BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025065
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 142/323 (43%), Gaps = 71/323 (21%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLREL----------- 53
+ + VCVTGASGF+ SWLV LL+RGYTV+ATVRDP N K +HL +L
Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWK 62
Query: 54 -------------DGATERLHL-----FKANLLEEGSFDSAVDGCDGVFHTASP------ 89
G T H+ F++ E ++G G+ + +
Sbjct: 63 ADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRR 122
Query: 90 VIFLSD----NPQE------------------------W-YSLAKTLAEEAAWKFAKENG 120
++F S N QE W Y ++KTLAE+AAWK+AKEN
Sbjct: 123 LVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENN 182
Query: 121 IDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ---SFAFPYIFVEIRDVVYAHIRAL 177
ID + I P V+GPF + L+ I G++ S FV + D+ AHI
Sbjct: 183 IDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLF 242
Query: 178 EVPKASGRYLLAGSVAQHSDILKFLREHYP--TLLRSGKLEEKYQPTIKVSQERAKSLGI 235
E PKA GRY+ + D+ K LRE YP + K ++ ++ S ++ LG
Sbjct: 243 ENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGF 302
Query: 236 NFT-PWEVGVRGCIESLMEKGFL 257
F E G +++ KG L
Sbjct: 303 EFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Query: 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKAN 66
+K CV G +GFVAS LVKLLLQ+GY V TVRDP N K HL EL + L +F+A+
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRAD 67
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQ 98
L +E SF++ + GCD VFH A+PV F S++P+
Sbjct: 68 LTDELSFEAPIAGCDFVFHVATPVHFASEDPE 99
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 94 SDNPQEW-YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP----------ILNF 142
S P W Y +KTLAE+AAWKFA+EN IDL+ + P + G L
Sbjct: 160 SAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLIT 219
Query: 143 GAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFL 202
G E ++N + G Q + + DV AHI E ASGRY+ + ++ KFL
Sbjct: 220 GNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFL 279
Query: 203 REHYP 207
+ YP
Sbjct: 280 SKRYP 284
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVR-DPNSPK-TEHLRELDGATERLHLFKANLL 68
VCVTG +GF+ SW++K LL+ GY+V T+R DP + L L GA+E+LH F A+L
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQE 99
SF +A++GC G+FHTASP+ F P+E
Sbjct: 64 NPDSFAAAIEGCVGIFHTASPIDFAVSEPEE 94
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 94 SDNPQEW-YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLIN 152
S P W Y+++KTLAE+A +F ++NGID+V + ++G F P L E L L+
Sbjct: 152 SVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVL 211
Query: 153 G--DQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP--T 208
G +Q + V + DV AHI LE GRY + + ++ + L YP
Sbjct: 212 GKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQ 271
Query: 209 LLRSGKLEE-KYQPTIKVSQERAKSLGINFT-PWEVGVRGCIESLMEKGFL 257
+L +L+E K ++ ++ G +F E I+ EKG+L
Sbjct: 272 ILTVDELKEIKGARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
Length = 342
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA- 65
E +V VTGA+GFVAS +V+ LL+ GY V+ T R ++ K +L++ A A
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR--SASKLANLQKRWDAKYPGRFETAV 67
Query: 66 --NLLEEGSFDSAVDGCDGVFHTASPVIF 92
++L++G++D + G GV H AS V F
Sbjct: 68 VEDMLKQGAYDEVIKGAAGVAHIASVVSF 96
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 96 NPQE--W-YSLAKTLAEEAAWKFAKENG--IDLVAIHPGTVIGPFFQPILNFGAEV--IL 148
+PQ+ W Y+ +KT AE AAWKF EN L A+ P IG F P G+ ++
Sbjct: 168 DPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMM 227
Query: 149 NLINGDQSFAF----PYIFVEIRDVVYAHIRALEVPKASGR--YLLAGSVAQHSDILKFL 202
+L NG+ S A P +V D+ H+ L +P+ R Y AG+ ++ +L
Sbjct: 228 SLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNT-VLATF 286
Query: 203 REHYPTLLRSGKLEEKYQPTIKV----SQERAKSLG 234
R+ YP+ ++ Q K S E KSLG
Sbjct: 287 RKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLG 322
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA- 65
E +V VTGA+GFVAS +V+ LL+ GY V+ T R ++ K +L++ A A
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR--SASKLANLQKRWDAKYPGRFETAV 67
Query: 66 --NLLEEGSFDSAVDGCDGVFHTASPVIF 92
+ L++G++D + G GV H AS V F
Sbjct: 68 VEDXLKQGAYDEVIKGAAGVAHIASVVSF 96
