Query 025067
Match_columns 258
No_of_seqs 168 out of 244
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3350 Uncharacterized conser 100.0 3.9E-78 8.6E-83 525.0 16.7 206 37-248 4-212 (217)
2 PF10237 N6-adenineMlase: Prob 100.0 1.4E-64 3E-69 432.8 16.8 160 86-247 1-162 (162)
3 PF01861 DUF43: Protein of unk 98.2 6E-06 1.3E-10 75.7 9.6 144 83-231 16-180 (243)
4 KOG4399 C2HC-type Zn-finger pr 97.8 3.5E-06 7.6E-11 78.2 -1.2 76 78-157 87-163 (325)
5 PRK09328 N5-glutamine S-adenos 97.5 0.0053 1.1E-07 54.6 15.6 161 44-220 44-250 (275)
6 TIGR03534 RF_mod_PrmC protein- 97.3 0.0069 1.5E-07 52.8 13.4 173 43-231 23-243 (251)
7 TIGR03704 PrmC_rel_meth putati 97.1 0.0022 4.7E-08 58.1 8.5 127 90-220 64-228 (251)
8 PRK14967 putative methyltransf 96.9 0.015 3.3E-07 51.0 11.4 117 88-211 14-162 (223)
9 PRK14966 unknown domain/N5-glu 96.6 0.078 1.7E-06 52.4 14.9 133 95-232 236-408 (423)
10 TIGR00536 hemK_fam HemK family 96.5 0.077 1.7E-06 48.6 13.4 167 44-220 49-256 (284)
11 TIGR00537 hemK_rel_arch HemK-r 96.3 0.024 5.2E-07 47.8 8.2 113 98-220 9-153 (179)
12 COG1568 Predicted methyltransf 95.7 0.019 4.1E-07 54.7 5.4 94 84-181 125-232 (354)
13 PRK10901 16S rRNA methyltransf 95.7 0.11 2.3E-06 50.6 10.7 121 93-220 229-388 (427)
14 PRK15128 23S rRNA m(5)C1962 me 95.6 0.052 1.1E-06 52.8 8.2 116 84-208 198-339 (396)
15 TIGR01177 conserved hypothetic 95.0 0.19 4.1E-06 47.0 9.7 124 90-218 160-306 (329)
16 PRK11805 N5-glutamine S-adenos 95.0 0.37 7.9E-06 45.2 11.5 168 43-220 66-274 (307)
17 PF05175 MTS: Methyltransferas 94.9 0.27 5.9E-06 41.5 9.5 119 94-221 17-155 (170)
18 PRK01544 bifunctional N5-gluta 94.6 0.2 4.3E-06 50.1 9.4 114 113-232 140-296 (506)
19 TIGR03533 L3_gln_methyl protei 94.5 0.86 1.9E-05 42.1 12.7 167 44-220 55-262 (284)
20 PRK09489 rsmC 16S ribosomal RN 93.9 0.49 1.1E-05 45.1 9.9 114 98-221 186-318 (342)
21 PRK14968 putative methyltransf 93.2 0.93 2E-05 37.5 9.5 67 111-182 23-102 (188)
22 PRK11783 rlmL 23S rRNA m(2)G24 92.7 0.3 6.5E-06 50.7 7.0 118 84-210 516-658 (702)
23 PRK11524 putative methyltransf 92.1 0.36 7.8E-06 44.3 6.0 42 168-210 25-82 (284)
24 PRK14903 16S rRNA methyltransf 91.3 1.1 2.4E-05 43.9 8.8 125 90-221 219-383 (431)
25 PRK14901 16S rRNA methyltransf 91.3 1.1 2.3E-05 43.8 8.6 127 90-220 234-400 (434)
26 KOG2671 Putative RNA methylase 91.2 0.14 3E-06 50.1 2.4 42 145-189 257-303 (421)
27 TIGR00446 nop2p NOL1/NOP2/sun 91.1 0.64 1.4E-05 42.3 6.5 126 90-222 52-217 (264)
28 PHA03412 putative methyltransf 91.0 1.1 2.5E-05 41.3 8.0 95 79-183 22-127 (241)
29 PRK14902 16S rRNA methyltransf 90.8 1.2 2.5E-05 43.5 8.4 88 89-182 231-332 (444)
30 TIGR00563 rsmB ribosomal RNA s 90.5 1.6 3.4E-05 42.4 9.0 129 87-220 217-384 (426)
31 COG0742 N6-adenine-specific me 89.1 0.72 1.6E-05 41.1 5.0 13 170-182 114-126 (187)
32 cd02440 AdoMet_MTases S-adenos 88.2 3.5 7.6E-05 28.8 7.2 39 168-207 64-103 (107)
33 COG2890 HemK Methylase of poly 87.9 0.83 1.8E-05 42.4 4.8 169 43-220 46-250 (280)
34 TIGR00438 rrmJ cell division p 87.8 5.9 0.00013 33.6 9.6 118 111-230 32-171 (188)
35 PF03602 Cons_hypoth95: Conser 87.5 0.3 6.6E-06 42.5 1.6 27 169-198 113-139 (183)
36 COG1041 Predicted DNA modifica 86.2 0.43 9.3E-06 46.2 1.9 96 84-183 169-277 (347)
37 PF13659 Methyltransf_26: Meth 86.0 0.56 1.2E-05 36.0 2.2 16 168-183 68-83 (117)
38 PRK14904 16S rRNA methyltransf 85.6 2.3 5E-05 41.6 6.7 122 91-221 233-394 (445)
39 PRK10909 rsmD 16S rRNA m(2)G96 85.1 1.2 2.7E-05 39.3 4.2 80 112-198 54-145 (199)
40 PF01170 UPF0020: Putative RNA 85.1 0.64 1.4E-05 40.1 2.3 16 168-183 104-119 (179)
41 COG2263 Predicted RNA methylas 84.7 4 8.7E-05 36.9 7.2 98 79-183 12-121 (198)
42 PRK13699 putative methylase; P 84.7 2.8 6.1E-05 37.6 6.3 14 168-181 18-31 (227)
43 TIGR02085 meth_trns_rumB 23S r 83.6 3 6.5E-05 40.0 6.4 117 95-219 216-346 (374)
44 PRK13168 rumA 23S rRNA m(5)U19 82.8 2.8 6.1E-05 40.9 5.9 129 94-230 279-430 (443)
45 PRK00312 pcm protein-L-isoaspa 82.7 7.7 0.00017 33.5 8.1 108 86-209 56-176 (212)
46 PF10672 Methyltrans_SAM: S-ad 82.7 0.74 1.6E-05 43.3 1.8 87 84-181 101-206 (286)
47 PRK05031 tRNA (uracil-5-)-meth 82.5 2.8 6E-05 40.1 5.7 43 170-219 288-332 (362)
48 PRK00517 prmA ribosomal protei 81.6 17 0.00038 32.5 10.1 119 96-220 105-226 (250)
49 PRK11783 rlmL 23S rRNA m(2)G24 80.5 4.9 0.00011 41.9 7.1 73 169-246 302-382 (702)
50 TIGR00138 gidB 16S rRNA methyl 80.4 15 0.00033 31.6 9.0 109 111-229 42-164 (181)
51 PRK15001 SAM-dependent 23S rib 80.0 4.4 9.5E-05 39.5 6.1 123 92-221 208-355 (378)
52 COG0116 Predicted N6-adenine-s 78.9 5.1 0.00011 39.4 6.2 62 169-235 298-367 (381)
53 COG1092 Predicted SAM-dependen 77.4 6.2 0.00013 38.9 6.3 13 170-182 290-302 (393)
54 PF01555 N6_N4_Mtase: DNA meth 75.7 1.4 3E-05 37.1 1.2 13 171-183 1-13 (231)
55 TIGR00479 rumA 23S rRNA (uraci 73.7 6.9 0.00015 37.9 5.6 88 93-182 273-374 (431)
56 TIGR00095 RNA methyltransferas 73.6 4.1 9E-05 35.4 3.7 14 170-183 121-134 (189)
57 TIGR00571 dam DNA adenine meth 73.3 7.9 0.00017 35.4 5.6 55 170-227 172-243 (266)
58 PRK00811 spermidine synthase; 72.6 14 0.00031 34.0 7.2 37 111-147 76-114 (283)
59 PF05063 MT-A70: MT-A70 ; Int 70.7 2.3 5E-05 36.4 1.4 54 171-225 1-73 (176)
60 TIGR00417 speE spermidine synt 70.3 14 0.00031 33.6 6.5 71 111-181 72-156 (270)
61 KOG3420 Predicted RNA methylas 68.7 11 0.00024 33.4 5.1 95 84-183 20-127 (185)
62 PHA03411 putative methyltransf 68.6 5.3 0.00012 37.7 3.4 93 80-182 36-138 (279)
63 TIGR00080 pimt protein-L-isoas 67.9 32 0.0007 29.9 8.0 108 89-210 58-179 (215)
64 PRK05134 bifunctional 3-demeth 67.2 14 0.0003 32.1 5.6 93 111-209 48-152 (233)
65 PRK03522 rumB 23S rRNA methylu 67.0 9.9 0.00022 35.4 4.9 83 97-182 158-252 (315)
66 PRK10904 DNA adenine methylase 66.4 13 0.00028 34.2 5.5 52 170-224 174-242 (271)
67 TIGR00308 TRM1 tRNA(guanine-26 66.3 7.9 0.00017 37.6 4.2 28 169-199 113-140 (374)
68 TIGR00406 prmA ribosomal prote 66.3 1.1E+02 0.0023 28.2 11.5 117 95-220 144-272 (288)
69 TIGR00477 tehB tellurite resis 65.5 37 0.0008 29.2 7.8 114 83-206 6-131 (195)
70 PRK08287 cobalt-precorrin-6Y C 65.2 83 0.0018 26.5 11.0 119 92-220 14-144 (187)
71 PRK03612 spermidine synthase; 64.3 26 0.00057 35.3 7.6 94 111-206 297-413 (521)
72 PF13847 Methyltransf_31: Meth 62.2 7.8 0.00017 31.5 2.9 96 111-210 3-112 (152)
73 PRK04338 N(2),N(2)-dimethylgua 61.8 13 0.00028 36.2 4.7 40 169-214 124-163 (382)
74 COG4123 Predicted O-methyltran 61.3 49 0.0011 30.7 8.2 118 111-232 44-197 (248)
75 TIGR02143 trmA_only tRNA (urac 57.7 23 0.00049 33.8 5.6 116 94-219 180-323 (353)
76 COG2961 ComJ Protein involved 57.7 34 0.00075 32.4 6.5 28 171-198 157-184 (279)
77 PRK14896 ksgA 16S ribosomal RN 57.0 35 0.00076 30.8 6.5 89 85-182 5-103 (258)
78 PRK01581 speE spermidine synth 56.8 50 0.0011 32.5 7.8 46 98-145 138-186 (374)
79 PTZ00338 dimethyladenosine tra 56.8 19 0.00041 33.7 4.8 96 82-182 9-113 (294)
80 PF04378 RsmJ: Ribosomal RNA s 56.7 9.3 0.0002 35.4 2.7 81 100-199 71-154 (245)
81 PRK12270 kgd alpha-ketoglutara 56.6 34 0.00073 38.2 7.1 94 94-219 1024-1128(1228)
82 TIGR02469 CbiT precorrin-6Y C5 56.5 65 0.0014 24.2 7.0 88 112-206 20-120 (124)
83 smart00650 rADc Ribosomal RNA 55.8 31 0.00067 28.8 5.5 66 111-182 13-89 (169)
84 PLN02476 O-methyltransferase 55.5 60 0.0013 30.5 7.8 106 88-199 98-220 (278)
85 PF00072 Response_reg: Respons 53.9 28 0.00062 25.6 4.5 58 168-230 41-100 (112)
86 PRK11188 rrmJ 23S rRNA methylt 53.8 1.5E+02 0.0033 25.9 12.4 128 111-240 51-201 (209)
87 PRK04457 spermidine synthase; 52.2 38 0.00083 30.9 5.9 91 111-206 66-175 (262)
88 PF10087 DUF2325: Uncharacteri 51.7 37 0.0008 26.2 5.0 63 147-214 21-88 (97)
89 PRK00377 cbiT cobalt-precorrin 51.5 1.5E+02 0.0033 25.2 13.3 115 111-232 40-173 (198)
90 TIGR02304 aden_form_hyp probab 49.2 60 0.0013 32.1 7.1 89 111-224 142-240 (430)
91 PRK11933 yebU rRNA (cytosine-C 49.0 48 0.001 33.3 6.5 128 88-220 90-258 (470)
92 COG1313 PflX Uncharacterized F 47.2 49 0.0011 32.1 5.9 137 80-232 133-301 (335)
93 PF12847 Methyltransf_18: Meth 47.1 57 0.0012 24.4 5.3 91 112-208 2-111 (112)
94 PRK10258 biotin biosynthesis p 46.5 87 0.0019 27.5 7.1 90 111-208 42-140 (251)
95 PRK10742 putative methyltransf 46.4 13 0.00028 34.7 1.9 65 111-183 110-177 (250)
96 PLN02781 Probable caffeoyl-CoA 46.4 1.2E+02 0.0025 27.2 8.0 87 90-179 50-153 (234)
97 PLN02672 methionine S-methyltr 43.9 75 0.0016 35.4 7.5 104 113-220 120-291 (1082)
98 COG4152 ABC-type uncharacteriz 43.4 44 0.00096 31.9 4.9 48 165-214 143-192 (300)
99 KOG0069 Glyoxylate/hydroxypyru 43.3 1.5E+02 0.0032 28.9 8.6 113 111-229 161-284 (336)
100 PF14972 Mito_morph_reg: Mitoc 43.1 18 0.0004 31.8 2.2 22 163-184 24-45 (165)
101 PF09445 Methyltransf_15: RNA 41.4 13 0.00029 32.3 1.1 15 171-185 70-84 (163)
102 COG2813 RsmC 16S RNA G1207 met 41.1 33 0.00072 32.8 3.8 103 112-221 159-281 (300)
103 PRK00536 speE spermidine synth 40.4 83 0.0018 29.3 6.2 91 98-199 60-163 (262)
104 PRK00854 rocD ornithine--oxo-a 40.3 89 0.0019 29.3 6.6 33 150-182 167-199 (401)
105 KOG2356 Transcriptional activa 40.0 13 0.00028 36.1 0.9 34 151-184 165-198 (366)
106 PLN02366 spermidine synthase 39.0 1.1E+02 0.0023 29.0 6.9 33 111-144 91-126 (308)
107 COG2197 CitB Response regulato 38.4 73 0.0016 28.0 5.4 58 168-232 44-105 (211)
108 PTZ00146 fibrillarin; Provisio 38.3 2.1E+02 0.0045 27.3 8.6 108 95-206 112-235 (293)
109 cd02036 MinD Bacterial cell di 38.0 48 0.001 26.9 3.9 14 133-146 28-41 (179)
110 PRK05939 hypothetical protein; 36.8 1.2E+02 0.0026 29.4 6.9 86 90-179 39-140 (397)
111 PF02384 N6_Mtase: N-6 DNA Met 36.8 17 0.00036 33.2 1.1 94 84-183 22-138 (311)
112 COG0338 Dam Site-specific DNA 35.5 64 0.0014 30.4 4.7 50 169-220 172-238 (274)
113 PF10294 Methyltransf_16: Puta 34.6 47 0.001 28.2 3.4 112 95-212 22-160 (173)
114 COG0144 Sun tRNA and rRNA cyto 33.6 60 0.0013 31.1 4.3 124 90-220 137-304 (355)
115 PRK03244 argD acetylornithine 32.9 2E+02 0.0044 26.9 7.7 49 151-199 164-215 (398)
116 PRK04266 fibrillarin; Provisio 32.9 3.6E+02 0.0079 24.1 11.0 108 95-206 56-174 (226)
117 PRK14103 trans-aconitate 2-met 32.7 1.6E+02 0.0035 26.1 6.6 91 111-207 29-125 (255)
118 TIGR03246 arg_catab_astC succi 32.6 34 0.00074 32.5 2.5 51 150-200 159-212 (397)
119 PRK11207 tellurite resistance 32.3 3.1E+02 0.0067 23.5 8.2 90 111-206 30-132 (197)
120 COG2265 TrmA SAM-dependent met 32.2 91 0.002 31.0 5.4 73 153-230 343-426 (432)
121 PRK01683 trans-aconitate 2-met 32.1 1.3E+02 0.0027 26.6 5.8 118 84-208 3-130 (258)
122 COG4098 comFA Superfamily II D 32.0 1.4E+02 0.003 29.9 6.5 92 113-220 144-252 (441)
123 PRK10046 dpiA two-component re 30.8 1E+02 0.0022 26.5 4.9 59 168-230 48-107 (225)
124 PLN02823 spermine synthase 30.6 1E+02 0.0022 29.6 5.3 49 98-147 91-141 (336)
125 COG2908 Uncharacterized protei 30.5 1.2E+02 0.0027 28.2 5.6 98 45-154 11-118 (237)
126 PF07669 Eco57I: Eco57I restri 29.4 33 0.00071 27.0 1.5 15 170-184 2-16 (106)
127 cd03111 CpaE_like This protein 29.0 2.1E+02 0.0046 22.1 6.0 14 133-146 29-42 (106)
128 PRK12335 tellurite resistance 28.6 2.9E+02 0.0063 25.2 7.8 90 111-206 120-221 (287)
129 TIGR00345 arsA arsenite-activa 28.6 53 0.0011 30.2 2.9 23 169-199 111-133 (284)
130 PLN02589 caffeoyl-CoA O-methyl 28.4 98 0.0021 28.4 4.6 86 90-178 61-164 (247)
131 PF05958 tRNA_U5-meth_tr: tRNA 28.1 88 0.0019 29.9 4.4 43 170-219 278-322 (352)
132 PRK11036 putative S-adenosyl-L 27.2 2.4E+02 0.0052 25.0 6.8 93 111-207 44-148 (255)
133 PRK06234 methionine gamma-lyas 26.6 1E+02 0.0022 29.6 4.6 89 89-179 55-158 (400)
134 cd02038 FleN-like FleN is a me 26.1 3.5E+02 0.0075 21.8 8.0 63 132-198 27-93 (139)
135 TIGR02072 BioC biotin biosynth 25.6 2.5E+02 0.0055 23.6 6.4 108 96-208 19-135 (240)
136 PRK00274 ksgA 16S ribosomal RN 25.3 5.2E+02 0.011 23.5 9.3 93 82-183 15-118 (272)
137 PLN03029 type-a response regul 25.3 90 0.002 27.4 3.7 59 168-230 70-131 (222)
138 cd00614 CGS_like CGS_like: Cys 25.2 88 0.0019 29.4 3.8 85 92-180 37-135 (369)
139 PF02086 MethyltransfD12: D12 25.1 38 0.00083 29.6 1.3 14 169-182 176-189 (260)
140 PRK00107 gidB 16S rRNA methylt 25.0 4.6E+02 0.0099 22.8 9.8 107 111-225 45-165 (187)
141 cd02037 MRP-like MRP (Multiple 24.9 64 0.0014 26.7 2.5 49 132-183 27-81 (169)
142 KOG3201 Uncharacterized conser 24.8 92 0.002 28.1 3.6 43 165-209 98-141 (201)
143 KOG2098 Predicted N6-adenine R 24.8 40 0.00087 34.5 1.5 41 168-213 387-439 (591)
144 cd02042 ParA ParA and ParB of 24.5 98 0.0021 23.2 3.3 13 132-144 27-39 (104)
145 PF01596 Methyltransf_3: O-met 24.5 46 0.001 29.6 1.7 102 93-199 30-148 (205)
146 COG1484 DnaC DNA replication p 24.4 1.1E+02 0.0024 27.9 4.2 18 112-129 133-150 (254)
147 PLN03075 nicotianamine synthas 24.2 5.8E+02 0.013 24.3 9.0 99 111-216 123-241 (296)
148 PLN03142 Probable chromatin-re 23.9 2.1E+02 0.0046 31.9 6.8 103 112-219 219-337 (1033)
149 PRK10840 transcriptional regul 23.8 1.8E+02 0.0039 24.5 5.2 59 169-230 48-109 (216)
150 TIGR01387 cztR_silR_copR heavy 23.7 1.6E+02 0.0034 23.9 4.6 18 203-220 72-89 (218)
151 TIGR01983 UbiG ubiquinone bios 23.0 3E+02 0.0066 23.3 6.5 112 93-208 26-149 (224)
152 TIGR00707 argD acetylornithine 22.9 4.3E+02 0.0093 24.3 7.8 31 151-181 151-181 (379)
153 COG1743 Adenine-specific DNA m 21.8 44 0.00094 36.2 1.1 15 169-183 488-502 (875)
154 PRK10360 DNA-binding transcrip 21.7 2E+02 0.0043 23.1 4.8 56 169-230 46-101 (196)
155 PF12237 PCIF1_WW: Phosphoryla 21.7 2.3E+02 0.0049 25.2 5.4 64 120-197 49-127 (176)
156 cd01125 repA Hexameric Replica 21.2 1.4E+02 0.0031 26.2 4.2 30 169-199 110-147 (239)
157 PRK09483 response regulator; P 21.1 2.2E+02 0.0047 23.3 5.0 9 171-179 48-56 (217)
158 PF13651 EcoRI_methylase: Aden 21.1 81 0.0018 30.8 2.7 27 167-199 132-158 (336)
159 PRK10336 DNA-binding transcrip 21.1 2.1E+02 0.0046 23.2 4.9 13 169-181 43-55 (219)
160 PRK08818 prephenate dehydrogen 20.8 3.5E+02 0.0075 26.4 7.0 100 113-232 5-110 (370)
161 TIGR02875 spore_0_A sporulatio 20.6 2.2E+02 0.0048 24.8 5.2 48 169-220 47-97 (262)
162 PF01888 CbiD: CbiD; InterPro 20.4 1E+02 0.0022 28.9 3.2 49 179-227 176-224 (261)
163 PRK13942 protein-L-isoaspartat 20.2 4.7E+02 0.01 22.7 7.2 88 111-209 76-177 (212)
164 COG4122 Predicted O-methyltran 20.1 1.3E+02 0.0028 27.4 3.7 81 94-177 45-139 (219)
No 1
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.9e-78 Score=525.00 Aligned_cols=206 Identities=49% Similarity=0.866 Sum_probs=191.0
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCcccccccccccChhHHHHHHHHHHhhcCCCCCeEE
Q 025067 37 EEDDDRPMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVA 116 (258)
Q Consensus 37 ~~ddd~~~LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~Ia 116 (258)
.+|||+|+|||+|||||+||++||+++++...++. ..|..++||||||||||+++|++.||.+++..++ +++|||
T Consensus 4 ~e~Dd~~~LsA~aLAaL~eF~aEq~k~~e~~~~~~----~~i~~~~eDwQlsqfwy~~eta~~La~e~v~~s~-e~~rIa 78 (217)
T KOG3350|consen 4 VEDDDDLQLSADALAALNEFLAEQQKRIEEEENQS----DIIEKIGEDWQLSQFWYSDETARKLAAERVEASG-EGSRIA 78 (217)
T ss_pred cccCcccccCHHHHHHHHHHHHHHHhhhhccCchh----hhhhhcccchhhhhhhcCHHHHHHHHHHHHhhcc-cCceEE
Confidence 34788999999999999999999999976543221 4688999999999999999999999999999998 889999
Q ss_pred EEeChhHHHHHHhh---CCCCCceEEeecccccccCCccccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHH
Q 025067 117 CIACPTLYAYLKKI---RPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETV 193 (258)
Q Consensus 117 clstPSly~~lk~~---~~~~~~~LLEyD~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Ti 193 (258)
||||||||...+++ .|..+++|||||+||+.||.+|+|||||.|+++|..|++.||+||+|||||++||+.|+++||
T Consensus 79 cvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~ti 158 (217)
T KOG3350|consen 79 CVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYGTEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETI 158 (217)
T ss_pred EEeCchHHhhhhhhhccCCceeEEEEEehhhHHhccceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHH
Confidence 99999988666554 478899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeecCCCCCCCceeeeeccCCC
Q 025067 194 SFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKLGNEFRLFTNYGPG 248 (258)
Q Consensus 194 r~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~n~L~Nef~cytNye~~ 248 (258)
|.|.++ +.|||+|||++|++++.++|++++|.|+|+|+|||+|+||||+||+++
T Consensus 159 k~L~r~-~~kvilCtGeimee~~s~~l~~~~~sF~PeH~~nLaNeF~cyaNf~~~ 212 (217)
T KOG3350|consen 159 KRLQRN-QKKVILCTGEIMEEWASALLPVLKCSFRPEHERNLANEFRCYANFNLD 212 (217)
T ss_pred HHHhcC-CceEEEechhHhHHHHHHHhhhhhccccchhhcccccceeEEEeccch
Confidence 999998 569999999999999999999999999999999999999999999985
No 2
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=100.00 E-value=1.4e-64 Score=432.78 Aligned_cols=160 Identities=51% Similarity=0.967 Sum_probs=154.4
Q ss_pred cccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHh-hCCCCCceEEeecccccccCC-ccccccCCCCCCc
Q 025067 86 RLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK-IRPEVSPKILEYDMRFEQYGS-DFAFYDYNQPQDL 163 (258)
Q Consensus 86 qlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~-~~~~~~~~LLEyD~RF~~~g~-~FvfYDyn~P~~l 163 (258)
||||||||++|+++|++++.+++. ++++||||||||||++|++ ..++.+++|||||+||++||+ +|+|||||+|+++
T Consensus 1 qlsQfwYs~~T~~~l~~~l~~~~~-~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 1 QLSQFWYSDETAEFLARELLDGAL-DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEEL 79 (162)
T ss_pred CccccccCHHHHHHHHHHHHHhcC-CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhh
Confidence 799999999999999999999887 7899999999999999998 567899999999999999986 4999999999999
Q ss_pred hhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeecCCCCCCCceeeee
Q 025067 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKLGNEFRLFT 243 (258)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~n~L~Nef~cyt 243 (258)
|++++|+||+||+||||+++||++|+|+|+|+|+++ +.|||+|||++|+++|.++||++||+|+|+|+|||+|+|+|||
T Consensus 80 ~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~-~~kii~~Tg~~~~~~~~~ll~~~~~~f~p~h~~~L~n~f~~~~ 158 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKP-GGKIILCTGEEMEELIKKLLGLRMCDFQPEHPNNLSNEFRCYA 158 (162)
T ss_pred hhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCc-cceEEEecHHHHHHHHHHHhCeeEEeEEeccccCCcceeEeEe
Confidence 999999999999999999999999999999999998 7899999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025067 244 NYGP 247 (258)
Q Consensus 244 Nye~ 247 (258)
||++
T Consensus 159 n~~~ 162 (162)
T PF10237_consen 159 NYES 162 (162)
T ss_pred cCCC
Confidence 9985
No 3
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.25 E-value=6e-06 Score=75.69 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=81.6
Q ss_pred ccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEe---ChhHHHHHHhhCCCCCceEEeeccccccc--------C-C
Q 025067 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIA---CPTLYAYLKKIRPEVSPKILEYDMRFEQY--------G-S 150 (258)
Q Consensus 83 EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~Iacls---tPSly~~lk~~~~~~~~~LLEyD~RF~~~--------g-~ 150 (258)
-+-.+-|..=+.+|.-.=|..+.+..+-.+++|+||| .=||-.++.. +..+++++|+|.|.-.| | .
