Query 025067
Match_columns 258
No_of_seqs 168 out of 244
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 03:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025067.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025067hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wy7a1 c.66.1.32 (A:4-204) Hy 96.8 0.0027 2E-07 52.1 9.4 96 80-182 14-121 (201)
2 d2b3ta1 c.66.1.30 (A:2-275) N5 95.4 0.022 1.6E-06 49.2 8.1 178 44-231 45-263 (274)
3 d1ne2a_ c.66.1.32 (A:) Hypothe 95.4 0.014 1E-06 48.1 6.6 93 84-183 21-120 (197)
4 d1nv8a_ c.66.1.30 (A:) N5-glut 95.0 0.069 5E-06 45.9 10.2 169 44-220 46-248 (271)
5 d2dpma_ c.66.1.28 (A:) DNA met 94.6 0.038 2.8E-06 45.8 7.2 73 170-246 178-274 (275)
6 d1dusa_ c.66.1.4 (A:) Hypothet 94.4 0.058 4.2E-06 42.6 7.7 91 111-207 52-156 (194)
7 d1ws6a1 c.66.1.46 (A:15-185) M 91.7 0.048 3.5E-06 43.1 3.1 85 98-183 29-123 (171)
8 d2esra1 c.66.1.46 (A:28-179) P 91.3 0.063 4.6E-06 41.3 3.3 82 111-197 14-106 (152)
9 d1wxxa2 c.66.1.51 (A:65-382) H 90.9 0.075 5.5E-06 46.1 3.8 94 111-208 145-261 (318)
10 d2fhpa1 c.66.1.46 (A:1-182) Pu 90.6 0.028 2E-06 45.1 0.6 16 169-184 112-127 (182)
11 d2igta1 c.66.1.51 (A:1-309) Pu 90.2 0.11 8.1E-06 45.6 4.3 127 89-220 111-270 (309)
12 d2ifta1 c.66.1.46 (A:11-193) P 90.0 0.063 4.6E-06 42.7 2.3 15 169-183 114-128 (183)
13 d2b78a2 c.66.1.51 (A:69-385) H 89.1 0.092 6.7E-06 45.7 2.8 109 91-208 127-263 (317)
14 d1eg2a_ c.66.1.11 (A:) m.RsrI 87.6 0.16 1.1E-05 41.1 3.1 14 169-182 22-35 (279)
15 d2as0a2 c.66.1.51 (A:73-396) H 86.3 0.18 1.3E-05 43.5 3.0 73 106-182 141-229 (324)
16 d1g60a_ c.66.1.11 (A:) Methylt 85.9 0.36 2.6E-05 38.3 4.4 13 169-181 22-34 (256)
17 d2fpoa1 c.66.1.46 (A:10-192) M 85.3 0.22 1.6E-05 39.4 2.8 22 168-190 109-130 (183)
18 d1booa_ c.66.1.11 (A:) m.PvuII 84.0 0.19 1.4E-05 41.0 1.9 15 168-182 29-43 (320)
19 d1g8aa_ c.66.1.3 (A:) Fibrilla 83.4 1.7 0.00012 35.5 7.7 108 97-208 55-178 (227)
20 d1ny5a1 c.23.1.1 (A:1-137) Tra 79.8 0.86 6.3E-05 33.9 4.2 56 169-230 43-101 (137)
21 d2nxca1 c.66.1.39 (A:1-254) Pr 78.2 2.5 0.00018 35.1 7.0 116 94-220 104-231 (254)
22 d1uwva2 c.66.1.40 (A:75-432) r 74.2 4.3 0.00031 34.1 7.6 129 94-230 194-345 (358)
23 d2ih2a1 c.66.1.27 (A:21-243) D 74.1 2.7 0.00019 32.2 5.8 79 99-182 6-90 (223)
24 d1yf3a1 c.66.1.28 (A:1-259) DN 73.8 1.1 8.3E-05 35.9 3.5 61 170-231 164-239 (259)
25 d1zesa1 c.23.1.1 (A:3-123) Pho 70.3 2 0.00015 31.0 3.9 57 169-229 43-102 (121)
26 d1m6ya2 c.66.1.23 (A:2-114,A:2 68.2 2.5 0.00018 33.7 4.4 120 99-220 10-154 (192)
27 d2h00a1 c.66.1.54 (A:5-254) Me 67.3 1.6 0.00012 35.9 3.2 72 112-183 62-149 (250)
28 d2r25b1 c.23.1.1 (B:1087-1214) 66.7 3.7 0.00027 30.1 4.8 57 169-230 50-109 (128)
29 d1w25a1 c.23.1.1 (A:2-140) Res 66.3 2.6 0.00019 31.2 3.9 59 169-230 44-104 (139)
30 d2oo3a1 c.66.1.59 (A:9-279) Un 62.2 2.6 0.00019 36.1 3.5 30 171-200 151-180 (271)
31 d1s8na_ c.23.1.1 (A:) Probable 61.8 3.4 0.00025 31.8 3.9 55 169-230 47-104 (190)
32 d1kgsa2 c.23.1.1 (A:2-123) Pho 60.3 7 0.00051 27.9 5.3 56 169-230 44-102 (122)
33 d1dcfa_ c.23.1.2 (A:) Receiver 57.7 5.3 0.00039 29.2 4.2 57 168-228 48-110 (134)
34 d1xhfa1 c.23.1.1 (A:2-122) Aer 55.3 5.1 0.00037 28.8 3.7 59 168-230 44-102 (121)
35 d1nt2a_ c.66.1.3 (A:) Fibrilla 54.9 18 0.0013 28.4 7.3 108 96-207 38-159 (209)
36 d2f8la1 c.66.1.45 (A:2-329) Hy 54.3 2 0.00015 35.8 1.4 97 81-182 86-200 (328)
37 d1u0sy_ c.23.1.1 (Y:) CheY pro 53.7 5.8 0.00042 28.4 3.8 59 169-230 45-103 (118)
38 d1krwa_ c.23.1.1 (A:) NTRC rec 52.4 5.8 0.00042 28.5 3.6 56 169-230 46-104 (123)
39 d2dula1 c.66.1.58 (A:3-377) N( 50.7 3.8 0.00028 36.0 2.7 42 168-215 127-168 (375)
40 d1dbwa_ c.23.1.1 (A:) Transcri 49.8 10 0.00076 27.1 4.7 56 169-230 46-104 (123)
41 d1jbea_ c.23.1.1 (A:) CheY pro 49.2 7.2 0.00052 28.1 3.7 30 201-230 79-108 (128)
42 d2oyra1 c.66.1.55 (A:1-250) Hy 48.8 3.2 0.00023 34.8 1.8 19 111-129 110-128 (250)
43 d2a9pa1 c.23.1.1 (A:2-118) DNA 46.2 9.5 0.0007 27.0 3.9 58 169-230 43-100 (117)
44 d1i3ca_ c.23.1.1 (A:) Response 44.6 14 0.00099 27.2 4.7 60 170-230 56-115 (144)
45 d2bzga1 c.66.1.36 (A:17-245) T 44.4 9.4 0.00069 29.7 4.0 122 83-208 15-168 (229)
46 d1p6qa_ c.23.1.1 (A:) CheY pro 43.0 6.3 0.00046 28.5 2.4 59 169-228 50-108 (129)
47 d1zx0a1 c.66.1.16 (A:8-236) Gu 42.7 15 0.0011 28.7 5.0 103 96-207 42-162 (229)
48 d1k68a_ c.23.1.1 (A:) Response 42.7 14 0.001 27.0 4.5 58 169-230 54-114 (140)
49 d1susa1 c.66.1.1 (A:21-247) Ca 41.5 57 0.0041 25.9 8.6 101 93-199 44-162 (227)
50 d1z63a1 c.37.1.19 (A:432-661) 39.8 7.4 0.00054 30.4 2.6 66 44-130 12-79 (230)
51 d2gh1a1 c.66.1.49 (A:13-293) M 39.7 11 0.00078 30.6 3.7 114 88-209 6-132 (281)
52 d1dz3a_ c.23.1.1 (A:) Sporulat 39.6 7.9 0.00057 27.7 2.5 56 170-230 47-105 (123)
53 d2ar0a1 c.66.1.45 (A:6-529) M. 38.5 5.8 0.00042 35.7 1.9 15 169-183 255-269 (524)
54 d1iy9a_ c.66.1.17 (A:) Spermid 38.4 10 0.00074 31.5 3.4 96 80-180 46-158 (274)
55 d2okca1 c.66.1.45 (A:9-433) Ty 38.3 5.9 0.00043 34.5 1.9 16 168-183 242-257 (425)
56 d1ys7a2 c.23.1.1 (A:7-127) Tra 38.0 5.2 0.00038 28.8 1.2 56 169-230 44-102 (121)
57 d1qkka_ c.23.1.1 (A:) Transcri 37.4 25 0.0018 25.4 5.2 56 169-230 43-101 (140)
58 d1qo0d_ c.23.1.3 (D:) Positive 36.6 14 0.001 27.5 3.7 57 168-230 49-107 (189)
59 d1w25a2 c.23.1.1 (A:141-293) R 35.2 13 0.00097 27.6 3.3 58 168-229 53-113 (153)
60 d1a04a2 c.23.1.1 (A:5-142) Nit 34.8 15 0.0011 26.4 3.6 56 169-230 47-105 (138)
61 d1inla_ c.66.1.17 (A:) Spermid 34.6 7.7 0.00056 32.9 2.0 60 81-145 61-125 (295)
62 d2frna1 c.66.1.47 (A:19-278) H 33.2 6.1 0.00045 32.6 1.1 99 89-198 88-199 (260)
63 d1x8ha_ d.157.1.1 (A:) Zn meta 33.0 18 0.0013 27.6 3.8 29 169-198 30-58 (228)
64 d2o07a1 c.66.1.17 (A:16-300) S 32.6 31 0.0023 28.6 5.6 44 99-143 67-112 (285)
65 d2ayxa1 c.23.1.1 (A:817-949) S 32.6 12 0.00087 27.1 2.5 55 169-229 51-108 (133)
66 d1kjqa2 c.30.1.1 (A:2-112) Gly 32.3 63 0.0046 22.8 6.7 79 111-189 10-93 (111)
67 d1mjfa_ c.66.1.17 (A:) Putativ 30.5 26 0.0019 28.8 4.7 116 81-199 44-182 (276)
68 d1peya_ c.23.1.1 (A:) Sporulat 29.7 24 0.0017 24.8 3.8 55 169-229 44-101 (119)
69 d1g8sa_ c.66.1.3 (A:) Fibrilla 29.6 53 0.0039 25.9 6.4 106 98-207 57-177 (230)
70 d1uira_ c.66.1.17 (A:) Spermid 29.6 14 0.00099 31.3 2.7 101 98-200 65-188 (312)
71 d1g6q1_ c.66.1.6 (1:) Arginine 28.0 75 0.0054 25.8 7.3 85 111-199 38-137 (328)
72 d1ve3a1 c.66.1.43 (A:2-227) Hy 27.9 81 0.0059 22.9 6.9 104 97-209 24-142 (226)
73 d2b9ea1 c.66.1.38 (A:133-425) 26.9 11 0.00077 31.5 1.5 133 88-228 74-250 (293)
74 d1zgza1 c.23.1.1 (A:2-121) Tor 25.8 23 0.0017 24.7 3.1 58 169-230 44-101 (120)
75 d1jx7a_ c.114.1.1 (A:) Hypothe 24.6 37 0.0027 23.7 4.0 29 171-199 4-32 (117)
76 d1gsaa1 c.30.1.3 (A:1-122) Pro 24.5 14 0.001 27.1 1.7 28 153-183 65-94 (122)
77 d1dl5a1 c.66.1.7 (A:1-213) Pro 24.5 24 0.0017 27.5 3.2 100 99-209 63-176 (213)
78 d1k66a_ c.23.1.1 (A:) Response 24.2 22 0.0016 26.1 2.7 57 170-230 62-121 (149)
79 d1m2xa_ d.157.1.1 (A:) Zn meta 23.3 33 0.0024 25.5 3.7 28 169-197 34-61 (219)
80 d1sqga2 c.66.1.38 (A:145-428) 23.3 12 0.0009 30.9 1.2 95 85-184 79-185 (284)
81 d1mb3a_ c.23.1.1 (A:) Cell div 22.8 26 0.0019 24.5 2.9 48 169-220 44-94 (123)
82 d2b2ca1 c.66.1.17 (A:3-314) Sp 22.5 26 0.0019 29.8 3.2 63 81-145 78-142 (312)
83 d2fiaa1 d.108.1.1 (A:1-157) Pr 21.6 42 0.0031 23.5 3.9 73 171-243 78-153 (157)
84 d1ixka_ c.66.1.38 (A:) Hypothe 21.4 16 0.0012 30.7 1.6 54 166-220 181-260 (313)
85 d2pl1a1 c.23.1.1 (A:1-119) Pho 21.2 47 0.0034 23.1 4.0 56 169-230 43-101 (119)
86 d1o9ga_ c.66.1.29 (A:) rRNA me 20.6 13 0.00094 30.8 0.8 15 169-183 166-180 (249)
87 d1p2fa2 c.23.1.1 (A:1-120) Res 20.3 39 0.0029 23.6 3.4 59 169-230 42-100 (120)
No 1
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=96.83 E-value=0.0027 Score=52.09 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=63.2
Q ss_pred cCc-ccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccc--------cccC
Q 025067 80 LVS-EDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRF--------EQYG 149 (258)
Q Consensus 80 ~~~-EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF--------~~~g 149 (258)
.|+ -.|.|.||-=+.+.+..++..+....+-.+.+|+=+||=|=-..+.-. .+..+++.+|+|.+- ..++
T Consensus 14 ~f~~~~~~l~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~ 93 (201)
T d1wy7a1 14 GFKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK 93 (201)
T ss_dssp CCSSCCGGGTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT
T ss_pred CCCCCCcccccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC
Confidence 444 478899987777777777765554433257899999988765554322 233589999999652 2233
Q ss_pred C--ccccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 150 S--DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 150 ~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
. +|+..|.. .+..+||+||+||||+.
