BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025067
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WVE0|N6MT2_HUMAN N(6)-adenine-specific DNA methyltransferase 2 OS=Homo sapiens
GN=N6AMT2 PE=2 SV=1
Length = 214
Score = 207 bits (526), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 38 EDDDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTA 97
EDD+ P LS+ ALAALQEF +EQ Q E E D + ++ E+W+LSQFWY TA
Sbjct: 5 EDDETPQLSAHALAALQEFYAEQKQQIEPG----EDDKYNIGIIEENWQLSQFWYSQETA 60
Query: 98 ETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQYGSDFAFYD 156
+AQEA++ + R+AC++ P++Y L+++ R S I EYD RF YG +F FYD
Sbjct: 61 LQLAQEAIAAVGEG-GRIACVSAPSVYQKLRELCRENFSIYIFEYDKRFAMYGEEFIFYD 119
Query: 157 YNQPQDLPLELK-HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKER 215
YN P DLP + H+F +V+ DPPYLS+ECL K SETV +L R K+LL TG + +E+
Sbjct: 120 YNNPLDLPERIAAHSFDIVIADPPYLSEECLRKTSETVKYLTR---GKILLCTGAIMEEQ 176
Query: 216 AAELLGLRPCGFRPQHSSKLGNEFRLFTNYGPGTRLG 252
AAELLG++ C F P+H+ L NEFR + NY G G
Sbjct: 177 AAELLGVKMCTFVPRHTRNLANEFRCYVNYDSGLDCG 213
>sp|Q9CY45|N6MT2_MOUSE N(6)-adenine-specific DNA methyltransferase 2 OS=Mus musculus
GN=N6amt2 PE=2 SV=1
Length = 214
Score = 202 bits (513), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 139/213 (65%), Gaps = 10/213 (4%)
Query: 38 EDDDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTA 97
EDDD P LSS LAALQEF +EQ Q+ N D V ++ E+W+LSQFWY TA
Sbjct: 5 EDDDIPQLSSHTLAALQEFYAEQKQSV----NPRGDDKYNVGVIEENWQLSQFWYSQDTA 60
Query: 98 ETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQYGSDFAFYD 156
+A+EA+ + R+AC++ P++Y L+++ R + S I EYD RF YG +F FYD
Sbjct: 61 LRLAREAIDAAGEG-GRIACVSAPSVYQKLRELCREDSSVYIFEYDRRFAIYGDEFIFYD 119
Query: 157 YNQPQDLPLELK-HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKER 215
YN P +LP + H+F +VV DPPYLS+ECL K SET+ FL R K+LL TG + +E+
Sbjct: 120 YNHPLELPERIAAHSFDLVVADPPYLSEECLRKTSETIQFLTR---GKILLCTGAIMEEQ 176
Query: 216 AAELLGLRPCGFRPQHSSKLGNEFRLFTNYGPG 248
AA+LLG++ C F P+HS L NEFR +TNY G
Sbjct: 177 AAQLLGVKMCKFIPEHSRNLANEFRCYTNYDSG 209
>sp|Q17QF2|N6MT2_BOVIN N(6)-adenine-specific DNA methyltransferase 2 OS=Bos taurus
GN=N6AMT2 PE=2 SV=1
Length = 226
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 136/213 (63%), Gaps = 9/213 (4%)
Query: 38 EDDDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTA 97
E++ P LSS ALAALQEF +EQ + D + ++ E+W+LSQFWY TA
Sbjct: 5 ENEGPPQLSSYALAALQEFYAEQQHHH---SDLCGDDKYNIGIIEENWQLSQFWYSPETA 61
Query: 98 ETVAQEAVSLCSDSDSRVACIACPTLYAYLK-KIRPEVSPKILEYDMRFEQYGSDFAFYD 156
+A++AV+ + R+AC++ P++Y L+ + R +VS I EYD RF YG DF +YD
Sbjct: 62 TCLAEDAVAAAGEG-GRIACVSAPSVYQKLRERHRDDVSVCIFEYDRRFAIYGEDFVYYD 120
Query: 157 YNQPQDLPLEL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKER 215
Y P DLP + H+F +VV DPPYLS+ECL K+SET+ L R K+LL TG V ++
Sbjct: 121 YKNPVDLPERIATHSFDIVVADPPYLSEECLRKMSETIKLLTR---GKILLCTGAVMEDA 177
Query: 216 AAELLGLRPCGFRPQHSSKLGNEFRLFTNYGPG 248
AA+LLG++ C F P+H+ LGNEFR F NY G
Sbjct: 178 AAKLLGVKMCKFIPEHTRTLGNEFRCFVNYNSG 210
>sp|Q6GN98|N6MT2_XENLA N(6)-adenine-specific DNA methyltransferase 2 OS=Xenopus laevis
GN=n6amt2 PE=2 SV=1
Length = 220