T Consensus 16 ~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~--~~~~I~VvDiDeRll~fI~~~a~~~gl~ 93 (243)
T PF01861_consen 16 PDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTG--LPKRITVVDIDERLLDFINRVAEEEGLP 93 (243)
T ss_dssp --GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred CccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhC--CCCeEEEEEcCHHHHHHHHHHHHHcCCc
Confidence 3455667777777776655555555332578999999 4578877764 45689999999997544 2 1
Q ss_pred -ccccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHH---HH--HHHHHh---C
Q 025067 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQ---KE--RAAELL---G 221 (258)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~m---e~--~i~kll---~ 221 (258)
+-++||+.+| ||+.+.++||++++|||+.-+-.--=+++.+..|..+ ++.+++..+..- .. .+++.+ |
T Consensus 94 i~~~~~DlR~~--LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~-g~~gy~~~~~~~~s~~~~~~~Q~~l~~~g 170 (243)
T PF01861_consen 94 IEAVHYDLRDP--LPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGE-GCAGYFGFTHKEASPDKWLEVQRFLLEMG 170 (243)
T ss_dssp EEEE---TTS-----TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-ST-T-EEEEEE-TTT--HHHHHHHHHHHHTS-
T ss_pred eEEEEeccccc--CCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCC-CceEEEEEecCcCcHHHHHHHHHHHHHCC
Confidence 4789999988 6899999999999999999776555567777777655 445566555321 11 255554 8
Q ss_pred CcccceeecC
Q 025067 222 LRPCGFRPQH 231 (258)
Q Consensus 222 ~~~~~F~P~h 231 (258)
+-.++-.|..
T Consensus 171 l~i~dii~~F 180 (243)
T PF01861_consen 171 LVITDIIPDF 180 (243)
T ss_dssp -EEEEEEEEE
T ss_pred cCHHHHHhhh
Confidence 8888888876
No 4
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=97.77 E-value=3.5e-06 Score=78.16 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=66.8
Q ss_pred cccCcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccccc-CCcccccc
Q 025067 78 VALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY-GSDFAFYD 156 (258)
Q Consensus 78 ~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~-g~~FvfYD 156 (258)
+..++|+...+||.++.+|...|.+.+... .-.-|+||.+|.++.-+++..|...+++++||.||.+| ++ |-.-|
T Consensus 87 L~~i~e~~gE~~F~~T~~~L~~~~d~~~~S---~~~~i~Cv~~~~~~d~~~~~~P~~~iF~~~~e~R~~qFFPS-~Q~~~ 162 (325)
T KOG4399|consen 87 LKFIEEDKGEGIFCQTCPPLGGLDDPGAHS---EHKFIACVIEGQSQDDSHKELPIFWIFPYFFESRICQFFPS-FQMLD 162 (325)
T ss_pred cCccccccCcceEEEecCccCCccchhhhh---hceeEEEEeccccccchhhhCchhheehhhHHHHHHHhCch-Hhhhh
Confidence 457889999999999999999999988776 66899999999999999998999999999999999996 64 44444
Q ss_pred C
Q 025067 157 Y 157 (258)
Q Consensus 157 y 157 (258)
|
T Consensus 163 Y 163 (325)
T KOG4399|consen 163 Y 163 (325)
T ss_pred h
Confidence 4
No 5
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.54 E-value=0.0053 Score=54.62 Aligned_cols=161 Identities=20% Similarity=0.274 Sum_probs=92.0
Q ss_pred CCcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCcccccccccccCh------hHHHHHHHHHHhhcC-CCCCeEE
Q 025067 44 MLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDA------VTAETVAQEAVSLCS-DSDSRVA 116 (258)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlSQFWYsd------~Ta~~La~~l~~~a~-~~~~~Ia 116 (258)
.++.+.++.+++++..+..+..--+ +....+-|.+ .|.-+. ...+.|++.+..... .+..+|+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~p~~~---------i~g~~~f~~~-~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vL 113 (275)
T PRK09328 44 ELTPEELERFRALVARRAAGEPLQY---------ILGEAEFWGL-DFKVSPGVLIPRPETEELVEWALEALLLKEPLRVL 113 (275)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHH---------HceeceEcCc-EEEECCCceeCCCCcHHHHHHHHHhccccCCCEEE
Confidence 5788888889888888754421100 0011121221 122221 112455555553221 1456888
Q ss_pred EEeChhHH--HHHHhhCCCCCceEEeeccccccc---------C-C-ccccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 117 CIACPTLY--AYLKKIRPEVSPKILEYDMRFEQY---------G-S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 117 clstPSly--~~lk~~~~~~~~~LLEyD~RF~~~---------g-~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
=+||=+=. ..+....+..+++..|.+...-.. . . +|+.=|...|.. .++||+||++|||...
T Consensus 114 DiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-----~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 114 DLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-----GGRFDLIVSNPPYIPE 188 (275)
T ss_pred EEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC-----CCceeEEEECCCcCCc
Confidence 88876533 344444566789999998643211 1 1 344445433321 4689999999999864
Q ss_pred HH--------------------------HHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 184 EC--------------------------LEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 184 ec--------------------------~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
.. ..++...+..++++ ++.+++-+|....+.+.+++
T Consensus 189 ~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~-gG~l~~e~g~~~~~~~~~~l 250 (275)
T PRK09328 189 ADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP-GGWLLLEIGYDQGEAVRALL 250 (275)
T ss_pred chhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc-CCEEEEEECchHHHHHHHHH
Confidence 32 33444445566676 56888888877777777776
No 6
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.32 E-value=0.0069 Score=52.80 Aligned_cols=173 Identities=20% Similarity=0.284 Sum_probs=95.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCccccccc------ccccChhHHHHHHHHHHhhcCCCCCeEE
Q 025067 43 PMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLS------QFWYDAVTAETVAQEAVSLCSDSDSRVA 116 (258)
Q Consensus 43 ~~LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlS------QFWYsd~Ta~~La~~l~~~a~~~~~~Ia 116 (258)
..|+...++.|+.++.++..+. .+.. +..-.+-|... -| ........+.+.+++.......+|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~-pl~~--------~~~~~~~~~~~~~~~~~~~-~p~~~~~~l~~~~l~~~~~~~~~il 92 (251)
T TIGR03534 23 KELTPEELARFEALLARRAKGE-PVAY--------ILGEREFYGLDFKVSPGVL-IPRPDTEELVEAALERLKKGPLRVL 92 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCC-CHHH--------HcccceEeceEEEECCCcc-cCCCChHHHHHHHHHhcccCCCeEE
Confidence 5688889999999999876543 1110 00111112111 11 1111223444444444332445888
Q ss_pred EEeChhHHHHHH--hhCCCCCceEEeeccccccc--------C--C-ccccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 117 CIACPTLYAYLK--KIRPEVSPKILEYDMRFEQY--------G--S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 117 clstPSly~~lk--~~~~~~~~~LLEyD~RF~~~--------g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
=+||=+=+..+. +..+..+++.+|.+.+.-.. + . +|+.=|...+. + .++||+||++|||...
T Consensus 93 Dig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~---~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 93 DLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL--P---GGKFDLIVSNPPYIPE 167 (251)
T ss_pred EEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC--c---CCceeEEEECCCCCch
Confidence 888877665433 33566789999998644322 1 1 33444443321 1 3679999999999863
Q ss_pred HHH--------------------------HHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh---CCcccceeecC
Q 025067 184 ECL--------------------------EKVSETVSFLARPGDSKLLLLTGEVQKERAAELL---GLRPCGFRPQH 231 (258)
Q Consensus 184 ec~--------------------------eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll---~~~~~~F~P~h 231 (258)
.-. .++...+..++++ ++++++.+|......+.++| |++...+...+
T Consensus 168 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~-gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 168 ADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP-GGWLLLEIGYDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred hhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc-CCEEEEEECccHHHHHHHHHHhCCCCceEEEeCC
Confidence 211 2333444445565 56788888877666666665 66555544444
No 7
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.13 E-value=0.0022 Score=58.13 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=78.2
Q ss_pred cccChhHHHHHHHHHHhhcCC--CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccc--------cCCccccccC
Q 025067 90 FWYDAVTAETVAQEAVSLCSD--SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ--------YGSDFAFYDY 157 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~--~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~--------~g~~FvfYDy 157 (258)
|+=...| +.|++.++..... ...+|+=++|=|=... +.+..+..+++.+|++..=-. .+.+|+.=|.
T Consensus 64 f~pr~~T-e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~ 142 (251)
T TIGR03704 64 FVPRRRT-EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDL 142 (251)
T ss_pred cCCCccH-HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeec
Confidence 4433444 6677766654321 2346776666554444 444456678999999854321 2224555555
Q ss_pred CCCCCchhhhccCccEEEECCCCCCH--------------------------HHHHHHHHHHHHhcCCCCCcEEEechHH
Q 025067 158 NQPQDLPLELKHAFSVVVVDPPYLSK--------------------------ECLEKVSETVSFLARPGDSKLLLLTGEV 211 (258)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlse--------------------------ec~eK~A~Tir~L~k~~~~kiil~Tg~~ 211 (258)
.++ ++..+.++||+||+||||... +++.++...+..++++ ++++++.+|..
T Consensus 143 ~~~--l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~-gG~l~l~~~~~ 219 (251)
T TIGR03704 143 YDA--LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP-GGHLLVETSER 219 (251)
T ss_pred hhh--cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEECcc
Confidence 432 334445689999999999842 2345666677777777 56899999977
Q ss_pred HHHHHHHHh
Q 025067 212 QKERAAELL 220 (258)
Q Consensus 212 me~~i~kll 220 (258)
+.+-+..+|
T Consensus 220 ~~~~v~~~l 228 (251)
T TIGR03704 220 QAPLAVEAF 228 (251)
T ss_pred hHHHHHHHH
Confidence 766666665
No 8
>PRK14967 putative methyltransferase; Provisional
Probab=96.89 E-value=0.015 Score=51.02 Aligned_cols=117 Identities=20% Similarity=0.259 Sum_probs=70.1
Q ss_pred cccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccccc--------cCC--cccccc
Q 025067 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQ--------YGS--DFAFYD 156 (258)
Q Consensus 88 SQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~--------~g~--~FvfYD 156 (258)
-+||....| ..|++.+......++.+|+-+||-+=...+.-. .+..+++.+|++...-. .+- .++.-|
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d 92 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGD 92 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECc
Confidence 457888877 457777665432256799999998766544321 22247899999975432 121 233334
Q ss_pred CCCCCCchhhhccCccEEEECCCCCCH---------------------HHHHHHHHHHHHhcCCCCCcEEEechHH
Q 025067 157 YNQPQDLPLELKHAFSVVVVDPPYLSK---------------------ECLEKVSETVSFLARPGDSKLLLLTGEV 211 (258)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPFlse---------------------ec~eK~A~Tir~L~k~~~~kiil~Tg~~ 211 (258)
+..+ ++ .++||+||++|||... +.++++...+..++++ ++++++++...
T Consensus 93 ~~~~--~~---~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~-gG~l~~~~~~~ 162 (223)
T PRK14967 93 WARA--VE---FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP-GGSLLLVQSEL 162 (223)
T ss_pred hhhh--cc---CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence 3321 11 3689999999999842 2244444444455565 45788766544
No 9
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.58 E-value=0.078 Score=52.44 Aligned_cols=133 Identities=17% Similarity=0.266 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccc--------cCC--ccccccCCCCCC
Q 025067 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQ--------YGS--DFAFYDYNQPQD 162 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~--------~g~--~FvfYDyn~P~~ 162 (258)
...+.|++.++.... ++.+|+=|||=|=...+ .+..|..+++.+|++..--. .+. .|+.=|+.++.
T Consensus 236 peTE~LVe~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~- 313 (423)
T PRK14966 236 PETEHLVEAVLARLP-ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD- 313 (423)
T ss_pred ccHHHHHHHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc-
Confidence 344666776665544 45689999988765543 44457778999999854321 221 34444443321
Q ss_pred chhhhccCccEEEECCCCCCH-------------------------HHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHH
Q 025067 163 LPLELKHAFSVVVVDPPYLSK-------------------------ECLEKVSETVSFLARPGDSKLLLLTGEVQKERAA 217 (258)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlse-------------------------ec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~ 217 (258)
+| ..++||+||++|||+.. ++..++...+...+++ ++.+++..|....+.+.
T Consensus 314 l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp-gG~lilEiG~~Q~e~V~ 390 (423)
T PRK14966 314 MP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE-GGFLLLEHGFDQGAAVR 390 (423)
T ss_pred cc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC-CcEEEEEECccHHHHHH
Confidence 12 13579999999999642 3555666666666776 45788889988877777
Q ss_pred HHh---CCcccceeecCC
Q 025067 218 ELL---GLRPCGFRPQHS 232 (258)
Q Consensus 218 kll---~~~~~~F~P~h~ 232 (258)
+++ |+........+.
T Consensus 391 ~ll~~~Gf~~v~v~kDl~ 408 (423)
T PRK14966 391 GVLAENGFSGVETLPDLA 408 (423)
T ss_pred HHHHHCCCcEEEEEEcCC
Confidence 776 665555555543
No 10
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.48 E-value=0.077 Score=48.56 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=89.3
Q ss_pred CCcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCcccccccccccChhHHHHHHHHHHhhc-CCC-CCeEEEEeCh
Q 025067 44 MLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLC-SDS-DSRVACIACP 121 (258)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a-~~~-~~~IaclstP 121 (258)
.||.+..+.++++...+.+++---+-.+...+.+..-.... .-|+=..+| +.|++.++... ... ..+|+=|||=
T Consensus 49 ~l~~~~~~~~~~~~~~r~~~~pl~yi~g~~~f~g~~f~v~~---~vliPr~et-e~lv~~~l~~~~~~~~~~~vLDlG~G 124 (284)
T TIGR00536 49 ELTPDEKERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNE---HVLIPRPET-EELVEKALASLISQNPILHILDLGTG 124 (284)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHHhCcceEcCeEEEECC---CCcCCCCcc-HHHHHHHHHHhhhcCCCCEEEEEecc
Confidence 68888888888888877665311110111111111100000 011111223 33444444321 112 2578877776
Q ss_pred hHHH--HHHhhCCCCCceEEeecccccc--------cC--C--ccccccCCCCCCchhhhccCccEEEECCCCCCHH---
Q 025067 122 TLYA--YLKKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE--- 184 (258)
Q Consensus 122 Sly~--~lk~~~~~~~~~LLEyD~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee--- 184 (258)
|=.. .+....+..+++.+|++..--. .+ . +|+.=|.-++ ++ ..+||+||++|||....
T Consensus 125 sG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~---~~~fDlIvsNPPyi~~~~~~ 199 (284)
T TIGR00536 125 SGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LA---GQKIDIIVSNPPYIDEEDLA 199 (284)
T ss_pred HhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--Cc---CCCccEEEECCCCCCcchhh
Confidence 6444 3444456678999998753211 11 1 2443343332 11 12799999999998753
Q ss_pred ----------------------HHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 185 ----------------------CLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 185 ----------------------c~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
+..++...+..++++ ++.+++.+|+.+...+.+++
T Consensus 200 ~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~-gG~l~~e~g~~q~~~~~~~~ 256 (284)
T TIGR00536 200 DLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP-NGFLVCEIGNWQQKSLKELL 256 (284)
T ss_pred cCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC-CCEEEEEECccHHHHHHHHH
Confidence 334455555555665 45788999988888777766
No 11
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.26 E-value=0.024 Score=47.84 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=66.1
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccccCC----------ccccccCCCCCCchhhh
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYGS----------DFAFYDYNQPQDLPLEL 167 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~g~----------~FvfYDyn~P~~lp~~l 167 (258)
..|+..+... +..+|+=+||-+=+..+.-.....+++.+|++..+..... +++.=|.- ..+
T Consensus 9 ~~l~~~l~~~---~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~------~~~ 79 (179)
T TIGR00537 9 LLLEANLREL---KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLF------KGV 79 (179)
T ss_pred HHHHHHHHhc---CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccc------ccc
Confidence 4444544443 4578999999887765543222237999999977643311 12222221 112
Q ss_pred ccCccEEEECCCCCCH---------------------HHHHHHHHHHHHhcCCCCCcEEEechHHH-HHHHHHHh
Q 025067 168 KHAFSVVVVDPPYLSK---------------------ECLEKVSETVSFLARPGDSKLLLLTGEVQ-KERAAELL 220 (258)
Q Consensus 168 k~~fD~Vv~DPPFlse---------------------ec~eK~A~Tir~L~k~~~~kiil~Tg~~m-e~~i~kll 220 (258)
.++||+||++|||... +..+.+...+..++++ ++++++++.... ...+.++|
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~~~~~~~~~~~~~~~~~~l 153 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE-GGRVQLIQSSLNGEPDTFDKL 153 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC-CCEEEEEEeccCChHHHHHHH
Confidence 3589999999999633 2244455555556666 557877766444 44444444
No 12
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.68 E-value=0.019 Score=54.68 Aligned_cols=94 Identities=19% Similarity=0.266 Sum_probs=60.4
Q ss_pred cccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeCh---hHHHHHHhhCCCCCceEEeeccccccc--------C--C
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACP---TLYAYLKKIRPEVSPKILEYDMRFEQY--------G--S 150 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstP---Sly~~lk~~~~~~~~~LLEyD~RF~~~--------g--~ 150 (258)
+.+--|=+-+.+|.-.=+..+-+-.+-.+++|.+||-- |+..+|.. ...++.++|+|.|--.| | .
T Consensus 125 ~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvGDDDLtsia~aLt~--mpk~iaVvDIDERli~fi~k~aee~g~~~ 202 (354)
T COG1568 125 LHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVGDDDLTSIALALTG--MPKRIAVVDIDERLIKFIEKVAEELGYNN 202 (354)
T ss_pred chhcccccccccceeeeeeeeccccCcCCCeEEEEcCchhhHHHHHhcC--CCceEEEEechHHHHHHHHHHHHHhCccc
Confidence 44555666666664332222222212256779999964 44444443 23578888988775333 3 1
Q ss_pred -ccccccCCCCCCchhhhccCccEEEECCCCC
Q 025067 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL 181 (258)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl 181 (258)
+=+-||..+| +|+.++++||+.|.|||.-
T Consensus 203 ie~~~~Dlr~p--lpe~~~~kFDvfiTDPpeT 232 (354)
T COG1568 203 IEAFVFDLRNP--LPEDLKRKFDVFITDPPET 232 (354)
T ss_pred hhheeehhccc--ChHHHHhhCCeeecCchhh
Confidence 4467999998 6999999999999999964
No 13
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.66 E-value=0.11 Score=50.55 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=75.4
Q ss_pred ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeeccc--------ccccC--CccccccCCCC
Q 025067 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMR--------FEQYG--SDFAFYDYNQP 160 (258)
Q Consensus 93 sd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~R--------F~~~g--~~FvfYDyn~P 160 (258)
-|.++..++..+ .. . ++.+|+=+||=+=...+ .+..++..++-+|.+.. +..+| ..++.-|..++
T Consensus 229 Qd~~s~~~~~~l-~~-~-~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~ 305 (427)
T PRK10901 229 QDAAAQLAATLL-AP-Q-NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP 305 (427)
T ss_pred ECHHHHHHHHHc-CC-C-CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 455555555555 32 2 57899999886554443 33334457888898864 33333 14666676543
Q ss_pred CCchhhh-ccCccEEEECCCCCCH----------------------HHHHHHHHHHHHhcCCCCCcEEEec----hHHHH
Q 025067 161 QDLPLEL-KHAFSVVVVDPPYLSK----------------------ECLEKVSETVSFLARPGDSKLLLLT----GEVQK 213 (258)
Q Consensus 161 ~~lp~~l-k~~fD~Vv~DPPFlse----------------------ec~eK~A~Tir~L~k~~~~kiil~T----g~~me 213 (258)
. ..+ .++||+|++|||+.+. +.+.++-.++..++++ |++++.+| ...++
T Consensus 306 ~---~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp-GG~lvystcs~~~~Ene 381 (427)
T PRK10901 306 A---QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP-GGTLLYATCSILPEENE 381 (427)
T ss_pred h---hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCCChhhCH
Confidence 2 222 3579999999998642 2345566666667777 56888766 36777
Q ss_pred HHHHHHh
Q 025067 214 ERAAELL 220 (258)
Q Consensus 214 ~~i~kll 220 (258)
+.+...+
T Consensus 382 ~~v~~~l 388 (427)
T PRK10901 382 QQIKAFL 388 (427)
T ss_pred HHHHHHH
Confidence 7777666
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.56 E-value=0.052 Score=52.75 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=67.2
Q ss_pred cccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCC-CCCceEEeecccccccCC-c----------
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRP-EVSPKILEYDMRFEQYGS-D---------- 151 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~-~~~~~LLEyD~RF~~~g~-~---------- 151 (258)
+-+...|+++....+..+..+. .+.+|+-++|=|=...+..... ..+++.+|.+.+.-.... +
T Consensus 198 ~g~ktG~flDqr~~R~~~~~~~-----~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~ 272 (396)
T PRK15128 198 GGHKTGYYLDQRDSRLATRRYV-----ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSK 272 (396)
T ss_pred cccccCcChhhHHHHHHHHHhc-----CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCc
Confidence 3444558888777666666553 3579999999776666543222 347999999977654321 1
Q ss_pred --cccccCCCCCCchhhh---ccCccEEEECCCCCCHHH---------HHHHHHHHHHhcCCCCCcEEEec
Q 025067 152 --FAFYDYNQPQDLPLEL---KHAFSVVVVDPPYLSKEC---------LEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 152 --FvfYDyn~P~~lp~~l---k~~fD~Vv~DPPFlseec---------~eK~A~Tir~L~k~~~~kiil~T 208 (258)
|+.=|.. ++...+ .++||+||+|||+....- ...+...+..|+++ ++.|++||
T Consensus 273 v~~i~~D~~---~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~-gG~lv~~s 339 (396)
T PRK15128 273 AEFVRDDVF---KLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP-GGILLTFS 339 (396)
T ss_pred EEEEEccHH---HHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence 2222221 111222 247999999999975421 22223334455565 45677643
No 15
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=94.97 E-value=0.19 Score=46.97 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=65.1
Q ss_pred cccChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccC--C-ccccccC
Q 025067 90 FWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYG--S-DFAFYDY 157 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g--~-~FvfYDy 157 (258)
|+....-...|+..++..+. .++.+|+=++|=|=...+.....+.+++-.|+|.+. +.+| + +++.-|.
T Consensus 160 ~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~ 239 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA 239 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch
Confidence 44433333455666555433 145567654443333333222235689999999764 2343 1 3555665
Q ss_pred CCCCCchhhhccCccEEEECCCCCCHH---------HHHHHHHHHHHhcCCCCCcEEEech--HHHHHHHHH
Q 025067 158 NQPQDLPLELKHAFSVVVVDPPYLSKE---------CLEKVSETVSFLARPGDSKLLLLTG--EVQKERAAE 218 (258)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlsee---------c~eK~A~Tir~L~k~~~~kiil~Tg--~~me~~i~k 218 (258)
.+ +|.. .++||+||+||||+... -..++-..+..++++ ++++++.++ ..+++.+.+
T Consensus 240 ~~---l~~~-~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~-gG~lv~~~~~~~~~~~~~~~ 306 (329)
T TIGR01177 240 TK---LPLS-SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS-EGWIVYAVPTRIDLESLAED 306 (329)
T ss_pred hc---CCcc-cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC-CcEEEEEEcCCCCHHHHHhh
Confidence 43 2211 46899999999998532 123444444555565 446554443 344444443
No 16
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.96 E-value=0.37 Score=45.16 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=92.0
Q ss_pred CCCcHHHHHHHHHHHHHHHH-hhHhhhcccccCCcccccCcccccccccccChhHHHHHHHHHHhhcCCCC-CeEEEEeC
Q 025067 43 PMLSSQALAALQEFLSEQNQ-TSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSD-SRVACIAC 120 (258)
Q Consensus 43 ~~LSa~tLaAL~eF~~E~~~-~~~~l~~~~~~~~~~~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~-~~Iaclst 120 (258)
..|+....+.+.+++..|.. ++---+-.++..+.++.-. ..-.=|+=..+|...+...+........ .+|+=+||
T Consensus 66 ~~l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~---v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~ 142 (307)
T PRK11805 66 ARLTPSEKARILELIERRINERIPAAYLTNEAWFCGLEFY---VDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCT 142 (307)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCccHHHHcCcceEcCcEEE---ECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEec
Confidence 36888888888888887753 3211110111111111100 0011133334566666665543322122 57888887
Q ss_pred hhHHHH--HHhhCCCCCceEEeeccccc--------ccC--C--ccccccCCCCCCchhhhccCccEEEECCCCCCHH--
Q 025067 121 PTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE-- 184 (258)
Q Consensus 121 PSly~~--lk~~~~~~~~~LLEyD~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee-- 184 (258)
=|=... +.+..|..+++.+|++..-- ..| + +|+.=|..++ +| .++||+||++|||...+
T Consensus 143 GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~---~~~fDlIvsNPPyi~~~~~ 217 (307)
T PRK11805 143 GSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LP---GRRYDLIVSNPPYVDAEDM 217 (307)
T ss_pred hhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CC---CCCccEEEECCCCCCccch
Confidence 665543 44446777899999984332 122 1 3444444322 22 24799999999998642
Q ss_pred -----------------------HHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 185 -----------------------CLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 185 -----------------------c~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
+..++...+..++++ ++++++-+|...+. +.+++
T Consensus 218 ~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p-gG~l~~E~g~~~~~-~~~~~ 274 (307)
T PRK11805 218 ADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE-DGVLVVEVGNSRVH-LEEAY 274 (307)
T ss_pred hhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC-CCEEEEEECcCHHH-HHHHH
Confidence 334445555555666 56888888876554 66555
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=94.86 E-value=0.27 Score=41.48 Aligned_cols=119 Identities=17% Similarity=0.258 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCCCCCceEEeeccccccc--------CC---ccccccCCCC
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFEQY--------GS---DFAFYDYNQP 160 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF~~~--------g~---~FvfYDyn~P 160 (258)
+.....|++.+... ..++|+=|||=|=...+. +..|..+++..|.+.+--.. +- +++.-|.-++
T Consensus 17 d~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~ 93 (170)
T PF05175_consen 17 DAGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA 93 (170)
T ss_dssp HHHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT
T ss_pred CHHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc
Confidence 34566888888887 568999999887665543 44666679999999664322 21 2344454333
Q ss_pred CCchhhhccCccEEEECCCCCCH-----HHHHHHHHHHHHhcCCCCCcEEEe--chHHHHHHHHHHhC
Q 025067 161 QDLPLELKHAFSVVVVDPPYLSK-----ECLEKVSETVSFLARPGDSKLLLL--TGEVQKERAAELLG 221 (258)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPFlse-----ec~eK~A~Tir~L~k~~~~kiil~--Tg~~me~~i~kll~ 221 (258)
.. .++||+||+.|||..- +.+.++-.-++.++++ +++++++ +..-++..++++++
T Consensus 94 ~~-----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~-~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 94 LP-----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP-GGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp CC-----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE-EEEEEEEEETTSCHHHHHHHHHS
T ss_pred cc-----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccC-CCEEEEEeecCCChHHHHHHhcC
Confidence 21 4789999999999532 3566766666777776 4466443 34456677888874
No 18
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.62 E-value=0.2 Score=50.10 Aligned_cols=114 Identities=16% Similarity=0.263 Sum_probs=71.4
Q ss_pred CeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccC--C--ccccccCCCCCCchhhhccCccEEEECC
Q 025067 113 SRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 113 ~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
.+|+=|||=|=... +.+..|..+++.+|++..- ..++ + .|+.=|+-.+ ++ .++||+||++|
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~---~~~fDlIvsNP 214 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IE---KQKFDFIVSNP 214 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--Cc---CCCccEEEECC
Confidence 57888888775554 3444577789999998432 1122 1 2333333221 11 35799999999
Q ss_pred CCCCHH--------------------------HHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh---CCcccceee
Q 025067 179 PYLSKE--------------------------CLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL---GLRPCGFRP 229 (258)
Q Consensus 179 PFlsee--------------------------c~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll---~~~~~~F~P 229 (258)
||+..+ +..++...+..++++ ++.+++..|....+.+.+++ |++......
