Query 025067
Match_columns 258
No_of_seqs 168 out of 244
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3t_A Protein methyltransfera 97.2 0.0022 7.6E-08 55.7 10.5 172 44-230 46-263 (276)
2 2qm3_A Predicted methyltransfe 96.2 0.03 1E-06 51.3 10.6 94 111-209 172-279 (373)
3 4dzr_A Protein-(glutamine-N5) 96.1 0.019 6.4E-07 46.2 7.6 133 97-232 14-194 (215)
4 3evz_A Methyltransferase; NYSG 95.8 0.064 2.2E-06 44.4 10.0 127 111-243 55-218 (230)
5 3p9n_A Possible methyltransfer 95.7 0.051 1.7E-06 43.9 8.9 114 92-209 25-154 (189)
6 1ej0_A FTSJ; methyltransferase 95.6 0.11 3.9E-06 39.8 10.1 113 94-208 4-136 (180)
7 3lpm_A Putative methyltransfer 95.4 0.014 4.9E-07 50.0 4.8 132 96-233 35-204 (259)
8 1dus_A MJ0882; hypothetical pr 95.0 0.07 2.4E-06 42.0 7.3 110 92-209 32-158 (194)
9 1wy7_A Hypothetical protein PH 95.0 0.32 1.1E-05 39.4 11.4 92 83-182 21-124 (207)
10 3q87_B N6 adenine specific DNA 94.6 0.4 1.4E-05 38.4 10.9 126 95-230 8-149 (170)
11 1sqg_A SUN protein, FMU protei 94.0 0.099 3.4E-06 48.8 6.8 124 90-220 228-390 (429)
12 2dpm_A M.dpnii 1, protein (ade 93.8 0.14 4.7E-06 46.1 7.3 73 170-246 187-283 (284)
13 1g60_A Adenine-specific methyl 93.6 0.061 2.1E-06 46.8 4.4 15 169-183 22-36 (260)
14 3dmg_A Probable ribosomal RNA 93.0 0.25 8.6E-06 45.9 7.8 123 94-221 213-355 (381)
15 2ozv_A Hypothetical protein AT 92.8 0.058 2E-06 46.7 3.0 99 111-212 36-174 (260)
16 3m6w_A RRNA methylase; rRNA me 92.5 0.073 2.5E-06 51.3 3.6 125 90-220 82-245 (464)
17 3eey_A Putative rRNA methylase 92.3 0.46 1.6E-05 38.1 7.6 93 111-207 22-138 (197)
18 3mti_A RRNA methylase; SAM-dep 92.3 0.42 1.4E-05 38.0 7.3 105 99-207 10-134 (185)
19 2ih2_A Modification methylase 92.1 0.42 1.4E-05 43.2 8.0 94 81-182 12-110 (421)
20 1nv8_A HEMK protein; class I a 92.1 0.72 2.4E-05 40.7 9.3 116 97-220 108-261 (284)
21 3tma_A Methyltransferase; thum 92.1 0.23 7.9E-06 44.7 6.1 129 95-230 186-339 (354)
22 1ws6_A Methyltransferase; stru 92.0 0.078 2.7E-06 41.2 2.6 108 94-210 25-149 (171)
23 2frx_A Hypothetical protein YE 91.9 0.35 1.2E-05 46.4 7.4 127 90-220 96-262 (479)
24 2yxl_A PH0851 protein, 450AA l 91.0 0.33 1.1E-05 45.6 6.2 124 90-220 241-405 (450)
25 1boo_A Protein (N-4 cytosine-s 90.9 0.12 4E-06 46.8 2.9 41 168-209 31-85 (323)
26 1ne2_A Hypothetical protein TA 90.0 1.6 5.5E-05 35.1 8.7 93 83-183 23-123 (200)
27 2zig_A TTHA0409, putative modi 89.8 0.16 5.4E-06 45.0 2.7 14 169-182 39-52 (297)
28 3k0b_A Predicted N6-adenine-sp 89.6 0.59 2E-05 43.6 6.5 69 169-242 306-379 (393)
29 3dou_A Ribosomal RNA large sub 89.3 3.2 0.00011 34.1 10.3 152 94-247 7-183 (191)
30 3m4x_A NOL1/NOP2/SUN family pr 89.1 0.41 1.4E-05 46.0 5.2 125 89-220 86-250 (456)
31 1uwv_A 23S rRNA (uracil-5-)-me 89.1 4.7 0.00016 37.5 12.3 119 95-220 269-402 (433)
32 3ajd_A Putative methyltransfer 88.9 0.14 4.8E-06 44.6 1.6 124 91-220 65-227 (274)
33 1ixk_A Methyltransferase; open 88.8 1.1 3.7E-05 40.0 7.4 123 90-220 100-262 (315)
34 3ofk_A Nodulation protein S; N 88.4 0.71 2.4E-05 37.5 5.5 118 83-208 25-154 (216)
35 4df3_A Fibrillarin-like rRNA/T 88.4 0.97 3.3E-05 39.6 6.7 105 99-207 61-181 (233)
36 3ldg_A Putative uncharacterize 88.2 0.54 1.8E-05 43.9 5.2 64 169-235 299-367 (384)
37 4dmg_A Putative uncharacterize 88.0 0.24 8.2E-06 46.3 2.7 86 90-182 197-292 (393)
38 2yx1_A Hypothetical protein MJ 87.9 0.61 2.1E-05 42.0 5.3 101 90-206 177-289 (336)
39 2kw5_A SLR1183 protein; struct 87.6 2.1 7.1E-05 34.2 7.7 117 84-208 5-131 (202)
40 1ve3_A Hypothetical protein PH 87.4 1.9 6.5E-05 34.9 7.5 107 95-209 23-143 (227)
41 2gpy_A O-methyltransferase; st 87.4 1.5 5E-05 36.3 7.0 107 91-207 37-159 (233)
42 3grz_A L11 mtase, ribosomal pr 87.2 1.2 4E-05 36.0 6.1 140 94-247 44-196 (205)
43 3ntv_A MW1564 protein; rossman 87.1 1.1 3.7E-05 37.6 6.0 106 92-206 55-174 (232)
44 3cgg_A SAM-dependent methyltra 87.0 3.4 0.00012 32.0 8.6 92 111-209 46-148 (195)
45 3ldu_A Putative methylase; str 86.8 0.54 1.9E-05 43.6 4.3 64 169-235 300-368 (385)
46 3hm2_A Precorrin-6Y C5,15-meth 86.7 8.5 0.00029 29.6 10.7 92 111-209 25-128 (178)
47 3v97_A Ribosomal RNA large sub 86.2 1.2 4.1E-05 44.7 6.7 72 169-245 302-381 (703)
48 4dcm_A Ribosomal RNA large sub 86.0 0.79 2.7E-05 42.3 5.0 105 111-221 222-349 (375)
49 2as0_A Hypothetical protein PH 86.0 0.51 1.8E-05 43.2 3.7 87 89-182 199-301 (396)
50 1o9g_A RRNA methyltransferase; 85.6 0.76 2.6E-05 38.7 4.3 56 152-209 149-214 (250)
51 3bzb_A Uncharacterized protein 85.6 3.2 0.00011 36.0 8.4 106 89-198 59-191 (281)
52 1eg2_A Modification methylase 85.6 0.46 1.6E-05 43.1 3.1 15 169-183 57-71 (319)
53 2oo3_A Protein involved in cat 85.3 0.61 2.1E-05 42.5 3.7 94 97-195 80-184 (283)
54 3v97_A Ribosomal RNA large sub 84.9 0.69 2.3E-05 46.4 4.3 115 87-210 520-659 (703)
55 2frn_A Hypothetical protein PH 84.8 1.2 4E-05 38.8 5.2 106 89-208 106-225 (278)
56 3tr6_A O-methyltransferase; ce 84.7 1.9 6.3E-05 35.2 6.2 107 90-206 46-172 (225)
57 2igt_A SAM dependent methyltra 84.4 0.96 3.3E-05 41.0 4.6 102 99-206 143-270 (332)
58 2pxx_A Uncharacterized protein 84.3 1.4 4.7E-05 35.1 5.1 104 99-209 31-160 (215)
59 1wxx_A TT1595, hypothetical pr 84.1 0.54 1.9E-05 43.0 2.9 93 112-209 210-326 (382)
60 3c0k_A UPF0064 protein YCCW; P 84.1 0.51 1.7E-05 43.3 2.7 93 111-208 220-339 (396)
61 2esr_A Methyltransferase; stru 84.0 0.4 1.4E-05 37.8 1.7 94 111-210 31-140 (177)
62 2pjd_A Ribosomal RNA small sub 83.9 1.4 4.7E-05 39.5 5.4 115 97-221 185-318 (343)
63 2avd_A Catechol-O-methyltransf 83.8 3.8 0.00013 33.4 7.7 110 87-206 48-177 (229)
64 2ift_A Putative methylase HI07 83.4 0.33 1.1E-05 40.0 1.0 95 111-210 53-165 (201)
65 2ipx_A RRNA 2'-O-methyltransfe 83.1 1.9 6.7E-05 35.7 5.7 95 111-209 77-183 (233)
66 2g1p_A DNA adenine methylase; 82.0 2.2 7.5E-05 37.9 5.9 74 170-248 174-271 (278)
67 2fhp_A Methylase, putative; al 81.9 0.25 8.5E-06 38.9 -0.3 109 96-210 27-156 (187)
68 2qfm_A Spermine synthase; sper 81.7 1.3 4.6E-05 41.6 4.6 37 111-147 188-225 (364)
69 2b78_A Hypothetical protein SM 81.4 0.92 3.2E-05 41.8 3.3 88 89-182 194-297 (385)
70 3gu3_A Methyltransferase; alph 81.1 1.7 5.8E-05 37.3 4.8 113 89-209 2-127 (284)
71 3duw_A OMT, O-methyltransferas 80.5 7.1 0.00024 31.7 8.1 105 92-206 42-165 (223)
72 2yxd_A Probable cobalt-precorr 80.2 9.2 0.00032 29.3 8.4 86 111-208 35-131 (183)
73 1vbf_A 231AA long hypothetical 79.9 1.1 3.8E-05 36.8 3.0 112 83-210 45-167 (231)
74 2fpo_A Methylase YHHF; structu 79.6 0.77 2.6E-05 37.8 2.0 94 111-209 54-161 (202)
75 3tm4_A TRNA (guanine N2-)-meth 78.6 1.4 4.9E-05 40.2 3.6 126 97-230 203-352 (373)
76 3adn_A Spermidine synthase; am 78.5 2.5 8.7E-05 37.6 5.1 94 111-208 83-198 (294)
77 2jjq_A Uncharacterized RNA met 78.3 13 0.00043 34.9 10.1 99 89-197 269-378 (425)
78 3u81_A Catechol O-methyltransf 78.3 4.9 0.00017 33.0 6.5 109 91-207 41-169 (221)
79 1yf3_A DNA adenine methylase; 78.0 2.9 9.8E-05 36.8 5.3 59 170-229 164-237 (259)
80 3tfw_A Putative O-methyltransf 77.7 9.7 0.00033 32.1 8.4 105 92-206 47-168 (248)
81 2yxe_A Protein-L-isoaspartate 77.5 2.7 9.2E-05 34.0 4.6 114 84-211 53-180 (215)
82 2b9e_A NOL1/NOP2/SUN domain fa 76.9 2.3 7.9E-05 38.3 4.4 91 90-183 83-187 (309)
83 3dr5_A Putative O-methyltransf 76.6 7.5 0.00025 32.6 7.3 109 93-206 38-161 (221)
84 2h00_A Methyltransferase 10 do 76.0 6.9 0.00024 32.6 6.9 88 96-183 47-153 (254)
85 3id6_C Fibrillarin-like rRNA/T 74.8 5.4 0.00018 34.6 6.1 112 92-207 57-180 (232)
86 3bt7_A TRNA (uracil-5-)-methyl 74.7 2 6.7E-05 39.1 3.4 107 97-213 199-333 (369)
87 1sui_A Caffeoyl-COA O-methyltr 74.0 11 0.00037 32.1 7.8 105 92-206 63-188 (247)
88 1fbn_A MJ fibrillarin homologu 73.7 8.2 0.00028 31.9 6.7 92 111-207 74-177 (230)
89 1mjf_A Spermidine synthase; sp 73.2 3.6 0.00012 35.9 4.6 97 111-209 75-194 (281)
90 3gru_A Dimethyladenosine trans 73.1 4.1 0.00014 36.6 5.1 93 81-182 22-126 (295)
91 3ll7_A Putative methyltransfer 72.9 4.9 0.00017 38.1 5.7 112 84-198 60-200 (410)
92 3lbf_A Protein-L-isoaspartate 72.1 2.7 9.2E-05 33.9 3.3 110 85-210 54-176 (210)
93 3e05_A Precorrin-6Y C5,15-meth 72.0 35 0.0012 27.1 13.5 90 111-208 40-142 (204)
94 3a27_A TYW2, uncharacterized p 71.4 4.2 0.00014 35.2 4.6 102 86-198 96-211 (272)
95 3r3h_A O-methyltransferase, SA 71.2 5.4 0.00019 33.9 5.2 107 90-206 42-168 (242)
96 3fpf_A Mtnas, putative unchara 70.9 14 0.00047 33.6 8.0 118 86-214 97-228 (298)
97 2plw_A Ribosomal RNA methyltra 70.6 27 0.00092 27.5 8.9 150 94-245 4-196 (201)
98 2b2c_A Spermidine synthase; be 70.5 5.6 0.00019 35.8 5.3 95 111-209 108-223 (314)
99 3pfg_A N-methyltransferase; N, 70.4 18 0.0006 30.1 8.1 106 95-207 35-150 (263)
100 2pt6_A Spermidine synthase; tr 70.3 5.7 0.0002 35.6 5.3 93 111-207 116-229 (321)
101 3gdh_A Trimethylguanosine synt 70.3 3.2 0.00011 34.3 3.4 97 96-199 65-173 (241)
102 1l3i_A Precorrin-6Y methyltran 69.2 36 0.0012 26.0 10.4 86 111-208 33-134 (192)
103 3mb5_A SAM-dependent methyltra 68.4 5.2 0.00018 33.3 4.3 107 87-208 73-194 (255)
104 1g8a_A Fibrillarin-like PRE-rR 68.2 9.3 0.00032 31.2 5.8 94 111-208 73-178 (227)
105 1yzh_A TRNA (guanine-N(7)-)-me 67.6 32 0.0011 27.8 8.9 95 111-209 41-157 (214)
106 1jsx_A Glucose-inhibited divis 67.5 9.5 0.00032 30.4 5.6 149 44-220 15-177 (207)
107 3bwc_A Spermidine synthase; SA 67.3 3.9 0.00013 36.2 3.5 95 111-209 95-211 (304)
108 3e8s_A Putative SAM dependent 67.0 2.8 9.7E-05 33.5 2.3 108 96-208 40-152 (227)
109 4dad_A Putative pilus assembly 66.8 11 0.00038 27.8 5.6 59 169-230 66-124 (146)
110 3heb_A Response regulator rece 66.3 7.3 0.00025 29.2 4.5 61 169-230 58-118 (152)
111 2nxc_A L11 mtase, ribosomal pr 66.2 7 0.00024 33.3 4.8 121 95-226 105-240 (254)
112 2hnk_A SAM-dependent O-methylt 64.9 7.1 0.00024 32.4 4.5 113 87-208 39-181 (239)
113 3e23_A Uncharacterized protein 64.6 19 0.00065 28.7 6.9 92 111-208 43-141 (211)
114 2h1r_A Dimethyladenosine trans 64.6 8.4 0.00029 34.0 5.2 89 86-183 19-119 (299)
115 3c3y_A Pfomt, O-methyltransfer 63.6 14 0.00048 31.0 6.2 106 92-207 54-180 (237)
116 3kht_A Response regulator; PSI 62.8 8.6 0.0003 28.4 4.2 62 168-230 49-110 (144)
117 3m70_A Tellurite resistance pr 62.7 8.5 0.00029 32.6 4.7 101 98-207 110-222 (286)
118 3njr_A Precorrin-6Y methylase; 62.7 61 0.0021 26.3 10.1 112 111-232 55-182 (204)
119 2p35_A Trans-aconitate 2-methy 62.2 4 0.00014 33.7 2.4 121 83-209 4-133 (259)
120 3dtn_A Putative methyltransfer 61.8 16 0.00055 29.6 6.1 92 111-208 44-148 (234)
121 3cbg_A O-methyltransferase; cy 61.7 6.4 0.00022 32.9 3.6 104 93-206 57-180 (232)
122 1xdz_A Methyltransferase GIDB; 61.5 12 0.00041 31.1 5.3 93 111-211 70-177 (240)
123 2i7c_A Spermidine synthase; tr 61.2 13 0.00046 32.3 5.8 94 111-208 78-192 (283)
124 1inl_A Spermidine synthase; be 59.4 5.7 0.00019 35.0 3.1 95 111-209 90-206 (296)
125 2f8l_A Hypothetical protein LM 59.4 4.7 0.00016 35.9 2.5 92 85-182 103-213 (344)
126 3d2l_A SAM-dependent methyltra 59.1 26 0.00089 28.3 6.9 103 99-209 22-138 (243)
127 1i1n_A Protein-L-isoaspartate 59.1 4.3 0.00015 33.1 2.1 112 87-210 54-184 (226)
128 2pbf_A Protein-L-isoaspartate 58.6 11 0.00036 30.8 4.4 113 88-210 58-195 (227)
129 1iy9_A Spermidine synthase; ro 58.6 8 0.00027 33.7 3.9 68 111-181 75-159 (275)
130 2oyr_A UPF0341 protein YHIQ; a 58.6 3.8 0.00013 36.1 1.8 15 169-183 163-177 (258)
131 3gt7_A Sensor protein; structu 58.2 9.2 0.00031 28.9 3.7 51 169-220 50-100 (154)
132 3lua_A Response regulator rece 57.9 14 0.00049 27.0 4.7 61 169-230 49-110 (140)
133 1ri5_A MRNA capping enzyme; me 57.7 31 0.0011 28.8 7.3 109 97-210 50-176 (298)
134 3g2m_A PCZA361.24; SAM-depende 57.7 33 0.0011 29.2 7.6 93 111-209 82-191 (299)
135 2r25_B Osmosensing histidine p 57.3 16 0.00053 26.9 4.8 57 169-230 51-110 (133)
136 3jte_A Response regulator rece 57.0 13 0.00046 27.2 4.4 59 169-230 48-106 (143)
137 1wzn_A SAM-dependent methyltra 56.3 25 0.00085 28.8 6.4 104 97-208 27-145 (252)
138 3lcc_A Putative methyl chlorid 56.3 10 0.00035 31.0 4.0 110 91-207 47-170 (235)
139 4e7p_A Response regulator; DNA 56.1 12 0.0004 28.0 4.0 60 168-230 64-123 (150)
140 2qxy_A Response regulator; reg 55.1 15 0.00051 26.9 4.3 49 168-220 46-94 (142)
141 1uir_A Polyamine aminopropyltr 54.9 16 0.00053 32.4 5.2 95 111-209 77-196 (314)
142 3iv6_A Putative Zn-dependent a 54.8 73 0.0025 27.8 9.5 96 111-208 45-148 (261)
143 3b2n_A Uncharacterized protein 54.7 13 0.00044 27.2 3.9 59 169-230 48-106 (133)
144 4htf_A S-adenosylmethionine-de 54.6 15 0.00051 31.0 4.8 105 100-209 58-174 (285)
145 1yb2_A Hypothetical protein TA 54.5 16 0.00055 31.1 5.1 90 111-211 110-214 (275)
146 3dp7_A SAM-dependent methyltra 54.5 76 0.0026 28.2 9.7 91 111-207 179-286 (363)
147 1qkk_A DCTD, C4-dicarboxylate 54.4 22 0.00074 26.6 5.2 59 169-230 46-104 (155)
148 2nyu_A Putative ribosomal RNA 53.8 64 0.0022 25.1 8.2 114 94-208 4-145 (196)
149 1jg1_A PIMT;, protein-L-isoasp 52.1 18 0.00063 29.7 4.9 107 89-210 72-191 (235)
150 1xj5_A Spermidine synthase 1; 51.9 13 0.00046 33.6 4.3 93 111-207 120-234 (334)
151 3grc_A Sensor protein, kinase; 51.8 19 0.00064 26.2 4.5 62 168-230 48-110 (140)
152 2o07_A Spermidine synthase; st 51.5 6.7 0.00023 34.9 2.2 94 111-208 95-209 (304)
153 2p8j_A S-adenosylmethionine-de 51.4 25 0.00084 27.8 5.4 110 90-208 4-128 (209)
154 3eod_A Protein HNR; response r 51.3 12 0.0004 27.0 3.2 59 168-229 49-109 (130)
155 1dbw_A Transcriptional regulat 51.1 23 0.00079 25.3 4.8 59 169-230 46-104 (126)
156 2rjn_A Response regulator rece 50.9 24 0.00083 26.2 5.0 49 169-220 50-98 (154)
157 3sm3_A SAM-dependent methyltra 50.8 12 0.00041 30.0 3.4 93 111-208 30-141 (235)
158 3hzh_A Chemotaxis response reg 50.7 18 0.00061 27.4 4.3 58 170-230 83-140 (157)
159 2avn_A Ubiquinone/menaquinone 50.7 28 0.00095 29.0 5.8 103 98-209 42-153 (260)
160 3n53_A Response regulator rece 50.6 6.2 0.00021 29.1 1.6 62 168-230 44-105 (140)
161 3to5_A CHEY homolog; alpha(5)b 50.6 14 0.00047 29.0 3.7 58 169-230 56-116 (134)
162 3bkx_A SAM-dependent methyltra 50.5 1E+02 0.0035 25.3 9.4 94 111-207 43-158 (275)
163 4fzv_A Putative methyltransfer 50.1 12 0.0004 34.8 3.6 98 78-182 117-235 (359)
164 3kto_A Response regulator rece 49.0 15 0.00052 26.9 3.5 59 169-230 49-109 (136)
165 3f6p_A Transcriptional regulat 49.0 23 0.0008 25.3 4.5 59 168-230 44-102 (120)
166 2qr3_A Two-component system re 48.9 23 0.00078 25.6 4.5 59 168-229 45-108 (140)
167 3cz5_A Two-component response 48.9 23 0.00079 26.3 4.6 60 168-230 49-108 (153)
168 3mm4_A Histidine kinase homolo 48.7 15 0.0005 29.8 3.7 60 170-230 119-181 (206)
169 3orh_A Guanidinoacetate N-meth 48.6 23 0.00079 29.6 5.0 93 111-208 60-170 (236)
170 3hnr_A Probable methyltransfer 48.5 35 0.0012 27.1 5.9 100 98-208 35-145 (220)
171 3k6r_A Putative transferase PH 48.4 18 0.0006 32.2 4.4 103 85-199 101-217 (278)
172 2zfu_A Nucleomethylin, cerebra 48.0 64 0.0022 25.6 7.5 99 95-208 53-151 (215)
173 2r6z_A UPF0341 protein in RSP 48.0 7.4 0.00025 33.9 1.8 70 111-183 83-174 (258)
174 3ocj_A Putative exported prote 47.8 30 0.001 29.7 5.7 92 111-208 118-227 (305)
175 3eul_A Possible nitrate/nitrit 47.8 13 0.00046 27.7 3.1 60 168-230 59-118 (152)
176 3ccf_A Cyclopropane-fatty-acyl 47.8 7.7 0.00026 32.8 1.9 93 111-209 57-155 (279)
177 3l8d_A Methyltransferase; stru 47.5 13 0.00046 30.1 3.3 104 97-208 40-153 (242)
178 3o4f_A Spermidine synthase; am 47.5 66 0.0022 29.0 8.1 46 98-144 71-118 (294)
179 3ujc_A Phosphoethanolamine N-m 46.7 40 0.0014 27.5 6.1 102 101-208 44-159 (266)
180 3c3p_A Methyltransferase; NP_9 46.6 27 0.00092 28.0 5.0 104 92-206 40-158 (210)
181 1srr_A SPO0F, sporulation resp 45.9 16 0.00056 26.0 3.2 49 169-220 46-94 (124)
182 1k68_A Phytochrome response re 45.6 21 0.00072 25.6 3.8 61 169-230 54-114 (140)
183 3hv2_A Response regulator/HD d 45.6 19 0.00064 27.0 3.6 60 168-230 56-116 (153)
184 3ftd_A Dimethyladenosine trans 45.6 41 0.0014 28.9 6.2 93 84-182 6-107 (249)
185 2cmg_A Spermidine synthase; tr 45.4 24 0.00081 30.6 4.7 90 111-209 72-172 (262)
186 3eqz_A Response regulator; str 45.4 38 0.0013 24.1 5.2 57 171-230 47-108 (135)
187 3m6m_D Sensory/regulatory prot 45.3 23 0.0008 26.3 4.1 61 168-229 56-118 (143)
188 2bm8_A Cephalosporin hydroxyla 45.1 1.3E+02 0.0046 25.0 11.6 106 94-207 67-186 (236)
189 2xyq_A Putative 2'-O-methyl tr 44.8 52 0.0018 29.3 6.9 85 111-206 63-169 (290)
190 3f6c_A Positive transcription 44.7 12 0.0004 27.1 2.3 68 160-230 35-103 (134)
191 2gs9_A Hypothetical protein TT 44.5 67 0.0023 25.4 7.0 99 102-209 28-133 (211)
192 3axs_A Probable N(2),N(2)-dime 44.4 13 0.00043 34.9 2.9 14 168-182 123-136 (392)
193 3s1s_A Restriction endonucleas 43.9 36 0.0012 35.6 6.4 95 85-182 292-411 (878)
194 3kcn_A Adenylate cyclase homol 43.6 26 0.00089 26.1 4.1 48 170-220 48-95 (151)
195 3tqs_A Ribosomal RNA small sub 43.6 28 0.00097 30.2 4.9 92 85-181 5-107 (255)
196 1r18_A Protein-L-isoaspartate( 43.5 14 0.00048 30.2 2.8 110 88-209 62-195 (227)
197 2dul_A N(2),N(2)-dimethylguano 43.4 11 0.00036 34.9 2.2 58 86-145 22-83 (378)
198 3hdg_A Uncharacterized protein 42.8 12 0.00041 27.3 2.1 49 169-220 50-98 (137)
199 2yvl_A TRMI protein, hypotheti 42.7 26 0.0009 28.5 4.4 87 111-209 91-191 (248)
200 2ar0_A M.ecoki, type I restric 42.6 9.7 0.00033 36.8 1.9 95 85-183 146-274 (541)
201 3nhm_A Response regulator; pro 41.6 30 0.001 24.8 4.1 61 168-230 45-105 (133)
202 3cg0_A Response regulator rece 41.5 33 0.0011 24.7 4.3 58 169-230 53-111 (140)
203 2zay_A Response regulator rece 41.1 17 0.00057 26.8 2.7 57 169-229 51-110 (147)
204 3cnb_A DNA-binding response re 40.6 26 0.00088 25.3 3.6 58 169-230 53-113 (143)
205 3gjy_A Spermidine synthase; AP 40.4 31 0.0011 31.3 4.9 93 113-209 91-201 (317)
206 1m6y_A S-adenosyl-methyltransf 40.3 37 0.0013 30.3 5.3 70 111-183 26-111 (301)
207 1y8c_A S-adenosylmethionine-de 40.2 27 0.00092 28.1 4.0 105 96-209 23-143 (246)
208 1qo0_D AMIR; binding protein, 40.1 29 0.00098 27.2 4.1 58 168-229 50-107 (196)
209 1zx0_A Guanidinoacetate N-meth 40.1 33 0.0011 28.1 4.6 94 111-209 60-171 (236)
210 3io3_A DEHA2D07832P; chaperone 40.1 13 0.00044 34.0 2.2 21 170-199 155-176 (348)
211 3hdv_A Response regulator; PSI 40.1 21 0.00073 25.8 3.1 58 171-230 53-110 (136)
212 2qsj_A DNA-binding response re 39.4 27 0.00092 25.9 3.6 49 169-220 49-97 (154)
213 3i16_A Aluminum resistance pro 38.9 87 0.003 29.1 7.8 106 87-195 65-208 (427)
214 3jwg_A HEN1, methyltransferase 38.7 1.2E+02 0.004 24.1 7.6 100 94-200 15-134 (219)
215 1zq9_A Probable dimethyladenos 38.4 19 0.00065 31.3 3.0 88 84-182 3-105 (285)
216 3jwh_A HEN1; methyltransferase 38.2 1.2E+02 0.0039 24.2 7.5 109 91-208 12-140 (217)
217 3ilh_A Two component response 38.0 30 0.001 25.1 3.6 60 169-229 59-121 (146)
218 3llv_A Exopolyphosphatase-rela 37.8 1.2E+02 0.0042 22.5 7.7 84 112-197 6-95 (141)
219 3ufb_A Type I restriction-modi 37.7 14 0.00046 35.8 2.1 15 169-183 301-315 (530)
220 3gl9_A Response regulator; bet 37.6 41 0.0014 24.1 4.3 60 169-229 45-104 (122)
221 3bxo_A N,N-dimethyltransferase 37.5 1E+02 0.0034 24.6 7.1 104 96-208 26-141 (239)
222 3h1g_A Chemotaxis protein CHEY 37.4 31 0.0011 24.9 3.6 58 170-228 51-108 (129)
223 1yub_A Ermam, rRNA methyltrans 37.4 8.6 0.00029 32.4 0.6 90 85-183 5-106 (245)
224 1nt2_A Fibrillarin-like PRE-rR 37.1 67 0.0023 26.3 6.1 94 111-208 57-161 (210)
225 1k66_A Phytochrome response re 36.3 23 0.0008 25.7 2.8 58 169-230 61-121 (149)
226 3jzl_A Putative cystathionine 36.3 86 0.003 28.8 7.2 108 87-195 51-191 (409)
227 1dl5_A Protein-L-isoaspartate 36.2 22 0.00074 31.1 3.0 89 111-210 75-177 (317)
228 1o54_A SAM-dependent O-methylt 36.1 16 0.00054 31.0 2.0 88 111-209 112-214 (277)
229 1jbe_A Chemotaxis protein CHEY 35.9 39 0.0013 24.0 3.9 57 169-229 48-107 (128)
230 2qzj_A Two-component response 35.7 23 0.0008 26.0 2.7 57 169-229 47-103 (136)
231 3g5t_A Trans-aconitate 3-methy 35.2 84 0.0029 26.6 6.6 104 100-206 25-147 (299)
232 3t6k_A Response regulator rece 35.1 31 0.0011 25.3 3.3 52 168-220 46-97 (136)
233 2okc_A Type I restriction enzy 34.7 15 0.00051 34.1 1.8 91 85-183 148-266 (445)
234 1cr0_A DNA primase/helicase; R 34.6 17 0.00057 31.2 1.9 41 168-208 145-194 (296)
235 2qvg_A Two component response 34.5 33 0.0011 24.9 3.4 58 169-230 58-118 (143)
236 3hvy_A Cystathionine beta-lyas 34.5 2E+02 0.0068 26.6 9.4 106 87-195 66-208 (427)
237 3lkd_A Type I restriction-modi 34.4 17 0.00057 35.4 2.1 98 84-182 193-309 (542)
238 3k9g_A PF-32 protein; ssgcid, 34.2 39 0.0013 28.2 4.2 18 166-183 140-158 (267)
239 2jba_A Phosphate regulon trans 34.2 36 0.0012 24.0 3.5 58 169-230 45-105 (127)
240 3hem_A Cyclopropane-fatty-acyl 33.9 1.1E+02 0.0037 26.0 7.0 90 111-209 72-184 (302)
241 3cc8_A Putative methyltransfer 33.8 21 0.0007 28.4 2.3 93 111-209 32-131 (230)
242 3ou2_A SAM-dependent methyltra 33.6 67 0.0023 25.2 5.3 103 97-209 34-147 (218)
243 2r3s_A Uncharacterized protein 33.5 89 0.0031 26.7 6.5 90 111-207 165-270 (335)
244 1i3c_A Response regulator RCP1 33.4 59 0.002 24.0 4.7 61 169-230 60-120 (149)
245 1tmy_A CHEY protein, TMY; chem 32.5 45 0.0015 23.3 3.8 59 169-230 46-104 (120)
246 3eq2_A Probable two-component 32.5 44 0.0015 29.7 4.5 55 169-229 48-105 (394)
247 3b3j_A Histone-arginine methyl 32.2 68 0.0023 30.4 5.9 102 98-206 144-261 (480)
248 3khk_A Type I restriction-modi 31.9 18 0.00061 35.1 1.9 14 169-182 328-341 (544)
249 1dz3_A Stage 0 sporulation pro 31.8 55 0.0019 23.4 4.2 60 169-230 47-106 (130)
250 3snk_A Response regulator CHEY 31.8 16 0.00055 26.6 1.2 59 169-230 58-116 (135)
251 3kjh_A CO dehydrogenase/acetyl 31.7 19 0.00067 29.1 1.8 18 166-183 126-145 (254)
252 2b25_A Hypothetical protein; s 31.6 55 0.0019 28.6 4.9 90 111-209 105-220 (336)
253 2xvm_A Tellurite resistance pr 31.3 13 0.00044 29.0 0.6 100 98-208 22-136 (199)
254 2pl1_A Transcriptional regulat 31.1 56 0.0019 22.8 4.0 58 169-229 43-100 (121)
255 3q9s_A DNA-binding response re 30.6 40 0.0014 28.0 3.6 58 168-229 79-136 (249)
256 2i62_A Nicotinamide N-methyltr 30.3 9.9 0.00034 31.3 -0.2 57 151-208 138-198 (265)
257 3crn_A Response regulator rece 30.0 58 0.002 23.5 4.1 58 169-229 46-103 (132)
258 1pjz_A Thiopurine S-methyltran 30.0 1.2E+02 0.004 24.4 6.3 112 91-208 2-140 (203)
259 3dh0_A SAM dependent methyltra 30.0 43 0.0015 26.6 3.6 93 111-208 37-143 (219)
260 1kgs_A DRRD, DNA binding respo 29.9 68 0.0023 25.4 4.8 58 169-229 45-102 (225)
261 3rqi_A Response regulator prot 29.8 23 0.00079 27.7 1.9 56 169-230 50-108 (184)
262 1zh2_A KDP operon transcriptio 29.6 23 0.00079 24.8 1.7 57 169-229 44-100 (121)
263 3cu5_A Two component transcrip 29.3 21 0.00071 26.5 1.5 58 169-229 48-105 (141)
264 1dcf_A ETR1 protein; beta-alph 29.2 65 0.0022 23.2 4.2 54 172-229 52-111 (136)
265 3bgv_A MRNA CAP guanine-N7 met 29.1 62 0.0021 27.7 4.7 117 91-211 15-158 (313)
266 3ege_A Putative methyltransfer 28.7 1.9E+02 0.0066 23.8 7.6 92 111-208 34-130 (261)
267 2a9o_A Response regulator; ess 28.4 53 0.0018 22.7 3.5 48 169-220 44-91 (120)
268 1s8n_A Putative antiterminator 28.3 54 0.0019 25.8 3.9 58 168-229 56-113 (205)
269 2p7i_A Hypothetical protein; p 28.2 86 0.003 24.9 5.2 104 98-209 31-142 (250)
270 2ayx_A Sensor kinase protein R 27.9 53 0.0018 27.4 4.0 67 158-230 160-230 (254)
271 2fk8_A Methoxy mycolic acid sy 27.8 58 0.002 27.8 4.3 102 99-209 77-195 (318)
272 1x19_A CRTF-related protein; m 27.6 3E+02 0.01 23.9 9.3 90 111-208 190-295 (359)
273 2ip2_A Probable phenazine-spec 27.3 2.9E+02 0.01 23.6 11.2 86 113-207 169-271 (334)
274 1zgz_A Torcad operon transcrip 27.2 51 0.0017 23.1 3.2 57 169-229 45-101 (122)
275 1mb3_A Cell division response 27.1 47 0.0016 23.3 3.0 51 169-220 44-94 (124)
276 3kkz_A Uncharacterized protein 27.1 83 0.0029 26.0 5.0 92 111-208 46-150 (267)
277 1p6q_A CHEY2; chemotaxis, sign 27.1 36 0.0012 24.2 2.4 49 168-220 49-100 (129)
278 3c3m_A Response regulator rece 27.1 79 0.0027 22.9 4.4 11 169-179 46-56 (138)
279 2qe6_A Uncharacterized protein 26.7 2.4E+02 0.0082 24.0 8.1 97 111-209 77-197 (274)
280 3r0q_C Probable protein argini 26.5 84 0.0029 28.3 5.3 96 98-199 49-161 (376)
281 3dlc_A Putative S-adenosyl-L-m 26.2 37 0.0013 26.6 2.5 103 99-207 31-147 (219)
282 2w0m_A SSO2452; RECA, SSPF, un 26.1 27 0.00091 27.8 1.6 41 169-209 120-166 (235)
283 1tw3_A COMT, carminomycin 4-O- 26.0 1.5E+02 0.0053 25.6 6.8 89 111-207 183-287 (360)
284 2yqz_A Hypothetical protein TT 25.8 79 0.0027 25.6 4.6 108 92-207 18-140 (263)
285 3ht4_A Aluminum resistance pro 25.5 87 0.003 28.8 5.3 106 87-195 57-197 (431)
286 1u2z_A Histone-lysine N-methyl 25.3 2.3E+02 0.0078 26.7 8.2 94 111-207 242-358 (433)
287 2pwy_A TRNA (adenine-N(1)-)-me 25.3 23 0.00079 29.0 1.2 89 111-209 96-199 (258)
288 3lte_A Response regulator; str 25.1 43 0.0015 23.9 2.5 51 168-220 48-98 (132)
289 1kpg_A CFA synthase;, cyclopro 25.1 1.7E+02 0.0057 24.3 6.6 101 99-208 51-168 (287)
290 3r0j_A Possible two component 24.6 81 0.0028 25.8 4.4 59 169-230 66-124 (250)
291 2gkg_A Response regulator homo 24.4 80 0.0027 21.9 3.9 59 169-229 48-107 (127)
292 2qv0_A Protein MRKE; structura 24.3 42 0.0014 24.4 2.4 38 169-210 54-92 (143)
293 3bus_A REBM, methyltransferase 24.2 79 0.0027 26.0 4.3 106 97-208 46-166 (273)
294 1xhf_A DYE resistance, aerobic 24.2 83 0.0028 22.0 3.9 48 169-220 46-93 (123)
295 3fut_A Dimethyladenosine trans 23.9 1.1E+02 0.0036 26.9 5.3 93 81-182 19-122 (271)
296 1qzz_A RDMB, aclacinomycin-10- 23.3 1.6E+02 0.0053 25.7 6.3 90 111-208 182-287 (374)
297 3nx3_A Acoat, acetylornithine 22.8 2.2E+02 0.0074 24.6 7.1 90 91-182 74-191 (395)
298 3igf_A ALL4481 protein; two-do 22.8 35 0.0012 31.5 2.0 36 169-222 123-158 (374)
299 3m33_A Uncharacterized protein 22.7 2.2E+02 0.0077 22.8 6.8 82 94-178 32-119 (226)
300 2pln_A HP1043, response regula 21.9 85 0.0029 22.5 3.6 55 168-229 60-114 (137)
301 1vl5_A Unknown conserved prote 21.8 64 0.0022 26.5 3.3 109 88-207 17-139 (260)
302 2d1p_A TUSD, hypothetical UPF0 21.6 62 0.0021 25.8 3.0 29 171-199 15-43 (140)
303 3cfy_A Putative LUXO repressor 21.1 83 0.0028 22.9 3.5 58 169-229 47-104 (137)
304 2fyt_A Protein arginine N-meth 20.6 4.2E+02 0.014 23.2 8.7 89 111-205 64-168 (340)
305 3q7e_A Protein arginine N-meth 20.6 24 0.00082 31.6 0.4 85 111-199 66-165 (349)
306 3ndn_A O-succinylhomoserine su 20.3 68 0.0023 29.2 3.4 87 92-180 78-176 (414)
307 4eyb_A Beta-lactamase NDM-1; m 20.3 95 0.0033 26.3 4.1 28 169-197 82-109 (270)
No 1
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=97.21 E-value=0.0022 Score=55.67 Aligned_cols=172 Identities=17% Similarity=0.224 Sum_probs=99.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCccccccc-----ccccChhHHHHHHHHHHhhcCCCCCeEEEE
Q 025067 44 MLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLS-----QFWYDAVTAETVAQEAVSLCSDSDSRVACI 118 (258)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlS-----QFWYsd~Ta~~La~~l~~~a~~~~~~Iacl 118 (258)
.|+.+.++.|+++...+..+.---+ +....+-|.+. ..+......+.|++.+++....+..+|+=|
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~p~~~---------i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~~~~~~vLDl 116 (276)
T 2b3t_A 46 QLTDEQCQQLDALLTRRRDGEPIAH---------LTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDL 116 (276)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCCHHH---------HSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHcCCChhH---------eeeeeEECCceEEeCCCCcccCchHHHHHHHHHHhcccCCCEEEEe
Confidence 5888999999998877654321100 01111222221 111222345666677666542256799999
Q ss_pred eChhHHH--HHHhhCCCCCceEEeecccc--------cccC--C-ccccccCCCCCCchhhhccCccEEEECCCCCCH--
Q 025067 119 ACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG--S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK-- 183 (258)
Q Consensus 119 stPSly~--~lk~~~~~~~~~LLEyD~RF--------~~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse-- 183 (258)
||=|=.. .+.+..|..+++.+|++..- ...| . +|+.=|...+ ++ .++||+||++|||...
T Consensus 117 G~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~--~~---~~~fD~Iv~npPy~~~~~ 191 (276)
T 2b3t_A 117 GTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--LA---GQQFAMIVSNPPYIDEQD 191 (276)
T ss_dssp TCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG--GT---TCCEEEEEECCCCBCTTC
T ss_pred cCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh--cc---cCCccEEEECCCCCCccc
Confidence 8865333 34444567789999998542 2222 1 4554455433 11 4689999999999764
Q ss_pred -----------------------HHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh---CCcccceeec
Q 025067 184 -----------------------ECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL---GLRPCGFRPQ 230 (258)
Q Consensus 184 -----------------------ec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll---~~~~~~F~P~ 230 (258)
+...++...+..++++ ++.+++..|....+.+.+++ |++.....+.
T Consensus 192 ~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d 263 (276)
T 2b3t_A 192 PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS-GGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD 263 (276)
T ss_dssp HHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE-EEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC
T ss_pred cccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEECchHHHHHHHHHHHCCCcEEEEEec
Confidence 2334455555555666 55788888766666666655 6666555544
No 2
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=96.21 E-value=0.03 Score=51.29 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=57.7
Q ss_pred CCCeEEEEeChhHH--HHHHhhCCCCCceEEeecccc--------cccC--C-ccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRF--------EQYG--S-DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly--~~lk~~~~~~~~~LLEyD~RF--------~~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
++.+|+-|| =+=. ..+....+..+++.+|+|.+- ...| . +|+.-|..++ +|..+.++||+||+|
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~--l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKP--LPDYALHKFDTFITD 248 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSC--CCTTTSSCBSEEEEC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhh--chhhccCCccEEEEC
Confidence 467888886 5433 334344555689999998432 2223 2 5666677654 444345789999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcE-EEech
Q 025067 178 PPYLSKECLEKVSETVSFLARPGDSKL-LLLTG 209 (258)
Q Consensus 178 PPFlseec~eK~A~Tir~L~k~~~~ki-il~Tg 209 (258)
|||.... ..++-..+..++++ ++++ ++++.
T Consensus 249 ~p~~~~~-~~~~l~~~~~~Lkp-gG~~~~~~~~ 279 (373)
T 2qm3_A 249 PPETLEA-IRAFVGRGIATLKG-PRCAGYFGIT 279 (373)
T ss_dssp CCSSHHH-HHHHHHHHHHTBCS-TTCEEEEEEC
T ss_pred CCCchHH-HHHHHHHHHHHccc-CCeEEEEEEe
Confidence 9998765 34444455556666 3443 55544
No 3
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=96.06 E-value=0.019 Score=46.23 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhcC--CCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccccCC----------ccccccCCCCCC
Q 025067 97 AETVAQEAVSLCS--DSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYGS----------DFAFYDYNQPQD 162 (258)
Q Consensus 97 a~~La~~l~~~a~--~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~g~----------~FvfYDyn~P~~ 162 (258)
.+.+++.+++... .++.+|+=|||=+=... +.+..++.+++.+|++...-.... +|+.=|..+|
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-- 91 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEW-- 91 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHH--
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhh--
Confidence 3455555555432 25679998888664443 344456668999999976544321 2332233221
Q ss_pred chh--hhccCccEEEECCCCCCHHHH--------------------------HHHHHHHHHhcCCCCCc-EEEechHHHH
Q 025067 163 LPL--ELKHAFSVVVVDPPYLSKECL--------------------------EKVSETVSFLARPGDSK-LLLLTGEVQK 213 (258)
Q Consensus 163 lp~--~lk~~fD~Vv~DPPFlseec~--------------------------eK~A~Tir~L~k~~~~k-iil~Tg~~me 213 (258)
++. ...++||+|++||||.....+ ..+...+..++++ ++. +++.++....
T Consensus 92 ~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~ 170 (215)
T 4dzr_A 92 LIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR-GRAGVFLEVGHNQA 170 (215)
T ss_dssp HHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS-SSEEEEEECTTSCH
T ss_pred hhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC-CCeEEEEEECCccH
Confidence 111 113789999999999765433 2222333344555 567 6776765555
Q ss_pred HHHHHHh-----CCcccceeecCC
Q 025067 214 ERAAELL-----GLRPCGFRPQHS 232 (258)
Q Consensus 214 ~~i~kll-----~~~~~~F~P~h~ 232 (258)
+.+.+++ |+......+.+.
T Consensus 171 ~~~~~~l~~~~~gf~~~~~~~~~~ 194 (215)
T 4dzr_A 171 DEVARLFAPWRERGFRVRKVKDLR 194 (215)
T ss_dssp HHHHHHTGGGGGGTEECCEEECTT
T ss_pred HHHHHHHHHhhcCCceEEEEEecC
Confidence 5555444 354555555544
No 4
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=95.82 E-value=0.064 Score=44.35 Aligned_cols=127 Identities=18% Similarity=0.108 Sum_probs=70.3
Q ss_pred CCCeEEEEeCh-hHHHHH--HhhCCCCCceEEeeccccc--------ccC--CccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACP-TLYAYL--KKIRPEVSPKILEYDMRFE--------QYG--SDFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstP-Sly~~l--k~~~~~~~~~LLEyD~RF~--------~~g--~~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
++.+|+=|||= +=...+ .+.. ..+++.+|++...- ..| -+|+.=|......++ .++||+||++
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~---~~~fD~I~~n 130 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVV---EGTFDVIFSA 130 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTC---CSCEEEEEEC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcc---cCceeEEEEC
Confidence 67899999998 544433 2222 46899999986532 122 145555543333333 3789999999
Q ss_pred CCCCCH-------------------HHHHHHHHHHHHhcCCCCCcEEEech--HHHHHHHHHHh---CCcccceeecCCC
Q 025067 178 PPYLSK-------------------ECLEKVSETVSFLARPGDSKLLLLTG--EVQKERAAELL---GLRPCGFRPQHSS 233 (258)
Q Consensus 178 PPFlse-------------------ec~eK~A~Tir~L~k~~~~kiil~Tg--~~me~~i~kll---~~~~~~F~P~h~n 233 (258)
|||... +...++...+..++++ +++++++++ ....+.+.+.+ |+.....+....+
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~ 209 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP-GGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT 209 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEE-EEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC-CeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC
Confidence 999642 2235555556666666 457766543 32223333333 6666555544332
Q ss_pred CCCCceeeee
Q 025067 234 KLGNEFRLFT 243 (258)
Q Consensus 234 ~L~Nef~cyt 243 (258)
-..-+..|+
T Consensus 210 -~~~~~l~f~ 218 (230)
T 3evz_A 210 -RWRHSLIFF 218 (230)
T ss_dssp --CEEEEEEE
T ss_pred -eEEEEEEEe
Confidence 233344444
No 5
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.74 E-value=0.051 Score=43.91 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=69.1
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHh-hCCCCCceEEeeccccc--------ccC--C-ccccccCCC
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK-IRPEVSPKILEYDMRFE--------QYG--S-DFAFYDYNQ 159 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~-~~~~~~~~LLEyD~RF~--------~~g--~-~FvfYDyn~ 159 (258)
-++...+.+.+.+......++.+|+=|+|=+=...+.- ..+..+++-+|+|...- ..+ . +|+.-|..
T Consensus 25 ~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~- 103 (189)
T 3p9n_A 25 TTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVA- 103 (189)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHH-
T ss_pred CcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHH-
Confidence 34455566666665532225689999998775554421 13445799999995432 222 1 34444432
Q ss_pred CCCchhhh-ccCccEEEECCCCCCH-HHHHHHHHHHHH--hcCCCCCcEEEech
Q 025067 160 PQDLPLEL-KHAFSVVVVDPPYLSK-ECLEKVSETVSF--LARPGDSKLLLLTG 209 (258)
Q Consensus 160 P~~lp~~l-k~~fD~Vv~DPPFlse-ec~eK~A~Tir~--L~k~~~~kiil~Tg 209 (258)
+++..+ .++||+|++||||... +-+.++...+.. ++++ ++.+++.+.
T Consensus 104 --~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~p-gG~l~~~~~ 154 (189)
T 3p9n_A 104 --AVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTRE-GTVAVVERA 154 (189)
T ss_dssp --HHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCT-TCEEEEEEE
T ss_pred --HHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCC-CeEEEEEec
Confidence 223333 5789999999999972 335666666666 7777 567777664
No 6
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=95.61 E-value=0.11 Score=39.75 Aligned_cols=113 Identities=12% Similarity=-0.023 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHhhc-CCCCCeEEEEeChhHHH--HHHhh-CCCCCceEEeecccccccCC-ccccccCCCCC---Cchh
Q 025067 94 AVTAETVAQEAVSLC-SDSDSRVACIACPTLYA--YLKKI-RPEVSPKILEYDMRFEQYGS-DFAFYDYNQPQ---DLPL 165 (258)
Q Consensus 94 d~Ta~~La~~l~~~a-~~~~~~IaclstPSly~--~lk~~-~~~~~~~LLEyD~RF~~~g~-~FvfYDyn~P~---~lp~ 165 (258)
.+....|.+.+.... ..++.+|+=|||=+=.. .+.+. .++.+++.+|.+. ....+. +|+.-|..... .++.
T Consensus 4 ~r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T 1ej0_A 4 SRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPIVGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp CHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCCTTEEEEESCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccccCcEEEEEcccccchhhhhhhc
Confidence 334444555554432 12567999998865332 33333 3567899999998 544433 56666665421 1222
Q ss_pred hhc-cCccEEEECCCCCCHHH-----------HHHHHHHHHHhcCCCCCcEEEec
Q 025067 166 ELK-HAFSVVVVDPPYLSKEC-----------LEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 166 ~lk-~~fD~Vv~DPPFlseec-----------~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.+. ++||+|++|+|+-...- ..++-..+..++++ ++.+++.+
T Consensus 83 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~~ 136 (180)
T 1ej0_A 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP-GGSFVVKV 136 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC-CcEEEEEE
Confidence 243 68999999999753110 13444445555666 44666543
No 7
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=95.43 E-value=0.014 Score=50.03 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCCCCCceEEeeccccc--------ccC--C--ccccccCCCCC
Q 025067 96 TAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQ 161 (258)
Q Consensus 96 Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF~--------~~g--~--~FvfYDyn~P~ 161 (258)
|-..|...+..... ++.+|+=|||=+=...+. +..+ .+++.+|+|..-. ..| + .|+.-|..+
T Consensus 35 ~d~~ll~~~~~~~~-~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~-- 110 (259)
T 3lpm_A 35 IDAVLLAKFSYLPI-RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKK-- 110 (259)
T ss_dssp HHHHHHHHHCCCCS-SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGG--
T ss_pred HHHHHHHHHhcCCC-CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHH--
Confidence 33445444444320 357899888877665543 2222 3899999985432 122 1 344444432
Q ss_pred Cchhhh-ccCccEEEECCCCCCH--------------------HHHHHHHHHHHHhcCCCCCcEEEech-HHHHHHHHHH
Q 025067 162 DLPLEL-KHAFSVVVVDPPYLSK--------------------ECLEKVSETVSFLARPGDSKLLLLTG-EVQKERAAEL 219 (258)
Q Consensus 162 ~lp~~l-k~~fD~Vv~DPPFlse--------------------ec~eK~A~Tir~L~k~~~~kiil~Tg-~~me~~i~kl 219 (258)
++..+ .++||+||++|||... .-++.+...+..++++ +++++++.+ ....+++..+
T Consensus 111 -~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~l 188 (259)
T 3lpm_A 111 -ITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ-GGKANFVHRPERLLDIIDIM 188 (259)
T ss_dssp -GGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEE-EEEEEEEECTTTHHHHHHHH
T ss_pred -hhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC-CcEEEEEEcHHHHHHHHHHH
Confidence 23333 4789999999999754 2234556666677776 456766654 4444443322
Q ss_pred --hCCcccceeecCCC
Q 025067 220 --LGLRPCGFRPQHSS 233 (258)
Q Consensus 220 --l~~~~~~F~P~h~n 233 (258)
.++.....++-|++
T Consensus 189 ~~~~~~~~~~~~v~~~ 204 (259)
T 3lpm_A 189 RKYRLEPKRIQFVHPR 204 (259)
T ss_dssp HHTTEEEEEEEEEESS
T ss_pred HHCCCceEEEEEeecC
Confidence 26666666666553
No 8
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=95.04 E-value=0.07 Score=41.97 Aligned_cols=110 Identities=13% Similarity=0.184 Sum_probs=64.1
Q ss_pred cChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccc--------cccC-----Cccccc
Q 025067 92 YDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRF--------EQYG-----SDFAFY 155 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF--------~~~g-----~~FvfY 155 (258)
|+..+....++.+++... .++.+|+=|||=+=...+ .+. ..+++.+|++... ...+ -+|+.-
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 109 (194)
T 1dus_A 32 FSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS 109 (194)
T ss_dssp TTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC
T ss_pred CCccccchHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 344433333344443332 156799999887644433 332 5689999998543 2222 123344
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCC-HHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLS-KECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFls-eec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
|..++. + .++||+|+++|||.. .+-...+...+..++++ ++.+++.+.
