BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025067
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UUL|D Chain D, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 161 QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219
+D+ + L++ ++V D L CL + ET S L PG S + G + + AA
Sbjct: 84 RDMEIILRYVTYAVFAGDASVLEDRCLNGLRETYSALGTPGSS---VAVGVGKMKEAALA 140
Query: 220 LGLRPCGFRPQHSSKLGNEF 239
+ P G P S L +E
Sbjct: 141 IVNDPAGITPGDCSALASEI 160
>pdb|2UUN|B Chain B, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|F Chain F, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|H Chain H, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|J Chain J, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|L Chain L, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|N Chain N, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|P Chain P, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|R Chain R, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|T Chain T, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|V Chain V, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|X Chain X, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 161 QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219
+D+ + L++ ++V D L CL + ET S L PG S + G + + AA
Sbjct: 84 RDMEIILRYVTYAVFAGDASALEDRCLNGLRETYSALGTPGSS---VAVGVGKMKEAALA 140
Query: 220 LGLRPCGFRPQHSSKLGNEF 239
+ P G P S L +E
Sbjct: 141 IVNDPAGITPGDCSALASEI 160
>pdb|2UUL|B Chain B, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|F Chain F, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|J Chain J, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|L Chain L, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|N Chain N, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|P Chain P, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|R Chain R, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|T Chain T, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|V Chain V, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|X Chain X, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 161 QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219
+D+ + L++ ++V D L CL + ET S L PG S + G + + AA
Sbjct: 84 RDMEIILRYVTYAVFAGDASALEDRCLNGLRETYSALGTPGSS---VAVGVGKMKEAALA 140
Query: 220 LGLRPCGFRPQHSSKLGNEF 239
+ P G P S L +E
Sbjct: 141 IVNDPAGITPGDCSALASEI 160
>pdb|2UUN|D Chain D, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 161 QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219
+D+ + L++ ++V D L CL + ET S L PG S + G + + AA
Sbjct: 84 RDMEIILRYVTYAVFAGDASALEDRCLNGLRETYSALGTPGSS---VAVGVGKMKEAALA 140
Query: 220 LGLRPCGFRPQHSSKLGNEF 239
+ P G P S L +E
Sbjct: 141 IVNDPAGITPGDCSALASEI 160
>pdb|2UUL|H Chain H, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 161 QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219
+D+ + L++ ++V D L CL + ET S L PG S + G + + AA
Sbjct: 84 RDMEIILRYVTYAVFAGDASALEDRCLNGLRETYSALGTPGSS---VAVGVGKMKEAALA 140
Query: 220 LGLRPCGFRPQHSSKLGNEF 239
+ P G P S L +E
Sbjct: 141 IVNDPAGITPGDCSALASEI 160
>pdb|2C7J|B Chain B, Phycoerythrocyanin From Mastigocladus Laminosus, 295 K,
3.0 A
pdb|2C7K|B Chain B, Laue Structure Of Phycoerythrocyanin From Mastigocladus
Laminosus
pdb|2C7L|B Chain B, Low Temperature Structure Of Phycoerythrocyanin From
Mastigocladus Laminosus
Length = 172
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 154 FYDYNQP---QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209
F+ NQ +DL L++ +SV+ D + CL + ET L PGD+ + +G
Sbjct: 74 FHHRNQAACIRDLGFILRYVTYSVLAGDTSVMDDRCLNGLRETYQALGTPGDA---VASG 130
Query: 210 EVQKERAAELLGLRPCGFRPQHSSKLGNEF 239
+ + AA + P G S+L +E
Sbjct: 131 IKKMKEAALKIANDPNGITKGDCSQLMSEL 160
>pdb|2UUM|X Chain X, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 161 QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219
+D+ + L++ ++V D L CL + ET L PG S + G + + AA
Sbjct: 84 RDMEIILRYVTYAVFAGDASVLEDRCLNGLRETYLALGTPGSS---VAVGVKKMKEAALA 140
Query: 220 LGLRPCGFRPQHSSKLGNEF 239
+ P G P S L +E
Sbjct: 141 IVNDPAGITPGDCSALASEI 160
>pdb|2UUM|B Chain B, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|D Chain D, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|F Chain F, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|H Chain H, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|J Chain J, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|L Chain L, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|N Chain N, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|P Chain P, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|R Chain R, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|T Chain T, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|V Chain V, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 172
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 161 QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219
+D+ + L++ ++V D L CL + ET L PG S + G + + AA
Sbjct: 84 RDMEIILRYVTYAVFAGDASVLEDRCLNGLRETYLALGTPGSS---VAVGVGKMKEAALA 140