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 96 NPQE--W-YSLAKTLAEEAAWKFAKENG--IDLVAIHPGTVIGPFFQPILN--FGAEVIL 148
+PQ+ W Y+ +KT AE AAWKF EN L A+ P IG F P +
Sbjct: 168 DPQKSLWVYAASKTEAELAAWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXX 227
Query: 149 NLINGDQSFAF----PYIFVEIRDVVYAHIRALEVPKASGR--YLLAGSVAQHSDILKFL 202
+L NG+ S A P +V D+ H+ L +P+ R Y AG+ ++ +L
Sbjct: 228 SLFNGEVSPALALXPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNT-VLATF 286
Query: 203 REHYPTLLRSGKLEEKYQPTIKV----SQERAKSLG 234
R+ YP+ ++ Q K S E KSLG
Sbjct: 287 RKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLG 322
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + + GASGFV S L+ L RG+ V A VR P K E+ E L + KA++
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--------EHLKVKKADV- 55
Query: 69 EEGSFDSAVDGCDG 82
S D + C G
Sbjct: 56 --SSLDEVCEVCKG 67
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+ VTG +G ++L KLLL++GY V V +S LREL G + ++
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL-GIEGDIQYEDGDMA 73
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQEWYSLAKTLAEEAAWKFAKENGI 121
+ S AV + PQE Y+LA A+W G+
Sbjct: 74 DACSVQRAV---------------IKAQPQEVYNLAAQSFVGASWNQPVTTGV 111
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASPV 90
+ +G D VF+ A+ +
Sbjct: 86 -NCLKVTEGVDHVFNLAADM 104
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASPV 90
+ +G D VF+ A+ +
Sbjct: 86 -NCLKVTEGVDHVFNLAADM 104
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASPV 90
+ +G D VF+ A+ +
Sbjct: 86 -NCLKVTEGVDHVFNLAADM 104
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASPV 90
+ +G D VF+ A+ +
Sbjct: 86 -NCLKVTEGVDHVFNLAADM 104
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG----ATERLHL 62
E V VTGA+G V S V L +RGYTV+A+ + + ++LR L A E +
Sbjct: 149 ERGPVLVTGATGGVGSLAVSXLAKRGYTVEAST--GKAAEHDYLRVLGAKEVLAREDVXA 206
Query: 63 FKANLLEEGSFDSAVDGCDG 82
+ L++ + +AVD G
Sbjct: 207 ERIRPLDKQRWAAAVDPVGG 226
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHL 50
KV +TG +G S+L + LL++GY V R +S TE +
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV 43
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP---NSPKTEHL 50
V +TG +G S+L + LL++GY V VR N+ + EHL
Sbjct: 26 VALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHL 69
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V +TG G + S + +LLL+RG V + + + + EHL++ L + ++
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKD----HPNLTFVEGSIA 76
Query: 69 EEGSFDSAVDGC--DGVFHTASPVIFLSDNPQEWY--SLAKTLAEEAAWKFAKENGIDLV 124
+ + + D V HTA+ +P +WY +L + + AK+N +
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAASY----KDPDDWYNDTLTNCVGGSNVVQAAKKNNV--- 129
Query: 125 AIHPGTVIGPFFQPILNFGAEVILNLINGDQ 155
G + +FQ L +G + I + D
Sbjct: 130 ----GRFV--YFQTALCYGVKPIQQPVRLDH 154
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 23/152 (15%)
Query: 37 ATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-GSFDSAVDGCDGVFHTASPVIFLSD 95
A+ +DP+ + L G + + K N + F +A+ C GV PV D
Sbjct: 98 ASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTAL--CYGVKPIQQPVRL--D 153
Query: 96 NPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGP---------FFQPILNFGAEV 146
+P+ + + +++ A + + +G+D V V+GP FFQ L+ G +
Sbjct: 154 HPRNPANSSYAISKSANEDYLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQR-LSEGKKC 212
Query: 147 ILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 178
+ D FV ++D+ A +RA++
Sbjct: 213 FVTKARRD--------FVFVKDLARATVRAVD 236
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GF+ S LV L++ GY V V + +S + RE + LH+ L++
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV-VVVDNLSSGR----REFVNPSAELHVRD---LKD 54
Query: 71 GSFDSAVDGCDGVFH-TASPVIFLSDNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPG 129
S+ + + G D VFH A+P + LS + +A ++A++ G+ V
Sbjct: 55 YSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASS 113
Query: 130 TVI 132
+ +
Sbjct: 114 STV 116
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 95 DNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPI 139
+ P+ YS++K L + W + ++ G+ P +GP Q I
Sbjct: 155 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLI 214
Query: 140 LNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 178
LN + LI+G + F +IRD + A R +E