T Consensus 94 ~~~~~~~~d~~-------~~~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 94 GKFKVFIGDVS-------EFNSRVDIVIMNPPFGS 121 (201)
T ss_dssp TSEEEEESCGG-------GCCCCCSEEEECCCCSS
T ss_pred CCceEEECchh-------hhCCcCcEEEEcCcccc
Confidence 2 34444432 23568999999999975
No 2
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}
Probab=95.39 E-value=0.022 Score=49.24 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhH
Q 025067 44 MLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTL 123 (258)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSl 123 (258)
.||.+.+..+.+....|.+++---+--++..|.++.-....--| ==-.+| +.|++.++........+|+=|||=|-
T Consensus 45 ~~~~~~~~~~~~~~~rr~~g~PlqYI~G~~~F~~~~~~v~~~Vl---IPRpeT-E~lv~~~l~~~~~~~~~vlDlGtGSG 120 (274)
T d2b3ta1 45 QLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATL---IPRPDT-ECLVEQALARLPEQPCRILDLGTGTG 120 (274)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECCTTSC---CCCTTH-HHHHHHHHHHSCSSCCEEEEETCTTS
T ss_pred CCCHHHHHHHHHHHHHHhcCcChhhhcCcEEEeeeEEEEecccc---ccccch-hhhhhhHhhhhcccccceeeeehhhh
Confidence 68999999999999888766311010011111111000000000 000233 34555554443325678998998887
Q ss_pred HHHH--HhhCCCCCceEEeeccccc--------ccC--C-ccccccCCCCCCchhhhccCccEEEECCCCCCHH------
Q 025067 124 YAYL--KKIRPEVSPKILEYDMRFE--------QYG--S-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE------ 184 (258)
Q Consensus 124 y~~l--k~~~~~~~~~LLEyD~RF~--------~~g--~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee------ 184 (258)
...| .+..|..+++..|+..+-- .++ . +|+.=|+-.|. + .++||+||+.|||...+
T Consensus 121 ~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~--~---~~~fDlIvsNPPYi~~~~~~~~~ 195 (274)
T d2b3ta1 121 AIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL--A---GQQFAMIVSNPPYIDEQDPHLQQ 195 (274)
T ss_dssp HHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG--T---TCCEEEEEECCCCBCTTCHHHHS
T ss_pred HHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc--C---CCceeEEEecchhhhhhhhcccc
Confidence 6665 3457888899999874321 122 1 56666654432 1 25899999999998642
Q ss_pred -------------------HHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh---CCcccceeecC
Q 025067 185 -------------------CLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL---GLRPCGFRPQH 231 (258)
Q Consensus 185 -------------------c~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll---~~~~~~F~P~h 231 (258)
+..++..-+..++++ ++.+++-.|....+.+.+++ |++........
T Consensus 196 ~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~-~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl 263 (274)
T d2b3ta1 196 GDVRFEPLTALVAADSGMADIVHIIEQSRNALVS-GGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY 263 (274)
T ss_dssp SGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE-EEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT
T ss_pred cccccchhhhcccccccchHHHHHHHHHHHhcCC-CCEEEEEECchHHHHHHHHHHHCCCCeEEEEECC
Confidence 334444444444444 45788888877666666665 66655544443
No 3
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=95.36 E-value=0.014 Score=48.14 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=58.8
Q ss_pred cccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeeccccccc-----CC-cccccc
Q 025067 84 DWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY-----GS-DFAFYD 156 (258)
Q Consensus 84 DwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~~-----g~-~FvfYD 156 (258)
+-.|.||-=..+-+..++..+....+-++++|+=+||=|=...+... ....+++..|+|..--.. .. +|+.=|
T Consensus 21 ~~~leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D 100 (197)
T d1ne2a_ 21 KNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD 100 (197)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC
T ss_pred CcccccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEe
Confidence 44599999999989888877766644357899999998876554322 223479999999654321 11 455555
Q ss_pred CCCCCCchhhhccCccEEEECCCCCCH
Q 025067 157 YNQPQDLPLELKHAFSVVVVDPPYLSK 183 (258)
Q Consensus 157 yn~P~~lp~~lk~~fD~Vv~DPPFlse 183 (258)
.. .+.++||+||+||||++.
T Consensus 101 ~~-------~l~~~fD~Vi~NPPfg~~ 120 (197)
T d1ne2a_ 101 VS-------EISGKYDTWIMNPPFGSV 120 (197)
T ss_dssp GG-------GCCCCEEEEEECCCC---
T ss_pred hh-------hcCCcceEEEeCcccchh
Confidence 42 345789999999999853
No 4
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}
Probab=95.00 E-value=0.069 Score=45.89 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=89.7
Q ss_pred CCcHHHHHHHHHHHHHHHHhhHhhhcccccCCcccccCcccccccccccChhHHHHHHHHHHhhcC-CCCCeEEEEeChh
Q 025067 44 MLSSQALAALQEFLSEQNQTSETAQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCS-DSDSRVACIACPT 122 (258)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~l~~~~~~~~~~~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~-~~~~~IaclstPS 122 (258)
.||.+-++.++++...|.+++---+--+...|.+.+-....--|= =-.+| +.|++.+++... .+..+|+.+||=|
T Consensus 46 ~l~~~~~~~~~~~i~rR~~~~Pl~YI~g~~~F~~~~f~v~~~vlI---PRpeT-E~lv~~~~~~~~~~~~~~vld~g~Gs 121 (271)
T d1nv8a_ 46 GVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFV---PRPET-EELVELALELIRKYGIKTVADIGTGS 121 (271)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCC---CCTTH-HHHHHHHHHHHHHHTCCEEEEESCTT
T ss_pred CCCHHHHHHHHHHHHHhhCCCChhhhcCcEEEeeeEEEEecCccC---chhhh-hhhhhhhhhhhccccccEEEEeeeee
Confidence 599999999999999887663110000111111110000000000 00122 345554444321 0446888898887
Q ss_pred HHHHHHh-hCCCCCceEEeecc-----------cccccCC-ccccccCCCCCCchhhhccCccEEEECCCCCCHHHH---
Q 025067 123 LYAYLKK-IRPEVSPKILEYDM-----------RFEQYGS-DFAFYDYNQPQDLPLELKHAFSVVVVDPPYLSKECL--- 186 (258)
Q Consensus 123 ly~~lk~-~~~~~~~~LLEyD~-----------RF~~~g~-~FvfYDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~--- 186 (258)
--..+-- ..|+.+++..|++. |+..-.. .+..-|+..|. ....++||+||..|||+..+-.
T Consensus 122 G~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~---~~~~~~fDlIVsNPPYI~~~~~l~~ 198 (271)
T d1nv8a_ 122 GAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---KEKFASIEMILSNPPYVKSSAHLPK 198 (271)
T ss_dssp SHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTTCCEEEECCCCBCGGGSCTT
T ss_pred ehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc---ccccCcccEEEEcccccCcccccce
Confidence 6554332 25777899999883 2222111 22333443331 2234789999999999876421
Q ss_pred -----------------HHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 187 -----------------EKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 187 -----------------eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
.-+-.-++.++++ ++.+++=.|+...+.+.+++
T Consensus 199 ~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~-~G~l~~Eig~~Q~~~v~~l~ 248 (271)
T d1nv8a_ 199 DVLFEPPEALFGGEDGLDFYREFFGRYDTS-GKIVLMEIGEDQVEELKKIV 248 (271)
T ss_dssp SCCCSCHHHHBCTTTSCHHHHHHHHHCCCT-TCEEEEECCTTCHHHHTTTS
T ss_pred eeeeccccccccccchHHHHHHHHHHhcCC-CCEEEEEECHHHHHHHHHHH
Confidence 1111223445555 45677778888888787776
No 5
>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]}
Probab=94.58 E-value=0.038 Score=45.77 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=48.7
Q ss_pred CccEEEECCCCC----------------CHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh-CCcccceeecCC
Q 025067 170 AFSVVVVDPPYL----------------SKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL-GLRPCGFRPQHS 232 (258)
Q Consensus 170 ~fD~Vv~DPPFl----------------seec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll-~~~~~~F~P~h~ 232 (258)
+-|+|-+||||. +.+-..+++..++.|.+. +.|+|++. ...+.+.+++ +.++..+...+.
T Consensus 178 ~~dfvYlDPPY~~~~~~~~~~~Y~~~~f~~~dh~~l~~~~~~l~~~-~~k~ilSy--~~~~~ir~ly~~~~~~~~~~~~~ 254 (275)
T d2dpma_ 178 TGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDT-GAYVMLSN--SSSALVEELYKDFNIHYVEATRT 254 (275)
T ss_dssp TTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTT-TCEEEEEE--ESCHHHHHHTTTSEEEEEC----
T ss_pred cCcEEEecCCCCCcccccCcccccccCCcHHHHHHHHHHHHHHHhc-CCeEEEEe--CCCHHHHHHHhCCceEEEEEEEE
Confidence 467999999995 234567888899999886 55777765 3446688888 665555444432
Q ss_pred -------CCCCCceeeeeccC
Q 025067 233 -------SKLGNEFRLFTNYG 246 (258)
Q Consensus 233 -------n~L~Nef~cytNye 246 (258)
++-..|+ +.+||+
T Consensus 255 ~~~~~~~~~k~~El-lI~NY~ 274 (275)
T d2dpma_ 255 NGAKSSSRGKISEI-IVTNYE 274 (275)
T ss_dssp --------CCCCEE-EEESCC
T ss_pred ecccCCCCCceeEE-EEEcCC
Confidence 2234686 889996
No 6
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=94.43 E-value=0.058 Score=42.65 Aligned_cols=91 Identities=13% Similarity=0.235 Sum_probs=59.0
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeeccc--------ccccC---C--ccccccCCCCCCchhhhccCccEEEEC
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMR--------FEQYG---S--DFAFYDYNQPQDLPLELKHAFSVVVVD 177 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~R--------F~~~g---~--~FvfYDyn~P~~lp~~lk~~fD~Vv~D 177 (258)
++.+|+=|||=+=+..+.-.....+++..|+|.+ ++..+ . +|+.-|..++ ++ .++||+||++
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~--~~---~~~fD~Ii~~ 126 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--VK---DRKYNKIITN 126 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--CT---TSCEEEEEEC
T ss_pred CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh--hc---cCCceEEEEc
Confidence 6789999999887776543222358999999954 32221 1 3444454332 22 3679999999
Q ss_pred CCCC-CHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 178 PPYL-SKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 178 PPFl-seec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
|||- +.+-++++.+.+..++++ ++++++.
T Consensus 127 ~p~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 156 (194)
T d1dusa_ 127 PPIRAGKEVLHRIIEEGKELLKD-NGEIWVV 156 (194)
T ss_dssp CCSTTCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred ccEEecchhhhhHHHHHHHhcCc-CcEEEEE
Confidence 9975 465567777777777777 4566553
No 7
>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}
Probab=91.74 E-value=0.048 Score=43.08 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccccC-CccccccCCCCC---C----ch--hhh
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYG-SDFAFYDYNQPQ---D----LP--LEL 167 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~g-~~FvfYDyn~P~---~----lp--~~l 167 (258)
+.|.+.+..... .+.+|+=++|=|=...|.....+.+++..|.|.+--..- .++..++.+.-. . ++ ...
T Consensus 29 e~lf~~l~~~~~-~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (171)
T d1ws6a1 29 KALFDYLRLRYP-RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQ 107 (171)
T ss_dssp HHHHHHHHHHCT-TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHT
T ss_pred HHHHHHhhcccc-CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhccccccccc
Confidence 345555554433 567888887776444443322245788899997654321 122222221100 0 11 111
Q ss_pred ccCccEEEECCCCCCH
Q 025067 168 KHAFSVVVVDPPYLSK 183 (258)
Q Consensus 168 k~~fD~Vv~DPPFlse 183 (258)
..+||+|++||||...
T Consensus 108 ~~~fD~If~DPPY~~~ 123 (171)
T d1ws6a1 108 GERFTVAFMAPPYAMD 123 (171)
T ss_dssp TCCEEEEEECCCTTSC
T ss_pred CCccceeEEccccccC
Confidence 3579999999999864
No 8
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}
Probab=91.29 E-value=0.063 Score=41.34 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=40.4
Q ss_pred CCCeEEEEeChhHHHHHHhhC-CCCCceEEeeccccc--------ccC--CccccccCCCCCCchhhhccCccEEEECCC
Q 025067 111 SDSRVACIACPTLYAYLKKIR-PEVSPKILEYDMRFE--------QYG--SDFAFYDYNQPQDLPLELKHAFSVVVVDPP 179 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~-~~~~~~LLEyD~RF~--------~~g--~~FvfYDyn~P~~lp~~lk~~fD~Vv~DPP 179 (258)
.+.+|+=++|=|=...|.... .-.+++..|.|.+-- .++ +.+.++-... .++.....++||+|++|||
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~-~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA-ERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH-HHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccc-cccccccccccceeEechh
Confidence 345665555555444433211 113667777774432 112 1222222211 1122344678999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 025067 180 YLSKECLEKVSETVSFLA 197 (258)
Q Consensus 180 Flseec~eK~A~Tir~L~ 197 (258)
|... ....++..|.
T Consensus 93 y~~~----~~~~~l~~i~ 106 (152)
T d2esra1 93 YAKE----TIVATIEALA 106 (152)
T ss_dssp SHHH----HHHHHHHHHH
T ss_pred hccc----hHHHHHHHHH
Confidence 9643 3344455554
No 9
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}
Probab=90.89 E-value=0.075 Score=46.07 Aligned_cols=94 Identities=17% Similarity=0.082 Sum_probs=54.5
Q ss_pred CCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccc--------cC--C-ccccccCCCCCCchhhh---ccCccEEEE
Q 025067 111 SDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQ--------YG--S-DFAFYDYNQPQDLPLEL---KHAFSVVVV 176 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~--------~g--~-~FvfYDyn~P~~lp~~l---k~~fD~Vv~ 176 (258)
.+.+|+=++|=+=-..+.-.....+|+-+|.+.+.-. .| . +|+..|-- ++...+ ..+||+||+
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~---~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAF---DLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHH---HHHHHHHHTTCCEEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHH---HHhhhhHhhhcCCCEEEE
Confidence 4679998888765555542212347888999876522 12 1 34444421 122223 357999999
Q ss_pred CCCCCCH---------HHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 177 DPPYLSK---------ECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 177 DPPFlse---------ec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
|||..+. ..+..+...+..|+++ ++.|++||
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp-GG~Lv~~s 261 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE-GGILATAS 261 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEe
Confidence 9997642 2233455555566777 45676654
No 10
>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}
Probab=90.61 E-value=0.028 Score=45.13 Aligned_cols=16 Identities=44% Similarity=0.955 Sum_probs=13.4
Q ss_pred cCccEEEECCCCCCHH
Q 025067 169 HAFSVVVVDPPYLSKE 184 (258)
Q Consensus 169 ~~fD~Vv~DPPFlsee 184 (258)
.+||+|++||||...+
T Consensus 112 ~~fDlIflDPPY~~~~ 127 (182)
T d2fhpa1 112 LQFDLVLLDPPYAKQE 127 (182)
T ss_dssp CCEEEEEECCCGGGCC
T ss_pred CCcceEEechhhhhhH
Confidence 4799999999997654
No 11
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=90.23 E-value=0.11 Score=45.55 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=69.4
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecccccccC----------C---ccccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQYG----------S---DFAFY 155 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~g----------~---~FvfY 155 (258)
=|+.+..-....+...+.... .+.||+=+.|=|=-..+.-...+.+|+-+|.+.+.-... . +|+.=
T Consensus 111 G~f~dqr~nr~~~~~~~~~~~-~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~ 189 (309)
T d2igta1 111 GVFPEQIVHWEWLKNAVETAD-RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE 189 (309)
T ss_dssp SCCGGGHHHHHHHHHHHHHSS-SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS
T ss_pred ccccchhHHHHHHHHHHhhcc-CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeC
Confidence 355555555554454444433 567898887766444443322345788888886653221 1 23322
Q ss_pred cCCCCCCchhhh---ccCccEEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEech-------HHHHHH
Q 025067 156 DYNQPQDLPLEL---KHAFSVVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLLLTG-------EVQKER 215 (258)
Q Consensus 156 Dyn~P~~lp~~l---k~~fD~Vv~DPPFls----------eec~eK~A~Tir~L~k~~~~kiil~Tg-------~~me~~ 215 (258)
|-- ++...+ ..+||+||+|||-.+ ++-+..+...++.|+++++ -+|++|. ...+++
T Consensus 190 D~~---~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g-~~ll~t~~s~~~s~~~~~~~ 265 (309)
T d2igta1 190 DAM---KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKA-LGLVLTAYSIRASFYSMHEL 265 (309)
T ss_dssp CHH---HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTC-CEEEEEECCTTSCHHHHHHH
T ss_pred CHH---HhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCC-CEEEEecCCCCCCHHHHHHH
Confidence 211 111111 257999999999442 4455667777788888743 3444332 344555
Q ss_pred HHHHh
Q 025067 216 AAELL 220 (258)
Q Consensus 216 i~kll 220 (258)
+.+.+
T Consensus 266 ~~~~~ 270 (309)
T d2igta1 266 MRETM 270 (309)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66555
No 12
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=90.05 E-value=0.063 Score=42.74 Aligned_cols=15 Identities=40% Similarity=0.786 Sum_probs=13.1
Q ss_pred cCccEEEECCCCCCH
Q 025067 169 HAFSVVVVDPPYLSK 183 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (258)
.+||+|++||||...