T Consensus 110 d~~~~~--~---~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~~~ 158 (194)
T 1dus_A 110 DLYENV--K---DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKD-NGEIWVVIQ 158 (194)
T ss_dssp STTTTC--T---TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred chhccc--c---cCCceEEEECCCcccchhHHHHHHHHHHHHcCC-CCEEEEEEC
Confidence 444332 1 467999999999986 44556666666677776 456766655
No 9
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=94.98 E-value=0.32 Score=39.36 Aligned_cols=92 Identities=17% Similarity=0.126 Sum_probs=58.8
Q ss_pred ccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccc--------cC-C-
Q 025067 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQ--------YG-S- 150 (258)
Q Consensus 83 EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~--------~g-~- 150 (258)
..+.+.||.-+...+..++..+......++.+|+=+||=+=...+ .+. ...+++.+|++...-. .| .
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 99 (207)
T 1wy7_A 21 PKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKF 99 (207)
T ss_dssp CCGGGTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSE
T ss_pred cccceeeecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCE
Confidence 467788887778888888877765422256799999886654433 232 2236999999854322 22 1
Q ss_pred ccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
+|+.-|..+ + .++||+||+||||..
T Consensus 100 ~~~~~d~~~---~----~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 100 KVFIGDVSE---F----NSRVDIVIMNPPFGS 124 (207)
T ss_dssp EEEESCGGG---C----CCCCSEEEECCCCSS
T ss_pred EEEECchHH---c----CCCCCEEEEcCCCcc
Confidence 344334322 2 247999999999975
No 10
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=94.57 E-value=0.4 Score=38.42 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccccC-C-ccccccCCCCCCchhhhccCcc
Q 025067 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYG-S-DFAFYDYNQPQDLPLELKHAFS 172 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~g-~-~FvfYDyn~P~~lp~~lk~~fD 172 (258)
...+.|++.+..... ++.+|+=|||=+=+..+.-.... +++-+|++...-... . +|+.=|..+|. +. ++||
T Consensus 8 ~~~~~l~~~l~~~~~-~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~~~~~~~~~~d~~~~~--~~---~~fD 80 (170)
T 3q87_B 8 EDTYTLMDALEREGL-EMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALESHRGGNLVRADLLCSI--NQ---ESVD 80 (170)
T ss_dssp HHHHHHHHHHHHHTC-CSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHTCSSSCEEECSTTTTB--CG---GGCS
T ss_pred ccHHHHHHHHHhhcC-CCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhcccCCeEEECChhhhc--cc---CCCC
Confidence 445666776554222 56799999998866655432223 889999987665432 2 56666766543 22 6899
Q ss_pred EEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEec-hHHHHHHHHHHh---CCcccceeec
Q 025067 173 VVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLLLT-GEVQKERAAELL---GLRPCGFRPQ 230 (258)
Q Consensus 173 ~Vv~DPPFls----------eec~eK~A~Tir~L~k~~~~kiil~T-g~~me~~i~kll---~~~~~~F~P~ 230 (258)
+|+++|||.. .+-..-+.+.++.| + ++.+++++ +....+.+.+++ |++.......
T Consensus 81 ~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--p-gG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 81 VVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV--T-VGMLYLLVIEANRPKEVLARLEERGYGTRILKVR 149 (170)
T ss_dssp EEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC--C-SSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEECCCCccCCccccccCCcchHHHHHHHHhhC--C-CCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEee
Confidence 9999999983 11234445556666 5 45666543 433344444444 6655444443
No 11
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=93.97 E-value=0.099 Score=48.77 Aligned_cols=124 Identities=10% Similarity=0.097 Sum_probs=73.0
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccC--CccccccC
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG--SDFAFYDY 157 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g--~~FvfYDy 157 (258)
|+--+..+..++..+. . . ++.+|+=+||=+=... |.+..++.+++-+|++... ...| -+++.-|.
T Consensus 228 ~~~qd~~s~~~~~~l~-~-~-~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~ 304 (429)
T 1sqg_A 228 VTVQDASAQGCMTWLA-P-Q-NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG 304 (429)
T ss_dssp EEECCHHHHTHHHHHC-C-C-TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT
T ss_pred eEeeCHHHHHHHHHcC-C-C-CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch
Confidence 4445666666666553 2 2 5678988887554433 3333455689999998643 2223 14445554
Q ss_pred CCCCCchhhhc-cCccEEEECCCCCCHHHH----------------------HHHHHHHHHhcCCCCCcEEEec----hH
Q 025067 158 NQPQDLPLELK-HAFSVVVVDPPYLSKECL----------------------EKVSETVSFLARPGDSKLLLLT----GE 210 (258)
Q Consensus 158 n~P~~lp~~lk-~~fD~Vv~DPPFlseec~----------------------eK~A~Tir~L~k~~~~kiil~T----g~ 210 (258)
.. ++..+. ++||+|++|||+.+...+ .++-..+..++|+ +++++.+| ..
T Consensus 305 ~~---~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp-GG~lvystcs~~~~ 380 (429)
T 1sqg_A 305 RY---PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT-GGTLVYATCSVLPE 380 (429)
T ss_dssp TC---THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE-EEEEEEEESCCCGG
T ss_pred hh---chhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCCChh
Confidence 43 344444 679999999999764321 2333333344455 55787765 35
Q ss_pred HHHHHHHHHh
Q 025067 211 VQKERAAELL 220 (258)
Q Consensus 211 ~me~~i~kll 220 (258)
.++..+.+.|
T Consensus 381 ene~~v~~~l 390 (429)
T 1sqg_A 381 ENSLQIKAFL 390 (429)
T ss_dssp GTHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 6677777665
No 12
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=93.84 E-value=0.14 Score=46.12 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=48.0
Q ss_pred CccEEEECCCCCC----------------HHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh-CCcccceeecCC
Q 025067 170 AFSVVVVDPPYLS----------------KECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL-GLRPCGFRPQHS 232 (258)
Q Consensus 170 ~fD~Vv~DPPFls----------------eec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll-~~~~~~F~P~h~ 232 (258)
.-|+|.+||||.. ++=...++..++.|.+. +.++|++-.. .+.+.++| +.++..+.-.+.
T Consensus 187 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~~-g~~~~lS~~d--~~~i~~ly~~~~i~~~~~~~s 263 (284)
T 2dpm_A 187 TGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDT-GAYVMLSNSS--SALVEELYKDFNIHYVEATRT 263 (284)
T ss_dssp TTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTT-TCEEEEEEES--CHHHHHHTTTSEEEEEC----
T ss_pred CCCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCC--CHHHHHHHcCCeEEEEEeEEE
Confidence 4579999999953 22366889999988764 4577776543 47788888 776666655432
Q ss_pred -------CCCCCceeeeeccC
Q 025067 233 -------SKLGNEFRLFTNYG 246 (258)
Q Consensus 233 -------n~L~Nef~cytNye 246 (258)
++-+.|+ +.+||+
T Consensus 264 i~~~~~~r~~~~El-li~Ny~ 283 (284)
T 2dpm_A 264 NGAKSSSRGKISEI-IVTNYE 283 (284)
T ss_dssp --------CCCCEE-EEESCC
T ss_pred EeccCCCCCceeEE-EEEcCC
Confidence 2335677 788885
No 13
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=93.62 E-value=0.061 Score=46.85 Aligned_cols=15 Identities=33% Similarity=0.735 Sum_probs=13.1
Q ss_pred cCccEEEECCCCCCH
Q 025067 169 HAFSVVVVDPPYLSK 183 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (258)
+++|+|++||||...
T Consensus 22 ~~vdlI~~DPPY~~~ 36 (260)
T 1g60_A 22 KSVQLAVIDPPYNLS 36 (260)
T ss_dssp TCEEEEEECCCCSSC
T ss_pred cccCEEEECCCCCCC
Confidence 689999999999754
No 14
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=92.99 E-value=0.25 Score=45.87 Aligned_cols=123 Identities=13% Similarity=0.111 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHhhcC---CCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccC--CccccccCCCC
Q 025067 94 AVTAETVAQEAVSLCS---DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYG--SDFAFYDYNQP 160 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~---~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g--~~FvfYDyn~P 160 (258)
+.+.+.|++.+.+... .++.+|+=|||=+=...+.-...+.+++.+|++... ...+ -+|+.-|..+.
T Consensus 213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~ 292 (381)
T 3dmg_A 213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA 292 (381)
T ss_dssp CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT
T ss_pred CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhc
Confidence 4566777777766431 146799999987654443221124589999998643 2222 25666676543
Q ss_pred CCchhhhccCccEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCCcEEEech--HHHHHHHHHHhC
Q 025067 161 QDLPLELKHAFSVVVVDPPYLS-----KECLEKVSETVSFLARPGDSKLLLLTG--EVQKERAAELLG 221 (258)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPFls-----eec~eK~A~Tir~L~k~~~~kiil~Tg--~~me~~i~kll~ 221 (258)
.. . .++||+||++|||-. .+-...+...+..++++ ++.+++++. ...+..+.+.++
T Consensus 293 ~~--~--~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lkp-GG~l~iv~n~~l~~~~~l~~~f~ 355 (381)
T 3dmg_A 293 LT--E--EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP-GGVFFLVSNPFLKYEPLLEEKFG 355 (381)
T ss_dssp SC--T--TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE-EEEEEEEECTTSCHHHHHHHHHS
T ss_pred cc--c--CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCc-CcEEEEEEcCCCChHHHHHHhhc
Confidence 21 1 368999999999986 44455666666666676 456666543 234566677763
No 15
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=92.81 E-value=0.058 Score=46.72 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=58.5
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cc---cC--C--ccccccCCCCCCchh----hh-c
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQ---YG--S--DFAFYDYNQPQDLPL----EL-K 168 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~---~g--~--~FvfYDyn~P~~lp~----~l-k 168 (258)
++.+|+=|||=+=... +....|..+++.+|+|... .. .| + +|+.=|..+. ++. .+ .
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~--~~~~~~~~~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR--AKARVEAGLPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC--HHHHHHTTCCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH--hhhhhhhccCC
Confidence 4568888887664443 3344566789999999653 22 21 1 3455555543 121 12 4
Q ss_pred cCccEEEECCCCCCHH------------------HHHHHHHHHHHhcCCCCCcEEEechHHH
Q 025067 169 HAFSVVVVDPPYLSKE------------------CLEKVSETVSFLARPGDSKLLLLTGEVQ 212 (258)
Q Consensus 169 ~~fD~Vv~DPPFlsee------------------c~eK~A~Tir~L~k~~~~kiil~Tg~~m 212 (258)
++||+||++|||.... -++.+...+..++++ +++++++.+...
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~ 174 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS-GGQLSLISRPQS 174 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE-EEEEEEEECGGG
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC-CCEEEEEEcHHH
Confidence 6899999999998641 134555666667776 457766666443
No 16
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=92.54 E-value=0.073 Score=51.29 Aligned_cols=125 Identities=17% Similarity=0.114 Sum_probs=68.6
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCC-CCCceEEeeccccc--------ccCC--cccccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRP-EVSPKILEYDMRFE--------QYGS--DFAFYD 156 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~-~~~~~LLEyD~RF~--------~~g~--~FvfYD 156 (258)
+||-.+-+..++-.++.. . ++.+|+=+||=+=...+ ....+ ...++-+|++..-- .+|- .++.-|
T Consensus 82 ~~~vQd~ss~l~a~~L~~-~-~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~D 159 (464)
T 3m6w_A 82 LYYIQEPSAQAVGVLLDP-K-PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAP 159 (464)
T ss_dssp SEEECCTTTHHHHHHHCC-C-TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSC
T ss_pred eEEEECHHHHHHHHhcCc-C-CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECC
Confidence 344444444444444443 2 57899988886544443 22223 35788899885322 2231 222223
Q ss_pred CCCCCCchhhhccCccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEe--ch--H
Q 025067 157 YNQPQDLPLELKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLL--TG--E 210 (258)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPFlseec----------------------~eK~A~Tir~L~k~~~~kiil~--Tg--~ 210 (258)
...++..+.++||+||+|||+.+... +..+-..+..++|+ +++|+.+ |. .
T Consensus 160 ---a~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvysTCs~~~e 235 (464)
T 3m6w_A 160 ---PRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP-GGVLVYSTCTFAPE 235 (464)
T ss_dssp ---HHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE-EEEEEEEESCCCGG
T ss_pred ---HHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeccCchh
Confidence 23355556788999999999854322 12233333334455 4577764 43 5
Q ss_pred HHHHHHHHHh
Q 025067 211 VQKERAAELL 220 (258)
Q Consensus 211 ~me~~i~kll 220 (258)
.+++.+..++
T Consensus 236 Ene~vv~~~l 245 (464)
T 3m6w_A 236 ENEGVVAHFL 245 (464)
T ss_dssp GTHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 6777777766
No 17
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=92.35 E-value=0.46 Score=38.14 Aligned_cols=93 Identities=8% Similarity=0.015 Sum_probs=54.9
Q ss_pred CCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeecccc--------cccC--C--ccccccCCCCCCchhhhccCccEEE
Q 025067 111 SDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (258)
++.+|+=|||=+=...+ .+. .+..+++.+|++... ...| . +|+.-|.. +++..+.++||+|+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ---NMDKYIDCPVKAVM 98 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGG---GGGGTCCSCEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH---HHhhhccCCceEEE
Confidence 56799999887754443 232 355689999998532 2211 1 34444442 34444557899999
Q ss_pred ECCCCCC---------HHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 176 VDPPYLS---------KECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 176 ~DPPFls---------eec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
+||||+. .+...++-..+..++++ +++++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~l~~~ 138 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVT-GGIITVV 138 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcC-CCEEEEE
Confidence 9999943 22333444555555665 4466655
No 18
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=92.29 E-value=0.42 Score=37.95 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccC-C--ccccccCCCCCCchhhh
Q 025067 99 TVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYG-S--DFAFYDYNQPQDLPLEL 167 (258)
Q Consensus 99 ~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g-~--~FvfYDyn~P~~lp~~l 167 (258)
.++..++.....++.+|+=|||=+=+..+.-.....+++-+|++... ...| + +|+. + .-..++...
T Consensus 10 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~--~~~~l~~~~ 86 (185)
T 3mti_A 10 HMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELIL-D--GHENLDHYV 86 (185)
T ss_dssp HHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-S--CGGGGGGTC
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-C--cHHHHHhhc
Confidence 44444444433267899999987766554322125689999998543 2222 1 3333 1 112333334
Q ss_pred ccCccEEEECCCCCCH---------HHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 168 KHAFSVVVVDPPYLSK---------ECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 168 k~~fD~Vv~DPPFlse---------ec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.++||+|++++||+.. +.....-..+..++++ +++++++
T Consensus 87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 134 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV-GGRLAIM 134 (185)
T ss_dssp CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 5789999999988753 3333443445555666 4455543
No 19
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=92.13 E-value=0.42 Score=43.22 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=52.2
Q ss_pred CcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhC-CCCCceEEeecccccccCC--ccccc
Q 025067 81 VSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIR-PEVSPKILEYDMRFEQYGS--DFAFY 155 (258)
Q Consensus 81 ~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~-~~~~~~LLEyD~RF~~~g~--~FvfY 155 (258)
..+.....||+-.+.-++.+++.+.. . ...+|+=+||=|=...+ .+.. +..+++-+|+|..-..... +++.=
T Consensus 12 ~~~~~~~g~~~TP~~l~~~~~~~~~~--~-~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~ 88 (421)
T 2ih2_A 12 NSAPRSLGRVETPPEVVDFMVSLAEA--P-RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILA 88 (421)
T ss_dssp ---------CCCCHHHHHHHHHHCCC--C-TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEES
T ss_pred hhhcccCceEeCCHHHHHHHHHhhcc--C-CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeC
Confidence 34556677888776666666665532 1 45689888887644333 3222 4568999999976644321 33333
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCC
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
|+.... ..++||+||+.|||..
T Consensus 89 D~~~~~-----~~~~fD~Ii~NPPy~~ 110 (421)
T 2ih2_A 89 DFLLWE-----PGEAFDLILGNPPYGI 110 (421)
T ss_dssp CGGGCC-----CSSCEEEEEECCCCCC
T ss_pred ChhhcC-----ccCCCCEEEECcCccC
Confidence 332211 1367999999999975
No 20
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=92.13 E-value=0.72 Score=40.66 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhcC-CCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccC--C--ccccccCCCCC
Q 025067 97 AETVAQEAVSLCS-DSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQ 161 (258)
Q Consensus 97 a~~La~~l~~~a~-~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDyn~P~ 161 (258)
.+.|++.+++... .++.+|+=|||=|=... +.+. |..+++.+|++..- ...| + +|+.=|...+
T Consensus 108 te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~- 185 (284)
T 1nv8_A 108 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP- 185 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-
T ss_pred HHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-
Confidence 3445555544321 14568998888765544 4444 67789999998432 2222 1 4555555443
Q ss_pred CchhhhccCc---cEEEECCCCCCHHH--------------------HHHHHHHHHHhcCCCCCcEEEechHHHHHHHHH
Q 025067 162 DLPLELKHAF---SVVVVDPPYLSKEC--------------------LEKVSETVSFLARPGDSKLLLLTGEVQKERAAE 218 (258)
Q Consensus 162 ~lp~~lk~~f---D~Vv~DPPFlseec--------------------~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~k 218 (258)
+.++| |+||++|||....- +.-+.+.+..++++ ++.+++.+|....+.+.+
T Consensus 186 -----~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~p-gG~l~~e~~~~q~~~v~~ 259 (284)
T 1nv8_A 186 -----FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTS-GKIVLMEIGEDQVEELKK 259 (284)
T ss_dssp -----GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCT-TCEEEEECCTTCHHHHTT
T ss_pred -----cccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCC-CCEEEEEECchHHHHHHH
Confidence 22468 99999999986421 11122223034455 568999999887777777
Q ss_pred Hh
Q 025067 219 LL 220 (258)
Q Consensus 219 ll 220 (258)
++
T Consensus 260 ~~ 261 (284)
T 1nv8_A 260 IV 261 (284)
T ss_dssp TS
T ss_pred HH
Confidence 77
No 21
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=92.06 E-value=0.23 Score=44.65 Aligned_cols=129 Identities=17% Similarity=0.053 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhhcCC-CCCeEEEEeChhHHHHHH--hhC-CCCCceEEeeccccc--------ccC--C-ccccccCCC
Q 025067 95 VTAETVAQEAVSLCSD-SDSRVACIACPTLYAYLK--KIR-PEVSPKILEYDMRFE--------QYG--S-DFAFYDYNQ 159 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~~-~~~~IaclstPSly~~lk--~~~-~~~~~~LLEyD~RF~--------~~g--~-~FvfYDyn~ 159 (258)
.....|+..++..+.. ++.+|+=++|=|=...+. ... +..+++-.|+|.+.- ..| . +|+.-|..+
T Consensus 186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~ 265 (354)
T 3tma_A 186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARH 265 (354)
T ss_dssp SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGG
T ss_pred CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhh
Confidence 3445677777776542 466887777665444332 223 567899999996432 223 1 455555432
Q ss_pred CCCchhhhccCccEEEECCCCCCHHH--------HHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHH--hCCcccceee
Q 025067 160 PQDLPLELKHAFSVVVVDPPYLSKEC--------LEKVSETVSFLARPGDSKLLLLTGEVQKERAAEL--LGLRPCGFRP 229 (258)
Q Consensus 160 P~~lp~~lk~~fD~Vv~DPPFlseec--------~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kl--l~~~~~~F~P 229 (258)
++.. ...||+||+||||+.+-- ...+...++.++++ +.+++++|+. .+++.++ +|.+...-++
T Consensus 266 ---~~~~-~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp-gG~l~i~t~~--~~~~~~~~~~g~~~~~~~~ 338 (354)
T 3tma_A 266 ---LPRF-FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP-GGRVALLTLR--PALLKRALPPGFALRHARV 338 (354)
T ss_dssp ---GGGT-CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT-TCEEEEEESC--HHHHHHHCCTTEEEEEEEE
T ss_pred ---Cccc-cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC-CcEEEEEeCC--HHHHHHHhhcCcEEEEEEE
Confidence 2222 245899999999985421 14555666777776 5678887763 2333333 4554444333
Q ss_pred c
Q 025067 230 Q 230 (258)
Q Consensus 230 ~ 230 (258)
-
T Consensus 339 l 339 (354)
T 3tma_A 339 V 339 (354)
T ss_dssp C
T ss_pred E
Confidence 3
No 22
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=92.05 E-value=0.078 Score=41.17 Aligned_cols=108 Identities=14% Similarity=0.038 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeeccccc--------ccC-C-ccccccCCCCC
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFE--------QYG-S-DFAFYDYNQPQ 161 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~--------~~g-~-~FvfYDyn~P~ 161 (258)
+...+.+.+.+..... ++.+|+=++|=+=...+ .+.. .+++.+|++...- ..+ . +|+.-|..+
T Consensus 25 ~~~~~~~~~~~~~~~~-~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-- 99 (171)
T 1ws6_A 25 VRLRKALFDYLRLRYP-RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV-- 99 (171)
T ss_dssp HHHHHHHHHHHHHHCT-TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH--
T ss_pred HHHHHHHHHHHHhhcc-CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHH--
Confidence 3344445555443221 45789999887654433 3323 3499999986432 122 1 333333221
Q ss_pred Cchhhhc---cCccEEEECCCCCCHHHHHHHHHHHH--HhcCCCCCcEEEechH
Q 025067 162 DLPLELK---HAFSVVVVDPPYLSKECLEKVSETVS--FLARPGDSKLLLLTGE 210 (258)
Q Consensus 162 ~lp~~lk---~~fD~Vv~DPPFlseec~eK~A~Tir--~L~k~~~~kiil~Tg~ 210 (258)
....+. .+||+|++||||. .....+...+. .++++ ++.++++++.
T Consensus 100 -~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~-gG~~~~~~~~ 149 (171)
T 1ws6_A 100 -FLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEA-GGLYVLQHPK 149 (171)
T ss_dssp -HHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEE-EEEEEEEEET
T ss_pred -HHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCC-CcEEEEEeCC
Confidence 111221 3799999999996 22344444444 45555 4567777763
No 23
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=91.89 E-value=0.35 Score=46.44 Aligned_cols=127 Identities=14% Similarity=0.155 Sum_probs=71.7
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhC-CCCCceEEeecccc--------cccC--C-ccccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIR-PEVSPKILEYDMRF--------EQYG--S-DFAFY 155 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~-~~~~~~LLEyD~RF--------~~~g--~-~FvfY 155 (258)
.+|-.+-+..++-.++.....++.+|+=+||=+=...+. ... ++..++-+|++..- +..| . .++..
T Consensus 96 ~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~ 175 (479)
T 2frx_A 96 LFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHF 175 (479)
T ss_dssp SEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred EEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 445444445554444444211467999888876554432 322 34578889988542 2223 1 34555
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCCHHH----------------------HHHHHHHHHHhcCCCCCcEEEech----
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKEC----------------------LEKVSETVSFLARPGDSKLLLLTG---- 209 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec----------------------~eK~A~Tir~L~k~~~~kiil~Tg---- 209 (258)
|.. .++..+.++||+||+|||+.+... +.++-..+..++|+ +++|+.+|-
T Consensus 176 D~~---~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~LvysTcs~~~ 251 (479)
T 2frx_A 176 DGR---VFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP-GGTLVYSTCTLNQ 251 (479)
T ss_dssp CST---THHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESCCSS
T ss_pred CHH---HhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC-CCEEEEecccCCc
Confidence 543 344445678999999999854321 22333334445565 457877654
Q ss_pred HHHHHHHHHHh
Q 025067 210 EVQKERAAELL 220 (258)
Q Consensus 210 ~~me~~i~kll 220 (258)
..+++.+..+|
T Consensus 252 ~Ene~vv~~~l 262 (479)
T 2frx_A 252 EENEAVCLWLK 262 (479)
T ss_dssp TTTHHHHHHHH
T ss_pred ccCHHHHHHHH
Confidence 45666666655
No 24
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=91.02 E-value=0.33 Score=45.62 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=68.5
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCC-CCceEEeecccc--------cccC--C-ccccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPE-VSPKILEYDMRF--------EQYG--S-DFAFY 155 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~-~~~~LLEyD~RF--------~~~g--~-~FvfY 155 (258)
||--|..+..++..+ .. . ++.+|+=+||=+=... |....++ .+++-+|++..- ..+| . .++.-
T Consensus 241 ~~~qd~~s~l~~~~l-~~-~-~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~ 317 (450)
T 2yxl_A 241 IIVQEEASAVASIVL-DP-K-PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVK 317 (450)
T ss_dssp EEECCHHHHHHHHHH-CC-C-TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEecCchhHHHHHhc-CC-C-CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEc
Confidence 344455555444443 33 2 5678988887554433 3333343 578999988532 2223 1 45555
Q ss_pred cCCCCCCchhhhc-cCccEEEECCCCCCHHHH----------------------HHHHHHHHHhcCCCCCcEEEec--h-
Q 025067 156 DYNQPQDLPLELK-HAFSVVVVDPPYLSKECL----------------------EKVSETVSFLARPGDSKLLLLT--G- 209 (258)
Q Consensus 156 Dyn~P~~lp~~lk-~~fD~Vv~DPPFlseec~----------------------eK~A~Tir~L~k~~~~kiil~T--g- 209 (258)
|... ++..+. ++||+||+|||+.+...+ ..+-..+..++|+ +++++.+| .
T Consensus 318 D~~~---~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~lvy~tcs~~ 393 (450)
T 2yxl_A 318 DARK---APEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP-GGRLLYTTCSIF 393 (450)
T ss_dssp CTTC---CSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE-EEEEEEEESCCC
T ss_pred Chhh---cchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCC
Confidence 5543 233344 679999999999654321 2333334444455 45676644 3
Q ss_pred -HHHHHHHHHHh
Q 025067 210 -EVQKERAAELL 220 (258)
Q Consensus 210 -~~me~~i~kll 220 (258)
..++..+.+.|
T Consensus 394 ~~ene~~v~~~l 405 (450)
T 2yxl_A 394 KEENEKNIRWFL 405 (450)
T ss_dssp GGGTHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 44666666665
No 25
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=90.94 E-value=0.12 Score=46.79 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=25.4
Q ss_pred ccCccEEEECCCCCCH--------------HHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 168 KHAFSVVVVDPPYLSK--------------ECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 168 k~~fD~Vv~DPPFlse--------------ec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.+++|+|++||||... +-+.+....++.++++ ++.|++..+
T Consensus 31 ~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~-~G~i~i~~~ 85 (323)
T 1boo_A 31 EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKP-DGSFVVDFG 85 (323)
T ss_dssp SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEEC
T ss_pred CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcC-CcEEEEEEC
Confidence 3689999999999764 1123333444555665 345666554
No 26
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=89.98 E-value=1.6 Score=35.14 Aligned_cols=93 Identities=16% Similarity=0.052 Sum_probs=52.5
Q ss_pred ccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccccC------Ccccc
Q 025067 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQYG------SDFAF 154 (258)
Q Consensus 83 EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~~g------~~Fvf 154 (258)
..+.+.||-=....+..++..+......++.+|+=|||=+=...+ .+ .+..+++-+|++...-... -+|+.
T Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 101 (200)
T 1ne2_A 23 FKNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYL-LGAESVTAFDIDPDAIETAKRNCGGVNFMV 101 (200)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHH-TTBSEEEEEESCHHHHHHHHHHCTTSEEEE
T ss_pred cccceeecCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHH-cCCCEEEEEECCHHHHHHHHHhcCCCEEEE
Confidence 456677777777777888877665422256799999887655443 33 2334699999986543221 13333
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
=|... + .++||+||+||||...
T Consensus 102 ~d~~~---~----~~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 102 ADVSE---I----SGKYDTWIMNPPFGSV 123 (200)
T ss_dssp CCGGG---C----CCCEEEEEECCCC---
T ss_pred CcHHH---C----CCCeeEEEECCCchhc
Confidence 33322 2 2689999999999754
No 27
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=89.81 E-value=0.16 Score=45.05 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=12.5
Q ss_pred cCccEEEECCCCCC
Q 025067 169 HAFSVVVVDPPYLS 182 (258)
Q Consensus 169 ~~fD~Vv~DPPFls 182 (258)
++||+||+||||..
T Consensus 39 ~s~DlIvtdPPY~~ 52 (297)
T 2zig_A 39 ASVHLVVTSPPYWT 52 (297)
T ss_dssp TCEEEEEECCCCCC
T ss_pred CceeEEEECCCCCC
Confidence 68999999999974
No 28
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=89.58 E-value=0.59 Score=43.59 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=37.4
Q ss_pred cCccEEEECCCCCCH-----HHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeecCCCCCCCceeee
Q 025067 169 HAFSVVVVDPPYLSK-----ECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKLGNEFRLF 242 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse-----ec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~n~L~Nef~cy 242 (258)
.+||+||+||||+.+ +...-+..--+.|.+-.+.++.+.|+. .-+.+.+|++...=.+-+..+| +.++|
T Consensus 306 ~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~---~~l~~~~g~~~~~~~~l~nG~l--~~~~~ 379 (393)
T 3k0b_A 306 DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY---ELFEEVYGKKATKKRKLYNGYL--RTDLY 379 (393)
T ss_dssp CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC---TTHHHHHTSCCSEEEEEC------CEEEE
T ss_pred CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC---HHHHHHhCCCcccceEEecCCE--EEEEE
Confidence 479999999999864 111112222223332224578778872 2256778988765555543344 34444
No 29
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=89.35 E-value=3.2 Score=34.09 Aligned_cols=152 Identities=13% Similarity=0.013 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccccCCccccccCCCCCC---chhhhc-
Q 025067 94 AVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQD---LPLELK- 168 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~g~~FvfYDyn~P~~---lp~~lk- 168 (258)
.+.+-.|.+.+.+... .++.+|+=|||=+=...+.-.....+++-+|++..-..-+-.|+.=|..++.. +...+.
T Consensus 7 ~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 7 SRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp SHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 4556667766665521 25789999988654433322111457888888764211122677778776532 112233
Q ss_pred ---cCccEEEECCCCCCH-----------HHHHHHHHHHHHhcCCCCCcEEEec--hHHHHHHHHHHh--CC-cccceee
Q 025067 169 ---HAFSVVVVDPPYLSK-----------ECLEKVSETVSFLARPGDSKLLLLT--GEVQKERAAELL--GL-RPCGFRP 229 (258)
Q Consensus 169 ---~~fD~Vv~DPPFlse-----------ec~eK~A~Tir~L~k~~~~kiil~T--g~~me~~i~kll--~~-~~~~F~P 229 (258)
++||+||+|||.-.. +.++.+...+..++++ ++++++.+ |..... +.+.| .+ +...++|
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp-GG~lv~k~~~~~~~~~-~~~~l~~~F~~v~~~kP 164 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN-GGNVLLKQFQGDMTND-FIAIWRKNFSSYKISKP 164 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEEECSTHHHH-HHHHHGGGEEEEEEECC
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC-CCEEEEEEcCCCCHHH-HHHHHHHhcCEEEEECC
Confidence 589999999875321 1123333445556666 34544322 333233 33333 12 2345678
Q ss_pred cCCCCCCCceeeee-ccCC
Q 025067 230 QHSSKLGNEFRLFT-NYGP 247 (258)
Q Consensus 230 ~h~n~L~Nef~cyt-Nye~ 247 (258)
...+.-+.|+++-+ ||..
T Consensus 165 ~asR~~s~E~y~v~~~~~~ 183 (191)
T 3dou_A 165 PASRGSSSEIYIMFFGFKA 183 (191)
T ss_dssp ------CCEEEEEEEEECC
T ss_pred CCccCCCceEEEEEeeecc
Confidence 87776677766543 5543
No 30
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=89.13 E-value=0.41 Score=45.96 Aligned_cols=125 Identities=16% Similarity=0.103 Sum_probs=69.4
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hh-CCCCCceEEeecccc--------cccC-C--cccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDMRF--------EQYG-S--DFAF 154 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~RF--------~~~g-~--~Fvf 154 (258)
.|+--|.++..++..+ .. . ++.+|+=+||=+=...+. .. .....++-+|+|..- +..| . .++.
T Consensus 86 ~~~vQd~ss~l~~~~L-~~-~-~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~ 162 (456)
T 3m4x_A 86 YEYSQEPSAMIVGTAA-AA-K-PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN 162 (456)
T ss_dssp SCEECCTTTHHHHHHH-CC-C-TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC
T ss_pred cEEEECHHHHHHHHHc-CC-C-CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe
Confidence 3444455555555444 33 2 578999888865444432 22 233578889998532 1223 1 2233
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCCHHH---------------H-------HHHHHHHHHhcCCCCCcEEEec--h-
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSKEC---------------L-------EKVSETVSFLARPGDSKLLLLT--G- 209 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlseec---------------~-------eK~A~Tir~L~k~~~~kiil~T--g- 209 (258)
-| +..++..+.++||+||+|||..+... + .++-..+..++|+ ++.|+.+| .
T Consensus 163 ~D---a~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTCs~~ 238 (456)
T 3m4x_A 163 HA---PAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN-KGQLIYSTCTFA 238 (456)
T ss_dssp CC---HHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE-EEEEEEEESCCC
T ss_pred CC---HHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEEeecc
Confidence 33 23344456688999999999654321 1 1233333344455 45677644 3
Q ss_pred -HHHHHHHHHHh
Q 025067 210 -EVQKERAAELL 220 (258)
Q Consensus 210 -~~me~~i~kll 220 (258)
+.+++.|..++
T Consensus 239 ~eEne~vv~~~l 250 (456)
T 3m4x_A 239 PEENEEIISWLV 250 (456)
T ss_dssp GGGTHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 66788887776
No 31
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=89.13 E-value=4.7 Score=37.53 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccC--C-ccccccCCCCCC
Q 025067 95 VTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYG--S-DFAFYDYNQPQD 162 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g--~-~FvfYDyn~P~~ 162 (258)
.-.+.|++.+++... .++.+|+=|+|=+=...+.-..-..+++-+|++... ...| . +|+.=|..+...
T Consensus 269 ~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhh
Confidence 335566666666543 246789888887655443321124578999998532 2222 1 455556554321
Q ss_pred -chhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEE--EechHHHHHHHHHHh
Q 025067 163 -LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLL--LLTGEVQKERAAELL 220 (258)
Q Consensus 163 -lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kii--l~Tg~~me~~i~kll 220 (258)
+| .-.++||+||+|||+.+.+ .+...+..+. + .+|+ .|....+..-+..+.
T Consensus 349 ~~~-~~~~~fD~Vv~dPPr~g~~---~~~~~l~~~~-p--~~ivyvsc~p~tlard~~~l~ 402 (433)
T 1uwv_A 349 KQP-WAKNGFDKVLLDPARAGAA---GVMQQIIKLE-P--IRIVYVSCNPATLARDSEALL 402 (433)
T ss_dssp SSG-GGTTCCSEEEECCCTTCCH---HHHHHHHHHC-C--SEEEEEESCHHHHHHHHHHHH
T ss_pred hhh-hhcCCCCEEEECCCCccHH---HHHHHHHhcC-C--CeEEEEECChHHHHhhHHHHH
Confidence 11 1235799999999998642 2333333332 3 2554 576666555555444
No 32
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=88.85 E-value=0.14 Score=44.62 Aligned_cols=124 Identities=13% Similarity=0.091 Sum_probs=68.3
Q ss_pred ccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCC-CCceEEeecccc--------cccC--C-cccccc
Q 025067 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPE-VSPKILEYDMRF--------EQYG--S-DFAFYD 156 (258)
Q Consensus 91 WYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~-~~~~LLEyD~RF--------~~~g--~-~FvfYD 156 (258)
||-.+-+..++-.++.. . ++.+|+=+||=+=... |.+..++ .+++-+|++..- ...| . +++.-|
T Consensus 65 ~~~qd~~s~l~~~~l~~-~-~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D 142 (274)
T 3ajd_A 65 YMPQSISSMIPPIVLNP-R-EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINAD 142 (274)
T ss_dssp EEECCSGGGHHHHHHCC-C-TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred EEEeCHHHHHHHHHhCC-C-CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34433344444444443 2 5678988887655444 3333343 689999998543 2222 1 333334
Q ss_pred CCCCCCchhhh---ccCccEEEECCCCCCHHH------------------HHHHHHHHHHhcCCCCCcEEEech----HH
Q 025067 157 YNQPQDLPLEL---KHAFSVVVVDPPYLSKEC------------------LEKVSETVSFLARPGDSKLLLLTG----EV 211 (258)
Q Consensus 157 yn~P~~lp~~l---k~~fD~Vv~DPPFlseec------------------~eK~A~Tir~L~k~~~~kiil~Tg----~~ 211 (258)
.. +++..+ .++||+|++|||+.+... +.++-..+..++|+ +++++.+|- ..
T Consensus 143 ~~---~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~stcs~~~~e 218 (274)
T 3ajd_A 143 MR---KYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK-DGELVYSTCSMEVEE 218 (274)
T ss_dssp HH---HHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE-EEEEEEEESCCCTTS
T ss_pred hH---hcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEECCCChHH
Confidence 32 233332 468999999999976322 24444545556666 457777543 35
Q ss_pred HHHHHHHHh
Q 025067 212 QKERAAELL 220 (258)
Q Consensus 212 me~~i~kll 220 (258)
++..+.+.+
T Consensus 219 ne~~v~~~l 227 (274)
T 3ajd_A 219 NEEVIKYIL 227 (274)
T ss_dssp SHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 667777665
No 33
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=88.85 E-value=1.1 Score=40.04 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=67.6
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhC-CCCCceEEeecccc--------cccC--C-ccccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIR-PEVSPKILEYDMRF--------EQYG--S-DFAFY 155 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~-~~~~~~LLEyD~RF--------~~~g--~-~FvfY 155 (258)
|+--|..+..++.. +.. . ++.+|+=+||=+=... |.+.. +..+++-+|++... ...| . +|+.-
T Consensus 100 ~~~qd~~s~l~~~~-l~~-~-~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~ 176 (315)
T 1ixk_A 100 IYIQEASSMYPPVA-LDP-K-PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS 176 (315)
T ss_dssp EEECCHHHHHHHHH-HCC-C-TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS
T ss_pred EEEeCHHHHHHHHH-hCC-C-CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 44445555544444 433 2 5678998887554433 33332 34578999998542 2223 1 34444
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCCHH----------------------HHHHHHHHHHHhcCCCCCcEEEech----
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKE----------------------CLEKVSETVSFLARPGDSKLLLLTG---- 209 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlsee----------------------c~eK~A~Tir~L~k~~~~kiil~Tg---- 209 (258)
|... ++. +.++||+|++|||.-+.. -+.++-..+..++|+ +++++++|-
T Consensus 177 D~~~---~~~-~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp-GG~lv~stcs~~~ 251 (315)
T 1ixk_A 177 SSLH---IGE-LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP-GGILVYSTCSLEP 251 (315)
T ss_dssp CGGG---GGG-GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESCCCG
T ss_pred Chhh---ccc-ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEeCCCCh
Confidence 4432 222 356899999999964311 112343444455565 457777543
Q ss_pred HHHHHHHHHHh
Q 025067 210 EVQKERAAELL 220 (258)
Q Consensus 210 ~~me~~i~kll 220 (258)
..++..+...+
T Consensus 252 ~Ene~~v~~~l 262 (315)
T 1ixk_A 252 EENEFVIQWAL 262 (315)
T ss_dssp GGTHHHHHHHH
T ss_pred HHhHHHHHHHH
Confidence 46667666665
No 34
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=88.39 E-value=0.71 Score=37.45 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=72.2
Q ss_pred ccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccCC-ccc
Q 025067 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYGS-DFA 153 (258)
Q Consensus 83 EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g~-~Fv 153 (258)
.-|...+-||..+....+...+.... +..+|+=|||=+=...+.-.....+++.+|++... ...+. +|+
T Consensus 25 ~~w~~~~~~~~~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~ 102 (216)
T 3ofk_A 25 DPWRLDDNPFERERHTQLLRLSLSSG--AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWA 102 (216)
T ss_dssp SGGGTTTCHHHHHHHHHHHHHHTTTS--SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEE
T ss_pred CCcccccCHhHHHHHHHHHHHHcccC--CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEE
Confidence 46888889998866666555544331 46789999987755543321112478999998532 22222 455
Q ss_pred cccCCCCCCchhhhccCccEEEECCCCC---CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 154 FYDYNQPQDLPLELKHAFSVVVVDPPYL---SKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPPFl---seec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.-|..+.. ..++||+|++-..+- ..+-+.++-..+..++++ ++.+++++
T Consensus 103 ~~d~~~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 154 (216)
T 3ofk_A 103 ATDILQFS-----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAP-GGHLVFGS 154 (216)
T ss_dssp ECCTTTCC-----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred EcchhhCC-----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCC-CCEEEEEe
Confidence 55654432 247899999975542 233345556666667776 45677755
No 35
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=88.37 E-value=0.97 Score=39.60 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=71.6
Q ss_pred HHHHHHHhhcC----CCCCeEEEEeChhHHHHHH--hh-CCCCCceEEeecccccc--------cCC-ccccccCCCCCC
Q 025067 99 TVAQEAVSLCS----DSDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDMRFEQ--------YGS-DFAFYDYNQPQD 162 (258)
Q Consensus 99 ~La~~l~~~a~----~~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~RF~~--------~g~-~FvfYDyn~P~~ 162 (258)
.||..|+.+.. .++.+|+-|||=+=+.... +. .|+.+++-+|+..+.-. .+. .++..|-..|..
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~ 140 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEK 140 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGG
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccc
Confidence 45666655432 3789999999988655543 33 57778999999866532 233 577888888876
Q ss_pred chhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 163 LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.+ .+..++|+|++|.|+-.. ...+..-++..+|+ +++++++
T Consensus 141 ~~-~~~~~vDvVf~d~~~~~~--~~~~l~~~~r~LKp-GG~lvI~ 181 (233)
T 4df3_A 141 YR-HLVEGVDGLYADVAQPEQ--AAIVVRNARFFLRD-GGYMLMA 181 (233)
T ss_dssp GT-TTCCCEEEEEECCCCTTH--HHHHHHHHHHHEEE-EEEEEEE
T ss_pred cc-cccceEEEEEEeccCChh--HHHHHHHHHHhccC-CCEEEEE
Confidence 44 345689999999998754 45555556667777 4566654
No 36
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=88.17 E-value=0.54 Score=43.86 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=37.3
Q ss_pred cCccEEEECCCCCCH----HHHHHHHHH-HHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeecCCCCC
Q 025067 169 HAFSVVVVDPPYLSK----ECLEKVSET-VSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKL 235 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse----ec~eK~A~T-ir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~n~L 235 (258)
.+||+||+||||+.+ +=+..+-.. .+.|.+-.+.++.+.|+. .-+.+.+|++...=.+-+..+|
T Consensus 299 ~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~---~~l~~~~g~~~~~~~~l~nG~l 367 (384)
T 3ldg_A 299 KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND---TDFEQKFGRKADKKRKLYNGSL 367 (384)
T ss_dssp CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC---TTHHHHHTSCCSEEEEEEETTE
T ss_pred CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC---HHHHHHhCCCccceeEEecCCE
Confidence 479999999999742 223332222 233333224578888872 2256778988765555443334
No 37
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=88.04 E-value=0.24 Score=46.31 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=49.3
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC--CccccccCCC
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG--SDFAFYDYNQ 159 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g--~~FvfYDyn~ 159 (258)
||++..-.+.++.. .+. ++.+|+=++|=|=...+.-...+.+++-+|++..-- ..| ..|..-|..
T Consensus 197 ~f~dqr~~r~~l~~---~~~-~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~- 271 (393)
T 4dmg_A 197 YYLDQRENRRLFEA---MVR-PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEAL- 271 (393)
T ss_dssp SCGGGHHHHHHHHT---TCC-TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHH-
T ss_pred cCCCHHHHHHHHHH---Hhc-CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHH-
Confidence 66665555444333 332 478999999988666654321233488999986432 122 123322211
Q ss_pred CCCchhhhccCccEEEECCCCCC
Q 025067 160 PQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 160 P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
++...+.+.||+||+|||+..
T Consensus 272 --~~l~~~~~~fD~Ii~dpP~f~ 292 (393)
T 4dmg_A 272 --PTLRGLEGPFHHVLLDPPTLV 292 (393)
T ss_dssp --HHHHTCCCCEEEEEECCCCCC
T ss_pred --HHHHHhcCCCCEEEECCCcCC
Confidence 122233556999999999855
No 38
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=87.92 E-value=0.61 Score=42.02 Aligned_cols=101 Identities=6% Similarity=0.002 Sum_probs=57.4
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC--C--ccccccC
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDY 157 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g--~--~FvfYDy 157 (258)
||+...-.+++ .+..... ++.+|+=++|=+=...+. .....+++-+|.+..-- ..| + +|+.-|.
T Consensus 177 ~~~~~~~~er~--~i~~~~~-~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~ 252 (336)
T 2yx1_A 177 YFSPRLGGERA--RIMKKVS-LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV 252 (336)
T ss_dssp CCCGGGHHHHH--HHHHHCC-TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCG
T ss_pred ccCCccHHHHH--HHHHhcC-CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCh
Confidence 45444444444 2334433 567899888887777766 44456789999985321 111 1 2333333
Q ss_pred CCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 158 NQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
.+. + ++||+||+|||+...+.+ ....+.| ++ ++.+++
T Consensus 253 ~~~------~-~~fD~Vi~dpP~~~~~~l---~~~~~~L-~~-gG~l~~ 289 (336)
T 2yx1_A 253 REV------D-VKGNRVIMNLPKFAHKFI---DKALDIV-EE-GGVIHY 289 (336)
T ss_dssp GGC------C-CCEEEEEECCTTTGGGGH---HHHHHHE-EE-EEEEEE
T ss_pred HHh------c-CCCcEEEECCcHhHHHHH---HHHHHHc-CC-CCEEEE
Confidence 221 1 679999999998876433 2334444 44 334544
No 39
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=87.58 E-value=2.1 Score=34.25 Aligned_cols=117 Identities=11% Similarity=0.048 Sum_probs=69.8
Q ss_pred cccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccC-C-ccc
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYG-S-DFA 153 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g-~-~Fv 153 (258)
-|+..++||+......|.+.+.... ++ +|+=|||=+=...+.-...+.+++.+|++... ...+ . .|+
T Consensus 5 ~y~~~~~~~~~~~~~~l~~~~~~~~--~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~ 81 (202)
T 2kw5_A 5 RFSQSEYVYGTEPNDFLVSVANQIP--QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTV 81 (202)
T ss_dssp CCCCCCCCCCCCCCSSHHHHHHHSC--SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhcccchhhccCchHHHHHHHHhCC--CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEE
Confidence 3455668888877777777665552 34 99999986543332211124588999988532 2222 1 344
Q ss_pred cccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 154 FYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.-|.... .++ .++||+|++-......+-..++-..+..++++ ++.+++.+
T Consensus 82 ~~d~~~~-~~~---~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 131 (202)
T 2kw5_A 82 QSNLADF-DIV---ADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKP-GGVFILEG 131 (202)
T ss_dssp CCBTTTB-SCC---TTTCSEEEEECCCCCHHHHHHHHHHHHTTCCS-SEEEEEEE
T ss_pred EcChhhc-CCC---cCCccEEEEEhhcCCHHHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 4454332 111 36799998866666555556666667777777 45676664
No 40
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=87.41 E-value=1.9 Score=34.86 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEEEeChhHHH--HHHhhCCCCCceEEeecccc--------cccCC--ccccccCCCCCC
Q 025067 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYGS--DFAFYDYNQPQD 162 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF--------~~~g~--~FvfYDyn~P~~ 162 (258)
...+.+.+.+.+... +..+|+=|||=+=.. .+.+..+ +++.+|++... ...+. +|+.-|..+. .
T Consensus 23 ~~~~~~~~~l~~~~~-~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~ 98 (227)
T 1ve3_A 23 SRIETLEPLLMKYMK-KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-S 98 (227)
T ss_dssp HHHHHHHHHHHHSCC-SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-C
T ss_pred HHHHHHHHHHHHhcC-CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC-C
Confidence 456777777777765 578999998865333 3333333 89999998533 22222 5666665441 1
Q ss_pred chhhhccCccEEEECCC--CCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 163 LPLELKHAFSVVVVDPP--YLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 163 lp~~lk~~fD~Vv~DPP--Flseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
++ .++||+|++.+| +...+-..++-..++.++++ ++++++.+.
T Consensus 99 ~~---~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~~~ 143 (227)
T 1ve3_A 99 FE---DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP-SGKFIMYFT 143 (227)
T ss_dssp SC---TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred CC---CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCC-CcEEEEEec
Confidence 11 368999999999 77754445555666666776 457777654
No 41
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=87.40 E-value=1.5 Score=36.34 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=63.4
Q ss_pred ccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccC--C--cccccc
Q 025067 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYD 156 (258)
Q Consensus 91 WYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYD 156 (258)
.....+...|...+... ++.+|+-|||=+=+.. +.+..|+.+++.+|++... ...| . .|+.-|
T Consensus 37 ~~~~~~~~~l~~~~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 113 (233)
T 2gpy_A 37 IMDLLGMESLLHLLKMA---APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGD 113 (233)
T ss_dssp CCCHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC
T ss_pred CcCHHHHHHHHHHHhcc---CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 45666666666665444 5679999998765544 3334566789999998543 2222 1 233333
Q ss_pred CCCCCCchhhh--ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 157 YNQPQDLPLEL--KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 157 yn~P~~lp~~l--k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.. +....+ .++||+|++|+|.... .++-..+..++++ ++.|++.
T Consensus 114 ~~---~~~~~~~~~~~fD~I~~~~~~~~~---~~~l~~~~~~L~p-gG~lv~~ 159 (233)
T 2gpy_A 114 AL---QLGEKLELYPLFDVLFIDAAKGQY---RRFFDMYSPMVRP-GGLILSD 159 (233)
T ss_dssp GG---GSHHHHTTSCCEEEEEEEGGGSCH---HHHHHHHGGGEEE-EEEEEEE
T ss_pred HH---HHHHhcccCCCccEEEECCCHHHH---HHHHHHHHHHcCC-CeEEEEE
Confidence 22 222233 4789999999996532 3444444555565 4566665
No 42
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=87.17 E-value=1.2 Score=36.03 Aligned_cols=140 Identities=9% Similarity=-0.038 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHh-hCCCCCceEEeecccc--------cccC---CccccccCCCCC
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK-IRPEVSPKILEYDMRF--------EQYG---SDFAFYDYNQPQ 161 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~-~~~~~~~~LLEyD~RF--------~~~g---~~FvfYDyn~P~ 161 (258)
..+...+.+.+..... ++.+|+=|||=+=...+.- ..+..+++.+|++... ...+ -+|+.-|....
