Query 025066
Match_columns 258
No_of_seqs 250 out of 1245
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 9.3E-59 2E-63 401.9 29.1 258 1-258 108-365 (365)
2 KOG0697 Protein phosphatase 1B 100.0 4.5E-47 9.9E-52 304.4 21.8 229 1-229 58-297 (379)
3 KOG0698 Serine/threonine prote 100.0 2E-45 4.3E-50 317.1 24.7 223 1-231 80-312 (330)
4 PTZ00224 protein phosphatase 2 100.0 3.3E-45 7.2E-50 318.4 26.0 218 1-226 53-274 (381)
5 PF00481 PP2C: Protein phospha 100.0 1.2E-45 2.5E-50 309.2 13.9 212 1-215 38-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 3.3E-43 7.2E-48 294.1 17.9 206 1-226 43-255 (262)
7 cd00143 PP2Cc Serine/threonine 100.0 2.4E-37 5.3E-42 258.3 25.4 213 1-222 35-254 (254)
8 smart00332 PP2Cc Serine/threon 100.0 3.2E-37 7E-42 258.0 24.0 211 1-220 39-255 (255)
9 KOG0699 Serine/threonine prote 100.0 5.9E-38 1.3E-42 260.3 18.5 167 59-225 330-505 (542)
10 PRK14559 putative protein seri 100.0 8.1E-38 1.8E-42 286.2 20.6 213 1-228 419-640 (645)
11 KOG0700 Protein phosphatase 2C 100.0 3E-37 6.6E-42 261.3 18.1 210 1-210 104-378 (390)
12 KOG1323 Serine/threonine phosp 100.0 6.7E-30 1.5E-34 210.4 19.2 222 1-225 149-489 (493)
13 KOG1379 Serine/threonine prote 99.9 3.1E-25 6.8E-30 182.5 19.5 182 1-222 108-330 (330)
14 KOG0618 Serine/threonine phosp 99.9 7.6E-21 1.7E-25 175.4 13.6 207 2-224 557-773 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.8 4.3E-18 9.3E-23 136.7 16.5 155 1-207 35-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.8 6.3E-18 1.4E-22 137.7 12.1 156 1-190 29-196 (212)
17 TIGR02865 spore_II_E stage II 99.7 5.7E-16 1.2E-20 146.8 18.3 169 1-222 585-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.6 6.8E-14 1.5E-18 112.1 17.3 171 1-223 9-193 (193)
19 COG2208 RsbU Serine phosphatas 98.6 3E-06 6.5E-11 74.8 17.6 169 1-223 180-366 (367)
20 COG3700 AphA Acid phosphatase 62.5 19 0.00041 28.4 4.7 48 162-210 72-130 (237)
21 PF09436 DUF2016: Domain of un 60.8 5.5 0.00012 26.3 1.4 22 159-181 25-46 (72)
22 PRK10693 response regulator of 55.3 76 0.0017 27.1 8.0 50 37-91 208-259 (303)
23 PF06972 DUF1296: Protein of u 43.1 47 0.001 21.0 3.4 27 176-205 19-45 (60)
24 COG2168 DsrH Uncharacterized c 43.1 21 0.00046 24.9 2.1 30 156-186 20-49 (96)
25 PRK15322 invasion protein OrgB 40.4 1.3E+02 0.0029 24.2 6.4 52 156-208 142-194 (210)
26 PF01436 NHL: NHL repeat; Int 37.3 62 0.0014 16.6 3.6 21 66-86 8-28 (28)
27 COG1539 FolB Dihydroneopterin 35.6 1.8E+02 0.0038 21.3 7.2 62 167-230 43-106 (121)
28 cd01460 vWA_midasin VWA_Midasi 35.5 1.9E+02 0.0041 24.4 7.1 43 213-257 193-235 (266)
29 cd00534 DHNA_DHNTPE Dihydroneo 35.0 1.7E+02 0.0037 20.9 6.4 58 167-226 42-101 (118)
30 PF12095 DUF3571: Protein of u 34.0 1.4E+02 0.0031 20.3 4.9 50 160-209 8-67 (83)
31 PF04155 Ground-like: Ground-l 33.4 1.4E+02 0.0031 19.6 5.4 43 177-221 7-49 (76)
32 KOG3571 Dishevelled 3 and rela 33.4 1.5E+02 0.0033 27.4 6.4 59 158-237 296-355 (626)
33 PF03744 BioW: 6-carboxyhexano 31.0 1.5E+02 0.0032 24.7 5.5 65 193-257 24-90 (239)
34 COG3411 Ferredoxin [Energy pro 30.3 1.4E+02 0.003 19.2 4.1 33 164-196 19-52 (64)
35 KOG0641 WD40 repeat protein [G 27.8 3.5E+02 0.0076 22.4 7.3 39 61-99 232-273 (350)
36 PF05402 PqqD: Coenzyme PQQ sy 26.6 1.7E+02 0.0037 18.3 4.6 29 177-205 14-42 (68)
37 TIGR03859 PQQ_PqqD coenzyme PQ 26.5 1.6E+02 0.0035 19.6 4.4 40 163-205 17-56 (81)
38 PRK11593 folB bifunctional dih 26.2 2.5E+02 0.0054 20.1 6.6 59 167-228 42-102 (119)
39 COG3315 O-Methyltransferase in 25.9 1.9E+02 0.0041 24.8 5.6 35 80-114 104-139 (297)
40 TIGR03735 PRTRC_A PRTRC system 25.5 41 0.0009 26.8 1.4 25 159-184 24-48 (192)
41 PRK06246 fumarate hydratase; P 25.4 1.6E+02 0.0035 25.1 5.0 71 4-77 191-261 (280)
42 PF06574 FAD_syn: FAD syntheta 23.1 48 0.001 25.4 1.3 30 202-231 24-53 (157)
43 PRK02391 heat shock protein Ht 22.7 1.1E+02 0.0023 26.3 3.5 38 151-189 104-141 (296)
44 PRK03982 heat shock protein Ht 21.6 1.4E+02 0.003 25.4 4.0 38 151-189 96-133 (288)
45 COG3484 Predicted proteasome-t 21.4 69 0.0015 25.8 1.9 30 159-190 39-68 (255)
46 TIGR00722 ttdA_fumA_fumB hydro 21.3 1.7E+02 0.0038 24.8 4.4 33 45-77 222-254 (273)
47 TIGR00525 folB dihydroneopteri 21.3 3.1E+02 0.0068 19.5 6.6 56 167-222 41-99 (116)
48 PRK05457 heat shock protein Ht 21.1 1.5E+02 0.0033 25.2 4.1 39 150-189 104-142 (284)
49 PF04077 DsrH: DsrH like prote 20.3 27 0.00059 23.9 -0.5 26 158-184 16-41 (88)
50 PRK15324 type III secretion sy 20.3 1.9E+02 0.0042 24.2 4.4 26 200-225 168-193 (252)
51 TIGR02276 beta_rpt_yvtn 40-res 20.0 1.7E+02 0.0037 15.9 3.1 19 70-88 3-21 (42)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=9.3e-59 Score=401.93 Aligned_cols=258 Identities=90% Similarity=1.398 Sum_probs=239.4
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCCCceEEEEEEeCCeEEEEecCc
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVFGRRLVVANVGD 80 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i~~~~l~~anvGD 80 (258)
|||||||+.+|++|++.+++.+.+...+...+.++|.++|..+++++.+.........+|||++++++.++++|++|+||
T Consensus 108 V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGD 187 (365)
T PLN03145 108 VFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGD 187 (365)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCC
Confidence 79999999999999999999998766666678889999999999999876554444559999999999999999999999
Q ss_pred ceEEEEeCCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccCCCeEEEeecCC
Q 025066 81 CRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTE 160 (258)
Q Consensus 81 Sr~~~~~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~~~~~~l~~ 160 (258)
||+|+++++++++||+||++.++.|++||.+.||.+..++++|.+.+||+|||+.+|.+....+.+++++|++..+++.+
T Consensus 188 SRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~ 267 (365)
T PLN03145 188 CRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTE 267 (365)
T ss_pred ceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCccccccccccccccccccccCCCcceEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999988766555555678899999999999
Q ss_pred CCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCCCCCCCCCccccc
Q 025066 161 EDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPPNLIAPRSRVQRS 240 (258)
Q Consensus 161 ~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~~~~~~~~~~~~~~ 240 (258)
+|.|||||||||||+++++++.+++.+.+....+++++|+.|++.|+.+++.||+|||||+|+..+|+....+++.++++
T Consensus 268 ~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~~~~~~~~~~~~~~ 347 (365)
T PLN03145 268 EDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPPPNLVAPRPRVQRS 347 (365)
T ss_pred CCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCCccccccccccccc
Confidence 99999999999999999999999988877777789999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhHhhcCC
Q 025066 241 FSAEGLRELQSFLDSLGN 258 (258)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~ 258 (258)
.+++.++++++++++|||
T Consensus 348 ~~~~~~~~~~~~~~~~~~ 365 (365)
T PLN03145 348 ISAEGLRELQSFLDSLAN 365 (365)
T ss_pred cCHHHHHHHHHhhhccCC
Confidence 999999999999999986
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-47 Score=304.40 Aligned_cols=229 Identities=37% Similarity=0.676 Sum_probs=206.4
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCCh--------HHHHHHHHHHHHHHHHHHHHhcccccc-CCCCceEEEEEEeCC
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEFP--------QEIERVVASAFLQTDSAFAEACSLDAA-LASGTTALAALVFGR 71 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~--------~~~~~~l~~~~~~~~~~i~~~~~~~~~-~~~gtT~~~~~i~~~ 71 (258)
|||||.|+..+.+++.++.+.|.....+. ++.+.-++..|.+.++.++........ ..+|||++++++.+.