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~-gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP-NGKIILEIGFKQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC-CCEEEEEECCchHHHHHHHHHhcCCCceEEEe
Confidence 999632 233344445555666 56889999988888888776 666666655
Q ss_pred cCC
Q 025067 230 QHS 232 (258)
Q Consensus 230 ~h~ 232 (258)
...
T Consensus 294 D~~ 296 (506)
T PRK01544 294 DLQ 296 (506)
T ss_pred cCC
Confidence 544
No 19
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=94.53 E-value=0.86 Score=42.06 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=90.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhHhh-hcccccCCcccccCcccccccccccChhHHHHHHHHHHhhcC-CCCCeEEEEeCh
Q 025067 44 MLSSQALAALQEFLSEQNQTSETA-QNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACP 121 (258)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~l-~~~~~~~~~~~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~-~~~~~IaclstP 121 (258)
.|+.+..+.+.+++..|..+.+-+ +-.++..+.++. =...-.-|+=..+|...+...+..... .+..+|+=+||=
T Consensus 55 ~~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~f~g~~---f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~G 131 (284)
T TIGR03533 55 RLTPSEKERILELIERRIEERIPVAYLTNEAWFAGLE---FYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTG 131 (284)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcHHHHcCCCeecCcE---EEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCc
Confidence 577887777888887775322111 000111111111 000112234344566666665543321 134688878776
Q ss_pred hHHH--HHHhhCCCCCceEEeeccccc--------ccC--C--ccccccCCCCCCchhhhccCccEEEECCCCCCHHH--
Q 025067 122 TLYA--YLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKEC-- 185 (258)
Q Consensus 122 Sly~--~lk~~~~~~~~~LLEyD~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec-- 185 (258)
|=.. .+.+..++.+++.+|++..-- ..| . +|+.-|..++ ++ ..+||+||+||||...+.
T Consensus 132 sG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~---~~~fD~Iv~NPPy~~~~~~~ 206 (284)
T TIGR03533 132 SGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LP---GRKYDLIVSNPPYVDAEDMA 206 (284)
T ss_pred hhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cC---CCCccEEEECCCCCCccchh
Confidence 6443 444546677899999984332 122 1 3555554333 22 247999999999986432
Q ss_pred -----------------------HHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 186 -----------------------LEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 186 -----------------------~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
..++...+..++++ ++++++-+|... +.+.+++
T Consensus 207 ~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~-gG~l~~e~g~~~-~~v~~~~ 262 (284)
T TIGR03533 207 DLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE-NGVLVVEVGNSM-EALEEAY 262 (284)
T ss_pred hCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEECcCH-HHHHHHH
Confidence 23344444555565 568888888755 3566665
No 20
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=93.87 E-value=0.49 Score=45.10 Aligned_cols=114 Identities=11% Similarity=0.234 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHH--HHHhhCCCCCceEEeecc--------cccccC--CccccccCCCCCCchh
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDM--------RFEQYG--SDFAFYDYNQPQDLPL 165 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~--------RF~~~g--~~FvfYDyn~P~~lp~ 165 (258)
+.|.+.+... ..++|+=|||=+=+. .+.+..|..+++++|.+. +++.-+ .+++.-|.-.
T Consensus 186 ~lLl~~l~~~---~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~------ 256 (342)
T PRK09489 186 QLLLSTLTPH---TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS------ 256 (342)
T ss_pred HHHHHhcccc---CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc------
Confidence 4444444332 245787776654443 455556777899999994 333222 1333333321
Q ss_pred hhccCccEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCCcEEEechHHH--HHHHHHHhC
Q 025067 166 ELKHAFSVVVVDPPYLS-----KECLEKVSETVSFLARPGDSKLLLLTGEVQ--KERAAELLG 221 (258)
Q Consensus 166 ~lk~~fD~Vv~DPPFls-----eec~eK~A~Tir~L~k~~~~kiil~Tg~~m--e~~i~kll~ 221 (258)
.+.++||+||++|||-. .++.+.+-..+...+++ ++++++...... ++.+.+.+|
T Consensus 257 ~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp-gG~L~iVan~~l~y~~~l~~~Fg 318 (342)
T PRK09489 257 DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS-GGELRIVANAFLPYPDLLDETFG 318 (342)
T ss_pred ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc-CCEEEEEEeCCCChHHHHHHHcC
Confidence 23578999999999963 44555555555555565 456655444322 566777764
No 21
>PRK14968 putative methyltransferase; Provisional
Probab=93.22 E-value=0.93 Score=37.49 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccccC-------------CccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYG-------------SDFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~g-------------~~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
++.+|+=+||-+=+..+.-...+.+++.+|++....... -.|+.-|..++ ++ ..+||+|+++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~---~~~~d~vi~n 97 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FR---GDKFDVILFN 97 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--cc---ccCceEEEEC
Confidence 567888888886665433211256889999986553221 12344444332 22 2379999999
Q ss_pred CCCCC
Q 025067 178 PPYLS 182 (258)
Q Consensus 178 PPFls 182 (258)
|||..
T Consensus 98 ~p~~~ 102 (188)
T PRK14968 98 PPYLP 102 (188)
T ss_pred CCcCC
Confidence 99976
No 22
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.74 E-value=0.3 Score=50.68 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=67.4
Q ss_pred cccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCC-CCceEEeecccccccCC------------
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPE-VSPKILEYDMRFEQYGS------------ 150 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~-~~~~LLEyD~RF~~~g~------------ 150 (258)
+.|.--|+.+....+.++..+. .+++|+-|+|=|=...+.-...+ .+++-+|++.+--....
T Consensus 516 ~~~~tG~flDqr~~R~~~~~~~-----~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~ 590 (702)
T PRK11783 516 DYLDTGLFLDHRPTRRMIGQMA-----KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQ 590 (702)
T ss_pred CCCcceECHHHHHHHHHHHHhc-----CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 4555556777766555544433 34799999888777776543222 36899999965543211
Q ss_pred -ccccccCCCCCCchhhhccCccEEEECCCCCCHH-----------HHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE-----------CLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee-----------c~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
+|+.=|.. +....+.++||+||+|||+.... -..++...+..++++ ++.+++|+..
T Consensus 591 v~~i~~D~~---~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~-gG~l~~~~~~ 658 (702)
T PRK11783 591 HRLIQADCL---AWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP-GGTLYFSNNK 658 (702)
T ss_pred eEEEEccHH---HHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC-CCEEEEEeCC
Confidence 12222211 11122356899999999997531 112233344445555 4567777663
No 23
>PRK11524 putative methyltransferase; Provisional
Probab=92.08 E-value=0.36 Score=44.35 Aligned_cols=42 Identities=12% Similarity=0.330 Sum_probs=25.4
Q ss_pred ccCccEEEECCCCCCH----------------HHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 168 KHAFSVVVVDPPYLSK----------------ECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 168 k~~fD~Vv~DPPFlse----------------ec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
.+++|+||+||||... +=++.....+..++|+ ++.+++..+.
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~-~G~i~i~~~~ 82 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKK-QGTMYIMNST 82 (284)
T ss_pred cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCC-CcEEEEEcCc
Confidence 3689999999999630 1113344455556666 3456555553
No 24
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=91.34 E-value=1.1 Score=43.90 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=72.4
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hh-CCCCCceEEeecccc--------cccC--C-ccccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDMRF--------EQYG--S-DFAFY 155 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~RF--------~~~g--~-~FvfY 155 (258)
|+.-|..+ .++-.++... ++.+|+=+||=+=...+. .. .++.+++-+|.+..- +..| . +++.-
T Consensus 219 ~~~Qd~~s-~~~~~~l~~~--~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~ 295 (431)
T PRK14903 219 ATVQGESS-QIVPLLMELE--PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIA 295 (431)
T ss_pred EEEECHHH-HHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 44445544 4444444432 567898888877665532 22 234578888887432 2223 1 35555
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEech----
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLLTG---- 209 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec----------------------~eK~A~Tir~L~k~~~~kiil~Tg---- 209 (258)
|... ++..+.++||+|++|||..+... +.++-..+..++++ ++.++.+|-
T Consensus 296 Da~~---l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTCs~~~ 371 (431)
T PRK14903 296 DAER---LTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK-GGILLYSTCTVTK 371 (431)
T ss_pred chhh---hhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCCCh
Confidence 5442 34445678999999999954322 22233333344555 456776554
Q ss_pred HHHHHHHHHHhC
Q 025067 210 EVQKERAAELLG 221 (258)
Q Consensus 210 ~~me~~i~kll~ 221 (258)
+.++..|.+.|.
T Consensus 372 eEne~vv~~fl~ 383 (431)
T PRK14903 372 EENTEVVKRFVY 383 (431)
T ss_pred hhCHHHHHHHHH
Confidence 677888888773
No 25
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=91.25 E-value=1.1 Score=43.76 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=69.4
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeeccc--------ccccC-C--ccccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMR--------FEQYG-S--DFAFY 155 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~R--------F~~~g-~--~FvfY 155 (258)
|..-|..+..++..+ .. . ++.+|+=+||=+=...+ ... .+...++-+|.+.. ...+| . .++.-
T Consensus 234 ~~~qd~~s~l~~~~l-~~-~-~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~ 310 (434)
T PRK14901 234 WTVQDRSAQLVAPLL-DP-Q-PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAA 310 (434)
T ss_pred EEEECHHHHHHHHHh-CC-C-CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 344456555555544 32 1 56788888877655443 222 23347888888742 22233 1 44455
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEec----h
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLLT----G 209 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec----------------------~eK~A~Tir~L~k~~~~kiil~T----g 209 (258)
|............++||+||+|||.-+... +.++-..+-.++|+ +++|+.+| .
T Consensus 311 D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp-gG~lvystcsi~~ 389 (434)
T PRK14901 311 DSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP-GGTLVYATCTLHP 389 (434)
T ss_pred ChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCCCh
Confidence 543321111123468999999999754222 23334444445566 55776443 3
Q ss_pred HHHHHHHHHHh
Q 025067 210 EVQKERAAELL 220 (258)
Q Consensus 210 ~~me~~i~kll 220 (258)
+.++..+...|
T Consensus 390 ~Ene~~v~~~l 400 (434)
T PRK14901 390 AENEAQIEQFL 400 (434)
T ss_pred hhHHHHHHHHH
Confidence 66777777776
No 26
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=91.21 E-value=0.14 Score=50.09 Aligned_cols=42 Identities=40% Similarity=0.724 Sum_probs=26.5
Q ss_pred ccccCC--ccc---cccCCCCCCchhhhccCccEEEECCCCCCHHHHHHH
Q 025067 145 FEQYGS--DFA---FYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKV 189 (258)
Q Consensus 145 F~~~g~--~Fv---fYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~ 189 (258)
|++||. .|. -=|+++|- +-. +-.||.||||||||-+|--+|+
T Consensus 257 FkQYg~~~~fldvl~~D~sn~~-~rs--n~~fDaIvcDPPYGVRe~~rk~ 303 (421)
T KOG2671|consen 257 FKQYGSSSQFLDVLTADFSNPP-LRS--NLKFDAIVCDPPYGVREGARKT 303 (421)
T ss_pred HHHhCCcchhhheeeecccCcc-hhh--cceeeEEEeCCCcchhhhhhhh
Confidence 667762 332 44566552 111 3469999999999988654444
No 27
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=91.06 E-value=0.64 Score=42.26 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=69.6
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hh-CCCCCceEEeecccc--------cccC-C--ccccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDMRF--------EQYG-S--DFAFY 155 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~RF--------~~~g-~--~FvfY 155 (258)
++|-.+-+..++-.++.. . ++.+|+=+||-+=...+. .. .....++-+|.+.+. +..| . +++.-
T Consensus 52 ~~~~qd~~s~~~~~~l~~-~-~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~ 129 (264)
T TIGR00446 52 LYYIQEASSMIPPLALEP-D-PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNF 129 (264)
T ss_pred eEEEECHHHHHHHHHhCC-C-CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC
Confidence 344444555555555544 2 567888888876665532 22 223468888887433 2222 1 23334
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEech----
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLLTG---- 209 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec----------------------~eK~A~Tir~L~k~~~~kiil~Tg---- 209 (258)
|... ++. ..+.||+||+|||.-+... +.++-..+..++++ +++|+.+|-
T Consensus 130 D~~~---~~~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvYstcs~~~ 204 (264)
T TIGR00446 130 DGRV---FGA-AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP-GGVLVYSTCSLEP 204 (264)
T ss_pred CHHH---hhh-hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCCCh
Confidence 4321 221 2346999999999875321 22233333344455 557777654
Q ss_pred HHHHHHHHHHhCC
Q 025067 210 EVQKERAAELLGL 222 (258)
Q Consensus 210 ~~me~~i~kll~~ 222 (258)
..+|..+...|.-
T Consensus 205 ~Ene~vv~~~l~~ 217 (264)
T TIGR00446 205 EENEAVVDYLLEK 217 (264)
T ss_pred HHHHHHHHHHHHh
Confidence 5677788877743
No 28
>PHA03412 putative methyltransferase; Provisional
Probab=90.95 E-value=1.1 Score=41.32 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=62.4
Q ss_pred ccCcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--Hhh---CCCCCceEEeecccccccC----
Q 025067 79 ALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI---RPEVSPKILEYDMRFEQYG---- 149 (258)
Q Consensus 79 ~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~---~~~~~~~LLEyD~RF~~~g---- 149 (258)
..+.+.+.+-||+=-...++.++-. .. .+.+|+=+||=|=-..+ .+. .+..+++.+|+|.+-....
T Consensus 22 ~~~~~~~~~GqFfTP~~iAr~~~i~--~~---~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~ 96 (241)
T PHA03412 22 GAFTNNSELGAFFTPIGLARDFTID--AC---TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV 96 (241)
T ss_pred ccccccccCCccCCCHHHHHHHHHh--cc---CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence 4678999999998877776766421 11 35689888887766554 222 1345899999997755432
Q ss_pred --CccccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 150 --SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 150 --~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
.+++.=|+... .+.++||+||..|||...
T Consensus 97 ~~~~~~~~D~~~~-----~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 97 PEATWINADALTT-----EFDTLFDMAISNPPFGKI 127 (241)
T ss_pred cCCEEEEcchhcc-----cccCCccEEEECCCCCCc
Confidence 13444344321 124689999999999953
No 29
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=90.85 E-value=1.2 Score=43.49 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=52.4
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhh-CCCCCceEEeeccc--------ccccC--C-cccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMR--------FEQYG--S-DFAF 154 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~-~~~~~~~LLEyD~R--------F~~~g--~-~Fvf 154 (258)
.|+-.+.++..++..+ .. . ++.+|+=+||=+=... +.+. .+..+++-+|++.. ++..| . +++.
T Consensus 231 ~~~~qd~~s~lv~~~l-~~-~-~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~ 307 (444)
T PRK14902 231 LITIQDESSMLVAPAL-DP-K-GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKA 307 (444)
T ss_pred eEEEEChHHHHHHHHh-CC-C-CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3555666666666654 32 2 5678887777654443 3332 24568999999743 22333 1 4556
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
-|..+. +..+.++||+|++|||.-+
T Consensus 308 ~D~~~~---~~~~~~~fD~Vl~D~Pcsg 332 (444)
T PRK14902 308 LDARKV---HEKFAEKFDKILVDAPCSG 332 (444)
T ss_pred CCcccc---cchhcccCCEEEEcCCCCC
Confidence 665442 2233478999999999643
No 30
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=90.55 E-value=1.6 Score=42.44 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=73.1
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCCCCCceEEeecccc--------cccCC--cccc
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRF--------EQYGS--DFAF 154 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF--------~~~g~--~Fvf 154 (258)
.-+|+--|..+..++..+.-. ++.+|+=+||=+=...+. +..++.+++-+|.+... +.+|- ...+
T Consensus 217 ~G~~~~Qd~~s~~~~~~L~~~---~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~ 293 (426)
T TIGR00563 217 EGWVTVQDASAQWVATWLAPQ---NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAET 293 (426)
T ss_pred CCeEEEECHHHHHHHHHhCCC---CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 344555667676666665322 567898888876555533 22344578888988643 22331 2222
Q ss_pred ccCCCCCCchhh-hccCccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEe--ch
Q 025067 155 YDYNQPQDLPLE-LKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLL--TG 209 (258)
Q Consensus 155 YDyn~P~~lp~~-lk~~fD~Vv~DPPFlseec----------------------~eK~A~Tir~L~k~~~~kiil~--Tg 209 (258)
.+.... .++.. -.++||+|++|||.-+.-. +.++-..+..++|+ |++++.+ |.
T Consensus 294 ~~~d~~-~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp-gG~lvystcs~ 371 (426)
T TIGR00563 294 KDGDGR-GPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT-GGTLVYATCSV 371 (426)
T ss_pred eccccc-cccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCC
Confidence 333221 11111 1357999999999776322 23344444445666 5577654 43
Q ss_pred --HHHHHHHHHHh
Q 025067 210 --EVQKERAAELL 220 (258)
Q Consensus 210 --~~me~~i~kll 220 (258)
..++..|..+|
T Consensus 372 ~~~Ene~~v~~~l 384 (426)
T TIGR00563 372 LPEENSEQIKAFL 384 (426)
T ss_pred ChhhCHHHHHHHH
Confidence 56788787776
No 31
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=89.11 E-value=0.72 Score=41.08 Aligned_cols=13 Identities=46% Similarity=1.063 Sum_probs=11.7
Q ss_pred CccEEEECCCCCC
Q 025067 170 AFSVVVVDPPYLS 182 (258)
Q Consensus 170 ~fD~Vv~DPPFls 182 (258)
.||+|.+||||..
T Consensus 114 ~FDlVflDPPy~~ 126 (187)
T COG0742 114 PFDLVFLDPPYAK 126 (187)
T ss_pred cccEEEeCCCCcc
Confidence 4999999999993
No 32
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=88.19 E-value=3.5 Score=28.79 Aligned_cols=39 Identities=31% Similarity=0.513 Sum_probs=27.4
Q ss_pred ccCccEEEECCCCCC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 168 KHAFSVVVVDPPYLS-KECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 168 k~~fD~Vv~DPPFls-eec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.+++|+|++++|+.. .+....+-..+..++++ ++.+++.
T Consensus 64 ~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~-~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHLVEDLARFLEEARRLLKP-GGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeehhhHHHHHHHHHHHHcCC-CCEEEEE
Confidence 467999999999987 55566666666666666 4455543
No 33
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=87.93 E-value=0.83 Score=42.36 Aligned_cols=169 Identities=20% Similarity=0.211 Sum_probs=92.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChh
Q 025067 43 PMLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPT 122 (258)
Q Consensus 43 ~~LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPS 122 (258)
..|+.+.+..+.+-...+.++.-.-+--+... +..+.-.=...-|=..++|-..+-..+..... ...+|+=|||=|
T Consensus 46 ~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~---f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~-~~~~ilDlGTGS 121 (280)
T COG2890 46 AELSEEELERLRELLERRAEGEPVAYILGSAE---FGGLRFKVDEGVLIPRPDTELLVEAALALLLQ-LDKRILDLGTGS 121 (280)
T ss_pred cccCHHHHHHHHHHHHHHHCCCCHhHhhccCe---ecceeeeeCCCceecCCchHHHHHHHHHhhhh-cCCcEEEecCCh
Confidence 46778888888777766633321100000011 11222222334556677776555553312211 112687777776
Q ss_pred HHHH--HHhhCCCCCceEEeeccc--------ccccC-CccccccCCCCCCchhhhccCccEEEECCCCCCHH-------
Q 025067 123 LYAY--LKKIRPEVSPKILEYDMR--------FEQYG-SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE------- 184 (258)
Q Consensus 123 ly~~--lk~~~~~~~~~LLEyD~R--------F~~~g-~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee------- 184 (258)
=..+ +.+..|...++-.|+..+ -..+| .++.+..- ++-+.++++||+||+-|||+..+
T Consensus 122 G~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~----dlf~~~~~~fDlIVsNPPYip~~~~~~~~~ 197 (280)
T COG2890 122 GAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQS----DLFEPLRGKFDLIVSNPPYIPAEDPELLPE 197 (280)
T ss_pred HHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEee----ecccccCCceeEEEeCCCCCCCcccccChh
Confidence 5555 455566678999998862 11122 22222211 23344567999999999999886
Q ss_pred ------------------HHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 185 ------------------CLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 185 ------------------c~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
...++..-+...+++ +..+++-.|.-..+.+.+++
T Consensus 198 ~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~-~g~l~le~g~~q~~~v~~~~ 250 (280)
T COG2890 198 VVRYEPLLALVGGGDGLEVYRRILGEAPDILKP-GGVLILEIGLTQGEAVKALF 250 (280)
T ss_pred hhccCHHHHHccCccHHHHHHHHHHhhHHHcCC-CcEEEEEECCCcHHHHHHHH
Confidence 333344444444444 45678888877777777777
No 34
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=87.80 E-value=5.9 Score=33.64 Aligned_cols=118 Identities=13% Similarity=0.043 Sum_probs=63.2
Q ss_pred CCCeEEEEeChhHHHH--HHhh-CCCCCceEEeecccccccCC-ccccccCCCCCCch---hhh-ccCccEEEECC--CC
Q 025067 111 SDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRFEQYGS-DFAFYDYNQPQDLP---LEL-KHAFSVVVVDP--PY 180 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~-~~~~~~~LLEyD~RF~~~g~-~FvfYDyn~P~~lp---~~l-k~~fD~Vv~DP--PF 180 (258)
++.+|+=|||=+-... +.+. .+..+++.+|++.-- ...+ +|+..|..++..++ +.+ .++||+|++|+ ||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~ 110 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI 110 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC
Confidence 5678999988665432 3332 244578999988632 1222 56777877654222 223 35799999994 44
Q ss_pred CCHHH---------HHHHHHHHHHhcCCCCCcEEEe--chHHHHHHHHHHh-CCcccceeec
Q 025067 181 LSKEC---------LEKVSETVSFLARPGDSKLLLL--TGEVQKERAAELL-GLRPCGFRPQ 230 (258)
Q Consensus 181 lseec---------~eK~A~Tir~L~k~~~~kiil~--Tg~~me~~i~kll-~~~~~~F~P~ 230 (258)
.+... ++++-..+..++++ ++++++. .+..+.+++..+- .+.....++.
T Consensus 111 ~g~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~ 171 (188)
T TIGR00438 111 SGYWDIDHLRSIDLVELALDIAKEVLKP-KGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKP 171 (188)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHccC-CCEEEEEEccCccHHHHHHHHHhhhceEEEeCC
Confidence 32211 13334444455566 4566553 3444555555431 3444433333
No 35
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=87.52 E-value=0.3 Score=42.52 Aligned_cols=27 Identities=30% Similarity=0.618 Sum_probs=17.2
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcC
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLAR 198 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k 198 (258)
.+||+|++||||....- +..++..|.+
T Consensus 113 ~~fDiIflDPPY~~~~~---~~~~l~~l~~ 139 (183)
T PF03602_consen 113 EKFDIIFLDPPYAKGLY---YEELLELLAE 139 (183)
T ss_dssp S-EEEEEE--STTSCHH---HHHHHHHHHH
T ss_pred CCceEEEECCCcccchH---HHHHHHHHHH
Confidence 57999999999998753 3455555553
No 36
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=86.17 E-value=0.43 Score=46.24 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=58.9
Q ss_pred cccccccccChhHHHHHHHHHHhhcCC-CCCeEE--EEeChhHHHHHHhhCCCCCceEEeeccc--------ccccC-Cc
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCSD-SDSRVA--CIACPTLYAYLKKIRPEVSPKILEYDMR--------FEQYG-SD 151 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~~-~~~~Ia--clstPSly~~lk~~~~~~~~~LLEyD~R--------F~~~g-~~ 151 (258)
+-..-+|+.....--.||+.+.+++.. .+..|+ |.||=++-...-- -+.+++=-|+|.| ++.|+ ++
T Consensus 169 ~~~kRPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~ 246 (347)
T COG1041 169 DPEKRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIED 246 (347)
T ss_pred CcccCCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCc
Confidence 334447888766666777777777541 345665 6777776543332 2345555566644 33343 35
Q ss_pred cccccCCCCCCchhhhcc-CccEEEECCCCCCH
Q 025067 152 FAFYDYNQPQDLPLELKH-AFSVVVVDPPYLSK 183 (258)
Q Consensus 152 FvfYDyn~P~~lp~~lk~-~fD~Vv~DPPFlse 183 (258)
|.++....-.++| |+. ++|.|++|||||-.
T Consensus 247 ~~~~~~~Da~~lp--l~~~~vdaIatDPPYGrs 277 (347)
T COG1041 247 YPVLKVLDATNLP--LRDNSVDAIATDPPYGRS 277 (347)
T ss_pred eeEEEecccccCC--CCCCccceEEecCCCCcc
Confidence 5566664455566 654 49999999999965
No 37
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=85.99 E-value=0.56 Score=35.97 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=11.1
Q ss_pred ccCccEEEECCCCCCH
Q 025067 168 KHAFSVVVVDPPYLSK 183 (258)
Q Consensus 168 k~~fD~Vv~DPPFlse 183 (258)
.++||+||.||||...
T Consensus 68 ~~~~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPR 83 (117)
T ss_dssp TT-EEEEEE--STTSB
T ss_pred CceeEEEEECCCCccc
Confidence 4789999999999964
No 38
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=85.59 E-value=2.3 Score=41.61 Aligned_cols=122 Identities=11% Similarity=0.048 Sum_probs=69.5
Q ss_pred ccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeecccc--------cccC-C--cccccc
Q 025067 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRF--------EQYG-S--DFAFYD 156 (258)
Q Consensus 91 WYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~RF--------~~~g-~--~FvfYD 156 (258)
+--+.+.. ++-.++... ++.+|+=+||=+=+..+ .+. ....+++-+|.+..- +..| . +++.-|
T Consensus 233 ~vqd~~s~-l~~~~l~~~--~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~D 309 (445)
T PRK14904 233 SVQNPTQA-LACLLLNPQ--PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGD 309 (445)
T ss_pred EEeCHHHH-HHHHhcCCC--CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 33344444 443444431 56799999997766543 222 223478888888532 2233 1 455555
Q ss_pred CCCCCCchhhhccCccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEec----hH
Q 025067 157 YNQPQDLPLELKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLLT----GE 210 (258)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPFlseec----------------------~eK~A~Tir~L~k~~~~kiil~T----g~ 210 (258)
.... + -..+||+|++|||..+.-. +.++-..+..++++ +++++.+| ..
T Consensus 310 a~~~---~--~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvystcs~~~~ 383 (445)
T PRK14904 310 ARSF---S--PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP-GGVLVYATCSIEPE 383 (445)
T ss_pred cccc---c--cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCChh
Confidence 5432 1 1257999999999854211 22333444445565 56888776 35
Q ss_pred HHHHHHHHHhC
Q 025067 211 VQKERAAELLG 221 (258)
Q Consensus 211 ~me~~i~kll~ 221 (258)
.++..+.+.|.