T Consensus 114 ~~fDlIFlDPPY~~~ 128 (183)
T d2ifta1 114 PHFDVVFLDPPFHFN 128 (183)
T ss_dssp CCEEEEEECCCSSSC
T ss_pred CcccEEEechhHhhh
Confidence 469999999999874
No 13
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}
Probab=89.07 E-value=0.092 Score=45.71 Aligned_cols=109 Identities=9% Similarity=0.115 Sum_probs=58.7
Q ss_pred ccChhH--HHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeecccccccC-----------C--cccc
Q 025067 91 WYDAVT--AETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQYG-----------S--DFAF 154 (258)
Q Consensus 91 WYsd~T--a~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~~g-----------~--~Fvf 154 (258)
||-|.. ...|++.+. .+.+|+-++|=|=-..+... ..-..++-.|.+.+.-... . +|+.
T Consensus 127 lflDqR~~r~~l~~~~~-----~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~ 201 (317)
T d2b78a2 127 IFLDQRQVRNELINGSA-----AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 201 (317)
T ss_dssp SCGGGHHHHHHHHHTTT-----BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred CcHHHHHHHHHHHHHhh-----CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE
Confidence 665543 344544432 45899999887766665432 2234688899997654321 1 2444
Q ss_pred ccCCCCCCchhhh---ccCccEEEECCCCCCH---------HHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 155 YDYNQPQDLPLEL---KHAFSVVVVDPPYLSK---------ECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 155 YDyn~P~~lp~~l---k~~fD~Vv~DPPFlse---------ec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
.|-- +....+ ..+||+||+|||=.+. .-..++...+-.|+++ ++.|++||
T Consensus 202 ~d~~---~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p-gG~l~~~s 263 (317)
T d2b78a2 202 MDVF---DYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE-NGLIIAST 263 (317)
T ss_dssp SCHH---HHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred ccHH---HHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEe
Confidence 4321 111111 2479999999994432 1233344444455665 44566644
No 14
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=87.59 E-value=0.16 Score=41.06 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=12.7
Q ss_pred cCccEEEECCCCCC
Q 025067 169 HAFSVVVVDPPYLS 182 (258)
Q Consensus 169 ~~fD~Vv~DPPFls 182 (258)
+++|+||+||||..
T Consensus 22 ~SIDliitDPPYn~ 35 (279)
T d1eg2a_ 22 DSVQLIICDPPYNI 35 (279)
T ss_dssp TCEEEEEECCCSBC
T ss_pred CCccEEEECCCCCC
Confidence 78999999999974
No 15
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=86.28 E-value=0.18 Score=43.49 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=41.6
Q ss_pred hhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeeccccccc--------C--C--ccccccCCCCCCchhhh---cc
Q 025067 106 SLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY--------G--S--DFAFYDYNQPQDLPLEL---KH 169 (258)
Q Consensus 106 ~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~~--------g--~--~FvfYDyn~P~~lp~~l---k~ 169 (258)
..+. ++.+|+-++|=+=...+.-. ..-.+++-+|.+.+.-.. | + +|+.=|.. +....+ ..
T Consensus 141 ~~~~-~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~---~~~~~~~~~~~ 216 (324)
T d2as0a2 141 KWVQ-PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF---EEMEKLQKKGE 216 (324)
T ss_dssp GGCC-TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH---HHHHHHHHTTC
T ss_pred hhcC-CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh---hhhHHHHhccC
Confidence 4343 67899999886655554321 222479999999765332 1 1 12211110 111112 35
Q ss_pred CccEEEECCCCCC
Q 025067 170 AFSVVVVDPPYLS 182 (258)
Q Consensus 170 ~fD~Vv~DPPFls 182 (258)
+||+||+|||..+
T Consensus 217 ~fD~Vi~DpP~~~ 229 (324)
T d2as0a2 217 KFDIVVLDPPAFV 229 (324)
T ss_dssp CEEEEEECCCCSC
T ss_pred CCCchhcCCcccc
Confidence 7999999999875
No 16
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=85.93 E-value=0.36 Score=38.27 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=12.0
Q ss_pred cCccEEEECCCCC
Q 025067 169 HAFSVVVVDPPYL 181 (258)
Q Consensus 169 ~~fD~Vv~DPPFl 181 (258)
+++|+||+||||.
T Consensus 22 ~sVdliitdPPY~ 34 (256)
T d1g60a_ 22 KSVQLAVIDPPYN 34 (256)
T ss_dssp TCEEEEEECCCCS
T ss_pred CCcCEEEECCCCC
Confidence 6799999999996
No 17
>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}
Probab=85.28 E-value=0.22 Score=39.35 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=15.8
Q ss_pred ccCccEEEECCCCCCHHHHHHHH
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVS 190 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A 190 (258)
..+||+|++||||... ..+++.
T Consensus 109 ~~~fDlIf~DPPY~~~-~~~~~l 130 (183)
T d2fpoa1 109 GTPHNIVFVDPPFRRG-LLEETI 130 (183)
T ss_dssp CCCEEEEEECCSSSTT-THHHHH
T ss_pred ccccCEEEEcCccccc-hHHHHH
Confidence 3579999999999864 234443
No 18
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}
Probab=83.97 E-value=0.19 Score=41.05 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=13.3
Q ss_pred ccCccEEEECCCCCC
Q 025067 168 KHAFSVVVVDPPYLS 182 (258)
Q Consensus 168 k~~fD~Vv~DPPFls 182 (258)
.+++|+||+||||.+
T Consensus 29 ~~sVdli~tDPPY~~ 43 (320)
T d1booa_ 29 EESISLVMTSPPFAL 43 (320)
T ss_dssp SSCEEEEEECCCCSS
T ss_pred cCCCCEEEECCCCcC
Confidence 378999999999975
No 19
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=83.40 E-value=1.7 Score=35.55 Aligned_cols=108 Identities=8% Similarity=0.006 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcC----CCCCeEEEEeChhHHHHH--Hhh-CCCCCceEEeecccccc--------cCC-ccccccCCCC
Q 025067 97 AETVAQEAVSLCS----DSDSRVACIACPTLYAYL--KKI-RPEVSPKILEYDMRFEQ--------YGS-DFAFYDYNQP 160 (258)
Q Consensus 97 a~~La~~l~~~a~----~~~~~IaclstPSly~~l--k~~-~~~~~~~LLEyD~RF~~--------~g~-~FvfYDyn~P 160 (258)
-..|+-.|+.... .++.+|+-|||=|=+... .+. .|+..++-+|++.++-. .+. ..+..|-..|
T Consensus 55 rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~ 134 (227)
T d1g8aa_ 55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKP 134 (227)
T ss_dssp TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCG
T ss_pred ccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCc
Confidence 3456666665533 368999999987765543 333 46778999999976632 222 5678888777
Q ss_pred CCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 161 QDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 161 ~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
...+.. ...+|+|+.|.|.... ...+..-++..+|+ ++.+++++
T Consensus 135 ~~~~~~-~~~vD~i~~d~~~~~~--~~~~l~~~~~~Lkp-gG~lvi~~ 178 (227)
T d1g8aa_ 135 EEYRAL-VPKVDVIFEDVAQPTQ--AKILIDNAEVYLKR-GGYGMIAV 178 (227)
T ss_dssp GGGTTT-CCCEEEEEECCCSTTH--HHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cccccc-ccceEEEEEEccccch--HHHHHHHHHHhccc-CCeEEEEE
Confidence 665433 3679999999998765 45566666777776 44666653
No 20
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=79.81 E-value=0.86 Score=33.91 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=38.1
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+| |..-+-+++.. +|... + +.+||++||+...+.+.+.+..-..+|.++
T Consensus 43 ~~~dlvilD~~mp~~~G~e~~~~----lr~~~-~-~~piI~lT~~~~~~~~~~a~~~Ga~dyl~K 101 (137)
T d1ny5a1 43 KHFNVVLLDLLLPDVNGLEILKW----IKERS-P-ETEVIVITGHGTIKTAVEAMKMGAYDFLTK 101 (137)
T ss_dssp SCCSEEEEESBCSSSBHHHHHHH----HHHHC-T-TSEEEEEEETTCHHHHHHHHTTTCCEEEEE
T ss_pred cccccchHHHhhhhhhHHHHHHH----HHHhC-C-CCCEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 568888888 44445554433 33322 2 468999999988888888886666777665
No 21
>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}
Probab=78.22 E-value=2.5 Score=35.12 Aligned_cols=116 Identities=13% Similarity=0.033 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeeccccccc--------C--CccccccCCCCCCc
Q 025067 94 AVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDMRFEQY--------G--SDFAFYDYNQPQDL 163 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~RF~~~--------g--~~FvfYDyn~P~~l 163 (258)
-+|.+...+.+.+... ++.+|+=|||=|=...+.-...+.+++-+|+|..--.. | .+|+.=| +
T Consensus 104 H~TT~l~l~~l~~~~~-~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d------~ 176 (254)
T d2nxca1 104 HETTRLALKALARHLR-PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS------L 176 (254)
T ss_dssp SHHHHHHHHHHHHHCC-TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC------H
T ss_pred cchhhHHHHHHHhhcC-ccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEecc------c
Confidence 3466777778777765 78999999998877665443345679999999654321 2 1333222 2
Q ss_pred hhhh-ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech-HHHHHHHHHHh
Q 025067 164 PLEL-KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG-EVQKERAAELL 220 (258)
Q Consensus 164 p~~l-k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg-~~me~~i~kll 220 (258)
...+ .++||+|++. +..+.+.++...++.++|+ ++++|++-. ....+.+.+.|
T Consensus 177 ~~~~~~~~fD~V~an---i~~~~l~~l~~~~~~~Lkp-GG~lilSgil~~~~~~v~~~~ 231 (254)
T d2nxca1 177 EAALPFGPFDLLVAN---LYAELHAALAPRYREALVP-GGRALLTGILKDRAPLVREAM 231 (254)
T ss_dssp HHHGGGCCEEEEEEE---CCHHHHHHHHHHHHHHEEE-EEEEEEEEEEGGGHHHHHHHH
T ss_pred cccccccccchhhhc---cccccHHHHHHHHHHhcCC-CcEEEEEecchhhHHHHHHHH
Confidence 3333 4689999986 4455678888888888888 556665421 23344455444
No 22
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=74.19 E-value=4.3 Score=34.06 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhhcCC-CCCeEEEEeCh--hHHHHHHhhCCCCCceEEeecc------cccc-c-C-CccccccCCCCC
Q 025067 94 AVTAETVAQEAVSLCSD-SDSRVACIACP--TLYAYLKKIRPEVSPKILEYDM------RFEQ-Y-G-SDFAFYDYNQPQ 161 (258)
Q Consensus 94 d~Ta~~La~~l~~~a~~-~~~~IaclstP--Sly~~lk~~~~~~~~~LLEyD~------RF~~-~-g-~~FvfYDyn~P~ 161 (258)
...++.|.+.+.+.+.. ++++|+=+-|= ++=..|.+ ...+|+-.|.+. |-.. . | .+..|+-...-.
T Consensus 194 ~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~--~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 194 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT--QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHT--TSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred hhhhhHHHHHHHHhhccCCCceEEEecccccccchhccc--cccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhh
Confidence 34577788888776542 33445332221 11112322 123566666642 2211 1 2 122333222111
Q ss_pred Cch--hhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcE--EEechHHHHHHHHHHh-------CCcccceeec
Q 025067 162 DLP--LELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKL--LLLTGEVQKERAAELL-------GLRPCGFRPQ 230 (258)
Q Consensus 162 ~lp--~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~ki--il~Tg~~me~~i~kll-------~~~~~~F~P~ 230 (258)
.++ ...+..+|+||+|||=-+- .++...+-.+. + .+| |.|-+.-+..=+..++ .+.+.|+.|.
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~l~~~~-~--~~ivYVSCnp~TlaRDl~~l~~~gy~l~~i~~~D~FP~ 345 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIKLE-P--IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPH 345 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHHHC-C--SEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEECCSTT
T ss_pred hhhhhhhhhccCceEEeCCCCccH---HHHHHHHHHcC-C--CEEEEEeCCHHHHHHHHHHHHHCCCeEeEEEEEecCCC
Confidence 222 2235679999999999885 23433333332 2 255 4577765554454443 3455555553
No 23
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=74.13 E-value=2.7 Score=32.22 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=46.3
Q ss_pred HHHHHHHhhcC-CCCCeEEEEeChhH--HHHHHhh-CCCCCceEEeecccccccC--CccccccCCCCCCchhhhccCcc
Q 025067 99 TVAQEAVSLCS-DSDSRVACIACPTL--YAYLKKI-RPEVSPKILEYDMRFEQYG--SDFAFYDYNQPQDLPLELKHAFS 172 (258)
Q Consensus 99 ~La~~l~~~a~-~~~~~IaclstPSl--y~~lk~~-~~~~~~~LLEyD~RF~~~g--~~FvfYDyn~P~~lp~~lk~~fD 172 (258)
.|++.+++.+. .++.+|+=.||=|= -..+.+. ....+++-+|+|..-.... ......|+-... ...+||
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~-----~~~~fd 80 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWE-----PGEAFD 80 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCC-----CSSCEE
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccc-----cccccc
Confidence 34555555543 24668875555543 3444443 3345689999998765432 134444442221 125799
Q ss_pred EEEECCCCCC
Q 025067 173 VVVVDPPYLS 182 (258)
Q Consensus 173 ~Vv~DPPFls 182 (258)
+||.+|||+.