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 141/211 (66%), Gaps = 7/211 (3%)
Query: 37 EEDDDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVT 96
++DD P LSS ALAALQEF +EQ Q E + + + V V EDW+LSQFWY T
Sbjct: 5 DDDDGVPQLSSHALAALQEFYAEQQQR-EAQKLGPDHEKFSVGSVEEDWQLSQFWYSDET 63
Query: 97 AETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPE-VSPKILEYDMRFEQYGSDFAFY 155
A ++A+EA+ +C + + R+ACI+ P++Y L+ + E V ++LEYD RF YG DF FY
Sbjct: 64 ALSLAKEAIEVCGE-NGRIACISAPSIYQKLRGLAGESVYIRLLEYDNRFAVYGDDFVFY 122
Query: 156 DYNQPQDLPLELK-HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKE 214
DYN+P LP L+ +F +V+ DPPYLS+ECL+ ++T+ L+R K++L TG V ++
Sbjct: 123 DYNEPLKLPESLEPSSFDIVIADPPYLSEECLQNTAQTIKHLSR---GKIILCTGAVMED 179
Query: 215 RAAELLGLRPCGFRPQHSSKLGNEFRLFTNY 245
AA+ LGL+ C F P+H+ L NEFR ++NY
Sbjct: 180 LAAQKLGLKKCKFIPEHTRNLANEFRCYSNY 210
>sp|Q5ZKT6|N6MT2_CHICK N(6)-adenine-specific DNA methyltransferase 2 OS=Gallus gallus
GN=N6AMT2 PE=2 SV=1
Length = 213
Score = 184 bits (467), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 131/208 (62%), Gaps = 7/208 (3%)
Query: 43 PMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQ 102
P LSS LAALQEF EQ Q E + + V + EDW+LSQFWY TA +A
Sbjct: 9 PQLSSHTLAALQEFYLEQQQ-REGMKTSQGFNQYSVGSIEEDWQLSQFWYSDETASCLAN 67
Query: 103 EAVSLCSDSDSRVACIACPTLYAYLK-KIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQ 161
EA+ + + R+AC++ P++Y L+ + + S ILEYD RF YG +F FYDYN P
Sbjct: 68 EAI-VAAGKGGRIACVSAPSVYQKLREQGGADFSVCILEYDRRFSVYGEEFIFYDYNNPL 126
Query: 162 DLPLEL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220
+LP L H+F +VV DPPYLS+ECL+K +ET+ +L + K+LL TG + +E+AA+ L
Sbjct: 127 NLPEHLLPHSFDIVVADPPYLSEECLQKTAETIKYLTK---GKILLCTGAIMEEQAAKHL 183
Query: 221 GLRPCGFRPQHSSKLGNEFRLFTNYGPG 248
G++ C F P+HS L NEFR + NY G
Sbjct: 184 GVKICKFIPKHSRNLANEFRCYVNYASG 211
>sp|Q5WRN3|N6MT2_CAEEL N(6)-adenine-specific DNA methyltransferase 2 homolog
OS=Caenorhabditis elegans GN=M142.8 PE=3 SV=1
Length = 218
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 16/219 (7%)
Query: 36 VEEDDDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAV 95
+ + DD P LS+ LAAL F +EQ + E Q S + + EDW+LSQFWYD
Sbjct: 1 MSDTDDIPQLSADTLAALSMFQAEQQEKIEQLQ------SGIIEKIDEDWQLSQFWYDDE 54
Query: 96 TAETVAQEAVSLCSDSD----SRVACIACPTLYAYLKKIRP----EVSPKILEYDMRFE- 146
T+ + E V+ + +R+ C++ PTL + + ++ + E+D RF
Sbjct: 55 TSRKLVAEGVAAALEGSEARPARIGCVSSPTLVKFFHETEEYKTGQIQLTLFEFDDRFGL 114
Query: 147 QYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206
++ ++F YDY P DLP EL F V++ DPP+L+ ECL K + ++ L + D K+LL
Sbjct: 115 KFPTEFVHYDYKHPTDLPAELLAKFDVIIADPPFLAAECLIKTAHSIRLLGK-SDVKVLL 173
Query: 207 LTGEVQKERAAELLGLRPCGFRPQHSSKLGNEFRLFTNY 245
TG + ++ A+ L+ + F P+H++ L N+F F NY
Sbjct: 174 CTGAIMEDYASRLMAMHRTSFEPRHANNLANDFSCFANY 212
>sp|Q6NYP8|N6MT2_DANRE N(6)-adenine-specific DNA methyltransferase 2 OS=Danio rerio
GN=n6amt2 PE=2 SV=1
Length = 166
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 102/164 (62%), Gaps = 9/164 (5%)
Query: 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRP----EVSPKILEYD 142
+SQFWY TA +A+E + + R+AC++ P++Y LK++ VS +LE+D
