Your job contains 1 sequence.
>025068
MAYQSIPGPGSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE
AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGR
LRPATLFSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPY
QQYVPIYGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTS
PLPTVQAPYPTVHARWRF
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025068
(258 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 920 2.4e-92 1
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 819 1.2e-81 1
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 508 1.1e-48 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 474 4.4e-45 1
TAIR|locus:2044370 - symbol:AT2G46780 species:3702 "Arabi... 438 2.8e-41 1
TAIR|locus:2017779 - symbol:AT1G22910 species:3702 "Arabi... 428 3.3e-40 1
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 423 1.1e-39 1
TAIR|locus:2102435 - symbol:ARP1 "ABA-regulated RNA-bindi... 346 1.6e-31 1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 333 3.8e-30 1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif... 325 2.7e-29 1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti... 325 2.7e-29 1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24... 320 9.1e-29 1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ... 319 1.2e-28 1
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"... 319 1.2e-28 1
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"... 318 1.5e-28 1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24... 318 1.5e-28 1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ... 318 1.5e-28 1
WB|WBGene00006321 - symbol:sup-12 species:6239 "Caenorhab... 317 1.9e-28 1
UNIPROTKB|O45189 - symbol:sup-12 "Protein SUP-12, isoform... 317 1.9e-28 1
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"... 314 3.9e-28 1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ... 312 6.4e-28 1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein... 310 1.0e-27 1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"... 310 1.0e-27 1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 308 1.7e-27 1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ... 306 2.8e-27 1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"... 305 3.5e-27 1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 304 4.5e-27 1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ... 303 5.7e-27 1
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein... 303 5.7e-27 1
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 295 4.0e-26 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 292 8.4e-26 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 289 1.8e-25 1
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi... 260 2.1e-22 1
TAIR|locus:2077577 - symbol:AT3G06970 species:3702 "Arabi... 257 4.3e-22 1
UNIPROTKB|E2RM01 - symbol:RBM24 "Uncharacterized protein"... 241 2.1e-20 1
TAIR|locus:2164082 - symbol:AT5G53720 species:3702 "Arabi... 236 7.2e-20 1
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 183 1.2e-18 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 183 1.2e-18 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 183 1.2e-18 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 175 1.3e-18 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 182 2.6e-18 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 182 2.9e-18 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 182 6.7e-18 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 182 8.6e-18 2
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 190 1.9e-17 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 182 5.2e-17 2
TAIR|locus:2063177 - symbol:AT2G41060 species:3702 "Arabi... 182 5.8e-17 2
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 191 1.5e-16 2
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 184 1.6e-16 2
TAIR|locus:2103670 - symbol:UBA2A "UBP1-associated protei... 186 1.8e-16 2
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 187 2.3e-16 2
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 204 3.7e-16 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 199 7.1e-16 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 202 8.0e-16 1
TAIR|locus:2055951 - symbol:AT2G22100 species:3702 "Arabi... 200 1.6e-15 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 180 2.6e-15 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 198 3.5e-15 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 187 4.8e-15 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 197 5.5e-15 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 193 1.7e-14 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 185 1.8e-14 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 185 1.8e-14 1
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 185 1.8e-14 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 185 1.8e-14 1
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 192 2.0e-14 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 188 2.0e-14 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 190 2.4e-14 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 176 2.7e-14 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 176 3.5e-14 2
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 182 3.8e-14 1
UNIPROTKB|B4DM51 - symbol:MSI2 "RNA-binding protein Musas... 181 4.9e-14 1
UNIPROTKB|H0YA61 - symbol:RBM24 "RNA-binding protein 24" ... 181 4.9e-14 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 180 6.2e-14 1
TAIR|locus:2047685 - symbol:AT2G19380 species:3702 "Arabi... 188 9.5e-14 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 163 1.0e-13 2
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 186 1.1e-13 1
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 170 1.3e-13 2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 176 1.6e-13 1
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 182 1.8e-13 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 183 2.2e-13 1
DICTYBASE|DDB_G0275971 - symbol:DDB_G0275971 "RNA recogni... 185 2.5e-13 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 174 2.7e-13 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 173 3.4e-13 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 169 4.1e-13 2
UNIPROTKB|J3QKT5 - symbol:MSI2 "RNA-binding protein Musas... 172 4.4e-13 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 182 4.4e-13 1
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 178 5.2e-13 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 178 5.2e-13 1
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 160 5.8e-13 2
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 178 6.8e-13 1
UNIPROTKB|H0YHB7 - symbol:MSI1 "RNA-binding protein Musas... 170 7.1e-13 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 170 7.1e-13 1
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 164 8.0e-13 2
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 177 9.3e-13 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 177 1.0e-12 1
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 178 1.1e-12 1
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 178 1.1e-12 1
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 178 1.1e-12 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 168 1.2e-12 1
UNIPROTKB|F1NKP3 - symbol:RBM38 "RNA-binding protein 38" ... 167 1.5e-12 1
WARNING: Descriptions of 696 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
Identities = 171/244 (70%), Positives = 198/244 (81%)
Query: 19 FQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 78
F YLNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILEAVVI DKNTGRSKGYGFV
Sbjct: 11 FHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFV 70
Query: 79 TFREPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLY-------GRLRPATLFSGST 131
TFR+PEAARRACADPTP IDGRRANCNLASLGRPRP + Y GRLRPA+ + G+
Sbjct: 71 TFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNV 130
Query: 132 QATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQ--GIYNPY--QQYVPIY 187
Q RG IG++ YQQPLPYNYQQG+VYP YG YGPEY+Y Q G+Y+PY QQY+ +Y
Sbjct: 131 QGPRGSLIGNYPYQQPLPYNYQQGVVYP-YGVTAYGPEYMYSQSQGLYSPYMGQQYLQVY 189
Query: 188 GVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSPLPTVQA 247
GVPG VN+ VY YGQL QTIP H YT VQGY +PG I+Q GGP ++ +TTS +P +QA
Sbjct: 190 GVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQA 249
Query: 248 PYPT 251
PYP+
Sbjct: 250 PYPS 253
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 158/247 (63%), Positives = 184/247 (74%)
Query: 19 FQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 78
F YLNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFV
Sbjct: 11 FHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFV 70
Query: 79 TFREPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLY-------GRLRPATLFSGST 131
TFR+PEAARRAC DPTP IDGRRANCNLASLGR RP + Y GR+RP + + GS
Sbjct: 71 TFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSV 130
Query: 132 QATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQ--GIYNPY--QQYVPIY 187
Q+ RG + GS Y QP YNYQQG+VYP YG YGP+Y+Y Q G Y PY QQY+ +Y
Sbjct: 131 QSPRGLHFGSHPYHQPPTYNYQQGVVYP-YGVTPYGPDYMYSQSQGFYGPYMGQQYLQVY 189
Query: 188 GVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSPLPTVQA 247
GVPG VN+ Y YGQL TIPG+H YT QGY PG ++Q G TSP+ +Q+
Sbjct: 190 GVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGA-------TSPMSAIQS 242
Query: 248 PYPTVHA 254
PYP+ A
Sbjct: 243 PYPSPSA 249
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 116/231 (50%), Positives = 139/231 (60%)
Query: 21 YLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 80
Y SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYGFVTF
Sbjct: 6 YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
Query: 81 REPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIG 140
RE ++A RA ADP P IDGR+ANCN+AS GRPRP GR + S S + GP
Sbjct: 66 RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTG---SPSQYQSGGPSTY 122
Query: 141 SFGYQQPLPYNYQQGMVYPSYGYATYGPE-YVYPQGIYNP-------YQQYVPIYG---- 188
+ G PLP ++YPSYGY TY P+ + Y Q +YN YQQ +YG
Sbjct: 123 T-GMAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGGAT 180
Query: 189 VPGTVNTAVYP----YGQLGQT--IPGSHAYTPVQGYGMPGHQIMQFGGPN 233
P + + P YG Q +P H + Q Y H +F P+
Sbjct: 181 SPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPS 231
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 115/246 (46%), Positives = 142/246 (57%)
Query: 21 YLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 80
Y SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYGFVTF
Sbjct: 6 YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65
Query: 81 REPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIG 140
R+ ++A RA ADP P IDGR+ANCN+AS GRPRP GR + GS +G
Sbjct: 66 RDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQ-----GGSPSQYQGGGQS 120
Query: 141 SF-GYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPY---QQYVP--IYG-----V 189
S+ G P+ ++YPSYGY TY EY Y Q +YN QY +YG
Sbjct: 121 SYTGMAAPVQQAAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGGGGATS 179
Query: 190 PGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGG----PNLNAITTSPLPTV 245
P + N PY L P + + Q Y HQ Q P+ ++ P V
Sbjct: 180 PSSSNIMPSPYYYLQAPSPRPYLHHQ-QHYQYHHHQQQQQQQQQRLPSASSYLIYP-SNV 237
Query: 246 QAPYPT 251
+AP P+
Sbjct: 238 EAPTPS 243
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 98/190 (51%), Positives = 119/190 (62%)
Query: 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE 82
N+ DT TK+FVGGLAWETQ +TMRRYFEQFGEI+EAVVITDKNTGRSKGYGFVTF+E
Sbjct: 13 NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72
Query: 83 PEAARRACADPTPFIDGRRANCNLASLG--RPRPQVL----YGRLR-PAT---LFSGSTQ 132
EAA RAC + P IDGRRANCNLA LG +PRP GR R P + L + S Q
Sbjct: 73 AEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVGLVAPSPQ 132
Query: 133 ATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPY----QQYVPIYG 188
+F +QQ + Q Y +YG++ Y E +YP YN + QQ+ P G
Sbjct: 133 FRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYNHHLYGGQQFSPYMG 192
Query: 189 VPGTVNTAVY 198
P +T ++
Sbjct: 193 HPSAGSTGMF 202
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 106/214 (49%), Positives = 125/214 (58%)
Query: 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAA 86
GDTTYTKVFVGGLAWET ETM+++FEQFGEILEAVVITDK +GRSKGYGFVTFRE EAA
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 87 RRACADPTPFIDGRRANCNLASLG--RPRPQVLY----GRLRPATLFSGSTQATRGPYIG 140
R AC D TP IDGRRANCNLASLG R +P GR+ + + Q GP
Sbjct: 68 RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP 127
Query: 141 SFGYQQPLPYNYQQGMVYPSYGYATYGPEYV-YPQGIYNPYQ-QYVPIYGVPGTVNTAVY 198
QP + + + +GY+ Y P+Y +P +Y Y YGV G N+
Sbjct: 128 P----QPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNS--- 180
Query: 199 PYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGP 232
G G T + A TP G GH +QF P
Sbjct: 181 --GGGGLTAAAASA-TPFYPCG-GGHGGVQFSQP 210
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 101/242 (41%), Positives = 135/242 (55%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TKVFVGGLAWET ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF +PEAA+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 88 RACADPTPFIDGRRANCNLASLG--RPRPQV-LYGRLRPATLFSGSTQATRGPYIGSFG- 143
+AC DP P IDGRRANCNLA+ G R +P ++G + G P+ FG
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHV------GGRGMKVTSPFKTHFGT 116
Query: 144 ----YQQPLPYNYQQGMVYPS-YGYATYGPEYVYP-QGIYNPY----QQYVPIYGVPGTV 193
PLP+++ + Y + +G+++Y +Y YP Q YN Y Q+ P+YG
Sbjct: 117 AATAIPSPLPFSHYT-LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQH-PMYGSGPMT 174
Query: 194 NTAVYPYGQLGQTIPGSHAYTPVQGYG---MPGHQIMQFGGPNLNAITTSPLPTVQAPYP 250
A P + + PV GY P H + + P N + P AP P
Sbjct: 175 GVAAAPAAGFYPYLQFAEGNGPVTGYAPLHYPNH-MFHYSAPGGNYPHHNGSPVSLAPSP 233
Query: 251 TV 252
+
Sbjct: 234 VI 235
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 97/236 (41%), Positives = 121/236 (51%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N FGDT TKVFVGGLAW+T E M +F ++G+ILEAV+I+DK T RSKGYGFVTF+
Sbjct: 7 VNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGS 141
+ +AA RAC D TP I+GRRANCNLASLG GRLR + + Q GP G+
Sbjct: 67 DAKAATRACEDSTPIINGRRANCNLASLG--------GRLRKSPTMTSPQQ---GPKNGN 115
Query: 142 FGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPG-TVNTAV--- 197
P N+ Q YPS G+ + Q + P+ Y Y P T N V
Sbjct: 116 RA-TPPHVGNHSQ-WYYPS-GFTNQQHQQQNHQAV--PFYGYPSAYVAPNMTFNQKVGYV 170
Query: 198 ---YPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSPLPTVQAPYP 250
Y G Q P + Q Y H M +GG + SP+ YP
Sbjct: 171 GGTYMNGYYAQMQPQPQSQPQPQYY----HHHM-YGGGRVMVGAASPMVPFYTVYP 221