T Consensus 81 ~ii~npP~~~ 90 (223)
T d2ih2a1 81 LILGNPPYGI 90 (223)
T ss_dssp EEEECCCCCC
T ss_pred eecccCcccc
Confidence 9999999975
No 24
>d1yf3a1 c.66.1.28 (A:1-259) DNA methylase T4DAM {Bacteriophage T4 [TaxId: 10665]}
Probab=73.79 E-value=1.1 Score=35.86 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=39.6
Q ss_pred CccEEEECCCCCC----------HHHHHHHHHHHHHhcCCCCCcEEEech----HHHHHHHHHHh-CCcccceeecC
Q 025067 170 AFSVVVVDPPYLS----------KECLEKVSETVSFLARPGDSKLLLLTG----EVQKERAAELL-GLRPCGFRPQH 231 (258)
Q Consensus 170 ~fD~Vv~DPPFls----------eec~eK~A~Tir~L~k~~~~kiil~Tg----~~me~~i~kll-~~~~~~F~P~h 231 (258)
.-|+|-+||||.. ++=...++..++.|.+. +.|+|++.. +..-+.+.+++ +.++..+...|
T Consensus 164 ~~~fvYlDPPY~~~~~~y~~~~~~~d~~~l~~~l~~l~~~-~~~~~lSn~~~~~~~~~~~i~~lyk~~~~~~~~~~y 239 (259)
T d1yf3a1 164 DGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDR-GIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKY 239 (259)
T ss_dssp TTEEEEECCCCTTSCCGGGGGCCHHHHHHHHHHHHHHHTT-TCEEEEEEESEETTEECHHHHHHHTTSEEEECCHHH
T ss_pred cceEEEeCCccccccccccCCCcHHHHHHHHHHHHHHHcc-CCeEEEECCccccCCCCHHHHHHhcCCcEEEEEEEE
Confidence 4579999999963 23346677788888775 567888732 23345677777 66655554443
No 25
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=70.26 E-value=2 Score=30.96 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=35.0
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
..+|+||+| |-.-+.+. .+.+|......+.+||+.||......+.+.+..-..+|.+
T Consensus 43 ~~~dlil~D~~mp~~~G~~l----~~~lr~~~~~~~~pvi~lt~~~~~~~~~~~~~~G~~d~l~ 102 (121)
T d1zesa1 43 PWPDLILLDWMLPGGSGIQF----IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIT 102 (121)
T ss_dssp SCCSEEEECSSCTTSCHHHH----HHHHHHSTTTTTSCEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEeecCCCCCCHHHH----HHHHHhCccCCCCeEEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 458899998 55555543 3445543332345799999987777777776333344444
No 26
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}
Probab=68.19 E-value=2.5 Score=33.70 Aligned_cols=120 Identities=9% Similarity=0.184 Sum_probs=67.0
Q ss_pred HHHHHHHhhcCC-CCCeEE--EEeChhHHHHHHhhCCCCCceEEeec--------ccccccCCccccccCCCCCCchhhh
Q 025067 99 TVAQEAVSLCSD-SDSRVA--CIACPTLYAYLKKIRPEVSPKILEYD--------MRFEQYGSDFAFYDYNQPQDLPLEL 167 (258)
Q Consensus 99 ~La~~l~~~a~~-~~~~Ia--clstPSly~~lk~~~~~~~~~LLEyD--------~RF~~~g~~FvfYDyn~P~~lp~~l 167 (258)
+|.+++++.... ++..|+ +.|+=..-.+|.+..|+.+++.+|.| .|+..|+..|.++..+.- ++...+
T Consensus 10 Vll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~-~~~~~~ 88 (192)
T d1m6ya2 10 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR-EADFLL 88 (192)
T ss_dssp TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGG-GHHHHH
T ss_pred hHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHh-hHHHHH
Confidence 355666665432 345554 34455555667666788899999999 556667655655554431 233222
Q ss_pred ----ccCccEEEECCCCCC-------H--HHHHHHHHHHHHhcCCCCCcEEEechHHHHHH-HHHHh
Q 025067 168 ----KHAFSVVVVDPPYLS-------K--ECLEKVSETVSFLARPGDSKLLLLTGEVQKER-AAELL 220 (258)
Q Consensus 168 ----k~~fD~Vv~DPPFls-------e--ec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~-i~kll 220 (258)
.++||.|++|-+.-| + ..+.+.-..+.-++++ +++++++|-..-|+. +++.+
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~-gG~l~ii~f~s~Edr~vk~~f 154 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP-GGRIVVISFHSLEDRIVKETF 154 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE-EEEEEEEESSHHHHHHHHHHH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC-CCeeeeeccccHHHHHHHHHH
Confidence 368999999976633 1 1222222222333444 456766666555554 55555
No 27
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.28 E-value=1.6 Score=35.94 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=41.9
Q ss_pred CCeEEEEeChh--HHHHHHhhCCCCCceEEeeccccccc----------CCccccccCCCCCCchh----hhccCccEEE
Q 025067 112 DSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQY----------GSDFAFYDYNQPQDLPL----ELKHAFSVVV 175 (258)
Q Consensus 112 ~~~IaclstPS--ly~~lk~~~~~~~~~LLEyD~RF~~~----------g~~FvfYDyn~P~~lp~----~lk~~fD~Vv 175 (258)
..+|+-|||=| |+-.|.+..|+.+++..|++..=-.+ .+.........+..+.. .-.++||+||
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv 141 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 141 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence 45899998855 56556665667789999998432211 11222222222222222 2246799999
Q ss_pred ECCCCCCH
Q 025067 176 VDPPYLSK 183 (258)
Q Consensus 176 ~DPPFlse 183 (258)
+-|||...
T Consensus 142 sNPPY~~~ 149 (250)
T d2h00a1 142 CNPPFFAN 149 (250)
T ss_dssp ECCCCC--
T ss_pred ecCccccc
Confidence 99999964
No 28
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=66.68 E-value=3.7 Score=30.06 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=36.2
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..||+||+| |-.-+-++.++ +|.-... ..+||++|++...+...+.+..-..+|.++
T Consensus 50 ~~~dlillD~~mP~~dG~el~~~----ir~~~~~-~~piI~lT~~~~~~~~~~~~~~G~~~~l~K 109 (128)
T d2r25b1 50 ENYNMIFMDVQMPKVDGLLSTKM----IRRDLGY-TSPIVALTAFADDSNIKECLESGMNGFLSK 109 (128)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHH----HHHHSCC-CSCEEEEESCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCCEEEEEeCCCCCCHHHHHHH----HHHccCC-CCeEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 358889988 66666555433 3332222 357999999888888888874444555443
No 29
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=66.30 E-value=2.6 Score=31.18 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=35.9
Q ss_pred cCccEEEEC--CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD--PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D--PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+| .|-.+- -.+...+|......+.+||++||+...+.+.+.+..-..+|.++
T Consensus 44 ~~~dlil~D~~~p~~~G---~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~K 104 (139)
T d1w25a1 44 DLPDIILLDVMMPGMDG---FTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTK 104 (139)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEES
T ss_pred ccceeeeeeccccCCCc---hHHHHHhhhcccccCCCEEEEEcCCCHHHHHHHHHcCCCEEEEC
Confidence 568888887 555443 12334455544333457999999888887777773334445443
No 30
>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}
Probab=62.20 E-value=2.6 Score=36.09 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.7
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCCC
Q 025067 171 FSVVVVDPPYLSKECLEKVSETVSFLARPG 200 (258)
Q Consensus 171 fD~Vv~DPPFlseec~eK~A~Tir~L~k~~ 200 (258)
--+|+|||||-..+=-.++++++....+..
T Consensus 151 RgLVLIDPpYE~k~ey~~v~~~l~~a~kr~ 180 (271)
T d2oo3a1 151 RGLIFIDPSYERKEEYKEIPYAIKNAYSKF 180 (271)
T ss_dssp CEEEEECCCCCSTTHHHHHHHHHHHHHHHC
T ss_pred ceEEEecCCcCCHHHHHHHHHHHHHHHHhC
Confidence 349999999998655788888888777653
No 31
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=61.82 E-value=3.4 Score=31.75 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=37.9
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+| |-.-+-|.++++. - . ...+||+.|++...+.+.+.+..-..+|-++
T Consensus 47 ~~pDlvllDi~mP~~dG~e~~~~ir----~--~-~~~pIi~lTa~~~~~~~~~al~~Ga~~yl~K 104 (190)
T d1s8na_ 47 HKPDLVIMDVKMPRRDGIDAASEIA----S--K-RIAPIVVLTAFSQRDLVERARDAGAMAYLVK 104 (190)
T ss_dssp HCCSEEEEESSCSSSCHHHHHHHHH----H--T-TCSCEEEEEEGGGHHHHHTTGGGSCEEEEEE
T ss_pred CCCCEEEEeccccCcchHHHHHHHH----h--c-CCCCEEEEeCCCCHHHHHHHHHcCCCEeccC
Confidence 567888888 5555555544442 2 1 2458999999999999998885555666654
No 32
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=60.31 E-value=7 Score=27.92 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=36.5
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+| |---+-+++++ +|... ...+||+.|+....+...+.+..-..+|-++
T Consensus 44 ~~~dlillD~~mp~~~g~~~~~~----lr~~~--~~~piI~lt~~~~~~~~~~~~~~Ga~~yl~K 102 (122)
T d1kgsa2 44 EPFDVVILDIMLPVHDGWEILKS----MRESG--VNTPVLMLTALSDVEYRVKGLNMGADDYLPK 102 (122)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHH----HHHTT--CCCCEEEEESSCHHHHHHHTCCCCCSEEEES
T ss_pred hCccccccccccccchhHHHHHH----HHhcC--CCCcEEEEcCCCCHHHHHHHHHcCCceeecC
Confidence 457888888 44444444333 34322 2457999999888888888886656777665
No 33
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=57.70 E-value=5.3 Score=29.21 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=30.7
Q ss_pred ccCccEEEECCC---CCCHHHHHHHHHHHHHh-cCCC--CCcEEEechHHHHHHHHHHhCCccccee
Q 025067 168 KHAFSVVVVDPP---YLSKECLEKVSETVSFL-ARPG--DSKLLLLTGEVQKERAAELLGLRPCGFR 228 (258)
Q Consensus 168 k~~fD~Vv~DPP---Flseec~eK~A~Tir~L-~k~~--~~kiil~Tg~~me~~i~kll~~~~~~F~ 228 (258)
++.||+||+|== .-+-|. ++.+|.. .... ...||++||....+...+.+..-..+|.
T Consensus 48 ~~~~dlillD~~mP~~dG~el----~~~ir~~~~~~~~~~~~ii~lT~~~~~~~~~~~~~~G~~~~l 110 (134)
T d1dcfa_ 48 SHEHKVVFMDVCMPGVENYQI----ALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVL 110 (134)
T ss_dssp CTTCSEEEEECCSSTTTTTHH----HHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEE
T ss_pred hcCCCeEEEEeccCCCchHHH----HHHHHHhcccccCCCCeEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 445777777732 223333 3444433 2221 2357889998777777777633334443
No 34
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=55.35 E-value=5.1 Score=28.79 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=35.7
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+.||+||+|-=.-..+.++ +.+.+|.-. +.+||++||........+.+..-..+|.++
T Consensus 44 ~~~~dlii~D~~mp~~~G~~-~~~~~r~~~---~~pii~lt~~~~~~~~~~a~~~Ga~dyl~K 102 (121)
T d1xhfa1 44 EYDINLVIMDINLPGKNGLL-LARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITK 102 (121)
T ss_dssp HSCCSEEEECSSCSSSCHHH-HHHHHHHHC---CCEEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred hcCCCEEEeecccCCccCcH-HHHHHHhcC---CCcEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 35789999995444433333 334444432 458999999877777777763334445443
No 35
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=54.92 E-value=18 Score=28.45 Aligned_cols=108 Identities=13% Similarity=0.172 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhc---CCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccCC-ccccccCCCCC
Q 025067 96 TAETVAQEAVSLC---SDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYGS-DFAFYDYNQPQ 161 (258)
Q Consensus 96 Ta~~La~~l~~~a---~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g~-~FvfYDyn~P~ 161 (258)
....||..++.+- ..++.+|+=|||=+=+.. |.+..|..+++-+|+..+. +..+. .|+..|...|.
T Consensus 38 ~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~ 117 (209)
T d1nt2a_ 38 WRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPW 117 (209)
T ss_dssp GGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGG
T ss_pred cchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcc
Confidence 3346676666541 136899999999876544 3344566689999997432 22333 68888887765
Q ss_pred CchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 162 DLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 162 ~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
..+ ..-..+|+|+.|-+.... ...+...+...+|+ +++++++
T Consensus 118 ~~~-~~~~~vd~v~~~~~~~~~--~~~~l~~~~~~Lkp-gG~l~i~ 159 (209)
T d1nt2a_ 118 KYS-GIVEKVDLIYQDIAQKNQ--IEILKANAEFFLKE-KGEVVIM 159 (209)
T ss_dssp GTT-TTCCCEEEEEECCCSTTH--HHHHHHHHHHHEEE-EEEEEEE
T ss_pred ccc-cccceEEEEEecccChhh--HHHHHHHHHHHhcc-CCeEEEE
Confidence 432 223457888899877765 45555556667776 4466554
No 36
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}
Probab=54.29 E-value=2 Score=35.84 Aligned_cols=97 Identities=15% Similarity=0.053 Sum_probs=48.8
Q ss_pred CcccccccccccChhHHHHHHHHHHhhcCC-CCCeEEEEeChh--HHH----HHHhh-CCCCCceEEeecccccc-----
Q 025067 81 VSEDWRLSQFWYDAVTAETVAQEAVSLCSD-SDSRVACIACPT--LYA----YLKKI-RPEVSPKILEYDMRFEQ----- 147 (258)
Q Consensus 81 ~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~-~~~~IaclstPS--ly~----~lk~~-~~~~~~~LLEyD~RF~~----- 147 (258)
..+.+...||+--+.-+..+++.+...... ++.+|+=.||=| +-. .+.+. .+..+++=.|+|.+-..
T Consensus 86 ~~~~~~~g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~ 165 (328)
T d2f8la1 86 MKHGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVG 165 (328)
T ss_dssp TSSSCCGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHH
T ss_pred HHhcccCCeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHH
Confidence 345666778765555556666666555431 234565444432 322 23322 22234555566653221
Q ss_pred ---cCCcc--ccccCCCCCCchhhhccCccEEEECCCCCC
Q 025067 148 ---YGSDF--AFYDYNQPQDLPLELKHAFSVVVVDPPYLS 182 (258)
Q Consensus 148 ---~g~~F--vfYDyn~P~~lp~~lk~~fD~Vv~DPPFls 182 (258)
.+... ..-|... .....+||+||++|||+.