T Consensus 58 VfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~ 137 (379)
T KOG0697|consen 58 VFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPT 137 (379)
T ss_pred EEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCc
Confidence 79999999999999999999887654443 367888999999999998876544332 249999999999999
Q ss_pred eEEEEecCcceEEEEeCCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCC--CCCCccC
Q 025066 72 RLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGA--DGGPLSA 149 (258)
Q Consensus 72 ~l~~anvGDSr~~~~~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~--~~~~~~~ 149 (258)
++|++|+||||++++|+|+.+.-|+||+|..|.|++||+++||.+.-.|++|.++++|||||+.+|...+. ..+.+++
T Consensus 138 h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSP 217 (379)
T KOG0697|consen 138 HIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSP 217 (379)
T ss_pred eEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999876543 3466899
Q ss_pred CCeEEEeecCCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCCC
Q 025066 150 EPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPPN 229 (258)
Q Consensus 150 ~p~~~~~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~~~ 229 (258)
+|++........|.||||++||+||+++++|++++++..+.-..++.++|..+++.++.+|++||+|++++.|-..|+..
T Consensus 218 EPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv~ 297 (379)
T KOG0697|consen 218 EPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKVS 297 (379)
T ss_pred CCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCCC
Confidence 99999999999889999999999999999999999999998899999999999999999999999999999997655443
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-45 Score=317.14 Aligned_cols=223 Identities=45% Similarity=0.698 Sum_probs=198.1
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCChH---HHHHHHHHHHH-HHHHHHHHhccccccCCCCceEEEEEEeCC-eEEE
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEFPQ---EIERVVASAFL-QTDSAFAEACSLDAALASGTTALAALVFGR-RLVV 75 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~---~~~~~l~~~~~-~~~~~i~~~~~~~~~~~~gtT~~~~~i~~~-~l~~ 75 (258)
|||||||+.+|+|+.+++...+.+...+.. .....++++|. .++..+... .. ....+|||++++++.++ ++|+
T Consensus 80 VfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~F~~~~D~~~~~~-~~-~~~~~gstav~~vi~~~~~l~v 157 (330)
T KOG0698|consen 80 VFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRAFLTKTDSEFLEK-RE-DNRSGGSTAVVALIKKGRKLYV 157 (330)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhh-cc-CCCCCcceeeeeeEecCCEEEE
Confidence 799999999999999999999987665544 48899999999 699999876 11 12348888888888855 9999
Q ss_pred EecCcceEEEEeCC-eeEeCCCCCCCCChhHHHHHHhcCCeeec----ceecCeeccccccCCcCccCCCCCCCCCccCC
Q 025066 76 ANVGDCRAVLCRRG-KAIEMSRDHKPVCSKEKKRIEASGGYVYD----GYLNGQLNVARALGDWHVEGMKGADGGPLSAE 150 (258)
Q Consensus 76 anvGDSr~~~~~~~-~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~----~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~ 150 (258)
||+||||+++++.+ ..++||.||+|..+.|+.||+++||++.. .|++|.++++|+|||..+|. +++.++
T Consensus 158 aN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~------~~v~a~ 231 (330)
T KOG0698|consen 158 ANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKS------QGVIAE 231 (330)
T ss_pred EEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcC------CcEecC
Confidence 99999999999865 89999999999999999999999999984 39999999999999999884 258999
Q ss_pred CeEEEeecCCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCCCC
Q 025066 151 PELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPPNL 230 (258)
Q Consensus 151 p~~~~~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~~~~ 230 (258)
|++....+.+.|.||||+||||||+++++|++++|+..+.....+..++..|...|+.+++.||||||||.|.+.+..+.
T Consensus 232 Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~~~~ 311 (330)
T KOG0698|consen 232 PEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPKSPS 311 (330)
T ss_pred CceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCcccccc
Confidence 99999999999999999999999999999999999987656678999999999999999999999999999998765554
Q ss_pred C
Q 025066 231 I 231 (258)
Q Consensus 231 ~ 231 (258)
.
T Consensus 312 ~ 312 (330)
T KOG0698|consen 312 S 312 (330)
T ss_pred C
Confidence 4
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=3.3e-45 Score=318.37 Aligned_cols=218 Identities=29% Similarity=0.529 Sum_probs=188.6
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCCCceEEEEEEe-CCeEEEEecC
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVF-GRRLVVANVG 79 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i~-~~~l~~anvG 79 (258)
|||||||..+|+++++.+.+.+.+.... ...+.|+++|..+|+++.+... .+|||++++++. +.+++++|||
T Consensus 53 VfDGHgG~~~S~~~~~~l~~~l~~~~~~--~~~~~l~~a~~~~d~~i~~~~~-----~~GsTatv~lI~~~~~l~vaNVG 125 (381)
T PTZ00224 53 VFDGHVNDECSQYLARAWPQALEKEPEP--MTDERMEELCLEIDEEWMDSGR-----EGGSTGTFCVIMKDVHLQVGNVG 125 (381)
T ss_pred EEeCCCcHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHHHHHhccc-----CCCCeEEEEEEEECCEEEEEEcc
Confidence 7999999999999999999888643221 1234588999999999975432 269999988876 5799999999
Q ss_pred cceEEEEeCCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCC--CCCCCCccCCCeEEEee
Q 025066 80 DCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMK--GADGGPLSAEPELMSTK 157 (258)
Q Consensus 80 DSr~~~~~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~--~~~~~~~~~~p~~~~~~ 157 (258)
|||+|++|++++++||+||++.++.|+.||.+.||.+..+|++|.+.+||+||+..+|... ....+.+.++|++..++
T Consensus 126 DSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~ 205 (381)
T PTZ00224 126 DSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLT 205 (381)
T ss_pred cceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeecccCCcccccccccccccCcceeeeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999998776442 12334467899999999
Q ss_pred cCCCCeEEEEecCCCcc-cCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 025066 158 LTEEDEFLIIACDGVWD-VFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQP 226 (258)
Q Consensus 158 l~~~d~~LvL~SDGl~d-~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~ 226 (258)
+.++| ||||||||||| +++++|+.+++.+.+....+++.+|+.|++.|+.+|+.||||||||++...+
T Consensus 206 l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 206 CQSND-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred CCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 99998 88899999999 8999999999887666667899999999999999999999999999998764
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.2e-45 Score=309.25 Aligned_cols=212 Identities=44% Similarity=0.750 Sum_probs=177.4
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCCh--HHHHHHHHHHHHH-HHHHHHHhccccccCCCCceEEEEEEeCCeEEEEe
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEFP--QEIERVVASAFLQ-TDSAFAEACSLDAALASGTTALAALVFGRRLVVAN 77 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~--~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~~gtT~~~~~i~~~~l~~an 77 (258)
|||||||+.++++++..+.+.+.+..... ..+.+.|..+|.. +++.+...........+|||++++++.++++|+||
T Consensus 38 V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~van 117 (254)
T PF00481_consen 38 VFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVAN 117 (254)
T ss_dssp EEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEE
T ss_pred EecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeeecccccccccccccccccccccccccccccceeEEEe
Confidence 79999999999999999998887643322 2688899999999 88888763221133449999999999999999999
Q ss_pred cCcceEEEEeCCeeE-eCCCCCCCCChhHHHHHHhcCCeee-cceecCeeccccccCCcCccCCCCCCCCCccCCCeEEE
Q 025066 78 VGDCRAVLCRRGKAI-EMSRDHKPVCSKEKKRIEASGGYVY-DGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMS 155 (258)
Q Consensus 78 vGDSr~~~~~~~~~~-~lt~dh~~~~~~e~~Ri~~~gg~i~-~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~~~~ 155 (258)
|||||+|+++.+... +||+||+|.++.|+.||+++||.+. ..|+.|.+++||+|||..+|... +.+++++|++..
T Consensus 118 vGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~---~~~v~~~P~i~~ 194 (254)
T PF00481_consen 118 VGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPG---KPGVIAEPDISE 194 (254)
T ss_dssp ESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCT---SSSSB---EEEE
T ss_pred eeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccccccccccccccccc---cceeeeeccccc
Confidence 999999999999888 9999999999999999999999998 89999999999999999888622 336899999999
Q ss_pred eecCCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCe
Q 025066 156 TKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNL 215 (258)
Q Consensus 156 ~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNi 215 (258)
+++.++|.|||||||||||+++++|+.+++.+.......++.+|+.|+++|+.+|+.|||
T Consensus 195 ~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 195 VDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp EEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred ccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999987766667999999999999999999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-43 Score=294.11 Aligned_cols=206 Identities=31% Similarity=0.466 Sum_probs=177.9
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCC----hH--HHHHHHHHHHHHHHHHHHHhcccc-ccCCCCceEEEEEEeCCeE
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEF----PQ--EIERVVASAFLQTDSAFAEACSLD-AALASGTTALAALVFGRRL 73 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~----~~--~~~~~l~~~~~~~~~~i~~~~~~~-~~~~~gtT~~~~~i~~~~l 73 (258)
||||||||.+|++||+.+++.|.+.... .. ...+++.+++..+++.+....... ....||||++++++.++++
T Consensus 43 V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l 122 (262)
T COG0631 43 VADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKL 122 (262)
T ss_pred EEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeE
Confidence 7999999999999999999998864211 11 167999999999999999875422 2345999999999999999
Q ss_pred EEEecCcceEEEEeCCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccCCCeE
Q 025066 74 VVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPEL 153 (258)
Q Consensus 74 ~~anvGDSr~~~~~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~~ 153 (258)
++|||||||+|++|++++++||+||++.+..++.|+...++.....+.+ .+||++|+.. ...|++
T Consensus 123 ~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~~~~~~---~ltralG~~~------------~~~p~~ 187 (262)
T COG0631 123 YVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSHPRRN---ALTRALGDFD------------LLEPDI 187 (262)
T ss_pred EEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHhCccch---hhhhhcCCCc------------ccceeE
Confidence 9999999999999999999999999999999999876665555554444 7999999863 488999
Q ss_pred EEeecCCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 025066 154 MSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQP 226 (258)
Q Consensus 154 ~~~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~ 226 (258)
....+.++| |+|||||||||.++++++.+++.. ..+++++++.|++.|+.+++.||+|+++|.+...+
T Consensus 188 ~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~~----~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 188 TELELEPGD-FLLLCSDGLWDVVSDDEIVDILKN----SETPQEAADKLIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred EEEEcCCCC-EEEEECCCCccCcCHHHHHHHHhc----CCCHHHHHHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 999999997 777999999999999999999653 67899999999999999999999999999998765
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.4e-37 Score=258.29 Aligned_cols=213 Identities=47% Similarity=0.749 Sum_probs=185.6
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHHhccc-cccCCCCceEEEEEEeCCeEE
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEF-----PQEIERVVASAFLQTDSAFAEACSL-DAALASGTTALAALVFGRRLV 74 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~-----~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~gtT~~~~~i~~~~l~ 74 (258)
|||||||+..+++|++.+.+.+.+.... ...+...|+++|..+++.+...... .....+|||++++++.+++++
T Consensus 35 V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~ 114 (254)
T cd00143 35 VFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLY 114 (254)
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEE
Confidence 7999999999999999999998764322 3567788999999999999876543 222349999999999999999
Q ss_pred EEecCcceEEEEeCCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccCCCeEE
Q 025066 75 VANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELM 154 (258)
Q Consensus 75 ~anvGDSr~~~~~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~~~ 154 (258)
++|+||||+|++++++++++|.||++.++.++.||.+.+|.+.....++...++|++|+..++. +...+|++.