T Consensus 384 Ene~~v~~~l~ 394 (445)
T PRK14904 384 ENELQIEAFLQ 394 (445)
T ss_pred hHHHHHHHHHH
Confidence 67777888774
No 39
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=85.12 E-value=1.2 Score=39.32 Aligned_cols=80 Identities=24% Similarity=0.239 Sum_probs=38.8
Q ss_pred CCeEEEEeChhHHHHHHhh-CCCCCceEEeeccccccc--------C-C--ccccccCCCCCCchhhhccCccEEEECCC
Q 025067 112 DSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY--------G-S--DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 112 ~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~~--------g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
+.+|+=++|-|=...+.-. ....+++.+|.|.+.... + . .|+.=|..+ .++ .....||+||+|||
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~--~l~-~~~~~fDlV~~DPP 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALS--FLA-QPGTPHNVVFVDPP 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHH--HHh-hcCCCceEEEECCC
Confidence 4566666666544444211 112467777777665321 1 0 122112111 011 12346999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q 025067 180 YLSKECLEKVSETVSFLAR 198 (258)
Q Consensus 180 Flseec~eK~A~Tir~L~k 198 (258)
|... +.++ +++.|.+
T Consensus 131 y~~g-~~~~---~l~~l~~ 145 (199)
T PRK10909 131 FRKG-LLEE---TINLLED 145 (199)
T ss_pred CCCC-hHHH---HHHHHHH
Confidence 8653 3333 3444443
No 40
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=85.08 E-value=0.64 Score=40.07 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=12.1
Q ss_pred ccCccEEEECCCCCCH
Q 025067 168 KHAFSVVVVDPPYLSK 183 (258)
Q Consensus 168 k~~fD~Vv~DPPFlse 183 (258)
.+++|+||+||||+-+
T Consensus 104 ~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRR 119 (179)
T ss_dssp TSBSCEEEEE--STTS
T ss_pred cCCCCEEEECcchhhh
Confidence 4689999999999965
No 41
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.75 E-value=4 Score=36.85 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=64.3
Q ss_pred ccCcc-cccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCC-CCCceEEeecccccc--------c
Q 025067 79 ALVSE-DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRP-EVSPKILEYDMRFEQ--------Y 148 (258)
Q Consensus 79 ~~~~E-DwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~-~~~~~LLEyD~RF~~--------~ 148 (258)
..|.+ +-.|.||=-..+.+..|+-.+......++..|+=+||=|=--+|-...- -..++-+|.|..=-. +
T Consensus 12 ~~f~~p~~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l 91 (198)
T COG2263 12 KGFPNPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL 91 (198)
T ss_pred cCCCCCCccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh
Confidence 44444 4579999999998888888886544435667887877765444443212 247889999954321 2
Q ss_pred CC--ccccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 149 GS--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 149 g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
++ +|+-=|- .++.+.+|.||++|||++.
T Consensus 92 ~g~v~f~~~dv-------~~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 92 LGDVEFVVADV-------SDFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCceEEEEcch-------hhcCCccceEEECCCCccc
Confidence 22 3443333 3456889999999999986
No 42
>PRK13699 putative methylase; Provisional
Probab=84.67 E-value=2.8 Score=37.64 Aligned_cols=14 Identities=43% Similarity=0.985 Sum_probs=12.5
Q ss_pred ccCccEEEECCCCC
Q 025067 168 KHAFSVVVVDPPYL 181 (258)
Q Consensus 168 k~~fD~Vv~DPPFl 181 (258)
..++|+||+||||.
T Consensus 18 d~SVDLIiTDPPY~ 31 (227)
T PRK13699 18 DNAVDFILTDPPYL 31 (227)
T ss_pred ccccceEEeCCCcc
Confidence 37899999999996
No 43
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=83.57 E-value=3 Score=39.96 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc--------cC-C--ccccccCCCCCC
Q 025067 95 VTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG-S--DFAFYDYNQPQD 162 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~--------~g-~--~FvfYDyn~P~~ 162 (258)
..++.|.+.+.+... .++.+|+=+.|=+=-..+.-.....+++..|.|..--. .+ + +|+.=|..+
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~--- 292 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAK--- 292 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH---
Confidence 445556666555431 13467776666654444332223457889998854332 12 1 233333221
Q ss_pred chhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcE--EEechHHHHHHHHHH
Q 025067 163 LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKL--LLLTGEVQKERAAEL 219 (258)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~ki--il~Tg~~me~~i~kl 219 (258)
+...+.++||+||+|||+-+- ..++..++..+ ++ .+| +.|-..-+..=+..+
T Consensus 293 ~~~~~~~~~D~vi~DPPr~G~--~~~~l~~l~~~-~p--~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 293 FATAQMSAPELVLVNPPRRGI--GKELCDYLSQM-AP--KFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred HHHhcCCCCCEEEECCCCCCC--cHHHHHHHHhc-CC--CeEEEEEeCHHHHHHHHHHh
Confidence 111123569999999999753 34554444433 22 144 446555555444444
No 44
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=82.78 E-value=2.8 Score=40.93 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc--------cC--C-ccccccCCCCC
Q 025067 94 AVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG--S-DFAFYDYNQPQ 161 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~--------~g--~-~FvfYDyn~P~ 161 (258)
....+.|++.+++... .++.+|+=++|=+=...+.-.....+++-+|++..--. .| . +|+.-|..+.
T Consensus 279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~- 357 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED- 357 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh-
Confidence 3345677777777653 24567876766554444321111247888898854321 12 1 3555554332
Q ss_pred Cchh-hh-ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcE--EEechHHHHHHHHHHh-------CCcccceeec
Q 025067 162 DLPL-EL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKL--LLLTGEVQKERAAELL-------GLRPCGFRPQ 230 (258)
Q Consensus 162 ~lp~-~l-k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~ki--il~Tg~~me~~i~kll-------~~~~~~F~P~ 230 (258)
++. .+ .++||+||+|||+.+. .+ ....+..+..+ +| +.|...-+..-+..+. .+.+.|+.|.
T Consensus 358 -l~~~~~~~~~fD~Vi~dPPr~g~--~~-~~~~l~~~~~~---~ivyvSCnp~tlaRDl~~L~~~gY~l~~i~~~DmFP~ 430 (443)
T PRK13168 358 -FTDQPWALGGFDKVLLDPPRAGA--AE-VMQALAKLGPK---RIVYVSCNPATLARDAGVLVEAGYRLKRAGMLDMFPH 430 (443)
T ss_pred -hhhhhhhcCCCCEEEECcCCcCh--HH-HHHHHHhcCCC---eEEEEEeChHHhhccHHHHhhCCcEEEEEEEeccCCC
Confidence 111 12 3579999999999874 22 32333333222 44 5566655554444442 3445555554
No 45
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=82.74 E-value=7.7 Score=33.48 Aligned_cols=108 Identities=13% Similarity=0.027 Sum_probs=63.5
Q ss_pred cccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccc--------cccC--C-cc
Q 025067 86 RLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRF--------EQYG--S-DF 152 (258)
Q Consensus 86 qlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF--------~~~g--~-~F 152 (258)
+..|+|-+......+...+.-. ++.+|+=|||-+=|... .+.. .+++.+|++... +.+| . ++
T Consensus 56 ~~~~~~~~p~~~~~l~~~l~~~---~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~ 130 (212)
T PRK00312 56 GCGQTISQPYMVARMTELLELK---PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSV 130 (212)
T ss_pred CCCCeeCcHHHHHHHHHhcCCC---CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEE
Confidence 3346777777776666544222 56899999998876543 2322 368888887443 2222 1 34
Q ss_pred ccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+.-|..++ ++. .++||+|+++.++-.- ...+.-++++ ++++++..+
T Consensus 131 ~~~d~~~~--~~~--~~~fD~I~~~~~~~~~------~~~l~~~L~~-gG~lv~~~~ 176 (212)
T PRK00312 131 RHGDGWKG--WPA--YAPFDRILVTAAAPEI------PRALLEQLKE-GGILVAPVG 176 (212)
T ss_pred EECCcccC--CCc--CCCcCEEEEccCchhh------hHHHHHhcCC-CcEEEEEEc
Confidence 44444322 221 2679999999876432 2233344555 467877766
No 46
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=82.73 E-value=0.74 Score=43.25 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=46.4
Q ss_pred cccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeC----hhHHHHHHhhCCCCCceEEeecccccccC----------
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIAC----PTLYAYLKKIRPEVSPKILEYDMRFEQYG---------- 149 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~Iaclst----PSly~~lk~~~~~~~~~LLEyD~RF~~~g---------- 149 (258)
+-|..-|+.+..-.+..+.... .+++|+-+-| -|||...- .-.+++-+|...+.-..+
T Consensus 101 ~gqktGlFlDqR~nR~~v~~~~-----~gkrvLnlFsYTGgfsv~Aa~g---GA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 101 DGQKTGLFLDQRENRKWVRKYA-----KGKRVLNLFSYTGGFSVAAAAG---GAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp SSSSTSS-GGGHHHHHHHHHHC-----TTCEEEEET-TTTHHHHHHHHT---TESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred CCCcceEcHHHHhhHHHHHHHc-----CCCceEEecCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4566779999888887776653 3579988654 55554322 223678888877654321
Q ss_pred -C--ccccccCCCCCCchhhh--ccCccEEEECCCCC
Q 025067 150 -S--DFAFYDYNQPQDLPLEL--KHAFSVVVVDPPYL 181 (258)
Q Consensus 150 -~--~FvfYDyn~P~~lp~~l--k~~fD~Vv~DPPFl 181 (258)
+ +|+..|-- +....+ .++||+||+|||=.
T Consensus 173 ~~~~~~~~~Dvf---~~l~~~~~~~~fD~IIlDPPsF 206 (286)
T PF10672_consen 173 LDRHRFIQGDVF---KFLKRLKKGGRFDLIILDPPSF 206 (286)
T ss_dssp CTCEEEEES-HH---HHHHHHHHTT-EEEEEE--SSE
T ss_pred ccceEEEecCHH---HHHHHHhcCCCCCEEEECCCCC
Confidence 1 23322210 111122 36899999999954
No 47
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=82.53 E-value=2.8 Score=40.09 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=26.0
Q ss_pred CccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcE--EEechHHHHHHHHHH
Q 025067 170 AFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKL--LLLTGEVQKERAAEL 219 (258)
Q Consensus 170 ~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~ki--il~Tg~~me~~i~kl 219 (258)
+||+||+|||..+- .+ .+++.|.++. +| |.|-...+..-+..+
T Consensus 288 ~~D~v~lDPPR~G~--~~---~~l~~l~~~~--~ivyvSC~p~tlarDl~~L 332 (362)
T PRK05031 288 NFSTIFVDPPRAGL--DD---ETLKLVQAYE--RILYISCNPETLCENLETL 332 (362)
T ss_pred CCCEEEECCCCCCC--cH---HHHHHHHccC--CEEEEEeCHHHHHHHHHHH
Confidence 58999999998653 33 3455565542 43 456665554444444
No 48
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=81.56 E-value=17 Score=32.50 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccccccC-CccccccCCCCCCchhhhccCccE
Q 025067 96 TAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQYG-SDFAFYDYNQPQDLPLELKHAFSV 173 (258)
Q Consensus 96 Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~~g-~~FvfYDyn~P~~lp~~lk~~fD~ 173 (258)
|.....+.+..... ++.+|+=|||=|=+-.+.-. ....+++-+|+|...-... .++...+......++.. ..+||+
T Consensus 105 tt~~~l~~l~~~~~-~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-~~~fD~ 182 (250)
T PRK00517 105 TTRLCLEALEKLVL-PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-DLKADV 182 (250)
T ss_pred HHHHHHHHHHhhcC-CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-CCCcCE
Confidence 55556666665544 67899999997655444321 2223599999996654321 12221111111111110 116999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech-HHHHHHHHHHh
Q 025067 174 VVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG-EVQKERAAELL 220 (258)
Q Consensus 174 Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg-~~me~~i~kll 220 (258)
|++.. ..+.+..+...+..++++ ++.++++.. ....+.+.+.+
T Consensus 183 Vvani---~~~~~~~l~~~~~~~Lkp-gG~lilsgi~~~~~~~v~~~l 226 (250)
T PRK00517 183 IVANI---LANPLLELAPDLARLLKP-GGRLILSGILEEQADEVLEAY 226 (250)
T ss_pred EEEcC---cHHHHHHHHHHHHHhcCC-CcEEEEEECcHhhHHHHHHHH
Confidence 99974 345566676667777777 456666532 33333444443
No 49
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=80.50 E-value=4.9 Score=41.86 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=43.5
Q ss_pred cCccEEEECCCCCCHH-----HH---HHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeecCCCCCCCcee
Q 025067 169 HAFSVVVVDPPYLSKE-----CL---EKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKLGNEFR 240 (258)
Q Consensus 169 ~~fD~Vv~DPPFlsee-----c~---eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~n~L~Nef~ 240 (258)
+++|+||++|||+.+- .- ..+...++... .+.++.+.||.. -+.+.++++...-.+-+..+|.-++.
T Consensus 302 ~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~--~g~~~~llt~~~---~l~~~~~l~~~~~~~l~nG~l~~~l~ 376 (702)
T PRK11783 302 GPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQF--GGWNAALFSSSP---ELLSCLGLRADKQYKLKNGALECVLK 376 (702)
T ss_pred CCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhC--CCCeEEEEeCCH---HHHHHhCCCCCCCeeeecCceEEEEE
Confidence 5699999999997541 11 11222233222 245788888843 35567788776555555445666666
Q ss_pred eeeccC
Q 025067 241 LFTNYG 246 (258)
Q Consensus 241 cytNye 246 (258)
-|.-|+
T Consensus 377 ~~~~~~ 382 (702)
T PRK11783 377 NYTIAE 382 (702)
T ss_pred EEEccc
Confidence 665553
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=80.41 E-value=15 Score=31.62 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccc--------cccC--C-ccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRF--------EQYG--S-DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF--------~~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
.+.+|+=|||=+=+..+ ....+..+++.+|.+..- +..| . +|+.-|..+ ++ ..++||+|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~---~~--~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED---FQ--HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh---cc--ccCCccEEEeh
Confidence 35688888876554333 233466789999999641 1122 1 344445433 21 24689999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh-CCcccceee
Q 025067 178 PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL-GLRPCGFRP 229 (258)
Q Consensus 178 PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll-~~~~~~F~P 229 (258)
. +... ..+-+.+..++++ ++++++..|..-..-+..+. .+..+.|+|
T Consensus 117 ~-~~~~---~~~~~~~~~~Lkp-gG~lvi~~~~~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 117 A-LASL---NVLLELTLNLLKV-GGYFLAYKGKKYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred h-hhCH---HHHHHHHHHhcCC-CCEEEEEcCCCcHHHHHHHHHhhhhcCceE
Confidence 7 4332 3344555666676 56788888855555444443 333344443
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=79.96 E-value=4.4 Score=39.50 Aligned_cols=123 Identities=9% Similarity=0.152 Sum_probs=65.0
Q ss_pred cChhHHHHHHHHHHhhcCC-CCCeEEEEeChh--HHHHHHhhCCCCCceEEeecccccc--------cC-C-----cccc
Q 025067 92 YDAVTAETVAQEAVSLCSD-SDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQ--------YG-S-----DFAF 154 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~-~~~~IaclstPS--ly~~lk~~~~~~~~~LLEyD~RF~~--------~g-~-----~Fvf 154 (258)
||.+....=.+.+++.... ..++|+=|||=+ |-..+.+..|..+++.+|.+.+--. .+ + +|+.
T Consensus 208 Fs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 208 FSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred cCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 4444444444444444331 235787776655 3344455578889999999954221 11 0 2222
Q ss_pred ccCCCCCCchhhh-ccCccEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCCcEEEechH--HHHHHHHHHhC
Q 025067 155 YDYNQPQDLPLEL-KHAFSVVVVDPPYLS-----KECLEKVSETVSFLARPGDSKLLLLTGE--VQKERAAELLG 221 (258)
Q Consensus 155 YDyn~P~~lp~~l-k~~fD~Vv~DPPFls-----eec~eK~A~Tir~L~k~~~~kiil~Tg~--~me~~i~kll~ 221 (258)
=|.- ..+ .++||+||+.|||-. .+-..++-..++..+++ ++++++.... .-...+.+++|
T Consensus 288 ~D~l------~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp-GG~L~iV~nr~l~y~~~L~~~fg 355 (378)
T PRK15001 288 NNAL------SGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIVANRHLDYFHKLKKIFG 355 (378)
T ss_pred cccc------ccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc-CCEEEEEEecCcCHHHHHHHHcC
Confidence 2221 112 247999999999953 23234444445555666 4566666421 12244556664
No 52
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.92 E-value=5.1 Score=39.42 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=40.8
Q ss_pred cCccEEEECCCCCCH----HHHH----HHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeecCCCCC
Q 025067 169 HAFSVVVVDPPYLSK----ECLE----KVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKL 235 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse----ec~e----K~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~n~L 235 (258)
..+|+||++|||+-+ +-++ .+..++|.+.+.+ ++.|++|-+ .....++++...+++-|...|
T Consensus 298 ~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w-s~~v~tt~e----~~~~~~~~ra~~~~~~~ng~l 367 (381)
T COG0116 298 EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW-SRYVFTTSE----DLLFCLGLRADKKRKLYNGPL 367 (381)
T ss_pred CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC-ceEEEEccH----HHHHHHhhhhccceeecccce
Confidence 579999999999843 2223 3455666556553 356777743 344556888888888886544
No 53
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=77.36 E-value=6.2 Score=38.87 Aligned_cols=13 Identities=31% Similarity=0.973 Sum_probs=11.4
Q ss_pred CccEEEECCCCCC
Q 025067 170 AFSVVVVDPPYLS 182 (258)
Q Consensus 170 ~fD~Vv~DPPFls 182 (258)
+||+||+|||=.+
T Consensus 290 ~fDlIilDPPsF~ 302 (393)
T COG1092 290 KFDLIILDPPSFA 302 (393)
T ss_pred cccEEEECCcccc
Confidence 7999999999654
No 54
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=75.66 E-value=1.4 Score=37.07 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=8.1
Q ss_pred ccEEEECCCCCCH
Q 025067 171 FSVVVVDPPYLSK 183 (258)
Q Consensus 171 fD~Vv~DPPFlse 183 (258)
+|+||+||||...
T Consensus 1 VdliitDPPY~~~ 13 (231)
T PF01555_consen 1 VDLIITDPPYNIG 13 (231)
T ss_dssp EEEEEE---TSSS
T ss_pred CCEEEECCCCCCC
Confidence 4899999999863
No 55
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=73.72 E-value=6.9 Score=37.85 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccccc--------C--C-ccccccCCCC
Q 025067 93 DAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY--------G--S-DFAFYDYNQP 160 (258)
Q Consensus 93 sd~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~--------g--~-~FvfYDyn~P 160 (258)
.....+.|.+.+.+.+. .++.+|+=++|=+=...+.-.....+++-+|.+...-.. | . +|+.-|..+
T Consensus 273 N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~- 351 (431)
T TIGR00479 273 NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET- 351 (431)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHH-
Confidence 45556667777766543 134677766554444433211112478888988543211 1 1 355555432
Q ss_pred CCchhh-h-ccCccEEEECCCCCC
Q 025067 161 QDLPLE-L-KHAFSVVVVDPPYLS 182 (258)
Q Consensus 161 ~~lp~~-l-k~~fD~Vv~DPPFls 182 (258)
.++.. + .++||+||+|||..+
T Consensus 352 -~l~~~~~~~~~~D~vi~dPPr~G 374 (431)
T TIGR00479 352 -VLPKQPWAGQIPDVLLLDPPRKG 374 (431)
T ss_pred -HHHHHHhcCCCCCEEEECcCCCC
Confidence 12221 2 246999999999876
No 56
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=73.56 E-value=4.1 Score=35.39 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=12.0
Q ss_pred CccEEEECCCCCCH
Q 025067 170 AFSVVVVDPPYLSK 183 (258)
Q Consensus 170 ~fD~Vv~DPPFlse 183 (258)
.+|+|++||||...
T Consensus 121 ~~dvv~~DPPy~~~ 134 (189)
T TIGR00095 121 FDNVIYLDPPFFNG 134 (189)
T ss_pred CceEEEECcCCCCC
Confidence 38999999999864
No 57
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=73.26 E-value=7.9 Score=35.37 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=36.2
Q ss_pred CccEEEECCCCC----------------CHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh-CCcccce
Q 025067 170 AFSVVVVDPPYL----------------SKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL-GLRPCGF 227 (258)
Q Consensus 170 ~fD~Vv~DPPFl----------------seec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll-~~~~~~F 227 (258)
.-|+|-+||||. +++=...+++.++-|... +.+++++.- ..+.|.++| +..+..+
T Consensus 172 ~~dfvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~L~~~l~~l~~~-~~~~~lS~~--~~~~i~ely~~~~~~~~ 243 (266)
T TIGR00571 172 DDSFVYCDPPYLPLSATYNFTGYHTNGFDEDEQKRLANFCKSLDER-GIKFLLSNS--DSSFTRELYQGFNVKVV 243 (266)
T ss_pred CCCEEEECCCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeC--CCHHHHHHhcCCeEEEE
Confidence 456999999994 233345788888887543 457777663 556788888 5544333
No 58
>PRK00811 spermidine synthase; Provisional
Probab=72.59 E-value=14 Score=33.99 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=24.4
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccc
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ 147 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~ 147 (258)
+..+|+.||+=+-... +.+..+..++.+.|+|...-.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~ 114 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVE 114 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHH
Confidence 5679999998754332 223223358999999976543
No 59
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=70.68 E-value=2.3 Score=36.38 Aligned_cols=54 Identities=33% Similarity=0.457 Sum_probs=31.2
Q ss_pred ccEEEECCCCCCHHHH---------------HHHHHHHHHhcCCCCCc-EEEechHHHHHHHHHHh---CCccc
Q 025067 171 FSVVVVDPPYLSKECL---------------EKVSETVSFLARPGDSK-LLLLTGEVQKERAAELL---GLRPC 225 (258)
Q Consensus 171 fD~Vv~DPPFlseec~---------------eK~A~Tir~L~k~~~~k-iil~Tg~~me~~i~kll---~~~~~ 225 (258)
||+|++|||.-+..-- +-.+.=|..|+.+ ++- .|++|...+..-..++| |++.+
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~~l~~~-~~~lflWvTn~~~~~~~~~l~~~WGf~~~ 73 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPTMSLDEIKSLPVPQLAAP-GALLFLWVTNSQLPEAKLELFPAWGFEYV 73 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCccCHHHHHhCCHHHhCCC-CcEEEEEeccchhhHHHHHHHHhCCCEEE
Confidence 7999999999876411 1112224445554 332 48899866554325665 65544
No 60
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=70.33 E-value=14 Score=33.58 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=37.7
Q ss_pred CCCeEEEEeChhHH--HHHHhhCCCCCceEEeecccccccCCc-ccccc--CCCCC------C---chhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYGSD-FAFYD--YNQPQ------D---LPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly--~~lk~~~~~~~~~LLEyD~RF~~~g~~-FvfYD--yn~P~------~---lp~~lk~~fD~Vv~ 176 (258)
+..+|+.||+-+-. ..+.+..+..++.+.|+|..--....+ |-.+. +..|. + +-....++||+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999987533 222222234589999999654322111 11111 11111 1 11112468999999
Q ss_pred CCCCC
Q 025067 177 DPPYL 181 (258)
Q Consensus 177 DPPFl 181 (258)
|+|..
T Consensus 152 D~~~~ 156 (270)
T TIGR00417 152 DSTDP 156 (270)
T ss_pred eCCCC
Confidence 99854
No 61
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=68.67 E-value=11 Score=33.35 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=57.9
Q ss_pred cccccccccChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCC-CCceEEeeccc-----------ccccCC
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPE-VSPKILEYDMR-----------FEQYGS 150 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~-~~~~LLEyD~R-----------F~~~g~ 150 (258)
.--|.||=-+..-+...+..|.+-.+ .++++|+=|+|=.=--.+.-..++ ..++=||+|.- |++- .
T Consensus 20 k~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-i 98 (185)
T KOG3420|consen 20 KLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-I 98 (185)
T ss_pred chhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-h
Confidence 34588999999988888888876654 256666655554322222221222 35666777731 2211 1
Q ss_pred ccccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
+++.=|+-.++- -.+.||.+|+||||++.
T Consensus 99 dlLqcdildle~----~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 99 DLLQCDILDLEL----KGGIFDTAVINPPFGTK 127 (185)
T ss_pred heeeeeccchhc----cCCeEeeEEecCCCCcc
Confidence 456666654431 13779999999999986
No 62
>PHA03411 putative methyltransferase; Provisional
Probab=68.56 E-value=5.3 Score=37.70 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=51.9
Q ss_pred cCccc--ccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChh--HHHHHHhhCCCCCceEEeecccccccC-----C
Q 025067 80 LVSED--WRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQYG-----S 150 (258)
Q Consensus 80 ~~~ED--wqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPS--ly~~lk~~~~~~~~~LLEyD~RF~~~g-----~ 150 (258)
.+.+| ...-||+=-+..+..++ ... . ..++|+=++|=+ +-..+.+..+..+++.+|++.+..... .
T Consensus 36 ~~~g~~~~~~G~FfTP~~i~~~f~---~~~-~-~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~ 110 (279)
T PHA03411 36 NYHGDGLGGSGAFFTPEGLAWDFT---IDA-H-CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPE 110 (279)
T ss_pred hcccccccCceeEcCCHHHHHHHH---hcc-c-cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcC
Confidence 44444 22368876666654442 222 1 345777665533 222233333456899999998876542 1
Q ss_pred -ccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
+++.=|+... + ...+||+||++|||+.
T Consensus 111 v~~v~~D~~e~---~--~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 111 AEWITSDVFEF---E--SNEKFDVVISNPPFGK 138 (279)
T ss_pred CEEEECchhhh---c--ccCCCcEEEEcCCccc
Confidence 2222233221 1 1357999999999986
No 63
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=67.91 E-value=32 Score=29.88 Aligned_cols=108 Identities=14% Similarity=0.019 Sum_probs=63.6
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhC-CCCCceEEeeccc--------ccccC--C-cccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIR-PEVSPKILEYDMR--------FEQYG--S-DFAF 154 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~-~~~~~~LLEyD~R--------F~~~g--~-~Fvf 154 (258)
|..-+..+...+.+.+. . .++.+|+=|+|=+=|..+. +.. +..+++-+|+|.. ++.+| . +|+.
T Consensus 58 ~~~~~p~~~~~~~~~l~-~--~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~ 134 (215)
T TIGR00080 58 QTISAPHMVAMMTELLE-L--KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV 134 (215)
T ss_pred CEechHHHHHHHHHHhC-C--CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE
Confidence 44444555566655543 2 2678999999998887643 222 2346889998844 33332 1 4555
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
=|..... +. .+.||+|++|++.-.. ...+..++++ ++++++..|.
T Consensus 135 ~d~~~~~--~~--~~~fD~Ii~~~~~~~~------~~~~~~~L~~-gG~lv~~~~~ 179 (215)
T TIGR00080 135 GDGTQGW--EP--LAPYDRIYVTAAGPKI------PEALIDQLKE-GGILVMPVGE 179 (215)
T ss_pred CCcccCC--cc--cCCCCEEEEcCCcccc------cHHHHHhcCc-CcEEEEEEcC
Confidence 5654321 11 2579999999875432 2334445565 5678777664
No 64
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=67.22 E-value=14 Score=32.10 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=47.6
Q ss_pred CCCeEEEEeChhHH--HHHHhhCCCCCceEEeeccccc--------ccCC--ccccccCCCCCCchhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFE--------QYGS--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly--~~lk~~~~~~~~~LLEyD~RF~--------~~g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
++.+|+-|||-+=. ..+.+ ...+++..|.+.-.. ..+. .|+.-|. ..++....++||+||+.-
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMAR--LGADVTGIDASEENIEVARLHALESGLKIDYRQTTA---EELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHH--cCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH---HHhhhhcCCCccEEEEhh
Confidence 46789998875332 23333 234688888874432 1111 2332222 223333347899999865
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 179 PYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 179 PFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.+....-...+-..+..++++ ++.+++++.
T Consensus 123 ~l~~~~~~~~~l~~~~~~L~~-gG~l~v~~~ 152 (233)
T PRK05134 123 MLEHVPDPASFVRACAKLVKP-GGLVFFSTL 152 (233)
T ss_pred HhhccCCHHHHHHHHHHHcCC-CcEEEEEec
Confidence 544322223333444455565 456666553
No 65
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=67.05 E-value=9.9 Score=35.36 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC-C--ccccccCCCCCCch
Q 025067 97 AETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLP 164 (258)
Q Consensus 97 a~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g-~--~FvfYDyn~P~~lp 164 (258)
++.|.+.+.+... .++.+|+=++|=+=...+.-.....+++-+|++..-- ..| + +|+.=|..+ +.