T Consensus 166 ~~~~~~~~~~~~~d~~~-----~~~~~~fD~vi~NPPy~~ 200 (328)
T d2f8la1 166 ADLQRQKMTLLHQDGLA-----NLLVDPVDVVISDLPVGY 200 (328)
T ss_dssp HHHHTCCCEEEESCTTS-----CCCCCCEEEEEEECCCSE
T ss_pred HHHhhhhhhhhcccccc-----ccccccccccccCCCCCC
Confidence 12222 2223221 112367999999999974
No 37
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=53.66 E-value=5.8 Score=28.35 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=36.4
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+|--.-..+-++-+ .-+|.+.. +.+||++||+.....+.+.+..-..+|.++
T Consensus 45 ~~~dliilD~~mp~~~G~e~~-~~ir~~~~--~~pvi~ls~~~~~~~~~~a~~~Ga~~yl~K 103 (118)
T d1u0sy_ 45 LKPDIVTMDITMPEMNGIDAI-KEIMKIDP--NAKIIVCSAMGQQAMVIEAIKAGAKDFIVK 103 (118)
T ss_dssp HCCSEEEEECSCGGGCHHHHH-HHHHHHCT--TCCEEEEECTTCHHHHHHHHHTTCCEEEES
T ss_pred ccCCEEEEecCCCCCCHHHHH-HHHHHhCC--CCcEEEEEccCCHHHHHHHHHcCCCEEEEC
Confidence 457788887544333333322 33344332 458999999988888888875555566554
No 38
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=52.41 E-value=5.8 Score=28.47 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=34.2
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+| |.--+.|.+.+ +|... + +.+||+.||+...+.+.+.+..-..+|.++
T Consensus 46 ~~~dlii~D~~mp~~~G~el~~~----l~~~~-~-~~piI~~t~~~~~~~~~~a~~~Ga~dyl~K 104 (123)
T d1krwa_ 46 KTPDVLLSDIRMPGMDGLALLKQ----IKQRH-P-MLPVIIMTAHSDLDAAVSAYQQGAFDYLPK 104 (123)
T ss_dssp CCCSEEEECCSSSSSTTHHHHHH----HHHHS-S-SCCEEESCCCSCHHHHHHHHHHTEEEECSS
T ss_pred CCCCEEEehhhcCCchHHHHHHH----HHHhC-C-CCeEEEEecCCCHHHHHHHHHcCCCeEEeC
Confidence 568888888 33445554333 33322 2 468999999888877777763333445443
No 39
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=50.68 E-value=3.8 Score=36.01 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=26.7
Q ss_pred ccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHH
Q 025067 168 KHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKER 215 (258)
Q Consensus 168 k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~ 215 (258)
+..||+|.+|| |++. ..-+--+++.+... -+|..|-..+..+
T Consensus 127 ~~~fDvIDiDP-fGs~--~pfldsAi~a~~~~---Gll~vTaTD~a~L 168 (375)
T d2dula1 127 HRYFHFIDLDP-FGSP--MEFLDTALRSAKRR---GILGVTATDGAPL 168 (375)
T ss_dssp TTCEEEEEECC-SSCC--HHHHHHHHHHEEEE---EEEEEEECCHHHH
T ss_pred cCcCCcccCCC-CCCc--HHHHHHHHHHhccC---CEEEEEecCchhh
Confidence 45699999997 9997 34455556666544 3555554444433
No 40
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=49.78 E-value=10 Score=27.06 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=35.2
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+| |---+-++++++ |... + ..++|+.||+...+.+.+.+..-..+|-.+
T Consensus 46 ~~~dlvi~D~~mp~~~G~e~~~~l----r~~~-~-~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~K 104 (123)
T d1dbwa_ 46 VRNGVLVTDLRMPDMSGVELLRNL----GDLK-I-NIPSIVITGHGDVPMAVEAMKAGAVDFIEK 104 (123)
T ss_dssp CCSEEEEEECCSTTSCHHHHHHHH----HHTT-C-CCCEEEEECTTCHHHHHHHHHTTCSEEEES
T ss_pred cCCcEEEEeccCccccchHHHHHH----HhcC-C-CCeEEEEEeeCCHHHHHHHHHCCCCEEEEC
Confidence 457788877 554555554433 3322 2 468999999888888887774444555543
No 41
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=49.25 E-value=7.2 Score=28.09 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=22.1
Q ss_pred CCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 201 DSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 201 ~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+||+.|+....+.+.+.+..-..+|.++
T Consensus 79 ~~piI~lt~~~~~~~~~~a~~~G~~~~l~K 108 (128)
T d1jbea_ 79 ALPVLMVTAEAKKENIIAAAQAGASGYVVK 108 (128)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCSEEEES
T ss_pred CCcEEEEECcCCHHHHHHHHHCCCCEEEEC
Confidence 457899999888888888774445566655
No 42
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}
Probab=48.83 E-value=3.2 Score=34.83 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=14.7
Q ss_pred CCCeEEEEeChhHHHHHHh
Q 025067 111 SDSRVACIACPTLYAYLKK 129 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~ 129 (258)
+...++|=-.|-+|.-+++
T Consensus 110 G~~V~~iEr~p~l~~ll~d 128 (250)
T d2oyra1 110 GCRVRMLERNPVVAALLDD 128 (250)
T ss_dssp TCCEEEEECCHHHHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHH
Confidence 4568888888888887764
No 43
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=46.20 E-value=9.5 Score=26.99 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=30.9
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|--.-..+-++ .++.|.+..+.+||++|+........+.+..-..+|-++
T Consensus 43 ~~~dlillD~~mp~~~G~~----~~~~i~~~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~K 100 (117)
T d2a9pa1 43 EQPDIIILDLMLPEIDGLE----VAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTK 100 (117)
T ss_dssp HCCSEEEECSSCSSSCHHH----HHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred cCCCEEEeccccCCCCccH----HHHHHHhCCCCCEEEEecCCCHHHHHHHHHcCCCEEEEC
Confidence 5688999984322222122 223333333457999998766666556652223455443
No 44
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=44.64 E-value=14 Score=27.15 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=34.5
Q ss_pred CccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 170 AFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 170 ~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+|+||+|==.-..+.++ +.+.+|........+||++|++.....+.+.+.+-..+|.++
T Consensus 56 ~pdlIllD~~mP~~~G~e-l~~~ir~~~~~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~K 115 (144)
T d1i3ca_ 56 RPNLILLDLNLPKKDGRE-VLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTK 115 (144)
T ss_dssp CCSEEEECSCCSSSCHHH-HHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECccccccchH-HHHHHHhCcccCCCeEEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 477888883222222222 344455433322457899999888888888874444555544
No 45
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.44 E-value=9.4 Score=29.75 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=66.0
Q ss_pred cccccccc-ccChhHHHHHHHHHHhhcC-CCCCeEEEEeChhHHHHHHhhCCCCCceEEeecc-----------------
Q 025067 83 EDWRLSQF-WYDAVTAETVAQEAVSLCS-DSDSRVACIACPTLYAYLKKIRPEVSPKILEYDM----------------- 143 (258)
Q Consensus 83 EDwqlSQF-WYsd~Ta~~La~~l~~~a~-~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~----------------- 143 (258)
+-|+..|. |+.++--..|.+.+.+... .++.||+-+||=+=..++.-...+-+|+=+|+-.
T Consensus 15 ~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~ 94 (229)
T d2bzga1 15 DKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEE 94 (229)
T ss_dssp HHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcccccc
Confidence 34445565 5666666667666655422 2567999999866444432111234555555542
Q ss_pred ---------cccccCC--ccccccCCCCCCchhhhccCccEEEE--CCCCCCHHHHHHHHHHHHHhcCCCCCcEEEec
Q 025067 144 ---------RFEQYGS--DFAFYDYNQPQDLPLELKHAFSVVVV--DPPYLSKECLEKVSETVSFLARPGDSKLLLLT 208 (258)
Q Consensus 144 ---------RF~~~g~--~FvfYDyn~P~~lp~~lk~~fD~Vv~--DPPFlseec~eK~A~Tir~L~k~~~~kiil~T 208 (258)
++..-+. +|+.-|+- .++....+.||+|+. -=-++..+-.+++...+..++++ ++++++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~~~d~~---~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp-gG~~~l~~ 168 (229)
T d2bzga1 95 PITEIPGTKVFKSSSGNISLYCCSIF---DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK-KFQYLLCV 168 (229)
T ss_dssp ECTTSTTCEEEEETTSSEEEEESCGG---GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred chhcccccceeeecCCcEEEEEcchh---hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC-cceEEEEE
Confidence 1111121 33433432 233344577887762 11233444568888889999998 44555544
No 46
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=42.99 E-value=6.3 Score=28.53 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=32.3
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCccccee
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFR 228 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~ 228 (258)
+.+|+||+|==.-..+.++ +.+.+|........+||++|+...+..+.+.+..-..+|.
T Consensus 50 ~~~dlii~D~~mP~~~G~e-l~~~lr~~~~~~~~pii~lt~~~~~~~~~~a~~~G~~~~l 108 (129)
T d1p6qa_ 50 NPHHLVISDFNMPKMDGLG-LLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVL 108 (129)
T ss_dssp SCCSEEEECSSSCSSCHHH-HHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEE
T ss_pred CCCCeEEeeeecCCCChHH-HHHHHHhCcccCCCeEEEEEecCCHHHHHHHHHCCCCEEE
Confidence 5688888884333333332 2233332211124578999998877777777622233443
No 47
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.69 E-value=15 Score=28.70 Aligned_cols=103 Identities=18% Similarity=0.113 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccc--------cccCC--ccccccCCCCCCc
Q 025067 96 TAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRF--------EQYGS--DFAFYDYNQPQDL 163 (258)
Q Consensus 96 Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF--------~~~g~--~FvfYDyn~P~~l 163 (258)
..+.|++.+.. .+++|+=|||=+=+.+ |.+. ...+++.+|++... +..+. .+...|.. .+
T Consensus 42 ~~~~la~~~~~----~g~~VLdIGcG~G~~a~~~a~~-~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ 113 (229)
T d1zx0a1 42 YMHALAAAASS----KGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWE---DV 113 (229)
T ss_dssp HHHHHHHHHTT----TCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHH---HH
T ss_pred HHHHHHHhhcc----CCCeEEEeeccchHHHHHHHHc-CCCeEEEeCCCHHHHHHHHHHhhhccccccccccccc---cc
Confidence 33445554432 5679999999775544 3332 23478999999433 22221 22222211 11
Q ss_pred hhhh-ccCccEEEECCCCCCHH-----HHHHHHHHHHHhcCCCCCcEEEe
Q 025067 164 PLEL-KHAFSVVVVDPPYLSKE-----CLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 164 p~~l-k~~fD~Vv~DPPFlsee-----c~eK~A~Tir~L~k~~~~kiil~ 207 (258)
...+ .++||.|+.|+...... -.+++-..++.++|+ ++.++++
T Consensus 114 ~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lkp-GG~~~~~ 162 (229)
T d1zx0a1 114 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP-GGVLTYC 162 (229)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE-EEEEEEC
T ss_pred ccccccccccceeecccccccccccccCHHHHHHHHHHHcCC-CcEEEEE
Confidence 1122 37899999999866532 234555667778887 4455553
No 48
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Probab=42.66 E-value=14 Score=26.99 Aligned_cols=58 Identities=9% Similarity=0.123 Sum_probs=33.7
Q ss_pred cCccEEEECC--CCC-CHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDP--PYL-SKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DP--PFl-seec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+|- |-. +-|+ .+.+|......+.+||++|+....+.+.+.+.+-..+|..+
T Consensus 54 ~~pdlillD~~mP~~dG~el----~~~ir~~~~~~~iPvI~ls~~~~~~~~~~a~~~Ga~~yl~K 114 (140)
T d1k68a_ 54 SRPDLILLDLNLPKKDGREV----LAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITK 114 (140)
T ss_dssp CCCSEEEECSSCSSSCHHHH----HHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEeeccccccChHH----HHHHHhCcccCCCcEEEEeCCCCHHHHHHHHHCCCCEEEEC
Confidence 3478888885 322 3333 23334322222346899999888877888774444556544
No 49
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=41.54 E-value=57 Score=25.91 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=60.2
Q ss_pred ChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHh--hCC-CCCceEEeecccccccCC-ccccccC--------CCC
Q 025067 93 DAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKK--IRP-EVSPKILEYDMRFEQYGS-DFAFYDY--------NQP 160 (258)
Q Consensus 93 sd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~--~~~-~~~~~LLEyD~RF~~~g~-~FvfYDy--------n~P 160 (258)
+.++...|...+... +.++|+=|||=+=|-++-= ..| +.+++.+|.|..+...+. .|-...+ ...
T Consensus 44 ~~~~g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a 120 (227)
T d1susa1 44 SADEGQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA 120 (227)
T ss_dssp CHHHHHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred CHHHHHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence 355666666666555 6789999999999988752 233 568999999987654421 2211111 112
Q ss_pred CC-chhhh-----ccCccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 161 QD-LPLEL-----KHAFSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 161 ~~-lp~~l-----k~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
.+ +|+-+ .++||+|++|= ..+....+-+.+.-|+++
T Consensus 121 ~~~L~~l~~~~~~~~~fD~iFiDa---~k~~y~~~~e~~~~ll~~ 162 (227)
T d1susa1 121 LPVLDEMIKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVKV 162 (227)
T ss_dssp HHHHHHHHHCGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBCT
T ss_pred HHHHHHHHhccccCCceeEEEecc---chhhhHHHHHHHHhhcCC
Confidence 22 33322 35799999993 333334444444556666
No 50
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=39.84 E-value=7.4 Score=30.37 Aligned_cols=66 Identities=9% Similarity=0.012 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhHh--hhcccccCCcccccCcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeCh
Q 025067 44 MLSSQALAALQEFLSEQNQTSET--AQNKTESDSDEVALVSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACP 121 (258)
Q Consensus 44 ~LSa~tLaAL~eF~~E~~~~~~~--l~~~~~~~~~~~~~~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstP 121 (258)
+|-.+=+.|++ |+..+.++... | |++ .++ -+|+..|+-...-.......++++|+.+
T Consensus 12 ~L~~yQ~~~v~-~~~~~~~~~~g~iL---aDe--~Gl---------------GKT~~~i~~~~~~~~~~~~~~~LIv~p~ 70 (230)
T d1z63a1 12 NLRPYQIKGFS-WMRFMNKLGFGICL---ADD--MGL---------------GKTLQTIAVFSDAKKENELTPSLVICPL 70 (230)
T ss_dssp CCCHHHHHHHH-HHHHHHHTTCCEEE---CCC--TTS---------------CHHHHHHHHHHHHHHTTCCSSEEEEECS
T ss_pred chhHHHHHHHH-HHHHhhhcCCCEEE---EeC--CCC---------------ChHHHHHHhhhhhhhcccccccceecch
Confidence 57788888884 76655443211 2 111 122 2666666543322222145789999999
Q ss_pred hHHHHHHhh
Q 025067 122 TLYAYLKKI 130 (258)
Q Consensus 122 Sly~~lk~~ 130 (258)
++...+.+.
T Consensus 71 ~l~~~W~~e 79 (230)
T d1z63a1 71 SVLKNWEEE 79 (230)
T ss_dssp TTHHHHHHH
T ss_pred hhhhHHHHH
Confidence 999888653
No 51
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=39.74 E-value=11 Score=30.63 Aligned_cols=114 Identities=11% Similarity=0.143 Sum_probs=68.3
Q ss_pred cccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCC-CCCceEEeecc--------cccccCC--cccc
Q 025067 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRP-EVSPKILEYDM--------RFEQYGS--DFAF 154 (258)
Q Consensus 88 SQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~-~~~~~LLEyD~--------RF~~~g~--~Fvf 154 (258)
..+.|.++..+.|++.+.+.. +..+|+=|||=+=+.. |.+..+ +.+++-+|++. ++...+. +|..