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 88/226 (38%), Positives = 119/226 (52%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 21 DTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAE 80
Query: 88 RACADPTPFIDGRRANCNLASLG-RPRPQVLYGRLRPATLFSGSTQATRGPYIG-SFGYQ 145
RAC DP P IDGR+AN NLA LG +PR P T +S Q I +G
Sbjct: 81 RACKDPNPIIDGRKANVNLAYLGAKPRS--------PLTGYSTGVQQVHPTLIQRQYGLS 132
Query: 146 QPLPYNY---QQGMVYPSYGYATYGPEYV-----YPQGIYNPYQQYVPIYGVPGTVNTAV 197
QP Y Q ++ P+ +T Y+ Y Q + ++QY P PG ++ +
Sbjct: 133 QPYVYPQAVLQPSLLLPTQVSSTSSSPYLDFSTAYAQYAASAFEQY-PYAASPGFLSY-M 190
Query: 198 YPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSPLP 243
YP G G P S TP+ G + P+ ++ TS P
Sbjct: 191 YPPGTAG---PSSAISTPIPNPLSTGEEPHPL--PSSRSLHTSSTP 231
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 84/214 (39%), Positives = 107/214 (50%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR---PQVLYG--RLRPATLFSGSTQATRGPYIGS 141
RAC DP P IDGR+AN NLA LG +PR P +G ++ PA F Y+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQIHPA--FIQRPYGIPTHYVYP 124
Query: 142 FGYQQP---LPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVY 198
+ QP +P+ + P+ AT Y+ G Y QY Y
Sbjct: 125 QAFMQPSVVIPH------IQPTATSATASSPYIDYTGA--AYAQYASAATAAAAAAYEQY 176
Query: 199 PYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGP 232
PY P + Y GYG Q + P
Sbjct: 177 PYA----ASPAATGYVAAAGYGYAMQQPLATAAP 206
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 88/226 (38%), Positives = 111/226 (49%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
++S DTTYTK+FVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT
Sbjct: 1 MHSSQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLG-RPR---PQVLYG--RLRPATLFS--GSTQA 133
+ AA RAC DP P IDGR+AN NLA LG +PR P +G ++ P L G ++
Sbjct: 61 DRSAAERACKDPNPIIDGRKANVNLAYLGAKPRILQPGFSFGVPQIHPTFLQRPYGDSED 120
Query: 134 TRGPYIGSFGYQQ----PLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPI-YG 188
P + ++Q P Y Y Q V PS P PY Y Y
Sbjct: 121 DHSPLLYPPPFRQVMRIPAHYVYPQAFVQPSVVIPHVQASSSSPAAAATPYLDYSSAAYA 180
Query: 189 VPGTVNTAVYPYGQLGQTI-PGSHA-YTPVQGYGMPGHQIMQFGGP 232
T A Y Q P + A Y G G G+ P
Sbjct: 181 QYTTAAAAAAAYEQYPYAASPAATAGYVTTAGTGY-GYMQQPLASP 225
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 85/223 (38%), Positives = 106/223 (47%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQA----TRGPYIGSFG 143
RAC DP P IDGR+AN NLA LG +P+++ +P F G Q + PY
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIM----QPGFAF-GVQQIHPALVQRPYGIPAH 120
Query: 144 YQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQL 203
Y P Y QQG+V P Y Y QY YPY
Sbjct: 121 YVYPQAY-VQQGLVIPHVQQTAAASTSPYIDYTSAAYAQYA----AAAAAAYDQYPYA-- 173
Query: 204 GQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSPLPTVQ 246
P + Y GYG Q + P A + Q
Sbjct: 174 --ASPATTGYVTAAGYGYAVPQPLTAATPGTAAAAAAAFAQYQ 214
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 84/214 (39%), Positives = 101/214 (47%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P+++ +P F G Q FG P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIM----QPGFAF-GVQQLHPALIQRPFGI--P 118
Query: 148 LPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPI----YGVPGTVNTAVYPYGQL 203
Y Y Q V P P PY Y Y A Y Q
Sbjct: 119 AHYVYPQAFVQPGVVIPHVQPTAAAAST--TPYIDYTGAAYAQYSAAAAAAAAAAAYDQY 176
Query: 204 GQTI-PGSHAYTPVQGYGMPGHQIMQFGGPNLNA 236
P + Y GYG Q + P A
Sbjct: 177 PYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAA 210
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 84/214 (39%), Positives = 101/214 (47%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 25 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 84
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P+++ +P F G Q FG P
Sbjct: 85 RACKDPNPIIDGRKANVNLAYLGA-KPRIM----QPGFAF-GVQQLHPALIQRPFGI--P 136
Query: 148 LPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPI----YGVPGTVNTAVYPYGQL 203
Y Y Q V P P PY Y Y A Y Q
Sbjct: 137 AHYVYPQAFVQPGVVIPHVQPAAAAAST--TPYIDYTGAAYAQYSAAAAAAAAAAAYDQY 194
Query: 204 GQTI-PGSHAYTPVQGYGMPGHQIMQFGGPNLNA 236
P + Y GYG Q + P A
Sbjct: 195 PYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAA 228
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 84/214 (39%), Positives = 101/214 (47%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P+++ +P F G Q FG P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIM----QPGFAF-GVQQLHPALIQRPFGI--P 118
Query: 148 LPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPI----YGVPGTVNTAVYPYGQL 203
Y Y Q V P P PY Y Y A Y Q
Sbjct: 119 AHYVYPQAFVQPGVVIPHVQPTAAAASTA--PYIDYTGAAYAQYSAAAAAAAAAAAYDQY 176
Query: 204 GQTI-PGSHAYTPVQGYGMPGHQIMQFGGPNLNA 236
P + Y GYG Q + P A
Sbjct: 177 PYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAA 210
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 81/207 (39%), Positives = 99/207 (47%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P+++ +P F G Q FG P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIM----QPGFAF-GVQQIHPALIQRPFGI--P 118
Query: 148 LPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQ--YVPIYGVPGTVNTAVYPYGQLGQ 205
Y Y Q V P P Y Y Y YPY
Sbjct: 119 AHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA---- 174
Query: 206 TIPGSHAYTPVQGYGMPGHQIMQFGGP 232
P + Y GYG Q + P
Sbjct: 175 ASPAATGYVTAAGYGYAVPQPLTAAAP 201
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 85/204 (41%), Positives = 107/204 (52%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR---PQVLYG--RLRPATLFSGSTQATRGPYIGS 141
RAC DP P IDGR+AN NLA LG +PR P +G ++ PA + Y+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALI--QRPFGIPAHYVYP 124
Query: 142 FGYQQP---LPYNYQQGMV----YPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGT-- 192
+ QP +P+ Q Y Y A Y +Y Y QY P P T
Sbjct: 125 HAFVQPGVVIPHVQQAAAASTSPYIDYTSAAYA-QYSAAAAAAAAYDQY-PYAASPATTG 182
Query: 193 -VNTAVYPYG---QLGQTIPGSHA 212
V TA Y Y L PG+ A
Sbjct: 183 YVTTAGYGYAVPQPLTAAAPGTAA 206
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 84/219 (38%), Positives = 109/219 (49%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DT +TK+FVGGL + T +T+ YFEQFG+I EAVVITD+NT +S+GYGFVT ++ +A
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 88 RACADPTPFIDGRRANCNLASLG-RPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQ 146
RAC DP P IDGR+AN NLA LG +PR V L + T + + G Q
Sbjct: 91 RACKDPNPIIDGRKANVNLAYLGAKPRTNVQLAALAAGQVQLPLTTQLQALFQPRMGLPQ 150
Query: 147 PLPYNYQQGMVYP---SYGYATYGPEYVYPQ--GIYNPYQQYVPIYGVPGTVNTAVYPYG 201
+ Y G+V P G A + Y + NP Q YG+ A P
Sbjct: 151 -MYYPTVTGLVNPLMAQQGAAAQQQLFDYNALAAVMNP--QAAAAYGIQSQGKFAAAP-- 205
Query: 202 QLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTS 240
TI AY P GYG+ G P L + +
Sbjct: 206 ---TTIEQYAAY-PA-GYGLVPQSAYNIGNPQLQQLAAA 239
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 84/219 (38%), Positives = 109/219 (49%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DT +TK+FVGGL + T +T+ YFEQFG+I EAVVITD+NT +S+GYGFVT ++ +A
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 88 RACADPTPFIDGRRANCNLASLG-RPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQ 146
RAC DP P IDGR+AN NLA LG +PR V L + T + + G Q
Sbjct: 91 RACKDPNPIIDGRKANVNLAYLGAKPRTNVQLAALAAGQVQLPLTTQLQALFQPRMGLPQ 150
Query: 147 PLPYNYQQGMVYP---SYGYATYGPEYVYPQ--GIYNPYQQYVPIYGVPGTVNTAVYPYG 201
+ Y G+V P G A + Y + NP Q YG+ A P
Sbjct: 151 -MYYPTVTGLVNPLMAQQGAAAQQQLFDYNALAAVMNP--QAAAAYGIQSQGKFAAAP-- 205
Query: 202 QLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTS 240
TI AY P GYG+ G P L + +
Sbjct: 206 ---TTIEQYAAY-PA-GYGLVPQSAYNIGNPQLQQLAAA 239
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 86/215 (40%), Positives = 106/215 (49%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 88 RACADPTPFIDGRRANCNLASLG-RPRPQVLYGRLRPATLFSGSTQATRG--P-YIGSFG 143
RAC DP P IDGR+AN NLA LG +PR + L Q T G P YI
Sbjct: 88 RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPA 147
Query: 144 YQQP---LPYNYQQGMVYPSYGYATYGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAVYP 199
QP +P + P Y P Y YP Y+ Y P P T T+
Sbjct: 148 IVQPSVVIPATPVPSLSSPYLEYTPASPAYAQYPPATYDQY----PYAASPATA-TSFVG 202
Query: 200 YGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNL 234
YG P A P G +Q+ P L
Sbjct: 203 YGYPAAIPPALSATAPA------GTTFVQYQAPQL 231
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 84/212 (39%), Positives = 101/212 (47%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P+++ +P F G Q FG P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIM----QPGFAF-GVQQLHPALIQRPFGI--P 118
Query: 148 LPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYV-PIYGVPGTVNTAV--YPYGQLG 204
Y Y Q V P P PY Y Y A YPY
Sbjct: 119 AHYVYPQAFVQPGVVIPHVQPAAAAAST--TPYIGYTGAAYAQYSAAAAAYEQYPYAASP 176
Query: 205 QTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNA 236
G Y GYG Q + P A
Sbjct: 177 AAAAG---YVAAGGYGYAVQQPITAAAPGTAA 205
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 82/214 (38%), Positives = 100/214 (46%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P+++ +P F G Q FG P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIM----QPGFAF-GVQQLHPALIQRPFGI--P 118
Query: 148 LPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPI----YGVPGTVNTAVYPYGQL 203
Y Y Q V P P PY Y Y A Y Q
Sbjct: 119 AHYVYPQAFVQPGVVIPHVQPTAAAAST--TPYIDYTGAAYAQYSAAAAAAAAAAAYDQY 176
Query: 204 GQTI-PGSHAYTPVQGYGMPGHQIMQFGGPNLNA 236
P + Y GY Q + P A
Sbjct: 177 PYAASPAAAGYVTTGGYSYAVQQPITAAAPGTAA 210
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 82/214 (38%), Positives = 100/214 (46%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P+++ +P F G Q FG P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIM----QPGFAF-GVQQLHPALIQRPFGI--P 118
Query: 148 LPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPI----YGVPGTVNTAVYPYGQL 203
Y Y Q V P P PY Y Y A Y Q
Sbjct: 119 AHYVYPQAFVQPGVVIPHVQPTAAAAST--TPYIDYTGAAYAQYSAAAAAAAAAAAYDQY 176
Query: 204 GQTI-PGSHAYTPVQGYGMPGHQIMQFGGPNLNA 236
P + Y GY Q + P A
Sbjct: 177 PYAASPAATGYVTTGGYSYAVQQPITAAAPGTAA 210
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 79/182 (43%), Positives = 97/182 (53%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 88 RACADPTPFIDGRRANCNLASLG-RPRPQVLYGRLRPATLFSGSTQATRG--P-YIGSFG 143
RAC DP P IDGR+AN NLA LG +PR + L Q T G P YI
Sbjct: 90 RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYIYPPA 149
Query: 144 YQQP---LPYNYQQGMVYPSYGYATYGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAV-Y 198
QP +P + P Y P Y YP Y+ Y P P T + V Y
Sbjct: 150 IVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQYPPATYDQY----PYAASPATAASFVGY 205
Query: 199 PY 200
Y
Sbjct: 206 SY 207
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 67/132 (50%), Positives = 83/132 (62%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RAC DP P IDGR+AN NLA LG +P+++ +P F G Q FG P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIM----QPGFAF-GVQQLHPALIQRPFGI--P 118
Query: 148 LPYNYQQGMVYP 159
Y Y Q V P
Sbjct: 119 AHYVYPQAFVQP 130
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 79/182 (43%), Positives = 97/182 (53%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 88 RACADPTPFIDGRRANCNLASLG-RPRPQVLYGRLRPATLFSGSTQATRG--P-YIGSFG 143
RAC DP P IDGR+AN NLA LG +PR + L Q T G P YI
Sbjct: 90 RACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYIYPQA 149
Query: 144 YQQP---LPYNYQQGMVYPSYGYATYGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAV-Y 198
QP +P + P Y P Y YP Y+ Y P P T + V Y
Sbjct: 150 IVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQYPPATYDQY----PYAASPATAASFVSY 205
Query: 199 PY 200
Y
Sbjct: 206 GY 207
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 79/183 (43%), Positives = 98/183 (53%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 88 RACADPTPFIDGRRANCNLASLG-RPRP-QVLYG---RLRPATLFSGSTQATRGPYIGSF 142
RAC DP P IDGR+AN NLA LG +PR Q + + P TL T YI
Sbjct: 90 RACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQVPPTLIQ-RTYGLTPHYIYPQ 148
Query: 143 GYQQP---LPYNYQQGMVYPSYGYATYGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAV- 197
QP +P + P Y P Y YP Y+ Y P P T + V
Sbjct: 149 AIVQPSVVIPAAPVPPLSSPYIEYTPASPAYAQYPPATYDQY----PYAASPATAASFVG 204
Query: 198 YPY 200
Y Y
Sbjct: 205 YSY 207
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 78/177 (44%), Positives = 98/177 (55%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGS-FGYQQ 146
RAC DP P IDGR+AN NLA LG +P+ + T F+ Q +I FG
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRSIQ------TGFTIGVQQLHPAFIQRPFGLT- 118
Query: 147 PLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVY---PY 200
P Y Y Q ++ PS T P Q I +PY Y TA Y PY
Sbjct: 119 P-HYVYPQAIIQPSVVIPT--PV----QSIASPYIDYTAASQAYSQYTTAAYDQYPY 168
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 73/161 (45%), Positives = 90/161 (55%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 88 RACADPTPFIDGRRANCNLASLG-RPRPQVLYGRLRPATLFSGSTQATRG--P-YIGSFG 143
RAC DP P IDGR+AN NLA LG +PR + L Q T G P YI
Sbjct: 88 RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPA 147
Query: 144 YQQP---LPYNYQQGMVYPSYGYATYGPEYV-YPQGIYNPY 180
QP +P + P Y P Y YP Y+ Y
Sbjct: 148 IVQPSVVIPATPVPSLSSPYLEYTPASPAYAQYPPATYDQY 188
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 51/83 (61%), Positives = 66/83 (79%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DT YTK++VGGL WET++E +R YFEQFG+I+ ++ D+ TGRS+GYGFVTFR+ E+A
Sbjct: 48 DTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESAT 107
Query: 88 RACADPTPFIDGRRANCNLASLG 110
RAC +P P IDGR A CNLA +G
Sbjct: 108 RACQNPKPVIDGREAKCNLAYIG 130
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 55/87 (63%), Positives = 68/87 (78%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR 113
RAC DP P IDGR+AN NLA LG +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 55/87 (63%), Positives = 68/87 (78%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR 113
RAC DP P IDGR+AN NLA LG +PR
Sbjct: 90 RACKDPNPNIDGRKANVNLAYLGAKPR 116
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 45/83 (54%), Positives = 62/83 (74%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTT+TK++VGGL W T+ E + +F++FGEI+ V+ D+ T RS+GYGFVTF++ E+A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 88 RACADPTPFIDGRRANCNLASLG 110
RAC DP P I+GR NC LA +G
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVG 91
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 62/155 (40%), Positives = 85/155 (54%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DT TK+FVG L W T ++ +RRYFEQFG++++A V+++ GRSKGYGF+TFR+ +
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
RA + P IDGR NCNLAS G + + L +GS P+ Q
Sbjct: 68 RALQNSKPIIDGRTTNCNLASAGAKQ------NMNHPNL-NGSFNYVIPPHQYQQAPQHV 120
Query: 148 LPY--NYQQGMVYPSYGYA-TYGPEYVYP-QGIYN 178
+PY + V+ Y Y P Y YP Q I+N
Sbjct: 121 IPYCPPHTWNHVWGQYIYMYNNNPCYYYPTQMIHN 155