Query: 220 LGLRPCGFRPQHSSKLGNEF 239
+ P G P S L +E
Sbjct: 141 IVNDPAGITPGDCSALASEI 160
>pdb|1HA7|B Chain B, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|D Chain D, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|F Chain F, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|H Chain H, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|J Chain J, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|L Chain L, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|N Chain N, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|P Chain P, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|R Chain R, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|T Chain T, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|V Chain V, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
pdb|1HA7|X Chain X, Structure Of A Light-Harvesting Phycobiliprotein,
C-Phycocyanin From Spirulina Platensis At 2.2a
Resolution
Length = 172
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 161 QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219
+D+ + L++ ++V D L CL + ET L PG S + G + + AA
Sbjct: 84 RDMEIILRYVTYAVFAGDASVLEDRCLNGLRETYLALGTPGSS---VAVGVGKMKEAALA 140
Query: 220 LGLRPCGFRPQHSSKLGNEF 239
+ P G P S L +E
Sbjct: 141 IVNDPAGITPGDCSALASEI 160
>pdb|1GH0|B Chain B, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|D Chain D, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|F Chain F, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|H Chain H, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|J Chain J, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|L Chain L, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|N Chain N, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|P Chain P, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|R Chain R, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|T Chain T, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|V Chain V, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|X Chain X, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
Length = 172
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 161 QDLPLELKHA-FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219
+D+ + L++ ++V D L CL + ET L PG S + G + + AA
Sbjct: 84 RDMEIILRYVTYAVFAGDASVLEDRCLNGLRETYLALGTPGSS---VAVGVGKMKEAALA 140
Query: 220 LGLRPCGFRPQHSSKLGNEF 239
+ P G P S L +E
Sbjct: 141 IVNDPAGITPGDCSALASEI 160
>pdb|2DT7|B Chain B, Solution Structure Of The Second Surp Domain Of Human
Splicing Factor Sf3a120 In Complex With A Fragment Of
Human Splicing Factor Sf3a60
Length = 85
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 175 VVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHS 232
+ DPP +S L+ V T F+AR G L L + Q+ + L RPQHS
Sbjct: 21 IADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFL-------RPQHS 71
>pdb|1WDC|B Chain B, Scallop Myosin Regulatory Domain
pdb|1B7T|Y Chain Y, Myosin Digested By Papain
pdb|1KK7|Y Chain Y, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|B Chain B, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|B Chain B, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|B Chain B, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Y Chain Y, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Y Chain Y, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|B Chain B, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JTD|B Chain B, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
pdb|3JVT|B Chain B, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 160 PQDLPLELKHAFSVVVVD-PPYLSKECLEKVSETVSFLARPGDSKLL 205
PQ E+K AFS++ VD ++SKE ++ +SE L R D K L
Sbjct: 13 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQ---LGRAPDDKEL 56
>pdb|1SCM|B Chain B, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 145
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 160 PQDLPLELKHAFSVVVVD-PPYLSKECLEKVSETVSFLARPGDSKLL 205
PQ E+K AFS++ VD ++SKE ++ +SE L R D K L
Sbjct: 2 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQ---LGRAPDDKEL 45
>pdb|1KK8|B Chain B, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 139
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 160 PQDLPLELKHAFSVVVVD-PPYLSKECLEKVSETVSFLARPGDSKLL 205
PQ E+K AFS++ VD ++SKE ++ +SE L R D K L
Sbjct: 1 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQ---LGRAPDDKEL 44
>pdb|1DFK|Y Chain Y, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Y Chain Y, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|W Chain W, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 139
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 160 PQDLPLELKHAFSVVVVD-PPYLSKECLEKVSETVSFLARPGDSKLL 205
PQ E+K AFS++ VD ++SKE ++ +SE L R D K L
Sbjct: 2 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQ---LGRAPDDKEL 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,763,396
Number of Sequences: 62578
Number of extensions: 239648
Number of successful extensions: 508
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 19
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)