T Consensus 44 ~~~~~~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~- 121 (205)
T 3grz_A 44 HQTTQLAMLGIERAMV-KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD- 121 (205)
T ss_dssp HHHHHHHHHHHHHHCS-SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-
T ss_pred CccHHHHHHHHHHhcc-CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-
Confidence 3566677777776654 6789999998875544321 1344589999998643 2122 13444444322
Q ss_pred CchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec-hHHHHHHHHHHhCCcccceeecCCCCCCCcee
Q 025067 162 DLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT-GEVQKERAAELLGLRPCGFRPQHSSKLGNEFR 240 (258)
Q Consensus 162 ~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T-g~~me~~i~kll~~~~~~F~P~h~n~L~Nef~ 240 (258)
..++||+|++++|+- .+.++...+..++++ ++++++++ +....+.+.+++ ....|++.... ..+++.
T Consensus 122 -----~~~~fD~i~~~~~~~---~~~~~l~~~~~~L~~-gG~l~~~~~~~~~~~~~~~~~--~~~Gf~~~~~~-~~~~w~ 189 (205)
T 3grz_A 122 -----VDGKFDLIVANILAE---ILLDLIPQLDSHLNE-DGQVIFSGIDYLQLPKIEQAL--AENSFQIDLKM-RAGRWI 189 (205)
T ss_dssp -----CCSCEEEEEEESCHH---HHHHHGGGSGGGEEE-EEEEEEEEEEGGGHHHHHHHH--HHTTEEEEEEE-EETTEE
T ss_pred -----CCCCceEEEECCcHH---HHHHHHHHHHHhcCC-CCEEEEEecCcccHHHHHHHH--HHcCCceEEee-ccCCEE
Confidence 247899999999872 344454555555565 45666642 222233344443 11223333221 234555
Q ss_pred eeeccCC
Q 025067 241 LFTNYGP 247 (258)
Q Consensus 241 cytNye~ 247 (258)
++.+..+
T Consensus 190 ~~~~~~~ 196 (205)
T 3grz_A 190 GLAISRK 196 (205)
T ss_dssp EEEEEEC
T ss_pred EEEEecc
Confidence 6655544
No 43
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=87.09 E-value=1.1 Score=37.56 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=63.8
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHh--hCCCCCceEEeecccc--------cccC--C--ccccccC
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK--IRPEVSPKILEYDMRF--------EQYG--S--DFAFYDY 157 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~--~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDy 157 (258)
.+..+...|...+... +..+|+=|||=+=+..+.- ..+..+++.+|++... ...| + +|+.-|.
T Consensus 55 ~~~~~~~~l~~~~~~~---~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 131 (232)
T 3ntv_A 55 VDRLTLDLIKQLIRMN---NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA 131 (232)
T ss_dssp CCHHHHHHHHHHHHHH---TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCG
T ss_pred cCHHHHHHHHHHHhhc---CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH
Confidence 4566666666555443 5689999999776665432 2367789999998643 2232 1 3444444
Q ss_pred CCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 158 NQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
.+ .+|..+.++||+|++|++.... ..+-..+..++++ ++.|++
T Consensus 132 ~~--~~~~~~~~~fD~V~~~~~~~~~---~~~l~~~~~~Lkp-gG~lv~ 174 (232)
T 3ntv_A 132 LE--QFENVNDKVYDMIFIDAAKAQS---KKFFEIYTPLLKH-QGLVIT 174 (232)
T ss_dssp GG--CHHHHTTSCEEEEEEETTSSSH---HHHHHHHGGGEEE-EEEEEE
T ss_pred HH--HHHhhccCCccEEEEcCcHHHH---HHHHHHHHHhcCC-CeEEEE
Confidence 32 1331456889999999986653 3344444455565 345544
No 44
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=86.99 E-value=3.4 Score=32.05 Aligned_cols=92 Identities=11% Similarity=0.119 Sum_probs=56.4
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccc-----cCC-ccccccCCCCCCchhhhccCccEEEECCCCC-
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ-----YGS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL- 181 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~-----~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl- 181 (258)
++.+|+=|||=+=... +.+. +.+++.+|++...-. +.. +|+.-|.... .++ .++||+|++.|+.+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~---~~~~D~i~~~~~~~~ 119 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVD-QIS---ETDFDLIVSAGNVMG 119 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTS-CCC---CCCEEEEEECCCCGG
T ss_pred CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccC-CCC---CCceeEEEECCcHHh
Confidence 6789999988653332 3332 458999999864321 111 4555555431 121 36799999998764
Q ss_pred --CHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 182 --SKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 182 --seec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+.+-..++-..+..++++ ++.+++.++
T Consensus 120 ~~~~~~~~~~l~~~~~~l~~-~G~l~~~~~ 148 (195)
T 3cgg_A 120 FLAEDGREPALANIHRALGA-DGRAVIGFG 148 (195)
T ss_dssp GSCHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred hcChHHHHHHHHHHHHHhCC-CCEEEEEeC
Confidence 334456666666677776 457777654
No 45
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=86.76 E-value=0.54 Score=43.60 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=35.4
Q ss_pred cCccEEEECCCCCCHHH----HHHHHHH-HHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeecCCCCC
Q 025067 169 HAFSVVVVDPPYLSKEC----LEKVSET-VSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKL 235 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec----~eK~A~T-ir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~n~L 235 (258)
.+||+||+||||+.+-- +.++-.. -+.|.+-.+.++.+.|+ ...+.+.+|++...=.+-+..+|
T Consensus 300 ~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~---~~~l~~~~g~~~~~~~~l~nG~l 368 (385)
T 3ldu_A 300 DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS---YEDFEYEFGQKADKKRKLYNGML 368 (385)
T ss_dssp CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES---CTTHHHHHTSCCSEEEEEEETTE
T ss_pred CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC---CHHHHHhhCCCcccceEEecCCE
Confidence 57999999999985421 1222222 22332322457777777 23355677887764444443334
No 46
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=86.69 E-value=8.5 Score=29.64 Aligned_cols=92 Identities=9% Similarity=0.023 Sum_probs=55.2
Q ss_pred CCCeEEEEeChhHHHHHH--hhCCCCCceEEeeccccc--------ccCC--ccccccCCCCCCchhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFE--------QYGS--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF~--------~~g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
++.+|+-|||=+=...+. +..|..+++.+|++...- .+|- +. ++.-+.+..+|. ..++||+|++..
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~-~~~~~D~i~~~~ 102 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD-VPDNPDVIFIGG 102 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG-CCSCCSEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc-cCCCCCEEEECC
Confidence 567999999987665543 334567899999986322 2221 22 333332233332 226899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 179 PYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 179 PFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
++.... +-..+..++++ ++++++.+.
T Consensus 103 ~~~~~~----~l~~~~~~L~~-gG~l~~~~~ 128 (178)
T 3hm2_A 103 GLTAPG----VFAAAWKRLPV-GGRLVANAV 128 (178)
T ss_dssp -TTCTT----HHHHHHHTCCT-TCEEEEEEC
T ss_pred cccHHH----HHHHHHHhcCC-CCEEEEEee
Confidence 988733 33444556666 457777553
No 47
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=86.16 E-value=1.2 Score=44.68 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=42.3
Q ss_pred cCccEEEECCCCCCH-----H---HHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeecCCCCCCCcee
Q 025067 169 HAFSVVVVDPPYLSK-----E---CLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQHSSKLGNEFR 240 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse-----e---c~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~h~n~L~Nef~ 240 (258)
++||+||++|||+.+ + -...+.+.+|.+.. +.++.+.|+ ..-+.+.+|++...=.+-+..+|--.+.
T Consensus 302 ~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~--g~~~~ilt~---~~~l~~~~glk~~k~~~l~nG~l~~~~~ 376 (703)
T 3v97_A 302 GPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFG--GWNLSLFSA---SPDLLSCLQLRADKQYKAKNGPLDCVQK 376 (703)
T ss_dssp CCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCT--TCEEEEEES---CHHHHHTTCCCEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCC--CCeEEEEeC---CHHHHHHhCCCcccceeeecCCEEEEEE
Confidence 379999999999864 1 12223344444433 457777777 2334577899887655555445544444
Q ss_pred eeecc
Q 025067 241 LFTNY 245 (258)
Q Consensus 241 cytNy 245 (258)
-|.=|
T Consensus 377 ~y~~~ 381 (703)
T 3v97_A 377 NYHVA 381 (703)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 44333
No 48
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=86.02 E-value=0.79 Score=42.28 Aligned_cols=105 Identities=10% Similarity=0.152 Sum_probs=60.8
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeeccccc--------ccC-----C-ccccccCCCCCCchhhhccCccEE
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFE--------QYG-----S-DFAFYDYNQPQDLPLELKHAFSVV 174 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~--------~~g-----~-~FvfYDyn~P~~lp~~lk~~fD~V 174 (258)
.+.+|+=|||=+=...+ .+..|..+++.+|++...- ..| . +|+.=|..++. + .++||+|
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~--~---~~~fD~I 296 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV--E---PFRFNAV 296 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC--C---TTCEEEE
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC--C---CCCeeEE
Confidence 35799999987665544 3446778999999985432 112 0 23444544432 2 3689999
Q ss_pred EECCCCCCH-----HHHHHHHHHHHHhcCCCCCcEEEechH--HHHHHHHHHhC
Q 025067 175 VVDPPYLSK-----ECLEKVSETVSFLARPGDSKLLLLTGE--VQKERAAELLG 221 (258)
Q Consensus 175 v~DPPFlse-----ec~eK~A~Tir~L~k~~~~kiil~Tg~--~me~~i~kll~ 221 (258)
|++|||... .-..++-..+..++++ +++++++... .....+.++++
T Consensus 297 i~nppfh~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~iv~n~~~~~~~~l~~~fg 349 (375)
T 4dcm_A 297 LCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIVANRHLDYFHKLKKIFG 349 (375)
T ss_dssp EECCCC-------CCHHHHHHHHHHHHEEE-EEEEEEEEETTSCHHHHHHHHHS
T ss_pred EECCCcccCcccCHHHHHHHHHHHHHhCCC-CcEEEEEEECCcCHHHHHHHhcC
Confidence 999999742 2222344455555565 3466554432 23456777774
No 49
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=86.00 E-value=0.51 Score=43.19 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=47.6
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccc--------cccC---C-ccccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRF--------EQYG---S-DFAFY 155 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF--------~~~g---~-~FvfY 155 (258)
-||++..-...++ ..... ++.+|+=++|=+=...+.-. .+..+++-+|++... ...| . +|+.-
T Consensus 199 g~f~~~~~~~~~~---~~~~~-~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~ 274 (396)
T 2as0_A 199 GFFLDQRENRLAL---EKWVQ-PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG 274 (396)
T ss_dssp CCCSTTHHHHHHH---GGGCC-TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred CccCCHHHHHHHH---HHHhh-CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEC
Confidence 3666544433333 33332 56789888876655444321 223479999998643 2112 1 23333
Q ss_pred cCCCCCCchhhh---ccCccEEEECCCCCC
Q 025067 156 DYNQPQDLPLEL---KHAFSVVVVDPPYLS 182 (258)
Q Consensus 156 Dyn~P~~lp~~l---k~~fD~Vv~DPPFls 182 (258)
|.. +++..+ .++||+||+|||+..
T Consensus 275 d~~---~~~~~~~~~~~~fD~Vi~dpP~~~ 301 (396)
T 2as0_A 275 SAF---EEMEKLQKKGEKFDIVVLDPPAFV 301 (396)
T ss_dssp CHH---HHHHHHHHTTCCEEEEEECCCCSC
T ss_pred CHH---HHHHHHHhhCCCCCEEEECCCCCC
Confidence 321 122222 357999999999976
No 50
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=85.62 E-value=0.76 Score=38.71 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=33.0
Q ss_pred cccccCCCCCCchhh-hccCccEEEECCCCCCH---------HHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 152 FAFYDYNQPQDLPLE-LKHAFSVVVVDPPYLSK---------ECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 152 FvfYDyn~P~~lp~~-lk~~fD~Vv~DPPFlse---------ec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
|+.=|...+...... ...+||+||++|||... +-..++...+..++++ ++.+++ ++
T Consensus 149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~-~~ 214 (250)
T 1o9g_A 149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA-HAVIAV-TD 214 (250)
T ss_dssp EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT-TCEEEE-EE
T ss_pred eeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC-CcEEEE-eC
Confidence 666666554211001 12379999999999753 3334555556666776 456666 44
No 51
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=85.61 E-value=3.2 Score=36.05 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=61.8
Q ss_pred ccccChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhh-CCCCCceEEee-cccc-------------cccC---
Q 025067 89 QFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKI-RPEVSPKILEY-DMRF-------------EQYG--- 149 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~-~~~~~~~LLEy-D~RF-------------~~~g--- 149 (258)
.+| .....|++.+.+... ..+.+|+=|||=+=+..+.-. ....+++.+|+ +... ...|
T Consensus 59 ~~~---~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~ 135 (281)
T 3bzb_A 59 HVW---SGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSET 135 (281)
T ss_dssp ------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-------
T ss_pred eee---cHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccccc
Confidence 455 345667777776542 156799999887766554321 22237999999 6322 1111
Q ss_pred ----C-ccccccCCCCC-Cchhhh-ccCccEEEE-CCCCCCHHHHHHHHHHHHHhcC
Q 025067 150 ----S-DFAFYDYNQPQ-DLPLEL-KHAFSVVVV-DPPYLSKECLEKVSETVSFLAR 198 (258)
Q Consensus 150 ----~-~FvfYDyn~P~-~lp~~l-k~~fD~Vv~-DPPFlseec~eK~A~Tir~L~k 198 (258)
. ++..+|...+. .++..+ .++||+||+ |++|...+ ..++..+++.+++
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~-~~~ll~~l~~~Lk 191 (281)
T 3bzb_A 136 VKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQA-HDALLRSVKMLLA 191 (281)
T ss_dssp ---CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGG-HHHHHHHHHHHBC
T ss_pred CCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHH-HHHHHHHHHHHhc
Confidence 1 34445554432 233322 468998876 99997654 5777788888877
No 52
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=85.59 E-value=0.46 Score=43.15 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=13.1
Q ss_pred cCccEEEECCCCCCH
Q 025067 169 HAFSVVVVDPPYLSK 183 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (258)
+++|+|++||||...
T Consensus 57 ~svDlI~tDPPY~~~ 71 (319)
T 1eg2_A 57 DSVQLIICDPPYNIM 71 (319)
T ss_dssp TCEEEEEECCCSBCC
T ss_pred CCcCEEEECCCCCCC
Confidence 579999999999764
No 53
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=85.27 E-value=0.61 Score=42.54 Aligned_cols=94 Identities=10% Similarity=-0.013 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhcCCCCCeE--EEEeChhHHHHHHhhCCCCCceEEeecccccc-cCCccc------cccCCCCCCchhhh
Q 025067 97 AETVAQEAVSLCSDSDSRV--ACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ-YGSDFA------FYDYNQPQDLPLEL 167 (258)
Q Consensus 97 a~~La~~l~~~a~~~~~~I--aclstPSly~~lk~~~~~~~~~LLEyD~RF~~-~g~~Fv------fYDyn~P~~lp~~l 167 (258)
...+.+.|... +..++ .+-|+|.|-..... ...+++++|.+.+=.. ...++- .+.-.-=..+...+
T Consensus 80 l~~yf~~l~~~---n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~ 154 (283)
T 2oo3_A 80 FLEYISVIKQI---NLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALL 154 (283)
T ss_dssp GHHHHHHHHHH---SSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHC
T ss_pred HHHHHHHHHHh---cCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhc
Confidence 34555665554 33334 67788887665543 3356777777654321 221221 11100000011111
Q ss_pred c--cCccEEEECCCCCCHHHHHHHHHHHHH
Q 025067 168 K--HAFSVVVVDPPYLSKECLEKVSETVSF 195 (258)
Q Consensus 168 k--~~fD~Vv~DPPFlseec~eK~A~Tir~ 195 (258)
+ .+||+|++||||.-.+=.+++..++..
T Consensus 155 ~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 155 PPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp SCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 1 259999999999943225555555443
No 54
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=84.94 E-value=0.69 Score=46.44 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=64.0
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCC-CCceEEeeccccccc--------C---C--cc
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPE-VSPKILEYDMRFEQY--------G---S--DF 152 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~-~~~~LLEyD~RF~~~--------g---~--~F 152 (258)
-.-++++..-.+.++..+. ++.+|+=++|=|=...+.-...+ .+++-+|++...-.. | + +|
T Consensus 520 ~tG~f~d~r~~r~~l~~~~-----~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~ 594 (703)
T 3v97_A 520 DTGLFLDHRIARRMLGQMS-----KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRL 594 (703)
T ss_dssp SCSCCGGGHHHHHHHHHHC-----TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEE
T ss_pred cCCCcccHHHHHHHHHHhc-----CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence 3346666555544444332 45799999887766665432122 358999998654221 1 1 23
Q ss_pred ccccCCCCCCchhhhccCccEEEECCCCCCH-----------HHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYLSK-----------ECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse-----------ec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
+.-|..+ +.....++||+||+|||+.+. .-..++...+..++++ ++.|++++..
T Consensus 595 i~~D~~~---~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp-gG~L~~s~~~ 659 (703)
T 3v97_A 595 IQADCLA---WLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA-GGTIMFSNNK 659 (703)
T ss_dssp EESCHHH---HHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEE-EEEEEEEECC
T ss_pred EecCHHH---HHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCC-CcEEEEEECC
Confidence 3333211 112234689999999998642 2233344444555565 4577777764
No 55
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=84.76 E-value=1.2 Score=38.82 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=58.6
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCCCCCceEEeeccccc--------ccC--C--cccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFE--------QYG--S--DFAF 154 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF~--------~~g--~--~Fvf 154 (258)
-|||.....++ ..+.+... ++.+|+=++|=+=+..+. +..+. +++-+|++..-- ..| + +|+.
T Consensus 106 ~~f~~~~~~~~--~~l~~~~~-~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~ 181 (278)
T 2frn_A 106 IMFSPANVKER--VRMAKVAK-PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN 181 (278)
T ss_dssp SCCCGGGHHHH--HHHHHHCC-TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred eeEcCCcHHHH--HHHHHhCC-CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 56777633332 11222333 567898888866444332 22232 689999985421 111 1 3555
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
=|..+... .++||+||+|||+...+.+. ...+ ++++ ++.+++++
T Consensus 182 ~D~~~~~~-----~~~fD~Vi~~~p~~~~~~l~---~~~~-~Lkp-gG~l~~~~ 225 (278)
T 2frn_A 182 MDNRDFPG-----ENIADRILMGYVVRTHEFIP---KALS-IAKD-GAIIHYHN 225 (278)
T ss_dssp SCTTTCCC-----CSCEEEEEECCCSSGGGGHH---HHHH-HEEE-EEEEEEEE
T ss_pred CCHHHhcc-----cCCccEEEECCchhHHHHHH---HHHH-HCCC-CeEEEEEE
Confidence 55443221 57899999999998765543 3344 4555 34565543
No 56
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=84.72 E-value=1.9 Score=35.24 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=61.6
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeeccc--------ccccC--C--cccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMR--------FEQYG--S--DFAF 154 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~R--------F~~~g--~--~Fvf 154 (258)
+-.+..++..|...+... +..+|+=|||=+=+..+. +..| ..+++.+|++.. ++..| + +|+.
T Consensus 46 ~~~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 122 (225)
T 3tr6_A 46 MQTAPEQAQLLALLVKLM---QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL 122 (225)
T ss_dssp GSCCHHHHHHHHHHHHHH---TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred cccCHHHHHHHHHHHHhh---CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 446677777666655444 567999999976665543 3344 678999999864 33222 1 2222
Q ss_pred ccCCCCCCchhhhc-----cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 155 YDYNQPQDLPLELK-----HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 155 YDyn~P~~lp~~lk-----~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
=|.. ++...+. ++||+|++|+|... ...+-..+..++++ ++.|++
T Consensus 123 ~d~~---~~~~~~~~~~~~~~fD~v~~~~~~~~---~~~~l~~~~~~L~p-gG~lv~ 172 (225)
T 3tr6_A 123 SPAK---DTLAELIHAGQAWQYDLIYIDADKAN---TDLYYEESLKLLRE-GGLIAV 172 (225)
T ss_dssp SCHH---HHHHHHHTTTCTTCEEEEEECSCGGG---HHHHHHHHHHHEEE-EEEEEE
T ss_pred CCHH---HHHHHhhhccCCCCccEEEECCCHHH---HHHHHHHHHHhcCC-CcEEEE
Confidence 2221 1222333 78999999998432 23344444455565 345544
No 57
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=84.38 E-value=0.96 Score=41.02 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc--------cC--C---ccccccCCCCCCchh
Q 025067 99 TVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG--S---DFAFYDYNQPQDLPL 165 (258)
Q Consensus 99 ~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~--------~g--~---~FvfYDyn~P~~lp~ 165 (258)
.|++.+.. .. ++.+|+=|+|=+=...+.-...+.+++.+|++..--. .| . +|+.=|.. ++..
T Consensus 143 ~l~~~~~~-~~-~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~---~~l~ 217 (332)
T 2igt_A 143 WLKNAVET-AD-RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM---KFIQ 217 (332)
T ss_dssp HHHHHHHH-SS-SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH---HHHH
T ss_pred HHHHHHHh-cC-CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHH---HHHH
Confidence 35555542 22 4578999988665444432112348999999864321 11 0 23322321 1122
Q ss_pred hh---ccCccEEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 166 EL---KHAFSVVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 166 ~l---k~~fD~Vv~DPPFls----------eec~eK~A~Tir~L~k~~~~kiil 206 (258)
.+ ..+||+||+|||+.+ .+...++...+..++++ ++.+++
T Consensus 218 ~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp-gG~lli 270 (332)
T 2igt_A 218 REERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP-KALGLV 270 (332)
T ss_dssp HHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT-TCCEEE
T ss_pred HHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc-CcEEEE
Confidence 22 357999999999533 22344555555566676 445444
No 58
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=84.28 E-value=1.4 Score=35.15 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCCCCeEEEEeChhHH--HHHHhhCCCCCceEEeeccccc--------ccCC-ccccccCCCCCCchhhh
Q 025067 99 TVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFE--------QYGS-DFAFYDYNQPQDLPLEL 167 (258)
Q Consensus 99 ~La~~l~~~a~~~~~~IaclstPSly--~~lk~~~~~~~~~LLEyD~RF~--------~~g~-~FvfYDyn~P~~lp~~l 167 (258)
.+.+.+..... ++.+|+=|||=+=. ..+.+..+. +++.+|++...- ..+. +|+.-|..+. .++
T Consensus 31 ~~~~~l~~~~~-~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-~~~--- 104 (215)
T 2pxx_A 31 SFRALLEPELR-PEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-DFP--- 104 (215)
T ss_dssp HHHHHHGGGCC-TTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-CSC---
T ss_pred HHHHHHHHhcC-CCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-CCC---
Confidence 36666666654 67899999886533 233333222 899999985432 1111 4555555431 111
Q ss_pred ccCccEEEECCCCCC---------------HHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 168 KHAFSVVVVDPPYLS---------------KECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 168 k~~fD~Vv~DPPFls---------------eec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.++||+||+.+||.. .+-..++-..+..++++ ++++++.+.
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~~ 160 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP-GGRFISMTS 160 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE-EEEEEEEES
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcC-CCEEEEEeC
Confidence 367999999988732 22234555555566666 456777664
No 59
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=84.14 E-value=0.54 Score=42.96 Aligned_cols=93 Identities=16% Similarity=0.057 Sum_probs=48.8
Q ss_pred CCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC-C--ccccccCCCCCCchhhh---ccCccEEEEC
Q 025067 112 DSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLEL---KHAFSVVVVD 177 (258)
Q Consensus 112 ~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g-~--~FvfYDyn~P~~lp~~l---k~~fD~Vv~D 177 (258)
+.+|+=++|=+=...+.-.....+++-+|++...- ..| . +|+.-|.. ++...+ ..+||+||+|
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~---~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAF---DLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHH---HHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHH---HHHHHHHhcCCCeeEEEEC
Confidence 46888887765444332110034788899885432 112 1 23333321 122222 3579999999
Q ss_pred CCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 178 PPYLS----------KECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 178 PPFls----------eec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
||+.. +.+ .++...+..++++ ++.+++++.
T Consensus 287 pP~~~~~~~~~~~~~~~~-~~~l~~~~~~Lkp-gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAY-KEVNLRAIKLLKE-GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHH-HHHHHHHHHTEEE-EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHH-HHHHHHHHHhcCC-CCEEEEEEC
Confidence 99965 232 3333334444455 346666543
No 60
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=84.08 E-value=0.51 Score=43.29 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=49.4
Q ss_pred CCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccccc--------cC----C-ccccccCCCCCCchhhh---ccCccE
Q 025067 111 SDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQ--------YG----S-DFAFYDYNQPQDLPLEL---KHAFSV 173 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~--------~g----~-~FvfYDyn~P~~lp~~l---k~~fD~ 173 (258)
++.+|+=++|=+=...+.-. ....+++-+|++..--. .| . +|+.=|.. ++...+ ..+||+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~---~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF---KLLRTYRDRGEKFDV 296 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHH---HHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH---HHHHHHHhcCCCCCE
Confidence 56788888765533333211 12347899999854321 11 0 23332321 122222 257999
Q ss_pred EEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 174 VVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 174 Vv~DPPFls----------eec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
||+|||+.+ ..+..-+..+++.|. + ++.|++++
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-p-gG~l~~~~ 339 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN-E-GGILLTFS 339 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEE-E-EEEEEEEE
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-C-CcEEEEEe
Confidence 999999965 444444555555554 4 33555543
No 61
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=83.97 E-value=0.4 Score=37.78 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=51.8
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeeccccc--------ccC--C--ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
++.+|+=|||=+=...+ .+ .+..+++.+|++...- ..| + +|+.=|.. ++...+.++||+|++
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~fD~i~~ 106 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVS-RGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE---RAIDCLTGRFDLVFL 106 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHH-TTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH---HHHHHBCSCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHH---HhHHhhcCCCCEEEE
Confidence 56789999987644433 33 2446899999986432 222 1 22222221 111233467999999
Q ss_pred CCCCCCHHHHHHHHHHHH--HhcCCCCCcEEEechH
Q 025067 177 DPPYLSKECLEKVSETVS--FLARPGDSKLLLLTGE 210 (258)
Q Consensus 177 DPPFlseec~eK~A~Tir--~L~k~~~~kiil~Tg~ 210 (258)
||||.. ......-..+. .++++ ++.+++.++.
T Consensus 107 ~~~~~~-~~~~~~~~~l~~~~~L~~-gG~l~~~~~~ 140 (177)
T 2esr_A 107 DPPYAK-ETIVATIEALAAKNLLSE-QVMVVCETDK 140 (177)
T ss_dssp CCSSHH-HHHHHHHHHHHHTTCEEE-EEEEEEEEET
T ss_pred CCCCCc-chHHHHHHHHHhCCCcCC-CcEEEEEECC
Confidence 999943 22333333332 33344 4567776653
No 62
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=83.90 E-value=1.4 Score=39.50 Aligned_cols=115 Identities=10% Similarity=0.205 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccc--------ccCC--ccccccCCCCCCch
Q 025067 97 AETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYGS--DFAFYDYNQPQDLP 164 (258)
Q Consensus 97 a~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~--------~~g~--~FvfYDyn~P~~lp 164 (258)
.+.|++.+... ...+|+=|||=+=... +.+..|..+++.+|++...- ..+- +++.=|...
T Consensus 185 ~~~ll~~l~~~---~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~----- 256 (343)
T 2pjd_A 185 SQLLLSTLTPH---TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS----- 256 (343)
T ss_dssp HHHHHHHSCTT---CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT-----
T ss_pred HHHHHHhcCcC---CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc-----
Confidence 44455444221 3568888877654433 44446667999999986432 1221 233333321
Q ss_pred hhhccCccEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCCcEEEechHH--HHHHHHHHhC
Q 025067 165 LELKHAFSVVVVDPPYLS-----KECLEKVSETVSFLARPGDSKLLLLTGEV--QKERAAELLG 221 (258)
Q Consensus 165 ~~lk~~fD~Vv~DPPFls-----eec~eK~A~Tir~L~k~~~~kiil~Tg~~--me~~i~kll~ 221 (258)
...++||+||++|||-. .+-..++-..+..++++ ++++++.+... ....+.+.++
T Consensus 257 -~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~l~~~f~ 318 (343)
T 2pjd_A 257 -EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS-GGELRIVANAFLPYPDVLDETFG 318 (343)
T ss_dssp -TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE-EEEEEEEEETTSSHHHHHHHHHS
T ss_pred -cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCC-CcEEEEEEcCCCCcHHHHHHhcC
Confidence 12468999999999963 33334444455555565 45666665422 3456666664
No 63
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=83.75 E-value=3.8 Score=33.43 Aligned_cols=110 Identities=20% Similarity=0.109 Sum_probs=62.6
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeeccccccc--------C--C--c
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMRFEQY--------G--S--D 151 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~RF~~~--------g--~--~ 151 (258)
...+..+..+...|...+... +..+|+=|||=+=+..+. +..+ ..+++.+|.+...-.. | . +
T Consensus 48 ~~~~~~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~ 124 (229)
T 2avd_A 48 QGDSMMTCEQAQLLANLARLI---QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124 (229)
T ss_dssp TGGGSCCHHHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEE
T ss_pred CCCCccCHHHHHHHHHHHHhc---CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEE
Confidence 345666777777665544332 568999999977665543 3234 5689999998755322 2 1 2
Q ss_pred cccccCCCCCCchhhhc-----cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 152 FAFYDYNQPQDLPLELK-----HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 152 FvfYDyn~P~~lp~~lk-----~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
|+.=|.. +....+. ++||+|++|||...- ..+-..+..++++ ++.|++
T Consensus 125 ~~~~d~~---~~~~~~~~~~~~~~~D~v~~d~~~~~~---~~~l~~~~~~L~p-gG~lv~ 177 (229)
T 2avd_A 125 LRLKPAL---ETLDELLAAGEAGTFDVAVVDADKENC---SAYYERCLQLLRP-GGILAV 177 (229)
T ss_dssp EEESCHH---HHHHHHHHTTCTTCEEEEEECSCSTTH---HHHHHHHHHHEEE-EEEEEE
T ss_pred EEEcCHH---HHHHHHHhcCCCCCccEEEECCCHHHH---HHHHHHHHHHcCC-CeEEEE
Confidence 2222211 1112232 689999999995432 3333444445555 344555
No 64
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=83.44 E-value=0.33 Score=40.00 Aligned_cols=95 Identities=15% Similarity=0.124 Sum_probs=49.7
Q ss_pred CCCeEEEEeChhHHHHHH-hhCCCCCceEEeecccccc--------cC---C--ccccccCCCCCCchhhh-ccC-ccEE
Q 025067 111 SDSRVACIACPTLYAYLK-KIRPEVSPKILEYDMRFEQ--------YG---S--DFAFYDYNQPQDLPLEL-KHA-FSVV 174 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk-~~~~~~~~~LLEyD~RF~~--------~g---~--~FvfYDyn~P~~lp~~l-k~~-fD~V 174 (258)
++.+|+=|+|=+=...+. ......+++-+|++...-. .| + +|+.-|..+ ++..+ .++ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD---FLKQPQNQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH---HTTSCCSSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHH---HHHhhccCCCCCEE
Confidence 356888888776554442 1112247888888854321 11 1 233333211 11111 367 9999
Q ss_pred EECCCCCCHHHHHHHHHHHH--HhcCCCCCcEEEechH
Q 025067 175 VVDPPYLSKECLEKVSETVS--FLARPGDSKLLLLTGE 210 (258)
Q Consensus 175 v~DPPFlseec~eK~A~Tir--~L~k~~~~kiil~Tg~ 210 (258)
++||||...+ ..++-..+. .++++ ++.+++++..
T Consensus 130 ~~~~~~~~~~-~~~~l~~~~~~~~Lkp-gG~l~i~~~~ 165 (201)
T 2ift_A 130 FLDPPFHFNL-AEQAISLLCENNWLKP-NALIYVETEK 165 (201)
T ss_dssp EECCCSSSCH-HHHHHHHHHHTTCEEE-EEEEEEEEES
T ss_pred EECCCCCCcc-HHHHHHHHHhcCccCC-CcEEEEEECC
Confidence 9999986432 333333332 23555 4567666653
No 65
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=83.05 E-value=1.9 Score=35.68 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=56.9
Q ss_pred CCCeEEEEeChhHHHH--HHhh-CCCCCceEEeeccc----ccc----cCC-ccccccCCCCCCchhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMR----FEQ----YGS-DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~-~~~~~~~LLEyD~R----F~~----~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
++.+|+=|+|=+=... |.+. .+..+++-+|++.+ ... ... +|+.-|..++..+| ...++||+|++||
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~-~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYR-MLIAMVDVIFADV 155 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGG-GGCCCEEEEEECC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhc-ccCCcEEEEEEcC
Confidence 5679999988765443 3333 35568999999832 211 122 56667776654343 2346899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 179 PYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 179 PFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
|.... ...+...+..++++ ++.+++++.
T Consensus 156 ~~~~~--~~~~~~~~~~~Lkp-gG~l~i~~~ 183 (233)
T 2ipx_A 156 AQPDQ--TRIVALNAHTFLRN-GGHFVISIK 183 (233)
T ss_dssp CCTTH--HHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred CCccH--HHHHHHHHHHHcCC-CeEEEEEEc
Confidence 93322 34444445556666 446665544
No 66
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=81.95 E-value=2.2 Score=37.95 Aligned_cols=74 Identities=24% Similarity=0.264 Sum_probs=44.2
Q ss_pred CccEEEECCCCCC----------------HHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh-CCcccceeecCC
Q 025067 170 AFSVVVVDPPYLS----------------KECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL-GLRPCGFRPQHS 232 (258)
Q Consensus 170 ~fD~Vv~DPPFls----------------eec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll-~~~~~~F~P~h~ 232 (258)
.-|+|.+||||.. ++=...++..++.|.+. +.++|++-- ..+.+.++| +.++..+...+.
T Consensus 174 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~~-~~~~~lS~~--d~~~i~~ly~~~~i~~~~~~~s 250 (278)
T 2g1p_A 174 DSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVER-HIPVLISNH--DTMLTREWYQRAKLHVVKVRRS 250 (278)
T ss_dssp TTEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHHT-TCCEEEEEE--CCHHHHHHTTTSEEEEEC----
T ss_pred CCCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCeEEEEcC--CCHHHHHHhcCCcEEEEEEEEE
Confidence 3479999999952 12356688888888644 457777653 234677888 776666555432
Q ss_pred -------CCCCCceeeeeccCCC
Q 025067 233 -------SKLGNEFRLFTNYGPG 248 (258)
Q Consensus 233 -------n~L~Nef~cytNye~~ 248 (258)
++-..|+-+ + |++.
T Consensus 251 i~~~~~~r~~~~Elli-~-y~~~ 271 (278)
T 2g1p_A 251 ISSNGGTRKKVDELLA-L-YKPG 271 (278)
T ss_dssp ---------CCCEEEE-E-ECC-
T ss_pred EecCCCCCCceEEEEE-E-eccc
Confidence 224567744 4 7664
No 67
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=81.91 E-value=0.25 Score=38.94 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhcC--CCCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccc--------cC--C--ccccccCCC
Q 025067 96 TAETVAQEAVSLCS--DSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQ--------YG--S--DFAFYDYNQ 159 (258)
Q Consensus 96 Ta~~La~~l~~~a~--~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~--------~g--~--~FvfYDyn~ 159 (258)
|...+++.+.+... .++.+|+=++|=+=...+ .+ .+..+++.+|++...-. .+ + +|+.=|..+
T Consensus 27 ~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 27 TTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 105 (187)
T ss_dssp CCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence 33444444444331 146788888886644433 22 34457899999864321 11 1 233333322
Q ss_pred CCCchhhh---ccCccEEEECCCCCCHHHHHHHHHHH--HHhcCCCCCcEEEechH
Q 025067 160 PQDLPLEL---KHAFSVVVVDPPYLSKECLEKVSETV--SFLARPGDSKLLLLTGE 210 (258)
Q Consensus 160 P~~lp~~l---k~~fD~Vv~DPPFlseec~eK~A~Ti--r~L~k~~~~kiil~Tg~ 210 (258)
+...+ .++||+|++||||... ...+....+ ..++++ ++.++++++.
T Consensus 106 ---~~~~~~~~~~~fD~i~~~~~~~~~-~~~~~~~~l~~~~~L~~-gG~l~~~~~~ 156 (187)
T 2fhp_A 106 ---ALEQFYEEKLQFDLVLLDPPYAKQ-EIVSQLEKMLERQLLTN-EAVIVCETDK 156 (187)
T ss_dssp ---HHHHHHHTTCCEEEEEECCCGGGC-CHHHHHHHHHHTTCEEE-EEEEEEEEET
T ss_pred ---HHHHHHhcCCCCCEEEECCCCCch-hHHHHHHHHHHhcccCC-CCEEEEEeCC
Confidence 11112 4679999999998632 123333333 223444 4567776653
No 68
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=81.66 E-value=1.3 Score=41.55 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=24.7
Q ss_pred CCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccccc
Q 025067 111 SDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQ 147 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~ 147 (258)
...+|+.||+=+-+....-. .+..++.+.|+|.+--.
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie 225 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVID 225 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 46899999987655443211 23368999999976543
No 69
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=81.41 E-value=0.92 Score=41.76 Aligned_cols=88 Identities=9% Similarity=0.147 Sum_probs=47.3
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccccc--------cC----C-cccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQ--------YG----S-DFAF 154 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~--------~g----~-~Fvf 154 (258)
-||.+....+.+...++ . ++.+|+=++|=+=...+.-. ..-.+++-+|++..--. .| . +|+.
T Consensus 194 ~ff~~~~~~~~~~~~~~---~-~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~ 269 (385)
T 2b78_A 194 GIFLDQRQVRNELINGS---A-AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 269 (385)
T ss_dssp SSCGGGHHHHHHHHHTT---T-BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred CcCCcHHHHHHHHHHHh---c-CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 34455444444444332 2 56799999887765554422 12237899999875321 11 1 2333
Q ss_pred ccCCCCCCchhhh--ccCccEEEECCCCCC
Q 025067 155 YDYNQPQDLPLEL--KHAFSVVVVDPPYLS 182 (258)
Q Consensus 155 YDyn~P~~lp~~l--k~~fD~Vv~DPPFls 182 (258)
=|..+ .++... ..+||+||+|||+.+
T Consensus 270 ~D~~~--~l~~~~~~~~~fD~Ii~DPP~~~ 297 (385)
T 2b78_A 270 MDVFD--YFKYARRHHLTYDIIIIDPPSFA 297 (385)
T ss_dssp SCHHH--HHHHHHHTTCCEEEEEECCCCC-
T ss_pred CCHHH--HHHHHHHhCCCccEEEECCCCCC
Confidence 33211 012111 247999999999963
No 70
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=81.15 E-value=1.7 Score=37.34 Aligned_cols=113 Identities=10% Similarity=0.142 Sum_probs=73.6
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeeccccc--------ccCC--ccccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMRFE--------QYGS--DFAFY 155 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~RF~--------~~g~--~FvfY 155 (258)
++||++.....+.+.+.... +..+|+=|||=+=...+. +..| +.+++.+|++...- ..+. .|+.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~ 79 (284)
T 3gu3_A 2 DLYYNDDYVSFLVNTVWKIT--KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG 79 (284)
T ss_dssp TTTCCHHHHHHHHHTTSCCC--SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEES
T ss_pred CcccchHHHHHHHHHHhccC--CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEc
Confidence 68999999999888876542 568999999987665543 3345 36899999986432 2221 56666
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
|..+ +| +.++||+|++.-.+....-+.++-..+..++++ ++.+++...
T Consensus 80 d~~~---~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 127 (284)
T 3gu3_A 80 DATE---IE--LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKK-GGKIICFEP 127 (284)
T ss_dssp CTTT---CC--CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEE-EEEEEEEEC
T ss_pred chhh---cC--cCCCeeEEEECChhhcCCCHHHHHHHHHHHcCC-CCEEEEEec
Confidence 6654 22 136899999987655432234555556666776 456665543
No 71
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=80.50 E-value=7.1 Score=31.72 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=60.4
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeecccccc--------cC--C--cccccc
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMRFEQ--------YG--S--DFAFYD 156 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~RF~~--------~g--~--~FvfYD 156 (258)
-++.++..|...+... +..+|+=|||=+=+..+. +..| +.+++.+|++...-. .| + +|+.=|
T Consensus 42 ~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 118 (223)
T 3duw_A 42 VSPTQGKFLQLLVQIQ---GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGL 118 (223)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred cCHHHHHHHHHHHHhh---CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 3566666665554433 568999999977666543 3344 568999999864322 22 1 233222
Q ss_pred CCCCCCchhhh----ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 157 YNQPQDLPLEL----KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 157 yn~P~~lp~~l----k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
.. ++...+ .++||+|++|++... ..++-..+..++++ ++.|++
T Consensus 119 ~~---~~~~~~~~~~~~~fD~v~~d~~~~~---~~~~l~~~~~~L~p-gG~lv~ 165 (223)
T 3duw_A 119 AL---DSLQQIENEKYEPFDFIFIDADKQN---NPAYFEWALKLSRP-GTVIIG 165 (223)
T ss_dssp HH---HHHHHHHHTTCCCCSEEEECSCGGG---HHHHHHHHHHTCCT-TCEEEE
T ss_pred HH---HHHHHHHhcCCCCcCEEEEcCCcHH---HHHHHHHHHHhcCC-CcEEEE
Confidence 21 111222 157999999998432 34444555566676 345554
No 72
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=80.23 E-value=9.2 Score=29.30 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=51.5
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC-C--ccccccCCCCCCchhhhccCccEEEECCC
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
++.+|+=|||=+=...+.-..+..+++.+|++...- ..| + +|+.=|..+| ++. ++||+|++++|
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~---~~~D~i~~~~~ 109 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV--LDK---LEFNKAFIGGT 109 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH--GGG---CCCSEEEECSC
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc--ccC---CCCcEEEECCc
Confidence 567999999877655443223667899999986432 222 1 2333333221 222 68999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 180 YLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 180 Flseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
. -...+-..++.+ + ++.+++++
T Consensus 110 -~---~~~~~l~~~~~~--~-gG~l~~~~ 131 (183)
T 2yxd_A 110 -K---NIEKIIEILDKK--K-INHIVANT 131 (183)
T ss_dssp -S---CHHHHHHHHHHT--T-CCEEEEEE
T ss_pred -c---cHHHHHHHHhhC--C-CCEEEEEe
Confidence 2 234555555555 4 45777665
No 73
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=79.93 E-value=1.1 Score=36.76 Aligned_cols=112 Identities=13% Similarity=-0.047 Sum_probs=68.9
Q ss_pred ccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeeccccc--------ccCC-c
Q 025067 83 EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFE--------QYGS-D 151 (258)
Q Consensus 83 EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~--------~~g~-~ 151 (258)
-.|...|.|-.......+++.+.- . ++.+|+=|||=+=+..+ .+.. .+++.+|++...- ..|. +
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~ 119 (231)
T 1vbf_A 45 LPILPGINTTALNLGIFMLDELDL--H-KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIK 119 (231)
T ss_dssp EEEETTEEECCHHHHHHHHHHTTC--C-TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEE
T ss_pred eeeCCCCccCCHHHHHHHHHhcCC--C-CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeE
Confidence 346667888888888777776632 2 56899999987644433 2322 5789999986432 2221 3
Q ss_pred cccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
|+.-|...+ ++ ..++||+||++.++-.- . ..+..++++ +++++++++.
T Consensus 120 ~~~~d~~~~--~~--~~~~fD~v~~~~~~~~~--~----~~~~~~L~p-gG~l~~~~~~ 167 (231)
T 1vbf_A 120 LILGDGTLG--YE--EEKPYDRVVVWATAPTL--L----CKPYEQLKE-GGIMILPIGV 167 (231)
T ss_dssp EEESCGGGC--CG--GGCCEEEEEESSBBSSC--C----HHHHHTEEE-EEEEEEEECS
T ss_pred EEECCcccc--cc--cCCCccEEEECCcHHHH--H----HHHHHHcCC-CcEEEEEEcC
Confidence 444444332 22 23689999999887542 1 234456666 4577777764
No 74
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=79.61 E-value=0.77 Score=37.76 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=47.9
Q ss_pred CCCeEEEEeChhHHHHHH-hhCCCCCceEEeeccccc--------ccC--C-ccccccCCCCCCchhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAYLK-KIRPEVSPKILEYDMRFE--------QYG--S-DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk-~~~~~~~~~LLEyD~RF~--------~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
++.+|+=|+|=+=...+. ......+++-+|++...- ..+ . +|+.=|..+ +.....++||+|++||
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~---~~~~~~~~fD~V~~~~ 130 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMS---FLAQKGTPHNIVFVDP 130 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHH---HHSSCCCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH---HHhhcCCCCCEEEECC
Confidence 346788777766554442 111223788888885432 121 1 233333211 0011235799999999
Q ss_pred CCCCHHHHHHHHHHHHH--hcCCCCCcEEEech
Q 025067 179 PYLSKECLEKVSETVSF--LARPGDSKLLLLTG 209 (258)
Q Consensus 179 PFlseec~eK~A~Tir~--L~k~~~~kiil~Tg 209 (258)
||.... ...+...+.. ++++ ++.+++++.
T Consensus 131 p~~~~~-~~~~l~~l~~~~~L~p-gG~l~i~~~ 161 (202)
T 2fpo_A 131 PFRRGL-LEETINLLEDNGWLAD-EALIYVESE 161 (202)
T ss_dssp SSSTTT-HHHHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred CCCCCc-HHHHHHHHHhcCccCC-CcEEEEEEC
Confidence 987432 2333333332 2455 446666654
No 75
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=78.65 E-value=1.4 Score=40.16 Aligned_cols=126 Identities=17% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCCCCCceEEeecccc--------cccC--C--ccccccCCCCCC
Q 025067 97 AETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQD 162 (258)
Q Consensus 97 a~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDyn~P~~ 162 (258)
...++..++..+..++.+|+=++|=|=...+. ...+..+++-+|+|.+- ...| + +|+.-|..+
T Consensus 203 ~~~la~~l~~~~~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~--- 279 (373)
T 3tm4_A 203 KASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ--- 279 (373)
T ss_dssp CHHHHHHHHHHHTCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG---
T ss_pred cHHHHHHHHHhhcCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh---
Confidence 33444444443322567888888776554433 32333489999999542 1122 1 455555432
Q ss_pred chhhhccCccEEEECCCCCCHH--------HHHHHHHHHHHhcCCCCCcEEEec--hHHHHHHHHHHhCCcccceeec
Q 025067 163 LPLELKHAFSVVVVDPPYLSKE--------CLEKVSETVSFLARPGDSKLLLLT--GEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlsee--------c~eK~A~Tir~L~k~~~~kiil~T--g~~me~~i~kll~~~~~~F~P~ 230 (258)
+|. ..++||+||+||||+.+- ....+...++.++.. ++++.| ...++..+.+ .|++...=.+-
T Consensus 280 ~~~-~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g---~~~~i~~~~~~~~~~~~~-~G~~~~~~~~~ 352 (373)
T 3tm4_A 280 LSQ-YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEK---RGVFITTEKKAIEEAIAE-NGFEIIHHRVI 352 (373)
T ss_dssp GGG-TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEEE---EEEEEESCHHHHHHHHHH-TTEEEEEEEEE
T ss_pred CCc-ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCC---eEEEEECCHHHHHHHHHH-cCCEEEEEEEE
Confidence 221 126799999999998541 124455555554432 443333 3344443322 35555443333
No 76
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=78.48 E-value=2.5 Score=37.59 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=49.1
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccc-------------cC-C--ccccccCCCCCCchhhhccCcc
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ-------------YG-S--DFAFYDYNQPQDLPLELKHAFS 172 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~-------------~g-~--~FvfYDyn~P~~lp~~lk~~fD 172 (258)
+..+|+.|||=+-... +.+..+..++...|+|...-. +. . +++.=|..+.. ....++||
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l---~~~~~~fD 159 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV---NQTSQTFD 159 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC------CCCCCEE
T ss_pred CCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHH---hhcCCCcc
Confidence 5689999998765443 333334568999999974321 11 1 33443433221 11246899
Q ss_pred EEEECCCCCC--HHHH--HHHHHHHHHhcCCCCCcEEEec
Q 025067 173 VVVVDPPYLS--KECL--EKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 173 ~Vv~DPPFls--eec~--eK~A~Tir~L~k~~~~kiil~T 208 (258)
+||+|+|--. .+-+ ..+-+.++.++++ ++.+++-+
T Consensus 160 vIi~D~~~p~~~~~~l~~~~f~~~~~~~Lkp-gG~lv~~~ 198 (294)
T 3adn_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNP-GGIFVAQN 198 (294)
T ss_dssp EEEECC----------CCHHHHHHHHHTEEE-EEEEEEEE
T ss_pred EEEECCCCccCcchhccHHHHHHHHHHhcCC-CCEEEEec
Confidence 9999987421 1101 2334445666666 34555543
No 77
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=78.33 E-value=13 Score=34.93 Aligned_cols=99 Identities=10% Similarity=0.078 Sum_probs=56.6
Q ss_pred ccccC-hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC-C-ccccccC
Q 025067 89 QFWYD-AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG-S-DFAFYDY 157 (258)
Q Consensus 89 QFWYs-d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g-~-~FvfYDy 157 (258)
-||-. ....+.|.+.+.+ .. ++.+|+=++|=+=...+.-.....+++-+|++..-- ..| . +|+.=|.
T Consensus 269 ~F~q~n~~~~e~l~~~~~~-~~-~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~ 346 (425)
T 2jjq_A 269 SFFQTNSYQAVNLVRKVSE-LV-EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASD 346 (425)
T ss_dssp SCCCSBHHHHHHHHHHHHH-HC-CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred cccccCHHHHHHHHHHhhc-cC-CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECCh
Confidence 45553 3445666666665 33 567899888876555543211235789999985431 112 1 3444443
Q ss_pred CCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhc
Q 025067 158 NQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLA 197 (258)
Q Consensus 158 n~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~ 197 (258)
.+- ++ .+||+||+|||..+. ..++...++.|.
T Consensus 347 ~~~--~~----~~fD~Vv~dPPr~g~--~~~~~~~l~~l~ 378 (425)
T 2jjq_A 347 REV--SV----KGFDTVIVDPPRAGL--HPRLVKRLNREK 378 (425)
T ss_dssp TTC--CC----TTCSEEEECCCTTCS--CHHHHHHHHHHC
T ss_pred HHc--Cc----cCCCEEEEcCCccch--HHHHHHHHHhcC
Confidence 321 11 179999999998653 344555565543
No 78
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=78.25 E-value=4.9 Score=32.97 Aligned_cols=109 Identities=17% Similarity=0.050 Sum_probs=62.1
Q ss_pred ccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhC-CCCCceEEeecccccc--------cC--C--ccccc
Q 025067 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIR-PEVSPKILEYDMRFEQ--------YG--S--DFAFY 155 (258)
Q Consensus 91 WYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~-~~~~~~LLEyD~RF~~--------~g--~--~FvfY 155 (258)
--++.+...|...+... +..+|+=|||=+=+..+. +.. ++.+++.+|++...-. .| + +|+.=
T Consensus 41 ~~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 117 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG 117 (221)
T ss_dssp GCCHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEEC
Confidence 34667777777666544 568999999976555543 222 3568999999864322 22 1 23333
Q ss_pred cCCCCCCchhhhc-----cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 156 DYNQPQDLPLELK-----HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 156 Dyn~P~~lp~~lk-----~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
|.. ++...+. ++||+|++|.+...-.-..++...+ .++++ ++.|++.
T Consensus 118 d~~---~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkp-gG~lv~~ 169 (221)
T 3u81_A 118 ASQ---DLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRK-GTVLLAD 169 (221)
T ss_dssp CHH---HHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCT-TCEEEES
T ss_pred CHH---HHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCC-CeEEEEe
Confidence 321 1112232 6899999999776543222333333 45566 4455553
No 79
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=78.03 E-value=2.9 Score=36.76 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=39.4
Q ss_pred CccEEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEechHH----HHHHHHHHh-CCcccceee
Q 025067 170 AFSVVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLLLTGEV----QKERAAELL-GLRPCGFRP 229 (258)
Q Consensus 170 ~fD~Vv~DPPFls----------eec~eK~A~Tir~L~k~~~~kiil~Tg~~----me~~i~kll-~~~~~~F~P 229 (258)
.-++|.+||||.. ++=...+|..++.|.+. +.|+|++--.. ..+.+.+++ +.++..+..