>UNIPROTKB|E2RM01 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:AAEX03017572 EMBL:AAEX03017571
Ensembl:ENSCAFT00000015807 Uniprot:E2RM01
Length = 116
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 54/105 (51%), Positives = 65/105 (61%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
DTTYTK+FVGGL + T ++R+YFE FGEI EAVVIT VT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITXXXXXXXXXVAKVTMADRAAAE 66
Query: 88 RACADPTPFIDGRRANCNLASLG-RPR---PQVLYG--RLRPATL 126
RAC DP P IDGR+AN NLA LG +PR P +G +L PA +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALI 111
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 46/79 (58%), Positives = 57/79 (72%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
TK++V GL W T++E + YFE+FGEI+ A V+ D T RSKG+GFVTFRE E+A RAC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 92 DPTPFIDGRRANCNLASLG 110
+P IDGR NC LA LG
Sbjct: 69 NPNHTIDGRTVNCKLAYLG 87
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 183 (69.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+NS D K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F+
Sbjct: 1 MNSAGADEI-GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 82 EPEAARRACADPTPFIDGR 100
+P A +DGR
Sbjct: 60 DPNCVGTVLASRPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 65/238 (27%), Positives = 95/238 (39%)
Query: 25 PFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
P D++ + K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF +
Sbjct: 104 PRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 163
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++ +A I G++ A PR +P GS A G G
Sbjct: 164 QSVDQAVNMHFHDIMGKKVEVKRAE---PRDSKNQAPGQPGASQWGSRVAPSAAN-GWAG 219
Query: 144 YQQPL-PYNY-QQGMVYPSYGYAT--YGPEYVYPQGIYNP---YQQYVPIYGVPGTVNTA 196
P Y QGM P+ G A YGP +G P + Y+ + PG
Sbjct: 220 QPPPTWQQGYGPQGMWVPA-GQAIGGYGPPPA-GRGAPPPPPPFTSYI-VSTPPGGFPP- 275
Query: 197 VYPYG-QLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSP--LPTVQAPYPT 251
P G G P ++ GYG P QF P + +P P P P+
Sbjct: 276 --PQGFPQGYGAPPQFSF----GYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPS 327
Score = 68 (29.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 34/109 (31%), Positives = 40/109 (36%)
Query: 129 GSTQATRGPYIGSFGYQQPLPYNYQ---QGMVYPSYGYATYGPEYVYPQGIYNPYQQYVP 185
G Q P SFGY P P Q G+ P AT G P P Q P
Sbjct: 278 GFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPP---ATPGAA---PLAFPPPPSQAAP 331
Query: 186 IYGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNL 234
P T +PYGQ G G QG+ P Q +GGP++
Sbjct: 332 DMSKPPTAQPD-FPYGQYGY---GQDLSGFGQGFSDPSQQPPSYGGPSV 376
Score = 55 (24.4 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 20/63 (31%), Positives = 26/63 (41%)
Query: 158 YPSYGYATYGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLG------QTIPGS 210
+P YG YG + + QG +P QQ P YG P + P G G + G
Sbjct: 343 FP-YGQYGYGQDLSGFGQGFSDPSQQ-PPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGF 400
Query: 211 HAY 213
H Y
Sbjct: 401 HPY 403
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 183 (69.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+NS D K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F+
Sbjct: 1 MNSAGADEI-GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 82 EPEAARRACADPTPFIDGR 100
+P A +DGR
Sbjct: 60 DPNCVGTVLASRPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 65/238 (27%), Positives = 95/238 (39%)
Query: 25 PFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
P D++ + K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF +
Sbjct: 105 PRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 164
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++ +A I G++ A PR +P GS A G G
Sbjct: 165 QSVDQAVNMHFHDIMGKKVEVKRAE---PRDSKNQAPGQPGASQWGSRVAPSAAN-GWAG 220
Query: 144 YQQPL-PYNY-QQGMVYPSYGYAT--YGPEYVYPQGIYNP---YQQYVPIYGVPGTVNTA 196
P Y QGM P+ G A YGP +G P + Y+ + PG
Sbjct: 221 QPPPTWQQGYGPQGMWVPA-GQAIGGYGPPPA-GRGAPPPPPPFTSYI-VSTPPGGFPP- 276
Query: 197 VYPYG-QLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSP--LPTVQAPYPT 251
P G G P ++ GYG P QF P + +P P P P+
Sbjct: 277 --PQGFPQGYGAPPQFSF----GYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPS 328
Score = 68 (29.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 34/109 (31%), Positives = 40/109 (36%)
Query: 129 GSTQATRGPYIGSFGYQQPLPYNYQ---QGMVYPSYGYATYGPEYVYPQGIYNPYQQYVP 185
G Q P SFGY P P Q G+ P AT G P P Q P
Sbjct: 279 GFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPP---ATPGAA---PLAFPPPPSQAAP 332
Query: 186 IYGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNL 234
P T +PYGQ G G QG+ P Q +GGP++
Sbjct: 333 DMSKPPTAQPD-FPYGQYGY---GQDLSGFGQGFSDPSQQPPSYGGPSV 377
Score = 55 (24.4 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 20/63 (31%), Positives = 26/63 (41%)
Query: 158 YPSYGYATYGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLG------QTIPGS 210
+P YG YG + + QG +P QQ P YG P + P G G + G
Sbjct: 344 FP-YGQYGYGQDLSGFGQGFSDPSQQ-PPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGF 401
Query: 211 HAY 213
H Y
Sbjct: 402 HPY 404
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 183 (69.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+NS D K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F+
Sbjct: 1 MNSAGADEI-GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 82 EPEAARRACADPTPFIDGR 100
+P A +DGR
Sbjct: 60 DPNCVGTVLASRPHTLDGR 78
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 65/238 (27%), Positives = 95/238 (39%)
Query: 25 PFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
P D++ + K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF +
Sbjct: 105 PRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 164
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++ +A I G++ A PR +P GS A G G
Sbjct: 165 QSVDQAVNMHFHDIMGKKVEVKRAE---PRDSKNQAPGQPGASQWGSRVAPSAAN-GWAG 220
Query: 144 YQQPL-PYNY-QQGMVYPSYGYAT--YGPEYVYPQGIYNP---YQQYVPIYGVPGTVNTA 196
P Y QGM P+ G A YGP +G P + Y+ + PG
Sbjct: 221 QPPPTWQQGYGPQGMWVPA-GQAIGGYGPPPA-GRGAPPPPPPFTSYI-VSTPPGGFPP- 276
Query: 197 VYPYG-QLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSP--LPTVQAPYPT 251
P G G P ++ GYG P QF P + +P P P P+
Sbjct: 277 --PQGFPQGYGAPPQFSF----GYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPS 328
Score = 68 (29.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 34/109 (31%), Positives = 40/109 (36%)
Query: 129 GSTQATRGPYIGSFGYQQPLPYNYQ---QGMVYPSYGYATYGPEYVYPQGIYNPYQQYVP 185
G Q P SFGY P P Q G+ P AT G P P Q P
Sbjct: 279 GFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPP---ATPGAA---PLAFPPPPSQAAP 332
Query: 186 IYGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNL 234
P T +PYGQ G G QG+ P Q +GGP++
Sbjct: 333 DMSKPPTAQPD-FPYGQYGY---GQDLSGFGQGFSDPSQQPPSYGGPSV 377
Score = 55 (24.4 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 20/63 (31%), Positives = 26/63 (41%)
Query: 158 YPSYGYATYGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLG------QTIPGS 210
+P YG YG + + QG +P QQ P YG P + P G G + G
Sbjct: 344 FP-YGQYGYGQDLSGFGQGFSDPSQQ-PPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGF 401
Query: 211 HAY 213
H Y
Sbjct: 402 HPY 404
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 175 (66.7 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F++ + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 93 PTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DGR + A + P ++ G L P +T+ Y G FG
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYFGEFG 108
Score = 155 (59.6 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 57/178 (32%), Positives = 78/178 (43%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF +FGEI EA+ + D + + +G+ F+TF+E E ++
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
I G + C L +G P + + + RG G Q +N
Sbjct: 144 KKFHTISGSK-RCGLG-VGLPLQLMTQRWFLSVSRCERDKKGNRGSGGGGGSGSQSQSWN 201
Query: 152 YQQGMVY-PSYGYAT-YGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQT 206
G + YGY YGP Y Y Y+PY Y YG PG Y Y Q G T
Sbjct: 202 QGYGNYWNQGYGYQQGYGPGYGGYD---YSPYGYYG--YG-PG------YDYSQ-GST 246
Score = 78 (32.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 142 FGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN 178
+GYQQ Y G Y YGY YGP Y Y QG N
Sbjct: 212 YGYQQGYGPGYG-GYDYSPYGYYGYGPGYDYSQGSTN 247
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 182 (69.1 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F++P A
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 125 (49.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 64/238 (26%), Positives = 93/238 (39%)
Query: 25 PFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
P D + + K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF +
Sbjct: 105 PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 164
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++ +A I G++ A PR +P GS G G
Sbjct: 165 QSVDQAVNMHFHDIMGKKVEVKRAE---PRDSKSQAPGQPGASQWGSRVVPNAAN-GWAG 220
Query: 144 YQQPL-PYNY-QQGMVYPSYGYAT--YGPEYVYPQGIYNP---YQQYVPIYGVPGTVNTA 196
P Y QGM P+ G A YGP +G P + Y+ + PG
Sbjct: 221 QPPPTWQQGYGPQGMWVPA-GQAIGGYGPPPA-GRGAPPPPPPFTSYI-VSTPPGGFPP- 276
Query: 197 VYPYG-QLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSP--LPTVQAPYPT 251
P G G P ++ GYG P QF P + +P P P P+
Sbjct: 277 --PQGFPQGYGAPPQFSF----GYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPS 328
Score = 66 (28.3 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 35/112 (31%), Positives = 42/112 (37%)
Query: 129 GSTQATRGPYIGSFGYQQPLPYNYQ---QGMVYPSYGYATYGPEYVYPQGIYNPYQQYVP 185
G Q P SFGY P P Q G+ P AT G P P Q P
Sbjct: 279 GFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPP---ATPGAA---PLAFPPPPSQAAP 332
Query: 186 IYGVPGTVNTAVYPYGQL---GQTIPGSHAYTPVQGYGMPGHQIMQFGGPNL 234
P T +PYGQ GQ + G QG+ P Q +GGP++
Sbjct: 333 DMSKPPTAQPD-FPYGQYAGYGQDLSGFG-----QGFSDPSQQPPSYGGPSV 378
Score = 60 (26.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 158 YPSYG-YATYGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLG------QTIPG 209
+P YG YA YG + + QG +P QQ P YG P + P G G + G
Sbjct: 344 FP-YGQYAGYGQDLSGFGQGFSDPSQQ-PPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 401
Query: 210 SHAY 213
H Y
Sbjct: 402 FHPY 405
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 182 (69.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F++P A
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 61 RPHTLDGR 68
Score = 125 (49.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 64/238 (26%), Positives = 93/238 (39%)
Query: 25 PFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
P D + + K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF +
Sbjct: 95 PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 154
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++ +A I G++ A PR +P GS G G
Sbjct: 155 QSVDQAVNMHFHDIMGKKVEVKRAE---PRDSKSQAPGQPGASQWGSRVVPNAAN-GWAG 210
Query: 144 YQQPL-PYNY-QQGMVYPSYGYAT--YGPEYVYPQGIYNP---YQQYVPIYGVPGTVNTA 196
P Y QGM P+ G A YGP +G P + Y+ + PG
Sbjct: 211 QPPPTWQQGYGPQGMWVPA-GQAIGGYGPPPA-GRGAPPPPPPFTSYI-VSTPPGGFPP- 266
Query: 197 VYPYG-QLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSP--LPTVQAPYPT 251
P G G P ++ GYG P QF P + +P P P P+
Sbjct: 267 --PQGFPQGYGAPPQFSF----GYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPS 318
Score = 65 (27.9 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 33/109 (30%), Positives = 40/109 (36%)
Query: 129 GSTQATRGPYIGSFGYQQPLPYNYQ---QGMVYPSYGYATYGPEYVYPQGIYNPYQQYVP 185
G Q P SFGY P P Q G+ P AT G P P Q P
Sbjct: 269 GFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPP---ATPGAA---PLAFPPPPSQAAP 322
Query: 186 IYGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNL 234
P T +PY Q G G + QG+ P Q +GGP++
Sbjct: 323 DMSKPPTAQPD-FPYSQYGY---GQDLASFGQGFSDPSQQPPSYGGPSV 367
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 182 (69.1 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F++P A
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 125 (49.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 64/238 (26%), Positives = 93/238 (39%)
Query: 25 PFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
P D + + K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF +
Sbjct: 105 PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 164
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++ +A I G++ A PR +P GS G G
Sbjct: 165 QSVDQAVNMHFHDIMGKKVEVKRAE---PRDSKSQAPGQPGASQWGSRVVPNAAN-GWAG 220
Query: 144 YQQPL-PYNY-QQGMVYPSYGYAT--YGPEYVYPQGIYNP---YQQYVPIYGVPGTVNTA 196
P Y QGM P+ G A YGP +G P + Y+ + PG
Sbjct: 221 QPPPTWQQGYGPQGMWVPA-GQAIGGYGPPPA-GRGAPPPPPPFTSYI-VSTPPGGFPP- 276
Query: 197 VYPYG-QLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSP--LPTVQAPYPT 251
P G G P ++ GYG P QF P + +P P P P+
Sbjct: 277 --PQGFPQGYGAPPQFSF----GYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPS 328
Score = 62 (26.9 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 33/109 (30%), Positives = 39/109 (35%)
Query: 129 GSTQATRGPYIGSFGYQQPLPYNYQ---QGMVYPSYGYATYGPEYVYPQGIYNPYQQYVP 185
G Q P SFGY P P Q G+ P AT G P P Q P
Sbjct: 279 GFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPP---ATPGAA---PLAFPPPPSQAAP 332
Query: 186 IYGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNL 234
P T +PY Q G G QG+ P Q +GGP++
Sbjct: 333 DMSKPPTAQPD-FPYSQYGY---GQDLAGFGQGFSDPSQQPPSYGGPSV 377
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 182 (69.1 bits), Expect = 8.6e-18, Sum P(2) = 8.6e-18
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F++P A
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 125 (49.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 64/238 (26%), Positives = 93/238 (39%)
Query: 25 PFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
P D + + K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF +
Sbjct: 105 PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 164
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++ +A I G++ A PR +P GS G G
Sbjct: 165 QSVDQAVNMHFHDIMGKKVEVKRAE---PRDSKSQAPGQPGASQWGSRVVPNAAN-GWAG 220
Query: 144 YQQPL-PYNY-QQGMVYPSYGYAT--YGPEYVYPQGIYNP---YQQYVPIYGVPGTVNTA 196
P Y QGM P+ G A YGP +G P + Y+ + PG
Sbjct: 221 QPPPTWQQGYGPQGMWVPA-GQAIGGYGPPPA-GRGAPPPPPPFTSYI-VSTPPGGFPP- 276
Query: 197 VYPYG-QLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSP--LPTVQAPYPT 251
P G G P ++ GYG P QF P + +P P P P+
Sbjct: 277 --PQGFPQGYGAPPQFSF----GYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPS 328
Score = 61 (26.5 bits), Expect = 8.6e-18, Sum P(2) = 8.6e-18
Identities = 20/63 (31%), Positives = 26/63 (41%)
Query: 158 YPSYGYATYGPEYV-YPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLG------QTIPGS 210
+P YA YG + + QG +P QQ P YG P + P G G + G