T Consensus 115 ~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~~~-------~~~~~~~~~ 187 (254)
T cd00143 115 VANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGDFDLKP-------GVSAEPDVT 187 (254)
T ss_pred EEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCceeeccccCCccccC-------CEEcCCeEE
Confidence 9999999999999999999999999999999999999999888788888999999999987663 367889999
Q ss_pred Eeec-CCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEEc
Q 025066 155 STKL-TEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCF 222 (258)
Q Consensus 155 ~~~l-~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~ 222 (258)
.+++ .++| +|+||||||||+++++++.+++...... .+++++|+.|++.|..+++.||+|+|++++
T Consensus 188 ~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 188 VVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAK-EDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred EEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 9999 8888 6669999999999999999997653211 279999999999999999999999999975
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=3.2e-37 Score=258.00 Aligned_cols=211 Identities=46% Similarity=0.780 Sum_probs=184.3
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCCh----HHHHHHHHHHHHHHHHHHHHhccccc-cCCCCceEEEEEEeCCeEEE
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEFP----QEIERVVASAFLQTDSAFAEACSLDA-ALASGTTALAALVFGRRLVV 75 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~----~~~~~~l~~~~~~~~~~i~~~~~~~~-~~~~gtT~~~~~i~~~~l~~ 75 (258)
|||||||..+++++++.+.+.+.+..... ..+.+.|++++..+++.+........ ...+|||++++++.++++++
T Consensus 39 v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~ 118 (255)
T smart00332 39 VFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYV 118 (255)
T ss_pred EEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEE
Confidence 79999999999999999999887643222 35888899999999999987654432 23489999999999999999
Q ss_pred EecCcceEEEEeCCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccCCCeEEE
Q 025066 76 ANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMS 155 (258)
Q Consensus 76 anvGDSr~~~~~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~~~~ 155 (258)
+|+||||+|+++++++.++|.||++.++.|+.||.+.++.+..++.++...++|++|+..++. .+..+|++..
T Consensus 119 ~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~lt~~~g~~~~~~-------~i~~~p~~~~ 191 (255)
T smart00332 119 ANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLALSRAIGDFFLKP-------YVSAEPDVTV 191 (255)
T ss_pred EeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEecccccCCHhhcC-------CeEeeeEEEE
Confidence 999999999999999999999999999999999999999998888889999999999987664 3678899999
Q ss_pred eec-CCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 025066 156 TKL-TEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVV 220 (258)
Q Consensus 156 ~~l-~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv 220 (258)
.++ .++| +||||||||||+++++++.+++.+.... .++.++|+.|++.|..+++.||+|+|++
T Consensus 192 ~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 192 VELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred EEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 996 8888 6779999999999999999998764322 3689999999999999999999999985
No 9
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-38 Score=260.30 Aligned_cols=167 Identities=43% Similarity=0.696 Sum_probs=154.7
Q ss_pred CCceEEEEEEeCCeEEEEecCcceEEEEeCCeeEeCCCCCCCCChhHHHHHHhcCCeee-cceecCeeccccccCCcCcc
Q 025066 59 SGTTALAALVFGRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVY-DGYLNGQLNVARALGDWHVE 137 (258)
Q Consensus 59 ~gtT~~~~~i~~~~l~~anvGDSr~~~~~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~-~~~~~g~l~~tralG~~~~~ 137 (258)
+|||+++|++.++++++||.||||+++.|+|+.+.++.||+|....|..||.++||+|. .+|++|.++++|+|||+.||
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDHaYK 409 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDHAYK 409 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999997 89999999999999999887
Q ss_pred CCCCC--CCCCccCCCeEEEeecCCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhC------
Q 025066 138 GMKGA--DGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKR------ 209 (258)
Q Consensus 138 ~~~~~--~~~~~~~~p~~~~~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~------ 209 (258)
..... ..+.+++-|+|....|.+.|.|+|+++||||++++.++++++|+..+..+..+..+|+.|++.++.-
T Consensus 410 ~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~GDG 489 (542)
T KOG0699|consen 410 KNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTDGDG 489 (542)
T ss_pred cccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCCCCC
Confidence 54322 2345788999999999999999999999999999999999999999998999999999999999863
Q ss_pred CCCCCeEEEEEEcCCC
Q 025066 210 KSGDNLAVVVVCFQSQ 225 (258)
Q Consensus 210 g~~DNiTvivv~~~~~ 225 (258)
-+.||+|||++.|++-
T Consensus 490 TGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 490 TGCDNMTVIITTFKRK 505 (542)
T ss_pred cCCCcceEEEEEeccc
Confidence 2689999999999854
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=8.1e-38 Score=286.22 Aligned_cols=213 Identities=21% Similarity=0.275 Sum_probs=159.4
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHhcccc---ccCCCCceEEEEEEeCCeE
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDE----EFPQEIERVVASAFLQTDSAFAEACSLD---AALASGTTALAALVFGRRL 73 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~----~~~~~~~~~l~~~~~~~~~~i~~~~~~~---~~~~~gtT~~~~~i~~~~l 73 (258)
|||||||+.+|++||+.+++.|.+.. .......+.++++|..+|+.|.+..... ....||||++++++.++++
T Consensus 419 VaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l 498 (645)
T PRK14559 419 LCDGMGGHAAGEVASALAVETLQQYFQQHWQDELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQV 498 (645)
T ss_pred EEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEE
Confidence 79999999999999888887765421 1111235679999999999998754322 2234999999999999999
Q ss_pred EEEecCcceEEEE-eCCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccCCCe
Q 025066 74 VVANVGDCRAVLC-RRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPE 152 (258)
Q Consensus 74 ~~anvGDSr~~~~-~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~ 152 (258)
|++||||||+|++ ++|++++||+||++.+.+.+..+.. ..... ..+...+||++|+...+ ..+|+
T Consensus 499 ~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~Gi~~---~~a~~-~p~~~~LTrALG~~~~~----------~l~Pd 564 (645)
T PRK14559 499 AVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQRGVEP---QIAYA-RPDAYQLTQALGPRDNS----------AIQPD 564 (645)
T ss_pred EEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHhCCCH---HHHhc-CcccceeeeccCCCCCC----------cccce
Confidence 9999999999998 4689999999999875543332111 01111 23456799999985422 35799
Q ss_pred EEEeecCCCCeEEEEecCCCccc-CChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCC
Q 025066 153 LMSTKLTEEDEFLIIACDGVWDV-FMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPP 228 (258)
Q Consensus 153 ~~~~~l~~~d~~LvL~SDGl~d~-l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~~ 228 (258)
+..+.+.++| ++|||||||||+ +.+..+.+.+...+....++.++++.|++.|+.+|+.||+|+|||+++..|..
T Consensus 565 i~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~~ 640 (645)
T PRK14559 565 IQFLEIEEDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLKVRPQL 640 (645)
T ss_pred EEEEEcCCCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCCCC
Confidence 9999999988 566999999995 33333333344445556789999999999999999999999999999866543
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-37 Score=261.29 Aligned_cols=210 Identities=32% Similarity=0.475 Sum_probs=174.4
Q ss_pred CccCCChhHHHHHHHHHhHHHHHh------------cC-C---------------------ChHHHHHHHHHHHHHHHHH
Q 025066 1 MFDGHGGKHAADFASCHLPRFITE------------DE-E---------------------FPQEIERVVASAFLQTDSA 46 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~------------~~-~---------------------~~~~~~~~l~~~~~~~~~~ 46 (258)
|||||||..+++++++.+..++.. .. . ....+.++|.+||.+++++
T Consensus 104 IyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~Af~~tee~ 183 (390)
T KOG0700|consen 104 IYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKAFEATEED 183 (390)
T ss_pred EecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHHHHHHHHH
Confidence 799999999999999999888761 11 1 1456889999999999999
Q ss_pred HHHhcccc----cc-CCCCceEEEEEEeCCeEEEEecCcceEEEEe---CC---eeEeCCCCCCCCChhHHHHHHhcCC-
Q 025066 47 FAEACSLD----AA-LASGTTALAALVFGRRLVVANVGDCRAVLCR---RG---KAIEMSRDHKPVCSKEKKRIEASGG- 114 (258)
Q Consensus 47 i~~~~~~~----~~-~~~gtT~~~~~i~~~~l~~anvGDSr~~~~~---~~---~~~~lt~dh~~~~~~e~~Ri~~~gg- 114 (258)
+....... +. ..+|+||++.++.+..+||||+||||+++.+ ++ ..+|||.||+..++.|+.||+..+-
T Consensus 184 fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPd 263 (390)
T KOG0700|consen 184 FLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRRIRSEHPD 263 (390)
T ss_pred HHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHHHHHhCCC
Confidence 97654321 11 2389999999999999999999999999975 23 4789999999999999999998874
Q ss_pred ---eeecc--eecCeeccccccCCcCccCCCC--------------CCCCCccCCCeEEEeecCCCCeEEEEecCCCccc
Q 025066 115 ---YVYDG--YLNGQLNVARALGDWHVEGMKG--------------ADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDV 175 (258)
Q Consensus 115 ---~i~~~--~~~g~l~~tralG~~~~~~~~~--------------~~~~~~~~~p~~~~~~l~~~d~~LvL~SDGl~d~ 175 (258)
.+... |+.|.+.++|||||..+|.-.- ...|+++++|.++.++|.+.|+||||+|||||++
T Consensus 264 d~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~ 343 (390)
T KOG0700|consen 264 DPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEY 343 (390)
T ss_pred CcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhh
Confidence 34444 9999999999999998874321 1256789999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 025066 176 FMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRK 210 (258)
Q Consensus 176 l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g 210 (258)
|+++|++.+|.+++.....-+.+|++|++.|+.+.