T Consensus 158 ~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~---~~ 234 (315)
T PRK03522 158 AAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQ---FA 234 (315)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHH---HH
Confidence 3445554444322 1357888777765444433222345788888874321 112 1 243333221 11
Q ss_pred hhhccCccEEEECCCCCC
Q 025067 165 LELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 165 ~~lk~~fD~Vv~DPPFls 182 (258)
....++||+||+|||.-+
T Consensus 235 ~~~~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 235 TAQGEVPDLVLVNPPRRG 252 (315)
T ss_pred HhcCCCCeEEEECCCCCC
Confidence 223357999999999765
No 66
>PRK10904 DNA adenine methylase; Provisional
Probab=66.39 E-value=13 Score=34.17 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=34.9
Q ss_pred CccEEEECCCCC----------------CHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh-CCcc
Q 025067 170 AFSVVVVDPPYL----------------SKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL-GLRP 224 (258)
Q Consensus 170 ~fD~Vv~DPPFl----------------seec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll-~~~~ 224 (258)
.-|+|-+||||. ++|=.+.+|+.++.|... +.|+|++.. ..+.|.++| +.++
T Consensus 174 ~~~fvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~La~~l~~l~~~-~~k~ilS~~--d~~~i~elY~~~~i 242 (271)
T PRK10904 174 KGSVVYCDPPYAPLSATANFTAYHTNSFSLEQQAHLAEIAEGLVER-HIPVLISNH--DTMLTREWYQRAKL 242 (271)
T ss_pred CCcEEEECCCCCCCCCCCCCcCcccCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeC--CCHHHHHHHcCCcE
Confidence 456999999994 233345788888887544 457777653 457788888 5444
No 67
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=66.30 E-value=7.9 Score=37.63 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=19.1
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
..||+|++|| |++. ..-+..+++.+.+.
T Consensus 113 ~~fDvIdlDP-fGs~--~~fld~al~~~~~~ 140 (374)
T TIGR00308 113 RKFHVIDIDP-FGTP--APFVDSAIQASAER 140 (374)
T ss_pred CCCCEEEeCC-CCCc--HHHHHHHHHhcccC
Confidence 5699999999 7875 23344556666543
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=66.25 E-value=1.1e+02 Score=28.16 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeeccccc--------ccC--CccccccCCCCCCc
Q 025067 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFE--------QYG--SDFAFYDYNQPQDL 163 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~--------~~g--~~FvfYDyn~P~~l 163 (258)
.|.....+.+.+... ++.+|+=|||=|=+-.+.-. .+..+++.+|+|..-- ..+ .....+... +
T Consensus 144 ~tt~l~l~~l~~~~~-~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~----~ 218 (288)
T TIGR00406 144 PTTSLCLEWLEDLDL-KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY----L 218 (288)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc----c
Confidence 344444444444433 67899999998866544321 2335899999995321 111 111111111 1
Q ss_pred hhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec-hHHHHHHHHHHh
Q 025067 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT-GEVQKERAAELL 220 (258)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T-g~~me~~i~kll 220 (258)
.....++||+||++.. .+.+..+...+..++++ ++.++++. +....+.+.+.+
T Consensus 219 ~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~Lkp-gG~li~sgi~~~~~~~v~~~~ 272 (288)
T TIGR00406 219 EQPIEGKADVIVANIL---AEVIKELYPQFSRLVKP-GGWLILSGILETQAQSVCDAY 272 (288)
T ss_pred ccccCCCceEEEEecC---HHHHHHHHHHHHHHcCC-CcEEEEEeCcHhHHHHHHHHH
Confidence 1223568999999864 34456666667777777 45665543 233333344444
No 69
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=65.46 E-value=37 Score=29.22 Aligned_cols=114 Identities=11% Similarity=0.148 Sum_probs=69.3
Q ss_pred ccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc--------cC-C-cc
Q 025067 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG-S-DF 152 (258)
Q Consensus 83 EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~--------~g-~-~F 152 (258)
|+.-..|||=. .|.+.|.+.+... ..++|+-|||=+=+.++.-...+.+++-+|++...-. .+ . .+
T Consensus 6 ~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~ 81 (195)
T TIGR00477 6 EDYFHKKYGMT-TTHSAVREAVKTV---APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRT 81 (195)
T ss_pred HHHHHHhhCCC-CchHHHHHHhccC---CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCcee
Confidence 44555677776 6777777776554 4579999999766654322112458999999853221 11 1 34
Q ss_pred ccccCCCCCCchhhhccCccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFl--seec~eK~A~Tir~L~k~~~~kiil 206 (258)
...|...+ .+.++||+|++=.+|. +.+=...+...+..++++ ++++++
T Consensus 82 ~~~d~~~~-----~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lli 131 (195)
T TIGR00477 82 DAYDINAA-----ALNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRP-GGYNLI 131 (195)
T ss_pred Eeccchhc-----cccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCC-CcEEEE
Confidence 44454321 1245799999888874 333355666677777777 456444
No 70
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=65.20 E-value=83 Score=26.47 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=63.0
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccc--------cC-CccccccCCCC
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQ--------YG-SDFAFYDYNQP 160 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~--------~g-~~FvfYDyn~P 160 (258)
++.+.++.++-..+.. . ++.+|+=|||=+=+..+ .+..|..+++.+|.+...-. ++ .+..+...+.
T Consensus 14 ~~~~~~r~~~~~~l~~-~-~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~- 90 (187)
T PRK08287 14 MTKEEVRALALSKLEL-H-RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA- 90 (187)
T ss_pred CchHHHHHHHHHhcCC-C-CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc-
Confidence 4555555544333333 2 56788888886554433 33356678999999865422 22 1222222211
Q ss_pred CCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec-hHHHHHHHHHHh
Q 025067 161 QDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT-GEVQKERAAELL 220 (258)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T-g~~me~~i~kll 220 (258)
+..+.++||+|+++-.... +..+-..+..++++ ++++++.. +....+.+.+++
T Consensus 91 ---~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~-gG~lv~~~~~~~~~~~~~~~l 144 (187)
T PRK08287 91 ---PIELPGKADAIFIGGSGGN---LTAIIDWSLAHLHP-GGRLVLTFILLENLHSALAHL 144 (187)
T ss_pred ---hhhcCcCCCEEEECCCccC---HHHHHHHHHHhcCC-CeEEEEEEecHhhHHHHHHHH
Confidence 1233467999999865433 23333444445566 45776653 333333344444
No 71
>PRK03612 spermidine synthase; Provisional
Probab=64.30 E-value=26 Score=35.26 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCC-CCceEEeecccccccCC-cccccc-----CCCCC------Cc---hhhhccCcc
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPE-VSPKILEYDMRFEQYGS-DFAFYD-----YNQPQ------DL---PLELKHAFS 172 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~-~~~~LLEyD~RF~~~g~-~FvfYD-----yn~P~------~l---p~~lk~~fD 172 (258)
+.++|+.||+=+-... +.+ .+. .++.++|+|...-.... +|.+-. ++.|. +. ......+||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5679999998654322 223 354 69999999976554321 111111 11221 11 112246899
Q ss_pred EEEECCCCCCHH-H----HHHHHHHHHHhcCCCCCcEEE
Q 025067 173 VVVVDPPYLSKE-C----LEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 173 ~Vv~DPPFlsee-c----~eK~A~Tir~L~k~~~~kiil 206 (258)
+||+|+|.-... . -+..-+.++.++++ ++.+++
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p-gG~lv~ 413 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP-DGLLVV 413 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCC-CeEEEE
Confidence 999999875311 0 01233456666776 345554
No 72
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=62.17 E-value=7.8 Score=31.50 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=55.2
Q ss_pred CCCeEEEEeChhHHHH--HH-hhCCCCCceEEeecc--------cccccC-C--ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLYAY--LK-KIRPEVSPKILEYDM--------RFEQYG-S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk-~~~~~~~~~LLEyD~--------RF~~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
++.+|+=|||=+=+.. |. +..++.+++.+|++. +++..+ + +|+.=|..+ ++..+.++||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~---l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED---LPQELEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC---GCGCSSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc---cccccCCCeeEEEE
Confidence 3466777776543322 33 335677899999985 333332 1 344445443 33223378999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 177 DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
.+++....-..++-+-+..++++ ++.+++....
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~-~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKP-GGILIISDPN 112 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEE-EEEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCC-CcEEEEEECC
Confidence 99986544355566666666665 3456555543
No 73
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=61.75 E-value=13 Score=36.17 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=23.3
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHH
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKE 214 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~ 214 (258)
..||+|++||| ++.. .-+..+++.+... .||..|-..+..
T Consensus 124 ~~fD~V~lDP~-Gs~~--~~l~~al~~~~~~---gilyvSAtD~~~ 163 (382)
T PRK04338 124 RKFDVVDIDPF-GSPA--PFLDSAIRSVKRG---GLLCVTATDTAP 163 (382)
T ss_pred CCCCEEEECCC-CCcH--HHHHHHHHHhcCC---CEEEEEecCchh
Confidence 56999999997 6641 2223335555443 566666433333
No 74
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=61.33 E-value=49 Score=30.75 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=67.6
Q ss_pred CCCeEEEEeChhHHHHHH--hhCCCCCceEEeecccccccCC------------ccccccCCCCCCchhhh-ccCccEEE
Q 025067 111 SDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFEQYGS------------DFAFYDYNQPQDLPLEL-KHAFSVVV 175 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF~~~g~------------~FvfYDyn~P~~lp~~l-k~~fD~Vv 175 (258)
..++|+=|||=+=...|- .+.+..++...|++.|=..+.. +++.-|.++ +...+ ..+||+||
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~---~~~~~~~~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKE---FLKALVFASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHH---hhhcccccccCEEE
Confidence 367898888877665543 3345579999999988654321 455666543 22223 24699999
Q ss_pred ECCCCCCH--H-H---------------HHHHHHHHHHhcCCCCCcEEEech-HHHHHHHHHH--hCCcccceeecCC
Q 025067 176 VDPPYLSK--E-C---------------LEKVSETVSFLARPGDSKLLLLTG-EVQKERAAEL--LGLRPCGFRPQHS 232 (258)
Q Consensus 176 ~DPPFlse--e-c---------------~eK~A~Tir~L~k~~~~kiil~Tg-~~me~~i~kl--l~~~~~~F~P~h~ 232 (258)
+-|||--. . | ++-+-.+++.|+|+ ++++.++-. ++-.+++.-+ +++.+...+.-|+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~-~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP-GGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC-CCEEEEEecHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 99999632 1 1 22234455666776 456544443 4444444422 2444444444444
No 75
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=57.71 E-value=23 Score=33.84 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccc--------ccC-CccccccCCCCCC
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG-SDFAFYDYNQPQD 162 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~--------~~g-~~FvfYDyn~P~~ 162 (258)
....+.|.+.+.+.+...+.+|+=++|=+=... |.+.. .+++..|.+..=- ..| .+..|+.... .+
T Consensus 180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~-~~ 256 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA-EE 256 (353)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH-HH
Confidence 455677777777765312346765555553333 33322 3678888774221 111 1212221111 11
Q ss_pred -chhh-----h---c------cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcE--EEechHHHHHHHHHH
Q 025067 163 -LPLE-----L---K------HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKL--LLLTGEVQKERAAEL 219 (258)
Q Consensus 163 -lp~~-----l---k------~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~ki--il~Tg~~me~~i~kl 219 (258)
++.. + + ..+|+||+|||--+ +.. .++++|.++. +| |.|...-+..=+..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G--~~~---~~l~~l~~~~--~ivYvsC~p~tlaRDl~~L 323 (353)
T TIGR02143 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG--LDP---DTCKLVQAYE--RILYISCNPETLKANLEQL 323 (353)
T ss_pred HHHHHhhccccccccccccccCCCCEEEECCCCCC--CcH---HHHHHHHcCC--cEEEEEcCHHHHHHHHHHH
Confidence 1110 1 1 23899999999544 233 4455666652 43 557776666555554
No 76
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=57.71 E-value=34 Score=32.42 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=18.0
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcC
Q 025067 171 FSVVVVDPPYLSKECLEKVSETVSFLAR 198 (258)
Q Consensus 171 fD~Vv~DPPFlseec~eK~A~Tir~L~k 198 (258)
--+|+|||||--.+=-..+..|++.-.+
T Consensus 157 RglVLIDPPfE~~~eY~rvv~~l~~~~k 184 (279)
T COG2961 157 RGLVLIDPPFELKDEYQRVVEALAEAYK 184 (279)
T ss_pred ceEEEeCCCcccccHHHHHHHHHHHHHH
Confidence 4499999999876434445555544333
No 77
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=57.02 E-value=35 Score=30.79 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=55.4
Q ss_pred ccccc-cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccccc--------CC-cccc
Q 025067 85 WRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY--------GS-DFAF 154 (258)
Q Consensus 85 wqlSQ-FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~--------g~-~Fvf 154 (258)
..+.| |--+.+.++.+++.+.-. ++.+|+=|||-+=.-.+.-..-..+++.+|+|.+.... +. +++.
T Consensus 5 k~~GQnfl~d~~~~~~iv~~~~~~---~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~ 81 (258)
T PRK14896 5 KKLGQHFLIDDRVVDRIVEYAEDT---DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE 81 (258)
T ss_pred CcCCccccCCHHHHHHHHHhcCCC---CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence 45667 668889999998876322 56788888887654433211113579999999665432 11 2333
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
=|..+ ++ + ..+|.||.-|||.-
T Consensus 82 ~D~~~---~~--~-~~~d~Vv~NlPy~i 103 (258)
T PRK14896 82 GDALK---VD--L-PEFNKVVSNLPYQI 103 (258)
T ss_pred ecccc---CC--c-hhceEEEEcCCccc
Confidence 34322 11 1 23799999999974
No 78
>PRK01581 speE spermidine synthase; Validated
Probab=56.83 E-value=50 Score=32.55 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHH---HHHhhCCCCCceEEeecccc
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYA---YLKKIRPEVSPKILEYDMRF 145 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~---~lk~~~~~~~~~LLEyD~RF 145 (258)
+.|+.-...... +..+|+.||+=.-+. .++. .+..++.+.|+|.+-
T Consensus 138 E~Lvhp~m~~h~-~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeV 186 (374)
T PRK01581 138 EALVHPIMSKVI-DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSM 186 (374)
T ss_pred HHHHHHHHHhCC-CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHH
Confidence 445554443333 568999999976553 2221 234689999999764
No 79
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=56.77 E-value=19 Score=33.75 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=55.3
Q ss_pred ccccccccccc-ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccccC-CccccccC
Q 025067 82 SEDWRLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYG-SDFAFYDY 157 (258)
Q Consensus 82 ~EDwqlSQFWY-sd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~g-~~FvfYDy 157 (258)
.-...+.|-|. +...+..+++.+.-. ++.+|+=|||-+=.-. |.+. ..+++.+|+|.|+..+. ..|-.+..
T Consensus 9 ~~kk~~GQnFL~d~~i~~~Iv~~~~~~---~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~ 83 (294)
T PTZ00338 9 VFNKKFGQHILKNPLVLDKIVEKAAIK---PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPL 83 (294)
T ss_pred CcCCCCCccccCCHHHHHHHHHhcCCC---CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCC
Confidence 44667889775 667777777765322 5678888887754443 3332 35799999998776431 11211110
Q ss_pred CCCC-----CchhhhccCccEEEECCCCCC
Q 025067 158 NQPQ-----DLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 158 n~P~-----~lp~~lk~~fD~Vv~DPPFls 182 (258)
.... ++.+.-...||+||+.|||--
T Consensus 84 ~~~v~ii~~Dal~~~~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 84 ASKLEVIEGDALKTEFPYFDVCVANVPYQI 113 (294)
T ss_pred CCcEEEEECCHhhhcccccCEEEecCCccc
Confidence 0000 011000135799999999973
No 80
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=56.66 E-value=9.3 Score=35.37 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccccc-CCccccccCCCCCCchhhhc--cCccEEEE
Q 025067 100 VAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY-GSDFAFYDYNQPQDLPLELK--HAFSVVVV 176 (258)
Q Consensus 100 La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~-g~~FvfYDyn~P~~lp~~lk--~~fD~Vv~ 176 (258)
|+..+++. .+.-++|===|+-++.|++.. .-|+|..++ .+.|- .+...+. .+--+|+|
T Consensus 71 ia~~llR~---qDrl~l~ELHp~d~~~L~~~~--------~~~~~v~v~~~DG~~--------~l~allPP~~rRglVLI 131 (245)
T PF04378_consen 71 IAARLLRE---QDRLVLFELHPQDFEALKKNF--------RRDRRVRVHHRDGYE--------GLKALLPPPERRGLVLI 131 (245)
T ss_dssp HHHHHS-T---TSEEEEE--SHHHHHHHTTS----------TTS-EEEE-S-HHH--------HHHHH-S-TTS-EEEEE
T ss_pred HHHHhCCc---cceEEEEecCchHHHHHHHHh--------ccCCccEEEeCchhh--------hhhhhCCCCCCCeEEEE
Confidence 44444444 235566666677777776532 123444443 11111 1222332 22349999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCC
Q 025067 177 DPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 177 DPPFlseec~eK~A~Tir~L~k~ 199 (258)
||||-..+=-+.++.+++...+.
T Consensus 132 DPpYE~~~dy~~v~~~l~~a~kR 154 (245)
T PF04378_consen 132 DPPYEQKDDYQRVVDALAKALKR 154 (245)
T ss_dssp -----STTHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHh
Confidence 99999765467777777766665
No 81
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=56.62 E-value=34 Score=38.16 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh----CCC-------CCceEEeecccccccCCccccccCCCCCC
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI----RPE-------VSPKILEYDMRFEQYGSDFAFYDYNQPQD 162 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~----~~~-------~~~~LLEyD~RF~~~g~~FvfYDyn~P~~ 162 (258)
|.|..+|-+-|.--++ ++.+||.-|||.=|++|.++ .++ .++.| |-+. .--.
T Consensus 1024 dHSSaRiERfLqlcAe-~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmL-----R~Ka-----------A~S~ 1086 (1228)
T PRK12270 1024 DHSSARIERFLQLCAE-GNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSML-----RLKA-----------AVSD 1086 (1228)
T ss_pred CcchHHHHHHHHhhcc-CCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhh-----cchh-----------hcCC
Confidence 3455555555443344 78899999999999998764 111 12222 1110 0001
Q ss_pred chhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHH
Q 025067 163 LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219 (258)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kl 219 (258)
+.++..++|.-||-||=....+ + -.|||||+|.+--+++.+-
T Consensus 1087 vedFT~g~F~pVi~D~~~~~~~-------------~--V~RVlLcSGKvYYdL~a~R 1128 (1228)
T PRK12270 1087 VEDFTEGKFRPVIDDPTVDDGA-------------K--VRRVLLCSGKLYYDLAARR 1128 (1228)
T ss_pred HHHhccCCceecCCCCCCCCcc-------------c--eeEEEEEcchhHHHHHHHH
Confidence 2233368899999999877652 1 1289999998888876643
No 82
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=56.46 E-value=65 Score=24.25 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=46.9
Q ss_pred CCeEEEEeChhHHH--HHHhhCCCCCceEEeecccc--------cccC-C--ccccccCCCCCCchhhhccCccEEEECC
Q 025067 112 DSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG-S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 112 ~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF--------~~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
+.+|+=|+|=+=+. .+.+..|..+++.+|+.... +.++ . +|+..|.... +.....+||+|+++.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA---LEDSLPEPDRVFIGG 96 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc---ChhhcCCCCEEEECC
Confidence 46777777733332 23333455688999987442 2222 1 3444444321 122345899999987
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 179 PYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 179 PFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
+... ...+-..+..++++ ++.+++
T Consensus 97 ~~~~---~~~~l~~~~~~Lk~-gG~li~ 120 (124)
T TIGR02469 97 SGGL---LQEILEAIWRRLRP-GGRIVL 120 (124)
T ss_pred cchh---HHHHHHHHHHHcCC-CCEEEE
Confidence 5432 34555555555565 345544
No 83
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=55.82 E-value=31 Score=28.77 Aligned_cols=66 Identities=24% Similarity=0.115 Sum_probs=37.3
Q ss_pred CCCeEEEEeChh--HHHHHHhhCCCCCceEEeecccccccC-C--------ccccccCCCCCCchhhhccCccEEEECCC
Q 025067 111 SDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQYG-S--------DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 111 ~~~~IaclstPS--ly~~lk~~~~~~~~~LLEyD~RF~~~g-~--------~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
++.+|+=|||-+ +-..+.+. ..+++.+|+|.++.... . +++.=|..+- .++ .+.+|+||.+||
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-~~~---~~~~d~vi~n~P 86 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-DLP---KLQPYKVVGNLP 86 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-Ccc---ccCCCEEEECCC
Confidence 456787777764 33334332 45899999997665321 1 1222222110 011 125899999999
Q ss_pred CCC
Q 025067 180 YLS 182 (258)
Q Consensus 180 Fls 182 (258)
|--
T Consensus 87 y~~ 89 (169)
T smart00650 87 YNI 89 (169)
T ss_pred ccc
Confidence 974
No 84
>PLN02476 O-methyltransferase
Probab=55.47 E-value=60 Score=30.53 Aligned_cols=106 Identities=14% Similarity=0.064 Sum_probs=66.4
Q ss_pred cccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh--C-CCCCceEEeecccccccCC-ccccccCCC----
Q 025067 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI--R-PEVSPKILEYDMRFEQYGS-DFAFYDYNQ---- 159 (258)
Q Consensus 88 SQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~--~-~~~~~~LLEyD~RF~~~g~-~FvfYDyn~---- 159 (258)
+|-..+.++...|.-.+... +.++|+=|||=+=|.+|.-. . ++.+++-+|.|......+. .|-.+.+..
T Consensus 98 ~~~~v~~~~g~lL~~L~~~~---~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~l 174 (278)
T PLN02476 98 SQMQVSPDQAQLLAMLVQIL---GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNV 174 (278)
T ss_pred CccccCHHHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 67788999988888777665 56899999998888887432 2 3457899999986654431 333333321
Q ss_pred ----CCCchhhh-----ccCccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 160 ----PQDLPLEL-----KHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 160 ----P~~lp~~l-----k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
..++...+ .++||+|++|++= ...+.-+-.+++ |+++
T Consensus 175 i~GdA~e~L~~l~~~~~~~~FD~VFIDa~K--~~Y~~y~e~~l~-lL~~ 220 (278)
T PLN02476 175 KHGLAAESLKSMIQNGEGSSYDFAFVDADK--RMYQDYFELLLQ-LVRV 220 (278)
T ss_pred EEcCHHHHHHHHHhcccCCCCCEEEECCCH--HHHHHHHHHHHH-hcCC
Confidence 11222223 2579999999983 333333333344 4555
No 85
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=53.95 E-value=28 Score=25.59 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=36.5
Q ss_pred ccCccEEEEC--CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVD--PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~D--PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
++.+|+||+| .|=.+- ..+.+.++... + +.++|+.|.......+.+.+..-..+|-++
T Consensus 41 ~~~~d~iiid~~~~~~~~---~~~~~~i~~~~-~-~~~ii~~t~~~~~~~~~~~~~~g~~~~l~k 100 (112)
T PF00072_consen 41 KHPPDLIIIDLELPDGDG---LELLEQIRQIN-P-SIPIIVVTDEDDSDEVQEALRAGADDYLSK 100 (112)
T ss_dssp HSTESEEEEESSSSSSBH---HHHHHHHHHHT-T-TSEEEEEESSTSHHHHHHHHHTTESEEEES
T ss_pred ccCceEEEEEeeeccccc---ccccccccccc-c-cccEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence 3558999988 333332 33445555554 2 458999998888787888875555555444
No 86
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=53.78 E-value=1.5e+02 Score=25.91 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=68.9
Q ss_pred CCCeEEEEeChhHH--HHHHhhC-CCCCceEEeecccccccCC-ccccccCCCCCCchh---hh-ccCccEEEECC-C-C
Q 025067 111 SDSRVACIACPTLY--AYLKKIR-PEVSPKILEYDMRFEQYGS-DFAFYDYNQPQDLPL---EL-KHAFSVVVVDP-P-Y 180 (258)
Q Consensus 111 ~~~~IaclstPSly--~~lk~~~-~~~~~~LLEyD~RF~~~g~-~FvfYDyn~P~~lp~---~l-k~~fD~Vv~DP-P-F 180 (258)
++.+|+=|||=+=. ..+.+.. +...++-+|++.. ...++ .|+.=|...+..++. .+ .++||+|++|+ | |
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~ 129 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNM 129 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCcc
Confidence 56678777765533 2344432 3458999999872 22333 566667766543332 23 35799999986 4 3
Q ss_pred CCHHH---------HHHHHHHHHHhcCCCCCcEEE-e-chHHHHHHHHHHh-C-CcccceeecCCCCCCCcee
Q 025067 181 LSKEC---------LEKVSETVSFLARPGDSKLLL-L-TGEVQKERAAELL-G-LRPCGFRPQHSSKLGNEFR 240 (258)
Q Consensus 181 lseec---------~eK~A~Tir~L~k~~~~kiil-~-Tg~~me~~i~kll-~-~~~~~F~P~h~n~L~Nef~ 240 (258)
.+... .+.+-..+..++++ ++.+++ + .|....+++.++- . .+.-.++|...+.-+.|+.
T Consensus 130 ~g~~~~d~~~~~~~~~~~L~~~~~~Lkp-GG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~ 201 (209)
T PRK11188 130 SGTPAVDIPRAMYLVELALDMCRDVLAP-GGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 201 (209)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeE
Confidence 32211 12333444555566 345544 2 3344455555542 1 1223478887766565543
No 87
>PRK04457 spermidine synthase; Provisional
Probab=52.16 E-value=38 Score=30.88 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=49.2
Q ss_pred CCCeEEEEeChhHH--HHHHhhCCCCCceEEeecccccccC----------C--ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYG----------S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly--~~lk~~~~~~~~~LLEyD~RF~~~g----------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
...+|+.||+=+=. ..+.+..|..++..+|+|.-.-... + +++.-|..+ +-....++||+|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~---~l~~~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE---YIAVHRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH---HHHhCCCCCCEEEE
Confidence 45789999885544 3355557888999999985433221 1 233333211 11123467999999
Q ss_pred CCCCCCHH-----HHHHHHHHHHHhcCCCCCcEEE
Q 025067 177 DPPYLSKE-----CLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 177 DPPFlsee-----c~eK~A~Tir~L~k~~~~kiil 206 (258)
|. |.+.. +...+-+.++.++++ ++.+++
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~p-gGvlvi 175 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSS-DGIFVV 175 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCC-CcEEEE
Confidence 94 33221 112333444455555 345554
No 88
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.68 E-value=37 Score=26.16 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=35.8
Q ss_pred ccCCccccc---cCCCCCC--chhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHH
Q 025067 147 QYGSDFAFY---DYNQPQD--LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKE 214 (258)
Q Consensus 147 ~~g~~FvfY---Dyn~P~~--lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~ 214 (258)
.+|.++.++ +...+.. ||..++. .|+||+===|.|-. +...++..++..+.+++.+-+.-...