T Consensus 164 ~~~fvY~DPPY~~~~~~Y~~~f~~~d~~~L~~~l~~l~~~-g~~~~lS~~d~~~~~~~~~i~~~y~~~~i~~~~~ 237 (259)
T 1yf3_A 164 DGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDR-GIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNK 237 (259)
T ss_dssp TTEEEEECCCCTTSCCGGGGGCCHHHHHHHHHHHHHHHTT-TCEEEEEEESEETTEECHHHHHHHTTSEEEECCH
T ss_pred CCeEEEECCCCCCccchhccCCCHHHHHHHHHHHHHHhhC-CCEEEEEeecCccccccHHHHHHHhCCeEEEEEe
Confidence 3579999999974 34478899999999765 55777765311 225566666 655554443
No 80
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=77.74 E-value=9.7 Score=32.12 Aligned_cols=105 Identities=15% Similarity=0.047 Sum_probs=60.2
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeeccccc--------ccC--C--cccccc
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMRFE--------QYG--S--DFAFYD 156 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~RF~--------~~g--~--~FvfYD 156 (258)
-+..+...|...+... +..+|+=|||=+=+..+. +..| +.+++.+|++...- ..| + +|+.=|
T Consensus 47 ~~~~~~~~l~~l~~~~---~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 123 (248)
T 3tfw_A 47 VAANQGQFLALLVRLT---QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP 123 (248)
T ss_dssp CCHHHHHHHHHHHHHH---TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred cCHHHHHHHHHHHhhc---CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 3466666555544333 568999999987666543 3344 67899999986432 222 1 233223
Q ss_pred CCCCCCchhhhc--cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 157 YNQPQDLPLELK--HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 157 yn~P~~lp~~lk--~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
.. ++...+. ++||+|++|.+... ..++-..+..++++ ++.|++
T Consensus 124 ~~---~~l~~~~~~~~fD~V~~d~~~~~---~~~~l~~~~~~Lkp-GG~lv~ 168 (248)
T 3tfw_A 124 AL---QSLESLGECPAFDLIFIDADKPN---NPHYLRWALRYSRP-GTLIIG 168 (248)
T ss_dssp HH---HHHHTCCSCCCCSEEEECSCGGG---HHHHHHHHHHTCCT-TCEEEE
T ss_pred HH---HHHHhcCCCCCeEEEEECCchHH---HHHHHHHHHHhcCC-CeEEEE
Confidence 21 1122222 38999999997433 24444455566676 445554
No 81
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=77.46 E-value=2.7 Score=34.01 Aligned_cols=114 Identities=11% Similarity=-0.015 Sum_probs=69.2
Q ss_pred cccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhh-CCCCCceEEeecccc--------cccC--C
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRF--------EQYG--S 150 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~-~~~~~~~LLEyD~RF--------~~~g--~ 150 (258)
.|...|.|........+.+.+.. . ++.+|+-|||=+=+.. +.+. .+..+++.+|++... ...| .
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 129 (215)
T 2yxe_A 53 EIGYGQTISAIHMVGMMCELLDL--K-PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN 129 (215)
T ss_dssp EEETTEEECCHHHHHHHHHHTTC--C-TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT
T ss_pred cCCCCcEeCcHHHHHHHHHhhCC--C-CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Confidence 45667888888887777766522 2 5689999999764433 2232 244689999998533 2222 1
Q ss_pred -ccccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHH
Q 025067 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEV 211 (258)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~ 211 (258)
+|+.-|...+ ++ -.++||+|+++.++-.-. ..+..++++ +++++++++..
T Consensus 130 v~~~~~d~~~~--~~--~~~~fD~v~~~~~~~~~~------~~~~~~L~p-gG~lv~~~~~~ 180 (215)
T 2yxe_A 130 VIVIVGDGTLG--YE--PLAPYDRIYTTAAGPKIP------EPLIRQLKD-GGKLLMPVGRY 180 (215)
T ss_dssp EEEEESCGGGC--CG--GGCCEEEEEESSBBSSCC------HHHHHTEEE-EEEEEEEESSS
T ss_pred eEEEECCcccC--CC--CCCCeeEEEECCchHHHH------HHHHHHcCC-CcEEEEEECCC
Confidence 3333443222 22 136799999998876431 244556666 45788777643
No 82
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=76.90 E-value=2.3 Score=38.25 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=48.4
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hh-CCCCCceEEeeccc--------ccccC--C-ccccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDMR--------FEQYG--S-DFAFY 155 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~R--------F~~~g--~-~FvfY 155 (258)
+||-.+-+..|+-.++.. . ++.+|+=+||=+=...+. .. .+...++-+|+|.. .+.+| . +++.-
T Consensus 83 ~~~~Qd~~s~l~~~~l~~-~-~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~ 160 (309)
T 2b9e_A 83 HLILQDRASCLPAMLLDP-P-PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEE 160 (309)
T ss_dssp SEEECCTGGGHHHHHHCC-C-TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred eEEEECHHHHHHHHHhCC-C-CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 344444444444444443 2 567898787765444432 22 24457899998843 22233 1 45555
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
|..+....... .++||+|++|||..+.
T Consensus 161 D~~~~~~~~~~-~~~fD~Vl~D~PcSg~ 187 (309)
T 2b9e_A 161 DFLAVSPSDPR-YHEVHYILLDPSCSGS 187 (309)
T ss_dssp CGGGSCTTCGG-GTTEEEEEECCCCCC-
T ss_pred ChHhcCccccc-cCCCCEEEEcCCcCCC
Confidence 54321110001 1469999999998544
No 83
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=76.58 E-value=7.5 Score=32.62 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhC-CCCCceEEeeccccccc--------C---CccccccCC
Q 025067 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIR-PEVSPKILEYDMRFEQY--------G---SDFAFYDYN 158 (258)
Q Consensus 93 sd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~-~~~~~~LLEyD~RF~~~--------g---~~FvfYDyn 158 (258)
+..+...|...+......+..+|+=|||=+=|..+. +.. ++.+++.+|+|...... | ++..+.-.
T Consensus 38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g- 116 (221)
T 3dr5_A 38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS- 116 (221)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS-
T ss_pred CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc-
Confidence 466665555544333110123899999987766653 223 36789999999765322 1 11111111
Q ss_pred CCCCchhhh-ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 159 QPQDLPLEL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 159 ~P~~lp~~l-k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
...++...+ .++||+|++|++.... ..+-..+..++++ ++.|++
T Consensus 117 da~~~l~~~~~~~fD~V~~d~~~~~~---~~~l~~~~~~Lkp-GG~lv~ 161 (221)
T 3dr5_A 117 RPLDVMSRLANDSYQLVFGQVSPMDL---KALVDAAWPLLRR-GGALVL 161 (221)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCTTTH---HHHHHHHHHHEEE-EEEEEE
T ss_pred CHHHHHHHhcCCCcCeEEEcCcHHHH---HHHHHHHHHHcCC-CcEEEE
Confidence 111222334 5789999999987654 2233334445555 334443
No 84
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=75.95 E-value=6.9 Score=32.62 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhcCC---CCCeEEEEeChhH--HHHHHhhCCCCCceEEeecccc--------cccC--C--ccccccCC
Q 025067 96 TAETVAQEAVSLCSD---SDSRVACIACPTL--YAYLKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYN 158 (258)
Q Consensus 96 Ta~~La~~l~~~a~~---~~~~IaclstPSl--y~~lk~~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDyn 158 (258)
....++..++..... ++.+|+=|||=+= ...+....+..+++.+|++..- ...+ + +|+.=|..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK 126 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence 344455555544321 3568999998863 3334443355689999998532 2222 1 34444432
Q ss_pred CC--CCchhhhccCccEEEECCCCCCH
Q 025067 159 QP--QDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 159 ~P--~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
+. ..++..-.++||+||++|||...
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~ 153 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFAN 153 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred hhhhhhhhcccCCcccEEEECCCCccC
Confidence 21 01111001479999999999864
No 85
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=74.80 E-value=5.4 Score=34.59 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=65.9
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeeccccc--------ccCC-ccccccCCC
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRFE--------QYGS-DFAFYDYNQ 159 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~RF~--------~~g~-~FvfYDyn~ 159 (258)
|-.+-+..|++.+......++.+|+=|||=+=+... .+. .++.+++-+|++.+.- .... .++.-|...
T Consensus 57 ~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~ 136 (232)
T 3id6_C 57 FRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARF 136 (232)
T ss_dssp TTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTC
T ss_pred HHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEccccc
Confidence 333444444444322212368899999998755442 232 4566899999988541 1122 566667666
Q ss_pred CCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 160 PQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 160 P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
|.. ...+.++||+|++|-|+... ...+...++.++|+ +++++++
T Consensus 137 ~~~-~~~~~~~~D~I~~d~a~~~~--~~il~~~~~~~Lkp-GG~lvis 180 (232)
T 3id6_C 137 PQS-YKSVVENVDVLYVDIAQPDQ--TDIAIYNAKFFLKV-NGDMLLV 180 (232)
T ss_dssp GGG-TTTTCCCEEEEEECCCCTTH--HHHHHHHHHHHEEE-EEEEEEE
T ss_pred chh-hhccccceEEEEecCCChhH--HHHHHHHHHHhCCC-CeEEEEE
Confidence 532 12345689999999888433 33445556656777 4566654
No 86
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=74.75 E-value=2 Score=39.12 Aligned_cols=107 Identities=14% Similarity=0.059 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccC-C--ccccccCCCCCCchh
Q 025067 97 AETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYG-S--DFAFYDYNQPQDLPL 165 (258)
Q Consensus 97 a~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g-~--~FvfYDyn~P~~lp~ 165 (258)
.+.+.+.+++.+...+.+|+=++|=+=...+.-.....+++-.|++..- +..| + +|+.=|.. ++..
T Consensus 199 ~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~---~~~~ 275 (369)
T 3bt7_A 199 NIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE---EFTQ 275 (369)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSH---HHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHH---HHHH
Confidence 3667777777654235688888887666555321122478888888532 1122 1 23332321 1222
Q ss_pred hhc---------------cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE--echHHHH
Q 025067 166 ELK---------------HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL--LTGEVQK 213 (258)
Q Consensus 166 ~lk---------------~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil--~Tg~~me 213 (258)
.+. ++||+||+|||+.+- . ..+++.|.++ .+|+. |.+....
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~--~---~~~~~~l~~~--g~ivyvsc~p~t~a 333 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL--D---SETEKMVQAY--PRILYISCNPETLC 333 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC--C---HHHHHHHTTS--SEEEEEESCHHHHH
T ss_pred HHhhccccccccccccccCCCCEEEECcCcccc--H---HHHHHHHhCC--CEEEEEECCHHHHH
Confidence 221 379999999999742 2 2345666544 35543 4444333
No 87
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=73.98 E-value=11 Score=32.06 Aligned_cols=105 Identities=12% Similarity=0.046 Sum_probs=60.9
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeeccccccc--------C--C--cccccc
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMRFEQY--------G--S--DFAFYD 156 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~RF~~~--------g--~--~FvfYD 156 (258)
.+..+...|...+... +..+|+=|||=+=|..+. +..| +.+++.+|++...... | + +|+.=|
T Consensus 63 ~~~~~~~ll~~l~~~~---~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gd 139 (247)
T 1sui_A 63 TSADEGQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP 139 (247)
T ss_dssp CCHHHHHHHHHHHHHT---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred cCHHHHHHHHHHHHhh---CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 4566666665544333 567999999977776543 3334 5789999999765332 1 0 122112
Q ss_pred CCCCCCchhhh------ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 157 YNQPQDLPLEL------KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 157 yn~P~~lp~~l------k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
. .++...+ .++||+|++|.+-... ..+-..+..++++ ++.|++
T Consensus 140 a---~~~l~~l~~~~~~~~~fD~V~~d~~~~~~---~~~l~~~~~~Lkp-GG~lv~ 188 (247)
T 1sui_A 140 A---LPVLDEMIKDEKNHGSYDFIFVDADKDNY---LNYHKRLIDLVKV-GGVIGY 188 (247)
T ss_dssp H---HHHHHHHHHSGGGTTCBSEEEECSCSTTH---HHHHHHHHHHBCT-TCCEEE
T ss_pred H---HHHHHHHHhccCCCCCEEEEEEcCchHHH---HHHHHHHHHhCCC-CeEEEE
Confidence 1 1121223 4789999999875432 3344444556676 455655
No 88
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=73.65 E-value=8.2 Score=31.90 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=56.8
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccc--------ccCC-ccccccCCCCCC-chhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYGS-DFAFYDYNQPQD-LPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~--------~~g~-~FvfYDyn~P~~-lp~~lk~~fD~Vv~DP 178 (258)
++.+|+=|||=+=... |.+..+..+++-+|++.+.- .... .|+.-|...|.. ++ +.++||+|+.|+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~D~v~~~~ 151 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN--IVEKVDVIYEDV 151 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT--TSCCEEEEEECC
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccc--cCccEEEEEEec
Confidence 5679999998764433 33434556899999996432 1122 455567766543 22 236799999998
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 179 PYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 179 PFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
|... +...+...+..++++ ++.++++
T Consensus 152 ~~~~--~~~~~l~~~~~~Lkp-gG~l~i~ 177 (230)
T 1fbn_A 152 AQPN--QAEILIKNAKWFLKK-GGYGMIA 177 (230)
T ss_dssp CSTT--HHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CChh--HHHHHHHHHHHhCCC-CcEEEEE
Confidence 7654 345555556666666 4466653
No 89
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=73.19 E-value=3.6 Score=35.90 Aligned_cols=97 Identities=13% Similarity=0.011 Sum_probs=51.1
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccccCCccccc--cC-------CCCC------Cchhhh--ccCc
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQYGSDFAFY--DY-------NQPQ------DLPLEL--KHAF 171 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~~g~~FvfY--Dy-------n~P~------~lp~~l--k~~f 171 (258)
...+|+-|||=+=...+ .+. +..++..+|+|...-....++... .+ ..|. +..+.+ .++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 56899999998755443 333 556899999997553321111111 00 1110 111112 5789
Q ss_pred cEEEECCCCCCH--HH--HHHHHHHHHHhcCCCCCcEEEech
Q 025067 172 SVVVVDPPYLSK--EC--LEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 172 D~Vv~DPPFlse--ec--~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
|+||+|+|.... +- ...+-..++.++++ ++.+++.+|
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p-gG~lv~~~~ 194 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNN-PGIYVTQAG 194 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEEcC
Confidence 999999985311 00 12233344455565 345666544
No 90
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=73.15 E-value=4.1 Score=36.59 Aligned_cols=93 Identities=24% Similarity=0.227 Sum_probs=56.0
Q ss_pred Ccccccccc-cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccccc--------C
Q 025067 81 VSEDWRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------G 149 (258)
Q Consensus 81 ~~EDwqlSQ-FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~--------g 149 (258)
+.-+..+.| |.-+...++.|++.+.-. ++.+|+=|||=+=+-. |.+. ..+++-+|+|.+.... +
T Consensus 22 ~~~~k~~GQnfL~d~~i~~~Iv~~l~~~---~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~ 96 (295)
T 3gru_A 22 FKPKKKLGQCFLIDKNFVNKAVESANLT---KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYN 96 (295)
T ss_dssp --------CCEECCHHHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCS
T ss_pred CCCccccCccccCCHHHHHHHHHhcCCC---CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCC
Confidence 445677888 777777777777765322 5679999998765544 3332 4589999999877543 2
Q ss_pred C-ccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 150 S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 150 ~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
. +++.=|..+- .++. ..||+||+.+||--
T Consensus 97 ~v~vi~gD~l~~-~~~~---~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 97 NIEIIWGDALKV-DLNK---LDFNKVVANLPYQI 126 (295)
T ss_dssp SEEEEESCTTTS-CGGG---SCCSEEEEECCGGG
T ss_pred CeEEEECchhhC-Cccc---CCccEEEEeCcccc
Confidence 2 3444454321 1222 36999999999964
No 91
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=72.88 E-value=4.9 Score=38.10 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=61.9
Q ss_pred cccc-cccccChh------HHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------ccc
Q 025067 84 DWRL-SQFWYDAV------TAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQY 148 (258)
Q Consensus 84 Dwql-SQFWYsd~------Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~ 148 (258)
.|-. ..-||... |.+.++........ .+.+|+=|+|=+=+..+.-.....+++-+|.|..- ..+
T Consensus 60 ~w~~~~~l~~p~~~~~eQat~e~vA~~~a~~l~-~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~ 138 (410)
T 3ll7_A 60 QWAGISSLYIPSRLSLEQSSGAVTSSYKSRFIR-EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLL 138 (410)
T ss_dssp HHHTSTTCCCCCHHHHHHSCCHHHHHHGGGGSC-TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred hhhhcCCeecCCCCChhhcCHHHHHHHHHHhcC-CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHh
Confidence 5654 47777744 45555555443332 36788888877666644321224589999999643 222
Q ss_pred --C-C--ccccccCCCCCCchhhhccCccEEEECCCCCCH---------HHHHHHHHHHHHhcC
Q 025067 149 --G-S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK---------ECLEKVSETVSFLAR 198 (258)
Q Consensus 149 --g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse---------ec~eK~A~Tir~L~k 198 (258)
| + +|+.=|..+. ++..-.++||+|++||||-+. +|.-.+......|..
T Consensus 139 ~~gl~~i~~i~~Da~~~--L~~~~~~~fDvV~lDPPrr~~~~grv~~led~~P~l~~~~~~l~~ 200 (410)
T 3ll7_A 139 LNEGKDVNILTGDFKEY--LPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLP 200 (410)
T ss_dssp SCTTCEEEEEESCGGGS--HHHHHHHCCSEEEECCEEC-----CCCCGGGEESCHHHHHHHHGG
T ss_pred ccCCCcEEEEECcHHHh--hhhccCCCceEEEECCCCcCCCCceEEehhhcCCCHHHHHHHHHh
Confidence 2 1 3444343221 222113579999999999863 333345555555554
No 92
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=72.09 E-value=2.7 Score=33.88 Aligned_cols=110 Identities=14% Similarity=0.012 Sum_probs=66.8
Q ss_pred ccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCCCCCceEEeeccc--------ccccC--C-c
Q 025067 85 WRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMR--------FEQYG--S-D 151 (258)
Q Consensus 85 wqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~R--------F~~~g--~-~ 151 (258)
+...|+|....+...+.+.+.-. ++.+|+=|||=+=+..+. +. ..+++.+|++.. +...| . +
T Consensus 54 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~ 128 (210)
T 3lbf_A 54 IGQGQTISQPYMVARMTELLELT---PQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVS 128 (210)
T ss_dssp CTTSCEECCHHHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEE
T ss_pred cCCCCEeCCHHHHHHHHHhcCCC---CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceE
Confidence 45567888888887777665322 678999999977555432 32 468999999853 33222 1 3
Q ss_pred cccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
|+.-|..+. ++. .++||+|+++.++-.- . ..+..++++ ++++++..+.
T Consensus 129 ~~~~d~~~~--~~~--~~~~D~i~~~~~~~~~--~----~~~~~~L~p-gG~lv~~~~~ 176 (210)
T 3lbf_A 129 TRHGDGWQG--WQA--RAPFDAIIVTAAPPEI--P----TALMTQLDE-GGILVLPVGE 176 (210)
T ss_dssp EEESCGGGC--CGG--GCCEEEEEESSBCSSC--C----THHHHTEEE-EEEEEEEECS
T ss_pred EEECCcccC--Ccc--CCCccEEEEccchhhh--h----HHHHHhccc-CcEEEEEEcC
Confidence 444444331 111 4689999998654332 1 124456666 4577777664
No 93
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=72.03 E-value=35 Score=27.09 Aligned_cols=90 Identities=12% Similarity=0.022 Sum_probs=54.6
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccc--------ccC-C--ccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG-S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~--------~~g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
++.+|+=|||=+=+.. +.+..|..+++.+|++...- ..| + +++.-|..+ .++. + ++||+|+++
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~-~-~~~D~i~~~ 115 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPE--GLDD-L-PDPDRVFIG 115 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTT--TCTT-S-CCCSEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhh--hhhc-C-CCCCEEEEC
Confidence 5689999998665444 33446667899999985432 122 1 333334322 1211 1 569999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 178 PPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 178 PPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+++... .++-..+..++++ ++++++.+
T Consensus 116 ~~~~~~---~~~l~~~~~~Lkp-gG~l~~~~ 142 (204)
T 3e05_A 116 GSGGML---EEIIDAVDRRLKS-EGVIVLNA 142 (204)
T ss_dssp CCTTCH---HHHHHHHHHHCCT-TCEEEEEE
T ss_pred CCCcCH---HHHHHHHHHhcCC-CeEEEEEe
Confidence 998733 4555556666666 45666654
No 94
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=71.44 E-value=4.2 Score=35.23 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=52.2
Q ss_pred cccccccChh-HHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccC-C--c
Q 025067 86 RLSQFWYDAV-TAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG-S--D 151 (258)
Q Consensus 86 qlSQFWYsd~-Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g-~--~ 151 (258)
...+||++.. ..+.+. .+ .... ++.+|+=++|=+=... +.+..+..+++-+|.+..- +..| . .
T Consensus 96 ~~~~~f~~~~~~~e~~~-~~-~~~~-~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~ 172 (272)
T 3a27_A 96 DVAKIMWSQGNIEERKR-MA-FISN-ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVI 172 (272)
T ss_dssp ETTTSCCCGGGHHHHHH-HH-TSCC-TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEE
T ss_pred echhEEECCCchHHHHH-HH-HhcC-CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEE
Confidence 3456655554 333332 22 2223 5678887766443332 2222345589999998432 1112 1 2
Q ss_pred cccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcC
Q 025067 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLAR 198 (258)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k 198 (258)
|+.=|..+ ++. .++||+||+|||....+. +..+++.|..
T Consensus 173 ~~~~d~~~---~~~--~~~~D~Vi~d~p~~~~~~---l~~~~~~Lkp 211 (272)
T 3a27_A 173 PILADNRD---VEL--KDVADRVIMGYVHKTHKF---LDKTFEFLKD 211 (272)
T ss_dssp EEESCGGG---CCC--TTCEEEEEECCCSSGGGG---HHHHHHHEEE
T ss_pred EEECChHH---cCc--cCCceEEEECCcccHHHH---HHHHHHHcCC
Confidence 33333222 111 457999999999954433 3444555543
No 95
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=71.19 E-value=5.4 Score=33.89 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=61.7
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeecccccccCC------------cccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMRFEQYGS------------DFAF 154 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~RF~~~g~------------~Fvf 154 (258)
+--+..+...|...+... +..+|+=|||=+=+..+. +..+ +.+++.+|++...-.... +|+.
T Consensus 42 ~~i~~~~~~~l~~l~~~~---~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~ 118 (242)
T 3r3h_A 42 MQVAPEQAQFMQMLIRLT---RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRL 118 (242)
T ss_dssp TSCCHHHHHHHHHHHHHH---TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE
T ss_pred CccCHHHHHHHHHHHhhc---CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 446777777777665544 567999999866555543 2233 568999999986543321 1222
Q ss_pred ccCCCCCCchhhh-----ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 155 YDYNQPQDLPLEL-----KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 155 YDyn~P~~lp~~l-----k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
=|. .++...+ .++||+|++|.+... ...+-..+..++++ ++.|++
T Consensus 119 gda---~~~l~~~~~~~~~~~fD~V~~d~~~~~---~~~~l~~~~~~Lkp-GG~lv~ 168 (242)
T 3r3h_A 119 GPA---LDTLHSLLNEGGEHQFDFIFIDADKTN---YLNYYELALKLVTP-KGLIAI 168 (242)
T ss_dssp SCH---HHHHHHHHHHHCSSCEEEEEEESCGGG---HHHHHHHHHHHEEE-EEEEEE
T ss_pred cCH---HHHHHHHhhccCCCCEeEEEEcCChHH---hHHHHHHHHHhcCC-CeEEEE
Confidence 221 1222333 478999999998432 23333334445555 334443
No 96
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=70.88 E-value=14 Score=33.59 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=69.6
Q ss_pred cccccccChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHH-HHH-HhhCCCCCceEEeecc--------cccccC-C--c
Q 025067 86 RLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLY-AYL-KKIRPEVSPKILEYDM--------RFEQYG-S--D 151 (258)
Q Consensus 86 qlSQFWYsd~Ta~~La~~l~~~a~-~~~~~IaclstPSly-~~l-k~~~~~~~~~LLEyD~--------RF~~~g-~--~ 151 (258)
.++.|.|-++-...+..++. ++. .++.+|+.|||=+.. -++ ....++.+++-+|+|. +++..| . +
T Consensus 97 ~l~~fpy~~~~~~l~~~E~~-la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~ 175 (298)
T 3fpf_A 97 TLRSFYFYPRYLELLKNEAA-LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVN 175 (298)
T ss_dssp HHHTSTTHHHHHHHHHHHHH-HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEE
T ss_pred hhccCCCcccHHHHHHHHHH-HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeE
Confidence 35788887776555555543 332 368999999995432 211 1224677899999984 233233 1 2
Q ss_pred cccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHH
Q 025067 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKE 214 (258)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~ 214 (258)
|+.=|.. ++| .++||+|+++= +.. ...++-..+...+|+ +++|++-.+..|..
T Consensus 176 ~v~gDa~---~l~---d~~FDvV~~~a--~~~-d~~~~l~el~r~LkP-GG~Lvv~~~~~~r~ 228 (298)
T 3fpf_A 176 VITGDET---VID---GLEFDVLMVAA--LAE-PKRRVFRNIHRYVDT-ETRIIYRTYTGMRA 228 (298)
T ss_dssp EEESCGG---GGG---GCCCSEEEECT--TCS-CHHHHHHHHHHHCCT-TCEEEEEECCGGGG
T ss_pred EEECchh---hCC---CCCcCEEEECC--Ccc-CHHHHHHHHHHHcCC-CcEEEEEcCcchhh
Confidence 3322221 233 47899999862 222 234555666667777 56888777655543
No 97
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=70.56 E-value=27 Score=27.51 Aligned_cols=150 Identities=9% Similarity=0.034 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhhc-CCCCCeEEEEeChhHHHH--HHhhCC--CCCceEEeecccccccCC-ccccccCCCCC------
Q 025067 94 AVTAETVAQEAVSLC-SDSDSRVACIACPTLYAY--LKKIRP--EVSPKILEYDMRFEQYGS-DFAFYDYNQPQ------ 161 (258)
Q Consensus 94 d~Ta~~La~~l~~~a-~~~~~~IaclstPSly~~--lk~~~~--~~~~~LLEyD~RF~~~g~-~FvfYDyn~P~------ 161 (258)
...+-.|.+.+.+.. -.++.+|+=|||=+=... |.+..+ ..+++-+|++..- .... .|+.=|..++.
T Consensus 4 ~r~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-~~~~v~~~~~d~~~~~~~~~~~ 82 (201)
T 2plw_A 4 SRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-PIPNVYFIQGEIGKDNMNNIKN 82 (201)
T ss_dssp STTHHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-CCTTCEEEECCTTTTSSCCC--
T ss_pred hHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-CCCCceEEEccccchhhhhhcc
Confidence 344556666555432 115678998888664433 444445 4678889988732 1222 45555554432
Q ss_pred --C------------chhhhc-cCccEEEECCCCCC-----HHHHH------HHHHHHHHhcCCCCCcEEEech--HHHH
Q 025067 162 --D------------LPLELK-HAFSVVVVDPPYLS-----KECLE------KVSETVSFLARPGDSKLLLLTG--EVQK 213 (258)
Q Consensus 162 --~------------lp~~lk-~~fD~Vv~DPPFls-----eec~e------K~A~Tir~L~k~~~~kiil~Tg--~~me 213 (258)
. +...+. ++||+|++|+++-. .+... ++-..+..++++ ++.+++.+. ....
T Consensus 83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~~~~~ 161 (201)
T 2plw_A 83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI-GGTYIVKMYLGSQTN 161 (201)
T ss_dssp ---------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEEECSTTHH
T ss_pred ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC-CCEEEEEEeCCCCHH
Confidence 0 111233 58999999986532 22211 233345556666 446655332 2233
Q ss_pred HHHHHHh-CC-cccceeecCCCCCCCc-eeeeecc
Q 025067 214 ERAAELL-GL-RPCGFRPQHSSKLGNE-FRLFTNY 245 (258)
Q Consensus 214 ~~i~kll-~~-~~~~F~P~h~n~L~Ne-f~cytNy 245 (258)
+++..+- .+ ....++|.+.+.-+.| |-+.++|
T Consensus 162 ~l~~~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~~ 196 (201)
T 2plw_A 162 NLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNF 196 (201)
T ss_dssp HHHHHHHTTEEEEEECCCC-----CCEEEEEEEEE
T ss_pred HHHHHHHHHHheEEEECCcccCCcCceEEEEEecC
Confidence 3332221 12 2234567766544455 3344444
No 98
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=70.48 E-value=5.6 Score=35.77 Aligned_cols=95 Identities=18% Similarity=0.069 Sum_probs=49.7
Q ss_pred CCCeEEEEeChhHHHHHH--hhCCCCCceEEeecccccccCC---------------ccccccCCCCCCchhhhccCccE
Q 025067 111 SDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFEQYGS---------------DFAFYDYNQPQDLPLELKHAFSV 173 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF~~~g~---------------~FvfYDyn~P~~lp~~lk~~fD~ 173 (258)
...+|+-|||=+=+..+. +..+..++..+|+|...-.... +++.=|.. +......++||+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~---~~l~~~~~~fD~ 184 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF---EFLKNHKNEFDV 184 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH---HHHHHCTTCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHH---HHHHhcCCCceE
Confidence 568999999987655433 3234578999999965432211 11111111 011112468999
Q ss_pred EEECCCCC--CHHHH--HHHHHHHHHhcCCCCCcEEEech
Q 025067 174 VVVDPPYL--SKECL--EKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 174 Vv~DPPFl--seec~--eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
||+|+|-- ..+-+ ..+-+.++.++++ ++.+++.+|
T Consensus 185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkp-gG~lv~~~~ 223 (314)
T 2b2c_A 185 IITDSSDPVGPAESLFGQSYYELLRDALKE-DGILSSQGE 223 (314)
T ss_dssp EEECCC-------------HHHHHHHHEEE-EEEEEEECC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHhhcCC-CeEEEEECC
Confidence 99999532 11101 2334445556666 445666543
No 99
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=70.37 E-value=18 Score=30.09 Aligned_cols=106 Identities=15% Similarity=0.041 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc-----cCC-ccccccCCCCCCchhhhc
Q 025067 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ-----YGS-DFAFYDYNQPQDLPLELK 168 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~-----~g~-~FvfYDyn~P~~lp~~lk 168 (258)
..+..+++.+..... +..+|+=|||=+=...+.-.....+++.+|++...-. ++. .|+.-|.... |. .
T Consensus 35 ~~~~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~---~~--~ 108 (263)
T 3pfg_A 35 REAADLAALVRRHSP-KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDF---SL--G 108 (263)
T ss_dssp HHHHHHHHHHHHHCT-TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTC---CC--S
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHC---Cc--c
Confidence 345667777766654 5689999999775554432222457899999864432 112 5666665442 21 5
Q ss_pred cCccEEEECC-CCC---CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 169 HAFSVVVVDP-PYL---SKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 169 ~~fD~Vv~DP-PFl---seec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
++||+|++-. .+. +.+-+.++-..+..++++ ++.+++.
T Consensus 109 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~i~ 150 (263)
T 3pfg_A 109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLP-DGVVVVE 150 (263)
T ss_dssp CCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEE-EEEEEEC
T ss_pred CCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCC-CcEEEEE
Confidence 7899999987 442 323455566666667776 4566664
No 100
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=70.27 E-value=5.7 Score=35.60 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=49.9
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccccC-------------C--ccccccCCCCCCchhhhccCccE
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQYG-------------S--DFAFYDYNQPQDLPLELKHAFSV 173 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~~g-------------~--~FvfYDyn~P~~lp~~lk~~fD~ 173 (258)
+..+|+-|||=+=...+ .+..+..++..+|+|...-... . +++.=|..+ ......++||+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~---~l~~~~~~fDv 192 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK---FLENVTNTYDV 192 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH---HHHHCCSCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHH---HHhhcCCCceE
Confidence 56899999988755443 3323457899999996432211 0 122222111 11122468999
Q ss_pred EEECC--CCCCHH-HH-HHHHHHHHHhcCCCCCcEEEe
Q 025067 174 VVVDP--PYLSKE-CL-EKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 174 Vv~DP--PFlsee-c~-eK~A~Tir~L~k~~~~kiil~ 207 (258)
||+|| |+...+ .. ..+-..++.++++ ++.+++.
T Consensus 193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~ 229 (321)
T 2pt6_A 193 IIVDSSDPIGPAETLFNQNFYEKIYNALKP-NGYCVAQ 229 (321)
T ss_dssp EEEECCCSSSGGGGGSSHHHHHHHHHHEEE-EEEEEEE
T ss_pred EEECCcCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 99999 443211 11 3344445556665 3455553
No 101
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=70.26 E-value=3.2 Score=34.26 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccc--------ccccC--C--ccccccCCCCCCc
Q 025067 96 TAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMR--------FEQYG--S--DFAFYDYNQPQDL 163 (258)
Q Consensus 96 Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~R--------F~~~g--~--~FvfYDyn~P~~l 163 (258)
.+..|+..+.... ++.+|+=|||=+=...+.-...+.+++-+|++.. +...| . +|+.=|... +
T Consensus 65 ~~~~l~~~~~~~~--~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~ 139 (241)
T 3gdh_A 65 IAEHIAGRVSQSF--KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL---L 139 (241)
T ss_dssp HHHHHHHHHHHHS--CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH---H
T ss_pred HHHHHHHHhhhcc--CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH---h
Confidence 4666666665542 4689999999775554432112368999999854 32222 1 344444322 1
Q ss_pred hhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 164 PLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
+ ..++||+|++||||....-.......++.++++
T Consensus 140 ~--~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~p 173 (241)
T 3gdh_A 140 A--SFLKADVVFLSPPWGGPDYATAETFDIRTMMSP 173 (241)
T ss_dssp G--GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSS
T ss_pred c--ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCC
Confidence 1 246899999999999765433222223344454
No 102
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=69.21 E-value=36 Score=26.00 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=50.4
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccc--------ccC--C--ccccccCCCCCCchhhhc--cCccEE
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELK--HAFSVV 174 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk--~~fD~V 174 (258)
++.+|+=|||=+=... +.+.. .+++.+|++...- ..| . +|+.-|. ...+. ++||+|
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~------~~~~~~~~~~D~v 104 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA------PEALCKIPDIDIA 104 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH------HHHHTTSCCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCH------HHhcccCCCCCEE
Confidence 5679999988664433 33322 6889999985322 222 1 2222222 22222 579999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 175 VVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 175 v~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
++++|+... ..+-..+..++++ ++.+++.+
T Consensus 105 ~~~~~~~~~---~~~l~~~~~~l~~-gG~l~~~~ 134 (192)
T 1l3i_A 105 VVGGSGGEL---QEILRIIKDKLKP-GGRIIVTA 134 (192)
T ss_dssp EESCCTTCH---HHHHHHHHHTEEE-EEEEEEEE
T ss_pred EECCchHHH---HHHHHHHHHhcCC-CcEEEEEe
Confidence 999997543 4555556666666 45666654
No 103
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=68.39 E-value=5.2 Score=33.27 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=59.6
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeecccc--------cccC--C--c
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRF--------EQYG--S--D 151 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~RF--------~~~g--~--~ 151 (258)
..|.+|.+... .++..+. . .++.+|+=+||=+=...+ .+. .|..+++.+|++... +.+| + +
T Consensus 73 ~~~~~~~~~~~-~i~~~~~-~--~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~ 148 (255)
T 3mb5_A 73 GPQIVHPKDAA-LIVAYAG-I--SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVT 148 (255)
T ss_dssp CSCCCCHHHHH-HHHHHTT-C--CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEE
T ss_pred ccccccHhHHH-HHHHhhC-C--CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceE
Confidence 34666755543 3433322 1 156799999987654443 333 567789999998533 2222 1 3
Q ss_pred cccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 152 FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 152 FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
|+.-|..++ ++ .++||+|++|||-.. . +...+..++++ ++++++.+
T Consensus 149 ~~~~d~~~~--~~---~~~~D~v~~~~~~~~----~-~l~~~~~~L~~-gG~l~~~~ 194 (255)
T 3mb5_A 149 IKLKDIYEG--IE---EENVDHVILDLPQPE----R-VVEHAAKALKP-GGFFVAYT 194 (255)
T ss_dssp EECSCGGGC--CC---CCSEEEEEECSSCGG----G-GHHHHHHHEEE-EEEEEEEE
T ss_pred EEECchhhc--cC---CCCcCEEEECCCCHH----H-HHHHHHHHcCC-CCEEEEEE
Confidence 444444433 22 357999999999542 2 23333444555 34665543
No 104
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=68.21 E-value=9.3 Score=31.17 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=54.4
Q ss_pred CCCeEEEEeChhHHHH--HHhh-CCCCCceEEeeccc----cc----ccCC-ccccccCCCCCCchhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMR----FE----QYGS-DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~-~~~~~~~LLEyD~R----F~----~~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
++.+|+=++|=+=... |.+. .+..+++-+|++.. .. .... +|+.-|...+..+ ..+.++||+|++|+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEY-RALVPKVDVIFEDV 151 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGG-TTTCCCEEEEEECC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchh-hcccCCceEEEECC
Confidence 5679999988664332 3333 34568999999873 21 1122 5666676654221 12345799999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 179 PYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 179 PFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
|.... ...+...+..++++ ++.+++.+
T Consensus 152 ~~~~~--~~~~l~~~~~~Lkp-gG~l~~~~ 178 (227)
T 1g8a_A 152 AQPTQ--AKILIDNAEVYLKR-GGYGMIAV 178 (227)
T ss_dssp CSTTH--HHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCHhH--HHHHHHHHHHhcCC-CCEEEEEE
Confidence 94332 33424445555565 44666643
No 105
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=67.56 E-value=32 Score=27.77 Aligned_cols=95 Identities=7% Similarity=0.045 Sum_probs=57.7
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccC--C-ccccccCCCCCCchhhh-ccCccEEEE
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG--S-DFAFYDYNQPQDLPLEL-KHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g--~-~FvfYDyn~P~~lp~~l-k~~fD~Vv~ 176 (258)
++.+|+=|||=+=... +.+..|+.+++.+|++... ...| . .|+.-|... ++..+ .++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD---LTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC---GGGTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH---HHhhcCCCCCCEEEE
Confidence 4578888888765544 3344677789999988432 2222 1 455555543 44434 467999999
Q ss_pred CCCCCCHH--------HHHHHHHHHHHhcCCCCCcEEEech
Q 025067 177 DPPYLSKE--------CLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 177 DPPFlsee--------c~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.+|-.... ....+...+..++++ ++.+++.|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 157 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPE-NGEIHFKTD 157 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCT-TCEEEEEES
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCC-CcEEEEEeC
Confidence 98853100 123344555666776 557888774
No 106
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=67.54 E-value=9.5 Score=30.39 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=80.3
Q ss_pred CCcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCccccccccc-ccChhHHHHHHHHHHhhcCCCCCeEEEEeChh
Q 025067 44 MLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQF-WYDAVTAETVAQEAVSLCSDSDSRVACIACPT 122 (258)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlSQF-WYsd~Ta~~La~~l~~~a~~~~~~IaclstPS 122 (258)
.|+.+..+.+..++....+..+ .|++.-. ..++.-.+.+.+.+......++.+|+=|||=+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiG~G~ 76 (207)
T 1jsx_A 15 SLTDHQKNQLIAYVNMLHKWNK------------------AYNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGP 76 (207)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC------------------------------CHHHHHHHHHHHHGGGCCSSEEEEETCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhcc------------------cccccccCCHHHHHHHHHHhhhhhhhhcCCCeEEEECCCC
Confidence 5888899999888876554211 1111110 01111233344444322100257899888765
Q ss_pred HHHH--HHhhCCCCCceEEeeccccc--------ccC--C-ccccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHH
Q 025067 123 LYAY--LKKIRPEVSPKILEYDMRFE--------QYG--S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKV 189 (258)
Q Consensus 123 ly~~--lk~~~~~~~~~LLEyD~RF~--------~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~ 189 (258)
=+.. +....|..+++.+|++...- ..+ . +|+.-|..... + .++||+|++.. +.. +.++
T Consensus 77 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~---~~~~D~i~~~~-~~~---~~~~ 147 (207)
T 1jsx_A 77 GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--S---EPPFDGVISRA-FAS---LNDM 147 (207)
T ss_dssp TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--C---CSCEEEEECSC-SSS---HHHH
T ss_pred CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC--c---cCCcCEEEEec-cCC---HHHH
Confidence 4332 33335677899999986442 222 1 34444443321 1 26799999874 211 3444
Q ss_pred HHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 190 SETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 190 A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
...+..++++ ++.+++..|....+.+.+++
T Consensus 148 l~~~~~~L~~-gG~l~~~~~~~~~~~~~~~~ 177 (207)
T 1jsx_A 148 VSWCHHLPGE-QGRFYALKGQMPEDEIALLP 177 (207)
T ss_dssp HHHHTTSEEE-EEEEEEEESSCCHHHHHTSC
T ss_pred HHHHHHhcCC-CcEEEEEeCCCchHHHHHHh
Confidence 4445555555 56788888877777777666
No 107
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=67.26 E-value=3.9 Score=36.17 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=49.4
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccccC-------------C--ccccccCCCCCCchhh-hccCcc
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYG-------------S--DFAFYDYNQPQDLPLE-LKHAFS 172 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~g-------------~--~FvfYDyn~P~~lp~~-lk~~fD 172 (258)
+..+|+-|||=+=... +.+..+..++..+|+|...-... . +++.=|.. +++.. -.++||
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~---~~~~~~~~~~fD 171 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGL---AFVRQTPDNTYD 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH---HHHHSSCTTCEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHH---HHHHhccCCcee
Confidence 5689999998765443 33333456899999995432111 1 22222221 11211 246799
Q ss_pred EEEECCCCCCHHH--H--HHHHHHHHHhcCCCCCcEEEech
Q 025067 173 VVVVDPPYLSKEC--L--EKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 173 ~Vv~DPPFlseec--~--eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+||+|+|.-.... + ..+-..++.++++ ++.+++.++
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~ 211 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKP-DGICCNQGE 211 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEE-EEEEEEEEC
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCC-CcEEEEecC
Confidence 9999997643110 0 2333445555666 345665443
No 108
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=66.97 E-value=2.8 Score=33.49 Aligned_cols=108 Identities=12% Similarity=0.210 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccccc----C-CccccccCCCCCCchhhhccC
Q 025067 96 TAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY----G-SDFAFYDYNQPQDLPLELKHA 170 (258)
Q Consensus 96 Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~----g-~~FvfYDyn~P~~lp~~lk~~ 170 (258)
....+.+.+... .+.+|+=|||=+=.....-...+.+++.+|++...-.. + ..|+..|+......|....++
T Consensus 40 ~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (227)
T 3e8s_A 40 TDQAILLAILGR---QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKD 116 (227)
T ss_dssp HHHHHHHHHHHT---CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCC
T ss_pred ccHHHHHHhhcC---CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCC
Confidence 334455555544 45899999987755543322225589999998654322 1 145554432211111122356
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 171 FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 171 fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
||+|++...+...+ ..++-..++.++++ ++.+++.+
T Consensus 117 fD~v~~~~~l~~~~-~~~~l~~~~~~L~p-gG~l~~~~ 152 (227)
T 3e8s_A 117 YDLICANFALLHQD-IIELLSAMRTLLVP-GGALVIQT 152 (227)
T ss_dssp EEEEEEESCCCSSC-CHHHHHHHHHTEEE-EEEEEEEE
T ss_pred ccEEEECchhhhhh-HHHHHHHHHHHhCC-CeEEEEEe
Confidence 99999988877333 45566666677776 45666654
No 109
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=66.82 E-value=11 Score=27.83 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=40.3
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--....+.++ +...++.... ..+||+.|+....+.+.+.+..-..+|.++
T Consensus 66 ~~~dlvi~D~~l~~~~g~~-~~~~l~~~~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~l~K 124 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELA-AIEKLSRLHP--GLTCLLVTTDASSQTLLDAMRAGVRDVLRW 124 (146)
T ss_dssp TTCSEEEEECTTCCHHHHH-HHHHHHHHCT--TCEEEEEESCCCHHHHHHHHTTTEEEEEES
T ss_pred CCCCEEEEeCCCCCccHHH-HHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHhCCceeEcC
Confidence 6799999998776665543 3344444332 458999999877777777775555666554
No 110
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=66.30 E-value=7.3 Score=29.19 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=36.9
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+|--....+.++ +...+|......+.+||++|+......+.+.+..-..+|.++
T Consensus 58 ~~~dliilD~~l~~~~g~~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~K 118 (152)
T 3heb_A 58 GRAQLVLLDLNLPDMTGID-ILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITK 118 (152)
T ss_dssp TCBEEEEECSBCSSSBHHH-HHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEeCCCCCCcHHH-HHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeC
Confidence 5689999996554444333 334444422222457999999877777777764444555544
No 111
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=66.18 E-value=7 Score=33.30 Aligned_cols=121 Identities=15% Similarity=0.082 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccccc--------CCccccccCCCCCCch
Q 025067 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------GSDFAFYDYNQPQDLP 164 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~--------g~~FvfYDyn~P~~lp 164 (258)
.|...+.+.+..... ++.+|+=|||=+=... +.+.. .+++.+|+|...-.. +-...++.. ++.
T Consensus 105 ~tt~~~~~~l~~~~~-~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~----d~~ 177 (254)
T 2nxc_A 105 ETTRLALKALARHLR-PGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEG----SLE 177 (254)
T ss_dssp HHHHHHHHHHHHHCC-TTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEES----CHH
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCcEEEEEC----Chh
Confidence 455555666655544 6789999998764333 33322 389999999754322 111111111 122
Q ss_pred hhh-ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec-hHHHHHHHHHHh---CCcccc
Q 025067 165 LEL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT-GEVQKERAAELL---GLRPCG 226 (258)
Q Consensus 165 ~~l-k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T-g~~me~~i~kll---~~~~~~ 226 (258)
..+ .++||+||+++++ +.+..+...+..++++ +++++++. .....+.+.+.| |++...
T Consensus 178 ~~~~~~~fD~Vv~n~~~---~~~~~~l~~~~~~Lkp-gG~lils~~~~~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 178 AALPFGPFDLLVANLYA---ELHAALAPRYREALVP-GGRALLTGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHGGGCCEEEEEEECCH---HHHHHHHHHHHHHEEE-EEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred hcCcCCCCCEEEECCcH---HHHHHHHHHHHHHcCC-CCEEEEEeeccCCHHHHHHHHHHCCCEEEE
Confidence 223 4689999999864 3456677777777777 45666643 223334444444 555443
No 112
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=64.89 E-value=7.1 Score=32.41 Aligned_cols=113 Identities=11% Similarity=0.072 Sum_probs=64.2
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCC-CCCceEEeecccccc--------cC--C--c
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRP-EVSPKILEYDMRFEQ--------YG--S--D 151 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~-~~~~~LLEyD~RF~~--------~g--~--~ 151 (258)
..|.--+..++..|...+... +..+|+=|||=+=+..+ .+..+ ..+++.+|++..... .| . .
T Consensus 39 ~~~~~~~~~~~~~l~~l~~~~---~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 115 (239)
T 2hnk_A 39 QANMQISPEEGQFLNILTKIS---GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIF 115 (239)
T ss_dssp --CCSCCHHHHHHHHHHHHHH---TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEE
T ss_pred CcccccCHHHHHHHHHHHHhh---CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEE
Confidence 345567778888777766443 56899999997755543 23344 568999999865432 22 1 1
Q ss_pred cccccCCCCCCchhhh--------------c-cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 152 FAFYDYNQPQDLPLEL--------------K-HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 152 FvfYDyn~P~~lp~~l--------------k-~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
|+.-|... .++... . ++||+|++|... .. ...+-..+..++++ ++.|++.+
T Consensus 116 ~~~~d~~~--~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~--~~-~~~~l~~~~~~L~p-gG~lv~~~ 181 (239)
T 2hnk_A 116 LKLGSALE--TLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK--EN-YPNYYPLILKLLKP-GGLLIADN 181 (239)
T ss_dssp EEESCHHH--HHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG--GG-HHHHHHHHHHHEEE-EEEEEEEC
T ss_pred EEECCHHH--HHHHHHhhcccccccccccCCCCCcCEEEEeCCH--HH-HHHHHHHHHHHcCC-CeEEEEEc
Confidence 22222211 112111 1 679999999653 22 33444455555665 45676655
No 113
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=64.64 E-value=19 Score=28.74 Aligned_cols=92 Identities=12% Similarity=0.134 Sum_probs=55.6
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccccc-----CCccccccCCCCCCchhhhccCccEEEECCCCC--CH
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY-----GSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYL--SK 183 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~-----g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl--se 183 (258)
++.+|+=|||=+=.....-...+.+++.+|++...-.. +-.|+.-|+.. ++ ..++||+|++...+. ..
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~---~~--~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQ---LD--AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGG---CC--CCSCEEEEEECSCGGGSCH
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeecc---CC--CCCcEEEEEecCchhhcCH
Confidence 56799999887655443211124589999998644321 22455555432 22 357899999987653 33
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 184 ECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 184 ec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+-+..+-..++.++++ ++++++++
T Consensus 118 ~~~~~~l~~~~~~Lkp-gG~l~~~~ 141 (211)
T 3e23_A 118 DELADVLKLIWRALKP-GGLFYASY 141 (211)
T ss_dssp HHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred HHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 3455666666667776 45666653
No 114
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=64.63 E-value=8.4 Score=33.96 Aligned_cols=89 Identities=18% Similarity=0.102 Sum_probs=48.8
Q ss_pred ccccccc-ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc--------cC--C-ccc
Q 025067 86 RLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG--S-DFA 153 (258)
Q Consensus 86 qlSQFWY-sd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~--------~g--~-~Fv 153 (258)
.+.|.|. ++..++.+++.+.- . ++.+|+=|||=+=...+.-.....+++-+|+|.+.-. .| . +|+
T Consensus 19 ~~Gq~fl~~~~i~~~i~~~~~~--~-~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~ 95 (299)
T 2h1r_A 19 FQGQHLLKNPGILDKIIYAAKI--K-SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVY 95 (299)
T ss_dssp ----CEECCHHHHHHHHHHHCC--C-TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC-
T ss_pred ccccceecCHHHHHHHHHhcCC--C-CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence 4567665 66667777766522 1 5678988887764443322112458999999976421 11 1 344
Q ss_pred cccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 154 FYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
.=|..+ ++ .++||+||+||||-..
T Consensus 96 ~~D~~~---~~---~~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 96 EGDAIK---TV---FPKFDVCTANIPYKIS 119 (299)
T ss_dssp ---CCS---SC---CCCCSEEEEECCGGGH
T ss_pred ECchhh---CC---cccCCEEEEcCCcccc
Confidence 444322 11 1379999999999743
No 115
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=63.60 E-value=14 Score=30.97 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=60.2
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeeccccccc--------C--C--cccccc
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMRFEQY--------G--S--DFAFYD 156 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~RF~~~--------g--~--~FvfYD 156 (258)
-+..+...|...+... +..+|+=|||=+=|..+. +..| +.+++.+|+|...... | + +|+.=|
T Consensus 54 ~~~~~~~~l~~l~~~~---~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 130 (237)
T 3c3y_A 54 TSPLAGQLMSFVLKLV---NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESD 130 (237)
T ss_dssp CCHHHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred cCHHHHHHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 4566666665554433 567999999977665543 3334 6789999999765322 2 0 122222
Q ss_pred CCCCCCchhhh------ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 157 YNQPQDLPLEL------KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 157 yn~P~~lp~~l------k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
. .++...+ .++||+|++|.+-.. ...+-+.+..++++ ++.|++.