T Consensus 344 lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 344 LSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred cChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999999998876653445778999999998654
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=6.7e-30 Score=210.44 Aligned_cols=222 Identities=32% Similarity=0.495 Sum_probs=173.6
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhc--------------------------------------CC--ChHHHHHHHHHHH
Q 025066 1 MFDGHGGKHAADFASCHLPRFITED--------------------------------------EE--FPQEIERVVASAF 40 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~--------------------------------------~~--~~~~~~~~l~~~~ 40 (258)
+||||.|..++-+|++.+.+.+.+. .. ...-+..+|+.||
T Consensus 149 lfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGAlEsAF 228 (493)
T KOG1323|consen 149 LFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGALESAF 228 (493)
T ss_pred eecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHHHHHHHH
Confidence 5899999999999998776655420 00 1123677899999
Q ss_pred HHHHHHHHHhccccccCCCCceEEEEEEeCCeEEEEecCcceEEEEeCCeeEeCCCCCCCCChhHHHHHHhcC-------
Q 025066 41 LQTDSAFAEACSLDAALASGTTALAALVFGRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASG------- 113 (258)
Q Consensus 41 ~~~~~~i~~~~~~~~~~~~gtT~~~~~i~~~~l~~anvGDSr~~~~~~~~~~~lt~dh~~~~~~e~~Ri~~~g------- 113 (258)
+.++++|....+... ..+|||+++++..-+++|++|.||||++++|++++..|+.+.+|. .||+|++..+
T Consensus 229 qemDeqiarer~~~~-~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~Laf~~PeLl 305 (493)
T KOG1323|consen 229 QEMDEQIARERQVWR-LPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQELAFRNPELL 305 (493)
T ss_pred HHHHHHHHHHHHhhc-CCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHHHhhcChHhh
Confidence 999999977544333 338999999999999999999999999999999999999999876 6899998764
Q ss_pred -C-----------------------------eee------------------cceecCeeccccccCCcCccCCCCC--C
Q 025066 114 -G-----------------------------YVY------------------DGYLNGQLNVARALGDWHVEGMKGA--D 143 (258)
Q Consensus 114 -g-----------------------------~i~------------------~~~~~g~l~~tralG~~~~~~~~~~--~ 143 (258)
+ +.. ..|+-+.+.++|.+||+.++.+... +
T Consensus 306 gneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsnl~i 385 (493)
T KOG1323|consen 306 GNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSNLSI 385 (493)
T ss_pred cccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecCCccc
Confidence 1 000 1234456789999999999987654 4
Q ss_pred CCCccCCCeEEEeecCC----CCeEEEEecCCCcccCChhHHHHHHHHHHHccC--CH---HHHHHHHHHHHHh------
Q 025066 144 GGPLSAEPELMSTKLTE----EDEFLIIACDGVWDVFMSQNAVDFARRRLQEHN--DP---VMCSKDLVDEALK------ 208 (258)
Q Consensus 144 ~~~~~~~p~~~~~~l~~----~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~--~~---~~~a~~l~~~a~~------ 208 (258)
.+..++.|++++.++.+ .|.++||+|||+||+++++|+..+++..+.... +| ..+|+.|+..|..
T Consensus 386 KPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rg 465 (493)
T KOG1323|consen 386 KPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRG 465 (493)
T ss_pred chhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCc
Confidence 67889999999988753 344888999999999999999999998775432 33 3577888887742
Q ss_pred -------CCCCCCeEEEEEEcCCC
Q 025066 209 -------RKSGDNLAVVVVCFQSQ 225 (258)
Q Consensus 209 -------~g~~DNiTvivv~~~~~ 225 (258)
.|+.|||||.||.+...
T Consensus 466 Wr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 466 WRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred eeccCCCcCCCCceEEEEEeccCC
Confidence 25799999999998754
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=3.1e-25 Score=182.53 Aligned_cols=182 Identities=19% Similarity=0.301 Sum_probs=131.7
Q ss_pred CccCCChhHH-----HHHHHHHh---HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCCCceEEEEEEe--C
Q 025066 1 MFDGHGGKHA-----ADFASCHL---PRFITEDEEFPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVF--G 70 (258)
Q Consensus 1 V~DG~GG~~~-----~~~a~~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i~--~ 70 (258)
||||+|||.- +.|....+ .+.+.+....+.++...|.+++.++-++ +...-++||++++.+. +
T Consensus 108 VADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~-------~~~~vGSSTAcI~~l~~~~ 180 (330)
T KOG1379|consen 108 VADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ-------KVPIVGSSTACILALDREN 180 (330)
T ss_pred EccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc-------CCCCCCcceeeeeeeecCC
Confidence 7999999984 44433332 2333333344557888787776555322 1222378888888888 7
Q ss_pred CeEEEEecCcceEEEEeCCeeEeCCCCC--CCCChhHHHHHHhcCCeeecceecCeeccc-----cccCCcCccCCCCCC
Q 025066 71 RRLVVANVGDCRAVLCRRGKAIEMSRDH--KPVCSKEKKRIEASGGYVYDGYLNGQLNVA-----RALGDWHVEGMKGAD 143 (258)
Q Consensus 71 ~~l~~anvGDSr~~~~~~~~~~~lt~dh--~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~t-----ralG~~~~~~~~~~~ 143 (258)
++|+++|+|||...++|+|++++-|..+ -++.|. +|+.. ..++|
T Consensus 181 ~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~Py-------------------QLs~~p~~~~~~~~d---------- 231 (330)
T KOG1379|consen 181 GKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPY-------------------QLSSPPEGYSSYISD---------- 231 (330)
T ss_pred CeEEEeeccCcceEEEECCEEEEcCchheeccCCce-------------------eeccCCccccccccC----------
Confidence 8999999999999999999999988754 444332 11111 11222
Q ss_pred CCCccCCCeEEEeecCCCCeEEEEecCCCcccCChhHHHHHHHHHHH-ccCCHHHHHHHHHHHHHhC-------------
Q 025066 144 GGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQ-EHNDPVMCSKDLVDEALKR------------- 209 (258)
Q Consensus 144 ~~~~~~~p~~~~~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~-~~~~~~~~a~~l~~~a~~~------------- 209 (258)
.....+.+.+++++|| +|||+||||||++.+++|.+++..... ...+++..|+.+++.|...
T Consensus 232 ---~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~ 307 (330)
T KOG1379|consen 232 ---VPDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQA 307 (330)
T ss_pred ---CccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHH
Confidence 2445677899999999 677999999999999999999987665 6678999999999998532
Q ss_pred ----------CCCCCeEEEEEEc
Q 025066 210 ----------KSGDNLAVVVVCF 222 (258)
Q Consensus 210 ----------g~~DNiTvivv~~ 222 (258)
|+.||||+++..+
T Consensus 308 Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 308 AREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred HHHhCcccCCCCcccEEEEEecC
Confidence 5699999999754
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=7.6e-21 Score=175.39 Aligned_cols=207 Identities=29% Similarity=0.481 Sum_probs=175.6
Q ss_pred ccCCChhHHHHHHHHHhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCCCceEEEEEEeCC--------eE
Q 025066 2 FDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVFGR--------RL 73 (258)
Q Consensus 2 ~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i~~~--------~l 73 (258)
+||-+......+....+.+++.++.....+-.+.|+.+|...++++...... .|..++.+.+..+ ++
T Consensus 557 ~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~~rklg~~g~~-----lg~~~~~~~i~~d~~~~asS~~l 631 (1081)
T KOG0618|consen 557 FDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRLNRKLGEEGQV-----LGGSVVLCQIVEDSLSPASSKTL 631 (1081)
T ss_pred EcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhhhhhhcc-----ccchhhheeecccccCcccchhh
Confidence 5777777888888888888888655444333445999999999999655433 4555555555533 78
Q ss_pred EEEecCcceEEEEeCCeeEeCCCCC-CCCChhHHHHHHhcCCeee-cceecCeeccccccCCcCccCCCCCCCCCccCCC
Q 025066 74 VVANVGDCRAVLCRRGKAIEMSRDH-KPVCSKEKKRIEASGGYVY-DGYLNGQLNVARALGDWHVEGMKGADGGPLSAEP 151 (258)
Q Consensus 74 ~~anvGDSr~~~~~~~~~~~lt~dh-~~~~~~e~~Ri~~~gg~i~-~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p 151 (258)
++||+|+|.++++++|+..++|+-. ...+++|.+||..++|++. +++++|....||++|.....+ .+.+.|
T Consensus 632 ~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P-------~v~p~P 704 (1081)
T KOG0618|consen 632 FAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFP-------HVLPDP 704 (1081)
T ss_pred hHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeecccccccc-------cccCCC
Confidence 9999999999999999999988765 4458999999999999998 899999999999999976654 488999
Q ss_pred eEEEeecCCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCC
Q 025066 152 ELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQS 224 (258)
Q Consensus 152 ~~~~~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~ 224 (258)
++....|.+.|+|||+++-++|++++-+++++.++ +..+|-.+|++|++.|...|+.||++|+||++..