Sbjct: 344 FPYSQYAGYGQDLAGFGQGFSDPSQQ-PPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGF 402
Query: 211 HAY 213
H Y
Sbjct: 403 HPY 405
Score = 60 (26.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 34/112 (30%), Positives = 41/112 (36%)
Query: 129 GSTQATRGPYIGSFGYQQPLPYNYQ---QGMVYPSYGYATYGPEYVYPQGIYNPYQQYVP 185
G Q P SFGY P P Q G+ P AT G P P Q P
Sbjct: 279 GFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPP---ATPGAA---PLAFPPPPSQAAP 332
Query: 186 IYGVPGTVNTAVYPYGQL---GQTIPGSHAYTPVQGYGMPGHQIMQFGGPNL 234
P T +PY Q GQ + G QG+ P Q +GGP++
Sbjct: 333 DMSKPPTAQPD-FPYSQYAGYGQDLAGFG-----QGFSDPSQQPPSYGGPSV 378
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 190 (71.9 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 47/141 (33%), Positives = 73/141 (51%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ GD K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F+
Sbjct: 1 MNNQGGDEI-GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 82 EPEAARRACADPTPFIDGRRAN---CNLASLG--RPRPQVLYGRLRPATLFSGSTQATRG 136
+P A +DGR + C + R RP+ + + P T S S + G
Sbjct: 60 DPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVG 119
Query: 137 PYIGSFGYQQPLPYNYQQGMV 157
+ G + Y + G+V
Sbjct: 120 GIPHNCGETELKEYFNRFGVV 140
Score = 134 (52.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 57/194 (29%), Positives = 82/194 (42%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGG+ ++ YF +FG + E V+I D R +G+GF+TF + ++ +A
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGST--QATRGPYIGSFGYQQPLPY 150
I G++ A PR P + GS Q+T + G QP P
Sbjct: 175 HFHDIMGKKVEVKRAE---PRDSKSQTPGPPGSNQWGSRAMQSTANGWTG-----QP-PQ 225
Query: 151 NYQ----QGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQT 206
+Q QGM P+ G G Y P G P P + P V+T P+ Q
Sbjct: 226 TWQGYSPQGMWMPT-GQTIGG--YGQPAGRGGPPPP--PSFA-PFLVSTTPGPFPP-PQG 278
Query: 207 IPGSHAYTPVQGYG 220
P +A P GYG
Sbjct: 279 FPPGYATPPPFGYG 292
Score = 46 (21.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 22/79 (27%), Positives = 27/79 (34%)
Query: 147 PLPYNYQQGMVYPS-YGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPY-GQLG 204
P P + G P +GY YGP P + P G PG A P GQ
Sbjct: 274 PPPQGFPPGYATPPPFGYG-YGPPPPPPDQFVS--SGVPPPPGTPGAAPLAFPPPPGQSA 330
Query: 205 QTI---PGSHAYTPVQGYG 220
Q + P P +G
Sbjct: 331 QDLSKPPSGQQDFPFSQFG 349
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 182 (69.1 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F++P A
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 61 RPHTLDGR 68
Score = 120 (47.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF + ++ +A
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 160
Score = 53 (23.7 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 26/108 (24%), Positives = 36/108 (33%)
Query: 134 TRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTV 193
T P+ +G P P + V P P +P P Q P T
Sbjct: 276 TPPPFTFGYGAPPPPPDQFAPPGVPPPPATPGAAP-LAFPPP--PPPSQATQDMSKPPTA 332
Query: 194 NTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSP 241
+PY Q G G QG+ P Q +GGP++ + P
Sbjct: 333 QPE-FPYSQFGY---GQDLSGFGQGFSDPSQQPPPYGGPSVQPSSGPP 376
Score = 50 (22.7 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 21/68 (30%), Positives = 27/68 (39%)
Query: 173 PQGIYNPYQQYVPIYGVPGTVNTAVYP----YGQLGQTIPGSHAYTPVQG----YGMPGH 224
PQG++ P Q + YG P A P + T PG + P QG YG P
Sbjct: 222 PQGMWVPAGQAIGGYGPPPPGRGAPPPPPPFASYIVSTPPGG--FPPPQGFPQGYGTPPP 279
Query: 225 QIMQFGGP 232
+G P
Sbjct: 280 FTFGYGAP 287
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 182 (69.1 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D + K+FV GL W+T+++++ F+Q+GEI + + DK +G+SKGYGF+ F+ AR
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 88 RACADPTPFIDGRRANCNLASLG 110
A P I R C LAS+G
Sbjct: 184 NALKQPQKKIGTRMTACQLASIG 206
Score = 124 (48.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K++V ++ + + + +F +FGEI E + DK TGR KG+ +R E+A++A +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 93 PTPFIDGRRANCNLASLG 110
P +G +C+ A+ G
Sbjct: 288 PHKTFEGHVLHCHKANDG 305
Score = 55 (24.4 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 187 YGVPGTVNTAVYP-YGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGP 232
YG ++ VYP YG G P QG G +GGP
Sbjct: 401 YGTQANISPGVYPGYGAQAGYQGGYQTQQPGQGGAGRGQHGAGYGGP 447
Score = 41 (19.5 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 190 PGTVNTAVYPYGQLGQTIPGSH-AYTPVQGYGMPGHQIMQFG 230
PG V YG PG + Y GY G+Q Q G
Sbjct: 391 PGAVGGMPSGYGTQANISPGVYPGYGAQAGY-QGGYQTQQPG 431
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 191 (72.3 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 37/101 (36%), Positives = 62/101 (61%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T E++R YF ++G+I EA+V+ D T RS+G+GFVTF +P + +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQA 133
T +DG++ + +A R P+++ R +F G A
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMV---TRTKKIFVGGLSA 127
Score = 171 (65.3 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 62/223 (27%), Positives = 96/223 (43%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG I +A+++ DK T R +G+GFVTF+ + +
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A +P+ +L PA L + + A R Y L
Sbjct: 175 VCEIHFHEINNKMVECKKA---QPKEVML-----PANL-AKTRAAGRSAYDNIMWGLGTL 225
Query: 149 PYNYQQGMVYPSY----GYATYGPEYVYPQGIYNPYQ-QYVPIYGVPGTVNTAVYPYGQL 203
P + Y +Y GY+ Y P + P + Q P P + A+
Sbjct: 226 PEGFPAA-AYAAYAAGRGYSGY-PSFGLPYPTVDLTNGQLTPNNNTP-LLTQALSVMNNY 282
Query: 204 GQTIPGSHAYTP-VQGYGMPGHQIMQFGGPNLNAITTSPLPTV 245
+H+Y P + + + G P+ N SP PT+
Sbjct: 283 QAAAAAAHSYGPSASPHAAAANTATRQGFPSTN----SPGPTI 321
Score = 37 (18.1 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 19/98 (19%), Positives = 29/98 (29%)
Query: 158 YPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQ 217
+P+ YA Y +G Y+ Y + Y N + P Q
Sbjct: 229 FPAAAYAAYAAG----RG-YSGYPSFGLPYPTVDLTNGQLTPNNNTPLLTQALSVMNNYQ 283
Query: 218 GYGMPGHQIMQFGGPNL---NAITTSPLPTVQAPYPTV 252
H P+ N T P+ +P PT+
Sbjct: 284 AAAAAAHSYGPSASPHAAAANTATRQGFPSTNSPGPTI 321
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 184 (69.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 36/101 (35%), Positives = 60/101 (59%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF +P + +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQA 133
P +D + + +A R +P+++ R +F G A
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMV---TRTKKIFVGGLSA 119
Score = 181 (68.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 64/206 (31%), Positives = 92/206 (44%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 89 ACADPTPFIDGRRANCNLASLGRPR-PQVLYGRLR--PATLFSGSTQATRGPYIGSFGYQ 145
C I+ + C A P GR R P T+ + G +G GY
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFML----G--MGMLGYP 220
Query: 146 QPLPYNYQQGM--VYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQL 203
+ Y +G PSYGY G +P Y P + G+ + P G
Sbjct: 221 NFVA-TYGRGYPGFAPSYGYQFPG----FPAAAYGPVAA-AAVAAARGSGSNPARPGGFP 274
Query: 204 GQTIPGSHA--YTPV-QGYGMPGHQI 226
G PG A Y P Q G+ G+ I
Sbjct: 275 GANSPGPVADLYGPASQDSGV-GNYI 299
Score = 41 (19.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 188 GVPGTVNTAVYPYGQLGQ-----TIP-GSHAYTPVQGYGMPGHQIMQFG 230
G+P T++ + G LG T G + P GY PG +G
Sbjct: 202 GLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYG 250
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 186 (70.5 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D + K+FV GL W+T++ET+ F+Q+GEI + + DK +G+SKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 88 RACADPTPFIDGRRANCNLASLG 110
A P I R C LAS G
Sbjct: 196 NALKQPQKKIGSRMTACQLASKG 218
Score = 132 (51.5 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 31/95 (32%), Positives = 50/95 (52%)
Query: 20 QYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 79
Q+ NS + T K++V + E + + +F +FGEI E + DK TGR KG+
Sbjct: 236 QHSNS---EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFV 292
Query: 80 FREPEAARRACADPTPFIDGRRANCNLASLGRPRP 114
++ E+A+RA +P +G +C A G P+P
Sbjct: 293 YKSSESAKRALEEPHKTFEGHILHCQKAIDG-PKP 326
Score = 47 (21.6 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 31/109 (28%), Positives = 37/109 (33%)
Query: 105 NLASLGRPRPQVL---YGRLRPATLFSGSTQATRGPYIGS--FG-YQQPLPYNYQQGMVY 158
N A +G P QV+ G+ A L S P IG G N G+
Sbjct: 365 NPAGMGGPTAQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLGTAAGVNPGNGVGM 424
Query: 159 PSYGYATYG------PEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYG 201
P+ GY T P Y G+ YQ P G V PYG
Sbjct: 425 PT-GYGTQAMAPGTMPGYGTQPGLQGGYQTPQPGQGGTSRGQHGVGPYG 472
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 187 (70.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 66/217 (30%), Positives = 98/217 (45%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 89 ACADPTPFIDGRRANCNLASLGRPR-PQVLYGRLR--PATLFS---GSTQATRGPYIGSF 142
C I+ + C A P GR R P T+ + G ++ ++
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY 226
Query: 143 GYQQP--LP-YNYQQGMVYPSYGYATYGP----EYVYPQG-IYNPYQQYVPIYGVPGTV- 193
G P P Y YQ +P + A YGP +G + N Y P +G P +
Sbjct: 227 GRGYPGFAPSYGYQ----FPGFPAAAYGPVAAAAVAAARGSVLNSYSAQ-PNFGAPASPA 281
Query: 194 -NTAVYPYGQLGQTIPGSHA--YTPV-QGYGMPGHQI 226
+ P G G PG A Y P Q G+ G+ I
Sbjct: 282 GSNPARPGGFPGANSPGPVADLYGPASQDSGV-GNYI 317
Score = 184 (69.8 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 36/101 (35%), Positives = 60/101 (59%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF +P + +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQA 133
P +D + + +A R +P+++ R +F G A
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMV---TRTKKIFVGGLSA 119
Score = 41 (19.5 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 188 GVPGTVNTAVYPYGQLGQ-----TIP-GSHAYTPVQGYGMPGHQIMQFG 230
G+P T++ + G LG T G + P GY PG +G
Sbjct: 202 GLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYG 250
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 204 (76.9 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 51/148 (34%), Positives = 73/148 (49%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D T+ K+FV GL WET ET+ FE +GEI E V+ DK TG++KG+GFV F+ + A+
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGST--------QATRGPYI 139
A +P I R A C LAS+G + + P + GS Q +G ++
Sbjct: 160 EALKEPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMANHGQPQQQQVQGQHV 219
Query: 140 GSFGYQQPLPYNYQQGMVYPSYGYATYG 167
+ G P+ +P YG G
Sbjct: 220 FNGGGMAASPFMLGN-QYHPLYGAGMLG 246
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 199 (75.1 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+E ++ R
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 93 PTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DGR+ + A + P ++ G L P T T+ Y GSFG
Sbjct: 106 KEHRLDGRQIDPKRAMAIKKEPVKKIFVGGLNPET-----TEEKIREYFGSFG 153
Score = 149 (57.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 57/193 (29%), Positives = 80/193 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL ET E +R YF FGEI + TD T + +G+ F+TF+E A ++
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
+ G + +A Q +G F G + GP G + Q +
Sbjct: 190 KYHNVCGSKCEIKIAQPKEIYQQQQFGARGGG--FGGRGRGRGGP--GQ-SWNQGYNNYW 244
Query: 153 QQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGSHA 212
QG Y GY YG + Y G Y Y Y G G + Y Y G S+
Sbjct: 245 NQG--YGGQGYG-YGGQQGY--GGYGGYGNYDYSSGYYGYGSG--YDYTDQGAA---SYG 294
Query: 213 YTPVQGYGMPGHQ 225
TP +G G++
Sbjct: 295 KTPRRGGHQSGYK 307
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 202 (76.2 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 41/119 (34%), Positives = 65/119 (54%)
Query: 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAA 86
G+ K+FVGGL+W+T + ++ YF +FGE+ + + D NTGRS+G+GF+ F+EP
Sbjct: 90 GEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGV 149
Query: 87 RRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYIGSFG 143
+ A +DGR+ + A + P ++ G L P T T+ Y G+FG
Sbjct: 150 DKVLAQKEHRLDGRQIDPKKAMAMKKEPVKKIFVGGLNPET-----TEERIREYFGAFG 203
Score = 163 (62.4 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 57/189 (30%), Positives = 81/189 (42%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL ET E +R YF FGEI + D + + +G+ F+TF+E EA ++
Sbjct: 180 KIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEK 239
Query: 93 PTPFIDGRRANCN---LASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLP 149
+ G + L + +P+ +Y + + F G + RG G G
Sbjct: 240 KYHNVSGTKDTSGKEGLCEIKIAQPKEVYQQQQYGGRFGGGGRG-RGR--GGQGQNWNQG 296
Query: 150 YNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPG 209
YN Y + GY YG + Y G Y Y Y G G Y Y Q G T
Sbjct: 297 YNNYWNQGYGNQGYGGYGGQQGY--GGYGGYGNYDYSGGYYGGYGG--YDYNQ-GNT--- 348
Query: 210 SHAYTPVQG 218
S+ TP +G
Sbjct: 349 SYGKTPRRG 357
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 200 (75.5 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 66/219 (30%), Positives = 101/219 (46%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D++ +FV GL W+T E ++ FE +GEI E V+ DK+TGR+KG+GFV F+ + AR
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 88 RACADPTPFIDGRRANCNLA---SLGRPRPQ---VLYGRLRPATLFSGSTQATRGPYIG- 140
A +P + R +C A + G+PR Q V ++ + + S A G +G
Sbjct: 219 AALKNPEKRMYNRTVSCLPARPFNSGKPREQQQPVESVKIDLSHTGNQSEMALPGIDLGH 278
Query: 141 --SFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVY 198
G+QQ + G P YG++ P P G +NP Y + G P + +
Sbjct: 279 GLDKGHQQQQNMSMYAGQNMPFYGHSQ--P----PPG-FNP--MYGAMMGNP--MVAGLQ 327
Query: 199 PYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAI 237
Y G + P GM G + G N+N +
Sbjct: 328 NYRMFGSGMMNQGPMMPPNHMGMVGQYV---GDGNVNGV 363
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 180 (68.4 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 36/101 (35%), Positives = 60/101 (59%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF + + + A
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQA 133
P +D + + +A R +P+++ R +F G A
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMV---TRTKKIFVGGLSA 119
Score = 173 (66.0 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/198 (28%), Positives = 89/198 (44%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRG-PY-IGSFGYQQ 146
C I+ + C A +P+ +V++ P G+ RG PY + +F
Sbjct: 167 VCEIHFHEINNKMVECKKA---QPK-EVMF----PP----GTRGRARGLPYTMDAFMLGM 214
Query: 147 PLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQT 206
+ +Y + GY + P Y Y + P Y P+ G G+
Sbjct: 215 GM-LSYPNIVATYGRGYTGFAPSYSYQFPGF-PATAYGPVAAAAAVAAARGSGRGARGRG 272
Query: 207 IPGSHAYTPVQGYGMPGH 224
G AY G G P +
Sbjct: 273 --GYAAYPQSTGPGFPDY 288
Score = 45 (20.9 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 34/141 (24%), Positives = 46/141 (32%)
Query: 114 PQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYP 173
P YG + A + + + RG G GY Y G +P YG+ Y P
Sbjct: 245 PATAYGPVAAAAAVAAARGSGRGAR-GRGGYAA---YPQSTGPGFPDYGF------YSSP 294