T Consensus 6 ~~~~~n~d~l~~l~~~~~~~~--~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~ 83 (281)
T d2gh1a1 6 RDLYYNDDYVSFLVNTVWKIT--KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE 83 (281)
T ss_dssp HHHHCCHHHHHHHHHTTSCCC--SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEE
T ss_pred HhHHhhHHHHHHHHHHHhccC--CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccc
Confidence 345678888999988876653 4679999999776554 333334 35678889874 4444442 5665
Q ss_pred ccCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 155 YDYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 155 YDyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
-|..+. | +.++||+|++--=+..-.=..++-+-+...+|+ ++++++.++
T Consensus 84 ~d~~~~---~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp-gG~lii~~~ 132 (281)
T d2gh1a1 84 GDATEI---E--LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKK-GGKIICFEP 132 (281)
T ss_dssp SCTTTC---C--CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEE-EEEEEEEEC
T ss_pred cccccc---c--ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCc-CcEEEEEEC
Confidence 566542 1 246799998865432110023344444555565 456766553
No 52
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=39.58 E-value=7.9 Score=27.71 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=32.5
Q ss_pred CccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 170 AFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 170 ~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+|+||+| |---+-|.. +.+|.-... ..+||+.|+......+.+.+..-..+|-++
T Consensus 47 ~~dlillD~~mP~~dG~e~~----~~ir~~~~~-~~~ii~~t~~~~~~~~~~a~~~Ga~~~l~K 105 (123)
T d1dz3a_ 47 RPDILLLDIIMPHLDGLAVL----ERIRAGFEH-QPNVIMLTAFGQEDVTKKAVELGASYFILK 105 (123)
T ss_dssp CCSEEEEESCCSSSCHHHHH----HHHHHHCSS-CCEEEEEEETTCHHHHHHHHHTTCEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHH----HHHHhcCCC-CCeEEEEECcCCHHHHHHHHHCCCCEEEEC
Confidence 35666666 333444443 334432222 346899999888888888875555555544
No 53
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Probab=38.49 E-value=5.8 Score=35.68 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.0
Q ss_pred cCccEEEECCCCCCH
Q 025067 169 HAFSVVVVDPPYLSK 183 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (258)
.+||+||+.|||+..
T Consensus 255 ~kfD~Ii~NPPfg~~ 269 (524)
T d2ar0a1 255 PKAHIVATNPPFGSA 269 (524)
T ss_dssp CCEEEEEECCCCTTC
T ss_pred ccceeEEecCCcccc
Confidence 569999999999854
No 54
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=38.39 E-value=10 Score=31.51 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=50.9
Q ss_pred cCcccccccc---cccChhHHHHHHHHHHhhcCCCCCeEEEEeC--hhHHHHHHhhCCCCCceEEeecccccccCCcccc
Q 025067 80 LVSEDWRLSQ---FWYDAVTAETVAQEAVSLCSDSDSRVACIAC--PTLYAYLKKIRPEVSPKILEYDMRFEQYGSDFAF 154 (258)
Q Consensus 80 ~~~EDwqlSQ---FWYsd~Ta~~La~~l~~~a~~~~~~Iaclst--PSly~~lk~~~~~~~~~LLEyD~RF~~~g~~Fvf 154 (258)
.+..++|.++ |-| -+.|+........ +..+|+.||- =++-..+.+..+..++.+.|+|..--....+|.-
T Consensus 46 ~LDg~~q~~~~de~~Y----he~l~h~~l~~~~-~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~ 120 (274)
T d1iy9a_ 46 FLDGMVMTSEKDEFVY----HEMVAHVPLFTHP-NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP 120 (274)
T ss_dssp EETTEEEEETTTHHHH----HHHHHHHHHHHSS-SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred EECCceeeecCchhhc----hhhhccchhhccC-CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhCh
Confidence 3455666665 223 2344444444433 5689999876 4444444442345689999999764322111211
Q ss_pred c---cCCCCC-Cc-----hhhh---ccCccEEEECCCC
Q 025067 155 Y---DYNQPQ-DL-----PLEL---KHAFSVVVVDPPY 180 (258)
Q Consensus 155 Y---Dyn~P~-~l-----p~~l---k~~fD~Vv~DPPF 180 (258)
. -++.|- ++ -..+ +.+||+||+|+|-
T Consensus 121 ~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~ 158 (274)
T d1iy9a_ 121 SIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTE 158 (274)
T ss_dssp HHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSS
T ss_pred hhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCC
Confidence 0 122221 11 1222 4679999999765
No 55
>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=38.29 E-value=5.9 Score=34.47 Aligned_cols=16 Identities=19% Similarity=0.623 Sum_probs=13.3
Q ss_pred ccCccEEEECCCCCCH
Q 025067 168 KHAFSVVVVDPPYLSK 183 (258)
Q Consensus 168 k~~fD~Vv~DPPFlse 183 (258)
..+||+||+.|||+..
T Consensus 242 ~~~fD~Ii~NPPfg~~ 257 (425)
T d2okca1 242 STLVDVILANPPFGTR 257 (425)
T ss_dssp SSCEEEEEECCCSSCC
T ss_pred ccccceEEecCCCCCC
Confidence 3579999999999754
No 56
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=37.99 E-value=5.2 Score=28.83 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=35.2
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..+|+||+| |.--+-|. ...+|.... +.+||+.|+....+...+.+..-..+|-++
T Consensus 44 ~~~dlvl~D~~mP~~~G~el----~~~ir~~~~--~~piI~lt~~~~~~~~~~a~~~Ga~dyl~K 102 (121)
T d1ys7a2 44 NRPDAIVLDINMPVLDGVSV----VTALRAMDN--DVPVCVLSARSSVDDRVAGLEAGADDYLVK 102 (121)
T ss_dssp SCCSEEEEESSCSSSCHHHH----HHHHHHTTC--CCCEEEEECCCTTTCCCTTTTTTCSEEEES
T ss_pred CCCCEEEEEeeccCcccHHH----HHHHHhcCC--CCEEEEEEeeCCHHHHHHHHHCCCCEEEEC
Confidence 457888888 44444433 344454332 468999999877776666665555666554
No 57
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=37.43 E-value=25 Score=25.42 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=35.6
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+| |.--+-+.+.+ +|... + +.+||++||+...+.+.+.+..-..+|..+
T Consensus 43 ~~~dlil~D~~mP~~~G~el~~~----lr~~~-~-~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~K 101 (140)
T d1qkka_ 43 DFAGIVISDIRMPGMDGLALFRK----ILALD-P-DLPMILVTGHGDIPMAVQAIQDGAYDFIAK 101 (140)
T ss_dssp TCCSEEEEESCCSSSCHHHHHHH----HHHHC-T-TSCEEEEECGGGHHHHHHHHHTTCCEEEES
T ss_pred cCcchHHHhhccCCCCHHHHHHH----HHHhC-C-CCcEEEEECCCCHHHHHHHHHcCCCEeecC
Confidence 568888888 33333444333 33332 2 468999999888888888874445666654
No 58
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.64 E-value=14 Score=27.53 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=37.8
Q ss_pred ccCccEEEEC--CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 168 KHAFSVVVVD--PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 168 k~~fD~Vv~D--PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
...||+||+| +| +..+ ....+........+||+.||+...+.+.+.+..-..+|-++
T Consensus 49 ~~~~Dlvl~D~~mp--~~~~----~~~~~~~~~~p~~pvI~lta~~~~~~~~~al~~Ga~~yL~K 107 (189)
T d1qo0d_ 49 DVPVDVVFTSIFQN--RHHD----EIAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQ 107 (189)
T ss_dssp SSCCSEEEEECCSS--THHH----HHHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEES
T ss_pred cCCCCEEEEcCCCC--CcHH----HHHHHHHHcCCCCCEEEEeccchHHHHHHHHHcCCcEEEEe
Confidence 3579999996 44 3333 22233444433568999999999999998884445677665
No 59
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=35.17 E-value=13 Score=27.61 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=33.6
Q ss_pred ccCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 168 KHAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 168 k~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
.+.+|+||+| |---+-+. .+.+|........+||+.|+....+.+.+.+..-..+|-.
T Consensus 53 ~~~~DlillD~~mP~~dG~el----~~~ir~~~~~~~iPiI~lt~~~~~~~~~~a~~~Ga~d~l~ 113 (153)
T d1w25a2 53 GGPVDLVIVNAAAKNFDGLRF----TAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILS 113 (153)
T ss_dssp HSSCSEEEEETTCSSSCHHHH----HHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEE
T ss_pred cCCCCEEEEECccccccchHH----HHHHHhccccccceeEEeecCCCHHHHHHHHhcCcceEEE
Confidence 4668999998 54444432 2333322221244689999987777777776333444443
No 60
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=34.84 E-value=15 Score=26.43 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=31.6
Q ss_pred cCccEEEEC---CCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVD---PPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~D---PPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+| |---+-+. .+.+|... ...++|+.|+....+.+.+.+..-..+|-.+
T Consensus 47 ~~~DlvllD~~mP~~~G~el----~~~ir~~~--~~~~vivlt~~~~~~~~~~a~~~Ga~~yl~K 105 (138)
T d1a04a2 47 LDPDLILLDLNMPGMNGLET----LDKLREKS--LSGRIVVFSVSNHEEDVVTALKRGADGYLLK 105 (138)
T ss_dssp HCCSEEEEETTSTTSCHHHH----HHHHHHSC--CCSEEEEEECCCCHHHHHHHHHTTCSEEEET
T ss_pred cCCCEEEEecCCCCCCHHHH----HHHHHhhC--CCCCEEEEEEECCHHHHHHHHHcCCCEEEEC
Confidence 457777777 22223332 23333321 2457888888777777777774444555554
No 61
>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}
Probab=34.59 E-value=7.7 Score=32.91 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=34.0
Q ss_pred Ccccccccc---cccChhHHHHHHHHHHhhcCCCCCeEEEEeChh--HHHHHHhhCCCCCceEEeecccc
Q 025067 81 VSEDWRLSQ---FWYDAVTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRF 145 (258)
Q Consensus 81 ~~EDwqlSQ---FWYsd~Ta~~La~~l~~~a~~~~~~IaclstPS--ly~~lk~~~~~~~~~LLEyD~RF 145 (258)
+....|+++ |-|.+ .|+...+-... ..++|++||.=. +-..+.+..+..++.+.|+|..-
T Consensus 61 LDg~~q~~~~De~~YhE----~l~h~pl~~~~-~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~V 125 (295)
T d1inla_ 61 LDGITMTTEKDEFMYHE----MLAHVPMFLHP-NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLV 125 (295)
T ss_dssp ETTEEEEETTTHHHHHH----HHHHHHHHHSS-SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHH
T ss_pred ECCEEEEecCchhhhhh----hhcchhHhhCC-CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHH
Confidence 334455443 44443 35544443333 568999998753 22233332345689999999553
No 62
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=33.24 E-value=6.1 Score=32.56 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=55.6
Q ss_pred ccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhh-CCCCCceEEeeccccccc--------C--C--ccccc
Q 025067 89 QFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAYLKKI-RPEVSPKILEYDMRFEQY--------G--S--DFAFY 155 (258)
Q Consensus 89 QFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~lk~~-~~~~~~~LLEyD~RF~~~--------g--~--~FvfY 155 (258)
-||+.....++. .+.+... ++.+|+=++|=+=+..|.-. ....+++-.|.+..--.+ | + +++.-
T Consensus 88 ~~f~~~~~~er~--ri~~~~~-~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~ 164 (260)
T d2frna1 88 IMFSPANVKERV--RMAKVAK-PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 164 (260)
T ss_dssp SCCCGGGHHHHH--HHHHHCC-TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred ccEecCCHHHHH--HHHhhcC-CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc
Confidence 477777665543 2333333 56788877776555444311 233478888888543211 1 2 22233
Q ss_pred cCCCCCCchhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcC
Q 025067 156 DYNQPQDLPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLAR 198 (258)
Q Consensus 156 Dyn~P~~lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k 198 (258)
|... ++. ++.||+||++||..+.+.+.+ +++.|..
T Consensus 165 D~~~---~~~--~~~~D~Ii~~~p~~~~~~l~~---a~~~l~~ 199 (260)
T d2frna1 165 DNRD---FPG--ENIADRILMGYVVRTHEFIPK---ALSIAKD 199 (260)
T ss_dssp CTTT---CCC--CSCEEEEEECCCSSGGGGHHH---HHHHEEE
T ss_pred chHH---hcc--CCCCCEEEECCCCchHHHHHH---HHhhcCC
Confidence 4321 221 367999999999999877654 4555543
No 63
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}
Probab=33.02 E-value=18 Score=27.65 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=19.2
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcC
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLAR 198 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k 198 (258)
+.=.+||+||++. .+..+.+...++.+..
T Consensus 30 ~~~g~vlID~g~~-~~~~~~l~~~i~~~~~ 58 (228)
T d1x8ha_ 30 GAKGVTVVGATWT-PDTARELHKLIKRVSR 58 (228)
T ss_dssp CSSCEEEESCCSS-HHHHHHHHHHHHTTCC
T ss_pred ECCEEEEEeCCCC-HHHHHHHHHHHHHhcC
Confidence 3334999999984 4445666666766654
No 64
>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.62 E-value=31 Score=28.59 Aligned_cols=44 Identities=16% Similarity=0.024 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCCCCeEEEEeChh--HHHHHHhhCCCCCceEEeecc
Q 025067 99 TVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDM 143 (258)
Q Consensus 99 ~La~~l~~~a~~~~~~IaclstPS--ly~~lk~~~~~~~~~LLEyD~ 143 (258)
.|+....-... ..++|++||-=. +-..+.+..+..++.+.|+|.
T Consensus 67 ~l~h~~l~~~~-~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~ 112 (285)
T d2o07a1 67 MIANLPLCSHP-NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE 112 (285)
T ss_dssp HHHHHHHTTSS-SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH
T ss_pred HhccHhhhhCc-CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH
Confidence 45544443333 568999998653 222233323456899999994
No 65
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.57 E-value=12 Score=27.12 Aligned_cols=55 Identities=11% Similarity=0.037 Sum_probs=33.5
Q ss_pred cCccEEEECC---CCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDP---PYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DP---PFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|- -.-+-+. ++.+|.... ..+|+++||....+...+.+..-..+|..