T Consensus 705 hv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vR----n~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 705 HVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVR----NVEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNH 773 (1081)
T ss_pred ceeeEecccCceEEEEcchHHhhhccHHHHHHHHh----cCCchHHHHHHHHHHHHhcccccCeeEEEEEeec
Confidence 99999999999999999999999999999999876 4688999999999999999999999999999874
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.80 E-value=4.3e-18 Score=136.67 Aligned_cols=155 Identities=21% Similarity=0.165 Sum_probs=114.7
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCCCceEEEEEE--eCCeEEEEec
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALV--FGRRLVVANV 78 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i--~~~~l~~anv 78 (258)
|+||||+...|.+++..+...+.+...... .+.+.+..+|+.+.... ...+++|++++++ ..++++++|+
T Consensus 35 v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n~~l~~~~----~~~~~~T~~~~~id~~~~~l~~~~~ 106 (193)
T smart00331 35 IADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLNRAIYENG----EDGMFATLFLALYDFAGGTLSYANA 106 (193)
T ss_pred EEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHhcC----CCCcEEEEEEEEEECCCCEEEEEeC
Confidence 689999988888889888888875433221 24556667777776541 2238999999998 4779999999
Q ss_pred CcceEEEEe-CCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccCCCeEEEee
Q 025066 79 GDCRAVLCR-RGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTK 157 (258)
Q Consensus 79 GDSr~~~~~-~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~~~~~~ 157 (258)
||+|+|+++ ++...+.+.+. ++.+|.. ....++...++
T Consensus 107 Gd~~~~~~~~~~~~~~~~~~~-----------------------------~~~lG~~------------~~~~~~~~~~~ 145 (193)
T smart00331 107 GHSPPYLLRADGGLVEDLDDL-----------------------------GAPLGLE------------PDVEVDVRELT 145 (193)
T ss_pred CCCceEEEECCCCeEEEcCCC-----------------------------CceeeeC------------CCCcceeEEEe
Confidence 999999999 55555555442 2334432 23447778889
Q ss_pred cCCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 025066 158 LTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEAL 207 (258)
Q Consensus 158 l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~ 207 (258)
+.++|. |+|+||||||.+.++++.+++.+.. ..+++++++++.+.+.
T Consensus 146 l~~gd~-l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 146 LEPGDL-LLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred eCCCCE-EEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 999994 5599999999999999998887643 3568888888887754
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.76 E-value=6.3e-18 Score=137.68 Aligned_cols=156 Identities=23% Similarity=0.244 Sum_probs=84.8
Q ss_pred CccCCChhHHHHHHHHHhHHHH----HhcCCChHH--HHHHHHHHHHHHHHHH----HHhccccccCCCCceEEEEEEeC
Q 025066 1 MFDGHGGKHAADFASCHLPRFI----TEDEEFPQE--IERVVASAFLQTDSAF----AEACSLDAALASGTTALAALVFG 70 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l----~~~~~~~~~--~~~~l~~~~~~~~~~i----~~~~~~~~~~~~gtT~~~~~i~~ 70 (258)
||||+||...++.+++.+++.+ .+....... ....++.+...+...+ ...........++||++++++.+
T Consensus 29 VaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~ 108 (212)
T PF13672_consen 29 VADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRAFQSAKQADLELRDYGTTLLALVIDP 108 (212)
T ss_dssp EEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHSGGGTT-EE-EEEEEEET
T ss_pred EEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCceEEEEEEEC
Confidence 7999997777666665555554 444433332 2333344433333322 01111223334899999999999
Q ss_pred CeEEEEecCcceEEE-EeCCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccC
Q 025066 71 RRLVVANVGDCRAVL-CRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSA 149 (258)
Q Consensus 71 ~~l~~anvGDSr~~~-~~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~ 149 (258)
+.++++|+||||+|+ .+++++..++.+|+.. .. ..+..+... ....
T Consensus 109 ~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~----~~------------------~~~~~~~~~-----------~~~~ 155 (212)
T PF13672_consen 109 DKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGE----YP------------------NQTRSLTGD-----------DPEP 155 (212)
T ss_dssp TEEEEEEESS-EEEEEEETTEEEE-S---BHH----HH------------------HCTTSCCHH-----------CCCT
T ss_pred CEEEEEEECCCeEEEEECCCEEEEcCCCccch----hh------------------hhhhccCcc-----------cccc
Confidence 999999999999965 5789999999999711 10 112222221 1233
Q ss_pred CCeEEEeecCCCCeEEEEecCCCcccCChhH-HHHHHHHHHH
Q 025066 150 EPELMSTKLTEEDEFLIIACDGVWDVFMSQN-AVDFARRRLQ 190 (258)
Q Consensus 150 ~p~~~~~~l~~~d~~LvL~SDGl~d~l~~~e-i~~ii~~~~~ 190 (258)
..++..+++.++|.++ |||||||+.+...+ +..++.+.+.
T Consensus 156 ~~~~~~~~~~~~d~il-L~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 156 DVQYGSIPLEEGDVIL-LCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp ETEEEEEE--TT-EEE-EE-HHHHTTS-HHHHHHHH------
T ss_pred CCeEEEEEcCCCCEEE-EECcCccccCCCHHHHHHHhhhccc
Confidence 4477778889999555 99999999998655 6666655443
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.71 E-value=5.7e-16 Score=146.85 Aligned_cols=169 Identities=20% Similarity=0.225 Sum_probs=120.8
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCCCceEEEEEEe--CCeEEEEec
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVF--GRRLVVANV 78 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i~--~~~l~~anv 78 (258)
|+||+|+...|..++..+.+.+.+......+ ...++..+|..+.... ...+.+|+.+++++ .+++.++|+
T Consensus 585 laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~----~~~~faTl~l~~IDl~~g~~~~~~a 656 (764)
T TIGR02865 585 ISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRS----TDEKFSTLDLSVIDLYTGQAEFVKV 656 (764)
T ss_pred EEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCC----CCCeEEEEEEEEEECCCCeEEEEec
Confidence 6899997777777777777766542211111 2456677777765431 11278999999997 679999999
Q ss_pred CcceEEEEeCCeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccCCCeEEEeec
Q 025066 79 GDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKL 158 (258)
Q Consensus 79 GDSr~~~~~~~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~~~~~~l 158 (258)
|+++.|+.|++++.+++..+.|. |.+ ...+++....++
T Consensus 657 G~~p~~i~r~~~v~~i~s~~lPl---------------------Gil---------------------~~~~~~~~~~~L 694 (764)
T TIGR02865 657 GAVPSFIKRGAKVEVIRSSNLPI---------------------GIL---------------------DEVDVELVRKKL 694 (764)
T ss_pred CCCceEEEECCEEEEecCCCcee---------------------Eec---------------------cCCccceEEEEe
Confidence 99999999999988887654432 111 134567778899
Q ss_pred CCCCeEEEEecCCCcccCChhH-----HHHHHHHHHHccCCHHHHHHHHHHHHHhCC---CCCCeEEEEEEc
Q 025066 159 TEEDEFLIIACDGVWDVFMSQN-----AVDFARRRLQEHNDPVMCSKDLVDEALKRK---SGDNLAVVVVCF 222 (258)
Q Consensus 159 ~~~d~~LvL~SDGl~d~l~~~e-----i~~ii~~~~~~~~~~~~~a~~l~~~a~~~g---~~DNiTvivv~~ 222 (258)
.+|| +|||+|||+||..++.+ +.+++.+ ....+|+++++.|++++.... ..||+|++++++
T Consensus 695 ~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~--~~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 695 KNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKE--TNTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred CCCC-EEEEECCCCCcCCcccccHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 9999 56699999999886533 4444332 124579999999999997643 489999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.61 E-value=6.8e-14 Score=112.12 Aligned_cols=171 Identities=18% Similarity=0.189 Sum_probs=108.5
Q ss_pred CccCCChhHHHHHHHHHhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCCCceEEEEEEe--CCeEEEEec
Q 025066 1 MFDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVF--GRRLVVANV 78 (258)
Q Consensus 1 V~DG~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i~--~~~l~~anv 78 (258)
|+|++|....|.+.+..+...+........+ ..+.+..+|+.+....... ...+|++++.++ .+.++++|+
T Consensus 9 v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~---~~~~t~~~~~~d~~~~~l~~~~a 81 (193)