Query: 174 QGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGSHAYT----PVQGYGMPGHQIMQF 229
P + YG G P Q Q + HA + P+Q P Q+
Sbjct: 295 SDQRGPPFSFAD-YGSLG-------P--QAAQLLQSEHATSACNSPLQHLASPD----QY 340
Query: 230 GGPNLNAITTSPLPTVQAPYP 250
P N P +P P
Sbjct: 341 KSPGTNPPRPGAFPGASSPGP 361
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 198 (74.8 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 68/228 (29%), Positives = 107/228 (46%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+WET E + RYF +FG+I++ VV+ + +GRS+G+GFVTF +P +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 93 PTPFIDGRRAN---CNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLP 149
+DGR + CN +L +P+ Y ++ L S T+ + +G +
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGY-KVFLGGLPSNVTETDLRTFFNRYGKVTEVV 126
Query: 150 YNY-QQGMVYPSYGYATYGPE----------YVYPQGIYNPYQQYVPIYGVPG--TVNTA 196
Y Q+ +G+ ++ E Y+ G ++ P G G + N+
Sbjct: 127 IMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNST 186
Query: 197 VY-PYGQLGQTIP--GSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSP 241
V YG+LG G H + P+ M G Q Q GGP LN +P
Sbjct: 187 VGGAYGKLGNECSHWGPH-HAPINM--MQG-QNGQMGGPPLNMPIGAP 230
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 187 (70.9 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 66/217 (30%), Positives = 98/217 (45%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 85 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 144
Query: 89 ACADPTPFIDGRRANCNLASLGRPR-PQVLYGRLR--PATLFS---GSTQATRGPYIGSF 142
C I+ + C A P GR R P T+ + G ++ ++
Sbjct: 145 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY 204
Query: 143 GYQQP--LP-YNYQQGMVYPSYGYATYGP----EYVYPQG-IYNPYQQYVPIYGVPGTV- 193
G P P Y YQ +P + A YGP +G + N Y P +G P +
Sbjct: 205 GRGYPGFAPSYGYQ----FPGFPAAAYGPVAAAAVAAARGSVLNSYSAQ-PNFGAPASPA 259
Query: 194 -NTAVYPYGQLGQTIPGSHA--YTPV-QGYGMPGHQI 226
+ P G G PG A Y P Q G+ G+ I
Sbjct: 260 GSNPARPGGFPGANSPGPVADLYGPASQDSGV-GNYI 295
Score = 179 (68.1 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 35/100 (35%), Positives = 59/100 (59%)
Query: 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93
+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF +P + + P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 94 TPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQA 133
+D + + +A R +P+++ R +F G A
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKMV---TRTKKIFVGGLSA 97
Score = 41 (19.5 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 188 GVPGTVNTAVYPYGQLGQ-----TIP-GSHAYTPVQGYGMPGHQIMQFG 230
G+P T++ + G LG T G + P GY PG +G
Sbjct: 180 GLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYG 228
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 197 (74.4 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 38/98 (38%), Positives = 59/98 (60%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GG++W+T E ++ YF ++G+++EAV++ D+ TGR++G+GF+ F +P A R D
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGS 130
IDGR A + R QVL P L S S
Sbjct: 76 KH-IIDGRTVEAKKA-VPRDDQQVLKRHASPMHLISPS 111
Score = 130 (50.8 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEA 85
G K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+TF E+
Sbjct: 117 GGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEES 175
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 193 (73.0 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 55/179 (30%), Positives = 84/179 (46%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SPF K+F+GGL WET +++R YFEQFGE+L+ V+ D TGRS+G+GF+TF+ P
Sbjct: 156 SPFNRED-GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGS-----TQATRGPY 138
+ + +DG+ + A PR + + + A +F G T+ +
Sbjct: 215 KCVNEVMSKEH-HLDGKIIDPKRAI---PREE----QEKTAKMFVGGVPGDCTEEEFRNF 266
Query: 139 IGSFGYQQPLPYNYQQGMVYP-SYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTA 196
FG + P +G+ TY E + PY + I+G P V A
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPY---ITIHGKPVEVKRA 322
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 38/113 (33%), Positives = 61/113 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+W+T + ++ YF +FGE+ + + D NTGRS+G+GF+ F+EP + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 93 PTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DGR + A + P ++ G L P +T+ Y G FG
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYFGEFG 108
Score = 156 (60.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 50/164 (30%), Positives = 71/164 (43%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF +FGEI EA+ + D T + +G+ F+TF+E + ++
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPY--------IGSF- 142
+ G + +A Q + + G + RG G++
Sbjct: 144 KKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGRGSYGGRGRGGRGGAQSQNWNQGYGNYW 203
Query: 143 --GYQQPLPYNYQQGMV------YPSYGYATYGPEYVYPQGIYN 178
GY Y YQQG Y YGY YGP Y Y QG N
Sbjct: 204 NQGYGNQ-GYGYQQGYGGYGGYDYSGYGYYGYGPGYDYSQGSAN 246
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 38/113 (33%), Positives = 61/113 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+W+T + ++ YF +FGE+ + + D NTGRS+G+GF+ F+EP + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 93 PTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DGR + A + P ++ G L P +T+ Y G FG
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYFGEFG 108
Score = 125 (49.1 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 33/113 (29%), Positives = 52/113 (46%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF +FGEI EA+ + D T + +G+ F+TF+E + ++
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGY 144
+ G + +A Q + + G + RG GS Y
Sbjct: 144 KKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGRGSYGGRGRGGRGGGQGSANY 196
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 36/102 (35%), Positives = 61/102 (59%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
+K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF +P + +
Sbjct: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQA 133
P +D + + +A R +P+++ R +F G A
Sbjct: 77 QPHHELDSKTIDPKVAFPRRAQPKMV---TRTKKIFVGGLSA 115
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 44/145 (30%), Positives = 69/145 (47%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F++P A
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
+DGR + + ++ G + P G T+ Y FG + Y
Sbjct: 71 RPHTLDGRNQKGPRSDNSKSN-KIFVGGI-PHNC--GETELRE--YFKKFGVVTEVVMIY 124
Query: 153 QQGMVYP-SYGYATYGPEYVYPQGI 176
P +G+ T+ E Q +
Sbjct: 125 DAEKQRPRGFGFITFEDEQSVDQAV 149
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 192 (72.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 40/111 (36%), Positives = 63/111 (56%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GF+ F +P + R D
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFS---GSTQATRGPYIG 140
IDGR A + R QVL P L S G T+ ++G
Sbjct: 67 KH-IIDGRTVEAKKA-VPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVG 115
Score = 140 (54.3 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 21 YLNSPF--GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 78
+L SP G K+FVGGL E + YF+QFG I + VV+ D NT R +G+GF+
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Query: 79 TFREPEAARR 88
TF +A R
Sbjct: 157 TFDSDDAVDR 166
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 188 (71.2 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 56/195 (28%), Positives = 81/195 (41%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 73 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 132
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 133 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLG--IGMLGY---- 186
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIP 208
P +Q Y S Y P Y Y + + P+ P P G
Sbjct: 187 P-GFQ-ATTYASRSYTGLAPGYTYQFPEFRV--ERTPLPSAPVLPELTAIPLTAYGPMAA 242
Query: 209 GSHAYTPVQGYGMPG 223
+ A V+G G+PG
Sbjct: 243 AAAAAAVVRGTGLPG 257
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 46 ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105
E +R YF QFGE E +V+ D T RS+G+GFVTF + + A +D + +
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 106 LASLGRPRPQVL 117
+A R +P+++
Sbjct: 61 VAFPRRAQPKMV 72
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 190 (71.9 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+NS K+FVGGL W T ET+R YF Q+GE+++ V++ DK+T +S+G+GFV F+
Sbjct: 1 MNSNLAGDEIGKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFK 60
Query: 82 EPEAARRACADPTPF-IDGR 100
+P R D P +DGR
Sbjct: 61 DPNCVRTVL-DTKPHNLDGR 79
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 70/234 (29%), Positives = 91/234 (38%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGG+ +R YF +FG + E V+I D R +G+GF+TF ++ +A
Sbjct: 114 KIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNM 173
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQ-ATRGPYIGSFGYQ-QPLPY 150
I G++ A PR PA G+ Q R + G+ QP P
Sbjct: 174 HFHDIMGKKVEVKKAE---PRDSKA-----PAPGQLGANQWGPRAIISAANGWAAQPAP- 224
Query: 151 NYQQGM----VYPSYGY--ATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLG 204
+QQ V+ S G A YGP P G P Q P A P G G
Sbjct: 225 TWQQSYGPQGVWVSTGQPLAGYGPPL--PAGRGAPAQAPSPF----NAFLVAAPPTGGFG 278
Query: 205 --QTIPGSHAYTPVQ-GY--GMP-GHQIMQFGGPNLNAIT-TSPLPTVQAPYPT 251
Q P T Q GY G P G Q + G P A PL A P+
Sbjct: 279 APQGYPQQGFSTQPQFGYSFGTPQGDQFVAQGMPPPPATPGAGPLGFAPATTPS 332
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 176 (67.0 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL WET ++++ YF QFGE+ E V+ D TGRS+G+GF+TF++P+
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK 170
Query: 93 PTPFIDGR 100
++DG+
Sbjct: 171 EH-YLDGK 177
Score = 148 (57.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
+K+FVGG++ E + +++F QFG +++A ++ DK+TGR +G+GFVTF A A +
Sbjct: 194 SKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALS 253
Query: 92 DP 93
P
Sbjct: 254 RP 255
Score = 55 (24.4 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 37/143 (25%), Positives = 45/143 (31%)
Query: 112 PRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPS-Y-GYATYGPE 169
P PQ + + PA + Q + G Q + N M S Y G GP
Sbjct: 389 PTPQSMQNMMNPAMMQQMQQQMPNQGQANNMGGQMGMGGNGSGNMNMGSNYAGGGRGGPG 448
Query: 170 YVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMP-GHQIMQ 228
Y + I Q+Y N A PY Q G T Y V +P G Q M
Sbjct: 449 YNAHEQIAFEQQKYEQQQARRAMENRAFSPYQQGGPT-SWEGMYDEVPQPNIPTGPQAMN 507
Query: 229 FGGPNLNAITTSPLPTVQAPYPT 251
T P A PT
Sbjct: 508 RSSSVGRGQTPQPQGAAPANAPT 530
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 176 (67.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 40/124 (32%), Positives = 66/124 (53%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
++SP T K+FVGGL+W+T + ++ YF +FGE+ + + D NTGRS+G+GF+ F+
Sbjct: 56 ISSPL--TEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFK 113
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ E+ + +DGR + A + P ++ G L P +G Q Y
Sbjct: 114 DAESVDKVLEHKEHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNPE---AGEDQIRE--YF 168
Query: 140 GSFG 143
+FG
Sbjct: 169 ETFG 172
Score = 149 (57.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 61/191 (31%), Positives = 89/191 (46%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E + +R YFE FGEI EA+ + D T + +G+ F+TF+E + ++
Sbjct: 149 KIFVGGLNPEAGEDQIREYFETFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 92 DPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLP 149
+ G + C + + +P+ Q YG R + F G + RG + Q
Sbjct: 208 KKFHNVSGSK--CEI-KIAQPKEVYQQQYGG-RGGS-FGG--RGGRGGKGQGQNWNQG-- 258
Query: 150 YNY-QQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGV-PG-TVNTAVYPYGQLGQT 206
YNY QG Y + GY YG + G Y+ Y Y YG PG + YG+ +
Sbjct: 259 YNYWNQG--YGNQGYGGYGQQGYGGYGNYD-YSGY-GYYGYGPGYDYSQGSANYGKAPRR 314
Query: 207 IPGSHA--YTP 215
GSH Y P
Sbjct: 315 --GSHQNNYKP 323
Score = 43 (20.2 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 187 YGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGM-PGHQIMQFGGPN 233
Y G N YGQ G G++ Y+ YG PG+ Q G N
Sbjct: 261 YWNQGYGNQGYGGYGQQGYGGYGNYDYSGYGYYGYGPGYDYSQ-GSAN 307
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL W T ET+R YF Q+GE+++ V++ DK T +S+G+GFV F++P A
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 116 RPHTLDGR 123
Score = 121 (47.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 25 PFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
P D + + K+FVGG+ +R YF++FG + E V+I D R +G+GF+TF +
Sbjct: 132 PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 191
Query: 84 EAARRA 89
++ +A
Sbjct: 192 QSVDQA 197
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 64/206 (31%), Positives = 92/206 (44%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 46 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 105
Query: 89 ACADPTPFIDGRRANCNLASLGRPR-PQVLYGRLR--PATLFSGSTQATRGPYIGSFGYQ 145
C I+ + C A P GR R P T+ + G +G GY
Sbjct: 106 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFML----G--MGMLGYP 159
Query: 146 QPLPYNYQQGM--VYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQL 203
+ Y +G PSYGY G +P Y P + G+ + P G
Sbjct: 160 NFVA-TYGRGYPGFAPSYGYQFPG----FPAAAYGPVAA-AAVAAARGSGSNPARPGGFP 213
Query: 204 GQTIPGSHA--YTPV-QGYGMPGHQI 226
G PG A Y P Q G+ G+ I
Sbjct: 214 GANSPGPVADLYGPASQDSGV-GNYI 238
>UNIPROTKB|H0YA61 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL136305 HGNC:HGNC:21539 Ensembl:ENST00000509686
Bgee:H0YA61 Uniprot:H0YA61
Length = 80
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 39/70 (55%), Positives = 48/70 (68%)
Query: 63 VITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLG-RPR---PQVLY 118
VITD+ TG+S+GYGFVT + AA RAC DP P IDGR+AN NLA LG +PR P +
Sbjct: 1 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAF 60
Query: 119 G--RLRPATL 126
G +L PA +
Sbjct: 61 GVQQLHPALI 70
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 38/101 (37%), Positives = 60/101 (59%)
Query: 22 LNSPFGDTTY--TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 79
+ S G Y +K+FVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+
Sbjct: 23 VTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVS 82
Query: 80 FREPEAARRACADPT-PFIDGRRANCNLASLGRPRPQVLYG 119
F ++A A + ++GR+ NLA+ P+ +G
Sbjct: 83 FSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFG 123
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 188 (71.2 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 56/183 (30%), Positives = 81/183 (44%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L S D +FV G W+T E ++ FE +GEI E V+ DK+TGR KGYGFV F+
Sbjct: 398 LESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFK 457
Query: 82 EPEAARRACADPTPFIDGRRANCNLAS-----LGRPRPQVLYGRLRPATLFSGSTQATRG 136
+ AR A P + R CNLAS G+ + + + + S G
Sbjct: 458 TRKGAREALKRPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPVNIDLTKMANQSEAVLPG 517
Query: 137 PYIGSFGYQQPLPYNYQQ-----GMVYPSYGYATYGPEYVYPQGIYNPYQQY--VPIYGV 189
+G + + + QQ G P YGY+ P + G + Q +P YG+
Sbjct: 518 IELGRGHVLEKMHHQQQQTMDMFGQNMPFYGYSHQFPGFDPMYGALSGNQMLAGLPNYGM 577
Query: 190 PGT 192
G+
Sbjct: 578 FGS 580
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 163 (62.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+L+ + TD TGRS+G+GFV F++ E+ R
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 93 PTPFIDGRRANCNLASL--GRPRPQ-VLYGRLRP 123
+DG+ + A G+ P+ V G L P
Sbjct: 91 TEHKLDGKLIDPKRAKAIKGKEPPKKVFVGGLSP 124
Score = 125 (49.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 48/154 (31%), Positives = 68/154 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVFVGGL+ + E +R YF +GEI + TD T +G+ FVTF E ++ +
Sbjct: 116 KVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN 175
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATL-FSGSTQATRGPYIGSFGYQQPLPYN 151
I + +A +P+ +Y + + F G RG + G G Q
Sbjct: 176 RYHQIGSGKCEIKVA-----QPKEVYRQQQNRDRGFGGG----RGGFRGRGGRGQ----G 222
Query: 152 YQQGMVYPSYGYATYGPEYV--YPQGIYNPYQQY 183
+ QG Y +Y YG Y Y QG YN Y Y
Sbjct: 223 FNQG--YNNYYGQNYGGGYGNGYNQG-YNGYSGY 253
Score = 61 (26.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 18/51 (35%), Positives = 20/51 (39%)
Query: 138 YIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYG 188
Y G +G YN G Y Y Y YG Y QG Y+ Y YG
Sbjct: 235 YGGGYGNGYNQGYNGYSGYDYSGYNYQNYG----YGQG-YDDYSGQQSSYG 280
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 186 (70.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 44/125 (35%), Positives = 68/125 (54%)
Query: 22 LNSPFGDTTYT-KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 80
+ P D+ T VFVG L+W + + + FE++G I+ A VI D +GRSKGYG+V F
Sbjct: 252 ITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDF 311
Query: 81 REPEAARRA-CADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYI 139
PEAA+ A A+ T IDGR N +L++ PQ Y + R ++ + ++
Sbjct: 312 ETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQP-YAQQRAGNFGDQLSEPSDTVFV 370
Query: 140 GSFGY 144
G+ +
Sbjct: 371 GNLSF 375
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 170 (64.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 34/89 (38%), Positives = 52/89 (58%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D+ K+FVGG++WET + +R +F +GE+ +A+V+ DK TGR +G+GFV F +P
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 88 RACADPTPFIDGRRANCNLASLGRPRPQV 116
R + ID R + A + R QV
Sbjct: 62 RVLQEKHS-IDTREVDVKRA-MSREEQQV 88
Score = 144 (55.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 61/206 (29%), Positives = 81/206 (39%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL E R+YFE +G + + ++ D+ T R +G+GFV+F +A
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRG---PYIGSFGYQQPLP 149
+ G++ A P GR SG Q G Y G + L
Sbjct: 171 TFHDLSGKQVEVKRALPKDANPGG-GGRSMGGG-GSGGYQGYGGNESSYDGRMDSNRFLQ 228
Query: 150 YNYQQGMVYPSYGYATYGPEYVY-PQGI-YNPYQQYVPIYGVPGTVNTAVY-----P--- 199
+ G PSYG + YG Y G Y Y Y G G TA Y P
Sbjct: 229 HQ-SVGNGLPSYGSSGYGAGYGNGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIPGAG 287
Query: 200 YGQLGQTIPGSHAYTPVQ-GYGMPGH 224
YG P + TP GYG PG+
Sbjct: 288 YGSSTGVAPRNSWDTPASSGYGNPGY 313
Score = 56 (24.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 35/114 (30%), Positives = 38/114 (33%)
Query: 118 YGRLR-PATLFSGSTQ-ATRGPYI--GSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYP 173
YG P + ST A R + S GY P Y G + YG P P
Sbjct: 278 YGATNIPGAGYGSSTGVAPRNSWDTPASSGYGNP---GYGSGAAHSGYGVPGAAPPTQSP 334
Query: 174 QGIYNPYQQYVPIYGVP-GTVNTAVY------PYGQLGQTIPGSHAYTPVQGYG 220
G N Y G G N A Y P G G PGS Y GYG
Sbjct: 335 SGYSNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGG-GSNNPGSGGYMG-GGYG 386
Score = 46 (21.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 29/93 (31%), Positives = 33/93 (35%)
Query: 137 PYIGSFGYQQPLPYNYQQGMVYPSYGYAT-----YGPEYVYPQGIYN-PYQQYVPIYGVP 190
P GS GY N G Y +YG T YG G N P Y GV
Sbjct: 237 PSYGSSGYGAGYG-NGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIPGAGYGSSTGVA 295
Query: 191 GTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPG 223
N+ P G PG + GYG+PG
Sbjct: 296 PR-NSWDTPASS-GYGNPGYGSGAAHSGYGVPG 326
Score = 40 (19.1 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 22/74 (29%), Positives = 24/74 (32%)
Query: 149 PYNYQQGMVYPSYGYATY-GPEYVYP-QGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQT 206
P G YGY Y G + Y Q Y P G + Y G G
Sbjct: 330 PTQSPSGYSNQGYGYGGYSGSDSGYGNQAAYGVVGGR-PSGGGSNNPGSGGYMGGGYGD- 387
Query: 207 IPGSHAYTPVQGYG 220
GS P QGYG
Sbjct: 388 --GSWRSDPSQGYG 399
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 33/76 (43%), Positives = 51/76 (67%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTF++ +A R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 93 PT-PFIDGRRANCNLA 107
+DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 38/83 (45%), Positives = 53/83 (63%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D + K+F+ GLA +T +E +R F +G++ EA+VI DK TG+SKGYGFVTF + A
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 88 RACADPTPFIDGRRANCNLASLG 110
A +P+ IDGR LA+ G
Sbjct: 131 LALKEPSKKIDGRVTVTQLAASG 153
Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 68/243 (27%), Positives = 103/243 (42%)
Query: 20 QYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 79
Q S D + K++V + ++ ++ + +F +G++ E + DK TG+S+G+
Sbjct: 155 QGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFV 214
Query: 80 FREPEAARRACADPTPFIDGRRANCNLA----SLGRP-RPQVLYGRLRPATLFSGSTQAT 134
++ E A+ A ADP IDG+ NC LA G+P PQ G +
Sbjct: 215 YKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGHGHVHGEGMGMV 274
Query: 135 R--GPY-----IGSFGYQQPLPYNYQQGMVYPSYGY--ATYGPEYV-YP-QGIYNPYQQY 183
R GPY I ++G P + + S G A YG Y Y G Y
Sbjct: 275 RPAGPYGAAGGISAYGGYSGGPPAHHMNSTHSSMGVGSAGYGGHYGGYGGPGGTGVYGGL 334
Query: 184 VPIYGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQG-YGMPGHQIMQFGGPNLNAITTSPL 242
YG PGT + Y ++PG Y P G YG+ + G + A+ TSP+
Sbjct: 335 GGGYGGPGTGSGQ---YRMPPSSMPGGGGY-PESGHYGLSSSA--GYPGQHHQAVGTSPV 388
Query: 243 PTV 245
P V
Sbjct: 389 PRV 391
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 183 (69.5 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 39/111 (35%), Positives = 62/111 (55%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GG++W+T E ++ YF FGE++EAV++ D+ TGR++G+GFV F +P A +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 93 PTPFIDGRRANCNLASLGRPRP-QVLYGRLRPATLFS--GSTQATRGPYIG 140
IDGR A PR Q + R +++ G TR ++G
Sbjct: 67 KHN-IDGRLVEAKKAV---PRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVG 113
Score = 153 (58.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 57/208 (27%), Positives = 85/208 (40%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP G K+FVGGL + YFEQFG + VV+ D NT R +G+GF+T+
Sbjct: 100 SPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE 159
Query: 84 EAARRACADPTPFIDGRRANCNLA-----SLGRPRPQV----LYGRLRPATLFSGSTQAT 134
EA + ++G+ A S G R + YG R L +G Q
Sbjct: 160 EAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGF 219
Query: 135 RGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVN 194
+G +G + ++ G G+A Y Y G+ + Q +P GT
Sbjct: 220 NPAAVGGYGLRMDGRFS-PVGA--GRSGFANYSSGY----GMNVNFDQGLPTGFTGGTNY 272
Query: 195 TAVYPYGQLGQT---IPGSHAYTPVQGY 219
YG+ G + I ++ + P GY
Sbjct: 273 NGNVDYGR-GMSPYYIGNTNRFGPAVGY 299
>DICTYBASE|DDB_G0275971 [details] [associations]
symbol:DDB_G0275971 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275971
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
eggNOG:NOG260394 RefSeq:XP_643377.1 ProteinModelPortal:Q552K5
EnsemblProtists:DDB0203538 GeneID:8620261 KEGG:ddi:DDB_G0275971
InParanoid:Q552K5 Uniprot:Q552K5
Length = 699
Score = 185 (70.2 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 48/143 (33%), Positives = 76/143 (53%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
TK+FVGG++W+ T++ YF QFG +LE +I D NT +SKGYGF+TF ++ +
Sbjct: 103 TKIFVGGISWKADENTLKTYFLQFGNVLECKIIMDYNTNKSKGYGFITFENEDSIEKVRT 162
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP---L 148
F+ G+ N +G P + G + LF+G + + G YIG+ G +
Sbjct: 163 SNLLFM-GKNMN-----IGDP-VRKHNGSIGSNNLFNGVSMSN-G-YIGNGGIMNGNNGI 213
Query: 149 PYN-YQQGMVYPS-YGYATYGPE 169
YN +QQ + + +G Y P+
Sbjct: 214 NYNGHQQKLHHHHPHGQIIYDPQ 236
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D Y + FVGGL W T ++++ F ++G+++++ +ITD+ TGRS+G+GFVTF EA R
Sbjct: 3 DVEY-RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 88 RAC-ADPTPFIDGRRANCNLASLGR 111
+A A +DGR N A R
Sbjct: 62 QAIEAMNGQDLDGRNITVNEAQSRR 86
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
TK+F+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F + AA A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 92 DPT-PFIDGRRANCNLASLGRPRPQVLYG 119
+ ++GR N A+ RP YG
Sbjct: 95 EMDGKELNGRHIRVNPAN-DRPSAPRAYG 122
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 169 (64.5 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 33/102 (32%), Positives = 62/102 (60%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +E +R YF +FGE+ E +V+ D T R++G+GF+TF +P + + +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQAT 134
+DG++ + +A R + +++ + +F G AT
Sbjct: 106 REHELDGKKIDPKVAFPKRTQAKLV---TKTKKVFIGGLSAT 144
Score = 164 (62.8 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 45/138 (32%), Positives = 70/138 (50%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T KVF+GGL+ + E M++YFE +G++ +A+++ DK T R +G+GFVTF E A +
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGS-----FG 143
C I+G+ C A +P+ +L P L A R Y G
Sbjct: 191 VCEIHFHEINGKMVECKKA---QPKEVML-----PVQLNKSRAAAARNLY-GMPPETLLA 241
Query: 144 YQQPLPYNYQQGMVYPSY 161
Y Q LP + ++YP++
Sbjct: 242 YAQYLP-RFGGNLMYPNF 258
Score = 47 (21.6 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 170 YVYPQGIYNPYQQYVPIYGVPGTVNTAVYP-YGQLGQTIPGSHA--YTPVQGYGMPGHQ 225
Y P Y QY+P +G G + +YP + + +PG ++ TP P HQ
Sbjct: 232 YGMPPETLLAYAQYLPRFG--GNL---MYPNFTNVFNNMPGGYSGLSTPGGSSNRPPHQ 285
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GFVTF +P + +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 93 PTPFIDGR 100
P +D +
Sbjct: 82 PHHELDSK 89
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 182 (69.1 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 40/141 (28%), Positives = 73/141 (51%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+W+T S+ ++ YF FG + + +++ D T RS+G+GF+TF+EP +
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
Query: 93 PTPFIDGRRANCNLAS-LGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG-YQQPLPY 150
P +DG++ + A+ RPR ++ + ++ Y FG ++ +
Sbjct: 264 PIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVML 323
Query: 151 NYQQGMVYPSYGYATYGPEYV 171
QQ + +G+ T+ E V
Sbjct: 324 MDQQTKRHRGFGFVTFENEDV 344
Score = 164 (62.8 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 42/125 (33%), Positives = 61/125 (48%)
Query: 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE 82
N P K+FVGG++ +T +E ++ YF QFG + E V++ D+ T R +G+GFVTF
Sbjct: 282 NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFEN 341
Query: 83 PEAARRACADPTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATR-GPY 138
+ R C I ++ C A P Q+L R+ TL G T G
Sbjct: 342 EDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTL--GVQLPTAPGQL 399
Query: 139 IGSFG 143
IG+ G
Sbjct: 400 IGARG 404
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 178 (67.7 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 65 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 124
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 125 DSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 179
Query: 140 GSFG----YQQPL-P-YNYQQGMVYPSY 161
G FG + P+ P N ++G V+ ++
Sbjct: 180 GQFGEIEAIELPIDPKLNKRRGFVFITF 207
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF QFGEI EA+ + D + +G+ F+TF+E + ++
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG 119
+ G + +A Q YG
Sbjct: 219 KKFHTVSGSKCEIKVAQPKEVYQQQQYG 246
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 178 (67.7 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 65 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 124
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 125 DSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 179
Query: 140 GSFG----YQQPL-P-YNYQQGMVYPSY 161
G FG + P+ P N ++G V+ ++
Sbjct: 180 GQFGEIEAIELPIDPKLNKRRGFVFITF 207
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF QFGEI EA+ + D + +G+ F+TF+E + ++
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG 119
+ G + +A Q YG
Sbjct: 219 KKFHTVSGSKCEIKVAQPKEVYQQQQYG 246
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 160 (61.4 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 32/96 (33%), Positives = 55/96 (57%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPAT 125
++G+ + A + P ++ G L P T
Sbjct: 115 KEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDT 150
Score = 128 (50.1 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 45/156 (28%), Positives = 72/156 (46%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN-TGRSKGYGFVTFREPEAARRACA 91
K+FVGGL+ +T E +R YF+ +GE+ E++ + +N T + +G+ F+TF+E E ++
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEV-ESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
Query: 92 DPTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPY 150
I + +A S + + Q +G G T RG + + Q
Sbjct: 199 KKYHNIGLSKCEVKVAMSKEQYQQQQQWGGR------GGYTSRGRGRGGPNQNWNQGYGN 252
Query: 151 NYQQGMV-YPSYGYAT--YGPEYVYPQGIYNPYQQY 183
+ QG Y +YGY YG Y YN Y Y
Sbjct: 253 YWNQGYGNYGNYGYNNQGYGGYGGYDYSGYNNYYGY 288
Score = 60 (26.2 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 27/87 (31%), Positives = 34/87 (39%)
Query: 144 YQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQL 203
YQQ + + G Y S G GP + QG N + Q YG G N YG
Sbjct: 220 YQQQQQWGGRGG--YTSRGRGRGGPNQNWNQGYGNYWNQGYGNYGNYGYNNQGYGGYG-- 275
Query: 204 GQTIPGSHAYTPVQGYGMPGHQIMQFG 230
G G + Y GYG +Q +G
Sbjct: 276 GYDYSGYNNY---YGYGDYSNQQSGYG 299
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 178 (67.7 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 78 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 137
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 138 DSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 192
Query: 140 GSFG----YQQPL-P-YNYQQGMVYPSY 161
G FG + P+ P N ++G V+ ++
Sbjct: 193 GQFGEIEAIELPIDPKLNKRRGFVFITF 220
Score = 124 (48.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF QFGEI EA+ + D + +G+ F+TF+E + ++
Sbjct: 173 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG 119
+ G + +A Q YG
Sbjct: 232 KKFHTVSGSKCEIKVAQPKEVYQQQQYG 259