Sbjct: 1 MSQFWYSEETASRLAEELLQQAGE-HGRIACLSAPSVYQKLKQLESVRSDGVSAVLLEFD 59
Query: 143 MRFEQYGSDFAFYDYNQPQDLPLEL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGD 201
RF YG +F FYDYN P LP +L +F +V+ DPPYLS+ECL KV+ TV L +
Sbjct: 60 RRFAAYGDEFVFYDYNNPLCLPEDLLPQSFDIVIADPPYLSEECLSKVTLTVKHLTK--- 116
Query: 202 SKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKLGNEFRLFTNY 245
K+LL TG + +E A +LL L+ C F P+H+ L NEFR + NY
Sbjct: 117 GKILLCTGAIMEEHAGKLLDLKMCSFLPRHNHNLANEFRCYVNY 160
>sp|Q9VMH7|N6MT2_DROME N(6)-adenine-specific DNA methyltransferase 2 homolog OS=Drosophila
melanogaster GN=CG9154 PE=2 SV=2
Length = 223
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 11/216 (5%)
Query: 40 DDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAET 99
DD L + LA L EFL E+++ +N+ + + + A EDW+LSQFWY T
Sbjct: 2 DDDISLPADTLAILNEFLLERSKREAEEENQIANKTGKDAQFEEDWQLSQFWYSTETKHA 61
Query: 100 VAQEAVSLCSD-----SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAF 154
+ L ++ D +A ++CP+LY +++I V I E+D RFE YG+DF
Sbjct: 62 LRDVVRKLLAERTEDSGDFSIALLSCPSLYKDIREIHDTVH--IFEFDKRFEAYGTDFVH 119
Query: 155 YDYNQPQDLPLELK---HAFSVVVVDPPYLSKECLEKVSETVSFLAR-PGDSKLLLLTGE 210
YD N P LK + ++V DPP+LS+EC+ K E ++ L R +SK++L +GE
Sbjct: 120 YDLNCVGSNPDYLKEHHQQYDLIVADPPFLSQECIAKTCEIITRLQRNQKESKVILCSGE 179
Query: 211 VQKERAAELLGLRPCGFRPQHSSKLGNEFRLFTNYG 246
V + L + C FRP+H LGN+F + N+
Sbjct: 180 VVEPWLTARLPVLKCSFRPEHERNLGNKFVSYANFN 215
>sp|Q86A24|N6MT2_DICDI N(6)-adenine-specific DNA methyltransferase 2 homolog
OS=Dictyostelium discoideum GN=DDB_G0272708 PE=3 SV=1
Length = 211
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 19/221 (8%)
Query: 40 DDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAET 99
DD LS ++L+ALQ+F + Q+K E +SEDW+LSQFWY+ T++
Sbjct: 6 DDEITLSKESLSALQDFYKSREVEQ---QDKFE--------ISEDWQLSQFWYEEETSKF 54
Query: 100 VAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKI-LEYDMRFEQYGSDFAFYDYN 158
VA + + + V C++ P++Y L K + EYD RF+ YG F FYDYN
Sbjct: 55 VAN-VIEQETIGGNVVVCLSTPSIYKVLHKNNNLLLNNNLFEYDKRFDVYGEKFHFYDYN 113
Query: 159 QPQD-LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAA 217
P+D + +LK + +DPP+LS+EC+EKV++T++ L +P ++LLLLTG +Q
Sbjct: 114 NPEDGISEQLKGNVDYICLDPPFLSEECIEKVAKTIALLRKPT-TRLLLLTGRIQWNNIQ 172
Query: 218 ELL-GLRPCGFRPQHSSKLGNEFRLFTNYGPGTRLGGWEQE 257
+ L + C F P+H +L N+F +NY ++L G E +
Sbjct: 173 KYLPEMMICEFEPKH-PRLQNDFFCCSNY--HSKLLGLENK 210
>sp|P53200|AML1_YEAST N(6)-adenine-specific DNA methyltransferase-like 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=AML1 PE=1
SV=2
Length = 248
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 29/228 (12%)
Query: 45 LSSQALAALQEFLSEQNQTSETAQNKTESDSDE----------VALVSEDWRLSQFWYDA 94
LS+ ALAAL+EF E+ Q E Q K ++DE + L EDW+LSQFWY
Sbjct: 14 LSANALAALEEFKREEQQHQEAFQ-KLYDETDEDFQKKKKEEGMKLFKEDWQLSQFWYSD 72
Query: 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPK----ILEYDMRFEQY-G 149
TA +A +A+ +D ++ +A ++ P++YA ++K P + E+D RFE G
Sbjct: 73 DTAAILA-DAILEGADENTVIAIVSAPSVYAAIQKKPTNEIPTEHIYLFEFDKRFELLAG 131
Query: 150 SD-FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDS------ 202