T PF07228_consen 9 VGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD---NRYATACYAIIDPETGTLTYANA 81 (193)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT---STTEEEEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc---cccceEEEEEecccceEEEEeCC
Confidence 5789995555555555555555432211111 3455666677774443322 268888888877 568999999
Q ss_pred CcceEEEEeC--CeeEeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccCCCeEEEe
Q 025066 79 GDCRAVLCRR--GKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMST 156 (258)
Q Consensus 79 GDSr~~~~~~--~~~~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~~~~~ 156 (258)
|+++++++++ +....+.....+ +|.. ....+....+
T Consensus 82 G~~~~l~~~~~~~~~~~~~~~~~~------------------------------lG~~------------~~~~~~~~~~ 119 (193)
T PF07228_consen 82 GHPPPLLLRPGGREIEQLESEGPP------------------------------LGIF------------EDIDYQEQEI 119 (193)
T ss_dssp SSSEEEEEETTCTEEEEETCSSBB------------------------------CSSS------------CTTCEEEEEE
T ss_pred CCCCEEEEeccccceeecccCccc------------------------------eeee------------ccccccceEE
Confidence 9999999998 444444432221 2321 2345666789
Q ss_pred ecCCCCeEEEEecCCCcccCChhHH-------HHHHHHHHHccCCHHHHHHHHHHHHHh---CCCCCCeEEEEEEcC
Q 025066 157 KLTEEDEFLIIACDGVWDVFMSQNA-------VDFARRRLQEHNDPVMCSKDLVDEALK---RKSGDNLAVVVVCFQ 223 (258)
Q Consensus 157 ~l~~~d~~LvL~SDGl~d~l~~~ei-------~~ii~~~~~~~~~~~~~a~~l~~~a~~---~g~~DNiTvivv~~~ 223 (258)
++.+||. |+|+||||+|....+.- .+++.+. ...++++.++.+.+.+.. ....||+|+++++++
T Consensus 120 ~l~~gd~-l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 120 QLEPGDR-LLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp E--TTEE-EEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred EeccccE-EEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 9999995 55999999999844332 3333221 346789999999998876 357999999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.64 E-value=3e-06 Score=74.79 Aligned_cols=169 Identities=15% Similarity=0.141 Sum_probs=105.6
Q ss_pred CccCCC-hhHHHHHHHHHhHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhccccccCCCCceEEEEEEe--CCeEEEE
Q 025066 1 MFDGHG-GKHAADFASCHLPRFITEDEEF-PQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVF--GRRLVVA 76 (258)
Q Consensus 1 V~DG~G-G~~~~~~a~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i~--~~~l~~a 76 (258)
|+|.+| |-.++-. +......+...... ..++. +.+..+|+.+....... +-+|+..++++ .+.+.++
T Consensus 180 I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~~~p~----~~l~~~n~~~~~~~~~~----~f~T~~~~~~d~~~~~l~y~ 250 (367)
T COG2208 180 IGDVSGKGVPAALL-MLMPKLALRLLLESGPLDPA----DVLETLNRVLKQNLEED----MFVTLFLGVYDLDSGELTYS 250 (367)
T ss_pred EEeccCCCHHHHHH-HHHHHHHHHHhhhcccCCHH----HHHHHHHHHHHhcccCC----cEEEEEEEEEeccCCEEEEe
Confidence 467777 5555444 33332222221111 12222 34444555555432221 77888888887 5699999
Q ss_pred ecCcceEEEEeCCee---EeCCCCCCCCChhHHHHHHhcCCeeecceecCeeccccccCCcCccCCCCCCCCCccCCCeE
Q 025066 77 NVGDCRAVLCRRGKA---IEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPEL 153 (258)
Q Consensus 77 nvGDSr~~~~~~~~~---~~lt~dh~~~~~~e~~Ri~~~gg~i~~~~~~g~l~~tralG~~~~~~~~~~~~~~~~~~p~~ 153 (258)
|+|---.++.+.++. ..++. ....+|.. ....+.+
T Consensus 251 ~aGH~p~~i~~~~~~~~~~~l~~------------------------------~g~piG~~------------~~~~~~~ 288 (367)
T COG2208 251 NAGHEPALILSADGEIEVEDLTA------------------------------LGLPIGLL------------PDYQYEV 288 (367)
T ss_pred eCCCCCeeEEEcCCCceeEEccC------------------------------CCceeeec------------CCccchh
Confidence 999999998886542 33332 22233322 3456667
Q ss_pred EEeecCCCCeEEEEecCCCcc-------cCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHh----CCCCCCeEEEEEEc
Q 025066 154 MSTKLTEEDEFLIIACDGVWD-------VFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALK----RKSGDNLAVVVVCF 222 (258)
Q Consensus 154 ~~~~l~~~d~~LvL~SDGl~d-------~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~----~g~~DNiTvivv~~ 222 (258)
....+.+|| .|||.|||+.+ .+..+...+++.+ ....+++++++.+.+.... ....||+|++++++
T Consensus 289 ~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~ 365 (367)
T COG2208 289 ASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGR--LLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKV 365 (367)
T ss_pred eeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEe
Confidence 788999999 67799999999 3555666666554 2346788888888777655 33578899999998
Q ss_pred C
Q 025066 223 Q 223 (258)
Q Consensus 223 ~ 223 (258)
.
T Consensus 366 ~ 366 (367)
T COG2208 366 K 366 (367)
T ss_pred c
Confidence 5
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=62.50 E-value=19 Score=28.45 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=32.8
Q ss_pred CeEEEEecCCCc-----------ccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 025066 162 DEFLIIACDGVW-----------DVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRK 210 (258)
Q Consensus 162 d~~LvL~SDGl~-----------d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g 210 (258)
|.+| ..|.|+| |+|.++..-+.+..-..+..-|.+.|..|++.-.++|
T Consensus 72 DTvL-FsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 72 DTVL-FSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CeeE-ecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 5455 7777776 5566666666555444445568899999999877665
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=60.76 E-value=5.5 Score=26.29 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=16.4
Q ss_pred CCCCeEEEEecCCCcccCChhHH
Q 025066 159 TEEDEFLIIACDGVWDVFMSQNA 181 (258)
Q Consensus 159 ~~~d~~LvL~SDGl~d~l~~~ei 181 (258)
..|.++| +++||+|=.+...-+
T Consensus 25 ~~G~Rll-va~nGv~lEv~r~WL 46 (72)
T PF09436_consen 25 RPGHRLL-VASNGVFLEVRRPWL 46 (72)
T ss_pred cCCcEEE-EecCcEEEEEechHH
Confidence 3678777 999999987755443
No 22
>PRK10693 response regulator of RpoS; Provisional
Probab=55.26 E-value=76 Score=27.07 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhccccccCCCCceEEEEEEe--CCeEEEEecCcceEEEEeCCee
Q 025066 37 ASAFLQTDSAFAEACSLDAALASGTTALAALVF--GRRLVVANVGDCRAVLCRRGKA 91 (258)
Q Consensus 37 ~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i~--~~~l~~anvGDSr~~~~~~~~~ 91 (258)
...+..+|+.+...... ...|++.++++ .+++.++|.|-...++..+++.
T Consensus 208 ~~~l~~lN~~l~~~~~~-----~~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 208 GALLKQVNHLLRQANLP-----GQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred HHHHHHHHHHHHhcCCC-----ceeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 44556677777654211 22578888887 4589999999999885434433
No 23
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=43.10 E-value=47 Score=20.98 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=21.4
Q ss_pred CChhHHHHHHHHHHHccCCHHHHHHHHHHH
Q 025066 176 FMSQNAVDFARRRLQEHNDPVMCSKDLVDE 205 (258)
Q Consensus 176 l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~ 205 (258)
-+++||...+.+ ...+|.+++++|+.+
T Consensus 19 hse~eIya~L~e---cnMDpnea~qrLL~q 45 (60)
T PF06972_consen 19 HSEEEIYAMLKE---CNMDPNEAVQRLLSQ 45 (60)
T ss_pred CCHHHHHHHHHH---hCCCHHHHHHHHHhc
Confidence 578888888764 367999999999873
No 24
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=43.07 E-value=21 Score=24.91 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=23.3
Q ss_pred eecCCCCeEEEEecCCCcccCChhHHHHHHH
Q 025066 156 TKLTEEDEFLIIACDGVWDVFMSQNAVDFAR 186 (258)
Q Consensus 156 ~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~ 186 (258)
.-+.++|.++ |+.|||+=.+...+...-++
T Consensus 20 ~~l~~~D~vl-L~qdGV~aAl~~~~~~~sl~ 49 (96)
T COG2168 20 RLLTEGDAVL-LLQDGVYAALKGNRYLASLR 49 (96)
T ss_pred HHhcccCeEE-EEcccchhhhcCcHHHHHHh
Confidence 3467899666 99999999998877766543
No 25
>PRK15322 invasion protein OrgB; Provisional
Probab=40.42 E-value=1.3e+02 Score=24.18 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=37.1
Q ss_pred eecCCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCC-HHHHHHHHHHHHHh
Q 025066 156 TKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHND-PVMCSKDLVDEALK 208 (258)
Q Consensus 156 ~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~-~~~~a~~l~~~a~~ 208 (258)
+...++.+|| +|||---=.++++++++.....+....+ ....|+.|-+.++.