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 50/158 (31%), Positives = 70/158 (44%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 38 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 97
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 98 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLG--IGMLGY---- 151
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPI 186
P +Q Y S Y P Y Y Q P Y P+
Sbjct: 152 P-GFQ-ATTYASRSYTGLAPGYTY-QFPAIPLTAYGPM 186
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAA 86
GD Y + FVGGLAW T + F Q+G+++++ +I D+ TGRS+G+GFVTF++ +A
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 87 RRACADPT-PFIDGRRANCNLA 107
+ A +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 164 (62.8 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 93 PTPFIDGRRANCNLASL--GRPRPQ-VLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DG+ + A G+ P+ V G L P T S + + Y G+FG
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDT----SEEQIK-EYFGAFG 139
Score = 130 (50.8 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 49/166 (29%), Positives = 72/166 (43%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 175
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
I + +A +P+ +Y R + G + A+ G G G + N+
Sbjct: 176 RYHQIGSGKCEIKVA-----QPKEVY-RQQQQQQKGGKSNASGGRG-GGRGRGRGQGQNW 228
Query: 153 QQGMV-YPSYGYATYGPEYV---YP-QGIYNPYQQY-VPIYGV-PG 191
QG Y GY Y Y Y G Y+ Y Y P YG PG
Sbjct: 229 NQGFNNYYDQGYGNYNSAYSDQSYSGYGGYD-YSGYNYPNYGYGPG 273
Score = 51 (23.0 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 150 YNYQQGMVYPSYGYATYGPEYVYPQGIYNPY 180
Y+Y G YP+YGY GP Y G + Y
Sbjct: 258 YDYS-GYNYPNYGY---GPGYTDYSGQQSTY 284
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 177 (67.4 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 120 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 174
Query: 140 GSFG----YQQPL-P-YNYQQGMVYPSY 161
G FG + P+ P N ++G V+ ++
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITF 202
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF +FGEI EA+ + D + +G+ F+TF+E E ++
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG 119
+ G + +A Q YG
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQYG 241
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 177 (67.4 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 120 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 174
Query: 140 GSFG----YQQPL-P-YNYQQGMVYPSY 161
G FG + P+ P N ++G V+ ++
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITF 202
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF +FGEI EA+ + D + +G+ F+TF+E E ++
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG 119
+ G + +A Q YG
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQYG 241
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 64 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 123
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 124 DSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 178
Query: 140 GSFG----YQQPL-P-YNYQQGMVYPSY 161
G FG + P+ P N ++G V+ ++
Sbjct: 179 GQFGEIEAIELPIDPKLNKRRGFVFITF 206
Score = 170 (64.9 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 52/158 (32%), Positives = 69/158 (43%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF QFGEI EA+ + D + +G+ F+TF+E + ++
Sbjct: 159 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG-----RLRPATLFSGSTQATR-----GPYIGS 141
+ G + +A Q YG SG Q+ G Y
Sbjct: 218 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQ 277
Query: 142 -FGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN 178
+GYQQ Y G Y YGY YGP Y Y QG N
Sbjct: 278 GYGYQQGYGPGYG-GYDYSPYGYYGYGPGYDYSQGSTN 314
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 65 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 124
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 125 DSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 179
Query: 140 GSFG----YQQPL-P-YNYQQGMVYPSY 161
G FG + P+ P N ++G V+ ++
Sbjct: 180 GQFGEIEAIELPIDPKLNKRRGFVFITF 207
Score = 170 (64.9 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 52/158 (32%), Positives = 69/158 (43%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF QFGEI EA+ + D + +G+ F+TF+E + ++
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG-----RLRPATLFSGSTQATR-----GPYIGS 141
+ G + +A Q YG SG Q+ G Y
Sbjct: 219 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQ 278
Query: 142 -FGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN 178
+GYQQ Y G Y YGY YGP Y Y QG N
Sbjct: 279 GYGYQQGYGPGYG-GYDYSPYGYYGYGPGYDYSQGSTN 315
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 59 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 118
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P + T+ Y
Sbjct: 119 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPES----PTEEKIREYF 174
Query: 140 GSFG----YQQPL-P-YNYQQGMVYPSY 161
G FG + P+ P N ++G V+ ++
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITF 202
Score = 150 (57.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 53/164 (32%), Positives = 73/164 (44%)
Query: 33 KVFVGGLAWETQSET-MRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRAC 90
K+FVGGL E+ +E +R YF +FGEI EA+ + D + +G+ F+TF+E E ++
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 91 ADPTPFIDGRRANCNLASLGRPRPQVLYG------RLRPATLFSGS------TQATR--- 135
+ G + +A Q YG R R G +Q+
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGY 272
Query: 136 GPYIGS-FGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN 178
G Y +GYQQ Y G Y YGY YGP Y Y QG N
Sbjct: 273 GNYWNQGYGYQQGYGPGYG-GYDYSPYGYYGYGPGYDYSQGSTN 315
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 46/119 (38%), Positives = 59/119 (49%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACA 91
K+F+GGLAW T + +R F ++G I EAVV+ D++T RS+G+GFV F EPEA A
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPY 150
DGR + AS RP G + G G Y G G LPY
Sbjct: 63 MNNQEFDGRIIRVDKAS---ERPAARNGGFQGR---GGYNSPADGGYRGG-GAGGTLPY 114
>UNIPROTKB|F1NKP3 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830
GeneTree:ENSGT00390000002308 OMA:VGYGYPA EMBL:AADN02018985
IPI:IPI00590634 Ensembl:ENSGALT00000012361 ArrayExpress:F1NKP3
Uniprot:F1NKP3
Length = 172
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 53/139 (38%), Positives = 66/139 (47%)
Query: 66 DKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPAT 125
D+ G+S+GYGFVT + AA RAC DP P IDGR+AN NLA LG +P+ + T
Sbjct: 2 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA-KPRSIQ------T 54
Query: 126 LFSGSTQATRGPYIGS-FGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYV 184
F+ Q +I FG P Y Y Q ++ PS T P Q I +PY Y
Sbjct: 55 GFTIGVQQLHPAFIQRPFGLT-P-HYVYPQAIIQPSVVIPT--PV----QSIASPYIDYT 106
Query: 185 PIYGVPGTVNTAVY---PY 200
TA Y PY
Sbjct: 107 AASQAYSQYTTAAYDQYPY 125
>UNIPROTKB|F1NT70 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IEA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IEA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] InterPro:IPR012677 GO:GO:0008285
GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0003730 GO:GO:0043484 GO:GO:0006978 GO:GO:0070935
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:VGYGYPA
EMBL:AADN02018985 IPI:IPI01017346 Ensembl:ENSGALT00000038979
ArrayExpress:F1NT70 Uniprot:F1NT70
Length = 171
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 53/139 (38%), Positives = 66/139 (47%)
Query: 66 DKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPAT 125
D+ G+S+GYGFVT + AA RAC DP P IDGR+AN NLA LG +P+ + T
Sbjct: 1 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA-KPRSIQ------T 53
Query: 126 LFSGSTQATRGPYIGS-FGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYV 184
F+ Q +I FG P Y Y Q ++ PS T P Q I +PY Y
Sbjct: 54 GFTIGVQQLHPAFIQRPFGLT-P-HYVYPQAIIQPSVVIPT--PV----QSIASPYIDYT 105
Query: 185 PIYGVPGTVNTAVY---PY 200
TA Y PY
Sbjct: 106 AASQAYSQYTTAAYDQYPY 124
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 176 (67.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 37/124 (29%), Positives = 65/124 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 120 DATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 174
Query: 140 GSFG 143
G FG
Sbjct: 175 GEFG 178
Score = 127 (49.8 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 30/88 (34%), Positives = 45/88 (51%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF +FGEI EA+ + D + + +G+ F+TF+E E ++
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG 119
I G + +A Q YG
Sbjct: 214 KKFHTISGSKCEIKVAQPKEVYQQQQYG 241
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 177 (67.4 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F+
Sbjct: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 120 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 174
Query: 140 GSFG----YQQPL-P-YNYQQGMVYPSY 161
G FG + P+ P N ++G V+ ++
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITF 202
Score = 170 (64.9 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 52/158 (32%), Positives = 69/158 (43%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF +FGEI EA+ + D + +G+ F+TF+E E ++
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG-----RLRPATLFSGSTQATR-----GPYIGS 141
+ G + +A Q YG SG Q+ G Y
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQ 273
Query: 142 -FGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN 178
+GYQQ Y G Y YGY YGP Y Y QG N
Sbjct: 274 GYGYQQGYGPGYG-GYDYSPYGYYGYGPGYDYSQGSTN 310
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 49/146 (33%), Positives = 66/146 (45%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL + T + + +F FG I E VV+ D+ T RS+G+GF+TF PE A A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 92 DPTPFIDGRRANCNLA--SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIG-----SFGY 144
+DGR+ + A S R GR R + G G Y +GY
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGY 126
Query: 145 QQPLPYNYQQGMVYPSYGYATYGPEY 170
+ Y+ QG Y Y Y Y
Sbjct: 127 GRSRDYSGSQGG-YDRYSGGNYRDNY 151
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 42/120 (35%), Positives = 61/120 (50%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
E A +DGR A + R Q L +F G +RG G +G
Sbjct: 66 EEVDAAMNARPHKVDGRVVEPKRA-VSREDSQRPGAHLTVKKIFVGGFGGSRGG--GGYG 122
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 176 (67.0 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 35/102 (34%), Positives = 61/102 (59%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T +++R YF +FGEI E +V+ D T RS+G+GF+TF + + + A
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQAT 134
P +D + + +A R +P+++ R +F G A+
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMV---TRTKKIFVGGLSAS 120
Score = 170 (64.9 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 47/149 (31%), Positives = 73/149 (48%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEK 166
Query: 89 ACADPTPFIDGRRANCNLASLGRPR-PQVLYGRLR--PATLFS---GSTQATRGPYIGSF 142
C I+ + C A P GR R P T+ + G + + ++
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARSLPYTMDAFMLGMGMLSYPNIVATY 226
Query: 143 G--YQQPLP-YNYQQGMVYPSYGYATYGP 168
G Y P Y+YQ +P + YGP
Sbjct: 227 GRGYTGFSPSYSYQ----FPGFPATAYGP 251
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 177 (67.4 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 48/154 (31%), Positives = 74/154 (48%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGG+ E +F QFG+I++ ++ DK+TGRS+G+GFVT+ P A + C +
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN 306
Query: 93 PTPFIDGRRANCNLAS-LGRPRPQVLYGRLRPATLFSGSTQATRG---PYIGSFGYQQPL 148
+ G+ A+ G+ QV+ + + QA + PY GS+G+QQ
Sbjct: 307 KYLTLKGKAMEVKRAAPRGQHNQQVMMQQQQQQQQQQAQQQAQQQAMYPY-GSYGFQQMN 365
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQ 182
P M S Y Y ++Y Q QQ
Sbjct: 366 PGAMNPAM---SQEYMRYYQWFMYQQAQAAQQQQ 396
Score = 143 (55.4 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 24/68 (35%), Positives = 44/68 (64%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K F+GGL+W+T E + +F+++G I++ ++ D TGRS+G+GF+TF + ++ D
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKD 222
Query: 93 PTPFIDGR 100
+DG+
Sbjct: 223 -RHVLDGK 229
Score = 41 (19.5 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 196 AVYPYGQLG--QTIPGS 210
A+YPYG G Q PG+
Sbjct: 352 AMYPYGSYGFQQMNPGA 368
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 165 (63.1 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 38/118 (32%), Positives = 64/118 (54%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T+ K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 89 ACADPTPFIDGRRANCNLASL--GRPRPQ-VLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DG+ + A G+ P+ V G L P T S + + Y G+FG
Sbjct: 108 VLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDT----SEEQIK-EYFGAFG 160
Score = 130 (50.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 49/175 (28%), Positives = 72/175 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
I + +A +P+ +Y + + G A G G+ G + N+
Sbjct: 197 RYHQIGSGKCEIKVA-----QPKEVYRQQQQQQ--KGGRGAAAGGRGGARGRGRGQGQNW 249
Query: 153 QQGMV-YPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQT 206
QG Y GY Y Y Y+ Y Y G N Y YGQ G T
Sbjct: 250 NQGFNNYYDQGYGNYNS--AYGDESYSGYGGY----DYTG-YNYGSYGYGQ-GYT 296
Score = 43 (20.2 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 136 GPYIGSFG---YQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIY 177
G Y ++G Y Y+Y G Y SYGY +Y Q Y
Sbjct: 262 GNYNSAYGDESYSGYGGYDYT-GYNYGSYGYGQGYTDYSGQQSTY 305
Score = 38 (18.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 17/51 (33%), Positives = 18/51 (35%)
Query: 138 YIGSFGYQQPLPYNYQQ---GMVYPSYG--YATYGPEYVYPQGIYNPYQQY 183
Y G GY YNY G Y Y +TYG N YQ Y
Sbjct: 273 YSGYGGYDYT-GYNYGSYGYGQGYTDYSGQQSTYGKASRGGGNHQNNYQPY 322
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 165 (63.1 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 38/118 (32%), Positives = 64/118 (54%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T+ K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 89 ACADPTPFIDGRRANCNLASL--GRPRPQ-VLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DG+ + A G+ P+ V G L P T S + + Y G+FG
Sbjct: 108 VLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDT----SEEQIK-EYFGAFG 160
Score = 130 (50.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 49/175 (28%), Positives = 72/175 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
I + +A +P+ +Y + + G A G G+ G + N+
Sbjct: 197 RYHQIGSGKCEIKVA-----QPKEVYRQQQQQQ--KGGRGAAAGGRGGARGRGRGQGQNW 249
Query: 153 QQGMV-YPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQT 206
QG Y GY Y Y Y+ Y Y G N Y YGQ G T
Sbjct: 250 NQGFNNYYDQGYGNYNS--AYGDESYSGYGGY----DYTG-YNYGSYGYGQ-GYT 296
Score = 43 (20.2 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 136 GPYIGSFG---YQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIY 177