T Consensus 131 a---~~~l~~l~~~~~~~~~fD~I~~d~~~~~---~~~~l~~~~~~L~p-GG~lv~d 180 (237)
T 3c3y_A 131 A---MLALDNLLQGQESEGSYDFGFVDADKPN---YIKYHERLMKLVKV-GGIVAYD 180 (237)
T ss_dssp H---HHHHHHHHHSTTCTTCEEEEEECSCGGG---HHHHHHHHHHHEEE-EEEEEEE
T ss_pred H---HHHHHHHHhccCCCCCcCEEEECCchHH---HHHHHHHHHHhcCC-CeEEEEe
Confidence 1 1222233 468999999986432 23444444555666 3455553
No 116
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=62.77 E-value=8.6 Score=28.39 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=36.2
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+.+|+||+|.-....+.++ +...+|......+.+||+.|+....+.+.+.+..-..+|.++
T Consensus 49 ~~~~dlii~D~~l~~~~g~~-~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~K 110 (144)
T 3kht_A 49 QAKYDLIILDIGLPIANGFE-VMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDK 110 (144)
T ss_dssp TCCCSEEEECTTCGGGCHHH-HHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHH-HHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 35689999997655544332 223333211112457999999877777777764334445443
No 117
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=62.73 E-value=8.5 Score=32.60 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=61.1
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC-C-ccccccCCCCCCchhhh
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG-S-DFAFYDYNQPQDLPLEL 167 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g-~-~FvfYDyn~P~~lp~~l 167 (258)
..+.+.+... ++.+|+=|||=+=...+.-...+.+++.+|++...- ..| . +|+.-|..... .
T Consensus 110 ~~~~~~~~~~---~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~-- 181 (286)
T 3m70_A 110 GDVVDAAKII---SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN---I-- 181 (286)
T ss_dssp HHHHHHHHHS---CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC---C--
T ss_pred HHHHHHhhcc---CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc---c--
Confidence 4445544443 568999998876544432111245899999986432 222 1 56666654421 1
Q ss_pred ccCccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 168 KHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 168 k~~fD~Vv~DPPFl--seec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.++||+||+.++|- +.+-+.++-..++.++++ ++.+++.
T Consensus 182 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 222 (286)
T 3m70_A 182 QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNV-GGYNLIV 222 (286)
T ss_dssp CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEE-EEEEEEE
T ss_pred cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCC-CcEEEEE
Confidence 57899999998875 444455666667777777 4455443
No 118
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=62.67 E-value=61 Score=26.29 Aligned_cols=112 Identities=11% Similarity=-0.051 Sum_probs=60.2
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccc--------ccC-C---ccccccCCCCCCchhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFE--------QYG-S---DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~--------~~g-~---~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
++.+|+=|||=+=+..+.-..-..+++-+|++...- .+| . +|+.=|..+ .++ .+ ..||+|++++
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~--~~~-~~-~~~D~v~~~~ 130 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA--ALA-DL-PLPEAVFIGG 130 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG--GGT-TS-CCCSEEEECS
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh--hcc-cC-CCCCEEEECC
Confidence 568999999876554432111156899999986432 222 1 333334332 111 11 4699999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCcEEEech--HHHHHHHHHH--hCCcccceeecCC
Q 025067 179 PYLSKECLEKVSETVSFLARPGDSKLLLLTG--EVQKERAAEL--LGLRPCGFRPQHS 232 (258)
Q Consensus 179 PFlseec~eK~A~Tir~L~k~~~~kiil~Tg--~~me~~i~kl--l~~~~~~F~P~h~ 232 (258)
.+ .. . +...+..++++ ++++++.+. ...+..+..+ .|..+...++.+.
T Consensus 131 ~~-~~---~-~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i~~~~~ 182 (204)
T 3njr_A 131 GG-SQ---A-LYDRLWEWLAP-GTRIVANAVTLESETLLTQLHARHGGQLLRIDIAQA 182 (204)
T ss_dssp CC-CH---H-HHHHHHHHSCT-TCEEEEEECSHHHHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred cc-cH---H-HHHHHHHhcCC-CcEEEEEecCcccHHHHHHHHHhCCCcEEEEEeecc
Confidence 55 22 3 44455555666 457766543 3333332222 2666655555443
No 119
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=62.20 E-value=4 Score=33.71 Aligned_cols=121 Identities=8% Similarity=-0.016 Sum_probs=69.4
Q ss_pred ccccccccccChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHH--HHHhhCCCCCceEEeecccccc-----cCC-ccc
Q 025067 83 EDWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ-----YGS-DFA 153 (258)
Q Consensus 83 EDwqlSQFWYsd~Ta~~La~~l~~~a~-~~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF~~-----~g~-~Fv 153 (258)
++|.-..|.-........+..+++... .++.+|+=|||=+=.. .+.+..|..+++.+|++...-. .+. +|+
T Consensus 4 ~~W~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 83 (259)
T 2p35_A 4 MAWSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFG 83 (259)
T ss_dssp ----CGGGBCCCCGGGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEE
Confidence 457766666544444455555665543 2567999999865433 3444446778999999864422 122 566
Q ss_pred cccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 154 FYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 154 fYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.-|... +| ..++||+|++-..+-.-.-..++-..+..++++ ++.+++.++
T Consensus 84 ~~d~~~---~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~~~~~ 133 (259)
T 2p35_A 84 KADLAT---WK--PAQKADLLYANAVFQWVPDHLAVLSQLMDQLES-GGVLAVQMP 133 (259)
T ss_dssp ECCTTT---CC--CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEE-EEEEEEEEE
T ss_pred ECChhh---cC--ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCC-CeEEEEEeC
Confidence 666543 23 246899999977655432244555555556666 456777653
No 120
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=61.79 E-value=16 Score=29.60 Aligned_cols=92 Identities=11% Similarity=0.136 Sum_probs=57.6
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccc--------ccccCC-ccccccCCCCCCchhhhccCccEEEECCC
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMR--------FEQYGS-DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~R--------F~~~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
++.+|+=|||=+=... +.+..|+.+++.+|++.. +...+. .|+.-|.... |. .++||+|++...
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~---~~--~~~fD~v~~~~~ 118 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY---DF--EEKYDMVVSALS 118 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC---CC--CSCEEEEEEESC
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc---CC--CCCceEEEEeCc
Confidence 5689999998765443 444466779999999863 332322 4666665442 21 178999999887
Q ss_pred CCC--HHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 180 YLS--KECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 180 Fls--eec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+-. ..-...+-..++.++++ ++++++++
T Consensus 119 l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 148 (234)
T 3dtn_A 119 IHHLEDEDKKELYKRSYSILKE-SGIFINAD 148 (234)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 653 32222355556666676 45777765
No 121
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=61.67 E-value=6.4 Score=32.86 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeeccccccc--------C--C--ccccccC
Q 025067 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMRFEQY--------G--S--DFAFYDY 157 (258)
Q Consensus 93 sd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~RF~~~--------g--~--~FvfYDy 157 (258)
+..+...|...+... +..+|+=|||=+=|..+. +..+ +.+++.+|++..+... | . +|+.=|.
T Consensus 57 ~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~ 133 (232)
T 3cbg_A 57 SPEQAQFLGLLISLT---GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133 (232)
T ss_dssp CHHHHHHHHHHHHHH---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred CHHHHHHHHHHHHhc---CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 666666666544333 457999999987766543 3233 5689999999765322 2 1 1221111
Q ss_pred CCCCCchhhhc-----cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 158 NQPQDLPLELK-----HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 158 n~P~~lp~~lk-----~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
.+....+. ++||+|++|.+.. . ...+-..+..++++ ++.|++
T Consensus 134 ---~~~l~~l~~~~~~~~fD~V~~d~~~~--~-~~~~l~~~~~~Lkp-gG~lv~ 180 (232)
T 3cbg_A 134 ---LATLEQLTQGKPLPEFDLIFIDADKR--N-YPRYYEIGLNLLRR-GGLMVI 180 (232)
T ss_dssp ---HHHHHHHHTSSSCCCEEEEEECSCGG--G-HHHHHHHHHHTEEE-EEEEEE
T ss_pred ---HHHHHHHHhcCCCCCcCEEEECCCHH--H-HHHHHHHHHHHcCC-CeEEEE
Confidence 11112221 6899999998732 2 23334444455555 345555
No 122
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=61.47 E-value=12 Score=31.09 Aligned_cols=93 Identities=12% Similarity=0.183 Sum_probs=52.4
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccc---cc-----ccC--C-ccccccCCCCCCch--hhhccCccEEE
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMR---FE-----QYG--S-DFAFYDYNQPQDLP--LELKHAFSVVV 175 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~R---F~-----~~g--~-~FvfYDyn~P~~lp--~~lk~~fD~Vv 175 (258)
++.+|+=|||=+=+.. |....+..+++.+|++.. +. ..| . +|+.=|.. +++ ....++||+|+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAE---TFGQRKDVRESYDIVT 146 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHH---HHTTCTTTTTCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHH---HhcccccccCCccEEE
Confidence 4578998988654332 222256678999999972 22 222 1 23333321 122 11246899999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHH
Q 025067 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEV 211 (258)
Q Consensus 176 ~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~ 211 (258)
++. +.. ...+...+..++++ ++.+++..|..
T Consensus 147 ~~~-~~~---~~~~l~~~~~~Lkp-gG~l~~~~g~~ 177 (240)
T 1xdz_A 147 ARA-VAR---LSVLSELCLPLVKK-NGLFVALKAAS 177 (240)
T ss_dssp EEC-CSC---HHHHHHHHGGGEEE-EEEEEEEECC-
T ss_pred Eec-cCC---HHHHHHHHHHhcCC-CCEEEEEeCCC
Confidence 987 222 35555555556666 45777776644
No 123
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=61.20 E-value=13 Score=32.32 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=50.3
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccccCC---------------ccccccCCCCCCchhhhccCccE
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYGS---------------DFAFYDYNQPQDLPLELKHAFSV 173 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~g~---------------~FvfYDyn~P~~lp~~lk~~fD~ 173 (258)
+..+|+.|||=+=... +.+..+..++...|+|...-.... +++.=|.. +......++||+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~---~~l~~~~~~fD~ 154 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDAS---KFLENVTNTYDV 154 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHH---HHHHHCCSCEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChH---HHHHhCCCCceE
Confidence 5689999998764433 333334578999999965422110 11111111 111122578999
Q ss_pred EEECCCCCC--HHHH--HHHHHHHHHhcCCCCCcEEEec
Q 025067 174 VVVDPPYLS--KECL--EKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 174 Vv~DPPFls--eec~--eK~A~Tir~L~k~~~~kiil~T 208 (258)
||+|+|... .+-+ ..+-..++.++++ ++.+++.+
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p-gG~lv~~~ 192 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKP-NGYCVAQC 192 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEE-EEEEEEEC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEEC
Confidence 999986432 1111 2334445555665 34565554
No 124
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=59.44 E-value=5.7 Score=35.03 Aligned_cols=95 Identities=13% Similarity=0.044 Sum_probs=48.5
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccccC-------------C--ccccccCCCCCCchhhhccCccE
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQYG-------------S--DFAFYDYNQPQDLPLELKHAFSV 173 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~~g-------------~--~FvfYDyn~P~~lp~~lk~~fD~ 173 (258)
...+|+-|||=+=...+ .+..+..++..+|+|...-... . +++.=|.... + ....++||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~--l-~~~~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY--V-RKFKNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH--G-GGCSSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH--H-hhCCCCceE
Confidence 45899999987655443 3323456899999996432211 1 2222221110 1 112467999
Q ss_pred EEECCCCCCHHH-----HHHHHHHHHHhcCCCCCcEEEech
Q 025067 174 VVVDPPYLSKEC-----LEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 174 Vv~DPPFlseec-----~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
||+|||.-.... ...+-..++.++++ ++.+++.++
T Consensus 167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~ 206 (296)
T 1inl_A 167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKE-DGVFSAETE 206 (296)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEE-EEEEEEECC
T ss_pred EEEcCCCcccCchhhhhHHHHHHHHHHhcCC-CcEEEEEcc
Confidence 999997430100 02333444555665 346666543
No 125
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=59.43 E-value=4.7 Score=35.94 Aligned_cols=92 Identities=12% Similarity=0.028 Sum_probs=49.5
Q ss_pred ccccccccChhHHHHHHHHHHhhc-C-CCCCeEEEEeChhHHH--HHHhhCC-----CCCceEEeecccccc--------
Q 025067 85 WRLSQFWYDAVTAETVAQEAVSLC-S-DSDSRVACIACPTLYA--YLKKIRP-----EVSPKILEYDMRFEQ-------- 147 (258)
Q Consensus 85 wqlSQFWYsd~Ta~~La~~l~~~a-~-~~~~~IaclstPSly~--~lk~~~~-----~~~~~LLEyD~RF~~-------- 147 (258)
.+..|| |+..++..++..++... . .++.+|+=+||=|=.. .+.+..+ ..+++-.|+|..-..
T Consensus 103 ~~~g~~-~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~ 181 (344)
T 2f8l_A 103 IQVNHQ-MTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL 181 (344)
T ss_dssp CCGGGC-CCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred cccCcC-CChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh
Confidence 344555 67777766644444321 1 1345777666655332 2222212 157888998854321
Q ss_pred cC--CccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 148 YG--SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 148 ~g--~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
.| .+++.-|.-.+. ..++||+||++|||+.
T Consensus 182 ~g~~~~i~~~D~l~~~-----~~~~fD~Ii~NPPfg~ 213 (344)
T 2f8l_A 182 QRQKMTLLHQDGLANL-----LVDPVDVVISDLPVGY 213 (344)
T ss_dssp HTCCCEEEESCTTSCC-----CCCCEEEEEEECCCSE
T ss_pred CCCCceEEECCCCCcc-----ccCCccEEEECCCCCC
Confidence 12 144444543332 1367999999999864
No 126
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=59.12 E-value=26 Score=28.27 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccCC--ccccccCCCCCCchhhhc
Q 025067 99 TVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYGS--DFAFYDYNQPQDLPLELK 168 (258)
Q Consensus 99 ~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g~--~FvfYDyn~P~~lp~~lk 168 (258)
.+++.+.+... ++.+|+=|||=+=...+.-... .+++.+|++... ...+. +|+.-|..+ ++ +.
T Consensus 22 ~~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~--~~ 94 (243)
T 3d2l_A 22 EWVAWVLEQVE-PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE---LE--LP 94 (243)
T ss_dssp HHHHHHHHHSC-TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG---CC--CS
T ss_pred HHHHHHHHHcC-CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh---cC--CC
Confidence 34445555544 5689999998764433321111 578899987532 21221 444444432 11 23
Q ss_pred cCccEEEECC-C--CC-CHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 169 HAFSVVVVDP-P--YL-SKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 169 ~~fD~Vv~DP-P--Fl-seec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
++||+|++.+ . ++ +.+-...+-..+..++++ ++.+++.+.
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~ 138 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTD-GGKLLFDVH 138 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCC-CeEEEEEcC
Confidence 6799999976 2 23 334345555556666676 456776554
No 127
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=59.05 E-value=4.3 Score=33.13 Aligned_cols=112 Identities=6% Similarity=-0.024 Sum_probs=65.3
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeeccccccc---------------
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRFEQY--------------- 148 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~RF~~~--------------- 148 (258)
..+++.+..+...+++.+..... ++.+|+=|||=+=+..+ .+. .+..+++.+|++...-..
T Consensus 54 ~~~~~~~p~~~~~~l~~l~~~~~-~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~ 132 (226)
T 1i1n_A 54 FQATISAPHMHAYALELLFDQLH-EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSS 132 (226)
T ss_dssp TTEEECCHHHHHHHHHHTTTTSC-TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHT
T ss_pred CCceecCHHHHHHHHHHHHhhCC-CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCC
Confidence 34555566666666666643333 67899999997655443 232 344689999998543211
Q ss_pred CC-ccccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 149 GS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 149 g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
+. .|+.-|.... .+ -.++||+|+++.|+-.- + ..+..++++ ++.++++++.
T Consensus 133 ~~v~~~~~d~~~~--~~--~~~~fD~i~~~~~~~~~--~----~~~~~~Lkp-gG~lv~~~~~ 184 (226)
T 1i1n_A 133 GRVQLVVGDGRMG--YA--EEAPYDAIHVGAAAPVV--P----QALIDQLKP-GGRLILPVGP 184 (226)
T ss_dssp SSEEEEESCGGGC--CG--GGCCEEEEEECSBBSSC--C----HHHHHTEEE-EEEEEEEESC
T ss_pred CcEEEEECCcccC--cc--cCCCcCEEEECCchHHH--H----HHHHHhcCC-CcEEEEEEec
Confidence 11 3444444321 11 14679999999987432 2 234455566 4577777764
No 128
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=58.59 E-value=11 Score=30.75 Aligned_cols=113 Identities=12% Similarity=-0.016 Sum_probs=66.2
Q ss_pred cccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhC-----CCCCceEEeecccc--------cccC---
Q 025067 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIR-----PEVSPKILEYDMRF--------EQYG--- 149 (258)
Q Consensus 88 SQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~-----~~~~~~LLEyD~RF--------~~~g--- 149 (258)
.|......+...+.+.+..... ++.+|+=|||=+=+..+ .+.. |..+++-+|++... ...+
T Consensus 58 ~~~~~~p~~~~~~~~~l~~~~~-~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 136 (227)
T 2pbf_A 58 GVTISAPHMHALSLKRLINVLK-PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL 136 (227)
T ss_dssp TEEECCHHHHHHHHHHHTTTSC-TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGG
T ss_pred CCccCChHHHHHHHHHHHhhCC-CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccc
Confidence 4556666777777776653333 67899999997755443 2322 44689999998533 2212
Q ss_pred ----C-ccccccCCCCCCchh--hhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 150 ----S-DFAFYDYNQPQDLPL--ELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 150 ----~-~FvfYDyn~P~~lp~--~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
. +|+.-|.... ++. .-.++||+|++++++-.- . ..+..++++ +++++++++.
T Consensus 137 ~~~~~v~~~~~d~~~~--~~~~~~~~~~fD~I~~~~~~~~~--~----~~~~~~Lkp-gG~lv~~~~~ 195 (227)
T 2pbf_A 137 LKIDNFKIIHKNIYQV--NEEEKKELGLFDAIHVGASASEL--P----EILVDLLAE-NGKLIIPIEE 195 (227)
T ss_dssp GSSTTEEEEECCGGGC--CHHHHHHHCCEEEEEECSBBSSC--C----HHHHHHEEE-EEEEEEEEEE
T ss_pred cccCCEEEEECChHhc--ccccCccCCCcCEEEECCchHHH--H----HHHHHhcCC-CcEEEEEEcc
Confidence 1 3443343321 211 114679999999987632 2 333445555 4577777764
No 129
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=58.57 E-value=8 Score=33.66 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=39.8
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccccCC---------------ccccccCCCCCCchhhhccCccE
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQYGS---------------DFAFYDYNQPQDLPLELKHAFSV 173 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~~g~---------------~FvfYDyn~P~~lp~~lk~~fD~ 173 (258)
+..+|+.|||=+=.... .+..+..++..+|+|...-.... +++.=|.. +......++||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~---~~l~~~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF---MHIAKSENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH---HHHHTCCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHH---HHHhhCCCCeeE
Confidence 56899999998655443 33224568999999965432211 12222211 111112468999
Q ss_pred EEECCCCC
Q 025067 174 VVVDPPYL 181 (258)
Q Consensus 174 Vv~DPPFl 181 (258)
||+|+|.-
T Consensus 152 Ii~d~~~~ 159 (275)
T 1iy9_A 152 IMVDSTEP 159 (275)
T ss_dssp EEESCSSC
T ss_pred EEECCCCC
Confidence 99999873
No 130
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=58.55 E-value=3.8 Score=36.13 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=12.8
Q ss_pred cCccEEEECCCCCCH
Q 025067 169 HAFSVVVVDPPYLSK 183 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (258)
.+||+|++||||-..
T Consensus 163 ~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 163 PRPQVVYLDPMFPHK 177 (258)
T ss_dssp SCCSEEEECCCCCCC
T ss_pred ccCCEEEEcCCCCCc
Confidence 469999999999764
No 131
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=58.21 E-value=9.2 Score=28.94 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=30.3
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
..+|+||+|--....+.++ +...+|........+||+.|+....+.+.+.+
T Consensus 50 ~~~dlii~D~~l~~~~g~~-~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~ 100 (154)
T 3gt7_A 50 TRPDLIISDVLMPEMDGYA-LCRWLKGQPDLRTIPVILLTILSDPRDVVRSL 100 (154)
T ss_dssp CCCSEEEEESCCSSSCHHH-HHHHHHHSTTTTTSCEEEEECCCSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHH-HHHHHHhCCCcCCCCEEEEECCCChHHHHHHH
Confidence 5689999996555444332 33444443221245788888866666666665
No 132
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=57.89 E-value=14 Score=27.01 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=37.6
Q ss_pred cCccEEEECCCCC-CHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYL-SKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFl-seec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--.. ..+.++ +...+|......+.+||+.|+....+.+.+.+..-..+|.++
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~-~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~K 110 (140)
T 3lua_A 49 DSITLIIMDIAFPVEKEGLE-VLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILK 110 (140)
T ss_dssp CCCSEEEECSCSSSHHHHHH-HHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEES
T ss_pred CCCcEEEEeCCCCCCCcHHH-HHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 5699999998776 554433 344445411112458999999877777777763334444443
No 133
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=57.69 E-value=31 Score=28.75 Aligned_cols=109 Identities=11% Similarity=0.113 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeChhH--HHHHHhhCCCCCceEEeecccc--------cccCC----ccccccCCCCCC
Q 025067 97 AETVAQEAVSLCSDSDSRVACIACPTL--YAYLKKIRPEVSPKILEYDMRF--------EQYGS----DFAFYDYNQPQD 162 (258)
Q Consensus 97 a~~La~~l~~~a~~~~~~IaclstPSl--y~~lk~~~~~~~~~LLEyD~RF--------~~~g~----~FvfYDyn~P~~ 162 (258)
...+...+......++.+|+=|||=+= -..+.+. +..+++.+|++... ...+. +|+.-|.... .
T Consensus 50 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 127 (298)
T 1ri5_A 50 NNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-H 127 (298)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-C
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-c
Confidence 334444443322226789999988642 2224432 33479999998533 22221 4555565432 1
Q ss_pred chhhhccCccEEEECCCC----CCHHHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 163 LPLELKHAFSVVVVDPPY----LSKECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 163 lp~~lk~~fD~Vv~DPPF----lseec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
+ ...++||+|++.-.+ .+.+-...+-..+..++++ ++.+++.+..
T Consensus 128 ~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~ 176 (298)
T 1ri5_A 128 M--DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP-GGYFIMTVPS 176 (298)
T ss_dssp C--CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEEEEC
T ss_pred c--CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCC-CCEEEEEECC
Confidence 1 124689999988665 4455556666666777777 5577776653
No 134
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=57.68 E-value=33 Score=29.22 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=57.3
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeeccc--------ccccC----C--ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMR--------FEQYG----S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~R--------F~~~g----~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
...+|+=|||=+=...+.-...+.+++.+|++.. +...+ . +|+.-|..+ +| +.++||+||+
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~---~~--~~~~fD~v~~ 156 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA---FA--LDKRFGTVVI 156 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB---CC--CSCCEEEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc---CC--cCCCcCEEEE
Confidence 4569999999775544332122568999999843 32222 1 466666654 22 1578998886
Q ss_pred C---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 177 D---PPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 177 D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
- -.++..+-+.++-..+..++++ ++++++.+.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~ 191 (299)
T 3g2m_A 157 SSGSINELDEADRRGLYASVREHLEP-GGKFLLSLA 191 (299)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred CCcccccCCHHHHHHHHHHHHHHcCC-CcEEEEEee
Confidence 5 3355555556666777777777 456777654
No 135
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=57.32 E-value=16 Score=26.89 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=33.1
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+| |---+.+ +.+.+|....+ ..+||+.|+......+.+.+..-..+|.++
T Consensus 51 ~~~dlvllD~~mp~~~G~~----~~~~lr~~~~~-~~~ii~lt~~~~~~~~~~~~~~ga~~~l~K 110 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGLL----STKMIRRDLGY-TSPIVALTAFADDSNIKECLESGMNGFLSK 110 (133)
T ss_dssp CCCSEEEECSCCSSSCHHH----HHHHHHHHSCC-CSCEEEEESCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCCEEEEeCCCCCCChHH----HHHHHHhhcCC-CCCEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 458899998 4333333 23334432222 347999999777776777764444555443
No 136
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=57.03 E-value=13 Score=27.19 Aligned_cols=59 Identities=12% Similarity=0.194 Sum_probs=35.5
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+|--....+.++ +...++.... ..+||+.|+....+.+.+.+..-..+|.++
T Consensus 48 ~~~dlvi~d~~l~~~~g~~-~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 106 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSGMD-ILREIKKITP--HMAVIILTGHGDLDNAILAMKEGAFEYLRK 106 (143)
T ss_dssp TTCCEEEEESCCSSSCHHH-HHHHHHHHCT--TCEEEEEECTTCHHHHHHHHHTTCSEEEES
T ss_pred CCCCEEEEeCCCCCCcHHH-HHHHHHHhCC--CCeEEEEECCCCHHHHHHHHHhCcceeEeC
Confidence 4689999996655544333 3344444322 457888888777776776663334445443
No 137
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=56.28 E-value=25 Score=28.79 Aligned_cols=104 Identities=18% Similarity=0.153 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccCC--ccccccCCCCCCch
Q 025067 97 AETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYGS--DFAFYDYNQPQDLP 164 (258)
Q Consensus 97 a~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g~--~FvfYDyn~P~~lp 164 (258)
+..+.+.+......++.+|+=|||=+=... |.+ .+.+++.+|++... ...+. .|+.=|... ++
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~---~~ 101 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE--RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE---IA 101 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG---CC
T ss_pred HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh---cc
Confidence 444555554443225679999998764433 333 24578999997533 22221 344444432 11
Q ss_pred hhhccCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 165 LELKHAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 165 ~~lk~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+.++||+|++- +++.+.+...++-..+..++++ ++.+++.+
T Consensus 102 --~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~li~~~ 145 (252)
T 1wzn_A 102 --FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKP-GGVFITDF 145 (252)
T ss_dssp --CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred --cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCC-CeEEEEec
Confidence 23679999864 4666666667777777777777 44666544
No 138
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=56.26 E-value=10 Score=30.97 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=64.7
Q ss_pred ccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccc--------ccccC--C--ccccccCC
Q 025067 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMR--------FEQYG--S--DFAFYDYN 158 (258)
Q Consensus 91 WYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~R--------F~~~g--~--~FvfYDyn 158 (258)
|+.......|.+.+..... +..+|+=|||=+=...+.-..++.+++.+|++.. +...+ . .|+.-|..
T Consensus 47 ~~~~~~~~~l~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 125 (235)
T 3lcc_A 47 WDQGRATPLIVHLVDTSSL-PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVF 125 (235)
T ss_dssp TCCSSCCHHHHHHHHTTCS-CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTT
T ss_pred cccCCCCHHHHHHHHhcCC-CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchh
Confidence 4444444556666654433 4569999999876665543235567899999853 32221 1 45566655
Q ss_pred CCCCchhhhccCccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 159 QPQDLPLELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 159 ~P~~lp~~lk~~fD~Vv~DPPFl--seec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
++. ..++||+|++-..+- ..+-..++...+..++++ +++++++
T Consensus 126 ~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 170 (235)
T 3lcc_A 126 TWR-----PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKP-DGELITL 170 (235)
T ss_dssp TCC-----CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEE-EEEEEEE
T ss_pred cCC-----CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCC-CcEEEEE
Confidence 422 134799999865553 222345666666677776 4466553
No 139
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=56.13 E-value=12 Score=28.03 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=37.9
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
...+|+||+|--....+.++ +...++... .+.+||+.|+....+.+.+.+..-..+|.++
T Consensus 64 ~~~~dlii~D~~l~~~~g~~-~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~K 123 (150)
T 4e7p_A 64 KESVDIAILDVEMPVKTGLE-VLEWIRSEK--LETKVVVVTTFKRAGYFERAVKAGVDAYVLK 123 (150)
T ss_dssp TSCCSEEEECSSCSSSCHHH-HHHHHHHTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEET
T ss_pred ccCCCEEEEeCCCCCCcHHH-HHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHCCCcEEEec
Confidence 35699999997655444333 333444432 2458999999877777777774444556554
No 140
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=55.05 E-value=15 Score=26.90 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=30.4
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
.+.+|+||+|- ....+.+ .+...++.... +.+||+.|+....+.+.+.+
T Consensus 46 ~~~~dlvi~d~-~~~~~g~-~~~~~l~~~~~--~~pii~ls~~~~~~~~~~~~ 94 (142)
T 2qxy_A 46 REKIDLVFVDV-FEGEESL-NLIRRIREEFP--DTKVAVLSAYVDKDLIINSV 94 (142)
T ss_dssp TSCCSEEEEEC-TTTHHHH-HHHHHHHHHCT--TCEEEEEESCCCHHHHHHHH
T ss_pred ccCCCEEEEeC-CCCCcHH-HHHHHHHHHCC--CCCEEEEECCCCHHHHHHHH
Confidence 35689999998 5444433 23344443322 45789988876666666665
No 141
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=54.89 E-value=16 Score=32.44 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=52.3
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccccC--------------C--ccccccCCCCCCchhhhccCcc
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQYG--------------S--DFAFYDYNQPQDLPLELKHAFS 172 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~~g--------------~--~FvfYDyn~P~~lp~~lk~~fD 172 (258)
...+|+-|||=+=.... .+..+..++..+|+|...-... . +++.=|.. ++.....++||
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~---~~l~~~~~~fD 153 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR---AYLERTEERYD 153 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH---HHHHHCCCCEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHH---HHHHhcCCCcc
Confidence 56899999987655443 3323456899999996432211 1 22222211 11112257899
Q ss_pred EEEECCCCCC---H--HH--HHHHHHHHHHhcCCCCCcEEEech
Q 025067 173 VVVVDPPYLS---K--EC--LEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 173 ~Vv~DPPFls---e--ec--~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+||+|+|.-. . +- ...+-..++.++++ ++.+++.+|
T Consensus 154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~ 196 (314)
T 1uir_A 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP-GGVMGMQTG 196 (314)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE-EEEEEEEEE
T ss_pred EEEECCCCcccccCcchhccHHHHHHHHHHhcCC-CcEEEEEcc
Confidence 9999998743 1 00 13334445566666 345655543
No 142
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=54.76 E-value=73 Score=27.83 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=54.6
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccccc-----CCccccccCCC-CCCchhhhccCccEEEECCCCC--C
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY-----GSDFAFYDYNQ-PQDLPLELKHAFSVVVVDPPYL--S 182 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~-----g~~FvfYDyn~-P~~lp~~lk~~fD~Vv~DPPFl--s 182 (258)
++.+|+=|||=+=...+.-...+.+++-+|++...-.. ...++..|+.. +..++..+.++||+||++..+. .
T Consensus 45 ~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~ 124 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRFT 124 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSC
T ss_pred CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhCC
Confidence 57899999998866554321124579999998654321 11233333322 1112344567899999998863 3
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 183 KECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 183 eec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.+=...+-..+..++ + +++++++.
T Consensus 125 ~~~~~~~l~~l~~lL-P-GG~l~lS~ 148 (261)
T 3iv6_A 125 TEEARRACLGMLSLV-G-SGTVRASV 148 (261)
T ss_dssp HHHHHHHHHHHHHHH-T-TSEEEEEE
T ss_pred HHHHHHHHHHHHHhC-c-CcEEEEEe
Confidence 322344444444444 6 55777664
No 143
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=54.68 E-value=13 Score=27.19 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=32.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--.-..+-+ .+.+.++... + ..+||+.|+......+.+.+..-..+|.++
T Consensus 48 ~~~dlvilD~~lp~~~g~-~~~~~l~~~~-~-~~~ii~ls~~~~~~~~~~~~~~ga~~~l~K 106 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMTGL-EVLAEIRKKH-L-NIKVIIVTTFKRPGYFEKAVVNDVDAYVLK 106 (133)
T ss_dssp HCCSEEEECSSCSSSCHH-HHHHHHHHTT-C-SCEEEEEESCCCHHHHHHHHHTTCSEEEET
T ss_pred cCCCEEEEecCCCCCCHH-HHHHHHHHHC-C-CCcEEEEecCCCHHHHHHHHHcCCcEEEEC
Confidence 468999999533222212 1233333321 2 457899888776666676664444555444
No 144
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=54.63 E-value=15 Score=31.01 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=60.4
Q ss_pred HHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccc--------ccccC--C--ccccccCCCCCCchhhh
Q 025067 100 VAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMR--------FEQYG--S--DFAFYDYNQPQDLPLEL 167 (258)
Q Consensus 100 La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~R--------F~~~g--~--~FvfYDyn~P~~lp~~l 167 (258)
|.+.+..... .+.+|+=|||=+=...+.-...+.+++.+|++.. +...| . +|+.-|... ++...
T Consensus 58 l~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 133 (285)
T 4htf_A 58 LDRVLAEMGP-QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQD---VASHL 133 (285)
T ss_dssp HHHHHHHTCS-SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGG---TGGGC
T ss_pred HHHHHHhcCC-CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHH---hhhhc
Confidence 3344444433 4679999998765444321112568999999853 32222 1 355556543 33334
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.++||+|++.-.+-...-..++-..+..++++ ++.+++.+.
T Consensus 134 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 174 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVADPRSVLQTLWSVLRP-GGVLSLMFY 174 (285)
T ss_dssp SSCEEEEEEESCGGGCSCHHHHHHHHHHTEEE-EEEEEEEEE
T ss_pred CCCceEEEECchhhcccCHHHHHHHHHHHcCC-CeEEEEEEe
Confidence 57899999876553211134566666777777 457777664
No 145
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=54.55 E-value=16 Score=31.09 Aligned_cols=90 Identities=9% Similarity=0.088 Sum_probs=53.4
Q ss_pred CCCeEEEEeChhHHHH--HHhh-CCCCCceEEeeccc--------cccc-C-C--ccccccCCCCCCchhhhccCccEEE
Q 025067 111 SDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMR--------FEQY-G-S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~-~~~~~~~LLEyD~R--------F~~~-g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (258)
++.+|+=+||=+=... +.+. .|..+++.+|++.. +... | + +|+.=|..++. + .++||+||
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~--~---~~~fD~Vi 184 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI--S---DQMYDAVI 184 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC--C---SCCEEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC--c---CCCccEEE
Confidence 5679999988653332 3333 46678999999753 2222 3 1 34444554432 2 25799999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHH
Q 025067 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEV 211 (258)
Q Consensus 176 ~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~ 211 (258)
+|+|-. .++-..+..++++ ++.+++++...
T Consensus 185 ~~~~~~-----~~~l~~~~~~Lkp-gG~l~i~~~~~ 214 (275)
T 1yb2_A 185 ADIPDP-----WNHVQKIASMMKP-GSVATFYLPNF 214 (275)
T ss_dssp ECCSCG-----GGSHHHHHHTEEE-EEEEEEEESSH
T ss_pred EcCcCH-----HHHHHHHHHHcCC-CCEEEEEeCCH
Confidence 999843 2233444555565 45777766543
No 146
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=54.46 E-value=76 Score=28.17 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=55.1
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeec-------ccccccC--C--ccccccCCCCC-CchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYD-------MRFEQYG--S--DFAFYDYNQPQ-DLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD-------~RF~~~g--~--~FvfYDyn~P~-~lp~~lk~~fD~Vv~ 176 (258)
+..+|+=|||=+=... |.+..|+.+++.+|.. .|+...| + +|+..|+.++. .+| ++||+|++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p----~~~D~v~~ 254 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP----TGFDAVWM 254 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC----CCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC----CCcCEEEE
Confidence 5679999988664443 4445788889999974 2333332 1 67888887653 344 57998887
Q ss_pred CCCC--CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 177 DPPY--LS-KECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 177 DPPF--ls-eec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
==-+ .+ ++|..-+ ..++..+++ +++|+++
T Consensus 255 ~~vlh~~~~~~~~~~l-~~~~~~L~p-gG~l~i~ 286 (363)
T 3dp7_A 255 SQFLDCFSEEEVISIL-TRVAQSIGK-DSKVYIM 286 (363)
T ss_dssp ESCSTTSCHHHHHHHH-HHHHHHCCT-TCEEEEE
T ss_pred echhhhCCHHHHHHHH-HHHHHhcCC-CcEEEEE
Confidence 3222 12 4554434 444455566 4677664
No 147
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=54.37 E-value=22 Score=26.59 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=35.7
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--....+.+ .+...++.... ..+||+.|+....+.+.+.+..-..+|.++
T Consensus 46 ~~~dliild~~l~~~~g~-~~~~~l~~~~~--~~pii~ls~~~~~~~~~~~~~~g~~~~l~k 104 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGL-ALFRKILALDP--DLPMILVTGHGDIPMAVQAIQDGAYDFIAK 104 (155)
T ss_dssp TCCSEEEEESCCSSSCHH-HHHHHHHHHCT--TSCEEEEECGGGHHHHHHHHHTTCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHhhCC--CCCEEEEECCCChHHHHHHHhcCCCeEEeC
Confidence 568999999655443333 23344444322 457999998877777777764434455443
No 148
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=53.81 E-value=64 Score=25.08 Aligned_cols=114 Identities=12% Similarity=-0.026 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHH--HHhhCCC---------CCceEEeecccccccCCccc-cccCCCC
Q 025067 94 AVTAETVAQEAVSLCS-DSDSRVACIACPTLYAY--LKKIRPE---------VSPKILEYDMRFEQYGSDFA-FYDYNQP 160 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~--lk~~~~~---------~~~~LLEyD~RF~~~g~~Fv-fYDyn~P 160 (258)
...+..|.+....... .++.+|+=|||=+=... |.+..+. .+++.+|++..-..-+-+|+ .-|...+
T Consensus 4 ~r~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 4 SRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDP 83 (196)
T ss_dssp STHHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSH
T ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCH
Confidence 3444555555444321 25689999988765443 3333332 57899998874321112455 5555432
Q ss_pred CC---chhhhc-cCccEEEECCCCCC-----HHH------HHHHHHHHHHhcCCCCCcEEEec
Q 025067 161 QD---LPLELK-HAFSVVVVDPPYLS-----KEC------LEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 161 ~~---lp~~lk-~~fD~Vv~DPPFls-----eec------~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.. +...+. ++||+||+|+++-. .+- ..++...+..++++ ++++++.+
T Consensus 84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~~ 145 (196)
T 2nyu_A 84 RTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP-GGTFLCKT 145 (196)
T ss_dssp HHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred HHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence 10 111233 47999999986542 111 02334445555666 45666654
No 149
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=52.06 E-value=18 Score=29.74 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=60.4
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccc--------cccC--C-ccccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRF--------EQYG--S-DFAFY 155 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF--------~~~g--~-~FvfY 155 (258)
|+.-...++..+.+.+. . . ++.+|+=|||=+=+..+ .+..+ .+++.+|++... ...| . .|+.=
T Consensus 72 ~~~~~~~~~~~~~~~l~-~-~-~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~ 147 (235)
T 1jg1_A 72 QTVSAPHMVAIMLEIAN-L-K-PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILG 147 (235)
T ss_dssp CEECCHHHHHHHHHHHT-C-C-TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred ceeccHHHHHHHHHhcC-C-C-CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC
Confidence 33444555666655552 1 2 56799999998655443 33334 689999998532 2222 1 33333
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
|...+ ++. .+.||+||++.++-.- . ..+..++++ ++++++.++.
T Consensus 148 d~~~~--~~~--~~~fD~Ii~~~~~~~~--~----~~~~~~L~p-gG~lvi~~~~ 191 (235)
T 1jg1_A 148 DGSKG--FPP--KAPYDVIIVTAGAPKI--P----EPLIEQLKI-GGKLIIPVGS 191 (235)
T ss_dssp CGGGC--CGG--GCCEEEEEECSBBSSC--C----HHHHHTEEE-EEEEEEEECS
T ss_pred CcccC--CCC--CCCccEEEECCcHHHH--H----HHHHHhcCC-CcEEEEEEec
Confidence 43222 222 2459999999876432 1 133445565 4578887763
No 150
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=51.90 E-value=13 Score=33.58 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=50.5
Q ss_pred CCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccccC-------------C--ccccccCCCCCCchhhh-ccCcc
Q 025067 111 SDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQYG-------------S--DFAFYDYNQPQDLPLEL-KHAFS 172 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~~g-------------~--~FvfYDyn~P~~lp~~l-k~~fD 172 (258)
...+|+-|||=+=+..+ .+..+..+++.+|+|...-... . +|+.=|.. ++...+ .++||
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~---~~l~~~~~~~fD 196 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGV---AFLKNAAEGSYD 196 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHH---HHHHTSCTTCEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHH---HHHHhccCCCcc
Confidence 56899999998755543 3333456899999995432211 1 22222211 111112 36799
Q ss_pred EEEECCC--CCCHHH--HHHHHHHHHHhcCCCCCcEEEe
Q 025067 173 VVVVDPP--YLSKEC--LEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 173 ~Vv~DPP--Flseec--~eK~A~Tir~L~k~~~~kiil~ 207 (258)
+||+||+ +...+- ...+-..++.++++ ++.+++.
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~ 234 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRP-GGVVCTQ 234 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEE-EEEEEEE
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCC-CcEEEEe
Confidence 9999987 332111 13344445555665 3455553
No 151
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=51.83 E-value=19 Score=26.25 Aligned_cols=62 Identities=8% Similarity=0.175 Sum_probs=36.1
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHH-HHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAA-ELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~-kll~~~~~~F~P~ 230 (258)
...+|+||+|--....+.++ +...+|........+||+.|+......+. +.+..-..+|.++
T Consensus 48 ~~~~dlvi~d~~l~~~~g~~-~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~k 110 (140)
T 3grc_A 48 RRPYAAMTVDLNLPDQDGVS-LIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEK 110 (140)
T ss_dssp HSCCSEEEECSCCSSSCHHH-HHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECS
T ss_pred hCCCCEEEEeCCCCCCCHHH-HHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeC
Confidence 35689999996655544332 23333331111245899999987766655 6665555555544
No 152
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=51.49 E-value=6.7 Score=34.86 Aligned_cols=94 Identities=16% Similarity=0.021 Sum_probs=48.9
Q ss_pred CCCeEEEEeChhHHHHHH--hhCCCCCceEEeecccccccCC---------------ccccccCCCCCCchhhhccCccE
Q 025067 111 SDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRFEQYGS---------------DFAFYDYNQPQDLPLELKHAFSV 173 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF~~~g~---------------~FvfYDyn~P~~lp~~lk~~fD~ 173 (258)
...+|+-|||=+=+..+. +..+..++..+|+|...-.... +++.=|.. ++.....++||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~---~~l~~~~~~fD~ 171 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGF---EFMKQNQDAFDV 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH---HHHHTCSSCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHH---HHHhhCCCCceE
Confidence 568999999987655443 3234568999999965432211 12211110 011112468999
Q ss_pred EEECCCCCCHHH----HHHHHHHHHHhcCCCCCcEEEec
Q 025067 174 VVVDPPYLSKEC----LEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 174 Vv~DPPFlseec----~eK~A~Tir~L~k~~~~kiil~T 208 (258)
||+|+|.-.... ...+-+.++.++++ ++.+++-+
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~ 209 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKE-DGVLCCQG 209 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEE-EEEEEEEE
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCC-CeEEEEec
Confidence 999998632100 11223334455555 34555543
No 153
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=51.38 E-value=25 Score=27.78 Aligned_cols=110 Identities=7% Similarity=-0.045 Sum_probs=62.3
Q ss_pred cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhH---HHHHHhhCCCCCceEEeecccc--------cccCC--cccccc
Q 025067 90 FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTL---YAYLKKIRPEVSPKILEYDMRF--------EQYGS--DFAFYD 156 (258)
Q Consensus 90 FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSl---y~~lk~~~~~~~~~LLEyD~RF--------~~~g~--~FvfYD 156 (258)
.+++......+++.+... . ++.+|+=|||=+= ...+.+ ++.+++.+|++... ...+. +|+.-|
T Consensus 4 ~l~~~~~~~~~~~~~~~~-~-~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d 79 (209)
T 2p8j_A 4 TIIRQPQLYRFLKYCNES-N-LDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGD 79 (209)
T ss_dssp CCCSCTHHHHHHHHHHHS-S-SCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECC
T ss_pred HhhhhhhHHHHHHHHhcc-C-CCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECc
Confidence 345555566666665544 2 5679999988542 222332 45689999998533 21221 455556
Q ss_pred CCCCCCchhhhccCccEEEECCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 157 YNQPQDLPLELKHAFSVVVVDPPY--LSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPF--lseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.... .++ .++||+|++--.+ +..+-..++-..+..++++ ++.+++.+
T Consensus 80 ~~~~-~~~---~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 128 (209)
T 2p8j_A 80 IRKL-PFK---DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKP-GGLACINF 128 (209)
T ss_dssp TTSC-CSC---TTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred hhhC-CCC---CCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCC-CcEEEEEE
Confidence 5431 111 3679999986443 3334456666666666776 44565544
No 154
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=51.27 E-value=12 Score=27.04 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=32.2
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh--CCcccceee
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL--GLRPCGFRP 229 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll--~~~~~~F~P 229 (258)
.+.+|+||+|--....+.++ +...+|... ...+||+.|+......+.+.+ |..-.-.+|
T Consensus 49 ~~~~dlvi~d~~l~~~~g~~-~~~~l~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP 109 (130)
T 3eod_A 49 GFTPDLMICDIAMPRMNGLK-LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKP 109 (130)
T ss_dssp TCCCSEEEECCC-----CHH-HHHHHHHTT--CCCCEEEEECCCCHHHHHHHHHHCCSEEEESC
T ss_pred cCCCCEEEEecCCCCCCHHH-HHHHHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCC
Confidence 35699999996544433322 223334322 245899999977777666666 544333333
No 155
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=51.12 E-value=23 Score=25.31 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=32.5
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+|--....+-+ .+...++... + ..+||+.|+......+.+.+..-..+|.++
T Consensus 46 ~~~dlvi~D~~l~~~~g~-~~~~~l~~~~-~-~~~ii~~s~~~~~~~~~~~~~~ga~~~l~K 104 (126)
T 1dbw_A 46 VRNGVLVTDLRMPDMSGV-ELLRNLGDLK-I-NIPSIVITGHGDVPMAVEAMKAGAVDFIEK 104 (126)
T ss_dssp CCSEEEEEECCSTTSCHH-HHHHHHHHTT-C-CCCEEEEECTTCHHHHHHHHHTTCSEEEES
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHhcC-C-CCCEEEEECCCCHHHHHHHHHhCHHHheeC
Confidence 468999999432221111 1223333322 2 457999998777666777763334455443
No 156
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=50.86 E-value=24 Score=26.25 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=29.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
..+|+||+|--....+.+ .+...++.... ..+||++|+....+.+.+.+
T Consensus 50 ~~~dlvi~d~~l~~~~g~-~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~ 98 (154)
T 2rjn_A 50 TSVQLVISDMRMPEMGGE-VFLEQVAKSYP--DIERVVISGYADAQATIDAV 98 (154)
T ss_dssp SCCSEEEEESSCSSSCHH-HHHHHHHHHCT--TSEEEEEECGGGHHHHHHHH
T ss_pred CCCCEEEEecCCCCCCHH-HHHHHHHHhCC--CCcEEEEecCCCHHHHHHHH
Confidence 468999999655443332 23344444322 35788888877766666665
No 157
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=50.79 E-value=12 Score=30.01 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeecccc--------cccCC--------ccccccCCCCCCchhhhccCccEE
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRF--------EQYGS--------DFAFYDYNQPQDLPLELKHAFSVV 174 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF--------~~~g~--------~FvfYDyn~P~~lp~~lk~~fD~V 174 (258)
++.+|+=|||=+=...+.-...+.+++.+|++... ...+- +|+.-|... +| .-.++||+|
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~-~~~~~~D~v 105 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS---LS-FHDSSFDFA 105 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS---CC-SCTTCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc---cC-CCCCceeEE
Confidence 56899999987644433211124589999997532 11111 344555443 22 113679999
Q ss_pred EECCCCCC---HHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 175 VVDPPYLS---KECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 175 v~DPPFls---eec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
++...+.. .+-+.++-..++.++++ ++++++++
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 141 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP-GAYLYLVE 141 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC-CeEEEEEE
Confidence 99766552 33233566666667776 45676654
No 158
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=50.71 E-value=18 Score=27.38 Aligned_cols=58 Identities=5% Similarity=0.118 Sum_probs=37.0
Q ss_pred CccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 170 AFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 170 ~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+|+||+|--....+.++ +.+.+|.... ..+||+.|+....+.+.+.+..-..+|.++
T Consensus 83 ~~dliilD~~l~~~~g~~-~~~~lr~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~K 140 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGIT-CLSNIMEFDK--NARVIMISALGKEQLVKDCLIKGAKTFIVK 140 (157)
T ss_dssp GCCEEEECSSCSSSCHHH-HHHHHHHHCT--TCCEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeccCCCccHHH-HHHHHHhhCC--CCcEEEEeccCcHHHHHHHHHcCCCEEEeC
Confidence 689999997665544433 3344454432 458999999877777777764444555444
No 159
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=50.68 E-value=28 Score=29.03 Aligned_cols=103 Identities=15% Similarity=0.072 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccccc-----CCccccccCCCCCCchhhhccC
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY-----GSDFAFYDYNQPQDLPLELKHA 170 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~-----g~~FvfYDyn~P~~lp~~lk~~ 170 (258)
..+.+.+..... ++.+|+=|||=+=... |.+ .+.+++.+|++...-.. ...|+.-|... +| .-.++
T Consensus 42 ~~~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~---~~-~~~~~ 114 (260)
T 2avn_A 42 RLIGSFLEEYLK-NPCRVLDLGGGTGKWSLFLQE--RGFEVVLVDPSKEMLEVAREKGVKNVVEAKAED---LP-FPSGA 114 (260)
T ss_dssp HHHHHHHHHHCC-SCCEEEEETCTTCHHHHHHHT--TTCEEEEEESCHHHHHHHHHHTCSCEEECCTTS---CC-SCTTC
T ss_pred HHHHHHHHHhcC-CCCeEEEeCCCcCHHHHHHHH--cCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHH---CC-CCCCC
Confidence 344555555544 6689999998764433 333 24579999998654322 12355555543 22 11368
Q ss_pred ccEEEECCCCCC--HHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 171 FSVVVVDPPYLS--KECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 171 fD~Vv~DPPFls--eec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
||+|++..++.. .+ ...+-..++.++++ ++++++.+.
T Consensus 115 fD~v~~~~~~~~~~~~-~~~~l~~~~~~Lkp-gG~l~~~~~ 153 (260)
T 2avn_A 115 FEAVLALGDVLSYVEN-KDKAFSEIRRVLVP-DGLLIATVD 153 (260)
T ss_dssp EEEEEECSSHHHHCSC-HHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred EEEEEEcchhhhcccc-HHHHHHHHHHHcCC-CeEEEEEeC
Confidence 999998654321 22 34555556666676 457776654
No 160
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=50.59 E-value=6.2 Score=29.06 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=31.0
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+.+|+||+|--....+.++ +...+|......+.+||+.|+....+.+.+.+..-..+|.++
T Consensus 44 ~~~~dlvi~D~~l~~~~g~~-~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 105 (140)
T 3n53_A 44 HHHPDLVILDMDIIGENSPN-LCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTK 105 (140)
T ss_dssp HHCCSEEEEETTC------C-HHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEES
T ss_pred cCCCCEEEEeCCCCCCcHHH-HHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeC
Confidence 35689999997665544332 223333322112457899998777766666664445555554
No 161
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=50.58 E-value=14 Score=29.02 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=34.9
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.||+||+| |---+-|. .+.+|........+||++|+....+.+.+.+..-..+|-.+
T Consensus 56 ~~~DlillD~~MP~mdG~el----~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~K 116 (134)
T 3to5_A 56 GDFDFVVTDWNMPGMQGIDL----LKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVK 116 (134)
T ss_dssp HCCSEEEEESCCSSSCHHHH----HHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEES
T ss_pred CCCCEEEEcCCCCCCCHHHH----HHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 567888888 33334433 34455433322457999999888887777764444555443
No 162
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=50.46 E-value=1e+02 Score=25.33 Aligned_cols=94 Identities=9% Similarity=-0.016 Sum_probs=57.1
Q ss_pred CCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeeccc--------------ccccC--C--cccccc-CCCCCCchhhhc
Q 025067 111 SDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMR--------------FEQYG--S--DFAFYD-YNQPQDLPLELK 168 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~R--------------F~~~g--~--~FvfYD-yn~P~~lp~~lk 168 (258)
++.+|+=|||=+=+..+ .+. .|..+++-+|++.. +...| . +|+.-| +.. ..+| .-.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~-~~~ 120 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD-DLGP-IAD 120 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT-CCGG-GTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh-ccCC-CCC
Confidence 57899999997655443 333 35578999999875 22222 1 344444 321 1222 113
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
++||+|++..++-...-...+.+.++.|.++ ++++++.