T Consensus 142 i~yhd~~rFV-~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l~ 194 (210)
T PRK15322 142 LKYHQEQRFI-MSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAIN 194 (210)
T ss_pred EEEcCCCceE-EEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHHH
Confidence 4455667788 8888888888999998877666554444 66777777766653
No 26
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=37.26 E-value=62 Score=16.62 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=16.5
Q ss_pred EEEeCCeEEEEecCcceEEEE
Q 025066 66 ALVFGRRLVVANVGDCRAVLC 86 (258)
Q Consensus 66 ~~i~~~~l~~anvGDSr~~~~ 86 (258)
++-.++.+|++-.|..|+.++
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 344788999999999988754
No 27
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=35.59 E-value=1.8e+02 Score=21.32 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=46.6
Q ss_pred EecCCCcccCChhHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCCCC
Q 025066 167 IACDGVWDVFMSQNAVDFARRRLQEH--NDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPPNL 230 (258)
Q Consensus 167 L~SDGl~d~l~~~ei~~ii~~~~~~~--~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~~~~ 230 (258)
..||=+-|.+.-.++.+.+.+.++.. .-.+..|+.+.+..+.+- ..++.+-+.+.++.++.+
T Consensus 43 ~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~~~--~~v~~~~v~v~KP~ap~~ 106 (121)
T COG1539 43 AESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLARF--PRVELVEVKVTKPKAPIP 106 (121)
T ss_pred cCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhC--CccEEEEEEEECCCCCCC
Confidence 46788999999999999998877654 235677788887777654 778888888877655554
No 28
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=35.55 E-value=1.9e+02 Score=24.41 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCCCCCCCCCCCccccccchhhHHHHHHhHhhcC
Q 025066 213 DNLAVVVVCFQSQPPPNLIAPRSRVQRSFSAEGLRELQSFLDSLG 257 (258)
Q Consensus 213 DNiTvivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
.++.++.|-++.....+.-.....+ ....... -.+.+|+++++
T Consensus 193 ~~i~l~~I~ld~~~~~~SI~d~~~~-~~~~~~~-~~l~~Yl~~fp 235 (266)
T cd01460 193 QNVFVVFIIIDNPDNKQSILDIKVV-SFKNDKS-GVITPYLDEFP 235 (266)
T ss_pred cCCeEEEEEEcCCCCCCCccccccc-ccCCCCc-cHHHHHHhcCC
Confidence 4689999999876322222211111 1111111 18888888875
No 29
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=35.04 E-value=1.7e+02 Score=20.95 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=40.4
Q ss_pred EecCCCcccCChhHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 025066 167 IACDGVWDVFMSQNAVDFARRRLQEH--NDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQP 226 (258)
Q Consensus 167 L~SDGl~d~l~~~ei~~ii~~~~~~~--~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~ 226 (258)
-.||-+-+.++-..+.+.+.+.+... ...+..|..+.+..+.. .+.+.-+-+++.++.
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~--~~~v~~v~v~v~K~~ 101 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLED--YPKVSAIKVKVEKPN 101 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHh--CCCceEEEEEEECCC
Confidence 46788888899999999888766543 35677888888888766 234445555555443
No 30
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=33.96 E-value=1.4e+02 Score=20.28 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCCcccCChhHHHHHHHHHHHccC----------CHHHHHHHHHHHHHhC
Q 025066 160 EEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHN----------DPVMCSKDLVDEALKR 209 (258)
Q Consensus 160 ~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~----------~~~~~a~~l~~~a~~~ 209 (258)
..|.|+||-++-==.+++.+|+..-+...+++.. +.++.|+.|++.+..-
T Consensus 8 ~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~CeL 67 (83)
T PF12095_consen 8 QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTACEL 67 (83)
T ss_dssp ----EEEEESSS-SEEE-HHHHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH---E
T ss_pred ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhceee
Confidence 4566887776666668899999988887776532 3467888898888654
No 31
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=33.44 E-value=1.4e+02 Score=19.58 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEE
Q 025066 177 MSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVC 221 (258)
Q Consensus 177 ~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~ 221 (258)
.++++.++|.+.+.. .++...++.|...|-..-+. +..||+-.
T Consensus 7 n~~~L~~ii~~~~~~-~~~~~s~~~Iq~~~e~~f~~-~f~vIcs~ 49 (76)
T PF04155_consen 7 NSEELRKIILKNMKE-CNLSISKRAIQKAAEKRFGG-SFEVICSE 49 (76)
T ss_pred CCHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCC-CEEEEEeC
Confidence 356788888877654 67888877777776554433 77777643
No 32
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=33.43 E-value=1.5e+02 Score=27.42 Aligned_cols=59 Identities=17% Similarity=0.343 Sum_probs=30.0
Q ss_pred cCCCCeEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCeEEEEEE-cCCCCCCCCCCCCCc
Q 025066 158 LTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVC-FQSQPPPNLIAPRSR 236 (258)
Q Consensus 158 l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~-~~~~~~~~~~~~~~~ 236 (258)
+++|| .|+-..|==|+++++++.+..+++ |..+... |+..|.+ +++.+..-...|+..
T Consensus 296 Ie~GD-MiLQVNevsFENmSNd~AVrvLRE------------------aV~~~gP--i~ltvAk~~DP~~q~~fTipr~e 354 (626)
T KOG3571|consen 296 IEPGD-MILQVNEVSFENMSNDQAVRVLRE------------------AVSRPGP--IKLTVAKCWDPNPQSYFTIPRGE 354 (626)
T ss_pred cCccc-eEEEeeecchhhcCchHHHHHHHH------------------HhccCCC--eEEEEeeccCCCCcccccCCCCC
Confidence 44566 333444444555665555544433 3333333 6766665 455555555555554
Q ss_pred c
Q 025066 237 V 237 (258)
Q Consensus 237 ~ 237 (258)
+
T Consensus 355 p 355 (626)
T KOG3571|consen 355 P 355 (626)
T ss_pred c
Confidence 3
No 33
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=31.01 E-value=1.5e+02 Score=24.65 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHh--CCCCCCeEEEEEEcCCCCCCCCCCCCCccccccchhhHHHHHHhHhhcC
Q 025066 193 NDPVMCSKDLVDEALK--RKSGDNLAVVVVCFQSQPPPNLIAPRSRVQRSFSAEGLRELQSFLDSLG 257 (258)
Q Consensus 193 ~~~~~~a~~l~~~a~~--~g~~DNiTvivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
.+....+..|.++|+. +|..|-+.+-|=.+......-...+..........++.....++|...|
T Consensus 24 ~~i~~~~~~L~~Ral~H~~G~pDfinikie~i~~~i~~i~~Lpv~t~~~~s~ee~~~~a~~lL~~~g 90 (239)
T PF03744_consen 24 EDIEETVSELLERALNHSKGKPDFINIKIEKIKEPIQYIPALPVRTIEVSSVEEAREFARELLEKAG 90 (239)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEEEEecCCCceEecCCCceeeecCCHHHHHHHHHHHHHHcC
Confidence 4566777889999976 5788988877766762222222222222233333566666666665443
No 34
>COG3411 Ferredoxin [Energy production and conversion]
Probab=30.33 E-value=1.4e+02 Score=19.23 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=25.8
Q ss_pred EEEEecCCCc-ccCChhHHHHHHHHHHHccCCHH
Q 025066 164 FLIIACDGVW-DVFMSQNAVDFARRRLQEHNDPV 196 (258)
Q Consensus 164 ~LvL~SDGl~-d~l~~~ei~~ii~~~~~~~~~~~ 196 (258)
.|+.--||+| ..++++++..|+.+++..+..++
T Consensus 19 vl~vYpegvWY~~V~p~~a~rIv~~hl~~Gr~Ve 52 (64)
T COG3411 19 VLVVYPEGVWYTRVDPEDARRIVQSHLLGGRPVE 52 (64)
T ss_pred EEEEecCCeeEeccCHHHHHHHHHHHHhCCCcch
Confidence 6668889998 56899999999888877665544
No 35
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=27.77 E-value=3.5e+02 Score=22.37 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=25.1
Q ss_pred ceEEEEEEe-CCeEEEEecCcceEEEE--eCCeeEeCCCCCC
Q 025066 61 TTALAALVF-GRRLVVANVGDCRAVLC--RRGKAIEMSRDHK 99 (258)
Q Consensus 61 tT~~~~~i~-~~~l~~anvGDSr~~~~--~~~~~~~lt~dh~ 99 (258)
+.++.+.++ .+++...---||-+.++ |+++.+|--..|+
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS 273 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc
Confidence 334444444 35777766678877665 7888887766666
No 36
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=26.59 E-value=1.7e+02 Score=18.32 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHccCCHHHHHHHHHHH
Q 025066 177 MSQNAVDFARRRLQEHNDPVMCSKDLVDE 205 (258)
Q Consensus 177 ~~~ei~~ii~~~~~~~~~~~~~a~~l~~~ 205 (258)
.-++....|++.+....+..++++.|.+.
T Consensus 14 ~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 14 TLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp ---THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred cccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 44445555555555455566666555544
No 37
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=26.53 E-value=1.6e+02 Score=19.59 Aligned_cols=40 Identities=5% Similarity=0.083 Sum_probs=26.0
Q ss_pred eEEEEecCCCcccCChhHHHHHHHHHHHccCCHHHHHHHHHHH
Q 025066 163 EFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDE 205 (258)
Q Consensus 163 ~~LvL~SDGl~d~l~~~ei~~ii~~~~~~~~~~~~~a~~l~~~ 205 (258)
.++|+...| ++.-+++...|.+.+....++.++++.|.++
T Consensus 17 ~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~ 56 (81)
T TIGR03859 17 CYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQR 56 (81)
T ss_pred cEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 366566654 4566667777777676667777777666554
No 38
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=26.15 E-value=2.5e+02 Score=20.14 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=41.7
Q ss_pred EecCCCcccCChhHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCC
Q 025066 167 IACDGVWDVFMSQNAVDFARRRLQEH--NDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPP 228 (258)
Q Consensus 167 L~SDGl~d~l~~~ei~~ii~~~~~~~--~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~~ 228 (258)
-.||-+-+.++-..+.+.+.+.++.. .-.+.+|+.+.+..+..... .-+-+++.++.++
T Consensus 42 ~~~Ddl~~tidY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~---~~v~v~v~Kp~a~ 102 (119)
T PRK11593 42 AKSDDVADCLSYADIAETVISHVEGARFALVERVAEEVAELLLARFNS---PWVRIKLSKPGAV 102 (119)
T ss_pred ccccCHhhccCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCC---cEEEEEEECCCCC
Confidence 45888999999999999988876543 36778888888887766433 3444565554443
No 39
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.93 E-value=1.9e+02 Score=24.79 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=25.8
Q ss_pred cceEEEEeCCe-eEeCCCCCCCCChhHHHHHHhcCC
Q 025066 80 DCRAVLCRRGK-AIEMSRDHKPVCSKEKKRIEASGG 114 (258)
Q Consensus 80 DSr~~~~~~~~-~~~lt~dh~~~~~~e~~Ri~~~gg 114 (258)
|||+|.+.++. ....-.||+.....-++.+.+.||
T Consensus 104 DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~ 139 (297)
T COG3315 104 DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGA 139 (297)
T ss_pred ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCC
Confidence 99999999885 788888998765554554555544
No 40
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=25.45 E-value=41 Score=26.83 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=19.3
Q ss_pred CCCCeEEEEecCCCcccCChhHHHHH
Q 025066 159 TEEDEFLIIACDGVWDVFMSQNAVDF 184 (258)
Q Consensus 159 ~~~d~~LvL~SDGl~d~l~~~ei~~i 184 (258)
+.|.+|| +++||+|=.+....+.-+
T Consensus 24 ~~g~r~~-~a~~G~~lev~r~wl~~~ 48 (192)
T TIGR03735 24 KPGHRFI-VAADGVWREVRRPWLHAI 48 (192)
T ss_pred cCCcEEE-EecCcEEEEEecHHHHHH
Confidence 5688777 999999998877665543
No 41
>PRK06246 fumarate hydratase; Provisional
Probab=25.38 E-value=1.6e+02 Score=25.08 Aligned_cols=71 Identities=17% Similarity=0.018 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCCCceEEEEEEeCCeEEEEe
Q 025066 4 GHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVFGRRLVVAN 77 (258)
Q Consensus 4 G~GG~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~gtT~~~~~i~~~~l~~an 77 (258)
|.||. .+.|+...-+.+........ +...+.+.-+++-+.+.+..--...+++.||+..+.+...-.+.|.