T Consensus 21 ~~G~~~~~hg~~~~~~~~~~~l~~~i~~-aD~VIv~t~~vsH~----~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 21 KYGGKLIHHGRDGGDEKKASRLPSKIKK-ADLVIVFTDYVSHN----AMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred HcCCEEEEEecCCCCccchhHHHHhcCC-CCEEEEEeCCcChH----HHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 356577777 3333433 6666653 58776633355554 45556666665555677776433333
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=51.50 E-value=1.5e+02 Score=25.24 Aligned_cols=115 Identities=8% Similarity=0.102 Sum_probs=60.5
Q ss_pred CCCeEEEEeChhHHHHHH--h-hCCCCCceEEeecccccc--------cC--C--ccccccCCCCCCchhhhccCccEEE
Q 025067 111 SDSRVACIACPTLYAYLK--K-IRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk--~-~~~~~~~~LLEyD~RF~~--------~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (258)
.+.+|+=|||-+=+..+. + ..+..+++.+|.+.+... +| . .++.-|.. ++...+.+.||+|+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~---~~l~~~~~~~D~V~ 116 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP---EILFTINEKFDRIF 116 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh---hhHhhcCCCCCEEE
Confidence 567999999977655543 2 234568999999865432 33 1 22222321 22233456899999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE--echHHHHHHHHHH--hCCcccceeecCC
Q 025067 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLL--LTGEVQKERAAEL--LGLRPCGFRPQHS 232 (258)
Q Consensus 176 ~DPPFlseec~eK~A~Tir~L~k~~~~kiil--~Tg~~me~~i~kl--l~~~~~~F~P~h~ 232 (258)
+.... .+. ..+-..+..++++ ++++++ ++-+.....+.-+ +|+..-..+..+.
T Consensus 117 ~~~~~--~~~-~~~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 173 (198)
T PRK00377 117 IGGGS--EKL-KEIISASWEIIKK-GGRIVIDAILLETVNNALSALENIGFNLEITEVIIA 173 (198)
T ss_pred ECCCc--ccH-HHHHHHHHHHcCC-CcEEEEEeecHHHHHHHHHHHHHcCCCeEEEEEehh
Confidence 97632 222 3333344445566 457665 3444444432222 3544433444443
No 90
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=49.20 E-value=60 Score=32.10 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=51.6
Q ss_pred CCCeEEEE--eChhHHHHHHhhCCCCCceEEeecccccccCCccccccCCCCCCchhhh----ccCccEEEECCCCCCHH
Q 025067 111 SDSRVACI--ACPTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLEL----KHAFSVVVVDPPYLSKE 184 (258)
Q Consensus 111 ~~~~Iacl--stPSly~~lk~~~~~~~~~LLEyD~RF~~~g~~FvfYDyn~P~~lp~~l----k~~fD~Vv~DPPFlsee 184 (258)
.+.|||++ +.+.+|..+.+. .-.|.+||+.+| ++..+ ....++|++=|-.+..
T Consensus 142 ~g~r~a~~~~~~~~ly~~~~~~------------------~~~~~~~~l~~~--~~~~l~~L~~~~P~~L~g~pS~l~~- 200 (430)
T TIGR02304 142 AKHRIAFFLRADNNLYQSVNNR------------------WISLDFFDLLAP--FQAHIKRLNQRKPSIIVAPPSVLRA- 200 (430)
T ss_pred cCCcEEEEEccChhHHHHHHhc------------------cceeeecCCCcC--HHHHHHHHHHhCCCEEEEcHHHHHH-
Confidence 34688888 455777665542 014778888855 45444 3557789888877644
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEechHHH----HHHHHHHhCCcc
Q 025067 185 CLEKVSETVSFLARPGDSKLLLLTGEVQ----KERAAELLGLRP 224 (258)
Q Consensus 185 c~eK~A~Tir~L~k~~~~kiil~Tg~~m----e~~i~kll~~~~ 224 (258)
+|+.++.-.-....|.|+++|+.. .+.|++.+|++.
T Consensus 201 ----LA~~~~~~~l~~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V 240 (430)
T TIGR02304 201 ----LALEVMEGELTIKPKKVISVAEVLEPQDRELIRNVFKNTV 240 (430)
T ss_pred ----HHHHHHhcCCCCCceEEEEccCCCCHHHHHHHHHHhCCCe
Confidence 444333211011347788888644 455666666543
No 91
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=48.97 E-value=48 Score=33.31 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=67.0
Q ss_pred cccccChhHHHHHHHHHHh-hcCCCCCeEEEEeChhHHHHHH--hh-CCCCCceEEeecc-cccc-------cC-Cc--c
Q 025067 88 SQFWYDAVTAETVAQEAVS-LCSDSDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDM-RFEQ-------YG-SD--F 152 (258)
Q Consensus 88 SQFWYsd~Ta~~La~~l~~-~a~~~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~-RF~~-------~g-~~--F 152 (258)
+-.+|-.+-+..++-.++. ... ++.+|+=+||-.==+... .. ..+..++-.|++. |.+. +| .+ -
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~~~~-pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v 168 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFADDN-APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVAL 168 (470)
T ss_pred CCcEEEECHHHHHHHHHhccCCC-CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 3456666666666555442 222 667888887753333221 11 1223566677763 3322 23 11 2
Q ss_pred ccccCCCCCCchhhhccCccEEEECCCCCCHHH---------------HHHHHH-------HHHHhcCCCCCcEEE--ec
Q 025067 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYLSKEC---------------LEKVSE-------TVSFLARPGDSKLLL--LT 208 (258)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec---------------~eK~A~-------Tir~L~k~~~~kiil--~T 208 (258)
+..| +..++..+.+.||+|++|+|=-++-. +..++. .+-.++|+ ++.|+- ||
T Consensus 169 ~~~D---~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp-GG~LVYSTCT 244 (470)
T PRK11933 169 THFD---GRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP-GGTLVYSTCT 244 (470)
T ss_pred EeCc---hhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEECCC
Confidence 2233 34455556678999999999553321 122222 22223455 445544 44
Q ss_pred --hHHHHHHHHHHh
Q 025067 209 --GEVQKERAAELL 220 (258)
Q Consensus 209 --g~~me~~i~kll 220 (258)
.+.+|..|..+|
T Consensus 245 ~~~eENE~vV~~~L 258 (470)
T PRK11933 245 LNREENQAVCLWLK 258 (470)
T ss_pred CCHHHHHHHHHHHH
Confidence 378888888776
No 92
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=47.23 E-value=49 Score=32.13 Aligned_cols=137 Identities=22% Similarity=0.287 Sum_probs=83.4
Q ss_pred cCcccccccccc-cChhHHHHHHHHHHhhcCCCCCeEEEEe---ChhHHHHHHhh-CCCCCceEEeecccccccCCcccc
Q 025067 80 LVSEDWRLSQFW-YDAVTAETVAQEAVSLCSDSDSRVACIA---CPTLYAYLKKI-RPEVSPKILEYDMRFEQYGSDFAF 154 (258)
Q Consensus 80 ~~~EDwqlSQFW-Ysd~Ta~~La~~l~~~a~~~~~~Iacls---tPSly~~lk~~-~~~~~~~LLEyD~RF~~~g~~Fvf 154 (258)
.|=.||.-||+= =-.=|.+.||+.+......+...|=+|+ ||.+..-|... ....+ .| +.
T Consensus 133 VfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~lp~Ile~l~~~~~~------------iP---vv 197 (335)
T COG1313 133 VFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPHLPFILEALRYASEN------------IP---VV 197 (335)
T ss_pred EEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCchHHHHHHHHHHhcC------------CC---EE
Confidence 466899999984 1122455666666555433678999999 77776665542 00000 12 45
Q ss_pred ccCCC--CCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHH----------hcCCCCC----------cEEEechHHH
Q 025067 155 YDYNQ--PQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSF----------LARPGDS----------KLLLLTGEVQ 212 (258)
Q Consensus 155 YDyn~--P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~----------L~k~~~~----------kiil~Tg~~m 212 (258)
||-|- ..+.-.-|.|-.|+=+.|==|++.+|-+|++.+-++ .....+. .|-.||-.++
T Consensus 198 wNSnmY~s~E~l~lL~gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghlecCTkpI~ 277 (335)
T COG1313 198 WNSNMYMSEETLKLLDGVVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLECCTKPIL 277 (335)
T ss_pred EecCCccCHHHHHHhhccceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchhhccHHHH
Confidence 55332 122335568999999999999999999998765322 2222111 2333687666
Q ss_pred HHHHHHHhCC-----cccceeecCC
Q 025067 213 KERAAELLGL-----RPCGFRPQHS 232 (258)
Q Consensus 213 e~~i~kll~~-----~~~~F~P~h~ 232 (258)
+ +|.+.+|- -|-+|+|.|.
T Consensus 278 ~-wiae~~g~~~~vNiM~QY~P~yk 301 (335)
T COG1313 278 R-WIAENLGNDVRVNIMFQYRPEYK 301 (335)
T ss_pred H-HHHHhCCCCeeEEehhhccchhh
Confidence 4 56667652 3578888875
No 93
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=47.13 E-value=57 Score=24.39 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=45.5
Q ss_pred CCeEEEEeChhHHHHHH--hhCCCCCceEEeeccccccc----------CC--ccccccCCCCCCchhhhccCccEEEEC
Q 025067 112 DSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFEQY----------GS--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 112 ~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF~~~----------g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
+.+|+=|||=+=...+. +..++.+++-+|++...-.+ ++ .|+.=|. .........||+|++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA----EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC----HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc----ccCcccCCCCCEEEEC
Confidence 35666666654333322 22355667777776432211 11 3444443 1112233569999999
Q ss_pred CCC----CC-HHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 178 PPY----LS-KECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 178 PPF----ls-eec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
- | +- .+-..++-+.++.++++ ++++++.+
T Consensus 78 ~-~~~~~~~~~~~~~~~l~~~~~~L~p-gG~lvi~~ 111 (112)
T PF12847_consen 78 G-FTLHFLLPLDERRRVLERIRRLLKP-GGRLVINT 111 (112)
T ss_dssp S-GSGGGCCHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred C-CccccccchhHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 9 4 22 22234445556666666 45666643
No 94
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=46.48 E-value=87 Score=27.54 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=51.1
Q ss_pred CCCeEEEEeChhHHH--HHHhhCCCCCceEEeeccccccc-----C-CccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----G-SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 111 ~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF~~~-----g-~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
...+|+-|||=+=.. .|.+ .+.+++.+|++...-.. . ..|+.-|... +| .-.++||+|+...++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~---~~-~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKDAADHYLAGDIES---LP-LATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCccc---Cc-CCCCcEEEEEECchhhh
Confidence 457899998865433 3333 34688999997654321 1 1466666543 22 11357999999877643
Q ss_pred -HHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 183 -KECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 183 -eec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.+. .++-.-+..++++ ++.+++.|
T Consensus 116 ~~d~-~~~l~~~~~~Lk~-gG~l~~~~ 140 (251)
T PRK10258 116 CGNL-STALRELYRVVRP-GGVVAFTT 140 (251)
T ss_pred cCCH-HHHHHHHHHHcCC-CeEEEEEe
Confidence 222 3333334444555 44666654
No 95
>PRK10742 putative methyltransferase; Provisional
Probab=46.44 E-value=13 Score=34.70 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=34.4
Q ss_pred CCCeEEEEeChhHHHHHHhhCCC--CCceEEe-ecccccccCCccccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 111 SDSRVACIACPTLYAYLKKIRPE--VSPKILE-YDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~--~~~~LLE-yD~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
+...+++=..|.++.-|+...-+ .+.-+-+ +-.|...+..+..-| ...+...||+|.+||||-.+
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~--------L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA--------LTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH--------HhhCCCCCcEEEECCCCCCC
Confidence 34566777788888877752100 0111111 234555542111111 11123469999999999986
No 96
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=46.36 E-value=1.2e+02 Score=27.23 Aligned_cols=87 Identities=13% Similarity=0.022 Sum_probs=49.3
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeecccccccC-CccccccCCC------
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRFEQYG-SDFAFYDYNQ------ 159 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~RF~~~g-~~FvfYDyn~------ 159 (258)
-+=+.++...|.-.+... +.++|+=|||=+=|-.+ -.. .+..+++-+|+|..+.... .+|-...+..
T Consensus 50 ~~v~~~~g~~L~~l~~~~---~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~ 126 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIM---NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ 126 (234)
T ss_pred cccCHHHHHHHHHHHHHh---CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 344556655554444333 56899999987777544 222 2356899999998665432 1222222211
Q ss_pred --CCCchhhh-----ccCccEEEECCC
Q 025067 160 --PQDLPLEL-----KHAFSVVVVDPP 179 (258)
Q Consensus 160 --P~~lp~~l-----k~~fD~Vv~DPP 179 (258)
..++...+ .++||+|++|.+
T Consensus 127 gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 127 SDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred ccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 11221222 357999999954
No 97
>PLN02672 methionine S-methyltransferase
Probab=43.85 E-value=75 Score=35.44 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=63.5
Q ss_pred CeEEEEeChhHHHHH--HhhCCCCCceEEeeccccccc-------------------------CC--ccccccCCCCCCc
Q 025067 113 SRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQY-------------------------GS--DFAFYDYNQPQDL 163 (258)
Q Consensus 113 ~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~~-------------------------g~--~FvfYDyn~P~~l 163 (258)
.+|+=|||=|=...+ .+..+..+++.+|++.+=-.. .+ +|+.=|+.++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-- 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-- 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc--
Confidence 588888888866655 344566688888888432110 01 45555654432
Q ss_pred hhhhccCccEEEECCCCCCHHHH--------------------------------------HHHHHHHHHhcCCCCCcEE
Q 025067 164 PLELKHAFSVVVVDPPYLSKECL--------------------------------------EKVSETVSFLARPGDSKLL 205 (258)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~--------------------------------------eK~A~Tir~L~k~~~~kii 205 (258)
.....+||+||.-|||+...-. .+++..+..++++ ++.++
T Consensus 198 -~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p-gG~l~ 275 (1082)
T PLN02672 198 -RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP-MGIMI 275 (1082)
T ss_pred -cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC-CCEEE
Confidence 1112369999999999853212 2222333334444 45789
Q ss_pred EechHHHHHHHH-HHh
Q 025067 206 LLTGEVQKERAA-ELL 220 (258)
Q Consensus 206 l~Tg~~me~~i~-kll 220 (258)
+=.|+...+-+. +++
T Consensus 276 lEiG~~q~~~v~~~l~ 291 (1082)
T PLN02672 276 FNMGGRPGQAVCERLF 291 (1082)
T ss_pred EEECccHHHHHHHHHH
Confidence 999998888777 576
No 98
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=43.39 E-value=44 Score=31.93 Aligned_cols=48 Identities=8% Similarity=0.239 Sum_probs=33.2
Q ss_pred hhhccCccEEEECCCCCCHHHHH--HHHHHHHHhcCCCCCcEEEechHHHHH
Q 025067 165 LELKHAFSVVVVDPPYLSKECLE--KVSETVSFLARPGDSKLLLLTGEVQKE 214 (258)
Q Consensus 165 ~~lk~~fD~Vv~DPPFlseec~e--K~A~Tir~L~k~~~~kiil~Tg~~me~ 214 (258)
..+-|..++||.|=||-+.+.+. -+-..|.-|... ++-||++| -+|+.
T Consensus 143 saviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~-GatIifSs-H~Me~ 192 (300)
T COG4152 143 SAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE-GATIIFSS-HRMEH 192 (300)
T ss_pred HHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc-CCEEEEec-chHHH
Confidence 34468899999999999977653 344445555554 56688877 57765
No 99
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=43.26 E-value=1.5e+02 Score=28.88 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=68.6
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccccCCccccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHH
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVS 190 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A 190 (258)
.+++|++|+.=+|=..+-++..... .++.|..|+..-+....-|. .+++++++.+. ..|+||+=.|- +.+...-+-
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~-~~~~d~~~~~~-~sD~ivv~~pL-t~~T~~liN 236 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYY-AEFVDIEELLA-NSDVIVVNCPL-TKETRHLIN 236 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHhc-ccccCHHHHHh-hCCEEEEecCC-CHHHHHHhh
Confidence 5789999999999888776533356 78899999987543222222 23777777665 47999999884 443222111
Q ss_pred HHHHHhcCCCCCcEEEech---HHHHHHHHHHh--------CCcccceee
Q 025067 191 ETVSFLARPGDSKLLLLTG---EVQKERAAELL--------GLRPCGFRP 229 (258)
Q Consensus 191 ~Tir~L~k~~~~kiil~Tg---~~me~~i~kll--------~~~~~~F~P 229 (258)
-+.|.+.+.+=+|+-|+ ...++.+.+.| |+....-+|
T Consensus 237 --k~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP 284 (336)
T KOG0069|consen 237 --KKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP 284 (336)
T ss_pred --HHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC
Confidence 12344432223566665 23344444332 777777777
No 100
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=43.09 E-value=18 Score=31.84 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.1
Q ss_pred chhhhccCccEEEECCCCCCHH
Q 025067 163 LPLELKHAFSVVVVDPPYLSKE 184 (258)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlsee 184 (258)
|...|..++++|||.|.-|++|
T Consensus 24 Le~ALe~~~~~IVIEP~~LGde 45 (165)
T PF14972_consen 24 LERALEAKVSYIVIEPTRLGDE 45 (165)
T ss_pred HHHHHHhCCCEEEECCccccHH
Confidence 3445578899999999999995
No 101
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=41.41 E-value=13 Score=32.29 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=9.5
Q ss_pred ccEEEECCCCCCHHH
Q 025067 171 FSVVVVDPPYLSKEC 185 (258)
Q Consensus 171 fD~Vv~DPPFlseec 185 (258)
+|+|++|||.++.+-
T Consensus 70 ~D~vFlSPPWGGp~Y 84 (163)
T PF09445_consen 70 FDVVFLSPPWGGPSY 84 (163)
T ss_dssp -SEEEE---BSSGGG
T ss_pred ccEEEECCCCCCccc
Confidence 899999999998654
No 102
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=41.13 E-value=33 Score=32.83 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=59.3
Q ss_pred CCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccccc--------C-Cc-cccccCCCCCCchhhhccCccEEEECCC
Q 025067 112 DSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------G-SD-FAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 112 ~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~--------g-~~-FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
..+|+=+||=-=+-. +.+..|..++.|.|.|.|==.. + +. ++|.+-. -+..+++||+||+-||
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-----~~~v~~kfd~IisNPP 233 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL-----YEPVEGKFDLIISNPP 233 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-----cccccccccEEEeCCC
Confidence 457888887654443 3445788899999999763111 1 12 4555421 1223458999999999
Q ss_pred CCC-HHHH-----HHHHHHHHHhcCCCCCcEE-Eech-HHHHHHHHHHhC
Q 025067 180 YLS-KECL-----EKVSETVSFLARPGDSKLL-LLTG-EVQKERAAELLG 221 (258)
Q Consensus 180 Fls-eec~-----eK~A~Tir~L~k~~~~kii-l~Tg-~~me~~i~kll~ 221 (258)
|-. .+.. +-+..+.+.|... ++|. +.-| -.-++.+.+++|
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~g--GeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPG--GELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccC--CEEEEEEcCCCChHHHHHHhcC
Confidence 974 3322 3344455556554 3442 2222 334566777775
No 103
>PRK00536 speE spermidine synthase; Provisional
Probab=40.38 E-value=83 Score=29.29 Aligned_cols=91 Identities=10% Similarity=0.020 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeC---hhHHHHHHhhCCCCCceEEeecccccc-----cCCccccccCCCCC-C----ch
Q 025067 98 ETVAQEAVSLCSDSDSRVACIAC---PTLYAYLKKIRPEVSPKILEYDMRFEQ-----YGSDFAFYDYNQPQ-D----LP 164 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~Iaclst---PSly~~lk~~~~~~~~~LLEyD~RF~~-----~g~~FvfYDyn~P~-~----lp 164 (258)
+.|+.-.+-... +.+||++||. =++-+-||+ +. ++.+.|+|..-=. ++. +.- -++.|- + +.
T Consensus 60 EmLvHppl~~h~-~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~-~~~-~~~DpRv~l~~~~~ 133 (262)
T PRK00536 60 ELLAHMGGCTKK-ELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPH-FHE-VKNNKNFTHAKQLL 133 (262)
T ss_pred HHHHHHHHhhCC-CCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHH-HHH-hhcCCCEEEeehhh
Confidence 445555544444 6789999996 577777876 43 9999999975321 121 110 122332 1 11
Q ss_pred hhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 165 LELKHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 165 ~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
+.-.++||+||+|-.|-. +-+ +.++..+++
T Consensus 134 ~~~~~~fDVIIvDs~~~~----~fy-~~~~~~L~~ 163 (262)
T PRK00536 134 DLDIKKYDLIICLQEPDI----HKI-DGLKRMLKE 163 (262)
T ss_pred hccCCcCCEEEEcCCCCh----HHH-HHHHHhcCC
Confidence 111367999999954432 223 345555665
No 104
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=40.25 E-value=89 Score=29.32 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=25.2
Q ss_pred CccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 150 SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 150 ~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
.++.+++++.+..|.+.+..+..+||+.||+..
T Consensus 167 ~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~ 199 (401)
T PRK00854 167 PGFRVVPFGDAEALEAAITPNTVAFLVEPIQGE 199 (401)
T ss_pred CCeEEeCCCCHHHHHHHhCCCeEEEEEccccCC
Confidence 357788888877777666555679999999974
No 105
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=40.05 E-value=13 Score=36.07 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=21.9
Q ss_pred ccccccCCCCCCchhhhccCccEEEECCCCCCHH
Q 025067 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE 184 (258)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee 184 (258)
.|+.=|-..-+.++.--.-.+|+||+|||.-+..
T Consensus 165 sF~~gDv~~~~qll~~H~llpdlIIiDPPW~NKS 198 (366)
T KOG2356|consen 165 SFHVGDVKDIEQLLRAHDLLPDLIIIDPPWFNKS 198 (366)
T ss_pred ceecccHHHHHHHhHHHhhcCCeEEeCCCCCCcc
Confidence 5666565544445532233469999999999864
No 106
>PLN02366 spermidine synthase
Probab=39.00 E-value=1.1e+02 Score=29.01 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=22.6
Q ss_pred CCCeEEEEeChh--HHHHHHhhCCC-CCceEEeeccc
Q 025067 111 SDSRVACIACPT--LYAYLKKIRPE-VSPKILEYDMR 144 (258)
Q Consensus 111 ~~~~IaclstPS--ly~~lk~~~~~-~~~~LLEyD~R 144 (258)
+..+|++||+=. +-..+.+ .|+ .++.+.|+|..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk-~~~v~~V~~VEiD~~ 126 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIAR-HSSVEQIDICEIDKM 126 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCCCeEEEEECCHH
Confidence 578999999853 2233333 354 57999999974
No 107
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=38.42 E-value=73 Score=28.00 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=40.9
Q ss_pred ccCccEEEEC---CCCCCHHHHHHHHHHHHHhcCC-CCCcEEEechHHHHHHHHHHhCCcccceeecCC
Q 025067 168 KHAFSVVVVD---PPYLSKECLEKVSETVSFLARP-GDSKLLLLTGEVQKERAAELLGLRPCGFRPQHS 232 (258)
Q Consensus 168 k~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~-~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~ 232 (258)
...+|+||+| |=..+-|+.+ .|.+. ...+|++.|......++.+.+..-...|.++..
T Consensus 44 ~~~pdvvl~Dl~mP~~~G~e~~~-------~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~ 105 (211)
T COG2197 44 ELKPDVVLLDLSMPGMDGLEALK-------QLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDA 105 (211)
T ss_pred hcCCCEEEEcCCCCCCChHHHHH-------HHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCC
Confidence 4668899998 5545555433 33321 234899999999999999999777777877764
No 108
>PTZ00146 fibrillarin; Provisional
Probab=38.31 E-value=2.1e+02 Score=27.30 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhhcC----CCCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeecccc----ccc----CC-ccccccCC
Q 025067 95 VTAETVAQEAVSLCS----DSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRF----EQY----GS-DFAFYDYN 158 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~----~~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~RF----~~~----g~-~FvfYDyn 158 (258)
..-..||..|+.... .++.+|+-|+|=+=+..+ .+. .+.-.|+-+|+..|- ... .. .++.-|.+
T Consensus 112 p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~ 191 (293)
T PTZ00146 112 PFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR 191 (293)
T ss_pred CcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 334456666644432 257899999987755443 233 234579999988652 111 11 46666776
Q ss_pred CCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 159 QPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 159 ~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
.|..++. +..++|+|++|=... +-...+...++.++|+ +..+++
T Consensus 192 ~p~~y~~-~~~~vDvV~~Dva~p--dq~~il~~na~r~LKp-GG~~vI 235 (293)
T PTZ00146 192 YPQKYRM-LVPMVDVIFADVAQP--DQARIVALNAQYFLKN-GGHFII 235 (293)
T ss_pred Chhhhhc-ccCCCCEEEEeCCCc--chHHHHHHHHHHhccC-CCEEEE
Confidence 6653332 224799999998643 2234555567778887 445554
No 109
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=38.01 E-value=48 Score=26.88 Aligned_cols=14 Identities=7% Similarity=0.233 Sum_probs=9.5
Q ss_pred CCCceEEeeccccc
Q 025067 133 EVSPKILEYDMRFE 146 (258)
Q Consensus 133 ~~~~~LLEyD~RF~ 146 (258)
+.+++|+|.|.+..
T Consensus 28 g~~vllvD~D~~~~ 41 (179)
T cd02036 28 GYKVVLIDADLGLR 41 (179)
T ss_pred CCeEEEEeCCCCCC
Confidence 45777777777654
No 110
>PRK05939 hypothetical protein; Provisional
Probab=36.79 E-value=1.2e+02 Score=29.36 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=51.6
Q ss_pred cccCh---hHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHh----h-CCCCCceEEeecc--------cccccCCccc
Q 025067 90 FWYDA---VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK----I-RPEVSPKILEYDM--------RFEQYGSDFA 153 (258)
Q Consensus 90 FWYsd---~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~----~-~~~~~~~LLEyD~--------RF~~~g~~Fv 153 (258)
|.|+. .|.+.|.+.+.+.-+ .. .+|.++|-..+|.. . .|+.++++.+..- ....+|-+.+
T Consensus 39 ~~Y~r~g~p~~~~lE~~la~leg---~~-~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~ 114 (397)
T PRK05939 39 FTYARQGTPTTAALEAKITKMEG---GV-GTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVT 114 (397)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhC---CC-eEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEE
Confidence 77776 889999999998843 22 23444444444432 2 4566777765431 1223454677
Q ss_pred cccCCCCCCchhhhccCccEEEECCC
Q 025067 154 FYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
++|...++.|...+.....+|++.-|
T Consensus 115 ~v~~~d~e~l~~~l~~~tklV~vesp 140 (397)
T PRK05939 115 MVDATDVQNVAAAIRPNTRMVFVETI 140 (397)
T ss_pred EECCCCHHHHHHhCCCCCeEEEEECC
Confidence 88876666666666555666666553
No 111
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=36.78 E-value=17 Score=33.24 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=41.5
Q ss_pred cccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChh------HHHHHHh---hCCCCCceEEeecccccc-------
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPT------LYAYLKK---IRPEVSPKILEYDMRFEQ------- 147 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPS------ly~~lk~---~~~~~~~~LLEyD~RF~~------- 147 (258)
..+..||+ ++..+..++-.++.. . .+.+|+=-||=| ++..+++ .....+++-.|+|..-..
T Consensus 22 ~k~~G~~~-TP~~i~~l~~~~~~~-~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 22 RKKLGQFY-TPREIVDLMVKLLNP-K-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp TTSCGGC----HHHHHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred ccccceee-hHHHHHHHHHhhhhc-c-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 34556774 554444444444332 1 445777655543 2223321 124567888899876432
Q ss_pred -cCCc-----cccccCCCCCCchhhh-ccCccEEEECCCCCCH
Q 025067 148 -YGSD-----FAFYDYNQPQDLPLEL-KHAFSVVVVDPPYLSK 183 (258)
Q Consensus 148 -~g~~-----FvfYDyn~P~~lp~~l-k~~fD~Vv~DPPFlse 183 (258)
.|.+ ...-| ...-+... ...||+||..|||+..