T Consensus 121 ~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~-gG~l~~~ 158 (275)
T 3bkx_A 121 QHFDRVVLAHSLWYFASANALALLFKNMAAV-CDHVDVA 158 (275)
T ss_dssp CCCSEEEEESCGGGSSCHHHHHHHHHHHTTT-CSEEEEE
T ss_pred CCEEEEEEccchhhCCCHHHHHHHHHHHhCC-CCEEEEE
Confidence 7899999988764322234577888888886 4567664
No 163
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=50.08 E-value=12 Score=34.75 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=58.8
Q ss_pred cccCcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeC-h---hHHHHHHhhCCCCCceEEeecc-cccc-----
Q 025067 78 VALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIAC-P---TLYAYLKKIRPEVSPKILEYDM-RFEQ----- 147 (258)
Q Consensus 78 ~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~Iaclst-P---Sly~~lk~~~~~~~~~LLEyD~-RF~~----- 147 (258)
+.++.+.+-.-|=||-.+-+..|+-.++... ++.+|+=+|+ | |++-+ .......++-.|.+. |...
T Consensus 117 ~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~--pg~~VLD~CAaPGGKT~~la--~~~~~~~l~A~D~~~~R~~~l~~~l 192 (359)
T 4fzv_A 117 FPPARPGSLGVMEYYLMDAASLLPVLALGLQ--PGDIVLDLCAAPGGKTLALL--QTGCCRNLAANDLSPSRIARLQKIL 192 (359)
T ss_dssp CCCCCBCTTSSBSEEEECGGGHHHHHHHCCC--TTEEEEESSCTTCHHHHHHH--HTTCEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCcccCceeccchhhhCHHHHHHHHHhCCC--CCCEEEEecCCccHHHHHHH--HhcCCCcEEEEcCCHHHHHHHHHHH
Confidence 4577788888888888888888888877653 4667765554 3 34322 222233566777763 2211
Q ss_pred --cC-------C--ccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 148 --YG-------S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 148 --~g-------~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
+| . ..+.+|. ..++....+.||.||+|||=-+
T Consensus 193 ~r~~~~~~~~~~~v~v~~~D~---~~~~~~~~~~fD~VLlDaPCSg 235 (359)
T 4fzv_A 193 HSYVPEEIRDGNQVRVTSWDG---RKWGELEGDTYDRVLVDVPCTT 235 (359)
T ss_dssp HHHSCTTTTTSSSEEEECCCG---GGHHHHSTTCEEEEEEECCCCC
T ss_pred HHhhhhhhccCCceEEEeCch---hhcchhccccCCEEEECCccCC
Confidence 11 1 1223332 3344555678999999999655
No 164
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=49.04 E-value=15 Score=26.90 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=37.3
Q ss_pred cCccEEEECCCCCC--HHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLS--KECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFls--eec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--... .+.++ +...+|... ...+||+.|+....+.+.+.+..-..+|.++
T Consensus 49 ~~~dlvi~D~~l~~~~~~g~~-~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~K 109 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKDSGIE-LLETLVKRG--FHLPTIVMASSSDIPTAVRAMRASAADFIEK 109 (136)
T ss_dssp TTEEEEEEETTGGGBTTHHHH-HHHHHHHTT--CCCCEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred cCCCEEEEeCcCCCCCccHHH-HHHHHHhCC--CCCCEEEEEcCCCHHHHHHHHHcChHHheeC
Confidence 56999999976655 44433 334444432 2458999999877777777764444555443
No 165
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=48.98 E-value=23 Score=25.31 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=34.3
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+.+|+||+|--....+-++ + ++.|.+....+||+.|+......+.+.+..-..+|-++
T Consensus 44 ~~~~dlii~D~~~p~~~g~~-~---~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~K 102 (120)
T 3f6p_A 44 ELQPDLILLDIMLPNKDGVE-V---CREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTK 102 (120)
T ss_dssp TTCCSEEEEETTSTTTHHHH-H---HHHHHTTCCSCEEEEEESSCHHHHHHHHHTTCCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCHHH-H---HHHHHhcCCCCEEEEECCCChHHHHHHHhCCcceeEcC
Confidence 35689999996544443332 2 33333323457999998777766666664334455443
No 166
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=48.91 E-value=23 Score=25.60 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=34.3
Q ss_pred ccCccEEEECCCCC-----CHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 168 KHAFSVVVVDPPYL-----SKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 168 k~~fD~Vv~DPPFl-----seec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
.+.+|+||+|--.. ..+.+ .+...++.... ..+||+.|+......+.+.+..-..+|.+
T Consensus 45 ~~~~dlvi~d~~~~~~~~~~~~g~-~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 108 (140)
T 2qr3_A 45 EENPEVVLLDMNFTSGINNGNEGL-FWLHEIKRQYR--DLPVVLFTAYADIDLAVRGIKEGASDFVV 108 (140)
T ss_dssp HSCEEEEEEETTTTC-----CCHH-HHHHHHHHHCT--TCCEEEEEEGGGHHHHHHHHHTTCCEEEE
T ss_pred cCCCCEEEEeCCcCCCCCCCccHH-HHHHHHHhhCc--CCCEEEEECCCCHHHHHHHHHcCchheee
Confidence 35689999996554 32222 23344444322 45799999877777777776333344433
No 167
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=48.88 E-value=23 Score=26.35 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=35.3
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+.+|+||+|--....+.+ .+...++.... ..+||+.|+......+.+.+..-..+|.++
T Consensus 49 ~~~~dlii~D~~l~~~~g~-~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 108 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGGI-EATRHIRQWDG--AARILIFTMHQGSAFALKAFEAGASGYVTK 108 (153)
T ss_dssp TTCCSEEEECSCCSSSCHH-HHHHHHHHHCT--TCCEEEEESCCSHHHHHHHHHTTCSEEEET
T ss_pred cCCCCEEEEecCCCCCCHH-HHHHHHHHhCC--CCeEEEEECCCCHHHHHHHHHCCCcEEEec
Confidence 3568999999655443332 23344444422 357888888776666666663334444443
No 168
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=48.71 E-value=15 Score=29.80 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=33.7
Q ss_pred CccEEEECCCCCCHHHHHHHHHHHHHhcCC--CCCcEEEechHH-HHHHHHHHhCCcccceeec
Q 025067 170 AFSVVVVDPPYLSKECLEKVSETVSFLARP--GDSKLLLLTGEV-QKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 170 ~fD~Vv~DPPFlseec~eK~A~Tir~L~k~--~~~kiil~Tg~~-me~~i~kll~~~~~~F~P~ 230 (258)
.+|+||+|--.-..+.++ +...+|..... ...+||++|+.. ..+.+.+.+..-..+|.++
T Consensus 119 ~~dlillD~~lp~~~G~e-l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~K 181 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYE-ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDK 181 (206)
T ss_dssp SCSEEEEESCCSSSCHHH-HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEET
T ss_pred CCCEEEEcCCCCCCCHHH-HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcC
Confidence 689999994333322222 34445544111 145899999976 5566666663334455544
No 169
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=48.61 E-value=23 Score=29.59 Aligned_cols=93 Identities=17% Similarity=0.059 Sum_probs=54.0
Q ss_pred CCCeEEEEeChhHHHHHH--hhCCCCCceEEeeccc--------ccccCC--ccccccCCCCCCchhhh-ccCccEEEEC
Q 025067 111 SDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMR--------FEQYGS--DFAFYDYNQPQDLPLEL-KHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~R--------F~~~g~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~D 177 (258)
+++||+=|||=+=+.... +..| .+++.+|++.- +...+. .+++-|.. .+...+ .++||.|+.|
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~---~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWE---DVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHH---HHGGGSCTTCEEEEEEC
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHH---hhcccccccCCceEEEe
Confidence 678999999987665543 2222 36888998842 222332 33333321 112222 4679999999
Q ss_pred CCCCCHH-----HHHHHHHHHHHhcCCCCCcEEEec
Q 025067 178 PPYLSKE-----CLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 178 PPFlsee-----c~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+...... -.+++..-+..++|| ++++++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~rvLkP-GG~l~f~~ 170 (236)
T 3orh_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKP-GGVLTYCN 170 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEE-EEEEEECC
T ss_pred eeecccchhhhcchhhhhhhhhheeCC-CCEEEEEe
Confidence 8765432 123444445667777 55777765
No 170
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=48.47 E-value=35 Score=27.14 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccccc-----C-C-ccccccCCCCCCchhhhc
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY-----G-S-DFAFYDYNQPQDLPLELK 168 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~-----g-~-~FvfYDyn~P~~lp~~lk 168 (258)
..+.+.+... ++.+|+=|||=+=... |.+. +.+++.+|++...-.. + . +|+.-|..+ +|..
T Consensus 35 ~~~l~~~~~~---~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~---~~~~-- 104 (220)
T 3hnr_A 35 EDILEDVVNK---SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLS---FEVP-- 104 (220)
T ss_dssp HHHHHHHHHT---CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSS---CCCC--
T ss_pred HHHHHHhhcc---CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhh---cCCC--
Confidence 3445554433 5679999998664443 3332 4589999998643221 1 1 455555443 2222
Q ss_pred cCccEEEECCCCCCHHHHHH--HHHHHHHhcCCCCCcEEEec
Q 025067 169 HAFSVVVVDPPYLSKECLEK--VSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK--~A~Tir~L~k~~~~kiil~T 208 (258)
++||+|++.-.+-.-.-... +-..+..++++ ++.+++++
T Consensus 105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 145 (220)
T 3hnr_A 105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNK-GGKIVFAD 145 (220)
T ss_dssp SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT-TCEEEEEE
T ss_pred CCeEEEEECcchhcCChHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 78999999876543221222 55556667777 56777764
No 171
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=48.35 E-value=18 Score=32.23 Aligned_cols=103 Identities=13% Similarity=0.070 Sum_probs=54.4
Q ss_pred ccccc-cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeeccccccc--------C--C--
Q 025067 85 WRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY--------G--S-- 150 (258)
Q Consensus 85 wqlSQ-FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~~--------g--~-- 150 (258)
|..+. ||++....++. .+.+... ++.+|+=++|=+=+.+|.-. ....+++-.|.+..--.+ | +
T Consensus 101 ~D~~k~~f~~~~~~er~--ri~~~~~-~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v 177 (278)
T 3k6r_A 101 LDVAKIMFSPANVKERV--RMAKVAK-PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM 177 (278)
T ss_dssp EETTTSCCCGGGHHHHH--HHHHHCC-TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE
T ss_pred EeccceEEcCCcHHHHH--HHHHhcC-CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence 33444 88888777763 2333333 55677766665444433211 123457777776321110 1 1
Q ss_pred ccccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
.++.-|... ++ .++.||+||++||+.+.+-|.. +++.| ++
T Consensus 178 ~~~~~D~~~---~~--~~~~~D~Vi~~~p~~~~~~l~~---a~~~l-k~ 217 (278)
T 3k6r_A 178 SAYNMDNRD---FP--GENIADRILMGYVVRTHEFIPK---ALSIA-KD 217 (278)
T ss_dssp EEECSCTTT---CC--CCSCEEEEEECCCSSGGGGHHH---HHHHE-EE
T ss_pred EEEeCcHHH---hc--cccCCCEEEECCCCcHHHHHHH---HHHHc-CC
Confidence 122223221 11 1467999999999999876653 34544 44
No 172
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=48.04 E-value=64 Score=25.61 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccccCCccccccCCCCCCchhhhccCccEE
Q 025067 95 VTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYDYNQPQDLPLELKHAFSVV 174 (258)
Q Consensus 95 ~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~V 174 (258)
.....+.+.+... . +..+|+=|||=+=.....- ..+++.+|++.. .-+|+.-|..+ ..++ .++||+|
T Consensus 53 ~~~~~~~~~l~~~-~-~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----~~~~~~~d~~~-~~~~---~~~fD~v 119 (215)
T 2zfu_A 53 QPVDRIARDLRQR-P-ASLVVADFGCGDCRLASSI---RNPVHCFDLASL----DPRVTVCDMAQ-VPLE---DESVDVA 119 (215)
T ss_dssp CHHHHHHHHHHTS-C-TTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----STTEEESCTTS-CSCC---TTCEEEE
T ss_pred hHHHHHHHHHhcc-C-CCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----CceEEEecccc-CCCC---CCCEeEE
Confidence 3445566666544 2 5679999999776554432 257888888876 12455555543 1111 3679999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 175 VVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 175 v~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
++-..+-..+. ..+-..+..++++ ++.+++++
T Consensus 120 ~~~~~l~~~~~-~~~l~~~~~~L~~-gG~l~i~~ 151 (215)
T 2zfu_A 120 VFCLSLMGTNI-RDFLEEANRVLKP-GGLLKVAE 151 (215)
T ss_dssp EEESCCCSSCH-HHHHHHHHHHEEE-EEEEEEEE
T ss_pred EEehhccccCH-HHHHHHHHHhCCC-CeEEEEEE
Confidence 99877654443 4444555556666 45676653
No 173
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=47.95 E-value=7.4 Score=33.89 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=36.9
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeecc-------cc--------cccC--C--ccccccCCCCCCchhhhc---
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDM-------RF--------EQYG--S--DFAFYDYNQPQDLPLELK--- 168 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~-------RF--------~~~g--~--~FvfYDyn~P~~lp~~lk--- 168 (258)
++.+|+=++|=+=...+.-...+.+++.+|++. .- +..+ . .|+.=|.. ++...+.
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~---~~l~~~~~~~ 159 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA---EQMPALVKTQ 159 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHH---HHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHH---HHHHhhhccC
Confidence 346787777765544432111245899999998 11 1111 1 23332321 1112233
Q ss_pred cCccEEEECCCCCCH
Q 025067 169 HAFSVVVVDPPYLSK 183 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (258)
++||+|++||||-..
T Consensus 160 ~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 160 GKPDIVYLDPMYPER 174 (258)
T ss_dssp CCCSEEEECCCC---
T ss_pred CCccEEEECCCCCCc
Confidence 689999999999764
No 174
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=47.81 E-value=30 Score=29.70 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCCeEEEEeChhHHHHHH---hhCCCCCceEEeeccc--------ccccCC----ccccccCCCCCCchhhhccCccEEE
Q 025067 111 SDSRVACIACPTLYAYLK---KIRPEVSPKILEYDMR--------FEQYGS----DFAFYDYNQPQDLPLELKHAFSVVV 175 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk---~~~~~~~~~LLEyD~R--------F~~~g~----~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (258)
++.+|+=|||=+=...+. ...++.+++.+|++.. +...|- +|+.=|..+ +| +.++||+|+
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~--~~~~fD~v~ 192 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK---LD--TREGYDLLT 192 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG---CC--CCSCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc---CC--ccCCeEEEE
Confidence 678999999987655543 2356778999999853 322221 344444432 22 127899999
Q ss_pred ECCCCC---CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 176 VDPPYL---SKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 176 ~DPPFl---seec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+.+++. ..+....+-..+..++++ ++++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 227 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKP-GGALVTSF 227 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEE-EEEEEEEC
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCC-CeEEEEEe
Confidence 998875 444333455556666676 45677665
No 175
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=47.78 E-value=13 Score=27.69 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=35.8
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
...+|+||+|--....+.++ +...++... ...+||+.|+......+.+.+..-..+|.++
T Consensus 59 ~~~~dlii~d~~l~~~~g~~-~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 118 (152)
T 3eul_A 59 AHLPDVALLDYRMPGMDGAQ-VAAAVRSYE--LPTRVLLISAHDEPAIVYQALQQGAAGFLLK 118 (152)
T ss_dssp HHCCSEEEEETTCSSSCHHH-HHHHHHHTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEET
T ss_pred hcCCCEEEEeCCCCCCCHHH-HHHHHHhcC--CCCeEEEEEccCCHHHHHHHHHcCCCEEEec
Confidence 35689999995544433332 233334332 2457899998877777777764444555544
No 176
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=47.76 E-value=7.7 Score=32.81 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=54.6
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc-----cCC-ccccccCCCCCCchhhhccCccEEEECCCCCCHH
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ-----YGS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE 184 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~-----~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee 184 (258)
++.+|+=|||=+=...+.-..++.+++.+|++...-. ++. .|+.-|... +| +.++||+|++--.+..-.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~---~~--~~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARN---FR--VDKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTT---CC--CSSCEEEEEEESCGGGCS
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhh---CC--cCCCcCEEEEcchhhhCc
Confidence 5679999998764443221125678999999754321 122 566666543 33 247899999876653211
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEech
Q 025067 185 CLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 185 c~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
-..++-..++.++++ ++.+++.+.
T Consensus 132 d~~~~l~~~~~~Lkp-gG~l~~~~~ 155 (279)
T 3ccf_A 132 EPEAAIASIHQALKS-GGRFVAEFG 155 (279)
T ss_dssp CHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred CHHHHHHHHHHhcCC-CcEEEEEec
Confidence 134455555666666 456766554
No 177
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=47.50 E-value=13 Score=30.10 Aligned_cols=104 Identities=11% Similarity=0.069 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccccc-------CC-ccccccCCCCCCchhh
Q 025067 97 AETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY-------GS-DFAFYDYNQPQDLPLE 166 (258)
Q Consensus 97 a~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~-------g~-~FvfYDyn~P~~lp~~ 166 (258)
...+.+.+..... ++.+|+=|||=+=... +.+. +.+++.+|++...-.. .. +|+.-|..+. .++
T Consensus 40 ~~~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-~~~-- 113 (242)
T 3l8d_A 40 RSTIIPFFEQYVK-KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL-PFE-- 113 (242)
T ss_dssp TTTHHHHHHHHSC-TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBC-SSC--
T ss_pred HHHHHHHHHHHcC-CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcC-CCC--
Confidence 3455666666555 6789999998775443 3332 4588999998643221 11 4555555431 111
Q ss_pred hccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 167 LKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 167 lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.++||+|++--.+-...-..++...+..++++ ++.+++.+
T Consensus 114 -~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~ 153 (242)
T 3l8d_A 114 -NEQFEAIMAINSLEWTEEPLRALNEIKRVLKS-DGYACIAI 153 (242)
T ss_dssp -TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred -CCCccEEEEcChHhhccCHHHHHHHHHHHhCC-CeEEEEEE
Confidence 46899998866554332234556666667776 45676655
No 178
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=47.48 E-value=66 Score=29.03 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCh--hHHHHHHhhCCCCCceEEeeccc
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACP--TLYAYLKKIRPEVSPKILEYDMR 144 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstP--Sly~~lk~~~~~~~~~LLEyD~R 144 (258)
+.|+...+-... +.++|++||-= ++-..+.+..+-.++.+.|+|..
T Consensus 71 E~l~h~~l~~~p-~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~ 118 (294)
T 3o4f_A 71 EMMTHVPLLAHG-HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAG 118 (294)
T ss_dssp HHHHHHHHHHSS-CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHH
T ss_pred HHHHHHHHhhCC-CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHH
Confidence 345554444433 67899999853 33333333234468999999965
No 179
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=46.74 E-value=40 Score=27.48 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=59.3
Q ss_pred HHHHHhhcC-CCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccCC-ccccccCCCCCCchhhhc
Q 025067 101 AQEAVSLCS-DSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYGS-DFAFYDYNQPQDLPLELK 168 (258)
Q Consensus 101 a~~l~~~a~-~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g~-~FvfYDyn~P~~lp~~lk 168 (258)
++.+++... .++.+|+=|||=+=... +.+.. +.+++.+|++... ...+. +|+.-|.... .++ .
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~---~ 118 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-EFP---E 118 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-CCC---T
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-CCC---C
Confidence 444444432 25679999998764333 33322 4589999998632 22122 5666666542 122 3
Q ss_pred cCccEEEECCCCCCH--HHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 169 HAFSVVVVDPPYLSK--ECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse--ec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
++||+|++--.+..- +-...+-..+..++++ ++++++.+
T Consensus 119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 159 (266)
T 3ujc_A 119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKP-TGTLLITD 159 (266)
T ss_dssp TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCC-CCEEEEEE
Confidence 689999987655442 3345565666666776 45676654
No 180
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=46.65 E-value=27 Score=28.02 Aligned_cols=104 Identities=12% Similarity=0.015 Sum_probs=56.9
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC-CCCceEEeecccccc--------cC--C--cccccc
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP-EVSPKILEYDMRFEQ--------YG--S--DFAFYD 156 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~-~~~~~LLEyD~RF~~--------~g--~--~FvfYD 156 (258)
.+..+...|...+... +..+|+=|||=+=+..+. +..+ +.+++.+|++...-. .| . +|+.=|
T Consensus 40 ~~~~~~~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 116 (210)
T 3c3p_A 40 VDRQTGRLLYLLARIK---QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGD 116 (210)
T ss_dssp CCHHHHHHHHHHHHHH---CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESC
T ss_pred cCHHHHHHHHHHHHhh---CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 4566666555444333 457999999977665543 3334 568999999864422 11 0 122222
Q ss_pred CCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 157 YNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
.. ++...+.+ ||+|++|.+.... ..+-..+..++++ ++.|++
T Consensus 117 ~~---~~~~~~~~-fD~v~~~~~~~~~---~~~l~~~~~~Lkp-gG~lv~ 158 (210)
T 3c3p_A 117 PL---GIAAGQRD-IDILFMDCDVFNG---ADVLERMNRCLAK-NALLIA 158 (210)
T ss_dssp HH---HHHTTCCS-EEEEEEETTTSCH---HHHHHHHGGGEEE-EEEEEE
T ss_pred HH---HHhccCCC-CCEEEEcCChhhh---HHHHHHHHHhcCC-CeEEEE
Confidence 11 11122346 9999999775432 3333334445555 345554
No 181
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=45.88 E-value=16 Score=26.00 Aligned_cols=49 Identities=8% Similarity=0.157 Sum_probs=27.2
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
+.+|+||+|--....+-+ .+.+.++... + ..+||+.|+....+.+.+.+
T Consensus 46 ~~~dlvl~D~~l~~~~g~-~~~~~l~~~~-~-~~~ii~~s~~~~~~~~~~~~ 94 (124)
T 1srr_A 46 ERPDLVLLDMKIPGMDGI-EILKRMKVID-E-NIRVIIMTAYGELDMIQESK 94 (124)
T ss_dssp HCCSEEEEESCCTTCCHH-HHHHHHHHHC-T-TCEEEEEESSCCHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCHH-HHHHHHHHhC-C-CCCEEEEEccCchHHHHHHH
Confidence 568999998433222112 1233334332 2 45788888876666666665
No 182
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=45.62 E-value=21 Score=25.56 Aligned_cols=61 Identities=7% Similarity=0.057 Sum_probs=34.1
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+|--....+.+ .+.+.++........+||+.|+....+.+.+.+.....+|.++
T Consensus 54 ~~~dlvi~d~~~~~~~g~-~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~k 114 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGR-EVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITK 114 (140)
T ss_dssp CCCSEEEECSSCSSSCHH-HHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEEC
T ss_pred CCCcEEEEecCCCcccHH-HHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecC
Confidence 468999999654433322 2333444432101347888888776666666664444445443
No 183
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=45.57 E-value=19 Score=26.97 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=35.3
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCc-ccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLR-PCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~-~~~F~P~ 230 (258)
...+|+||+|--....+.++ +...++.... ..+||+.|+......+.+.+..- ..+|.++
T Consensus 56 ~~~~dlvi~D~~l~~~~g~~-~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~K 116 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDGPT-LLARIHQQYP--STTRILLTGDPDLKLIAKAINEGEIYRYLSK 116 (153)
T ss_dssp HSCCSEEEEESCCSSSCHHH-HHHHHHHHCT--TSEEEEECCCCCHHHHHHHHHTTCCSEEECS
T ss_pred cCCCCEEEEeCCCCcCcHHH-HHHHHHhHCC--CCeEEEEECCCCHHHHHHHHhCCCcceEEeC
Confidence 35689999996554444333 2333444322 45789999877777777776333 3444433
No 184
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=45.56 E-value=41 Score=28.89 Aligned_cols=93 Identities=16% Similarity=0.065 Sum_probs=55.8
Q ss_pred cccccc-cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccccccC-C------cccc
Q 025067 84 DWRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQYG-S------DFAF 154 (258)
Q Consensus 84 DwqlSQ-FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~~g-~------~Fvf 154 (258)
...+.| |.-+...++.|++.+.-. ++.+|+=|||=+=.....-. .+..+++.+|+|.+.-... . +++.
T Consensus 6 ~k~~GQnfl~d~~i~~~iv~~~~~~---~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~ 82 (249)
T 3ftd_A 6 KKSFGQHLLVSEGVLKKIAEELNIE---EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVIN 82 (249)
T ss_dssp --CCCSSCEECHHHHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEEC
T ss_pred CCcccccccCCHHHHHHHHHhcCCC---CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEE
Confidence 456788 777777877777766432 56789989887755443321 2346899999999876541 1 2333
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
=|..+ .+++. +.+.+ +||.+|||--
T Consensus 83 ~D~~~-~~~~~-~~~~~-~vv~NlPy~i 107 (249)
T 3ftd_A 83 EDASK-FPFCS-LGKEL-KVVGNLPYNV 107 (249)
T ss_dssp SCTTT-CCGGG-SCSSE-EEEEECCTTT
T ss_pred cchhh-CChhH-ccCCc-EEEEECchhc
Confidence 33321 11222 22233 8999999964
No 185
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=45.43 E-value=24 Score=30.64 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=49.3
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccccCCccc-cc--cCCCCC-C-----chhhhccCccEEEECCC
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQYGSDFA-FY--DYNQPQ-D-----LPLELKHAFSVVVVDPP 179 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~g~~Fv-fY--Dyn~P~-~-----lp~~lk~~fD~Vv~DPP 179 (258)
...+|+-|||=+-+.. +.+. + .++...|+|...-....++. .. .+..|. . .-+.+ ++||+||+|.+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d~~ 148 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCLQE 148 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEESSC
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEECCC
Confidence 4579999999876654 3343 5 78999999977654432221 10 011110 0 00112 67999999964
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 180 YLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 180 Flseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
-- . . +-..++.++++ ++.+++.+|
T Consensus 149 dp-~---~-~~~~~~~~L~p-gG~lv~~~~ 172 (262)
T 2cmg_A 149 PD-I---H-RIDGLKRMLKE-DGVFISVAK 172 (262)
T ss_dssp CC-H---H-HHHHHHTTEEE-EEEEEEEEE
T ss_pred Ch-H---H-HHHHHHHhcCC-CcEEEEEcC
Confidence 21 1 1 23344455555 345555443
No 186
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=45.41 E-value=38 Score=24.11 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=35.6
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHH-----HHHHHHhCCcccceeec
Q 025067 171 FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQK-----ERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 171 fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me-----~~i~kll~~~~~~F~P~ 230 (258)
+|+||+|--....+.++ +...++... ...+||+.|+.... +.+.+.++....+|.++
T Consensus 47 ~dlvi~D~~l~~~~g~~-~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~K 108 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIE-VIRHLAEHK--SPASLILISGYDSGVLHSAETLALSCGLNVINTFTK 108 (135)
T ss_dssp TEEEEEECCTTTTHHHH-HHHHHHHTT--CCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CCEEEEeCCCCCCCHHH-HHHHHHhCC--CCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCC
Confidence 89999997766655433 333344322 24588998886653 44556666666666655
No 187
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=45.33 E-value=23 Score=26.33 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=33.4
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCC--CCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARP--GDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~--~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
.+.+|+||+|--.-..+-++ +...+|.+... ...+||+.|+....+.+.+.+..-..+|.+
T Consensus 56 ~~~~dlvl~D~~mp~~~g~~-~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~ 118 (143)
T 3m6m_D 56 EEDYDAVIVDLHMPGMNGLD-MLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLA 118 (143)
T ss_dssp HSCCSEEEEESCCSSSCHHH-HHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHH-HHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheee
Confidence 46799999994222222122 33444443221 134789999877777777666333344443
No 188
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=45.14 E-value=1.3e+02 Score=24.96 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--Hhh----CCCCCceEEeeccccccc-----CC-ccccccCCCCC
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKI----RPEVSPKILEYDMRFEQY-----GS-DFAFYDYNQPQ 161 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~----~~~~~~~LLEyD~RF~~~-----g~-~FvfYDyn~P~ 161 (258)
.+|...+...+... +..+|+=|||=|=+..+ .+. .+..+++-+|++...-.. +. +|+.=|..+..
T Consensus 67 p~~~~~l~~~l~~~---~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~ 143 (236)
T 2bm8_A 67 PDTQAVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLT 143 (236)
T ss_dssp HHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSG
T ss_pred HHHHHHHHHHHHhc---CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHH
Confidence 77777777666554 45799999998755543 232 456789999999765321 12 45555655432
Q ss_pred Cchhhhc-cCccEEEECCCCCCHHHHHHHHHHHHH-hcCCCCCcEEEe
Q 025067 162 DLPLELK-HAFSVVVVDPPYLSKECLEKVSETVSF-LARPGDSKLLLL 207 (258)
Q Consensus 162 ~lp~~lk-~~fD~Vv~DPPFlseec~eK~A~Tir~-L~k~~~~kiil~ 207 (258)
.++ .+. ++||+|++|-.-. + ...+-..+.. ++++ ++.+++.
T Consensus 144 ~l~-~~~~~~fD~I~~d~~~~--~-~~~~l~~~~r~~Lkp-GG~lv~~ 186 (236)
T 2bm8_A 144 TFE-HLREMAHPLIFIDNAHA--N-TFNIMKWAVDHLLEE-GDYFIIE 186 (236)
T ss_dssp GGG-GGSSSCSSEEEEESSCS--S-HHHHHHHHHHHTCCT-TCEEEEC
T ss_pred HHH-hhccCCCCEEEECCchH--h-HHHHHHHHHHhhCCC-CCEEEEE
Confidence 122 233 3699999988743 2 2333333443 6666 4566663
No 189
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=44.77 E-value=52 Score=29.34 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=51.7
Q ss_pred CCCeEEEEeC--------hhHHHHHHhhCC-CCCceEEeecccccccCC-cc-ccccCCCCCCchhhhccCccEEEECCC
Q 025067 111 SDSRVACIAC--------PTLYAYLKKIRP-EVSPKILEYDMRFEQYGS-DF-AFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 111 ~~~~Iaclst--------PSly~~lk~~~~-~~~~~LLEyD~RF~~~g~-~F-vfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
++.+|+=||| =+ ..+.+..+ +.+++-+|+... ... +| +.=|..++. +.++||+||+|++
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---v~~v~~~i~gD~~~~~-----~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---VSDADSTLIGDCATVH-----TANKWDLIISDMY 132 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---BCSSSEEEESCGGGCC-----CSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---CCCCEEEEECccccCC-----ccCcccEEEEcCC
Confidence 5779999999 55 22333334 467888888876 222 56 666664421 1267999999975
Q ss_pred CCC-----------HHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 180 YLS-----------KECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 180 Fls-----------eec~eK~A~Tir~L~k~~~~kiil 206 (258)
... .+.++.+...+..++|+ ++++++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp-GG~~v~ 169 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL-GGSIAV 169 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE-EEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC-CcEEEE
Confidence 321 23345555566666776 445655
No 190
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=44.74 E-value=12 Score=27.10 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=36.4
Q ss_pred CCCchhhh-ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 160 PQDLPLEL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 160 P~~lp~~l-k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+.-..+ ...+|+||+|--....+.++ +...+|... .+.+||+.|+......+.+.+..-..+|.++
T Consensus 35 ~~~a~~~~~~~~~dlii~d~~l~~~~g~~-~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~k 103 (134)
T 3f6c_A 35 GGSAVQRVETLKPDIVIIDVDIPGVNGIQ-VLETLRKRQ--YSGIIIIVSAKNDHFYGKHCADAGANGFVSK 103 (134)
T ss_dssp STTHHHHHHHHCCSEEEEETTCSSSCHHH-HHHHHHHTT--CCSEEEEEECC---CTHHHHHHTTCSEEEEG
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCChHH-HHHHHHhcC--CCCeEEEEeCCCChHHHHHHHHhCCCEEEeC
Confidence 33433333 35689999997665544332 333444322 2457888888777666666663334444443
No 191
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=44.53 E-value=67 Score=25.35 Aligned_cols=99 Identities=15% Similarity=0.031 Sum_probs=56.8
Q ss_pred HHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCC-CceEEeeccccccc-----CC-ccccccCCCCCCchhhhccCccEE
Q 025067 102 QEAVSLCSDSDSRVACIACPTLYAYLKKIRPEV-SPKILEYDMRFEQY-----GS-DFAFYDYNQPQDLPLELKHAFSVV 174 (258)
Q Consensus 102 ~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~-~~~LLEyD~RF~~~-----g~-~FvfYDyn~P~~lp~~lk~~fD~V 174 (258)
+.+..... ++.+|+=|||=+=.....- +. +++.+|++...-.. +. +|+.-|... +| .-.++||+|
T Consensus 28 ~~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~---~~-~~~~~fD~v 99 (211)
T 2gs9_A 28 RALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEA---LP-FPGESFDVV 99 (211)
T ss_dssp HHHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTS---CC-SCSSCEEEE
T ss_pred HHHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEccccc---CC-CCCCcEEEE
Confidence 33444433 6789999999775544332 34 78889988543221 11 444445432 22 113679999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 175 VVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 175 v~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
++.-.+-.-.-..++-..+..++++ ++++++++.
T Consensus 100 ~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~~ 133 (211)
T 2gs9_A 100 LLFTTLEFVEDVERVLLEARRVLRP-GGALVVGVL 133 (211)
T ss_dssp EEESCTTTCSCHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred EEcChhhhcCCHHHHHHHHHHHcCC-CCEEEEEec
Confidence 9876654322234555556666676 457777664
No 192
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=44.44 E-value=13 Score=34.89 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.5
Q ss_pred ccCccEEEECCCCCC
Q 025067 168 KHAFSVVVVDPPYLS 182 (258)
Q Consensus 168 k~~fD~Vv~DPPFls 182 (258)
.+.||+|++|| |++
T Consensus 123 ~~~fD~V~lDP-~g~ 136 (392)
T 3axs_A 123 GFGFDYVDLDP-FGT 136 (392)
T ss_dssp SSCEEEEEECC-SSC
T ss_pred CCCCcEEEECC-CcC
Confidence 45799999999 665
No 193
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=43.86 E-value=36 Score=35.59 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=49.0
Q ss_pred ccccccccChhHHHHHHHHHHhhcC---CCCCeEEE--EeChhHHHHHHhhCC---CCCceEEeecccccc---------
Q 025067 85 WRLSQFWYDAVTAETVAQEAVSLCS---DSDSRVAC--IACPTLYAYLKKIRP---EVSPKILEYDMRFEQ--------- 147 (258)
Q Consensus 85 wqlSQFWYsd~Ta~~La~~l~~~a~---~~~~~Iac--lstPSly~~lk~~~~---~~~~~LLEyD~RF~~--------- 147 (258)
...-||.=..+.+..+++.+..... .++.+|+= .||=++-..+.+..+ ..+++-.|+|.+-..
T Consensus 292 kk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~ 371 (878)
T 3s1s_A 292 GHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLL 371 (878)
T ss_dssp CCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTT
T ss_pred CcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3456665555556666666222111 13457763 344455555544332 346888999975321
Q ss_pred -----cCCcc---ccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 148 -----YGSDF---AFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 148 -----~g~~F---vfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
.|-.. ..=|+..|. ....++||+||+.|||+.
T Consensus 372 lN~LlhGi~~~~I~~dD~L~~~---~~~~~kFDVVIgNPPYg~ 411 (878)
T 3s1s_A 372 FPQLVSSNNAPTITGEDVCSLN---PEDFANVSVVVMNPPYVS 411 (878)
T ss_dssp STTTCBTTBCCEEECCCGGGCC---GGGGTTEEEEEECCBCCS
T ss_pred HhhhhcCCCcceEEecchhccc---ccccCCCCEEEECCCccc
Confidence 11111 111122211 122467999999999965
No 194
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=43.60 E-value=26 Score=26.08 Aligned_cols=48 Identities=31% Similarity=0.400 Sum_probs=30.5
Q ss_pred CccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 170 AFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 170 ~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
.||+||+|--....+.++ +...++.... ..+||+.|+......+.+.+
T Consensus 48 ~~dlvi~D~~l~~~~g~~-~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~ 95 (151)
T 3kcn_A 48 PFSVIMVDMRMPGMEGTE-VIQKARLISP--NSVYLMLTGNQDLTTAMEAV 95 (151)
T ss_dssp CCSEEEEESCCSSSCHHH-HHHHHHHHCS--SCEEEEEECGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHH-HHHHHHhcCC--CcEEEEEECCCCHHHHHHHH
Confidence 379999996555544433 3344554332 45788888877777776666
No 195
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=43.60 E-value=28 Score=30.16 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=50.8
Q ss_pred cccccccc-ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccccc--------CC-cccc
Q 025067 85 WRLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY--------GS-DFAF 154 (258)
Q Consensus 85 wqlSQFWY-sd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~--------g~-~Fvf 154 (258)
.++.|-|. +...++.|++.+.-. ++.+|+=|||=+=+-...-.....+++.+|+|.++... +. +++.
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~~~---~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~ 81 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIHPQ---KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQ 81 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHCCC---TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEE
T ss_pred CcCCcccccCHHHHHHHHHhcCCC---CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEE
Confidence 45677444 566777777766322 56788888876644333221123589999999876532 11 3333
Q ss_pred ccCCCCCCchhhh-ccCccEEEECCCCC
Q 025067 155 YDYNQPQDLPLEL-KHAFSVVVVDPPYL 181 (258)
Q Consensus 155 YDyn~P~~lp~~l-k~~fD~Vv~DPPFl 181 (258)
=|.-+ .+++... .+.|| ||..|||-
T Consensus 82 ~D~~~-~~~~~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 82 NDALQ-FDFSSVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp SCTTT-CCGGGSCCSSCEE-EEEECCHH
T ss_pred cchHh-CCHHHhccCCCeE-EEecCCcc
Confidence 34322 1122222 24577 99999994
No 196
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=43.50 E-value=14 Score=30.20 Aligned_cols=110 Identities=8% Similarity=-0.001 Sum_probs=65.7
Q ss_pred cccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCC------CCCceEEeeccccccc-----------
Q 025067 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRP------EVSPKILEYDMRFEQY----------- 148 (258)
Q Consensus 88 SQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~------~~~~~LLEyD~RF~~~----------- 148 (258)
.|.+....+...+.+.+..... ++.+|+=|||=+=+..+. +..+ ..+++.+|++......
T Consensus 62 ~~~~~~p~~~~~~~~~l~~~~~-~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 140 (227)
T 1r18_A 62 GVTISAPHMHAFALEYLRDHLK-PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 140 (227)
T ss_dssp TEEECCHHHHHHHHHHTTTTCC-TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHHHhhCC-CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc
Confidence 4666667777777776653333 678999999987555432 2111 2479999988543221
Q ss_pred ----CC-ccccccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 149 ----GS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 149 ----g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.. +|+.=|...+ ++. .++||+|+++.++-.- . ..+..++++ ++++++.++
T Consensus 141 ~~~~~~v~~~~~d~~~~--~~~--~~~fD~I~~~~~~~~~--~----~~~~~~Lkp-gG~lvi~~~ 195 (227)
T 1r18_A 141 MLDSGQLLIVEGDGRKG--YPP--NAPYNAIHVGAAAPDT--P----TELINQLAS-GGRLIVPVG 195 (227)
T ss_dssp HHHHTSEEEEESCGGGC--CGG--GCSEEEEEECSCBSSC--C----HHHHHTEEE-EEEEEEEES
T ss_pred ccCCCceEEEECCcccC--CCc--CCCccEEEECCchHHH--H----HHHHHHhcC-CCEEEEEEe
Confidence 11 3444444332 222 3679999999987542 1 334455565 457777776
No 197
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=43.37 E-value=11 Score=34.94 Aligned_cols=58 Identities=9% Similarity=-0.014 Sum_probs=30.9
Q ss_pred cccccccChhH--HHHHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hhCCCCCceEEeecccc
Q 025067 86 RLSQFWYDAVT--AETVAQEAVSLCSDSDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMRF 145 (258)
Q Consensus 86 qlSQFWYsd~T--a~~La~~l~~~a~~~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~RF 145 (258)
+-+.-||.... .+.+.-.++... .+.+|+=++|=|=...|. +..+..+++..|+|..-
T Consensus 22 ~~~~~F~np~~~~nr~l~~~~l~~~--~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~a 83 (378)
T 2dul_A 22 YDSPVFYNPRMALNRDIVVVLLNIL--NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDA 83 (378)
T ss_dssp ---CCCCCGGGHHHHHHHHHHHHHH--CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHH
T ss_pred CCCCceeCCchHHHHHHHHHHHHHc--CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHH
Confidence 33566675433 233333333332 456888777766555443 22345579999999654
No 198
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=42.79 E-value=12 Score=27.26 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=31.3
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
..+|+||+|--....+.++ +...++... ...+||+.|+....+.+.+.+
T Consensus 50 ~~~dlvi~d~~l~~~~g~~-~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~ 98 (137)
T 3hdg_A 50 HAPDVIITDIRMPKLGGLE-MLDRIKAGG--AKPYVIVISAFSEMKYFIKAI 98 (137)
T ss_dssp HCCSEEEECSSCSSSCHHH-HHHHHHHTT--CCCEEEECCCCCCHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCHHH-HHHHHHhcC--CCCcEEEEecCcChHHHHHHH
Confidence 5689999996555444333 333444332 245799999877777776666
No 199
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=42.75 E-value=26 Score=28.50 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=50.1
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccc--------ccC--C--ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
++.+|+-+||=+=... +.+. ..+++.+|++...- .++ . +|+.=|..++. ++ .+.||+|++
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~---~~~~D~v~~ 164 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VP---EGIFHAAFV 164 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CC---TTCBSEEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cC---CCcccEEEE
Confidence 5679999988653322 3332 46899999885432 122 1 34444444321 01 257999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 177 DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
|||-. +. +-..+..++++ ++++++.++
T Consensus 165 ~~~~~----~~-~l~~~~~~L~~-gG~l~~~~~ 191 (248)
T 2yvl_A 165 DVREP----WH-YLEKVHKSLME-GAPVGFLLP 191 (248)
T ss_dssp CSSCG----GG-GHHHHHHHBCT-TCEEEEEES
T ss_pred CCcCH----HH-HHHHHHHHcCC-CCEEEEEeC
Confidence 99932 12 23334455565 457877776
No 200
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=42.60 E-value=9.7 Score=36.84 Aligned_cols=95 Identities=17% Similarity=-0.005 Sum_probs=46.6
Q ss_pred ccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhH------HHHHHhhCC--------------CCCceEEeeccc
Q 025067 85 WRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTL------YAYLKKIRP--------------EVSPKILEYDMR 144 (258)
Q Consensus 85 wqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSl------y~~lk~~~~--------------~~~~~LLEyD~R 144 (258)
...-||+-...-++.|++.+.-. .+.+|+=.+|=|= +..+++... ..+++-.|+|.+
T Consensus 146 ~~~G~fyTP~~iv~~mv~~l~p~---~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~ 222 (541)
T 2ar0_A 146 SGAGQYFTPRPLIKTIIHLLKPQ---PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 222 (541)
T ss_dssp ----CCCCCHHHHHHHHHHHCCC---TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred ccCCeeeCCHHHHHHHHHHhccC---CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence 45677765555556666554321 3567776666552 233332211 236888899864
Q ss_pred ccc--------cCCc------cccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 145 FEQ--------YGSD------FAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 145 F~~--------~g~~------FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
-.. .|-. ..++--+ -+..+..-.++||+||++|||+..
T Consensus 223 ~~~lA~~nl~l~gi~~~~~~~~~I~~gD-tL~~~~~~~~~fD~Vv~NPPf~~~ 274 (541)
T 2ar0_A 223 TRRLALMNCLLHDIEGNLDHGGAIRLGN-TLGSDGENLPKAHIVATNPPFGSA 274 (541)
T ss_dssp HHHHHHHHHHTTTCCCBGGGTBSEEESC-TTSHHHHTSCCEEEEEECCCCTTC
T ss_pred HHHHHHHHHHHhCCCccccccCCeEeCC-CcccccccccCCeEEEECCCcccc
Confidence 321 1211 1111111 111121123579999999999864
No 201
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=41.57 E-value=30 Score=24.77 Aligned_cols=61 Identities=8% Similarity=0.062 Sum_probs=31.8
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
...+|+||+|--....+.++ +...+|......+.+||+.|+...... .+.+..-..+|.++
T Consensus 45 ~~~~dlvi~d~~l~~~~g~~-~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~K 105 (133)
T 3nhm_A 45 AHPPDVLISDVNMDGMDGYA-LCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVK 105 (133)
T ss_dssp HSCCSEEEECSSCSSSCHHH-HHHHHHHSTTTTTCCEEEEESCCC------TTSCCCSEEEES
T ss_pred cCCCCEEEEeCCCCCCCHHH-HHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEec
Confidence 35699999997665544333 333344432112457899998665555 55553334455443
No 202
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=41.51 E-value=33 Score=24.73 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=35.5
Q ss_pred cCccEEEECCCCC-CHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYL-SKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFl-seec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--.. ..+.+ .+...++.. + ..+||+.|+......+.+.+.....+|.++
T Consensus 53 ~~~dlii~d~~~~~~~~g~-~~~~~l~~~--~-~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 111 (140)
T 3cg0_A 53 LRPDIALVDIMLCGALDGV-ETAARLAAG--C-NLPIIFITSSQDVETFQRAKRVNPFGYLAK 111 (140)
T ss_dssp HCCSEEEEESSCCSSSCHH-HHHHHHHHH--S-CCCEEEEECCCCHHHHHHHHTTCCSEEEEE
T ss_pred CCCCEEEEecCCCCCCCHH-HHHHHHHhC--C-CCCEEEEecCCCHHHHHHHHhcCCCEEEeC
Confidence 5689999995442 22222 234445544 2 458999998777777777774444455443
No 203
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=41.06 E-value=17 Score=26.77 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=32.7
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcC---CCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLAR---PGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k---~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|--....+.+ ..++.|.+ ....+||+.|+......+.+.+.....+|.+
T Consensus 51 ~~~dlii~d~~l~~~~g~----~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~ 110 (147)
T 2zay_A 51 THPHLIITEANMPKISGM----DLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIA 110 (147)
T ss_dssp HCCSEEEEESCCSSSCHH----HHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEEcCCCCCCCHH----HHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEe
Confidence 568999999655544332 22334433 1245789888876666666665333334433
No 204
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=40.57 E-value=26 Score=25.32 Aligned_cols=58 Identities=10% Similarity=0.160 Sum_probs=33.0
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcC---CCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLAR---PGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k---~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--....+.+ ..++.|.+ ....+||+.|+......+.+.+.....+|.++
T Consensus 53 ~~~dlii~d~~l~~~~g~----~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~k 113 (143)
T 3cnb_A 53 VKPDVVMLDLMMVGMDGF----SICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGK 113 (143)
T ss_dssp TCCSEEEEETTCTTSCHH----HHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred cCCCEEEEecccCCCcHH----HHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeC
Confidence 568999999655443322 22334433 12457888888766666666664334444443
No 205
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=40.39 E-value=31 Score=31.35 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=49.2
Q ss_pred CeEEEEeChhHHH--HHHhhCCCCCceEEeecccccccCC-----------ccccccCCCCCCchhhh-ccCccEEEECC
Q 025067 113 SRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYGS-----------DFAFYDYNQPQDLPLEL-KHAFSVVVVDP 178 (258)
Q Consensus 113 ~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF~~~g~-----------~FvfYDyn~P~~lp~~l-k~~fD~Vv~DP 178 (258)
.+|+.|||=+-.. .|.+..|+.++..+|+|...-.... +++.=|.. ++...+ .++||+||+|.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~---~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDAR---MVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHH---HHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHH---HHHhhccCCCCCEEEECC
Confidence 3999999875443 3444467789999999976433211 12211210 011122 36799999996
Q ss_pred CCCC--HHHH--HHHHHHHHHhcCCCCCcEEEech
Q 025067 179 PYLS--KECL--EKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 179 PFls--eec~--eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+... ..-+ ..+-+.++.++++ ++.+++.++
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~Lkp-gGvlv~~~~ 201 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAP-GGLYVANCG 201 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred CCccccchhhhHHHHHHHHHHhcCC-CcEEEEEec
Confidence 4331 0000 2233344555665 345555444
No 206
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=40.32 E-value=37 Score=30.29 Aligned_cols=70 Identities=9% Similarity=0.073 Sum_probs=44.0
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecc--------cccccCC--ccccccCCCCCCchhhhc----cCccEE
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDM--------RFEQYGS--DFAFYDYNQPQDLPLELK----HAFSVV 174 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~--------RF~~~g~--~FvfYDyn~P~~lp~~lk----~~fD~V 174 (258)
++.+|+=++|=+=... |.+..|+.+++-+|.|. |.+.+|. .|+.=|+. .++..+. ++||.|
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~---~l~~~l~~~g~~~~D~V 102 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR---EADFLLKTLGIEKVDGI 102 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGG---GHHHHHHHTTCSCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHH---HHHHHHHhcCCCCCCEE
Confidence 4678888777654433 33445566899999994 4444543 34444443 3444342 579999
Q ss_pred EECCCCCCH
Q 025067 175 VVDPPYLSK 183 (258)
Q Consensus 175 v~DPPFlse 183 (258)
|+|||+.+.
T Consensus 103 l~D~gvSs~ 111 (301)
T 1m6y_A 103 LMDLGVSTY 111 (301)
T ss_dssp EEECSCCHH
T ss_pred EEcCccchh
Confidence 999998653
No 207
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=40.24 E-value=27 Score=28.06 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeChhHH--HHHHhhCCCCCceEEeecccc--------cccC-C-ccccccCCCCCCc
Q 025067 96 TAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRF--------EQYG-S-DFAFYDYNQPQDL 163 (258)
Q Consensus 96 Ta~~La~~l~~~a~~~~~~IaclstPSly--~~lk~~~~~~~~~LLEyD~RF--------~~~g-~-~FvfYDyn~P~~l 163 (258)
-...+.+.+..... +..+|+=|||=+=. ..+.+. +.+++.+|++... ...+ . .|+.-|... +
T Consensus 23 ~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~ 96 (246)
T 1y8c_A 23 WSDFIIEKCVENNL-VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN---L 96 (246)
T ss_dssp HHHHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG---C
T ss_pred HHHHHHHHHHHhCC-CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc---C
Confidence 34555555544322 56799999885533 334432 3578888887533 2222 1 344444322 2
Q ss_pred hhhhccCccEEEECC-C--CC-CHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 164 PLELKHAFSVVVVDP-P--YL-SKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 164 p~~lk~~fD~Vv~DP-P--Fl-seec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
| +.++||+||+.. . ++ +.+-..++-..++.++++ ++.+++.+.
T Consensus 97 ~--~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~ 143 (246)
T 1y8c_A 97 N--INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE-GGVFIFDIN 143 (246)
T ss_dssp C--CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEE-EEEEEEEEE
T ss_pred C--ccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCC-CcEEEEEec
Confidence 2 236899999988 4 34 323345555556666666 456766554
No 208
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=40.15 E-value=29 Score=27.24 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=35.4
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
...+|+||+|--.-..+-+ +...++... ...+||+.|+....+.+.+.+..-..+|.+
T Consensus 50 ~~~~dlvl~D~~mp~~~g~--l~~~~~~~~--~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~ 107 (196)
T 1qo0_D 50 DVPVDVVFTSIFQNRHHDE--IAALLAAGT--PRTTLVALVEYESPAVLSQIIELECHGVIT 107 (196)
T ss_dssp SSCCSEEEEECCSSTHHHH--HHHHHHHSC--TTCEEEEEECCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCCCEEEEeCCCCccchH--HHHHHhccC--CCCCEEEEEcCCChHHHHHHHHcCCCeeEe
Confidence 3568999999766554322 333333321 245899999987777777776333344443
No 209
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=40.14 E-value=33 Score=28.10 Aligned_cols=94 Identities=15% Similarity=0.055 Sum_probs=51.5
Q ss_pred CCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccc--------cccCC--ccccccCCCCCCchhhh-ccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRF--------EQYGS--DFAFYDYNQPQDLPLEL-KHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF--------~~~g~--~FvfYDyn~P~~lp~~l-k~~fD~Vv~DP 178 (258)
++.+|+=|||=+=+..+.-. ....+++.+|++... ...+. +|+.=|..+ +...+ .++||+||+|
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~---~~~~~~~~~fD~V~~d- 135 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED---VAPTLPDGHFDGILYD- 135 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH---HGGGSCTTCEEEEEEC-
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHH---hhcccCCCceEEEEEC-
Confidence 56799999998766554322 222378899998654 22222 233222211 11112 3689999995
Q ss_pred CCC------CHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 179 PYL------SKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 179 PFl------seec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.|. ...-.+.+-..++.++|+ +++++++..