T Consensus 191 GIGGt--~d~a~~laK~Allr~i~~~n-~~~~~a~lE~eLl~~iN~lGIGp~GlGG~tTal~V~Ie~~p~H~As 261 (280)
T PRK06246 191 GIGGT--FDKAAKLAKKALLRPIGERN-PDPEIAALEEELLEEINKLGIGPMGLGGKTTALDVKIETYPCHIAS 261 (280)
T ss_pred EeCCC--HHHHHHHHHHHhcCcccCCC-CChHHHHHHHHHHHHHHhcCcCCCccCCceEEEEEEEeecCCcccC
Confidence 55665 55555555555543211111 1111222222233334444444445657788887777654444433
No 42
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=23.11 E-value=48 Score=25.45 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=17.2
Q ss_pred HHHHHHhCCCCCCeEEEEEEcCCCCCCCCC
Q 025066 202 LVDEALKRKSGDNLAVVVVCFQSQPPPNLI 231 (258)
Q Consensus 202 l~~~a~~~g~~DNiTvivv~~~~~~~~~~~ 231 (258)
|++.|.+.....|+..+|+.|++.|.....
T Consensus 24 Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~ 53 (157)
T PF06574_consen 24 LIKKAVEIAKEKGLKSVVLTFDPHPKEVLN 53 (157)
T ss_dssp HHHHHHHHHHHCT-EEEEEEESS-CHHHHS
T ss_pred HHHHHhhhhhhcccceEEEEcccCHHHHhc
Confidence 333343333448889999999877654444
No 43
>PRK02391 heat shock protein HtpX; Provisional
Probab=22.71 E-value=1.1e+02 Score=26.28 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=26.2
Q ss_pred CeEEEeecCCCCeEEEEecCCCcccCChhHHHHHHHHHH
Q 025066 151 PELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRL 189 (258)
Q Consensus 151 p~~~~~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~ 189 (258)
|.-...-..+....+ +.|||+.+.++++|+..++...+
T Consensus 104 ~NAfa~G~~~~~~~V-~vt~gLl~~L~~~El~aVlaHEl 141 (296)
T PRK02391 104 PNAFATGRSPKNAVV-CVTTGLMRRLDPDELEAVLAHEL 141 (296)
T ss_pred CceEEecCCCCCcEE-EecHHHHhhCCHHHHHHHHHHHH
Confidence 444444444445445 89999999999999988765433
No 44
>PRK03982 heat shock protein HtpX; Provisional
Probab=21.62 E-value=1.4e+02 Score=25.41 Aligned_cols=38 Identities=11% Similarity=0.258 Sum_probs=26.4
Q ss_pred CeEEEeecCCCCeEEEEecCCCcccCChhHHHHHHHHHH
Q 025066 151 PELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRL 189 (258)
Q Consensus 151 p~~~~~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~ 189 (258)
|.-...-..+.+..+ ..|||+.+.++++|+..++...+
T Consensus 96 ~NAfa~G~~~~~~~V-~vt~gLl~~l~~~El~AVlAHEl 133 (288)
T PRK03982 96 PNAFATGRDPKHAVV-AVTEGILNLLNEDELEGVIAHEL 133 (288)
T ss_pred cceEEeccCCCCeEE-EeehHHHhhCCHHHHHHHHHHHH
Confidence 444444444555454 78999999999999988765433
No 45
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.39 E-value=69 Score=25.75 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=21.9
Q ss_pred CCCCeEEEEecCCCcccCChhHHHHHHHHHHH
Q 025066 159 TEEDEFLIIACDGVWDVFMSQNAVDFARRRLQ 190 (258)
Q Consensus 159 ~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~~ 190 (258)
.+||++|||||-| +.-..+.+.+.+.+..+
T Consensus 39 ~pGdRvlvl~taG--NLA~tQaV~~ll~e~~~ 68 (255)
T COG3484 39 LPGDRVLVLCTAG--NLAITQAVLHLLDERIQ 68 (255)
T ss_pred CCCceEEEEEecC--ccHHHHHHHHHHHHHhh
Confidence 5799999999999 33456666676666554
No 46
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=21.32 E-value=1.7e+02 Score=24.77 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=18.3
Q ss_pred HHHHHhccccccCCCCceEEEEEEeCCeEEEEe
Q 025066 45 SAFAEACSLDAALASGTTALAALVFGRRLVVAN 77 (258)
Q Consensus 45 ~~i~~~~~~~~~~~~gtT~~~~~i~~~~l~~an 77 (258)
+.+.+..--...+++.||++.+.+...-.++|.
T Consensus 222 e~iN~lGIGp~GlGG~tTal~V~Ie~~p~H~As 254 (273)
T TIGR00722 222 EEINSLGIGPMGLGGKTTALDVKIESAHCHTAS 254 (273)
T ss_pred HHHHhcCcCCCccCCCeEEEEEEEeecCCcccC
Confidence 333344444445557788887777654444433
No 47
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=21.30 E-value=3.1e+02 Score=19.48 Aligned_cols=56 Identities=11% Similarity=-0.021 Sum_probs=38.1
Q ss_pred EecCCCcccCChhHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhCCC-CCCeEEEEEEc
Q 025066 167 IACDGVWDVFMSQNAVDFARRRLQEH--NDPVMCSKDLVDEALKRKS-GDNLAVVVVCF 222 (258)
Q Consensus 167 L~SDGl~d~l~~~ei~~ii~~~~~~~--~~~~~~a~~l~~~a~~~g~-~DNiTvivv~~ 222 (258)
-.||.+-+.++-.++.+.+.+.++.. ...+..|+.+.+..+.... .+-+++-+-+.
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp 99 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSKP 99 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEeC
Confidence 45788988999999999888766543 3566778888888776533 44444444443
No 48
>PRK05457 heat shock protein HtpX; Provisional
Probab=21.07 E-value=1.5e+02 Score=25.16 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCeEEEeecCCCCeEEEEecCCCcccCChhHHHHHHHHHH
Q 025066 150 EPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRL 189 (258)
Q Consensus 150 ~p~~~~~~l~~~d~~LvL~SDGl~d~l~~~ei~~ii~~~~ 189 (258)
.|.-...-..+.. -+|+.|+|+.+.++++|+..++...+
T Consensus 104 ~~NAfa~G~~~~~-~~V~vt~gLl~~L~~~El~aVlAHEl 142 (284)
T PRK05457 104 EINAFATGASKNN-SLVAVSTGLLQNMSRDEVEAVLAHEI 142 (284)
T ss_pred CceEEEecCCCCC-eEEEeehHHhhhCCHHHHHHHHHHHH
Confidence 3444444555555 45589999999999999998876544
No 49
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=20.34 E-value=27 Score=23.89 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=16.7
Q ss_pred cCCCCeEEEEecCCCcccCChhHHHHH
Q 025066 158 LTEEDEFLIIACDGVWDVFMSQNAVDF 184 (258)
Q Consensus 158 l~~~d~~LvL~SDGl~d~l~~~ei~~i 184 (258)
+.++|.+| |.-|||+-.+........
T Consensus 16 ~~~~D~il-LiqDgV~~a~~~~~~~~~ 41 (88)
T PF04077_consen 16 LSEGDAIL-LIQDGVYAALKGSPYFKL 41 (88)
T ss_dssp --TT-EEE-E-GGGGGGGBTTSTTHHH
T ss_pred cCCCCEEE-eeHHHHHHHhcCCHHHHH
Confidence 36788555 999999999887665544
No 50
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=20.27 E-value=1.9e+02 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCCCeEEEEEEcCCC
Q 025066 200 KDLVDEALKRKSGDNLAVVVVCFQSQ 225 (258)
Q Consensus 200 ~~l~~~a~~~g~~DNiTvivv~~~~~ 225 (258)
+.|+..+...-..||+||+++.....
T Consensus 168 ~~LVA~SV~gL~~enVtVV~~~~~~~ 193 (252)
T PRK15324 168 KRFLKNSFADVDYDNISVVLSERSDA 193 (252)
T ss_pred HHHHHhcCCCCCcccEEEEEEEcccc
Confidence 55777788888999999999965543
No 51
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.01 E-value=1.7e+02 Score=15.91 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.0
Q ss_pred CCeEEEEecCcceEEEEeC
Q 025066 70 GRRLVVANVGDCRAVLCRR 88 (258)
Q Consensus 70 ~~~l~~anvGDSr~~~~~~ 88 (258)
++++|++|-|+..+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 4678999988888888753
Done!