T Consensus 99 l~~~~~~~~~i~~~d---~l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 99 LHGIDNSNINIIQGD---SLENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HTTHHCBGCEEEES----TTTSHSCTST--EEEEEEE--CTCE
T ss_pred hhccccccccccccc---cccccccccccccccccCCCCcccc
Confidence 1211 11222 11111111 3579999999999977
No 112
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=35.49 E-value=64 Score=30.37 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=30.6
Q ss_pred cCc-cEEEECCCCCCH----------------HHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAF-SVVVVDPPYLSK----------------ECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~f-D~Vv~DPPFlse----------------ec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
.+- |+|-+||||... +=+.-+|+.++.|....+..++.|.+ +.+...+++
T Consensus 172 ~~~~dfvY~DPPY~~~s~t~~f~~Y~~~~f~~~~~~~La~~~~~l~~~~~i~~~~sn~--~~~~~~~ly 238 (274)
T COG0338 172 DSGDDFVYCDPPYLPLSATSNFTAYGGNGFTEDQHLRLAEVLKELEGKRGISVLDSNS--DTEETRELY 238 (274)
T ss_pred cCCCcEEEeCCCCCccccccccccccCCCCChHHHHHHHHHHHhccccceEEEecCcc--chHHHHHHH
Confidence 345 799999999863 11344677777775553334555555 444555555
No 113
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=34.64 E-value=47 Score=28.24 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhhc-------CCCCCeEEEEeC----hhHHHHHHhhCCCCCceEEeecccccc------------c-CC
Q 025067 95 VTAETVAQEAVSLC-------SDSDSRVACIAC----PTLYAYLKKIRPEVSPKILEYDMRFEQ------------Y-GS 150 (258)
Q Consensus 95 ~Ta~~La~~l~~~a-------~~~~~~Iaclst----PSly~~lk~~~~~~~~~LLEyD~RF~~------------~-g~ 150 (258)
+.+..|++.+.+.. ...+.+|+=||| |++..+.. ....++++=|++. --. . +.
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~--~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL--FGAARVVLTDYNE-VLELLRRNIELNGSLLDGR 98 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc--cCCceEEEeccch-hhHHHHHHHHhcccccccc
Confidence 56677777777742 114567766654 77776665 2345788888775 100 0 11
Q ss_pred -ccccccCCCCCCchhhh-ccCcc-EEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHH
Q 025067 151 -DFAFYDYNQPQDLPLEL-KHAFS-VVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQ 212 (258)
Q Consensus 151 -~FvfYDyn~P~~lp~~l-k~~fD-~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~m 212 (258)
.+.-.|..++.. +..+ .+.|| ||-+|==|- +++.+.+..|++.|+++. .+++++...+.
T Consensus 99 v~v~~L~Wg~~~~-~~~~~~~~~D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~-~~vl~~~~~R~ 160 (173)
T PF10294_consen 99 VSVRPLDWGDELD-SDLLEPHSFDVILASDVLYD-EELFEPLVRTLKRLLKPN-GKVLLAYKRRR 160 (173)
T ss_dssp -EEEE--TTS-HH-HHHHS-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT--TTEEEEEE-S-
T ss_pred ccCcEEEecCccc-ccccccccCCEEEEecccch-HHHHHHHHHHHHHHhCCC-CEEEEEeCEec
Confidence 445566655421 2333 36799 555677775 577899999999999984 45888776553
No 114
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=33.65 E-value=60 Score=31.13 Aligned_cols=124 Identities=17% Similarity=0.220 Sum_probs=63.1
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEe-Ch---hHHHHHHhhCCCCCceEEeecc-cccc-------cCC-c--ccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIA-CP---TLYAYLKKIRPEVSPKILEYDM-RFEQ-------YGS-D--FAF 154 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~Iacls-tP---Sly~~lk~~~~~~~~~LLEyD~-RF~~-------~g~-~--Fvf 154 (258)
+||-.+-+..|+-.++.-- ++.+|+=+| +| |.|-+-.-...+..++-+|.|. |-.. .|- + -+.
T Consensus 137 ~~~vQd~sS~l~a~~L~p~--pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~ 214 (355)
T COG0144 137 LIYVQDEASQLPALVLDPK--PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVN 214 (355)
T ss_pred EEEEcCHHHHHHHHHcCCC--CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEe
Confidence 3444455555555555542 456666444 33 3333322112234468888885 3332 231 2 334
Q ss_pred ccCCCCCCchhhhc--cCccEEEECCCCCCHHHHHH-----------------------HHHHHHHhcCCCCCcEEEec-
Q 025067 155 YDYNQPQDLPLELK--HAFSVVVVDPPYLSKECLEK-----------------------VSETVSFLARPGDSKLLLLT- 208 (258)
Q Consensus 155 YDyn~P~~lp~~lk--~~fD~Vv~DPPFlseec~eK-----------------------~A~Tir~L~k~~~~kiil~T- 208 (258)
.|-.. ++.... ++||.|++|||=-+.-.+.| +..++++| |+ ++.|+-+|
T Consensus 215 ~d~~~---~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l-k~-GG~LVYSTC 289 (355)
T COG0144 215 KDARR---LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL-KP-GGVLVYSTC 289 (355)
T ss_pred ccccc---ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEEcc
Confidence 44321 122221 25999999999766554422 22223333 44 45565433
Q ss_pred ---hHHHHHHHHHHh
Q 025067 209 ---GEVQKERAAELL 220 (258)
Q Consensus 209 ---g~~me~~i~kll 220 (258)
.+++|..+...|
T Consensus 290 S~~~eENE~vV~~~L 304 (355)
T COG0144 290 SLTPEENEEVVERFL 304 (355)
T ss_pred CCchhcCHHHHHHHH
Confidence 488888888777
No 115
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=32.92 E-value=2e+02 Score=26.92 Aligned_cols=49 Identities=8% Similarity=0.090 Sum_probs=27.6
Q ss_pred ccccccCCCCCCchhhhccCccEEEECCCCCCHHHH---HHHHHHHHHhcCC
Q 025067 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECL---EKVSETVSFLARP 199 (258)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~---eK~A~Tir~L~k~ 199 (258)
++.++.++.+..+...+.....+||++||...--++ ..+-+.++.|.+.
T Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~ 215 (398)
T PRK03244 164 GVEHVPYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDR 215 (398)
T ss_pred CceEeCCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHH
Confidence 455566665555555555566799999996432221 1223445556654
No 116
>PRK04266 fibrillarin; Provisional
Probab=32.86 E-value=3.6e+02 Score=24.13 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccc----ccc----cCC-ccccccCCCCCCc
Q 025067 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMR----FEQ----YGS-DFAFYDYNQPQDL 163 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~R----F~~----~g~-~FvfYDyn~P~~l 163 (258)
+.+..|+..+......++.+|+.+||=+=+.. |.+..+...++-+|.+.. +.. ... .++.=|...|..
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~- 134 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPER- 134 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcch-
Confidence 44444444331122225789999998764433 334344457999999862 211 111 233335444421
Q ss_pred hhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
...+..+||+|+.|=+.-.. ...+-..+..++|+ ++++++
T Consensus 135 ~~~l~~~~D~i~~d~~~p~~--~~~~L~~~~r~LKp-GG~lvI 174 (226)
T PRK04266 135 YAHVVEKVDVIYQDVAQPNQ--AEIAIDNAEFFLKD-GGYLLL 174 (226)
T ss_pred hhhccccCCEEEECCCChhH--HHHHHHHHHHhcCC-CcEEEE
Confidence 11234569999998653111 12223345555677 567776
No 117
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=32.66 E-value=1.6e+02 Score=26.09 Aligned_cols=91 Identities=19% Similarity=0.111 Sum_probs=54.6
Q ss_pred CCCeEEEEeChh--HHHHHHhhCCCCCceEEeeccccccc----CCccccccCCCCCCchhhhccCccEEEECCCCCCHH
Q 025067 111 SDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQY----GSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE 184 (258)
Q Consensus 111 ~~~~IaclstPS--ly~~lk~~~~~~~~~LLEyD~RF~~~----g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee 184 (258)
++.+|+=|||=+ +-..|.+..|+.+++.+|+....-.. +-+|+.-|... ++ ..++||+|++...+-.-.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~---~~--~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRD---WK--PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhh---CC--CCCCceEEEEehhhhhCC
Confidence 467888887744 33345555677789999998766433 12566666532 21 136899999988753311
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEe
Q 025067 185 CLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 185 c~eK~A~Tir~L~k~~~~kiil~ 207 (258)
-..++..-+..++++ ++++++.
T Consensus 104 d~~~~l~~~~~~Lkp-gG~l~~~ 125 (255)
T PRK14103 104 EHADLLVRWVDELAP-GSWIAVQ 125 (255)
T ss_pred CHHHHHHHHHHhCCC-CcEEEEE
Confidence 134444555556676 4566654
No 118
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=32.60 E-value=34 Score=32.53 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=32.8
Q ss_pred CccccccCCCCCCchhhhccCccEEEECCCCCCHHHH---HHHHHHHHHhcCCC
Q 025067 150 SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECL---EKVSETVSFLARPG 200 (258)
Q Consensus 150 ~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~---eK~A~Tir~L~k~~ 200 (258)
..+.++.||.+..+.+.+....-.||++|++..-.++ ..+-+.++.|.+..
T Consensus 159 ~~~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~ 212 (397)
T TIGR03246 159 GGIKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRH 212 (397)
T ss_pred CceEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 3566778887777776676567799999999753322 23344455666553
No 119
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=32.30 E-value=3.1e+02 Score=23.52 Aligned_cols=90 Identities=9% Similarity=0.101 Sum_probs=51.8
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccC--C-ccccccCCCCCCchhhhccCccEEEECCC
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYG--S-DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
+..+|+-|||=+=...+.-...+.+++-+|+..-- +.-+ . ++..-|.... .+.++||+|++=-.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~I~~~~~ 104 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-----TFDGEYDFILSTVV 104 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-----CcCCCcCEEEEecc
Confidence 45799999985544433211124578888886421 1111 1 2333444321 12467998776443
Q ss_pred --CCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 180 --YLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 180 --Flseec~eK~A~Tir~L~k~~~~kiil 206 (258)
|+..+....+...+.-++++ ++++++
T Consensus 105 ~~~~~~~~~~~~l~~i~~~Lkp-gG~~~~ 132 (197)
T PRK11207 105 LMFLEAKTIPGLIANMQRCTKP-GGYNLI 132 (197)
T ss_pred hhhCCHHHHHHHHHHHHHHcCC-CcEEEE
Confidence 45666677788888888888 556444
No 120
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.22 E-value=91 Score=31.04 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=44.7
Q ss_pred ccccCCCCCCchhhhc--cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcE--EEechHHHHHHHHHHh--C-----
Q 025067 153 AFYDYNQPQDLPLELK--HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKL--LLLTGEVQKERAAELL--G----- 221 (258)
Q Consensus 153 vfYDyn~P~~lp~~lk--~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~ki--il~Tg~~me~~i~kll--~----- 221 (258)
++|.-..-+++..... ..+|.||+|||=-+-+ + .+++.|++....|| |.|-+.-+..-+..|. |
T Consensus 343 ~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--~---~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i~~ 417 (432)
T COG2265 343 VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--R---EVLKQLAKLKPKRIVYVSCNPATLARDLAILASTGYEIER 417 (432)
T ss_pred EEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC--H---HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhCCeEEEE
Confidence 5555444444444442 4689999999988863 2 34566665433355 6788877776666554 3
Q ss_pred Ccccceeec
Q 025067 222 LRPCGFRPQ 230 (258)
Q Consensus 222 ~~~~~F~P~ 230 (258)
+.+.|..|.
T Consensus 418 v~~~DmFP~ 426 (432)
T COG2265 418 VQPFDMFPH 426 (432)
T ss_pred EEEeccCCC
Confidence 555565554
No 121
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=32.14 E-value=1.3e+02 Score=26.58 Aligned_cols=118 Identities=12% Similarity=0.096 Sum_probs=64.6
Q ss_pred cccccccccChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHH--HHHhhCCCCCceEEeeccccccc-----CC-cccc
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----GS-DFAF 154 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~-~~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF~~~-----g~-~Fvf 154 (258)
+|+-++|=-........++.++.... .++.+|+=|||=+=.. .|.+..|..+++-+|++...-.. +. +|+.
T Consensus 3 ~w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~ 82 (258)
T PRK01683 3 DWNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE 82 (258)
T ss_pred CCCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE
Confidence 37766663222233335655555443 2467888888744333 34444566789999998643321 11 3433
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCCH-HHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSK-ECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlse-ec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
=|.... + ...+||+|++...|--- + ..++-..+..++++ ++++++.+
T Consensus 83 ~d~~~~---~--~~~~fD~v~~~~~l~~~~d-~~~~l~~~~~~Lkp-gG~~~~~~ 130 (258)
T PRK01683 83 ADIASW---Q--PPQALDLIFANASLQWLPD-HLELFPRLVSLLAP-GGVLAVQM 130 (258)
T ss_pred Cchhcc---C--CCCCccEEEEccChhhCCC-HHHHHHHHHHhcCC-CcEEEEEC
Confidence 343321 1 12479999999886321 2 34444555556666 45676654
No 122
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=32.00 E-value=1.4e+02 Score=29.93 Aligned_cols=92 Identities=25% Similarity=0.488 Sum_probs=52.0
Q ss_pred CeEEEEeChhH------HHHHHhhCCCCCceEEeecccccccCC--ccccccCCCCCCch-----hhhccCccEEEECC-
Q 025067 113 SRVACIACPTL------YAYLKKIRPEVSPKILEYDMRFEQYGS--DFAFYDYNQPQDLP-----LELKHAFSVVVVDP- 178 (258)
Q Consensus 113 ~~IaclstPSl------y~~lk~~~~~~~~~LLEyD~RF~~~g~--~FvfYDyn~P~~lp-----~~lk~~fD~Vv~DP- 178 (258)
+-..||.+|+| |.+|+..+++.++.|| ||+ .+. ..|.-+- -.|+..||+||||=
T Consensus 144 G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L--------yg~S~~~f----r~plvVaTtHQLlrFk~aFD~liIDEV 211 (441)
T COG4098 144 GGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL--------YGDSDSYF----RAPLVVATTHQLLRFKQAFDLLIIDEV 211 (441)
T ss_pred CCeEEEecCcccchHHHHHHHHHhhccCCeeeE--------ecCCchhc----cccEEEEehHHHHHHHhhccEEEEecc
Confidence 44567899985 6666665555555553 332 121 1454333 12367799999995
Q ss_pred ---CCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 179 ---PYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 179 ---PFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
||-...-+ -.+++.-.|+.+..| ..|-..-.++-.+++
T Consensus 212 DAFP~~~d~~L---~~Av~~ark~~g~~I-ylTATp~k~l~r~~~ 252 (441)
T COG4098 212 DAFPFSDDQSL---QYAVKKARKKEGATI-YLTATPTKKLERKIL 252 (441)
T ss_pred ccccccCCHHH---HHHHHHhhcccCceE-EEecCChHHHHHHhh
Confidence 89877443 455666666544444 334334444445554
No 123
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=30.78 E-value=1e+02 Score=26.52 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=33.3
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCC-CCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARP-GDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~-~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
...+|+||+|--.-..+.++ .++.|.+. ...+||++|+......+.+.+..-..+|.++
T Consensus 48 ~~~pdlvllD~~mp~~~gle----~~~~l~~~~~~~~iivls~~~~~~~~~~al~~Ga~~yl~K 107 (225)
T PRK10046 48 RFKPGLILLDNYLPDGRGIN----LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIK 107 (225)
T ss_pred hcCCCEEEEeCCCCCCcHHH----HHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCccEEEEC
Confidence 35689999995444433332 22333221 1347888888777666766663334455444
No 124
>PLN02823 spermine synthase
Probab=30.64 E-value=1e+02 Score=29.60 Aligned_cols=49 Identities=8% Similarity=0.006 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccc
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ 147 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~ 147 (258)
+.|+....-... ..++|++||.=.-... +.+..+..++.+.|+|..--.
T Consensus 91 E~l~h~~l~~~~-~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~ 141 (336)
T PLN02823 91 ESLVHPALLHHP-NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVD 141 (336)
T ss_pred HHHHhHHHhhCC-CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHH
Confidence 344444333333 4579999998644322 222223457999999975443
No 125
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.54 E-value=1.2e+02 Score=28.16 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=69.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHH
Q 025067 45 LSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLY 124 (258)
Q Consensus 45 LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly 124 (258)
-+++.-+.|-+|++++..+...|+ -+..+-|-|..-- |-++..+.++..|...+. .+++|-+|..=.=
T Consensus 11 ~~p~~t~~fl~Fl~~~a~~ad~ly--------ilGDifd~w~g~~--~~~~~~~~V~~~l~~~a~-~G~~v~~i~GN~D- 78 (237)
T COG2908 11 KRPALTAFFLDFLREEAAQADALY--------ILGDIFDGWIGDD--EPPQLHRQVAQKLLRLAR-KGTRVYYIHGNHD- 78 (237)
T ss_pred CCcHHHHHHHHHHHhccccCcEEE--------EechhhhhhhcCC--cccHHHHHHHHHHHHHHh-cCCeEEEecCchH-
Confidence 457777889999998877544442 4567778888877 447888999999999988 8899999888776
Q ss_pred HHHHhh----CC----CCCceEEeecccccc--cCCcccc
Q 025067 125 AYLKKI----RP----EVSPKILEYDMRFEQ--YGSDFAF 154 (258)
Q Consensus 125 ~~lk~~----~~----~~~~~LLEyD~RF~~--~g~~Fvf 154 (258)
+.|.+. .. ..+..++++|.|.-. .|+.|+-
T Consensus 79 fll~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t 118 (237)
T COG2908 79 FLLGKRFAQEAGGMTLLPDPIVLDLYGKRILLAHGDTFCT 118 (237)
T ss_pred HHHHHHHHhhcCceEEcCcceeeeecCcEEEEEeCCcccc
Confidence 334442 11 235677787776654 3877763
No 126
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=29.39 E-value=33 Score=27.04 Aligned_cols=15 Identities=40% Similarity=0.908 Sum_probs=13.1
Q ss_pred CccEEEECCCCCCHH
Q 025067 170 AFSVVVVDPPYLSKE 184 (258)
Q Consensus 170 ~fD~Vv~DPPFlsee 184 (258)
+||+||--|||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 599999999999763
No 127
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=29.00 E-value=2.1e+02 Score=22.09 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=12.1
Q ss_pred CCCceEEeeccccc
Q 025067 133 EVSPKILEYDMRFE 146 (258)
Q Consensus 133 ~~~~~LLEyD~RF~ 146 (258)
+..++|+|.|.++.
T Consensus 29 ~~~~~l~d~d~~~~ 42 (106)
T cd03111 29 GRRVLLVDLDLQFG 42 (106)
T ss_pred CCcEEEEECCCCCC
Confidence 67899999999974
No 128
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=28.61 E-value=2.9e+02 Score=25.17 Aligned_cols=90 Identities=10% Similarity=0.172 Sum_probs=54.3
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC--CccccccCCCCCCchhhhccCccEEEECCC-
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG--SDFAFYDYNQPQDLPLELKHAFSVVVVDPP- 179 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g--~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP- 179 (258)
..++|+=|||=+=...+.-...+.+++.+|++...- ..+ -++..+|.+.+. +.++||+|++=--
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-----~~~~fD~I~~~~vl 194 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-----IQEEYDFILSTVVL 194 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-----ccCCccEEEEcchh
Confidence 346899998766443322111346899999986531 112 156677776532 2578998887654
Q ss_pred -CCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 180 -YLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 180 -Flseec~eK~A~Tir~L~k~~~~kiil 206 (258)
|++.+-+..+...++.++++ ++.+++
T Consensus 195 ~~l~~~~~~~~l~~~~~~Lkp-gG~~l~ 221 (287)
T PRK12335 195 MFLNRERIPAIIKNMQEHTNP-GGYNLI 221 (287)
T ss_pred hhCCHHHHHHHHHHHHHhcCC-CcEEEE
Confidence 44555566677777777777 345433
No 129
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=28.56 E-value=53 Score=30.24 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=17.2
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
+.||+||+|=| ++.+|+|+|.-|
T Consensus 111 ~~yD~iVvDta--------PtghtLrlL~lP 133 (284)
T TIGR00345 111 NEFDVVIFDTA--------PTGHTLRLLQLP 133 (284)
T ss_pred ccCCEEEECCC--------ChHHHHHHHhhH
Confidence 57999999954 345777777766
No 130
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=28.40 E-value=98 Score=28.42 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=55.3
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHh---hCCCCCceEEeecccccccCC-ccccccCC-------
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK---IRPEVSPKILEYDMRFEQYGS-DFAFYDYN------- 158 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~---~~~~~~~~LLEyD~RF~~~g~-~FvfYDyn------- 158 (258)
-+=+.++...|...+... +.++|+=|||=+=|-+|.= ..++.+++-+|.|..+..++. .|-...+.
T Consensus 61 ~~~~~~~g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~ 137 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE 137 (247)
T ss_pred CccCHHHHHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 345678888887776655 5689999999888887632 123568999999987765532 23223221
Q ss_pred -CCCCchhhh------ccCccEEEECC
Q 025067 159 -QPQDLPLEL------KHAFSVVVVDP 178 (258)
Q Consensus 159 -~P~~lp~~l------k~~fD~Vv~DP 178 (258)
...++...| .++||+|++|=
T Consensus 138 G~a~e~L~~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 138 GPALPVLDQMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred ccHHHHHHHHHhccccCCcccEEEecC
Confidence 122222233 36899999994
No 131
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=28.13 E-value=88 Score=29.86 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=22.0
Q ss_pred CccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcE--EEechHHHHHHHHHH
Q 025067 170 AFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKL--LLLTGEVQKERAAEL 219 (258)
Q Consensus 170 ~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~ki--il~Tg~~me~~i~kl 219 (258)
.+|+||+|||=-+-+ +++...++ +. .+| |.|-+.-+..=+..+
T Consensus 278 ~~d~vilDPPR~G~~--~~~~~~~~---~~--~~ivYvSCnP~tlaRDl~~L 322 (352)
T PF05958_consen 278 KFDAVILDPPRAGLD--EKVIELIK---KL--KRIVYVSCNPATLARDLKIL 322 (352)
T ss_dssp TESEEEE---TT-SC--HHHHHHHH---HS--SEEEEEES-HHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCch--HHHHHHHh---cC--CeEEEEECCHHHHHHHHHHH
Confidence 589999999988742 33333333 33 155 668776665555544
No 132
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=27.21 E-value=2.4e+02 Score=25.04 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=51.4
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC--C--ccccccCCCCCCchhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
...+|+=|||=+=+..+.-...+.+++.+|++...- ..| . .|+.-|..+ ++....++||+|++.-
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~---l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD---IAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH---HhhhcCCCCCEEEehh
Confidence 457888888877766543222346899999985432 222 1 344444432 3333457899999765
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 179 PYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 179 PFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.+-.-+-..++-..+..++++ ++.++++
T Consensus 121 vl~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 148 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRP-GGALSLM 148 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCC-CeEEEEE
Confidence 542110012334445556666 4566554
No 133
>PRK06234 methionine gamma-lyase; Provisional
Probab=26.64 E-value=1e+02 Score=29.65 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=50.1
Q ss_pred ccccC---hhHHHHHHHHHHhhcCCCCCeEEEE--eChhHHHHHHhh-CCCCCceEEeec--ccc-------cccCCccc
Q 025067 89 QFWYD---AVTAETVAQEAVSLCSDSDSRVACI--ACPTLYAYLKKI-RPEVSPKILEYD--MRF-------EQYGSDFA 153 (258)
Q Consensus 89 QFWYs---d~Ta~~La~~l~~~a~~~~~~Iacl--stPSly~~lk~~-~~~~~~~LLEyD--~RF-------~~~g~~Fv 153 (258)
-|+|+ +.|...|-+.+.+... . ..+.++ |+-.++..+... .|+..+++-+.. .-| ..+|-+.+
T Consensus 55 ~~~Y~r~~~p~~~~Le~~iA~~~g-~-~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~ 132 (400)
T PRK06234 55 GYIYSRLGNPTSTEVENKLALLEG-G-EAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVT 132 (400)
T ss_pred CCcccCCCCccHHHHHHHHHHHhC-C-CcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEE
Confidence 46688 7888999998888854 2 233333 222333333322 455566655421 111 22454677
Q ss_pred cccCCCCCCchhhhccCccEEEECCC
Q 025067 154 FYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
++|...++++.+.+....++|++.=|
T Consensus 133 ~vd~~d~e~l~~~i~~~tklI~iesP 158 (400)
T PRK06234 133 FVDTSNLEEVRNALKANTKVVYLETP 158 (400)
T ss_pred EECCCCHHHHHHHhccCCeEEEEECC
Confidence 88877776666666555566665544
No 134
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=26.13 E-value=3.5e+02 Score=21.76 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=35.5
Q ss_pred CCCCceEEeecccccccCCccccccCCCCCC--chhhhccCcc--EEEECCCCCCHHHHHHHHHHHHHhcC
Q 025067 132 PEVSPKILEYDMRFEQYGSDFAFYDYNQPQD--LPLELKHAFS--VVVVDPPYLSKECLEKVSETVSFLAR 198 (258)
Q Consensus 132 ~~~~~~LLEyD~RF~~~g~~FvfYDyn~P~~--lp~~lk~~fD--~Vv~DPPFlseec~eK~A~Tir~L~k 198 (258)
.+..+.|+|.|..-..+.-+|+..|..-... ...-++. .| +|+++|-..+ +..+..+++.|.+
T Consensus 27 ~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~~~~~~~l~~-aD~vviv~~~~~~s---~~~~~~~l~~l~~ 93 (139)
T cd02038 27 LGKRVLLLDADLGLANLDYDYIIIDTGAGISDNVLDFFLA-ADEVIVVTTPEPTS---ITDAYALIKKLAK 93 (139)
T ss_pred CCCcEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHh-CCeEEEEcCCChhH---HHHHHHHHHHHHH
Confidence 4568999999975555533677777652211 1122333 34 6777775554 3445555665543
No 135
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=25.62 E-value=2.5e+02 Score=23.56 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeChhHHH--HHHhhCCCCCceEEeeccccccc-----CC--ccccccCCCCCCchhh
Q 025067 96 TAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQY-----GS--DFAFYDYNQPQDLPLE 166 (258)
Q Consensus 96 Ta~~La~~l~~~a~~~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF~~~-----g~--~FvfYDyn~P~~lp~~ 166 (258)
.+..|++.+.........+|+=|||-+=.. .+.+..+..+++..|.+..+... +. .|+.-|... +| .