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~Lkp-gG~l~~~~~ 171 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKP-GGVLTYCNL 171 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEE-EEEEEECCH
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCC-CeEEEEEec
Confidence 222 222233444556666776 456776654
No 210
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=40.11 E-value=13 Score=34.00 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=15.1
Q ss_pred CccEEEEC-CCCCCHHHHHHHHHHHHHhcCC
Q 025067 170 AFSVVVVD-PPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 170 ~fD~Vv~D-PPFlseec~eK~A~Tir~L~k~ 199 (258)
.||+||+| || +.+|+++|.-|
T Consensus 155 ~yD~VIiDtpP---------tg~tLrlL~lP 176 (348)
T 3io3_A 155 SYKTIIFDTAP---------TGHTLRFLQLP 176 (348)
T ss_dssp -CCEEEEECSS---------HHHHHHHTC--
T ss_pred CCCEEEEcCCC---------chHHHHHHhhH
Confidence 79999999 55 46888888876
No 211
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=40.08 E-value=21 Score=25.81 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=35.1
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 171 FSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 171 fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+|+||+|--....+.++ +...++... ....+||+.|+......+.+.+..-..+|.++
T Consensus 53 ~dlvi~D~~l~~~~g~~-~~~~l~~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 110 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLD-LIRTIRASE-RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLK 110 (136)
T ss_dssp EEEEEECSCCSSSCHHH-HHHHHHTST-TTTCEEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred CcEEEEeccCCCCCHHH-HHHHHHhcC-CCCCCEEEEeCCCChHHHHHHHhCCcceEEeC
Confidence 89999997655544433 233333321 12458999999877777777763334455443
No 212
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=39.45 E-value=27 Score=25.93 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=20.7
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
..+|+||+|--....+.+ .+...++.... ..+||+.|+....+.+.+.+
T Consensus 49 ~~~dlvi~d~~l~~~~g~-~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~ 97 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAEAI-DGLVRLKRFDP--SNAVALISGETDHELIRAAL 97 (154)
T ss_dssp CCCSEEEECC------CH-HHHHHHHHHCT--TSEEEEC-----CHHHHHHH
T ss_pred CCCCEEEEeCCCCCCchH-HHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHH
Confidence 457888888543332222 23333443322 34778877766555555555
No 213
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=38.86 E-value=87 Score=29.06 Aligned_cols=106 Identities=14% Similarity=0.205 Sum_probs=62.6
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEEe--ChhHHHHHH----hh-CCCCCceEEe---eccc------------
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIA--CPTLYAYLK----KI-RPEVSPKILE---YDMR------------ 144 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~Iacls--tPSly~~lk----~~-~~~~~~~LLE---yD~R------------ 144 (258)
-+.|-|++.+...|-+.+.+..+ ..-+++. ++|-..++. .. .|+..+++.+ |+.-
T Consensus 65 ~~gy~y~~~~~~~Le~~lA~l~g---~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 141 (427)
T 3i16_A 65 SSGYGYGDIGRDSLDAVYARVFN---TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNM 141 (427)
T ss_dssp CCTTCTTCHHHHHHHHHHHHHHT---CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhC---CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchH
Confidence 46788999998888888887754 2233332 555454443 22 4666666665 6632
Q ss_pred --ccccCCccccccCC-----CCCCchhhhc--cCccEEEECC----CCC---CHHHHHHHHHHHHH
Q 025067 145 --FEQYGSDFAFYDYN-----QPQDLPLELK--HAFSVVVVDP----PYL---SKECLEKVSETVSF 195 (258)
Q Consensus 145 --F~~~g~~FvfYDyn-----~P~~lp~~lk--~~fD~Vv~DP----PFl---seec~eK~A~Tir~ 195 (258)
+..+|-+++++|.. .++.|.+.++ ....+|++.+ |+. +..-++++++.++.
T Consensus 142 ~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~ 208 (427)
T 3i16_A 142 GSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKN 208 (427)
T ss_dssp CCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHH
Confidence 22345467777763 3333444455 5667899988 654 44445666555554
No 214
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=38.73 E-value=1.2e+02 Score=24.13 Aligned_cols=100 Identities=12% Similarity=0.033 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccccc--------C-------C-ccccc
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY--------G-------S-DFAFY 155 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~--------g-------~-~FvfY 155 (258)
..-.+.|.+.+... +..+|+=|||=+=+.. +.+..+..+++.+|++...-.. + . +|+.-
T Consensus 15 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 91 (219)
T 3jwg_A 15 QQRLGTVVAVLKSV---NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91 (219)
T ss_dssp HHHHHHHHHHHHHT---TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHhhc---CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence 34445555555443 5689999998775554 3333455689999998643221 1 1 34444
Q ss_pred cCCCCCCchhhhccCccEEEECCCC--CCHHHHHHHHHHHHHhcCCC
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPY--LSKECLEKVSETVSFLARPG 200 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPF--lseec~eK~A~Tir~L~k~~ 200 (258)
|... ++ .-.++||+|++--.+ +..+-+.++-..+..+++++
T Consensus 92 d~~~---~~-~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (219)
T 3jwg_A 92 SLVY---RD-KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQ 134 (219)
T ss_dssp CSSS---CC-GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred cccc---cc-cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence 4422 11 123689999876554 23333456666666777773
No 215
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=38.38 E-value=19 Score=31.34 Aligned_cols=88 Identities=18% Similarity=0.117 Sum_probs=51.2
Q ss_pred ccccccccc-ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHH--HHHHhhCCCCCceEEeecccccc--------cC--C
Q 025067 84 DWRLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQ--------YG--S 150 (258)
Q Consensus 84 DwqlSQFWY-sd~Ta~~La~~l~~~a~~~~~~IaclstPSly--~~lk~~~~~~~~~LLEyD~RF~~--------~g--~ 150 (258)
+..+.|.|. ++..++.|++.+.-. ++.+|+=|||=+=+ ..|.+. ..+++-+|+|.+.-. .| +
T Consensus 3 ~k~~gq~fl~d~~i~~~i~~~~~~~---~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 77 (285)
T 1zq9_A 3 NTGIGQHILKNPLIINSIIDKAALR---PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVAS 77 (285)
T ss_dssp -----CCEECCHHHHHHHHHHTCCC---TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGG
T ss_pred CCCCCcCccCCHHHHHHHHHhcCCC---CCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 345677665 777777777765322 56789888876533 334333 347999999976532 11 1
Q ss_pred --ccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 151 --DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 151 --~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
+|+.=|..+. .+ ..||+||+++||--
T Consensus 78 ~v~~~~~D~~~~-~~-----~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 78 KLQVLVGDVLKT-DL-----PFFDTCVANLPYQI 105 (285)
T ss_dssp GEEEEESCTTTS-CC-----CCCSEEEEECCGGG
T ss_pred ceEEEEcceecc-cc-----hhhcEEEEecCccc
Confidence 3444444321 12 26899999999964
No 216
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=38.20 E-value=1.2e+02 Score=24.18 Aligned_cols=109 Identities=11% Similarity=-0.012 Sum_probs=63.2
Q ss_pred ccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH--HhhCCCCCceEEeecccccc--------cC-------C-cc
Q 025067 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL--KKIRPEVSPKILEYDMRFEQ--------YG-------S-DF 152 (258)
Q Consensus 91 WYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l--k~~~~~~~~~LLEyD~RF~~--------~g-------~-~F 152 (258)
-+...-.+.|.+.+... ++.+|+=|||=+=...+ .+..+..+++.+|++...-. .+ . +|
T Consensus 12 ~~~~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~ 88 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQS---NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88 (217)
T ss_dssp CHHHHHHHHHHHHHHHT---TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEE
T ss_pred CHHHHHHHHHHHHHHhc---CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEE
Confidence 34455566677766554 56899999887755543 33345568999999854321 11 1 23
Q ss_pred ccccCCCCCCchhhhccCccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFl--seec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+.-|...+ + .-.++||+|++--.+- ..+-+.++-..+..+++++ + ++++|
T Consensus 89 ~~~d~~~~---~-~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G-~li~~ 140 (217)
T 3jwh_A 89 IQGALTYQ---D-KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPK-I-VIVTT 140 (217)
T ss_dssp EECCTTSC---C-GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS-E-EEEEE
T ss_pred EeCCcccc---c-ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCC-E-EEEEc
Confidence 33343211 1 1236899999876544 4434456666666677773 3 44443
No 217
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=38.00 E-value=30 Score=25.06 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=35.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhc--CCCCCcEEEechHHHHHHHHHHhCCc-ccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLA--RPGDSKLLLLTGEVQKERAAELLGLR-PCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~--k~~~~kiil~Tg~~me~~i~kll~~~-~~~F~P 229 (258)
..+|+||+|--....+.++ +...+|... .....+||+.|+......+.+.+..- ..+|.+
T Consensus 59 ~~~dlvi~D~~l~~~~g~~-~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~ 121 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGWE-LIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVS 121 (146)
T ss_dssp CCCSEEEEESSCSSSCHHH-HHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEEC
T ss_pred CCCCEEEEcCCCCCCCHHH-HHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeee
Confidence 5689999996554444433 344455532 11245789999877777777666333 444443
No 218
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=37.81 E-value=1.2e+02 Score=22.46 Aligned_cols=84 Identities=12% Similarity=-0.018 Sum_probs=49.0
Q ss_pred CCeEEEEeChhHHHHHHhh--CCCCCceEEeecccc-c---ccCCccccccCCCCCCchhhhccCccEEEECCCCCCHHH
Q 025067 112 DSRVACIACPTLYAYLKKI--RPEVSPKILEYDMRF-E---QYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKEC 185 (258)
Q Consensus 112 ~~~IaclstPSly~~lk~~--~~~~~~~LLEyD~RF-~---~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec 185 (258)
..+|+++|+=.+=..+-+. ..+.+++++|.|..- . ..|-.++.-|...|..+...--..+|+||+=.| +.+-
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~--~~~~ 83 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS--DDEF 83 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS--CHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC--CHHH
Confidence 3578888885543333221 125688998887532 2 223355666776654333221245888777666 5554
Q ss_pred HHHHHHHHHHhc
Q 025067 186 LEKVSETVSFLA 197 (258)
Q Consensus 186 ~eK~A~Tir~L~ 197 (258)
...++.++|.+.
T Consensus 84 n~~~~~~a~~~~ 95 (141)
T 3llv_A 84 NLKILKALRSVS 95 (141)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 566777788776
No 219
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=37.72 E-value=14 Score=35.77 Aligned_cols=15 Identities=20% Similarity=0.631 Sum_probs=13.0
Q ss_pred cCccEEEECCCCCCH
Q 025067 169 HAFSVVVVDPPYLSK 183 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (258)
.+||+||+.|||+..
T Consensus 301 ~~fD~Il~NPPf~~~ 315 (530)
T 3ufb_A 301 DRVDVILTNPPFGGE 315 (530)
T ss_dssp GCBSEEEECCCSSCB
T ss_pred ccceEEEecCCCCcc
Confidence 579999999999854
No 220
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=37.58 E-value=41 Score=24.12 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=31.7
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|-=.-..+-++ +...+|........+||+.|+......+.+.+..-..+|.+
T Consensus 45 ~~~dlvllD~~~p~~~g~~-~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~ 104 (122)
T 3gl9_A 45 FTPDLIVLXIMMPVMDGFT-VLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMR 104 (122)
T ss_dssp BCCSEEEECSCCSSSCHHH-HHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEeccCCCCcHHH-HHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhcc
Confidence 5689999994332222222 22222222111245799999877666666666333344443
No 221
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=37.46 E-value=1e+02 Score=24.60 Aligned_cols=104 Identities=20% Similarity=0.122 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeChhHHH--HHHhhCCCCCceEEeecccccc-----cCC-ccccccCCCCCCchhhh
Q 025067 96 TAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQ-----YGS-DFAFYDYNQPQDLPLEL 167 (258)
Q Consensus 96 Ta~~La~~l~~~a~~~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF~~-----~g~-~FvfYDyn~P~~lp~~l 167 (258)
.+..+++.+..... ++.+|+=|||=+=.. .|.+..+ +++.+|++...-. ++. +|+.-|.... + +
T Consensus 26 ~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~---~--~ 97 (239)
T 3bxo_A 26 EASDIADLVRSRTP-EASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDF---R--L 97 (239)
T ss_dssp HHHHHHHHHHHHCT-TCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTC---C--C
T ss_pred HHHHHHHHHHHhcC-CCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHc---c--c
Confidence 44566666666544 678999999865332 3333322 7888998754422 121 4555555432 2 1
Q ss_pred ccCccEEEECC-C--CC-CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 168 KHAFSVVVVDP-P--YL-SKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 168 k~~fD~Vv~DP-P--Fl-seec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.++||+|++-- . ++ +.+-+.++-..+..++++ ++.+++.+
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~ 141 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEP-GGVVVVEP 141 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEE-EEEEEECC
T ss_pred CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCC-CeEEEEEe
Confidence 46899999522 2 22 333345566666667776 45666654
No 222
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=37.45 E-value=31 Score=24.90 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=31.4
Q ss_pred CccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCccccee
Q 025067 170 AFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFR 228 (258)
Q Consensus 170 ~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~ 228 (258)
.+|+||+|-=.-..+-++ +.+.+|........+||+.|+......+.+.+..-..+|.
T Consensus 51 ~~dlvi~D~~~p~~~g~~-~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l 108 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGLD-LVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYI 108 (129)
T ss_dssp TCCEEEECSCCSSSCHHH-HHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEeCCCCCCCHHH-HHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEE
Confidence 588999984333322222 2333333222124579999998777777666633333443
No 223
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=37.40 E-value=8.6 Score=32.40 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=52.0
Q ss_pred ccccc-cccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHH--HHHHhhCCCCCceEEeecccccccCC---------cc
Q 025067 85 WRLSQ-FWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRFEQYGS---------DF 152 (258)
Q Consensus 85 wqlSQ-FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly--~~lk~~~~~~~~~LLEyD~RF~~~g~---------~F 152 (258)
..+.| |.-+...++.+++.+.-. ++.+|+=|||=+=. ..|.+. ..+++-+|+|.+...... +|
T Consensus 5 k~~gq~fl~~~~~~~~i~~~~~~~---~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~~~~~v~~ 79 (245)
T 1yub_A 5 IKYSQNFLTSEKVLNQIIKQLNLK---ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTL 79 (245)
T ss_dssp CCSCCCBCCCTTTHHHHHHHCCCC---SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEE
T ss_pred cccCCCCCCCHHHHHHHHHhcCCC---CCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhccCCceEE
Confidence 45778 555666777776655311 45678877765422 223332 257999999987654321 23
Q ss_pred ccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
+.=|+.+ ++-.-.++| +||++|||.-.
T Consensus 80 ~~~D~~~---~~~~~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 80 IHQDILQ---FQFPNKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp CCSCCTT---TTCCCSSEE-EEEEECCSSSC
T ss_pred EECChhh---cCcccCCCc-EEEEeCCcccc
Confidence 3334332 210002468 89999999853
No 224
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=37.08 E-value=67 Score=26.35 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=54.8
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc----cc----cCC-ccccccCCCCCCchhhhccCccEEEECCC
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF----EQ----YGS-DFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF----~~----~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
++.+|+=|||=+=+.. |.+..+..+++-+|++.+. .. ... .++.=|...|... ..+.++||+|++|-+
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~-~~~~~~fD~V~~~~~ 135 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKY-SGIVEKVDLIYQDIA 135 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGT-TTTCCCEEEEEECCC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhh-cccccceeEEEEecc
Confidence 5779999999875543 3344444579999999742 11 111 3444465554221 112478999999954
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 180 YLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 180 Flseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.-.. ...+...+..++|+ ++++++++
T Consensus 136 ~~~~--~~~~l~~~~r~Lkp-gG~l~i~~ 161 (210)
T 1nt2_A 136 QKNQ--IEILKANAEFFLKE-KGEVVIMV 161 (210)
T ss_dssp STTH--HHHHHHHHHHHEEE-EEEEEEEE
T ss_pred ChhH--HHHHHHHHHHHhCC-CCEEEEEE
Confidence 4322 23334455666676 45777664
No 225
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=36.33 E-value=23 Score=25.67 Aligned_cols=58 Identities=7% Similarity=0.072 Sum_probs=33.9
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCC---CCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARP---GDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~---~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--....+-+ ..++.|.+. ...+||+.|+....+.+.+.+..-..+|.++
T Consensus 61 ~~~dlvi~D~~l~~~~g~----~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~k 121 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGR----EVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVK 121 (149)
T ss_dssp CCCSEEEECSCCSSSCHH----HHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEEC
T ss_pred CCCcEEEEECCCCCCCHH----HHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeC
Confidence 568999999654433222 233444432 2357888888777676676664444455443
No 226
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=36.29 E-value=86 Score=28.75 Aligned_cols=108 Identities=9% Similarity=0.094 Sum_probs=61.2
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHH----Hhh-CCCCCceEEe---ecccc-------------
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYL----KKI-RPEVSPKILE---YDMRF------------- 145 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~l----k~~-~~~~~~~LLE---yD~RF------------- 145 (258)
-+-|-|++.+.+.|.+.+.+..+ ....+++..+.|-..++ ... .|+..+++.+ |+.-.
T Consensus 51 ~~~~~y~~~~~~~Le~~lA~l~g-~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l 129 (409)
T 3jzl_A 51 STGYGYDDEGRDTLERVYATVFK-TEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSL 129 (409)
T ss_dssp CCTTCTTCHHHHHHHHHHHHHHT-CSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCT
T ss_pred CcCCCCChhHHHHHHHHHHHHhC-CCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHH
Confidence 56789999998889888887754 22222211144444443 322 4555666655 55432
Q ss_pred cccCCccccccCC-----CCCCchhhhccCccEEEECC----CC---CCHHHHHHHHHHHHH
Q 025067 146 EQYGSDFAFYDYN-----QPQDLPLELKHAFSVVVVDP----PY---LSKECLEKVSETVSF 195 (258)
Q Consensus 146 ~~~g~~FvfYDyn-----~P~~lp~~lk~~fD~Vv~DP----PF---lseec~eK~A~Tir~ 195 (258)
..+|-++++.|.. .++.|.+.++....+|++.. |+ +...-++++++.++.
T Consensus 130 ~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~ 191 (409)
T 3jzl_A 130 KDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKN 191 (409)
T ss_dssp GGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHh
Confidence 2345467777762 33344444555567899888 54 344445555554444
No 227
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=36.16 E-value=22 Score=31.15 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=54.0
Q ss_pred CCCeEEEEeChhHHHHH--HhhCC-CCCceEEeeccc--------ccccC--C-ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLYAYL--KKIRP-EVSPKILEYDMR--------FEQYG--S-DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~l--k~~~~-~~~~~LLEyD~R--------F~~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
++.+|+=|||=+=+..+ .+..+ ..+++-+|++.. +...| . +|+.-|+.+. ++ ..++||+||+
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~--~~--~~~~fD~Iv~ 150 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG--VP--EFSPYDVIFV 150 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC--CG--GGCCEEEEEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc--cc--cCCCeEEEEE
Confidence 57899999987655443 23233 356999999853 32222 1 4555555432 11 1367999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechH
Q 025067 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLTGE 210 (258)
Q Consensus 177 DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~ 210 (258)
++|+-.-. ..+..++++ ++++++..+.
T Consensus 151 ~~~~~~~~------~~~~~~Lkp-gG~lvi~~~~ 177 (317)
T 1dl5_A 151 TVGVDEVP------ETWFTQLKE-GGRVIVPINL 177 (317)
T ss_dssp CSBBSCCC------HHHHHHEEE-EEEEEEEBCB
T ss_pred cCCHHHHH------HHHHHhcCC-CcEEEEEECC
Confidence 99986531 344556676 4577776553
No 228
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=36.06 E-value=16 Score=31.03 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCCeEEEEeChhHHHH--HHhh-CCCCCceEEeeccccc--------ccC--C--ccccccCCCCCCchhhhccCccEEE
Q 025067 111 SDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRFE--------QYG--S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~-~~~~~~~LLEyD~RF~--------~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (258)
++.+|+-+||=+=... +.+. .|..+++.+|++...- .+| . .|+.-|..+. ++ .++||+|+
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~---~~~~D~V~ 186 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FD---EKDVDALF 186 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CS---CCSEEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--cc---CCccCEEE
Confidence 5679999988664333 3333 4567899999875332 222 1 2333333222 21 25799999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 176 ~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+|||... .-+.. +..++++ ++.+++.++
T Consensus 187 ~~~~~~~----~~l~~-~~~~L~p-gG~l~~~~~ 214 (277)
T 1o54_A 187 LDVPDPW----NYIDK-CWEALKG-GGRFATVCP 214 (277)
T ss_dssp ECCSCGG----GTHHH-HHHHEEE-EEEEEEEES
T ss_pred ECCcCHH----HHHHH-HHHHcCC-CCEEEEEeC
Confidence 9999652 22233 3344555 456777665
No 229
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=35.94 E-value=39 Score=23.95 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=32.4
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcC---CCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLAR---PGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k---~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|--....+-+ +.++.|.+ ....+||+.|+......+.+.+..-..+|.+
T Consensus 48 ~~~dlvi~D~~l~~~~g~----~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 107 (128)
T 1jbe_A 48 GGYGFVISDWNMPNMDGL----ELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 107 (128)
T ss_dssp CCCCEEEEESCCSSSCHH----HHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEeCCCCCCCHH----HHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceee
Confidence 568999999544332222 22334433 1245789888877666666666333344443
No 230
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=35.66 E-value=23 Score=25.98 Aligned_cols=57 Identities=4% Similarity=0.062 Sum_probs=29.9
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|--....+.++ +...++ +....+||+.|+....+.+.+.+..-..+|.+
T Consensus 47 ~~~dlvllD~~l~~~~g~~-l~~~l~---~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 103 (136)
T 2qzj_A 47 NKYDLIFLEIILSDGDGWT-LCKKIR---NVTTCPIVYMTYINEDQSILNALNSGGDDYLI 103 (136)
T ss_dssp CCCSEEEEESEETTEEHHH-HHHHHH---TTCCCCEEEEESCCCHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEeCCCCCCCHHH-HHHHHc---cCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEE
Confidence 4578888885443332222 222333 22134688887766666666665333344443
No 231
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=35.23 E-value=84 Score=26.60 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=59.7
Q ss_pred HHHHHHhhcCCCCCeEEEEeChhHHHHHH--hh-CCCCCceEEeecccccc------------cCC-ccccccCCCCCCc
Q 025067 100 VAQEAVSLCSDSDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDMRFEQ------------YGS-DFAFYDYNQPQDL 163 (258)
Q Consensus 100 La~~l~~~a~~~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~RF~~------------~g~-~FvfYDyn~P~~l 163 (258)
+.+.+......++.+|+=|||=+=...+. +. .+..+++-+|++..+-. .+. +|+.-|..+.. +
T Consensus 25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~ 103 (299)
T 3g5t_A 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK-F 103 (299)
T ss_dssp HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG-G
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC-c
Confidence 33444443322678999999987665543 22 36778999999864421 112 56666665411 1
Q ss_pred hh--hh-ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 164 PL--EL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 164 p~--~l-k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil 206 (258)
+. .+ .++||+|++--.+-..+ ..++-..++.++++ ++.|++
T Consensus 104 ~~~~~~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~Lkp-gG~l~i 147 (299)
T 3g5t_A 104 LGADSVDKQKIDMITAVECAHWFD-FEKFQRSAYANLRK-DGTIAI 147 (299)
T ss_dssp GCTTTTTSSCEEEEEEESCGGGSC-HHHHHHHHHHHEEE-EEEEEE
T ss_pred cccccccCCCeeEEeHhhHHHHhC-HHHHHHHHHHhcCC-CcEEEE
Confidence 11 11 37899999876543333 35555556666666 445554
No 232
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=35.06 E-value=31 Score=25.29 Aligned_cols=52 Identities=12% Similarity=0.053 Sum_probs=28.3
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
.+.+|+||+|--.-..+.++ +...+|........+||+.|+......+.+.+
T Consensus 46 ~~~~dlvl~D~~lp~~~g~~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~ 97 (136)
T 3t6k_A 46 KNLPDALICDVLLPGIDGYT-LCKRVRQHPLTKTLPILMLTAQGDISAKIAGF 97 (136)
T ss_dssp HSCCSEEEEESCCSSSCHHH-HHHHHHHSGGGTTCCEEEEECTTCHHHHHHHH
T ss_pred hCCCCEEEEeCCCCCCCHHH-HHHHHHcCCCcCCccEEEEecCCCHHHHHHHH
Confidence 35688999885333333222 22333332111134788888877666666655
No 233
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=34.73 E-value=15 Score=34.12 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=49.3
Q ss_pred ccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHH------HHHhhC---------CCCCceEEeecccccc--
Q 025067 85 WRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA------YLKKIR---------PEVSPKILEYDMRFEQ-- 147 (258)
Q Consensus 85 wqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~------~lk~~~---------~~~~~~LLEyD~RF~~-- 147 (258)
...-||+-...-++.+++.+.-. .+.+|+=.+|=|=.. .+++.. +..+++-.|+|.+-..
T Consensus 148 ~~~G~fyTP~~v~~~mv~~l~~~---~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA 224 (445)
T 2okc_A 148 SGAGQYFTPRPLIQAMVDCINPQ---MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 224 (445)
T ss_dssp TCCGGGCCCHHHHHHHHHHHCCC---TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred ccCCcccCcHHHHHHHHHHhCCC---CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence 45667776666666666655321 345777666654222 222111 2357888998864221
Q ss_pred ------cC-----CccccccCCCCCCchhhhccCccEEEECCCCCCH
Q 025067 148 ------YG-----SDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 148 ------~g-----~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
.| .+++.=|.-.. + ...+||+||+.|||+..
T Consensus 225 ~~nl~l~g~~~~~~~i~~gD~l~~---~--~~~~fD~Iv~NPPf~~~ 266 (445)
T 2okc_A 225 SMNLYLHGIGTDRSPIVCEDSLEK---E--PSTLVDVILANPPFGTR 266 (445)
T ss_dssp HHHHHHTTCCSSCCSEEECCTTTS---C--CSSCEEEEEECCCSSCC
T ss_pred HHHHHHhCCCcCCCCEeeCCCCCC---c--ccCCcCEEEECCCCCCc
Confidence 12 12333332111 1 12479999999999964
No 234
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=34.59 E-value=17 Score=31.23 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=24.9
Q ss_pred ccCccEEEECCCCC---C---H---HHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 168 KHAFSVVVVDPPYL---S---K---ECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 168 k~~fD~Vv~DPPFl---s---e---ec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.+..++||+|.|.. + . .-+..+...++.|++..+..||++|
T Consensus 145 ~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vs 194 (296)
T 1cr0_A 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVIC 194 (296)
T ss_dssp TTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred hcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 45688999999998 3 1 2234566667777664344455554
No 235
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=34.48 E-value=33 Score=24.86 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=33.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCC---CCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARP---GDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~---~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+|--....+.+ ..++.|.+. ...+||+.|+......+.+.+..-..+|.++
T Consensus 58 ~~~dlii~D~~l~~~~g~----~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 118 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNGI----EFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIK 118 (143)
T ss_dssp CCCSEEEEETTCTTSCHH----HHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEES
T ss_pred CCCCEEEEecCCCCCCHH----HHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEEC
Confidence 468999999544333222 233444432 2457888888776666777764444555443
No 236
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=34.46 E-value=2e+02 Score=26.61 Aligned_cols=106 Identities=12% Similarity=0.222 Sum_probs=61.6
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEE--eChhHHHHHH----hh-CCCCCceEEe---eccc------------
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACI--ACPTLYAYLK----KI-RPEVSPKILE---YDMR------------ 144 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~Iacl--stPSly~~lk----~~-~~~~~~~LLE---yD~R------------ 144 (258)
-+-|-|++.+.+.|.+.+.+..+ ..-+++ .++|-..++. .. .|+..+++.+ |+.-
T Consensus 66 ~~gy~Y~~~g~~~Le~~lA~l~g---~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 142 (427)
T 3hvy_A 66 SSGYGYNDIGRDSLDRVYANIFN---TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKV 142 (427)
T ss_dssp CCTTCTTCHHHHHHHHHHHHHHT---CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred CcCCCCCchhHHHHHHHHHHHhC---CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhh
Confidence 46699999998888888887754 222233 1455444443 22 4566666655 5532
Q ss_pred --ccccCCccccccC----CCCCCchhhhc--cCccEEEECC----CCCC---HHHHHHHHHHHHH
Q 025067 145 --FEQYGSDFAFYDY----NQPQDLPLELK--HAFSVVVVDP----PYLS---KECLEKVSETVSF 195 (258)
Q Consensus 145 --F~~~g~~FvfYDy----n~P~~lp~~lk--~~fD~Vv~DP----PFls---eec~eK~A~Tir~ 195 (258)
+..+|-++++.|. ..++.|.+.++ ....+|++.+ |+.. ..-++++++.++.
T Consensus 143 ~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~ 208 (427)
T 3hvy_A 143 GSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIRE 208 (427)
T ss_dssp CCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHH
Confidence 2234546777776 33344444555 5677999999 7653 3334555554444
No 237
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=34.44 E-value=17 Score=35.43 Aligned_cols=98 Identities=17% Similarity=0.109 Sum_probs=48.3
Q ss_pred cccccccccChhHHHHHHHHHHhhcC-CCCCeEEEEeCh--hHHHHHHhh---CCCCCceEEeecccccc--------cC
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACP--TLYAYLKKI---RPEVSPKILEYDMRFEQ--------YG 149 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~-~~~~~IaclstP--Sly~~lk~~---~~~~~~~LLEyD~RF~~--------~g 149 (258)
....-||+=..+-++.|++.+..... ..+.+|+=.||= ++...+.+. ....+++-.|+|..=.. .|
T Consensus 193 ~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g 272 (542)
T 3lkd_A 193 GKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG 272 (542)
T ss_dssp --CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC
Confidence 34566776666667777777663211 134566633333 332222222 12457788888854211 12
Q ss_pred C-----ccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 150 S-----DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 150 ~-----~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
- +++.=|.-.. +.|..-..+||+||+.|||+.
T Consensus 273 i~~~~~~I~~gDtL~~-d~p~~~~~~fD~IvaNPPf~~ 309 (542)
T 3lkd_A 273 VPIENQFLHNADTLDE-DWPTQEPTNFDGVLMNPPYSA 309 (542)
T ss_dssp CCGGGEEEEESCTTTS-CSCCSSCCCBSEEEECCCTTC
T ss_pred CCcCccceEecceecc-cccccccccccEEEecCCcCC
Confidence 1 1122221100 001122367999999999985
No 238
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=34.24 E-value=39 Score=28.22 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=13.5
Q ss_pred hhccCccEEEEC-CCCCCH
Q 025067 166 ELKHAFSVVVVD-PPYLSK 183 (258)
Q Consensus 166 ~lk~~fD~Vv~D-PPFlse 183 (258)
.++..||+||+| ||-++.
T Consensus 140 ~l~~~yD~viiD~pp~~~~ 158 (267)
T 3k9g_A 140 TLYYKYDYIVIDTNPSLDV 158 (267)
T ss_dssp TTCTTCSEEEEEECSSCSH
T ss_pred HhhcCCCEEEEECcCCccH
Confidence 346779999999 676655
No 239
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=34.23 E-value=36 Score=24.02 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=34.6
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCC---CCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARP---GDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~---~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--..+.+.+ +.++.|.+. ...+||+.|+....+.+.+.+..-..+|.++
T Consensus 45 ~~~dlvi~D~~l~~~~g~----~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~K 105 (127)
T 2jba_A 45 PWPDLILLAWMLPGGSGI----QFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITK 105 (127)
T ss_dssp SCCSEEEEESEETTEEHH----HHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEE
T ss_pred cCCCEEEEecCCCCCCHH----HHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeC
Confidence 458999999544333322 223344332 2457899998877777777775555555443
No 240
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=33.85 E-value=1.1e+02 Score=25.97 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=54.6
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccC---C-ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG---S-DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g---~-~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
++.+|+=|||=+=... +.+..+ .+++.+|++... ...| . +|+.=|+.. +.++||+|++
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~fD~v~~ 143 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-------FDEPVDRIVS 143 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-------CCCCCSEEEE
T ss_pred CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-------cCCCccEEEE
Confidence 5779999998764443 333223 679999998532 2222 1 344444432 2578999998
Q ss_pred CCCCCC---------HHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 177 DPPYLS---------KECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 177 DPPFls---------eec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
-..+.. .+-+..+-..+..++++ ++++++.+.
T Consensus 144 ~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~ 184 (302)
T 3hem_A 144 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPD-DGRMLLHTI 184 (302)
T ss_dssp ESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT-TCEEEEEEE
T ss_pred cchHHhcCccccccchhHHHHHHHHHHHhcCC-CcEEEEEEE
Confidence 655422 13346667777778887 567766553
No 241
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=33.83 E-value=21 Score=28.37 Aligned_cols=93 Identities=13% Similarity=-0.006 Sum_probs=53.2
Q ss_pred CCCeEEEEeChhHHH--HHHhhCCCCCceEEeecccccccC----CccccccCCCC-CCchhhhccCccEEEECCCCCCH
Q 025067 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRFEQYG----SDFAFYDYNQP-QDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 111 ~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF~~~g----~~FvfYDyn~P-~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
++.+|+=|||=+=.. .+.+. +.+++.+|++...-... .+|+.-|.... ..++ .++||+|++.-.+-..
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~fD~v~~~~~l~~~ 106 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYE---EEQFDCVIFGDVLEHL 106 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSC---TTCEEEEEEESCGGGS
T ss_pred CCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCC---CCccCEEEECChhhhc
Confidence 568999999865333 34443 36899999987553321 24555565431 1222 2679999986544221
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 184 ECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 184 ec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.-..++-..++.++++ ++.+++++.
T Consensus 107 ~~~~~~l~~~~~~L~~-gG~l~~~~~ 131 (230)
T 3cc8_A 107 FDPWAVIEKVKPYIKQ-NGVILASIP 131 (230)
T ss_dssp SCHHHHHHHTGGGEEE-EEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCC-CCEEEEEeC
Confidence 1123444455555565 456777664
No 242
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=33.63 E-value=67 Score=25.19 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccc----cC--C-ccccccCCCCCCchhhh
Q 025067 97 AETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ----YG--S-DFAFYDYNQPQDLPLEL 167 (258)
Q Consensus 97 a~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~----~g--~-~FvfYDyn~P~~lp~~l 167 (258)
...+.+.+... . ++.+|+=|||=+=... +.+. +.+++.+|++...-. .+ . +|+.-|.... + .
T Consensus 34 ~~~~~~~l~~~-~-~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~--~---~ 104 (218)
T 3ou2_A 34 APAALERLRAG-N-IRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW--T---P 104 (218)
T ss_dssp HHHHHHHHTTT-T-SCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC--C---C
T ss_pred HHHHHHHHhcC-C-CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC--C---C
Confidence 55566655443 2 4679999988764433 3333 458899998864321 12 1 5666666543 1 2
Q ss_pred ccCccEEEECCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 168 KHAFSVVVVDPPY--LSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 168 k~~fD~Vv~DPPF--lseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.++||+|++.--+ +..+-+.++-..+..++++ ++.+++++.
T Consensus 105 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~ 147 (218)
T 3ou2_A 105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAP-GGVVEFVDV 147 (218)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCC-CeEEEEEeC
Confidence 4789999986533 3333235555566666676 456766654
No 243
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=33.53 E-value=89 Score=26.71 Aligned_cols=90 Identities=11% Similarity=0.126 Sum_probs=53.0
Q ss_pred CCCeEEEEeChhHHH--HHHhhCCCCCceEEeec-------ccccccC--C--ccccccCCCCCCchhhhccCccEEEE-
Q 025067 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYD-------MRFEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV- 176 (258)
Q Consensus 111 ~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD-------~RF~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~- 176 (258)
+..+|+-|||=+=.. .+.+..|+.+++.+|++ .++...| + +|+.-|+.++ .+| ..||+|++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~----~~~D~v~~~ 239 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV-DYG----NDYDLVLLP 239 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS-CCC----SCEEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC-CCC----CCCcEEEEc
Confidence 568999999876443 34444677899999998 1222221 1 5677777653 222 34998887
Q ss_pred CCCC-CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 177 DPPY-LS-KECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 177 DPPF-ls-eec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.... .+ ++| .++-..++.++++ +++++++
T Consensus 240 ~~l~~~~~~~~-~~~l~~~~~~L~p-gG~l~i~ 270 (335)
T 2r3s_A 240 NFLHHFDVATC-EQLLRKIKTALAV-EGKVIVF 270 (335)
T ss_dssp SCGGGSCHHHH-HHHHHHHHHHEEE-EEEEEEE
T ss_pred chhccCCHHHH-HHHHHHHHHhCCC-CcEEEEE
Confidence 4432 22 444 4444455555565 4566664
No 244
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=33.39 E-value=59 Score=24.03 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=33.0
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+|--.-..+-++ +.+.++........+||+.|+......+.+.+.....+|.++
T Consensus 60 ~~~dlillD~~lp~~~g~~-l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~K 120 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDGRE-VLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTK 120 (149)
T ss_dssp CCCSEEEECSCCSSSCHHH-HHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEeCCCCCCcHHH-HHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEEC
Confidence 3589999995332222221 233334321112347888888766666677764444555443
No 245
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=32.55 E-value=45 Score=23.31 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=33.2
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--.-..+-+ .+.+.++... + ..+||+.|+......+.+.+..-..+|.++
T Consensus 46 ~~~dlil~D~~l~~~~g~-~~~~~l~~~~-~-~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 104 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNGI-DAIKEIMKID-P-NAKIIVCSAMGQQAMVIEAIKAGAKDFIVK 104 (120)
T ss_dssp HCCSEEEEECSCGGGCHH-HHHHHHHHHC-T-TCCEEEEECTTCHHHHHHHHHTTCCEEEES
T ss_pred cCCCEEEEeCCCCCCcHH-HHHHHHHhhC-C-CCeEEEEeCCCCHHHHHHHHHhCcceeEeC
Confidence 458999999644332222 2233344332 2 457899888776666666664334455443
No 246
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=32.49 E-value=44 Score=29.70 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=30.3
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+| |-.-+-+.. +.+|.... ..+||+.|+....+.+.+.+..-..+|.+
T Consensus 48 ~~~dlvllD~~mp~~~G~~~~----~~lr~~~~--~~pii~lt~~~~~~~~~~a~~~ga~~yl~ 105 (394)
T 3eq2_A 48 EQPDLVICDLRMPQIDGLELI----RRIRQTAS--ETPIIVLSGAGVMSDAVEALRLGAADYLI 105 (394)
T ss_dssp SCCSEEEECCCSSSSCTHHHH----HHHHHTTC--CCCEEEC---CHHHHHHHHHHHTCSEECC
T ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHHhhCC--CCcEEEEEcCCCHHHHHHHHhcChhhEEE
Confidence 568899988 544444433 33343322 45899999987777777776333344443
No 247
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=32.18 E-value=68 Score=30.37 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcC-CCCCeEEEEeChhHHHHHH-hhCCCCCceEEeecc-------cccccC--C--ccccccCCCCCCch
Q 025067 98 ETVAQEAVSLCS-DSDSRVACIACPTLYAYLK-KIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDLP 164 (258)
Q Consensus 98 ~~La~~l~~~a~-~~~~~IaclstPSly~~lk-~~~~~~~~~LLEyD~-------RF~~~g--~--~FvfYDyn~P~~lp 164 (258)
+.+.+.+++... .++.+|+-|||=+=...+. ...+..+++.+|.+. +....| + +|+.=|+.+- .
T Consensus 144 ~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~-- 220 (480)
T 3b3j_A 144 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-S-- 220 (480)
T ss_dssp HHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTC-C--
T ss_pred HHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhC-c--
Confidence 334555554432 1467999999977443322 124556899999986 222222 2 4555555431 1
Q ss_pred hhhccCccEEEECCCC---CCHHHHHHHHHHHHHhcCCCCCcEEE
Q 025067 165 LELKHAFSVVVVDPPY---LSKECLEKVSETVSFLARPGDSKLLL 206 (258)
Q Consensus 165 ~~lk~~fD~Vv~DPPF---lseec~eK~A~Tir~L~k~~~~kiil 206 (258)
+.++||+||+.||+ ..++.++.+... +.++++ ++.+++
T Consensus 221 --~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~-~~~Lkp-gG~li~ 261 (480)
T 3b3j_A 221 --LPEQVDIIISEPMGYMLFNERMLESYLHA-KKYLKP-SGNMFP 261 (480)
T ss_dssp --CSSCEEEEECCCCHHHHTCHHHHHHHHHG-GGGEEE-EEEEES
T ss_pred --cCCCeEEEEEeCchHhcCcHHHHHHHHHH-HHhcCC-CCEEEE
Confidence 23579999999993 235555555433 345555 345543
No 248
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=31.85 E-value=18 Score=35.13 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=12.8
Q ss_pred cCccEEEECCCCCC
Q 025067 169 HAFSVVVVDPPYLS 182 (258)
Q Consensus 169 ~~fD~Vv~DPPFls 182 (258)
.+||+||+.|||+.
T Consensus 328 ~~fD~Iv~NPPf~~ 341 (544)
T 3khk_A 328 LRADFVMTNPPFNM 341 (544)
T ss_dssp CCEEEEEECCCSSC
T ss_pred ccccEEEECCCcCC
Confidence 57999999999996
No 249
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=31.82 E-value=55 Score=23.35 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=33.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--....+-+ .+.+.++....+ ..+||+.|+....+.+.+.+..-..+|.++
T Consensus 47 ~~~dlvllD~~l~~~~g~-~~~~~l~~~~~~-~~~ii~ls~~~~~~~~~~~~~~ga~~~l~K 106 (130)
T 1dz3_A 47 KRPDILLLDIIMPHLDGL-AVLERIRAGFEH-QPNVIMLTAFGQEDVTKKAVELGASYFILK 106 (130)
T ss_dssp HCCSEEEEESCCSSSCHH-HHHHHHHHHCSS-CCEEEEEEETTCHHHHHHHHHTTCEEEEEC
T ss_pred CCCCEEEEecCCCCCCHH-HHHHHHHhcCCC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Confidence 458999998543322222 233344432222 347888998777777777764444555444
No 250
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=31.77 E-value=16 Score=26.62 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=35.5
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--....+.++ +...+|.... ..+||+.|+....+.+.+.+..-..+|.++
T Consensus 58 ~~~dlvi~D~~l~~~~g~~-~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 116 (135)
T 3snk_A 58 TRPGIVILDLGGGDLLGKP-GIVEARALWA--TVPLIAVSDELTSEQTRVLVRMNASDWLHK 116 (135)
T ss_dssp CCCSEEEEEEETTGGGGST-THHHHHGGGT--TCCEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred cCCCEEEEeCCCCCchHHH-HHHHHHhhCC--CCcEEEEeCCCCHHHHHHHHHcCcHhhccC
Confidence 5689999995544433322 2233343332 458999999877777777764444555544
No 251
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=31.74 E-value=19 Score=29.08 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=13.5
Q ss_pred hh-ccCccEEEEC-CCCCCH
Q 025067 166 EL-KHAFSVVVVD-PPYLSK 183 (258)
Q Consensus 166 ~l-k~~fD~Vv~D-PPFlse 183 (258)
.+ +..||+||+| ||.++.
T Consensus 126 ~l~~~~yD~viiD~pp~~~~ 145 (254)
T 3kjh_A 126 ALFLDKKEAVVMDMGAGIEH 145 (254)
T ss_dssp HHHHTCCSEEEEEECTTCTT
T ss_pred HhccCCCCEEEEeCCCcccH
Confidence 44 6779999999 776654
No 252
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=31.65 E-value=55 Score=28.58 Aligned_cols=90 Identities=11% Similarity=0.000 Sum_probs=50.0
Q ss_pred CCCeEEEEeChhHHHHHH--hh-CCCCCceEEeeccccc--------cc-------------CC-ccccccCCCCCCchh
Q 025067 111 SDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDMRFE--------QY-------------GS-DFAFYDYNQPQDLPL 165 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~RF~--------~~-------------g~-~FvfYDyn~P~~lp~ 165 (258)
++.+|+=|||=+=+..+. +. .+..+++-+|++..+- .+ .. +|+.=|..+.. .
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~---~ 181 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT---E 181 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc---c
Confidence 678999999988665543 32 4557899999986432 11 11 34444544321 1
Q ss_pred hh-ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 166 EL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 166 ~l-k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
.+ .++||+||+|+|--.. +...+..++++ ++.+++.++
T Consensus 182 ~~~~~~fD~V~~~~~~~~~-----~l~~~~~~Lkp-gG~lv~~~~ 220 (336)
T 2b25_A 182 DIKSLTFDAVALDMLNPHV-----TLPVFYPHLKH-GGVCAVYVV 220 (336)
T ss_dssp ------EEEEEECSSSTTT-----THHHHGGGEEE-EEEEEEEES
T ss_pred ccCCCCeeEEEECCCCHHH-----HHHHHHHhcCC-CcEEEEEeC
Confidence 12 3579999999875422 22333444555 446666554
No 253
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=31.32 E-value=13 Score=29.03 Aligned_cols=100 Identities=8% Similarity=0.105 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccc--------ccC--C-ccccccCCCCCCch
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QYG--S-DFAFYDYNQPQDLP 164 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~--------~~g--~-~FvfYDyn~P~~lp 164 (258)
..|.+.+... ++.+|+=|||=+=... +.+. +.+++.+|++...- ..+ . +|+.-|..+ ++
T Consensus 22 ~~l~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~ 93 (199)
T 2xvm_A 22 SEVLEAVKVV---KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN---LT 93 (199)
T ss_dssp HHHHHHTTTS---CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG---CC
T ss_pred HHHHHHhhcc---CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh---CC
Confidence 3444444322 5679999988654433 3332 45899999975321 111 1 344444432 12
Q ss_pred hhhccCccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 165 LELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 165 ~~lk~~fD~Vv~DPPFl--seec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
. .++||+|++..++- ..+-..++-..+..++++ ++.+++++
T Consensus 94 ~--~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~-gG~l~~~~ 136 (199)
T 2xvm_A 94 F--DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKP-GGYNLIVA 136 (199)
T ss_dssp C--CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred C--CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCC-CeEEEEEE
Confidence 1 57899999987654 332345666666777776 45655543
No 254
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=31.07 E-value=56 Score=22.77 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=29.9
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|--....+-++ +...++... ...++|+.|+......+.+.+..-..+|.+
T Consensus 43 ~~~dlil~D~~l~~~~g~~-~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 100 (121)
T 2pl1_A 43 HIPDIAIVDLGLPDEDGLS-LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVT 100 (121)
T ss_dssp SCCSEEEECSCCSSSCHHH-HHHHHHHTT--CCSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEecCCCCCCHHH-HHHHHHhcC--CCCCEEEEecCCCHHHHHHHHHcCccceEE
Confidence 4578888885443322221 223333221 135788888866655556665333344443
No 255
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=30.60 E-value=40 Score=28.05 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=33.8
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
...+|+||+|--.-..+-++ .++.|.+....+||+.|+....+.+.+.+..-..+|.+
T Consensus 79 ~~~~DlvllD~~lp~~~G~~----l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~ 136 (249)
T 3q9s_A 79 EDHPDLILLDLGLPDFDGGD----VVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLI 136 (249)
T ss_dssp HSCCSEEEEECCSCHHHHHH----HHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCCCEEEEcCCCCCCCHHH----HHHHHHcCCCCCEEEEECCCCHHHHHHHHHCCCcEEEE
Confidence 35689999997655444332 23333332245789989877766666666322334433
No 256
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=30.29 E-value=9.9 Score=31.27 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=28.6
Q ss_pred ccccccCCCCCCchhhhccCccEEEECCCCC----CHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 151 DFAFYDYNQPQDLPLELKHAFSVVVVDPPYL----SKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 151 ~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFl----seec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+|+.-|..++..++....++||+||+---+- ..+-..++-..+..++++ ++.+++++
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~ 198 (265)
T 2i62_A 138 QVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP-GGFLVMVD 198 (265)
T ss_dssp EEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred eEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC-CcEEEEEe
Confidence 4555666554322322237899998743222 211233444444555666 45666643
No 257
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=30.01 E-value=58 Score=23.48 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=31.6
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|--....+-++ +.+.++... + ..+||+.|+....+.+.+.+..-..+|.+
T Consensus 46 ~~~dlvl~D~~l~~~~g~~-~~~~l~~~~-~-~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 103 (132)
T 3crn_A 46 EFFNLALFXIKLPDMEGTE-LLEKAHKLR-P-GMKKIMVTGYASLENSVFSLNAGADAYIM 103 (132)
T ss_dssp SCCSEEEECSBCSSSBHHH-HHHHHHHHC-T-TSEEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEecCCCCCchHH-HHHHHHhhC-C-CCcEEEEeccccHHHHHHHHhccchhhcc
Confidence 5689999995433322222 223333322 2 45788888876666666666333445543
No 258
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=30.00 E-value=1.2e+02 Score=24.38 Aligned_cols=112 Identities=15% Similarity=0.039 Sum_probs=62.8
Q ss_pred ccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccc--------ccc------------c
Q 025067 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMR--------FEQ------------Y 148 (258)
Q Consensus 91 WYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~R--------F~~------------~ 148 (258)
|...+....|.+.+..+...++.+|+-|||=+=+.. |.+. +.+++-+|+... ... +
T Consensus 2 w~~~~~~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~ 79 (203)
T 1pjz_A 2 SHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 79 (203)
T ss_dssp -CCSSSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEE
T ss_pred CCcccCCHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccc
Confidence 555555556666665543225689999998755443 3332 357888888742 111 1
Q ss_pred --CC-ccccccCCCCCCchhhhccCccEEEECCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 149 --GS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPY--LSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 149 --g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPF--lseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+. +|+.=|..+ +|..-.++||+|++=--| +..+-..++...+..++|+ +++++++|
T Consensus 80 ~~~~v~~~~~d~~~---l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp-gG~~~l~~ 140 (203)
T 1pjz_A 80 AAPGIEIWCGDFFA---LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ-ACSGLLIT 140 (203)
T ss_dssp ECSSSEEEEECCSS---STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS-EEEEEEEE
T ss_pred cCCccEEEECcccc---CCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC-CcEEEEEE
Confidence 11 566666543 332212689998853222 2333345667778888888 55655444
No 259
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=29.99 E-value=43 Score=26.58 Aligned_cols=93 Identities=13% Similarity=0.177 Sum_probs=52.9
Q ss_pred CCCeEEEEeChhHH--HHHHhh-CCCCCceEEeeccc--------ccccC--C-ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLY--AYLKKI-RPEVSPKILEYDMR--------FEQYG--S-DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly--~~lk~~-~~~~~~~LLEyD~R--------F~~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
++.+|+=|||=+=. ..+.+. .|..+++.+|++.. +...+ . .|+.-|... ++ .-.++||+|++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~-~~~~~fD~v~~ 112 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK---IP-LPDNTVDFIFM 112 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB---CS-SCSSCEEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc---CC-CCCCCeeEEEe
Confidence 56799999886532 223333 35678999999853 32222 1 455555543 11 11367999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 177 DPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 177 DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.-.+-...-...+-..+..++++ ++.+++.+
T Consensus 113 ~~~l~~~~~~~~~l~~~~~~Lkp-gG~l~i~~ 143 (219)
T 3dh0_A 113 AFTFHELSEPLKFLEELKRVAKP-FAYLAIID 143 (219)
T ss_dssp ESCGGGCSSHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred ehhhhhcCCHHHHHHHHHHHhCC-CeEEEEEE
Confidence 76554321134455555566666 45666653
No 260
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=29.85 E-value=68 Score=25.35 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=27.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|--....+-++ +...++... + ..+||+.|+....+.+.+.+..-..+|.+
T Consensus 45 ~~~dlvllD~~l~~~~g~~-~~~~lr~~~-~-~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 102 (225)
T 1kgs_A 45 EPFDVVILDIMLPVHDGWE-ILKSMRESG-V-NTPVLMLTALSDVEYRVKGLNMGADDYLP 102 (225)
T ss_dssp SCCSEEEEESCCSSSCHHH-HHHHHHHTT-C-CCCEEEEESSCHHHHHHHTCCCCCSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHH-HHHHHHhcC-C-CCCEEEEeCCCCHHHHHHHHhCCccEEEe
Confidence 4567777774332222121 222233221 1 34677777766656566665433344433
No 261
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=29.75 E-value=23 Score=27.71 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=32.8
Q ss_pred cCccEEEECC---CCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDP---PYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DP---PFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|- ---+-+. ...++.... ..+||+.|+....+.+.+.+..-..+|.++
T Consensus 50 ~~~dlvl~D~~lp~~~g~~~----~~~l~~~~~--~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~K 108 (184)
T 3rqi_A 50 EKFEFITVXLHLGNDSGLSL----IAPLCDLQP--DARILVLTGYASIATAVQAVKDGADNYLAK 108 (184)
T ss_dssp SCCSEEEECSEETTEESHHH----HHHHHHHCT--TCEEEEEESSCCHHHHHHHHHHTCSEEEES
T ss_pred CCCCEEEEeccCCCccHHHH----HHHHHhcCC--CCCEEEEeCCCCHHHHHHHHHhCHHHheeC
Confidence 5689999994 3333333 233343322 458999999877777777763333444433
No 262
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=29.60 E-value=23 Score=24.78 Aligned_cols=57 Identities=7% Similarity=0.128 Sum_probs=30.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|.-....+-++ +.+.++ +....++|+.|+......+.+.+..-..+|.+
T Consensus 44 ~~~dlvi~D~~l~~~~g~~-~~~~l~---~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 100 (121)
T 1zh2_A 44 RKPDLIILDLGLPDGDGIE-FIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLS 100 (121)
T ss_dssp HCCSEEEEESEETTEEHHH-HHHHHH---TTCCCCEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEEeCCCCCCcHHH-HHHHHH---hCCCCcEEEEECCCCHHHHHHHHhcCCCeEEe
Confidence 4688999996443332222 233334 22245788888866666566655222334443
No 263
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=29.29 E-value=21 Score=26.46 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=27.6
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
..+|+||+|--....+-+ .+...++... + ..+||++|+....+.+.+.+..-..+|.+
T Consensus 48 ~~~dlvllD~~lp~~~g~-~l~~~l~~~~-~-~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 105 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDGI-ELVDNILKLY-P-DCSVIFMSGYSDKEYLKAAIKFRAIRYVE 105 (141)
T ss_dssp SCCSEEEEESCCSSSCHH-HHHHHHHHHC-T-TCEEEEECCSTTTCCC------CCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHhhC-C-CCcEEEEeCCCcHHHHHHHHhCCccEEEe
Confidence 468999998544332222 2333344332 2 34788888865544444554333344443
No 264
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=29.25 E-value=65 Score=23.15 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=26.2
Q ss_pred cEEEEC---CCCCCHHHHHHHHHHHH-HhcCC--CCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 172 SVVVVD---PPYLSKECLEKVSETVS-FLARP--GDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 172 D~Vv~D---PPFlseec~eK~A~Tir-~L~k~--~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
|+||+| |..-+.+... .++ ..... ...+||+.|+......+.+.+..-..+|.+
T Consensus 52 dlvllD~~lp~~~g~~~~~----~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 111 (136)
T 1dcf_A 52 KVVFMDVCMPGVENYQIAL----RIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLL 111 (136)
T ss_dssp SEEEEECCSSTTTTTHHHH----HHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEE
T ss_pred CEEEEeCCCCCCcHHHHHH----HHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEE
Confidence 888888 3333443333 333 12111 112577777766666556655333344433
No 265
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=29.09 E-value=62 Score=27.72 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=62.6
Q ss_pred ccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHH--HHHHhhCCCCCceEEeecccc--------ccc----------CC
Q 025067 91 WYDAVTAETVAQEAVSLCSDSDSRVACIACPTLY--AYLKKIRPEVSPKILEYDMRF--------EQY----------GS 150 (258)
Q Consensus 91 WYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly--~~lk~~~~~~~~~LLEyD~RF--------~~~----------g~ 150 (258)
|..+..+..+++.+..... +..+|+=|||=+=. ..+.+ .+..+++.+|++... ... .-
T Consensus 15 ~~k~~l~~~~~~~l~~~~~-~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 92 (313)
T 3bgv_A 15 WMKSVLIGEFLEKVRQKKK-RDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSA 92 (313)
T ss_dssp HHHHHHHHHHHHHHHHTC---CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEE
T ss_pred HHHHHHHHHHHHHhhhccC-CCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceE
Confidence 3344445555555544322 56799999987533 23333 345688999987532 211 01
Q ss_pred ccccccCCCCCCchhhh---ccCccEEEECCCC----CCHHHHHHHHHHHHHhcCCCCCcEEEechHH
Q 025067 151 DFAFYDYNQPQDLPLEL---KHAFSVVVVDPPY----LSKECLEKVSETVSFLARPGDSKLLLLTGEV 211 (258)
Q Consensus 151 ~FvfYDyn~P~~lp~~l---k~~fD~Vv~DPPF----lseec~eK~A~Tir~L~k~~~~kiil~Tg~~ 211 (258)
+|+.-|..... +...+ .++||+|++--.+ .+.+-...+-..+..++++ ++.++++|...