Sbjct: 215 LNLVEGSPIKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 95 DNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPI 139
+ P+ YS++K L + W + ++ G+ P +GP Q I
Sbjct: 155 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLI 214
Query: 140 LNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 178
LN + LI+G + F +IRD + A R +E
Sbjct: 215 LNLVEGSPIKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 95 DNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPI 139
+ P+ YS++K L + W + ++ G+ P +GP Q I
Sbjct: 155 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLI 214
Query: 140 LNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 178
LN + LI+G + F +IRD + A R +E
Sbjct: 215 LNLVEGSPIKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 95 DNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPI 139
+ P+ YS++K L + W + ++ G+ P +GP Q I
Sbjct: 155 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLI 214
Query: 140 LNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 178
LN + LI+G + F +IRD + A R +E
Sbjct: 215 LNLVEGSPIKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 95 DNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPI 139
+ P+ YS++K L + W + ++ G+ P +GP Q I
Sbjct: 155 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLI 214
Query: 140 LNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 178
LN + LI+G + F +IRD + A R +E
Sbjct: 215 LNLVEGSPIKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
MSG K +TG G ++L KLLL++GY V R + L+EL G +
Sbjct: 1 MSG----KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKEL-GIENDVK 55
Query: 62 LFKANLLEEGSFDSAVDGC--DGVFHTAS 88
+ +LLE + ++ D V++ A+
Sbjct: 56 IIHMDLLEFSNIIRTIEKVQPDEVYNLAA 84
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 95 DNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGP---------------FFQPI 139
+ P+ YS++K L + W + ++ G+ P +GP Q I
Sbjct: 457 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLI 516
Query: 140 LNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 178
LN + LI+G + F +IRD + A R +E
Sbjct: 517 LNLVEGSPIKLIDGGKQ---KRCFTDIRDGIEALYRIIE 552
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 95 DNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPI 139
+ P+ YS++K L + W + ++ G+ P +GP Q I
Sbjct: 142 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLI 201
Query: 140 LNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 178
LN + LI+G + F +IRD + A R +E
Sbjct: 202 LNLVEGSPIKLIDGGKQ---KRCFTDIRDGIEALYRIIE 237
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 24 LVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA 65
+VKLLL +G V A +D N+P EHL + +G E + L A
Sbjct: 57 IVKLLLAKGADVNARSKDGNTP--EHLAKKNGHHEIVKLLDA 96
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 20/138 (14%)
Query: 82 GVF-HTASP-VIFLSDNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGP--FFQ 137
GV+ +T +P V+ +++P+ Y +K +E + +N V + V GP F++
Sbjct: 140 GVYGNTKAPNVVGKNESPENVYGFSKLCMDEFVLSHSNDNV--QVGLRYFNVYGPREFYK 197
Query: 138 PILNFGAEVILNLINGDQSFA----FPY-----IFVEIRDVVYAHIRALEVPKASGRYLL 188
A ++L L G +F F + FV I DV+ A+++A++ K SG Y +
Sbjct: 198 EKT---ASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQK-SGVYNV 253
Query: 189 AGSVAQ-HSDILKFLREH 205
S A+ +++I+ L+EH
Sbjct: 254 GYSQARSYNEIVSILKEH 271
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 11 VCVTGASGFVASWLVKLLLQRGY---TVKATVRDPNSPKTEHLRELDGATERLHLFKANL 67
+ VTG +GF+ S LV L++ GY V RD H+R+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRD--------------- 47
Query: 68 LEEGSFDSAVDGCDGVFH-TASPVIFLSDNPQEWYSLAKTLAEEAAWKFAKENGIDLV 124
L++ S+ + + G D VFH A+P + LS + +A ++A++ G+ V
Sbjct: 48 LKDYSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTV 104
>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|B Chain B, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|C Chain C, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|D Chain D, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 260
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVR 40
++KVV +TGAS + + LV+ R Y V AT R
Sbjct: 27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSR 60
>pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase
pdb|2EHD|B Chain B, Crystal Structure Analysis Of Oxidoreductase
Length = 234
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
EG + V +TGAS + +LL +GY V RD + L+ L E
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARD-----EKRLQALAAELEGALPLP 56
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVI 91
++ EEG + AV + F S ++
Sbjct: 57 GDVREEGDWARAVAAMEEAFGELSALV 83
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP---NSPKTEHL----RELDGATERLH 61
K+ +TG +G S+L + LL +GY V +R N+ + H+ ++ A +LH
Sbjct: 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 88
Query: 62 LFKANLLEEGSFDSAVD 78
A+L + S +D
Sbjct: 89 Y--ADLTDASSLRRWID 103
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
E + K + +TG +GFV S L L+ G+ V TV D + E E L
Sbjct: 2 EKDRKRILITGGAGFVGSHLTDKLMMDGHEV--TVVDNFFTGRKRNVEHWIGHENFELIN 59
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQEWYSLAKTL 107
+++E + D ++H ASP + P Y+ KTL
Sbjct: 60 HDVVEPLYIE-----VDQIYHLASP----ASPPNYMYNPIKTL 93
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRD-PNSPKTEHLRELDGATERLHLFKANL 67
K V VTG +GF SWL L + G VK D P P + L+ E H+
Sbjct: 10 KRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMES-HIGDIRD 68
Query: 68 LEEGSFDSAVDGCDGVFHTAS-PVIFLS-DNPQEWYS 102
E+ A + VFH A+ P++ LS + P + YS
Sbjct: 69 FEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYS 105
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVK-----ATVRDPNSPK 46
V VTG +GF+ S +V+ LL RG V AT + N PK
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK 43
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANL 67
++ V +TGA+ + + + L +RG TV VRD + R + G E L +L
Sbjct: 16 QRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAA-RTMAGQVEVRELDLQDL 74
Query: 68 LEEGSFDSAVDGCDGVFHTA 87
F V G D + + A
Sbjct: 75 SSVRRFADGVSGADVLINNA 94
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGY 33
+ E K+V VTG +G++ S V L++ GY
Sbjct: 4 QLQSESTSKIVLVTGGAGYIGSHTVVELIENGY 36
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ V GA+G S +V +RG+ V A VRDP A +RL A L++E
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK-----------AADRLGATVATLVKE 51
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 25/136 (18%)
Query: 8 EKVVCVTGASGFVASWLVKLLLQRGYTV-------------KATVRDPNSPKT--EHLRE 52
+++ VTGASG + + + + L+Q+G V A + P T + +
Sbjct: 32 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCD 91
Query: 53 LDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQEWYS------LAKT 106
L + L +F A S S VD C A P LS + W LA +
Sbjct: 92 LSNEEDILSMFSAIR----SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALS 147
Query: 107 LAEEAAWKFAKENGID 122
+ A++ KE +D
Sbjct: 148 ICTREAYQSMKERNVD 163
>pdb|4DX6|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|2J8S|A Chain A, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|B Chain B, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|C Chain C, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
Length = 1055
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|2GIF|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|D Chain D, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|E Chain E, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|F Chain F, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|4DX5|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|1T9T|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9U|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9V|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9W|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9X|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9Y|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
Length = 1049
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|1OY6|A Chain A, Structural Basis Of The Multiple Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY8|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY9|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OYD|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|1OYE|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|2I6W|A Chain A, Crystal Structure Of The Multidrug Efflux Transporter Acrb
pdb|2RDD|A Chain A, X-Ray Crystal Structure Of Acrb In Complex With A Novel
Transmembrane Helix.