T Consensus 51 ~~~dlillD~~mP~~dG~el----~~~ir~~~~--~~pii~lt~~~~~~~~~~~~~~G~~~~l~ 108 (133)
T d2ayxa1 51 NHIDIVLSDVNMPNMDGYRL----TQRIRQLGL--TLPVIGVTANALAEEKQRCLESGMDSCLS 108 (133)
T ss_dssp SCCSEEEEEESSCSSCCHHH----HHHHHHHHC--CSCEEEEESSTTSHHHHHHHHCCCEEEEE
T ss_pred cCceEEEEeccCCCCCHHHH----HHHHHHhCC--CCCEEEEeccCCHHHHHHHHHcCCCEEEE
Confidence 5688888883 3344443 444555543 35799999987777777766333344443
No 66
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}
Probab=32.30 E-value=63 Score=22.83 Aligned_cols=79 Identities=10% Similarity=0.014 Sum_probs=55.4
Q ss_pred CCCeEEEEeChhHHHHHHhh--CCCCCceEEeecccccc--cCCccccccCCCCCCchhhhc-cCccEEEECCCCCCHHH
Q 025067 111 SDSRVACIACPTLYAYLKKI--RPEVSPKILEYDMRFEQ--YGSDFAFYDYNQPQDLPLELK-HAFSVVVVDPPYLSKEC 185 (258)
Q Consensus 111 ~~~~IaclstPSly~~lk~~--~~~~~~~LLEyD~RF~~--~g~~FvfYDyn~P~~lp~~lk-~~fD~Vv~DPPFlseec 185 (258)
..+||++||.--|-..|-.. .-+.++..+|-|.-=-. ++++|+.-||+.+..+-+... ...|+|..+==....++
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~E~EnI~~~~ 89 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDM 89 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCSCHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEEEEecCcCHHH
Confidence 45799999999998877642 34678888887755322 345788888888776655443 45799988766666666
Q ss_pred HHHH
Q 025067 186 LEKV 189 (258)
Q Consensus 186 ~eK~ 189 (258)
++++
T Consensus 90 L~~l 93 (111)
T d1kjqa2 90 LIQL 93 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 67
>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=30.54 E-value=26 Score=28.77 Aligned_cols=116 Identities=14% Similarity=0.041 Sum_probs=58.0
Q ss_pred CcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChh--HHHHHHhhCCCCCceEEeecccccccCCcccccc--
Q 025067 81 VSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRFEQYGSDFAFYD-- 156 (258)
Q Consensus 81 ~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPS--ly~~lk~~~~~~~~~LLEyD~RF~~~g~~FvfYD-- 156 (258)
+...+|.++.+-. .--+.|+....-... +..+|++||.=. +-..+.+ .+..++.+.|+|..--....+|.-+.
T Consensus 44 Ldg~~q~~~~de~-~Yhe~l~~~~l~~~~-~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~ 120 (276)
T d1mjfa_ 44 LDGTVQLVTLGER-SYHEPLVHPAMLAHP-KPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNG 120 (276)
T ss_dssp ETTEEEEETTTTH-HHHHHHHHHHHHHSS-CCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTT
T ss_pred ECCceeeeccchh-HHHHHhhcchhhcCC-CCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccc
Confidence 3456776664311 123455554443434 678999998763 2222323 34468999999976543221121111
Q ss_pred -------CCCCC-Cc-----hhhh--ccCccEEEECCCCCCHHHH----HHHHHHHHHhcCC
Q 025067 157 -------YNQPQ-DL-----PLEL--KHAFSVVVVDPPYLSKECL----EKVSETVSFLARP 199 (258)
Q Consensus 157 -------yn~P~-~l-----p~~l--k~~fD~Vv~DPPFlseec~----eK~A~Tir~L~k~ 199 (258)
+..|. .| -..+ ..+||+||+|++-...... ...-+.++..+++
T Consensus 121 ~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~ 182 (276)
T d1mjfa_ 121 LLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN 182 (276)
T ss_dssp HHHHHHTTCCSSEEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEE
T ss_pred hhhhhhccCCCCceEEEChHHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCC
Confidence 11221 11 0112 3679999999876532111 1233445555565
No 68
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=29.73 E-value=24 Score=24.83 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=33.0
Q ss_pred cCccEEEECC---CCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceee
Q 025067 169 HAFSVVVVDP---PYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRP 229 (258)
Q Consensus 169 ~~fD~Vv~DP---PFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P 229 (258)
+.+|+||+|= -.-+-|. .+.+|...+ +.+||++||+...+.+.+.+..-..+|-.
T Consensus 44 ~~~dlillD~~mP~~~G~el----~~~lr~~~~--~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~ 101 (119)
T d1peya_ 44 ERPDLVLLDMKIPGMDGIEI----LKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFA 101 (119)
T ss_dssp HCCSEEEEESCCTTCCHHHH----HHHHHHHCT--TCEEEEEESSCCHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEeccCCCCCHHHH----HHHHHHhCC--CCcEEEEecCCCHHHHHHHHHCCCCEEEE
Confidence 4577777773 3233343 334454433 46899999987777777776444455544
No 69
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=29.61 E-value=53 Score=25.89 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcC----CCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecccccc--------cCC-ccccccCCCCCC
Q 025067 98 ETVAQEAVSLCS----DSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDMRFEQ--------YGS-DFAFYDYNQPQD 162 (258)
Q Consensus 98 ~~La~~l~~~a~----~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~RF~~--------~g~-~FvfYDyn~P~~ 162 (258)
..||..|..... .++.+|+=|||=|=+.. |.+..|+..++-+|+..|.-. .+. .++.-|...|..
T Consensus 57 sklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~ 136 (230)
T d1g8sa_ 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE 136 (230)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGG
T ss_pred cHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcc
Confidence 367766666543 36899999999876644 334467778999999875532 122 566777777664
Q ss_pred chhhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEe
Q 025067 163 LPLELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLL 207 (258)
Q Consensus 163 lp~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~ 207 (258)
.. .....+|+|+.|-..... .+.+...++.++|+ +++++++
T Consensus 137 ~~-~~~~~v~~i~~~~~~~~~--~~~~l~~~~r~LKp-gG~~~i~ 177 (230)
T d1g8sa_ 137 YA-NIVEKVDVIYEDVAQPNQ--AEILIKNAKWFLKK-GGYGMIA 177 (230)
T ss_dssp GT-TTCCCEEEEEECCCSTTH--HHHHHHHHHHHEEE-EEEEEEE
T ss_pred cc-cccceeEEeeccccchHH--HHHHHHHHHHhccc-CceEEEE
Confidence 33 233456788888887755 45566677777777 4455554
No 70
>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}
Probab=29.57 E-value=14 Score=31.28 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=51.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeChh---HHHHHHhhCCCCCceEEeecccccccCCc-ccccc---CCCCC------C--
Q 025067 98 ETVAQEAVSLCSDSDSRVACIACPT---LYAYLKKIRPEVSPKILEYDMRFEQYGSD-FAFYD---YNQPQ------D-- 162 (258)
Q Consensus 98 ~~La~~l~~~a~~~~~~IaclstPS---ly~~lk~~~~~~~~~LLEyD~RF~~~g~~-FvfYD---yn~P~------~-- 162 (258)
+.|+...+-... ..++|++||.=. +.+.++. .+..++.+.|+|..--....+ |-.+. ++.|. +
T Consensus 65 e~l~h~~l~~~~-~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~ 142 (312)
T d1uira_ 65 ETLVHPAMLTHP-EPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR 142 (312)
T ss_dssp HHHHHHHHHHSS-CCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH
T ss_pred HHHhhhhhhhCC-CcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH
Confidence 334443333323 568999999763 3333332 355689999999664322111 11110 12221 1
Q ss_pred -chhhhccCccEEEECC--CCCCHHHH-----HHHHHHHHHhcCCC
Q 025067 163 -LPLELKHAFSVVVVDP--PYLSKECL-----EKVSETVSFLARPG 200 (258)
Q Consensus 163 -lp~~lk~~fD~Vv~DP--PFlseec~-----eK~A~Tir~L~k~~ 200 (258)
+-.....+||+||+|+ |++....- ...-+.++.+++++
T Consensus 143 ~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~ 188 (312)
T d1uira_ 143 AYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG 188 (312)
T ss_dssp HHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred HHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC
Confidence 1122246799999997 46532110 12334556666663
No 71
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.96 E-value=75 Score=25.80 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=49.8
Q ss_pred CCCeEEEEeChhHHHHH-HhhCCCCCceEEeecccc-------cccC--C--ccccccCCCCCCchhhhccCccEEEECC
Q 025067 111 SDSRVACIACPTLYAYL-KKIRPEVSPKILEYDMRF-------EQYG--S--DFAFYDYNQPQDLPLELKHAFSVVVVDP 178 (258)
Q Consensus 111 ~~~~IaclstPSly~~l-k~~~~~~~~~LLEyD~RF-------~~~g--~--~FvfYDyn~P~~lp~~lk~~fD~Vv~DP 178 (258)
++++|+-|||=+=.-.+ -.+..-.+++.+|....- ...+ . .|+.=|... ..+| ..+||+||+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~-l~~~---~~~~D~i~se~ 113 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLED-VHLP---FPKVDIIISEW 113 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT-SCCS---SSCEEEEEECC
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhh-ccCc---ccceeEEEEEe
Confidence 56899999997622222 222233478888888521 1111 1 222223221 1122 36799999977
Q ss_pred CC---CCHHHHHHHHHHHHHhcCC
Q 025067 179 PY---LSKECLEKVSETVSFLARP 199 (258)
Q Consensus 179 PF---lseec~eK~A~Tir~L~k~ 199 (258)
.+ .++..+..+...++.++|+
T Consensus 114 ~~~~~~~e~~~~~~~~a~~r~Lkp 137 (328)
T d1g6q1_ 114 MGYFLLYESMMDTVLYARDHYLVE 137 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEE
T ss_pred cceeeccchhHHHHHHHHHhccCC
Confidence 64 4566678888888888887
No 72
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=27.91 E-value=81 Score=22.93 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeChhHHHHHHhhCCCCCceEEeecc--------cccccCC--ccccccCCCCCCchhh
Q 025067 97 AETVAQEAVSLCSDSDSRVACIACPTLYAYLKKIRPEVSPKILEYDM--------RFEQYGS--DFAFYDYNQPQDLPLE 166 (258)
Q Consensus 97 a~~La~~l~~~a~~~~~~IaclstPSly~~lk~~~~~~~~~LLEyD~--------RF~~~g~--~FvfYDyn~P~~lp~~ 166 (258)
+..|...+.+... +..+|+=|||=+=...+.-...+.+++-+|+.. |+...+. .++.-|.. ++|.
T Consensus 24 ~~~~~~~~~~~l~-~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~---~l~~- 98 (226)
T d1ve3a1 24 IETLEPLLMKYMK-KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR---KLSF- 98 (226)
T ss_dssp HHHHHHHHHHSCC-SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT---SCCS-
T ss_pred HHHHHHHHHHhcC-CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccc---cccc-
Confidence 4445555555544 678999999987664332112345788888873 3323321 34444443 2321
Q ss_pred hccCccEEEECCCCCCHHH-----HHHHHHHHHHhcCCCCCcEEEech
Q 025067 167 LKHAFSVVVVDPPYLSKEC-----LEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 167 lk~~fD~Vv~DPPFlseec-----~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
-.++||+|++ +.+-++ +.++-.-+..++|+ |+++++.+.
T Consensus 99 ~~~~fD~I~~---~~~l~~~~~~d~~~~l~~i~~~Lkp-gG~lii~~~ 142 (226)
T d1ve3a1 99 EDKTFDYVIF---IDSIVHFEPLELNQVFKEVRRVLKP-SGKFIMYFT 142 (226)
T ss_dssp CTTCEEEEEE---ESCGGGCCHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred cCcCceEEEE---ecchhhCChhHHHHHHHHHHHHcCc-CcEEEEEEc
Confidence 1367998777 233322 33444555666676 456766543
No 73
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.88 E-value=11 Score=31.46 Aligned_cols=133 Identities=16% Similarity=0.134 Sum_probs=65.8
Q ss_pred cccccChhHHHHHHHHHHhhcCCCCCeEEEEeCh----hHHHHHHhhCCCCCceEEeec-cccc-------ccC-C--cc
Q 025067 88 SQFWYDAVTAETVAQEAVSLCSDSDSRVACIACP----TLYAYLKKIRPEVSPKILEYD-MRFE-------QYG-S--DF 152 (258)
Q Consensus 88 SQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstP----Sly~~lk~~~~~~~~~LLEyD-~RF~-------~~g-~--~F 152 (258)
-.|+.-|.++...+..+ .. . ++.+|+=+|+= |++-+-. ...+..++-+|.+ .|.+ .+| . ..
T Consensus 74 G~~~~QD~sS~l~~~~L-~~-~-~g~~vLD~cAapGgKt~~la~l-~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~ 149 (293)
T d2b9ea1 74 GHLILQDRASCLPAMLL-DP-P-PGSHVIDACAAPGNKTSHLAAL-LKNQGKIFAFDLDAKRLASMATLLARAGVSCCEL 149 (293)
T ss_dssp TSEEECCTGGGHHHHHH-CC-C-TTCEEEESSCTTCHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cEEEEcCCccccccccc-CC-C-ccceEEecccchhhHHHHHHHH-hcCCceEeeecCCHHHHHHHHHHHHhcCccceee
Confidence 35666666665555554 32 1 56778776653 3432211 1234567778876 2332 223 1 22
Q ss_pred ccccCCCCCCchh--hhccCccEEEECCCCCCHHHH-----------------HHHHHHHH-Hh-----cCCCCCcEEEe
Q 025067 153 AFYDYNQPQDLPL--ELKHAFSVVVVDPPYLSKECL-----------------EKVSETVS-FL-----ARPGDSKLLLL 207 (258)
Q Consensus 153 vfYDyn~P~~lp~--~lk~~fD~Vv~DPPFlseec~-----------------eK~A~Tir-~L-----~k~~~~kiil~ 207 (258)
+..|.. .++. ...+.||.|++|||=-+.-.+ .+++..=+ .| .++ ++.||=+
T Consensus 150 ~~~d~~---~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~l~~-gG~lvYs 225 (293)
T d2b9ea1 150 AEEDFL---AVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYS 225 (293)
T ss_dssp EECCGG---GSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEE
T ss_pred eehhhh---hhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhhccc-ccEEEEe
Confidence 233322 1111 124679999999995443221 22222211 11 133 4456554
Q ss_pred c----hHHHHHHHHHHhCCccccee
Q 025067 208 T----GEVQKERAAELLGLRPCGFR 228 (258)
Q Consensus 208 T----g~~me~~i~kll~~~~~~F~ 228 (258)
| .+++|..|.+.|.-++-.|+
T Consensus 226 TCSl~~~ENe~vV~~~L~~~~~~~~ 250 (293)
T d2b9ea1 226 TCSLCQEENEDVVRDALQQNPGAFR 250 (293)
T ss_dssp ESCCCGGGTHHHHHHHHTTSTTTEE
T ss_pred eccCChhHhHHHHHHHHHhCCCCEE
Confidence 4 37889999998854443333
No 74
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.84 E-value=23 Score=24.69 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=29.8
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|-=.-..+.++ .++.+.......||+.|+........+.+..-..+|-++
T Consensus 44 ~~~dliilD~~mp~~~g~~----~~~~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~K 101 (120)
T d1zgza1 44 QSVDLILLDINLPDENGLM----LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK 101 (120)
T ss_dssp SCCSEEEEESCCSSSCHHH----HHHHHHTTCCCEEEEEESSCCHHHHHHHHHHTCSEEEES
T ss_pred cCCCEEeeehhhccchhHH----HHHHHhccCCCeEEEEEccCCHHHHHHHHHCCCCEEEEC
Confidence 3456666664333333333 223333333457899998777666666653223444443
No 75
>d1jx7a_ c.114.1.1 (A:) Hypothetical protein YchN {Escherichia coli [TaxId: 562]}
Probab=24.60 E-value=37 Score=23.69 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=22.1
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCC
Q 025067 171 FSVVVVDPPYLSKECLEKVSETVSFLARP 199 (258)
Q Consensus 171 fD~Vv~DPPFlseec~eK~A~Tir~L~k~ 199 (258)
+=+|+..|||+++.+++-+-.+...+.+.