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~---~~-~ 94 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEK---LP-L 94 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhh---CC-C
Confidence 334444444433111346888888865433 34444566678999988655322 11 344455432 11 1
Q ss_pred hccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 167 LKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 167 lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
..++||+||+.=.+-...-..++-..++.++++ ++.+++.+
T Consensus 95 ~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~-~G~l~~~~ 135 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWCDDLSQALSELARVLKP-GGLLAFST 135 (240)
T ss_pred CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCC-CcEEEEEe
Confidence 136799999875443322235556666777777 45666544
No 136
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=25.26 E-value=5.2e+02 Score=23.47 Aligned_cols=93 Identities=19% Similarity=0.073 Sum_probs=54.9
Q ss_pred cccccccc-cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccccC------C--
Q 025067 82 SEDWRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYG------S-- 150 (258)
Q Consensus 82 ~EDwqlSQ-FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~g------~-- 150 (258)
.-...+.| |--+...++.+++.+.-. ++.+|+=|||-+=... |.+.. .+++.+|+|.++.... +
T Consensus 15 ~~~k~~gq~fl~~~~i~~~i~~~l~~~---~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v 89 (272)
T PRK00274 15 RAKKSLGQNFLIDENILDKIVDAAGPQ---PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNL 89 (272)
T ss_pred CCCcccCcCcCCCHHHHHHHHHhcCCC---CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCce
Confidence 44566788 444566666666655221 5678988988854433 44433 3899999999876531 1
Q ss_pred ccccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
+++.=|+.+- .++. +. ++.||.-|||.--
T Consensus 90 ~~i~~D~~~~-~~~~-~~--~~~vv~NlPY~is 118 (272)
T PRK00274 90 TIIEGDALKV-DLSE-LQ--PLKVVANLPYNIT 118 (272)
T ss_pred EEEEChhhcC-CHHH-cC--cceEEEeCCccch
Confidence 2333333221 1111 11 5899999999753
No 137
>PLN03029 type-a response regulator protein; Provisional
Probab=25.26 E-value=90 Score=27.37 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=32.8
Q ss_pred ccCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+.+|+||+| |-..+.+.+.++ +.........||++|+......+.+.+..-..+|..+
T Consensus 70 ~~~~dlVllD~~mp~~~G~e~l~~i----r~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~K 131 (222)
T PLN03029 70 EVEVNLIITDYCMPGMTGYDLLKKI----KESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLK 131 (222)
T ss_pred cccCCEEEEcCCCCCCCHHHHHHHH----HhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEEC
Confidence 4568899998 444444433222 2211111346888888777666666664444555544
No 138
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=25.17 E-value=88 Score=29.42 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=49.8
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHh----h-CCCCCceEEee--cc------c-ccccCCccccccC
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK----I-RPEVSPKILEY--DM------R-FEQYGSDFAFYDY 157 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~----~-~~~~~~~LLEy--D~------R-F~~~g~~FvfYDy 157 (258)
|...|...|.+.+.+..+ . . .++.+||-..++.- . .++.++++-.. -. + ...+|-+..++|.
T Consensus 37 ~~~p~~~~le~~la~l~g-~-~--~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 37 IGNPTVDALEKKLAALEG-G-E--AALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred CCChhHHHHHHHHHHHHC-C-C--CEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCC
Confidence 357888888888888743 2 2 33445555555442 1 34444444331 11 0 1123446778888
Q ss_pred CCCCCchhhhccCccEEEECCCC
Q 025067 158 NQPQDLPLELKHAFSVVVVDPPY 180 (258)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPF 180 (258)
+.+..+.+.++....+|+++.|.
T Consensus 113 ~d~~~l~~~i~~~~~~v~~e~~~ 135 (369)
T cd00614 113 DDPEALEAAIKPETKLVYVESPT 135 (369)
T ss_pred CCHHHHHHhcCCCCeEEEEECCC
Confidence 77666766666566788888776
No 139
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=25.08 E-value=38 Score=29.63 Aligned_cols=14 Identities=43% Similarity=0.752 Sum_probs=8.5
Q ss_pred cCccEEEECCCCCC
Q 025067 169 HAFSVVVVDPPYLS 182 (258)
Q Consensus 169 ~~fD~Vv~DPPFls 182 (258)
.+-|+|-+||||..
T Consensus 176 ~~~d~vYlDPPY~~ 189 (260)
T PF02086_consen 176 SPNDFVYLDPPYYS 189 (260)
T ss_dssp TTE-EEEE--S-TT
T ss_pred CCCeEEEEcCcccc
Confidence 45789999999998
No 140
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=25.03 E-value=4.6e+02 Score=22.77 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=62.5
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeeccccc--------ccC-CccccccCCCCCCchhhhccCccEEEECCC
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFE--------QYG-SDFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~--------~~g-~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
++.+|+=|||-+=+.++ ....+..+++.+|.+...- ..+ ++..+..-+ ..+++. .++||+|++.-
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d-~~~~~~--~~~fDlV~~~~- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR-AEEFGQ--EEKFDVVTSRA- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc-HhhCCC--CCCccEEEEcc-
Confidence 36789999998877554 3335677999999986432 222 122222211 122332 46899999973
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHH---HHhCCccc
Q 025067 180 YLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAA---ELLGLRPC 225 (258)
Q Consensus 180 Flseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~---kll~~~~~ 225 (258)
+.. ++.+...+..++++ ++++++.-|......+. +.+|+..+
T Consensus 121 ~~~---~~~~l~~~~~~Lkp-GG~lv~~~~~~~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 121 VAS---LSDLVELCLPLLKP-GGRFLALKGRDPEEEIAELPKALGGKVE 165 (187)
T ss_pred ccC---HHHHHHHHHHhcCC-CeEEEEEeCCChHHHHHHHHHhcCceEe
Confidence 322 35556666666776 55777776654443333 44576643
No 141
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=24.86 E-value=64 Score=26.66 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=28.1
Q ss_pred CCCCceEEeecccccccCCccccccCCCCCC-chhhh----ccCccEEEEC-CCCCCH
Q 025067 132 PEVSPKILEYDMRFEQYGSDFAFYDYNQPQD-LPLEL----KHAFSVVVVD-PPYLSK 183 (258)
Q Consensus 132 ~~~~~~LLEyD~RF~~~g~~FvfYDyn~P~~-lp~~l----k~~fD~Vv~D-PPFlse 183 (258)
.+.+++|+|.|.|..... .. +.-..+.. +...+ ...||+||+| ||.++.
T Consensus 27 ~g~~vllvD~D~q~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~ 81 (169)
T cd02037 27 LGYKVGLLDADIYGPSIP--KM-WRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGD 81 (169)
T ss_pred cCCcEEEEeCCCCCCCch--HH-HhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcH
Confidence 467899999999875321 11 22111111 22222 2579999999 566554
No 142
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.83 E-value=92 Score=28.13 Aligned_cols=43 Identities=23% Similarity=0.479 Sum_probs=31.4
Q ss_pred hhhccCcc-EEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 165 LELKHAFS-VVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 165 ~~lk~~fD-~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.+..++|| ++.+|==|..+- -+.++.||+.|++|.+ +-|+..+
T Consensus 98 q~eq~tFDiIlaADClFfdE~-h~sLvdtIk~lL~p~g-~Al~fsP 141 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCLFFDEH-HESLVDTIKSLLRPSG-RALLFSP 141 (201)
T ss_pred HHhhCcccEEEeccchhHHHH-HHHHHHHHHHHhCccc-ceeEecC
Confidence 34467899 555688888874 5789999999999954 4455454
No 143
>KOG2098 consensus Predicted N6-adenine RNA methylase [RNA processing and modification]
Probab=24.80 E-value=40 Score=34.48 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=25.2
Q ss_pred ccCccEEEECCCC--------CCHHHHHHHHHHHHHhcCC----CCCcEEEechHHHH
Q 025067 168 KHAFSVVVVDPPY--------LSKECLEKVSETVSFLARP----GDSKLLLLTGEVQK 213 (258)
Q Consensus 168 k~~fD~Vv~DPPF--------lseec~eK~A~Tir~L~k~----~~~kiil~Tg~~me 213 (258)
-|+|-||++|||. ++-. -.-+|-|--+ +|-=.+|.||.-||
T Consensus 387 LGkFaVVmADPpWdIHMeLPYGTm~-----DdEmr~L~vp~LQddGlIFLWVTGRAmE 439 (591)
T KOG2098|consen 387 LGKFAVVMADPPWDIHMELPYGTMT-----DDEMRRLNVPVLQDDGLIFLWVTGRAME 439 (591)
T ss_pred eceeEEEeeCCCccceeecCccccc-----hHHhhcCCCcccccCcEEEEEEcchHHH
Confidence 4889999999975 3311 1113444333 13335889998887
No 144
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=24.52 E-value=98 Score=23.16 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=10.9
Q ss_pred CCCCceEEeeccc
Q 025067 132 PEVSPKILEYDMR 144 (258)
Q Consensus 132 ~~~~~~LLEyD~R 144 (258)
.+.+++++|.|..
T Consensus 27 ~~~~vl~~d~d~~ 39 (104)
T cd02042 27 RGKRVLLIDLDPQ 39 (104)
T ss_pred CCCcEEEEeCCCC
Confidence 4678999999987
No 145
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=24.47 E-value=46 Score=29.57 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=59.7
Q ss_pred ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh--CC-CCCceEEeecccccccCC-ccccccCC--------CC
Q 025067 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI--RP-EVSPKILEYDMRFEQYGS-DFAFYDYN--------QP 160 (258)
Q Consensus 93 sd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~--~~-~~~~~LLEyD~RF~~~g~-~FvfYDyn--------~P 160 (258)
+..+...|.-.+... ..++|+=|||=+=|.+|.=. .| +.+++-+|.|..+...+. .|-.+.+. ..
T Consensus 30 ~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 456666655444333 56899999999999987532 33 568999999988766542 23333321 12
Q ss_pred CCchhhh-----ccCccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 161 QDLPLEL-----KHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 161 ~~lp~~l-----k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
.++-..| .++||+|++|=.=.. ...-+-..+++|.+.
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K~~--y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADKRN--YLEYFEKALPLLRPG 148 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTGGG--HHHHHHHHHHHEEEE
T ss_pred HhhHHHHHhccCCCceeEEEEcccccc--hhhHHHHHhhhccCC
Confidence 2222233 257999999975332 233333445555443
No 146
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=24.44 E-value=1.1e+02 Score=27.94 Aligned_cols=18 Identities=33% Similarity=0.408 Sum_probs=11.3
Q ss_pred CCeEEEEeChhHHHHHHh
Q 025067 112 DSRVACIACPTLYAYLKK 129 (258)
Q Consensus 112 ~~~IaclstPSly~~lk~ 129 (258)
+-+|.|+.+|.+...|+.
T Consensus 133 g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 133 GISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCeEEEEEHHHHHHHHHH
Confidence 456666666666666664
No 147
>PLN03075 nicotianamine synthase; Provisional
Probab=24.21 E-value=5.8e+02 Score=24.31 Aligned_cols=99 Identities=20% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCCeEEEEeCh----hHHHHHHhhCCCCCceEEeeccc--------ccc---cCC--ccccccCCCCCCchhhhccCccE
Q 025067 111 SDSRVACIACP----TLYAYLKKIRPEVSPKILEYDMR--------FEQ---YGS--DFAFYDYNQPQDLPLELKHAFSV 173 (258)
Q Consensus 111 ~~~~IaclstP----Sly~~lk~~~~~~~~~LLEyD~R--------F~~---~g~--~FvfYDyn~P~~lp~~lk~~fD~ 173 (258)
..++|+.|||= |....+....|+..++-+|.|.. +.. ++. .|..=|..+. +.. .+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~---~~~-l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV---TES-LKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc---ccc-cCCcCE
Confidence 56899999998 34444444467778899999942 211 111 4555554331 212 357999
Q ss_pred EEECCCCC---CHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHH
Q 025067 174 VVVDPPYL---SKECLEKVSETVSFLARPGDSKLLLLTGEVQKERA 216 (258)
Q Consensus 174 Vv~DPPFl---seec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i 216 (258)
|+++ -+ ..+=-.++-.-+...+++ ++.+++=++.-|..++
T Consensus 199 VF~~--ALi~~dk~~k~~vL~~l~~~LkP-GG~Lvlr~~~G~r~~L 241 (296)
T PLN03075 199 VFLA--ALVGMDKEEKVKVIEHLGKHMAP-GALLMLRSAHGARAFL 241 (296)
T ss_pred EEEe--cccccccccHHHHHHHHHHhcCC-CcEEEEecccchHhhc
Confidence 9999 33 111134455555555666 5567776655555543
No 148
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=23.86 E-value=2.1e+02 Score=31.88 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=61.2
Q ss_pred CCeEEEEeChhHHHHHHhh----CCCCCceEEeecccc--c----cc-CCcc----ccccCCCCCCchhhh-ccCccEEE
Q 025067 112 DSRVACIACPTLYAYLKKI----RPEVSPKILEYDMRF--E----QY-GSDF----AFYDYNQPQDLPLEL-KHAFSVVV 175 (258)
Q Consensus 112 ~~~IaclstPSly~~lk~~----~~~~~~~LLEyD~RF--~----~~-g~~F----vfYDyn~P~~lp~~l-k~~fD~Vv 175 (258)
.+.+++|+-+|+-..+.+. .|...++++.-+.+= . .. .+.| +-|+.-.. -...| +..+++||
T Consensus 219 ~gp~LIVvP~SlL~nW~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~--e~~~L~k~~W~~VI 296 (1033)
T PLN03142 219 TGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIK--EKTALKRFSWRYII 296 (1033)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHH--HHHHhccCCCCEEE
Confidence 4678889999998887763 566677666544311 0 01 1111 22332110 01223 35689999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHH
Q 025067 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL 219 (258)
Q Consensus 176 ~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kl 219 (258)
+|=--.-.....+++++++.|... ..|++||.-+.+-+..+
T Consensus 297 vDEAHrIKN~~Sklskalr~L~a~---~RLLLTGTPlqNnl~EL 337 (1033)
T PLN03142 297 IDEAHRIKNENSLLSKTMRLFSTN---YRLLITGTPLQNNLHEL 337 (1033)
T ss_pred EcCccccCCHHHHHHHHHHHhhcC---cEEEEecCCCCCCHHHH
Confidence 998776444467889999988765 56788996655444433
No 149
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=23.83 E-value=1.8e+02 Score=24.53 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=32.1
Q ss_pred cCccEEEECCCCCCH---HHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSK---ECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse---ec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+|-..-.. +..+ +...++.. .+ ..+||+.|+......+.+.+..-...|-++
T Consensus 48 ~~~DlvllD~~l~~~~~~~g~~-~~~~l~~~-~~-~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K 109 (216)
T PRK10840 48 LDAHVLITDLSMPGDKYGDGIT-LIKYIKRH-FP-SLSIIVLTMNNNPAILSAVLDLDIEGIVLK 109 (216)
T ss_pred CCCCEEEEeCcCCCCCCCCHHH-HHHHHHHH-CC-CCcEEEEEecCCHHHHHHHHHCCCeEEEEC
Confidence 568999998544331 2222 22233322 12 357888887766666666664444445443
No 150
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=23.73 E-value=1.6e+02 Score=23.93 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=8.0
Q ss_pred cEEEechHHHHHHHHHHh
Q 025067 203 KLLLLTGEVQKERAAELL 220 (258)
Q Consensus 203 kiil~Tg~~me~~i~kll 220 (258)
++|+.|+......+.+.+
T Consensus 72 ~iivls~~~~~~~~~~~~ 89 (218)
T TIGR01387 72 PVLFLTARDSVADKVKGL 89 (218)
T ss_pred cEEEEEcCCCHHHHHHHH
Confidence 455555544444333333
No 151
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=23.03 E-value=3e+02 Score=23.32 Aligned_cols=112 Identities=12% Similarity=0.024 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccCC---ccccccCCCC
Q 025067 93 DAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYGS---DFAFYDYNQP 160 (258)
Q Consensus 93 sd~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g~---~FvfYDyn~P 160 (258)
+...+..+.+.+...-. ..+.+|+=|||-+=+....-.....++...|.+...- ..+. .|..-|.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--- 102 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV--- 102 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---
Confidence 44556667766664310 0356888888876443322111234588888875431 1111 1222221
Q ss_pred CCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 161 QDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.+++....++||+|++.-.+....-...+-..++.++++ ++.+++.+
T Consensus 103 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~-gG~l~i~~ 149 (224)
T TIGR01983 103 EDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKP-GGILFFST 149 (224)
T ss_pred HHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCC-CcEEEEEe
Confidence 122222246899998854333221122233333344455 45666655
No 152
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=22.89 E-value=4.3e+02 Score=24.25 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=21.0
Q ss_pred ccccccCCCCCCchhhhccCccEEEECCCCC
Q 025067 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL 181 (258)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl 181 (258)
++.+.++|.+..+.+.+.....+|++.|+..
T Consensus 151 ~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~ 181 (379)
T TIGR00707 151 GFSYAPYNDIESLKKAIDDETAAVIVEPIQG 181 (379)
T ss_pred CceeeCCCCHHHHHHHhhhCeeEEEEEcccc
Confidence 4556666666666666655567888898863
No 153
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=21.76 E-value=44 Score=36.22 Aligned_cols=15 Identities=47% Similarity=1.023 Sum_probs=12.7
Q ss_pred cCccEEEECCCCCCH
Q 025067 169 HAFSVVVVDPPYLSK 183 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (258)
-+||+||.||||--.
T Consensus 488 ekfd~IVtDPPY~Dd 502 (875)
T COG1743 488 EKFDVIVTDPPYYDD 502 (875)
T ss_pred ccCceeecCCCcccC
Confidence 579999999999654
No 154
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=21.75 E-value=2e+02 Score=23.11 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=31.2
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|..+...+..+ .++.|.. ..+||++|+....+.+.+.+..-..+|.++
T Consensus 46 ~~~dlvi~d~~~~~~~g~~----~~~~l~~--~~~vi~~s~~~~~~~~~~~~~~ga~~~i~k 101 (196)
T PRK10360 46 RGVQVCICDISMPDISGLE----LLSQLPK--GMATIMLSVHDSPALVEQALNAGARGFLSK 101 (196)
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHcc--CCCEEEEECCCCHHHHHHHHHcCCcEEEEC
Confidence 5688999987665443322 2333322 346888887666665555553333444433
No 155
>PF12237 PCIF1_WW: Phosphorylated CTD interacting factor 1 WW domain; InterPro: IPR022035 This domain is found in bacteria and eukaryotes, and is approximately 180 amino acids in length. It is the WW domain of PCIF1. PCIF1 interacts with phosphorylated RNA polymerase II carboxy-terminal domain (CTD). The WW domain of PCIF1 can directly and preferentially bind to the phosphorylated CTD compared to the unphosphorylated CTD. PCIF1 binds to the hyperphosphorylated RNAP II (RNAP IIO) in vitro and in vivo. Double immunofluorescence labeling in HeLa cells demonstrated that PCIF1 and endogenous RNAP IIO are co-localized in the cell nucleus. Thus, PCIF1 may play a role in mRNA synthesis by modulating RNAP IIO activity.
Probab=21.67 E-value=2.3e+02 Score=25.18 Aligned_cols=64 Identities=23% Similarity=0.477 Sum_probs=36.7
Q ss_pred ChhHHHHHHhhC---------C------CCCceEEeecccccccCCccccccCCCCCCchhhhccCccEEEECCCCCCHH
Q 025067 120 CPTLYAYLKKIR---------P------EVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE 184 (258)
Q Consensus 120 tPSly~~lk~~~---------~------~~~~~LLEyD~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee 184 (258)
-|+||..|++.. | +--+.--|.|.-|...|+ |||+. |. .| .--+.|||-.+-
T Consensus 49 p~~vf~~L~~~f~v~~EcFASPlN~~~~~ycSaFpDtD~~FGS~Gs---Ff~f~-p~------~G---sfe~NPPF~~el 115 (176)
T PF12237_consen 49 PPEVFDALHKRFGVSFECFASPLNCYFRQYCSAFPDTDAYFGSLGS---FFDFE-PV------SG---SFEANPPFDEEL 115 (176)
T ss_pred CHHHHHHHHHHcCCCEEEecChhhhhHHHhcCcCcCccccccCCcc---hhccc-CC------CC---ceeeCCCCCHHH
Confidence 367888887631 1 123444567777777663 44432 21 13 456899998775
Q ss_pred HHHHHHHHHHHhc
Q 025067 185 CLEKVSETVSFLA 197 (258)
Q Consensus 185 c~eK~A~Tir~L~ 197 (258)
+++++.-+..|+
T Consensus 116 -m~~~~~h~~~~L 127 (176)
T PF12237_consen 116 -MERMVNHIERLL 127 (176)
T ss_pred -HHHHHHHHHHHH
Confidence 455555555444
No 156
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=21.17 E-value=1.4e+02 Score=26.18 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=17.0
Q ss_pred cCccEEEECCCCC--------CHHHHHHHHHHHHHhcCC
Q 025067 169 HAFSVVVVDPPYL--------SKECLEKVSETVSFLARP 199 (258)
Q Consensus 169 ~~fD~Vv~DPPFl--------seec~eK~A~Tir~L~k~ 199 (258)
...++||+| |+. ...=...+...++.+++.
T Consensus 110 ~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~ 147 (239)
T cd01125 110 RRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ 147 (239)
T ss_pred cCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 468899999 542 222234445555555543
No 157
>PRK09483 response regulator; Provisional
Probab=21.15 E-value=2.2e+02 Score=23.30 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=4.8
Q ss_pred ccEEEECCC
Q 025067 171 FSVVVVDPP 179 (258)
Q Consensus 171 fD~Vv~DPP 179 (258)
+|+||+|.-
T Consensus 48 ~dlvi~d~~ 56 (217)
T PRK09483 48 VDVVLMDMN 56 (217)
T ss_pred CCEEEEeCC
Confidence 555555543
No 158
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=21.08 E-value=81 Score=30.78 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=18.3
Q ss_pred hccCccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 167 LKHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 167 lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
|....|+||.-|||-- .-+=+.+|.+-
T Consensus 132 Ll~eADIVVTNPPFSL------FrEyv~~Li~~ 158 (336)
T PF13651_consen 132 LLKEADIVVTNPPFSL------FREYVAQLIEY 158 (336)
T ss_pred HHhcCCEEEeCCCcHH------HHHHHHHHHHh
Confidence 3346899999999963 23445566654
No 159
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=21.05 E-value=2.1e+02 Score=23.24 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=7.3
Q ss_pred cCccEEEECCCCC
Q 025067 169 HAFSVVVVDPPYL 181 (258)
Q Consensus 169 ~~fD~Vv~DPPFl 181 (258)
+.+|+||+|.-+.
T Consensus 43 ~~~dlvild~~l~ 55 (219)
T PRK10336 43 APYDAVILDLTLP 55 (219)
T ss_pred CCCCEEEEECCCC
Confidence 3466666665443
No 160
>PRK08818 prephenate dehydrogenase; Provisional
Probab=20.76 E-value=3.5e+02 Score=26.45 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=56.9
Q ss_pred CeEEEEeC-----hhHHHHHHhhCCCCCceEEeecccccccCCccccccCCCCCCchhhhccCcc-EEEECCCCCCHHHH
Q 025067 113 SRVACIAC-----PTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFS-VVVVDPPYLSKECL 186 (258)
Q Consensus 113 ~~Iaclst-----PSly~~lk~~~~~~~~~LLEyD~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD-~Vv~DPPFlseec~ 186 (258)
.+|++||. =|+..+|++. .+.+++- ||.. |. .-..+.+.+ ...| +||+=|+=...+++
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-~~~~V~g--~D~~-----------d~-~~~~~~~~v-~~aDlVilavPv~~~~~~l 68 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-MQLEVIG--HDPA-----------DP-GSLDPATLL-QRADVLIFSAPIRHTAALI 68 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCCEEEE--EcCC-----------cc-ccCCHHHHh-cCCCEEEEeCCHHHHHHHH
Confidence 58999998 7888888864 2334444 4431 10 001222334 3578 66677766666665
Q ss_pred HHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeecCC
Q 025067 187 EKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHS 232 (258)
Q Consensus 187 eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~ 232 (258)
++++..+.. +++ .-||.=+|.+-...+..++... ..|...|+
T Consensus 69 ~~l~~~~~~-l~~--~~iVtDVgSvK~~i~~~~~~~~-~~fVG~HP 110 (370)
T PRK08818 69 EEYVALAGG-RAA--GQLWLDVTSIKQAPVAAMLASQ-AEVVGLHP 110 (370)
T ss_pred HHHhhhhcC-CCC--CeEEEECCCCcHHHHHHHHhcC-CCEEeeCC
Confidence 555542211 233 1467767766666666665443 46999997
No 161
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=20.65 E-value=2.2e+02 Score=24.77 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=24.8
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
..+|+||+| |...+-+..+.+ +........++|+.|+........+.+
T Consensus 47 ~~~DlvllD~~mp~~dG~~~l~~i----~~~~~~~~~~iI~lt~~~~~~~~~~~~ 97 (262)
T TIGR02875 47 QQPDVVVLDIIMPHLDGIGVLEKL----NEIELSARPRVIMLSAFGQEKITQRAV 97 (262)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHH----HhhccccCCeEEEEeCCCCHHHHHHHH
Confidence 457888888 444444333222 221111123677777766666555555
No 162
>PF01888 CbiD: CbiD; InterPro: IPR002748 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiD, an essential protein for cobalamin biosynthesis in both Salmonella typhimurium and Bacillus megaterium. A deletion mutant of CbiD suggests that this enzyme is involved in C-1 methylation and deacylation reactions required during the ring contraction process in the anaerobic pathway to cobalamin (similar role as CobF) []. The CbiD protein has a putative S-AdoMet binding site []. CbiD has no counterpart in the aerobic pathway.; GO: 0016740 transferase activity, 0009236 cobalamin biosynthetic process; PDB: 1SR8_A.
Probab=20.43 E-value=1e+02 Score=28.93 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccce
Q 025067 179 PYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGF 227 (258)
Q Consensus 179 PFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F 227 (258)
||-.+.-.+-+...++.........|+++||..-++++.++|++....|
T Consensus 176 P~S~~a~~~si~~~i~v~~a~g~~~vvl~~G~~ge~~a~~~~~l~~~~~ 224 (261)
T PF01888_consen 176 PMSEEAYKASIRQEIDVARASGCDTVVLVPGNYGEKFARRLLGLPEEAI 224 (261)
T ss_dssp --SHHHHHHHHHH------GGG-SEEEEESSHHHHHHHHHH-TS--EEE
T ss_pred ECCHHHHHhHHhhhhhhhhhCCCCeEEEccChHHHHHHHHhhccchhcE
Confidence 5554443333333344332222347999999999999999987755444
No 163
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=20.22 E-value=4.7e+02 Score=22.73 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=51.8
Q ss_pred CCCeEEEEeChhHHHHHH--hh-CCCCCceEEeeccccccc--------C--C-ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDMRFEQY--------G--S-DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~RF~~~--------g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
++.+|+=|||=|=|.... +. .+..+++-+|++...... | . .|+.-|..... +. .+.||+|++
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~--~~--~~~fD~I~~ 151 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY--EE--NAPYDRIYV 151 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC--Cc--CCCcCEEEE
Confidence 678999999998887642 32 234589999999655432 2 1 34555543321 11 257999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 177 DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+=-+ . .+-..+.-.+++ ++++++.-|
T Consensus 152 ~~~~--~----~~~~~l~~~Lkp-gG~lvi~~~ 177 (212)
T PRK13942 152 TAAG--P----DIPKPLIEQLKD-GGIMVIPVG 177 (212)
T ss_pred CCCc--c----cchHHHHHhhCC-CcEEEEEEc
Confidence 6322 2 222344445666 557766544
No 164
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=20.14 E-value=1.3e+02 Score=27.42 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHh--hCC-CCCceEEeecccccccC-CccccccCCCC---------
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK--IRP-EVSPKILEYDMRFEQYG-SDFAFYDYNQP--------- 160 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~--~~~-~~~~~LLEyD~RF~~~g-~~FvfYDyn~P--------- 160 (258)
++|...|.-.+... +.++|+=|||=.=|.+|.= ..| +.+++-+|+|..+.... ..|.-+....-
T Consensus 45 ~e~g~~L~~L~~~~---~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 45 PETGALLRLLARLS---GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred hhHHHHHHHHHHhc---CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 78888877766655 6789999999998888753 234 56899999998887664 35666665432
Q ss_pred CCchh-hhccCccEEEEC
Q 025067 161 QDLPL-ELKHAFSVVVVD 177 (258)
Q Consensus 161 ~~lp~-~lk~~fD~Vv~D 177 (258)
.++-+ .+.++||+|++|
T Consensus 122 l~~l~~~~~~~fDliFID 139 (219)
T COG4122 122 LDVLSRLLDGSFDLVFID 139 (219)
T ss_pred HHHHHhccCCCccEEEEe
Confidence 22222 245899999999
Done!