pdb|3D9B|A Chain A, Symmetric Structure Of E. Coli Acrb
pdb|2W1B|A Chain A, The Structure Of The Efflux Pump Acrb In Complex With Bile
Acid
Length = 1049
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|3AOA|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
Length = 1053
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|2HQC|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 198 ILKFLREHYPTLLRSGKLEEKYQPTIKVSQER 229
++ F+ ++P+LL+ G LEE P +K S+ +
Sbjct: 151 LINFIHHNWPSLLKHGFLEEFITPIVKASKNK 182
>pdb|3NOC|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 1049
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|2HQF|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|2HQG|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 185 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF 237
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVSI 743
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 79 GCDGVFHTASPVIFLSDNPQEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP 138
G +G+F+ + P + + Y L K +E A + A+ NG+ +V PG V+G
Sbjct: 139 GHEGLFYDSLP------SGKSSYVLCKWALDEQAREQAR-NGLPVVIGIPGMVLGE---- 187
Query: 139 ILNFG---AEVILNLINGDQS--FAFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVA 193
L+ G VI + NG+ + A ++ + + ALE + RYLL G
Sbjct: 188 -LDIGPTTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRIGERYLLTGHNL 246
Query: 194 QHSDILKFLRE 204
+ +D+ + + E
Sbjct: 247 EMADLTRRIAE 257
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 198 ILKFLREHYPTLLRSGKLEEKYQPTIKVSQER 229
++ F+ ++P+LLR LEE P +KVS+ +
Sbjct: 123 LINFIHHNWPSLLRHRFLEEFITPIVKVSKNK 154
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 55
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 55
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 55
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 1 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 51
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYT 34
+++ VTG +GF+ S +VK L +G T
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGIT 72
>pdb|2Z2F|A Chain A, X-Ray Crystal Structure Of Bovine Stomach Lysozyme
Length = 129
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 20 VASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKAN---LLEEGSFDSA 76
+A+WL + Y KAT +P+S T++ +F+ N +G +A
Sbjct: 25 LANWLCLTKWESSYNTKATNYNPSSESTDY-----------GIFQINSKWWCNDGKTPNA 73
Query: 77 VDGC 80
VDGC
Sbjct: 74 VDGC 77
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN
IV Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME
TERNARY Complex
Length = 206
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + + GA+G + +Q GY V VRD + +E R H+ ++L
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRP-------AHVVVGDVL 56
Query: 69 EEGSFDSAVDGCDGVF 84
+ D V G D V
Sbjct: 57 QAADVDKTVAGQDAVI 72
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
E + K + +TG +GFV S L L G+ V TV D + E E L
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEV--TVVDNFFTGRKRNVEHWIGHENFELIN 81
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQEWYSLAKTL 107
+++E + D ++H ASP + P Y+ KTL
Sbjct: 82 HDVVEPLYIE-----VDQIYHLASP----ASPPNYXYNPIKTL 115
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKA 37
V VTGASG V S V LL + GY V A
Sbjct: 150 VVVTGASGGVGSTAVALLHKLGYQVAA 176
>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Brequinar
Length = 372
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 43 NSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQEWYS 102
+SP T LR L G TE HL L E D + T P + + P
Sbjct: 190 SSPNTAGLRSLQGKTELRHLLSKVLQER----------DALKGTRKPAVLVKIAP----D 235
Query: 103 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGP 134
L E+ A A+E GID + + TV P
Sbjct: 236 LTAQDKEDIA-SVARELGIDGLIVTNTTVSRP 266
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKA-TVRDPNSPKT-EHLRELDGATERL-HLFKA 65
K V VTG +GF WL L G TVK ++ P P E R DG + +
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQ 69
Query: 66 NLLEEG--SFDSAVDGCDGVFHTAS-PVIFLS-DNPQEWYS 102
N L E F + VFH A+ P++ LS P E YS
Sbjct: 70 NKLLESIREFQPEI-----VFHMAAQPLVRLSYSEPVETYS 105
>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1Q1N|A Chain A, Apo And Holo Structures Of An Nadp(h)-dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|A Chain A, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|B Chain B, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
Length = 360
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 179 VPKASG--RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPT---IKVSQERAKSL 233
+ KA G Y+++ S + D +K +HY L G EKY T I V +
Sbjct: 198 ISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI 257
Query: 234 GINFTPWEVGVRGCIESL 251
N P + V G I S+
Sbjct: 258 DFNIMPKAMKVGGRIVSI 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,042,418
Number of Sequences: 62578
Number of extensions: 336027
Number of successful extensions: 1050
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 86
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)