D F FYDYN+P D E+K +++DPP+L+++C K S T L P D+
Sbjct: 132 RDHFFFYDYNKPLDFSDEIKGKVDRLLIDPPFLNEDCQTKSSITAKCLLAPNDNSKTKKG 191
Query: 203 ----KLLLLTGEVQKERAAELLG-LRPCGFRPQHSSKLGNEFRLFTNY 245
+L+ TGE E +++ R F P+HS+ L NEFR + N+
Sbjct: 192 VFKHRLISCTGERMSEVISKVYSDTRITTFLPEHSNGLSNEFRCYANF 239
>sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP7 PE=1 SV=1
Length = 742
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 165 LELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQK 213
L+L H SV+ +DPP+ ++ L +V T G+S L LL GE +K
Sbjct: 527 LDLPHVGSVIELDPPFAVEDHLHRVGRTAR-AGEKGESLLFLLPGEEEK 574
>sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP7 PE=3 SV=1
Length = 742
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 165 LELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQK 213
L+L H SV+ +DPP+ ++ L +V T G+S L LL GE +K
Sbjct: 527 LDLPHVGSVIELDPPFAVEDHLHRVGRTAR-AGEKGESLLFLLPGEEEK 574
>sp|Q01118|SCN7A_HUMAN Sodium channel protein type 7 subunit alpha OS=Homo sapiens
GN=SCN7A PE=2 SV=2
Length = 1682
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 24 RKQNAPKN-----DDVEVEEDDDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEV 78
+ QN PK+ ++V V+ED LS L+ Q+FL ++ ++S T +N TE++S +
Sbjct: 769 KTQNVPKDTMDHVNEVYVKEDISDHTLSE--LSNTQDFLKDKEKSSGTEKNATENESQSL 826
>sp|A6US51|Y1427_METVS UPF0218 protein Mevan_1427 OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_1427 PE=3 SV=1
Length = 158
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 151 DFAFYDYNQPQDLPLELKHAFSVV--VVDPP-YLSKECLEKVSETVSFLARPGDSKL-LL 206
D + D+ +++P+E+ H F V V +PP Y+S E +E+ + +L+ D + L+
Sbjct: 49 DLSILDFKTKRNVPVEIPHKFKTVFEVYNPPGYISDEAIER----IKYLSTIDDRDMALI 104
Query: 207 LTGEVQKERAAELLGLRPCGFRPQHSS 233
+ GE +LL L + P+ +S
Sbjct: 105 VKGE------EDLLTLPVIKYFPEDTS 125
>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3
PE=2 SV=1
Length = 665
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 120 CP-TLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDP 178
CP +Y YLK+I P + PK+ + + D +NQ L + H F + +
Sbjct: 560 CPEKMYLYLKQIEPSIYPKLFQKSL-----DPDL----FNQ----ILRILHDF-YIEKEE 605
Query: 179 PYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKLGNE 238
P L E L+++SE F D ++ ++G +K ++ G + +L +
Sbjct: 606 PSLILEILQRLSELKRF-----DMAVMFMSGSEKKITQVLFSHMKHMGLKDTSVEQLEKK 660
Query: 239 FRLFT 243
+ +F+
Sbjct: 661 YAVFS 665
>sp|Q612A4|VATC_CAEBR V-type proton ATPase subunit C OS=Caenorhabditis briggsae GN=vha-11
PE=3 SV=1
Length = 385
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAF 154
V +E + ++ + D+D ++ +A L L + + + +L D+
Sbjct: 123 VLSEIIGKQITQI--DNDLKMKSLAYNNLKNALASMDRKTTGSLLTKDLA---------- 170
Query: 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGE 210
D + +D L ++ +++VV P L KE K + T+S + PG SKLL GE
Sbjct: 171 -DLVKAEDFVLNSEYLQTIIVVVPKILVKEWETKYA-TLSSMVVPGSSKLLTEEGE 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,892,303
Number of Sequences: 539616
Number of extensions: 3718666
Number of successful extensions: 9893
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 9800
Number of HSP's gapped (non-prelim): 66
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)