T Consensus 93 ~~~~~D~~~~~-~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~~~~ 158 (313)
T 3bgv_A 93 EFITADSSKEL-LIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP-GGYFIGTTPNS 158 (313)
T ss_dssp EEEECCTTTSC-STTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE-EEEEEEEEECH
T ss_pred EEEEecccccc-hhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC-CcEEEEecCCh
Confidence 46666654421 11112 2579999986544 2333344555555556666 45777777643
No 266
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=28.71 E-value=1.9e+02 Score=23.80 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=53.7
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccccC----C-ccccccCCCCCCchhhhccCccEEEECCCCCCHHH
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYG----S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKEC 185 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~g----~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec 185 (258)
++.+|+=|||=+=...+.-..++.+++-+|++...-... . +|+.-|... ..++ .++||+|++--.+..-.-
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~-~~~~---~~~fD~v~~~~~l~~~~~ 109 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAEN-LALP---DKSVDGVISILAIHHFSH 109 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTS-CCSC---TTCBSEEEEESCGGGCSS
T ss_pred CCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhh-CCCC---CCCEeEEEEcchHhhccC
Confidence 578999999977655543323667899999987443321 1 455556543 1121 368999988766543222
Q ss_pred HHHHHHHHHHhcCCCCCcEEEec
Q 025067 186 LEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 186 ~eK~A~Tir~L~k~~~~kiil~T 208 (258)
+.++-..+..++| + +++++.+
T Consensus 110 ~~~~l~~~~~~Lk-g-G~~~~~~ 130 (261)
T 3ege_A 110 LEKSFQEMQRIIR-D-GTIVLLT 130 (261)
T ss_dssp HHHHHHHHHHHBC-S-SCEEEEE
T ss_pred HHHHHHHHHHHhC-C-cEEEEEE
Confidence 3444444555555 3 3555544
No 267
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=28.36 E-value=53 Score=22.75 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=26.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
+.+|+||+|--....+-++ +...++.. + ..+||+.|+......+.+.+
T Consensus 44 ~~~dlvl~D~~l~~~~g~~-~~~~l~~~--~-~~~ii~~s~~~~~~~~~~~~ 91 (120)
T 2a9o_A 44 EQPDIIILDLMLPEIDGLE-VAKTIRKT--S-SVPILMLSAKDSEFDKVIGL 91 (120)
T ss_dssp HCCSEEEECSSCSSSCHHH-HHHHHHHH--C-CCCEEEEESCCSHHHHHHHH
T ss_pred CCCCEEEEeccCCCCCHHH-HHHHHHhC--C-CCCEEEEecCCchHHHHHHH
Confidence 4688999995443322222 33344432 2 34788888866655555555
No 268
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=28.34 E-value=54 Score=25.77 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=33.7
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
.+.+|+||+|--....+-++ +...++... ..+||+.|+....+.+.+.+..-..+|.+
T Consensus 56 ~~~~dlvi~D~~~p~~~g~~-~~~~l~~~~---~~pii~lt~~~~~~~~~~~~~~ga~~~l~ 113 (205)
T 1s8n_A 56 LHKPDLVIMDVKMPRRDGID-AASEIASKR---IAPIVVLTAFSQRDLVERARDAGAMAYLV 113 (205)
T ss_dssp HHCCSEEEEESSCSSSCHHH-HHHHHHHTT---CSCEEEEEEGGGHHHHHTTGGGSCEEEEE
T ss_pred hcCCCEEEEeCCCCCCChHH-HHHHHHhcC---CCCEEEEecCCCHHHHHHHHhcCCcEEEe
Confidence 35689999995443322222 223333322 23799999988888777776443444443
No 269
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=28.21 E-value=86 Score=24.89 Aligned_cols=104 Identities=5% Similarity=-0.034 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc-----cC-C-ccccccCCCCCCchhhhccC
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ-----YG-S-DFAFYDYNQPQDLPLELKHA 170 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~-----~g-~-~FvfYDyn~P~~lp~~lk~~ 170 (258)
..+.+.+.... ++.+|+=|||=+=.....-.....+++-+|++...-. ++ . +|+.-|..+. . ..++
T Consensus 31 ~~~~~~l~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~--~---~~~~ 103 (250)
T 2p7i_A 31 PFMVRAFTPFF--RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDA--Q---LPRR 103 (250)
T ss_dssp HHHHHHHGGGC--CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC--C---CSSC
T ss_pred HHHHHHHHhhc--CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc--C---cCCc
Confidence 44555555442 5678999998765444322112347899999864321 11 1 4554454432 1 2467
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHH-HhcCCCCCcEEEech
Q 025067 171 FSVVVVDPPYLSKECLEKVSETVS-FLARPGDSKLLLLTG 209 (258)
Q Consensus 171 fD~Vv~DPPFlseec~eK~A~Tir-~L~k~~~~kiil~Tg 209 (258)
||+|++-=-+-.-.-..++-..++ .++++ ++++++.+.
T Consensus 104 fD~v~~~~~l~~~~~~~~~l~~~~~~~Lkp-gG~l~i~~~ 142 (250)
T 2p7i_A 104 YDNIVLTHVLEHIDDPVALLKRINDDWLAE-GGRLFLVCP 142 (250)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTTEEE-EEEEEEEEE
T ss_pred ccEEEEhhHHHhhcCHHHHHHHHHHHhcCC-CCEEEEEcC
Confidence 998887211100000133444455 55666 457777663
No 270
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=27.92 E-value=53 Score=27.43 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=40.1
Q ss_pred CCCCCchhhh-ccCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 158 NQPQDLPLEL-KHAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 158 n~P~~lp~~l-k~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
....+.-+.+ .+.+|+||+| |---+.+. .+.+|.... ..+||+.|+..+.....+.+..-+.+|.++
T Consensus 160 ~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l----~~~ir~~~~--~~piI~lt~~~~~~~~~~~~~~G~~~~l~K 230 (254)
T 2ayx_A 160 NDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL----TQRIRQLGL--TLPVIGVTANALAEEKQRCLESGMDSCLSK 230 (254)
T ss_dssp CCSHHHHHHHHHSCCSEEEEEESSCSSCCHHH----HHHHHHHHC--CSCEEEEESSTTSHHHHHHHHCCCEEEEES
T ss_pred CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHH----HHHHHhcCC--CCcEEEEECCCCHHHHHHHHHcCCceEEEC
Confidence 3443333334 3679999999 54444443 334444332 357999999887777777774444555443
No 271
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=27.82 E-value=58 Score=27.82 Aligned_cols=102 Identities=8% Similarity=0.049 Sum_probs=57.6
Q ss_pred HHHHHHHhhcC-CCCCeEEEEeChhHHH--HHHhhCCCCCceEEeecccc--------cccC--C--ccccccCCCCCCc
Q 025067 99 TVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQDL 163 (258)
Q Consensus 99 ~La~~l~~~a~-~~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDyn~P~~l 163 (258)
.+.+.+++... .++.+|+=|||=+=.. .+.+.. +.+++.+|++... ...| . +|+.=|+. ++
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~ 152 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE---DF 152 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG---GC
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH---HC
Confidence 34445555432 2567999999865332 233322 3588999987543 2222 1 34444432 22
Q ss_pred hhhhccCccEEEECCCCC--CHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 164 PLELKHAFSVVVVDPPYL--SKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 164 p~~lk~~fD~Vv~DPPFl--seec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
| ++||+|++.-.+- +.+-..++-..+..++++ ++++++.+.
T Consensus 153 ~----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 195 (318)
T 2fk8_A 153 A----EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA-DGRMTVQSS 195 (318)
T ss_dssp C----CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT-TCEEEEEEE
T ss_pred C----CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCC-CcEEEEEEe
Confidence 2 7899999876653 223345566666677777 557766543
No 272
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=27.61 E-value=3e+02 Score=23.88 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=54.3
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccC--C--ccccccCCCCCCchhhhccCccEEEE
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~ 176 (258)
+..+|+=|||=+=... |.+..|+.+++.+|+ ... ...| + +|+.-|+.++ .++ ..|+|++
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~-----~~D~v~~ 262 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-SYP-----EADAVLF 262 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-CCC-----CCSEEEE
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-CCC-----CCCEEEE
Confidence 5679999998775443 445577788999998 433 1111 1 5667777654 222 2398888
Q ss_pred CCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 177 DPPY--LSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 177 DPPF--lseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
--.+ ...+-..++-..++.++++ +++++++.
T Consensus 263 ~~vlh~~~d~~~~~~l~~~~~~L~p-gG~l~i~e 295 (359)
T 1x19_A 263 CRILYSANEQLSTIMCKKAFDAMRS-GGRLLILD 295 (359)
T ss_dssp ESCGGGSCHHHHHHHHHHHHTTCCT-TCEEEEEE
T ss_pred echhccCCHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 6654 3333234455555566666 56776654
No 273
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=27.26 E-value=2.9e+02 Score=23.55 Aligned_cols=86 Identities=8% Similarity=0.026 Sum_probs=53.9
Q ss_pred CeEEEEeChhHHHH--HHhhCCCCCceEEeeccccc--------cc--CC--ccccccCCCCCCchhhhccCccEEEECC
Q 025067 113 SRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFE--------QY--GS--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 113 ~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~--------~~--g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
.+|+=|||=+=... |.+..|+.+++.+|. ...- .. .+ +|+.-|+.+| +| +.||+|++--
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~----~~~D~v~~~~ 241 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE--VP----SNGDIYLLSR 241 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC--CC----SSCSEEEEES
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC--CC----CCCCEEEEch
Confidence 79999998774433 444567788999998 4332 11 11 5777777664 33 4699988866
Q ss_pred CC---CCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 179 PY---LSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 179 PF---lseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.+ ..++| .++-..++.++++ +++++++
T Consensus 242 vl~~~~~~~~-~~~l~~~~~~L~p-gG~l~i~ 271 (334)
T 2ip2_A 242 IIGDLDEAAS-LRLLGNCREAMAG-DGRVVVI 271 (334)
T ss_dssp CGGGCCHHHH-HHHHHHHHHHSCT-TCEEEEE
T ss_pred hccCCCHHHH-HHHHHHHHHhcCC-CCEEEEE
Confidence 54 23444 3454555555666 5677765
No 274
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=27.16 E-value=51 Score=23.11 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=30.0
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|--....+.++ +...++. ....+||+.|+......+.+.+..-..+|.+
T Consensus 45 ~~~dlvi~d~~l~~~~g~~-~~~~l~~---~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~ 101 (122)
T 1zgz_A 45 QSVDLILLDINLPDENGLM-LTRALRE---RSTVGIILVTGRSDRIDRIVGLEMGADDYVT 101 (122)
T ss_dssp SCCSEEEEESCCSSSCHHH-HHHHHHT---TCCCEEEEEESSCCHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEEeCCCCCCChHH-HHHHHHh---cCCCCEEEEECCCChhhHHHHHHhCHHHHcc
Confidence 4689999985443322222 2333333 2245788888866655555555222334433
No 275
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=27.14 E-value=47 Score=23.29 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=23.6
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
+.+|+||+|--....+-++ +.+.++........+||+.|+......+.+.+
T Consensus 44 ~~~dlvi~D~~l~~~~g~~-~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~ 94 (124)
T 1mb3_A 44 NKPDLILMDIQLPEISGLE-VTKWLKEDDDLAHIPVVAVTAFAMKGDEERIR 94 (124)
T ss_dssp HCCSEEEEESBCSSSBHHH-HHHHHHHSTTTTTSCEEEEC------CHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHH-HHHHHHcCccccCCcEEEEECCCCHHHHHHHH
Confidence 4588999885443322222 33334432111135788888876666555555
No 276
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=27.13 E-value=83 Score=26.00 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=58.1
Q ss_pred CCCeEEEEeChhHHHHHHhh-CCCCCceEEeeccc--------ccccC--C--ccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMR--------FEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~R--------F~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
++.+|+=|||=+=...+.-. .+..+++.+|++.. +...| + +|+.-|+.+ +| .-.++||+|++.
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~-~~~~~fD~i~~~ 121 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD---LP-FRNEELDLIWSE 121 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS---CC-CCTTCEEEEEES
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh---CC-CCCCCEEEEEEc
Confidence 57899999997755543321 35568999999854 22222 1 566666643 22 013689999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 178 PPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 178 PPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.++-..+ ..++-..+..++++ ++.+++.+
T Consensus 122 ~~~~~~~-~~~~l~~~~~~Lkp-gG~l~~~~ 150 (267)
T 3kkz_A 122 GAIYNIG-FERGLNEWRKYLKK-GGYLAVSE 150 (267)
T ss_dssp SCGGGTC-HHHHHHHHGGGEEE-EEEEEEEE
T ss_pred CCceecC-HHHHHHHHHHHcCC-CCEEEEEE
Confidence 8876543 35555566666776 45676654
No 277
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=27.11 E-value=36 Score=24.16 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=29.1
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCC---CCCcEEEechHHHHHHHHHHh
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARP---GDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~---~~~kiil~Tg~~me~~i~kll 220 (258)
.+.+|+||+|--.-..+-+ ..++.|.+. ...+||+.|+......+.+.+
T Consensus 49 ~~~~dlvl~D~~l~~~~g~----~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~ 100 (129)
T 1p6q_A 49 QNPHHLVISDFNMPKMDGL----GLLQAVRANPATKKAAFIILTAQGDRALVQKAA 100 (129)
T ss_dssp TSCCSEEEECSSSCSSCHH----HHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHH----HHHHHHhcCccccCCCEEEEeCCCCHHHHHHHH
Confidence 3568999999544332222 234444432 245788888876666666665
No 278
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=27.07 E-value=79 Score=22.91 Aligned_cols=11 Identities=18% Similarity=0.159 Sum_probs=6.6
Q ss_pred cCccEEEECCC
Q 025067 169 HAFSVVVVDPP 179 (258)
Q Consensus 169 ~~fD~Vv~DPP 179 (258)
..+|+||+|--
T Consensus 46 ~~~dlvi~D~~ 56 (138)
T 3c3m_A 46 TPPDLVLLDIM 56 (138)
T ss_dssp SCCSEEEEESC
T ss_pred cCCCEEEEeCC
Confidence 34677777743
No 279
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=26.66 E-value=2.4e+02 Score=24.04 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=55.7
Q ss_pred CCCeEEEEeChh-----HHHHHHhhCCCCCceEEeeccc--------ccccCC-ccccccCCCCCCc---h---hhhc-c
Q 025067 111 SDSRVACIACPT-----LYAYLKKIRPEVSPKILEYDMR--------FEQYGS-DFAFYDYNQPQDL---P---LELK-H 169 (258)
Q Consensus 111 ~~~~IaclstPS-----ly~~lk~~~~~~~~~LLEyD~R--------F~~~g~-~FvfYDyn~P~~l---p---~~lk-~ 169 (258)
+..+|+=|||=+ +...+.+..|+.+++.+|+|.. +...+. +|+.=|+..+..+ | +.+. .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 347899888754 5555666577789999999843 222222 6777788765322 1 2232 4
Q ss_pred CccEEEECC--CCCCH-HHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 170 AFSVVVVDP--PYLSK-ECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 170 ~fD~Vv~DP--PFlse-ec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+||+|++== -|+.. +. ..+-..+.-.+++ ++.++++..
T Consensus 157 ~~d~v~~~~vlh~~~d~~~-~~~l~~~~~~L~p-GG~l~i~~~ 197 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVV-DRVVGAYRDALAP-GSYLFMTSL 197 (274)
T ss_dssp SCCEEEETTTGGGSCTTTH-HHHHHHHHHHSCT-TCEEEEEEE
T ss_pred CCEEEEEechhhhCCcHHH-HHHHHHHHHhCCC-CcEEEEEEe
Confidence 689887642 12222 23 3344445555566 456766543
No 280
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=26.51 E-value=84 Score=28.32 Aligned_cols=96 Identities=7% Similarity=0.023 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHh-hCCCCCceEEeecccc--------cccC--C--ccccccCCCCCCc
Q 025067 98 ETVAQEAVSLCS-DSDSRVACIACPTLYAYLKK-IRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQDL 163 (258)
Q Consensus 98 ~~La~~l~~~a~-~~~~~IaclstPSly~~lk~-~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDyn~P~~l 163 (258)
..+.+.+.+... .++.+|+-|||=+=...+.- .....+++.+|.+ .. ...| + .|+.=|..+ +
T Consensus 49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~ 124 (376)
T 3r0q_C 49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED---I 124 (376)
T ss_dssp HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG---C
T ss_pred HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh---c
Confidence 334444444321 15789999999874443321 1223489999998 42 2221 1 344334322 1
Q ss_pred hhhhccCccEEEECC-C-CCC-HHHHHHHHHHHHHhcCC
Q 025067 164 PLELKHAFSVVVVDP-P-YLS-KECLEKVSETVSFLARP 199 (258)
Q Consensus 164 p~~lk~~fD~Vv~DP-P-Fls-eec~eK~A~Tir~L~k~ 199 (258)
+ +.++||+||+++ + |+. +..+..+-..+..++++
T Consensus 125 ~--~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkp 161 (376)
T 3r0q_C 125 S--LPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKP 161 (376)
T ss_dssp C--CSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEE
T ss_pred C--cCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCC
Confidence 1 227899999998 3 332 23456666777666776
No 281
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=26.20 E-value=37 Score=26.61 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=58.6
Q ss_pred HHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccc--------ccccC---C-ccccccCCCCCCch
Q 025067 99 TVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMR--------FEQYG---S-DFAFYDYNQPQDLP 164 (258)
Q Consensus 99 ~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~R--------F~~~g---~-~FvfYDyn~P~~lp 164 (258)
.+++.+.+.......+|+=|||=+=... +.+. ++.+++.+|++.. +...+ . +|+.-|..+ +|
T Consensus 31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~ 106 (219)
T 3dlc_A 31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN---IP 106 (219)
T ss_dssp HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB---CS
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH---CC
Confidence 4445555444323348999988664433 3333 5668999999843 33222 1 455556543 22
Q ss_pred hhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 165 LELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 165 ~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.-.++||+|++...+-.-+-...+-..+..++++ +++++++
T Consensus 107 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~~~ 147 (219)
T 3dlc_A 107 -IEDNYADLIVSRGSVFFWEDVATAFREIYRILKS-GGKTYIG 147 (219)
T ss_dssp -SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE-EEEEEEE
T ss_pred -CCcccccEEEECchHhhccCHHHHHHHHHHhCCC-CCEEEEE
Confidence 1136899999987654321134555556666676 4567665
No 282
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=26.07 E-value=27 Score=27.80 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=26.1
Q ss_pred cCcc--EEEECCCC--C--CHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 169 HAFS--VVVVDPPY--L--SKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 169 ~~fD--~Vv~DPPF--l--seec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+..+ +||+|.|. + ..+-...+...++.+++..+.-||++|=
T Consensus 120 ~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h 166 (235)
T 2w0m_A 120 LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQ 166 (235)
T ss_dssp HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC
T ss_pred hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4688 99999999 4 3333466667777776543334555543
No 283
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=26.00 E-value=1.5e+02 Score=25.65 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=51.3
Q ss_pred CCCeEEEEeChhHHH--HHHhhCCCCCceEEeec-------ccccccC---C-ccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACPTLYA--YLKKIRPEVSPKILEYD-------MRFEQYG---S-DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD-------~RF~~~g---~-~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
+..+|+=|||=+=.. .|.+..|+.+++.+|+. .++...| . +|+.-|+.++ +| ..||+|++.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~----~~~D~v~~~ 256 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP--LP----RKADAIILS 256 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC--CS----SCEEEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC--CC----CCccEEEEc
Confidence 467999999877443 34444666666766652 1232222 2 5777777654 33 249999887
Q ss_pred CCC--CC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 178 PPY--LS-KECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 178 PPF--ls-eec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
-.+ .. ++|.. +-..++.++++ +++++++
T Consensus 257 ~vl~~~~~~~~~~-~l~~~~~~L~p-gG~l~i~ 287 (360)
T 1tw3_A 257 FVLLNWPDHDAVR-ILTRCAEALEP-GGRILIH 287 (360)
T ss_dssp SCGGGSCHHHHHH-HHHHHHHTEEE-EEEEEEE
T ss_pred ccccCCCHHHHHH-HHHHHHHhcCC-CcEEEEE
Confidence 664 23 44433 33444455565 4577665
No 284
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=25.77 E-value=79 Score=25.65 Aligned_cols=108 Identities=15% Similarity=0.003 Sum_probs=60.2
Q ss_pred cChhHHHHHHHHHHh---hcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccccc---------CC-cccccc
Q 025067 92 YDAVTAETVAQEAVS---LCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY---------GS-DFAFYD 156 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~---~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~---------g~-~FvfYD 156 (258)
|.......+++.+.. ... ++.+|+=|||=+=... |.+. +.+++.+|++...-.. +. .|+.-|
T Consensus 18 ~~~~~~~~~~~~l~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d 94 (263)
T 2yqz_A 18 HPPEVAGQIATAMASAVHPKG-EEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQAD 94 (263)
T ss_dssp CCHHHHHHHHHHHHHHCCCSS-SCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESC
T ss_pred cChHHHHHHHHHHHHhhcCCC-CCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcc
Confidence 456667777777744 223 5789999998663332 3332 4578899988543211 11 455555
Q ss_pred CCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 157 YNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
... +| .-.++||+|++--.+-.-.-...+-..+..++++ ++.+++.
T Consensus 95 ~~~---~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~~~ 140 (263)
T 2yqz_A 95 ARA---IP-LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKP-GGALLEG 140 (263)
T ss_dssp TTS---CC-SCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEE-EEEEEEE
T ss_pred ccc---CC-CCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCC-CcEEEEE
Confidence 432 22 1136799998865443211134444555566666 4466654
No 285
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=25.49 E-value=87 Score=28.85 Aligned_cols=106 Identities=11% Similarity=0.199 Sum_probs=59.8
Q ss_pred ccccccChhHHHHHHHHHHhhcCCCCCeEEEE------eChhHHHHHHhh-CCCCCceEEe---ecc-------------
Q 025067 87 LSQFWYDAVTAETVAQEAVSLCSDSDSRVACI------ACPTLYAYLKKI-RPEVSPKILE---YDM------------- 143 (258)
Q Consensus 87 lSQFWYsd~Ta~~La~~l~~~a~~~~~~Iacl------stPSly~~lk~~-~~~~~~~LLE---yD~------------- 143 (258)
.+-|-|.+...+.|.+.+.+..+ ...+.+ ||-.+...|+.. .|+..+++.+ |+.
T Consensus 57 ~~g~~y~~~~~~~l~~~la~~~g---~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~ 133 (431)
T 3ht4_A 57 TTGYGYDDIGRDTLEKVYADVFG---AEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVG 133 (431)
T ss_dssp CCTTCCSCHHHHHHHHHHHHHTT---CSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSS
T ss_pred CCCCCCChhhHHHHHHHHHHHhC---CCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccc
Confidence 45688999998999998888754 222222 222333334332 3555666654 332
Q ss_pred cccccCCccccccCC-----CCCCchhhhccCccEEEECC----CCC---CHHHHHHHHHHHHH
Q 025067 144 RFEQYGSDFAFYDYN-----QPQDLPLELKHAFSVVVVDP----PYL---SKECLEKVSETVSF 195 (258)
Q Consensus 144 RF~~~g~~FvfYDyn-----~P~~lp~~lk~~fD~Vv~DP----PFl---seec~eK~A~Tir~ 195 (258)
-+..+|-++++++.+ .++.|.+.+.....+|++.+ |.. +.+-++.+++-++.
T Consensus 134 ~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~ 197 (431)
T 3ht4_A 134 SFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKE 197 (431)
T ss_dssp CSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHH
T ss_pred hHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHh
Confidence 122245567788774 33334444555567899986 554 45555655555544
No 286
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=25.34 E-value=2.3e+02 Score=26.70 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=51.6
Q ss_pred CCCeEEEEeChhHHHHHH--hhCCCCCceEEeeccc---------------ccccC---C--ccccc-cCCCCCCchhhh
Q 025067 111 SDSRVACIACPTLYAYLK--KIRPEVSPKILEYDMR---------------FEQYG---S--DFAFY-DYNQPQDLPLEL 167 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk--~~~~~~~~~LLEyD~R---------------F~~~g---~--~FvfY-Dyn~P~~lp~~l 167 (258)
++.+|+=|||=+=+..+. +..+..+++-+|++.. ...+| + +|+.= ++..+..++. .
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~-~ 320 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE-L 320 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH-H
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc-c
Confidence 578999999988776543 2234446888888753 22233 2 23322 2322222221 2
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.+.||+||+.......+....+.+ +...+++ +++|++.
T Consensus 321 ~~~FDvIvvn~~l~~~d~~~~L~e-l~r~LKp-GG~lVi~ 358 (433)
T 1u2z_A 321 IPQCDVILVNNFLFDEDLNKKVEK-ILQTAKV-GCKIISL 358 (433)
T ss_dssp GGGCSEEEECCTTCCHHHHHHHHH-HHTTCCT-TCEEEES
T ss_pred cCCCCEEEEeCccccccHHHHHHH-HHHhCCC-CeEEEEe
Confidence 367999999865555554443433 3334455 4566554
No 287
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=25.28 E-value=23 Score=29.04 Aligned_cols=89 Identities=16% Similarity=0.105 Sum_probs=51.1
Q ss_pred CCCeEEEEeChhHHHH--HHhh-CCCCCceEEeecccc--------ccc-C-C--ccccccCCCCCCchhhhccCccEEE
Q 025067 111 SDSRVACIACPTLYAY--LKKI-RPEVSPKILEYDMRF--------EQY-G-S--DFAFYDYNQPQDLPLELKHAFSVVV 175 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~-~~~~~~~LLEyD~RF--------~~~-g-~--~FvfYDyn~P~~lp~~lk~~fD~Vv 175 (258)
++.+|+=++|=+=... +.+. .|..+++.+|++... ... | . +|+.-|..+. .++ .++||+|+
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~~~---~~~~D~v~ 171 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-ELE---EAAYDGVA 171 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-CCC---TTCEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-CCC---CCCcCEEE
Confidence 5679999988653332 3333 456789999998543 222 2 1 3555554332 122 26799999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 176 VDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 176 ~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
+|||-.. . +-..+..++++ ++++++.+.
T Consensus 172 ~~~~~~~----~-~l~~~~~~L~~-gG~l~~~~~ 199 (258)
T 2pwy_A 172 LDLMEPW----K-VLEKAALALKP-DRFLVAYLP 199 (258)
T ss_dssp EESSCGG----G-GHHHHHHHEEE-EEEEEEEES
T ss_pred ECCcCHH----H-HHHHHHHhCCC-CCEEEEEeC
Confidence 9998432 2 23333444555 456666555
No 288
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=25.08 E-value=43 Score=23.89 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=26.8
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
...+|+||+|--....+.++ +...+|.........||++++...+ .+.+.+
T Consensus 48 ~~~~dlii~d~~l~~~~g~~-~~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~~ 98 (132)
T 3lte_A 48 TFEPAIMTLDLSMPKLDGLD-VIRSLRQNKVANQPKILVVSGLDKA-KLQQAV 98 (132)
T ss_dssp HTCCSEEEEESCBTTBCHHH-HHHHHHTTTCSSCCEEEEECCSCSH-HHHHHH
T ss_pred hcCCCEEEEecCCCCCCHHH-HHHHHHhcCccCCCeEEEEeCCChH-HHHHHH
Confidence 35689999997655544322 2233333221113467777765544 444554
No 289
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=25.07 E-value=1.7e+02 Score=24.33 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=56.1
Q ss_pred HHHHHHHhhcC-CCCCeEEEEeChhHHH--HHHhhCCCCCceEEeeccc--------ccccC---C-ccccccCCCCCCc
Q 025067 99 TVAQEAVSLCS-DSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMR--------FEQYG---S-DFAFYDYNQPQDL 163 (258)
Q Consensus 99 ~La~~l~~~a~-~~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~R--------F~~~g---~-~FvfYDyn~P~~l 163 (258)
.+.+.+++... .++.+|+=|||=+=.. .+.+.. +.+++.+|++.. +...| . +|+.-|+. ++
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~ 126 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE---QF 126 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG---GC
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh---hC
Confidence 34445555432 2567999999865332 233222 348899998743 32222 1 34444542 23
Q ss_pred hhhhccCccEEEECCCCCCH--HHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 164 PLELKHAFSVVVVDPPYLSK--ECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 164 p~~lk~~fD~Vv~DPPFlse--ec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
| ++||+|++--.+..- +-..++-..+..++++ ++++++.+
T Consensus 127 ~----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 168 (287)
T 1kpg_A 127 D----EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA-DGVMLLHT 168 (287)
T ss_dssp C----CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT-TCEEEEEE
T ss_pred C----CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 3 789999876444211 2245555666677777 55776654
No 290
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=24.60 E-value=81 Score=25.81 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=33.0
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--.-..+.++ +...+|... ...+||+.|+......+.+.+..-..+|.++
T Consensus 66 ~~~dlvllD~~lp~~~g~~-~~~~lr~~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~K 124 (250)
T 3r0j_A 66 TRPDAVILDVXMPGMDGFG-VLRRLRADG--IDAPALFLTARDSLQDKIAGLTLGGDDYVTK 124 (250)
T ss_dssp HCCSEEEEESCCSSSCHHH-HHHHHHHTT--CCCCEEEEECSTTHHHHHHHHTSTTCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHH-HHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHcCCcEEEeC
Confidence 5688999884333332222 223333321 1457888888777666666664444555444
No 291
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.44 E-value=80 Score=21.88 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=30.9
Q ss_pred cCccEEEECCCCC-CHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYL-SKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFl-seec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|--.. ..+.+ .+...++........+||+. +......+.+.+.....+|.+
T Consensus 48 ~~~dlvi~d~~~~~~~~g~-~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~ 107 (127)
T 2gkg_A 48 DRPDLVVLAVDLSAGQNGY-LICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVA 107 (127)
T ss_dssp HCCSEEEEESBCGGGCBHH-HHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEE
T ss_pred cCCCEEEEeCCCCCCCCHH-HHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchhee
Confidence 4588888886543 32222 23344444321123467777 655555566666444444444
No 292
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=24.26 E-value=42 Score=24.39 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=18.1
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCC-CCCcEEEechH
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARP-GDSKLLLLTGE 210 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~-~~~kiil~Tg~ 210 (258)
+.+|+||+|--....+.+ ..++.|.+. ...+||+.|+.
T Consensus 54 ~~~dlvi~d~~l~~~~g~----~~~~~l~~~~~~~~ii~~s~~ 92 (143)
T 2qv0_A 54 NKVDAIFLDINIPSLDGV----LLAQNISQFAHKPFIVFITAW 92 (143)
T ss_dssp CCCSEEEECSSCSSSCHH----HHHHHHTTSTTCCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCHH----HHHHHHHccCCCceEEEEeCC
Confidence 457888888433222211 122333332 13356777765
No 293
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=24.22 E-value=79 Score=26.03 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhcC-CCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccC--C--ccccccCCCCC
Q 025067 97 AETVAQEAVSLCS-DSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYG--S--DFAFYDYNQPQ 161 (258)
Q Consensus 97 a~~La~~l~~~a~-~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g--~--~FvfYDyn~P~ 161 (258)
...+++.+++... .++.+|+=|||=+=... +.+.. +.+++.+|++... ...| + +|+.-|+...
T Consensus 46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~- 123 (273)
T 3bus_A 46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL- 123 (273)
T ss_dssp HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-
Confidence 4455566655543 25789999998664332 33322 4689999987533 2222 1 4555665431
Q ss_pred CchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 162 DLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 162 ~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.++ .++||+|++--.+..-.-...+-..++.++++ ++++++.+
T Consensus 124 ~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~ 166 (273)
T 3bus_A 124 PFE---DASFDAVWALESLHHMPDRGRALREMARVLRP-GGTVAIAD 166 (273)
T ss_dssp CSC---TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred CCC---CCCccEEEEechhhhCCCHHHHHHHHHHHcCC-CeEEEEEE
Confidence 111 36899998866655321124455555666666 45666654
No 294
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=24.22 E-value=83 Score=21.98 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=27.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
+.+|+||+|--.-..+.++ +...++.. + ..++|+.|+......+.+.+
T Consensus 46 ~~~dlvi~D~~l~~~~g~~-~~~~l~~~--~-~~~ii~~s~~~~~~~~~~~~ 93 (123)
T 1xhf_A 46 YDINLVIMDINLPGKNGLL-LARELREQ--A-NVALMFLTGRDNEVDKILGL 93 (123)
T ss_dssp SCCSEEEECSSCSSSCHHH-HHHHHHHH--C-CCEEEEEESCCSHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHH-HHHHHHhC--C-CCcEEEEECCCChHHHHHHH
Confidence 5689999995443322222 33344433 2 35788888866665555555
No 295
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.90 E-value=1.1e+02 Score=26.86 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=55.9
Q ss_pred Cccccccccccc-ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeeccccccc-----C-C-
Q 025067 81 VSEDWRLSQFWY-DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQY-----G-S- 150 (258)
Q Consensus 81 ~~EDwqlSQFWY-sd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~~-----g-~- 150 (258)
+.-...+.|-|- +...++.|++.+.-. ++ +|+=|||=+=.-. |.+. ..+++.+|+|.++-.. + +
T Consensus 19 ~~~~k~~GQnfL~d~~i~~~Iv~~~~~~---~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~~~ 92 (271)
T 3fut_A 19 LFADKRFGQNFLVSEAHLRRIVEAARPF---TG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSGLP 92 (271)
T ss_dssp CCCSTTSSCCEECCHHHHHHHHHHHCCC---CS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTTSS
T ss_pred CCccccCCccccCCHHHHHHHHHhcCCC---CC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCCCC
Confidence 344667888555 666777777766322 45 8888887654433 4442 3689999999987643 1 1
Q ss_pred -ccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 151 -DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 151 -~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
+++.=|.-+ .+++. + ..+|+||..|||--
T Consensus 93 v~vi~~D~l~-~~~~~-~-~~~~~iv~NlPy~i 122 (271)
T 3fut_A 93 VRLVFQDALL-YPWEE-V-PQGSLLVANLPYHI 122 (271)
T ss_dssp EEEEESCGGG-SCGGG-S-CTTEEEEEEECSSC
T ss_pred EEEEECChhh-CChhh-c-cCccEEEecCcccc
Confidence 233323211 01111 1 25899999999964
No 296
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=23.30 E-value=1.6e+02 Score=25.73 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=52.8
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecc-------cccccC---C-ccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDM-------RFEQYG---S-DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~-------RF~~~g---~-~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
+..+|+=|||=+=... |.+..|+.+++.+|+.. ++...| . +|+.-|+.+| +| ..||+|++-
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~----~~~D~v~~~ 255 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP--LP----VTADVVLLS 255 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CS----CCEEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCc--CC----CCCCEEEEe
Confidence 5679999998775443 44446777888888621 222222 2 5777777654 33 239999987
Q ss_pred CCC--CC-HHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 178 PPY--LS-KECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 178 PPF--ls-eec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
..+ .. .+|. ++-..++.++++ +++++++.
T Consensus 256 ~vl~~~~~~~~~-~~l~~~~~~L~p-gG~l~i~e 287 (374)
T 1qzz_A 256 FVLLNWSDEDAL-TILRGCVRALEP-GGRLLVLD 287 (374)
T ss_dssp SCGGGSCHHHHH-HHHHHHHHHEEE-EEEEEEEE
T ss_pred ccccCCCHHHHH-HHHHHHHHhcCC-CcEEEEEe
Confidence 664 23 3443 344444555565 45676643
No 297
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=22.84 E-value=2.2e+02 Score=24.63 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=49.4
Q ss_pred ccChhHHHHHHHHHHhhcCCCCCeEEEEeC--hhHHHHHHhh--------CCCCCceEEee------------------c
Q 025067 91 WYDAVTAETVAQEAVSLCSDSDSRVACIAC--PTLYAYLKKI--------RPEVSPKILEY------------------D 142 (258)
Q Consensus 91 WYsd~Ta~~La~~l~~~a~~~~~~Iaclst--PSly~~lk~~--------~~~~~~~LLEy------------------D 142 (258)
.|..+....|++.+.+... ..+|.+.+. -.+..+++-. .++.++++++- .
T Consensus 74 ~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 151 (395)
T 3nx3_A 74 LYYNENIAAAAKNLAKASA--LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQ 151 (395)
T ss_dssp TSBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred ccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccc
Confidence 4667788888888887753 346655443 2244444321 12334444331 1
Q ss_pred ccccccCCccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 143 MRFEQYGSDFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 143 ~RF~~~g~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
..|...+.++.+++++.++.|.+.++....+|++.|++.+
T Consensus 152 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~ 191 (395)
T 3nx3_A 152 KPFKPLISGVKFAKYNDISSVEKLVNEKTCAIILESVQGE 191 (395)
T ss_dssp GGGCSCCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECT
T ss_pred cccCCCCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCC
Confidence 1122222356667776665565555555668999998754
No 298
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=22.80 E-value=35 Score=31.55 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=24.0
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCC
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGL 222 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~ 222 (258)
+.||+||+|=| ++.+|+|+|.-| ..+..++.+++.+
T Consensus 123 ~~yD~VIvDtp--------Ptg~tLrlL~lP----------~~l~~~l~~l~~~ 158 (374)
T 3igf_A 123 GKYDTIVYDGT--------GDAFTLRMLGLP----------ESLSWYVRRFRQL 158 (374)
T ss_dssp TCCSEEEEECC--------CSHHHHHHHTHH----------HHHHHHHHHTTSC
T ss_pred cCCCEEEEeCC--------CChHHhhhhhhh----------HHHHHHHHHHHHH
Confidence 56999999944 146778887766 3555556655433
No 299
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=22.75 E-value=2.2e+02 Score=22.82 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc-----cCC-ccccccCCCCCCchhhh
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ-----YGS-DFAFYDYNQPQDLPLEL 167 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~-----~g~-~FvfYDyn~P~~lp~~l 167 (258)
..+...+...+..... ++.+|+=|||=+=+..+.-...+.+++-+|++...-. ++. +|+.-|...+ +|-.+
T Consensus 32 ~~~~~l~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~--~~~~~ 108 (226)
T 3m33_A 32 PDPELTFDLWLSRLLT-PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGE--LPAGL 108 (226)
T ss_dssp SCTTHHHHHHHHHHCC-TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSS--CCTTC
T ss_pred CCHHHHHHHHHHhcCC-CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhc--cCCcC
Confidence 3343333333333333 6789999999876655432212458899999865322 222 5777776544 33223
Q ss_pred ccCccEEEECC
Q 025067 168 KHAFSVVVVDP 178 (258)
Q Consensus 168 k~~fD~Vv~DP 178 (258)
.++||+|++.+
T Consensus 109 ~~~fD~v~~~~ 119 (226)
T 3m33_A 109 GAPFGLIVSRR 119 (226)
T ss_dssp CCCEEEEEEES
T ss_pred CCCEEEEEeCC
Confidence 47899999874
No 300
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=21.88 E-value=85 Score=22.54 Aligned_cols=55 Identities=5% Similarity=0.028 Sum_probs=31.5
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
.+.+|+|| -|..-+.+ +...++.. . ...+||++|+......+.+.+..-..+|.+
T Consensus 60 ~~~~dlvi-~~~~~g~~----~~~~l~~~-~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 114 (137)
T 2pln_A 60 IRNYDLVM-VSDKNALS----FVSRIKEK-H-SSIVVLVSSDNPTSEEEVHAFEQGADDYIA 114 (137)
T ss_dssp HSCCSEEE-ECSTTHHH----HHHHHHHH-S-TTSEEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred cCCCCEEE-EcCccHHH----HHHHHHhc-C-CCccEEEEeCCCCHHHHHHHHHcCCceeee
Confidence 35689998 44333333 33444444 2 135899999877666677776333444443
No 301
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=21.80 E-value=64 Score=26.52 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=56.1
Q ss_pred cccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHH--HHHhhCCCCCceEEeecccc--------cccC--C-cccc
Q 025067 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYA--YLKKIRPEVSPKILEYDMRF--------EQYG--S-DFAF 154 (258)
Q Consensus 88 SQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~--~lk~~~~~~~~~LLEyD~RF--------~~~g--~-~Fvf 154 (258)
|.-.++......|++.+... ++.+|+=|||=+=.. .|.+.. .+++.+|++... ...| . .|+.
T Consensus 17 s~~~~~~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~ 91 (260)
T 1vl5_A 17 SQIHAKGSDLAKLMQIAALK---GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ 91 (260)
T ss_dssp ------CCCHHHHHHHHTCC---SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CccccCHHHHHHHHHHhCCC---CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEE
Confidence 33444555566676665332 568999999976443 333333 378898987532 2222 1 4565
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCC-HHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLS-KECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFls-eec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
-|.... .++ .++||+|++---+-. .+ ...+-..++.++++ ++.++++
T Consensus 92 ~d~~~l-~~~---~~~fD~V~~~~~l~~~~d-~~~~l~~~~r~Lkp-gG~l~~~ 139 (260)
T 1vl5_A 92 GDAEQM-PFT---DERFHIVTCRIAAHHFPN-PASFVSEAYRVLKK-GGQLLLV 139 (260)
T ss_dssp CCC-CC-CSC---TTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEE-EEEEEEE
T ss_pred ecHHhC-CCC---CCCEEEEEEhhhhHhcCC-HHHHHHHHHHHcCC-CCEEEEE
Confidence 565431 122 368998887633211 11 23444445556666 4566664
No 302
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=21.60 E-value=62 Score=25.79 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=23.1
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 171 FSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 171 fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
+-+||..|||+++-+.+-+--+.-.+.+.
T Consensus 15 ~~ivv~~~Pyg~~~a~~Al~~A~aala~g 43 (140)
T 2d1p_A 15 FAIVVTGPAYGTQQASSAFQFAQALIADG 43 (140)
T ss_dssp EEEEECSCSSSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHHCC
Confidence 55999999999999988776666666664
No 303
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.11 E-value=83 Score=22.91 Aligned_cols=58 Identities=10% Similarity=0.073 Sum_probs=31.0
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|--.-..+-++ +...++... + ..+||+.|+....+.+.+.+..-..+|.+
T Consensus 47 ~~~dlvllD~~l~~~~g~~-l~~~l~~~~-~-~~~ii~ls~~~~~~~~~~~~~~ga~~~l~ 104 (137)
T 3cfy_A 47 SKPQLIILDLKLPDMSGED-VLDWINQND-I-PTSVIIATAHGSVDLAVNLIQKGAEDFLE 104 (137)
T ss_dssp HCCSEEEECSBCSSSBHHH-HHHHHHHTT-C-CCEEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEecCCCCCCHHH-HHHHHHhcC-C-CCCEEEEEecCcHHHHHHHHHCCccEEEe
Confidence 5689999995332222221 223333321 2 35788888876666666666333344443
No 304
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=20.64 E-value=4.2e+02 Score=23.24 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=50.9
Q ss_pred CCCeEEEEeChhHHHH--HHhhCCCCCceEEeecc-------cccccC--C--ccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACPTLYAY--LKKIRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~-------RF~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
++.+|+=|||=+=... +.+ .+..+++.+|++. +++..| + .|+.=|..+. .+| .++||+||++
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~-~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~---~~~~D~Ivs~ 138 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-HLP---VEKVDVIISE 138 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCS---CSCEEEEEEC
T ss_pred CCCEEEEeeccCcHHHHHHHH-cCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCC---CCcEEEEEEc
Confidence 5689999999873333 222 2335799999984 122111 1 3444444321 122 2679999999
Q ss_pred C-CCC--CHHHHHHHHHHHHHhcCCCCCcEE
Q 025067 178 P-PYL--SKECLEKVSETVSFLARPGDSKLL 205 (258)
Q Consensus 178 P-PFl--seec~eK~A~Tir~L~k~~~~kii 205 (258)
+ +|. .+.-+..+-..++.++++ ++.+|
T Consensus 139 ~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~li 168 (340)
T 2fyt_A 139 WMGYFLLFESMLDSVLYAKNKYLAK-GGSVY 168 (340)
T ss_dssp CCBTTBTTTCHHHHHHHHHHHHEEE-EEEEE
T ss_pred CchhhccCHHHHHHHHHHHHhhcCC-CcEEE
Confidence 8 433 344455666666677776 34444
No 305
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=20.57 E-value=24 Score=31.58 Aligned_cols=85 Identities=11% Similarity=0.015 Sum_probs=52.0
Q ss_pred CCCeEEEEeChhHHHHHHh-hCCCCCceEEeecc-------cccccC--C--ccccccCCCCCCchhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAYLKK-IRPEVSPKILEYDM-------RFEQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~-~~~~~~~~LLEyD~-------RF~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
++.+|+=|||=+=...+.- ..+..+++-+|.+. +....| + .|+.=|..+. .+| .++||+||+++
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~---~~~fD~Iis~~ 141 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELP---VEKVDIIISEW 141 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCS---SSCEEEEEECC
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCC---CCceEEEEEcc
Confidence 5679999999775444321 13445889999983 122122 1 3444444332 122 36899999998
Q ss_pred C---CCCHHHHHHHHHHHHHhcCC
Q 025067 179 P---YLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 179 P---Flseec~eK~A~Tir~L~k~ 199 (258)
+ +..++.+..+...+..++++
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~Lkp 165 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAP 165 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEE
T ss_pred ccccccCchhHHHHHHHHHHhCCC
Confidence 6 33456677777777777776
No 306
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=20.35 E-value=68 Score=29.15 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=49.2
Q ss_pred cChhHHHHHHHHHHhhcCCCCCeEEEEeChh--HHHHHHhh-CCCCCceEEee--ccc---c----cccCCccccccCCC
Q 025067 92 YDAVTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKI-RPEVSPKILEY--DMR---F----EQYGSDFAFYDYNQ 159 (258)
Q Consensus 92 Ysd~Ta~~La~~l~~~a~~~~~~IaclstPS--ly~~lk~~-~~~~~~~LLEy--D~R---F----~~~g~~FvfYDyn~ 159 (258)
|.+.|...|.+.+.+..+ . ..+.++++=+ +...++.. .++..+++.+. -.- + ..+|-+.+++|++.
T Consensus 78 ~~~p~~~~l~~~la~~~g-~-~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d 155 (414)
T 3ndn_A 78 YGNPTVSVFEERLRLIEG-A-PAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDD 155 (414)
T ss_dssp TCCHHHHHHHHHHHHHHT-C-SEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTC
T ss_pred CCChHHHHHHHHHHHHHC-C-CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCC
Confidence 457889999999888754 2 3443333222 22233332 34555555441 111 1 12455677888876
Q ss_pred CCCchhhhccCccEEEECCCC
Q 025067 160 PQDLPLELKHAFSVVVVDPPY 180 (258)
Q Consensus 160 P~~lp~~lk~~fD~Vv~DPPF 180 (258)
++.|.+.++....+|++.+|-
T Consensus 156 ~~~l~~ai~~~t~~v~le~p~ 176 (414)
T 3ndn_A 156 LSQWERALSVPTQAVFFETPS 176 (414)
T ss_dssp HHHHHHHTSSCCSEEEEESSC
T ss_pred HHHHHHhcCCCCeEEEEECCC
Confidence 666666666556777776664
No 307
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=20.28 E-value=95 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=17.6
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhc
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLA 197 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~ 197 (258)
+.-.+|||||++..++ .+++...++...
T Consensus 82 ~~~~~ilIDtg~~~~~-~~~l~~~i~~~~ 109 (270)
T 4eyb_A 82 DGGRVLVVDTAWTDDQ-TAQILNWIKQEI 109 (270)
T ss_dssp ETTEEEEESCCSSHHH-HHHHHHHHHHHT
T ss_pred ECCEEEEEeCCCCHHH-HHHHHHHHHHhc
Confidence 3345999999986554 355555555543
Done!