T Consensus 4 ~~ii~~~~P~~~~~~~~al~~A~a~~~~~ 32 (117)
T d1jx7a_ 4 IVIVANGAPYGSESLFNSLRLAIALREQE 32 (117)
T ss_dssp EEEEECCCTTTCSHHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcC
Confidence 45889999999998887766666666554
No 76
>d1gsaa1 c.30.1.3 (A:1-122) Prokaryotic glutathione synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.47 E-value=14 Score=27.13 Aligned_cols=28 Identities=32% Similarity=0.816 Sum_probs=18.0
Q ss_pred ccccCCCCCCchhhhccCccEEEE--CCCCCCH
Q 025067 153 AFYDYNQPQDLPLELKHAFSVVVV--DPPYLSK 183 (258)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~--DPPFlse 183 (258)
-||....+..++ | ..||+|++ ||||-.+
T Consensus 65 ~~~~~~~~~~~~--L-~~fd~i~mRkDPPfd~~ 94 (122)
T d1gsaa1 65 EWFSFVGEQDLP--L-ADLDVILMRKDPPFDTE 94 (122)
T ss_dssp CCEEEEEEEEEE--G-GGSSEEEECCCCCCCHH
T ss_pred cceeeeeeEEcc--c-ccccEEEEecCCCCcHH
Confidence 355554444333 2 57998887 9999854
No 77
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=24.47 E-value=24 Score=27.52 Aligned_cols=100 Identities=16% Similarity=0.058 Sum_probs=56.1
Q ss_pred HHHHHHHhhcCCCCCeEEEEeChhHHHHHH--hh-CCCCCceEEeeccccccc--------CC---ccccccCCCCCCch
Q 025067 99 TVAQEAVSLCSDSDSRVACIACPTLYAYLK--KI-RPEVSPKILEYDMRFEQY--------GS---DFAFYDYNQPQDLP 164 (258)
Q Consensus 99 ~La~~l~~~a~~~~~~IaclstPSly~~lk--~~-~~~~~~~LLEyD~RF~~~--------g~---~FvfYDyn~P~~lp 164 (258)
.+|..+..+.-.++.+|+-|||=|=|.... +. .++..++.+|+|...... +- .++.=|..+ .++
T Consensus 63 ~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~--~~~ 140 (213)
T d1dl5a1 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY--GVP 140 (213)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG--CCG
T ss_pred hhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH--ccc
Confidence 344444333333788999999999987642 32 456689999999755433 11 122222111 111
Q ss_pred hhhccCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEech
Q 025067 165 LELKHAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTG 209 (258)
Q Consensus 165 ~~lk~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg 209 (258)
..++||+|++...+-.- .+. +...+|+ +++|++..|
T Consensus 141 --~~~~fD~I~~~~~~~~~--p~~----l~~~Lkp-GG~lv~pv~ 176 (213)
T d1dl5a1 141 --EFSPYDVIFVTVGVDEV--PET----WFTQLKE-GGRVIVPIN 176 (213)
T ss_dssp --GGCCEEEEEECSBBSCC--CHH----HHHHEEE-EEEEEEEBC
T ss_pred --cccchhhhhhhccHHHh--HHH----HHHhcCC-CcEEEEEEC
Confidence 14679999998643321 121 2233566 567777554
No 78
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Probab=24.24 E-value=22 Score=26.10 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=33.9
Q ss_pred CccEEEECC--CCCC-HHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 170 AFSVVVVDP--PYLS-KECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 170 ~fD~Vv~DP--PFls-eec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
.+|+||+|- |=.+ -|+ .+.+|......+.+||++|+....+.+.+.+..-..+|.++
T Consensus 62 ~pdlillD~~mP~~~G~el----~~~ir~~~~~~~ipiI~lT~~~~~~~~~~~~~~Ga~~~l~K 121 (149)
T d1k66a_ 62 RPAVILLDLNLPGTDGREV----LQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVK 121 (149)
T ss_dssp CCSEEEECSCCSSSCHHHH----HHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEEC
T ss_pred CCCeEEccccccCCCcHHH----HHHHHhccccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEEC
Confidence 477888775 2222 322 22233211112347999999888888888885556677655
No 79
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Probab=23.33 E-value=33 Score=25.45 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=17.9
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhc
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLA 197 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~ 197 (258)
+.-.+||+||++.... .+++...++.+.
T Consensus 34 ~~~~~iliD~g~~~~~-~~~l~~~~~~~~ 61 (219)
T d1m2xa_ 34 TDKGVVVIDCPWGEDK-FKSFTDEIYKKH 61 (219)
T ss_dssp ETTEEEEESCCSSGGG-HHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCHHH-HHHHHHHHHhcc
Confidence 3334999999986554 355555555543
No 80
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.25 E-value=12 Score=30.89 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=48.0
Q ss_pred ccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChhHHHH--HHhhCCCCCceEEeecc-cc-------cccCC-cc-
Q 025067 85 WRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPTLYAY--LKKIRPEVSPKILEYDM-RF-------EQYGS-DF- 152 (258)
Q Consensus 85 wqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPSly~~--lk~~~~~~~~~LLEyD~-RF-------~~~g~-~F- 152 (258)
++.-+||--|..+...+..+.-. ++.+|+=+|+--==+. |.....+..++-.|.+. |. +.+|- ..
T Consensus 79 ~~~G~~~vQD~sS~l~~~~L~~~---~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~ 155 (284)
T d1sqga2 79 FEDGWVTVQDASAQGCMTWLAPQ---NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATV 155 (284)
T ss_dssp GGGTSEEECCHHHHTHHHHHCCC---TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEE
T ss_pred hhccEEEeccccccccccccCcc---ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccccee
Confidence 45556777777777766655322 5677776665421111 11222234566667663 22 22331 11
Q ss_pred ccccCCCCCCchhhhccCccEEEECCCCCCHH
Q 025067 153 AFYDYNQPQDLPLELKHAFSVVVVDPPYLSKE 184 (258)
Q Consensus 153 vfYDyn~P~~lp~~lk~~fD~Vv~DPPFlsee 184 (258)
+..+-.. .......+.||.|++|||=-+.-
T Consensus 156 ~~~~~~~--~~~~~~~~~fd~IL~DaPCSg~G 185 (284)
T d1sqga2 156 KQGDGRY--PSQWCGEQQFDRILLDAPCSATG 185 (284)
T ss_dssp EECCTTC--THHHHTTCCEEEEEEECCCCCGG
T ss_pred eeccccc--cchhcccccccEEEEeccccccC
Confidence 1111111 11122346799999999975543
No 81
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=22.84 E-value=26 Score=24.48 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=23.1
Q ss_pred cCccEEEECC---CCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHh
Q 025067 169 HAFSVVVVDP---PYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELL 220 (258)
Q Consensus 169 ~~fD~Vv~DP---PFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll 220 (258)
+.+|+||+|= ---+-| +.+.+|........+||++|+........+.+
T Consensus 44 ~~~dlil~D~~mp~~dG~e----l~~~ir~~~~~~~iPii~lt~~~~~~~~~~~~ 94 (123)
T d1mb3a_ 44 NKPDLILMDIQLPEISGLE----VTKWLKEDDDLAHIPVVAVTAFAMKGDEERIR 94 (123)
T ss_dssp HCCSEEEEESBCSSSBHHH----HHHHHHHSTTTTTSCEEEEC------CHHHHH
T ss_pred CCCCEEEEEeccCCCcHHH----HHHHHHhCCCcCCCCeEEEEEecCHHHHHHHH
Confidence 4577888883 223333 33444543332244789999877766666655
No 82
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=22.53 E-value=26 Score=29.83 Aligned_cols=63 Identities=13% Similarity=-0.052 Sum_probs=34.8
Q ss_pred CcccccccccccChhHHHHHHHHHHhhcCCCCCeEEEEeChh--HHHHHHhhCCCCCceEEeecccc
Q 025067 81 VSEDWRLSQFWYDAVTAETVAQEAVSLCSDSDSRVACIACPT--LYAYLKKIRPEVSPKILEYDMRF 145 (258)
Q Consensus 81 ~~EDwqlSQFWYsd~Ta~~La~~l~~~a~~~~~~IaclstPS--ly~~lk~~~~~~~~~LLEyD~RF 145 (258)
+..++|.+..--- .--+.|+...+-... ..++|++||.=. +-..+.+..+-.++.+.|+|..-
T Consensus 78 LDg~~q~~e~de~-~YhE~l~h~pl~~~~-~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~V 142 (312)
T d2b2ca1 78 LDGIVQATERDEF-SYQEMLAHLPMFAHP-DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMV 142 (312)
T ss_dssp ETTEEEEESSSSS-HHHHHHHHHHHHHSS-SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHH
T ss_pred ECCceeeecccHH-HHHHHhhhHHHhcCC-CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHH
Confidence 4456666654210 112344444333333 568999998653 33333332344689999999764
No 83
>d2fiaa1 d.108.1.1 (A:1-157) Probable acetyltransferase EF1919 {Enterococcus faecalis [TaxId: 1351]}
Probab=21.61 E-value=42 Score=23.52 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=47.5
Q ss_pred ccEEEECCCCCCHHHHHHHHHHHHHhcCCCC-CcEEEechHHHHHH--HHHHhCCcccceeecCCCCCCCceeeee
Q 025067 171 FSVVVVDPPYLSKECLEKVSETVSFLARPGD-SKLLLLTGEVQKER--AAELLGLRPCGFRPQHSSKLGNEFRLFT 243 (258)
Q Consensus 171 fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~-~kiil~Tg~~me~~--i~kll~~~~~~F~P~h~n~L~Nef~cyt 243 (258)
...+.++|-|-+.---+++-..+.-.++..+ .+|.+-|...+... +.+-+|.+.+.-.+.+.+....+|.||-
T Consensus 78 i~~~~v~~~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~v~e~~~~~~~~~~~~~~~~ 153 (157)
T d2fiaa1 78 LKRFATSPNYIAKGYGSLLFHELEKRAVWEGRRKMYAQTNHTNHRMIRFFESKGFTKIHESLQMNRLDFGSFYLYV 153 (157)
T ss_dssp EEEEEECGGGTTTTHHHHHHHHHHHHHHTTTCCEEEEEEETTCHHHHHHHHHTTCEEEEEECCTTCGGGCCEEEEE
T ss_pred ecccEECHHHcCCCCcchhhHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHHCCCEEeeeECCcCCCCCcceEEEE
Confidence 4468899999987766666555554444333 35777777666552 2244599888777777654445778874
No 84
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.41 E-value=16 Score=30.70 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=32.1
Q ss_pred hhccCccEEEECCCCC---------------CHHHHHHHHHHHHHhc-------CCCCCcEEEech----HHHHHHHHHH
Q 025067 166 ELKHAFSVVVVDPPYL---------------SKECLEKVSETVSFLA-------RPGDSKLLLLTG----EVQKERAAEL 219 (258)
Q Consensus 166 ~lk~~fD~Vv~DPPFl---------------seec~eK~A~Tir~L~-------k~~~~kiil~Tg----~~me~~i~kl 219 (258)
...+.||.|++|||=- +.+=+.+++..=+.|+ |+ ++.|+-||= +++|..|.+.
T Consensus 181 ~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~-gG~lVYsTCSl~~eENE~VV~~~ 259 (313)
T d1ixka_ 181 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP-GGILVYSTCSLEPEENEFVIQWA 259 (313)
T ss_dssp GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESCCCGGGTHHHHHHH
T ss_pred cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC-CcEEEEeeccCChHhHHHHHHHH
Confidence 3457899999999932 2222344444322222 33 446665543 7888888887
Q ss_pred h
Q 025067 220 L 220 (258)
Q Consensus 220 l 220 (258)
|
T Consensus 260 L 260 (313)
T d1ixka_ 260 L 260 (313)
T ss_dssp H
T ss_pred H
Confidence 7
No 85
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=21.18 E-value=47 Score=23.12 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=32.1
Q ss_pred cCccEEEECC---CCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDP---PYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DP---PFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
+.+|+||+|= ---+-|.+ +.+|.-. .+.+||++|+....+.+.+.+..-..+|.++
T Consensus 43 ~~~dliilD~~mP~~~G~e~~----~~i~~~~--~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~K 101 (119)
T d2pl1a1 43 HIPDIAIVDLGLPDEDGLSLI----RRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTK 101 (119)
T ss_dssp SCCSEEEECSCCSSSCHHHHH----HHHHHTT--CCSCEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred cccceeehhccCCCchhHHHH----HHHHhcC--cccceEeeeccCCHHHHHHHHHcCCCEEEEC
Confidence 3466777762 22233332 2333322 2457999999887777777775555666554
No 86
>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}
Probab=20.61 E-value=13 Score=30.83 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=12.4
Q ss_pred cCccEEEECCCCCCH
Q 025067 169 HAFSVVVVDPPYLSK 183 (258)
Q Consensus 169 ~~fD~Vv~DPPFlse 183 (258)
...++||+.|||+.+
T Consensus 166 ~~~GlIVtNPPYGER 180 (249)
T d1o9ga_ 166 SAPDVVLTDLPYGER 180 (249)
T ss_dssp CCCSEEEEECCGGGS
T ss_pred CCCCEEEeCCCcccc
Confidence 446799999999965
No 87
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=20.26 E-value=39 Score=23.62 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=34.4
Q ss_pred cCccEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcEEEechHHHHHHHHHHhCCcccceeec
Q 025067 169 HAFSVVVVDPPYLSKECLEKVSETVSFLARPGDSKLLLLTGEVQKERAAELLGLRPCGFRPQ 230 (258)
Q Consensus 169 ~~fD~Vv~DPPFlseec~eK~A~Tir~L~k~~~~kiil~Tg~~me~~i~kll~~~~~~F~P~ 230 (258)
..||+||+|==.-..+.++ +...+|.... ..+||+.|+....+.+.+.+..-..+|..+
T Consensus 42 ~~~dlillD~~mP~~~G~~-~~~~lr~~~~--~~~ii~it~~~~~~~~~~a~~~Ga~dyl~K 100 (120)
T d1p2fa2 42 EAFHVVVLDVMLPDYSGYE-ICRMIKETRP--ETWVILLTLLSDDESVLKGFEAGADDYVTK 100 (120)
T ss_dssp SCCSEEEEESBCSSSBHHH-HHHHHHHHCT--TSEEEEEESCCSHHHHHHHHHHTCSEEEES
T ss_pred CCCCEEEEeCcccccchhH-HHHHHhhcCC--CCcEEEEecCCCHHHHHHHHHCCCCEEEEC
Confidence 3578888885222222233 3344554432 458999999887777777763333455443
Done!