G Y ++G Y Y+Y G Y SYGY +Y Q Y
Sbjct: 262 GNYNSAYGDESYSGYGGYDYT-GYNYGSYGYGQGYTDYSGQQSTY 305
Score = 38 (18.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 17/51 (33%), Positives = 18/51 (35%)
Query: 138 YIGSFGYQQPLPYNYQQ---GMVYPSYG--YATYGPEYVYPQGIYNPYQQY 183
Y G GY YNY G Y Y +TYG N YQ Y
Sbjct: 273 YSGYGGYDYT-GYNYGSYGYGQGYTDYSGQQSTYGKASRGGGNHQNNYQPY 322
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL +ET E++ + F ++G++ E VV+ D+ + RS+G+GFVTF PE A+ A A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 51/150 (34%), Positives = 69/150 (46%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL + T + + +F FG I E VV+ D+ T RS+G+GF+TF +PE A A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 92 DPTPFIDGRRANCNLA--SLGRPRPQVL--YGRLRPATLFSGSTQATRGPYI---GSFGY 144
+DGR+ + A S R +GR R + G G Y G +GY
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDSRPGGYGY 126
Query: 145 QQPLPYNYQQGMVYPSY---GYATY-GPEY 170
Y Y + Y GY Y G Y
Sbjct: 127 GYGYGYGYGRSRDYGGRSQGGYDRYSGGNY 156
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 49/148 (33%), Positives = 66/148 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL + T + + +F FG I E VV+ D T RS+G+GF+TF PE A A A
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 92 DPTPFIDGRRANCNLA--SLGRPRPQVL------YGRLRPATLFSGST-QATRGPYIGSF 142
+DGR+ + + A S R Y R R + S + G Y +
Sbjct: 67 TNGESLDGRQIHVDHAGKSARGTRGGAFEAHGHGYSRGRGHQSYGSSRYDSLPGGYGYGY 126
Query: 143 GYQQPLPYNYQQGMVYPSYGYATYGPEY 170
GY + Y QG Y Y Y Y
Sbjct: 127 GYGRSRDYGSSQGS-YDRYSGGNYRDNY 153
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 175 (66.7 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 44/138 (31%), Positives = 65/138 (47%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GG++W+T +R YF FGE+L+ V+ +K TGR +G+GFV F +P R D
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLF-SGSTQATRGPYIGSFGYQQPLPY 150
ID R + A S P G + F SG+ T+ ++G P
Sbjct: 67 KH-HIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGL----PPAL 121
Query: 151 NYQQGMVYPSYGYATYGP 168
+ Y + TYGP
Sbjct: 122 TSDEFRAY----FETYGP 135
Score = 164 (62.8 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 63/210 (30%), Positives = 93/210 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL S+ R YFE +G + +AV++ D+ T R +G+GFV+F ++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGS--FGYQQPLPY 150
++G++ A P + G R SG G Y GS GY+ +
Sbjct: 171 TFHDLNGKQVEVKRALPKDANPGIASGGGRG----SGGAGGFPG-YGGSGGSGYEGRVDS 225
Query: 151 N-YQQ----GMVYPSYGYATYGPEYVY-PQGI-YNPYQQYVPIYGVP-GTVNTAVYPYGQ 202
N Y Q G YP YG + YG Y Y G+ Y + Y G P G + +G
Sbjct: 226 NRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGVGYGGFGGYGNPAGAPYGNPSVPGAGFGS 285
Query: 203 LGQTIPGSHAYTPVQGYGMPGH-QIMQFGG 231
++ G+ A P GYG G+ +GG
Sbjct: 286 GPRSSWGAQA--P-SGYGNVGYGNAAPWGG 312
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 174 (66.3 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 54/162 (33%), Positives = 73/162 (45%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL E E ++ YF QFG I+E + DK + KG+ F+TF +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGY--QQPLPY 150
P I G+ + A+ +P Q++ G +R G + RG Y G GY Q
Sbjct: 197 PKQKIAGKEVDVKRAT-PKPENQMM-GGMRGGP--RGGMRGGRGGYGGRGGYNNQWDGQG 252
Query: 151 NYQ-QGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPG 191
+Y G Y YG YG +Y Y G YN Y YG G
Sbjct: 253 SYGGYGGGYGGYGAGGYG-DY-YAGGYYNGYDYGYDGYGYGG 292
Score = 160 (61.4 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 45/152 (29%), Positives = 72/152 (47%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+WET + +R +F ++GEI V TD TGRS+G+ F+ F EA + A
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG--YQQPLPY 150
I+ ++ + A + + G L T S T Y G FG + +P+
Sbjct: 117 DEHIINSKKVDPKKAKARHGK--IFVGGL--TTEISDEEIKT---YFGQFGNIVEVEMPF 169
Query: 151 NYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQ 182
+ Q+ + + T+ E V + P Q+
Sbjct: 170 DKQKSQ-RKGFCFITFDSEQVVTDLLKTPKQK 200
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 110
Score = 121 (47.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 87 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 142
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+F+GGL ++T E++ + F ++G+I E VV+ D+ T RS+G+GFVTF P+ A+ A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 40/108 (37%), Positives = 63/108 (58%)
Query: 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
T ++FV GL+ T +E ++ F FG++++A VITD+++GRSKG+GFVT+ E A +A
Sbjct: 32 TSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKA 91
Query: 90 CADPTP-FIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRG 136
A+ F+DG + A PR + LRP++ +T T G
Sbjct: 92 KAEMNAKFLDGWVIFVDPARPREPRRPLQQEPLRPSSESGFTTNKTIG 139
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 173 (66.0 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 54/192 (28%), Positives = 78/192 (40%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 86 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 145
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 146 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLG--IGMLGY---- 199
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIP 208
P +Q Y S Y P Y Y + + P+ P P G
Sbjct: 200 P-GFQ-ATTYASRSYTGLAPGYTYQFPEFRV--ERTPLPSAPVLPELTAIPLTAYGPMAA 255
Query: 209 GSHAYTPVQGYG 220
+ A V+G G
Sbjct: 256 AAAAAAVVRGTG 267
Score = 169 (64.5 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF + + A
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 93 PTPFIDGRRANCNLASLGRPRPQVL 117
+D + + +A R +P+++
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKMV 85
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 173 (66.0 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 54/192 (28%), Positives = 78/192 (40%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLG--IGMLGY---- 219
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIP 208
P +Q Y S Y P Y Y + + P+ P P G
Sbjct: 220 P-GFQ-ATTYASRSYTGLAPGYTYQFPEFRV--ERTPLPSAPVLPELTAIPLTAYGPMAA 275
Query: 209 GSHAYTPVQGYG 220
+ A V+G G
Sbjct: 276 AAAAAAVVRGTG 287
Score = 171 (65.3 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVL 117
+ + A +D + + +A R +P+++
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 172 (65.6 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 54/192 (28%), Positives = 77/192 (40%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 73 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 132
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 133 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLG--IGMLGY---- 186
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIP 208
P +Q Y S Y P Y Y + + P+ P P G
Sbjct: 187 P-GFQ-ATTYASRSYTGLAPGYTYQFPEFRV--ERTPLPSAPVLPELTAIPLTAYGPMAA 242
Query: 209 GSHAYTPVQGYG 220
+ A V+G G
Sbjct: 243 AAAAAAVVRGTG 254
Score = 120 (47.3 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 46 ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105
E +R YF QFGE+ E +V+ D T RS+G+GFVTF + + A +D + +
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 106 LASLGRPRPQVL 117
+A R +P+++
Sbjct: 61 VAFPRRAQPKMV 72
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 170 (64.9 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 37/124 (29%), Positives = 64/124 (51%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
+N+ + K+FVGGL+W+T + ++ YF +FGE+++ + NTGRSKG+GF+ F+
Sbjct: 54 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFK 113
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRP--QVLYGRLRPATLFSGSTQATRGPYI 139
+ + + +DGR + A + P ++ G L P +T+ Y
Sbjct: 114 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPE-----ATEEKIREYF 168
Query: 140 GSFG 143
G FG
Sbjct: 169 GEFG 172
Score = 131 (51.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFREPEAARRACA 91
K+FVGGL E E +R YF +FGEI EA+ + D T + +G+ F+TF+E E ++
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYG 119
I G + +A Q YG
Sbjct: 208 KKFHTISGSKCEIKVAQPKEVYQQQQYG 235
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 172 (65.6 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 54/192 (28%), Positives = 77/192 (40%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLG--IGMLGY---- 219
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIP 208
P +Q Y S Y P Y Y + + P+ P P G
Sbjct: 220 P-GFQ-ATTYASRSYTGLAPGYTYQFPEFRV--ERTPLPSAPVLPELTAIPLTAYGPMAA 275
Query: 209 GSHAYTPVQGYG 220
+ A V+G G
Sbjct: 276 AAAAAAVVRGTG 287
Score = 171 (65.3 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVL 117
+ + A +D + + +A R +P+++
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 172 (65.6 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 54/192 (28%), Positives = 77/192 (40%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLG--IGMLGY---- 219
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIP 208
P +Q Y S Y P Y Y + + P+ P P G
Sbjct: 220 P-GFQ-ATTYASRSYTGLAPGYTYQFPEFRV--ERTPLPSAPVLPELTAIPLTAYGPMAA 275
Query: 209 GSHAYTPVQGYG 220
+ A V+G G
Sbjct: 276 AAAAAAVVRGTG 287
Score = 171 (65.3 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVL 117
+ + A +D + + +A R +P+++
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 160 (61.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 36/114 (31%), Positives = 62/114 (54%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G+FG
Sbjct: 61 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGAFG 109
Score = 131 (51.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 45/154 (29%), Positives = 69/154 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 86 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 145
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F G + G S + Q
Sbjct: 146 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FVGRARGRGGG--PSQNWNQGYSNY 200
Query: 152 YQQGMVYPSYGYAT--YGPEYVYPQGIYNPYQQY 183
+ QG Y +YGY + YG Y YN Y Y
Sbjct: 201 WNQG--YGNYGYNSQGYGGYGGYDYTGYNNYYGY 232
Score = 38 (18.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 203 QGYGNYGYNSQGYGG 217
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
++S F ++Y K+FVG L W S+ +R YF ++G + A V+ D+ G SK YGFV F
Sbjct: 1 MSSGFVRSSY-KLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFS 59
Query: 82 EPEAARRACADPTPFIDGR 100
+ +A A T F+DGR
Sbjct: 60 QRDAFNSASNQNTHFLDGR 78
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 48/149 (32%), Positives = 66/149 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL + T + + +F FG I E VV+ D+ T RS+G+GF+TF PE A A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 92 DPTPFIDGRRANCNLASLG----RPRPQVLYGRLRPATLFSGSTQATRGPYIGS------ 141
+DGR+ + A R +GR R + G G Y S
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYG 126
Query: 142 FGYQQPLPYNYQQGMVYPSYGYATYGPEY 170
+GY + YN + Y Y Y Y
Sbjct: 127 YGYGRSRDYNGRNQGGYDRYSGGNYRDNY 155
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 47/140 (33%), Positives = 64/140 (45%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL + T + + +F FG I E VV+ D+ T RS+G+GF+TF PE A A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 92 DPTPFIDGRRANCNLA--SLGRPRPQVLYGRLRPATLFSGSTQATRGPYI---GSFGYQQ 146
+DGR+ + A S R R R + G G Y G +GY
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGARGRGYSRGGGDQGYGNGRYDSRPGGYGYG- 125
Query: 147 PLPYNYQQGMVYPSYGYATY 166
Y Y + Y S +Y
Sbjct: 126 ---YGYGRSRDYGSRSQGSY 142
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 162 (62.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 93 PTPFIDGRRANCNLASL--GRPRPQ-VLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DG+ + A G+ P+ V G L P T S + + Y G+FG
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDT----SEEQIK-EYFGAFG 138
Score = 133 (51.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 48/171 (28%), Positives = 71/171 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
I + +A +P+ +Y + + G A G G+ G + N+
Sbjct: 175 RYHQIGSGKCEIKVA-----QPKEVYRQQQQQQ--KGGRGAAAGGRGGARGRGRGQGQNW 227
Query: 153 QQGMV-YPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQ 202
QG Y GY Y Y Q Y+ Y Y G N Y YGQ
Sbjct: 228 NQGFNNYYDQGYGNYNSAYGGDQN-YSGYGGY----DYTG-YNYGNYGYGQ 272
Score = 40 (19.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 17/50 (34%), Positives = 18/50 (36%)
Query: 138 YIGSFGYQQP-LPY-NYQQGMVYPSYG--YATYGPEYVYPQGIYNPYQQY 183
Y G GY Y NY G Y Y +TYG N YQ Y
Sbjct: 252 YSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 301
Score = 39 (18.8 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 200 YGQLGQTIPGSHAYTPVQGYGMPGHQIMQFG 230
YG G Y+ GY G+ +G
Sbjct: 239 YGNYNSAYGGDQNYSGYGGYDYTGYNYGNYG 269
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 155 (59.6 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E A
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 71 RPHKVDGR 78
Score = 118 (46.6 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
K+FVG + +T+ +R YF Q+G E++E ++TD+ +G+ +G+ FVTF + ++ +
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIE--IVTDRGSGKKRGFAFVTFDDRDSVDKIV 158
Query: 91 ADPTPFIDGRRANCNL 106
++G NC +
Sbjct: 159 IQKYHTVNGH--NCEV 172
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 171 (65.3 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVL 117
+ + A +D + + +A R +P+++
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
Score = 171 (65.3 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 54/192 (28%), Positives = 77/192 (40%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLG--IGMLGY---- 219
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIP 208
P +Q Y S Y P Y Y + + P+ P P G
Sbjct: 220 P-GFQ-ATTYASRSYTGLAPGYTYQFPEFRVERS--PLPSAPVLPELTAIPLTAYGPMAA 275
Query: 209 GSHAYTPVQGYG 220
+ A V+G G
Sbjct: 276 AAAAAAVVRGTG 287
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 171 (65.3 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81
L SP K+F+GGL+W+T E +R YF QFGE+ E +V+ D T RS+G+GFVTF
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 82 EPEAARRACADPTPFIDGRRANCNLASLGRPRPQVL 117
+ + A +D + + +A R +P+++
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105
Score = 165 (63.1 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 53/192 (27%), Positives = 77/192 (40%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YFEQF ++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLG--IGMLGY---- 219
Query: 149 PYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIP 208
P +Q Y S Y P Y Y + + P+ P P G
Sbjct: 220 P-GFQ-ATTYASRSYTGLAPGYTYQFPEFRV--ERTPLPSAPVLPELTAIPLTAYGPMAA 275
Query: 209 GSHAYTPVQGYG 220
+ A V+G G
Sbjct: 276 AAAAAAVVRGTG 287
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 171 (65.3 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 30/71 (42%), Positives = 49/71 (69%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGG++WET +ET YF +FGE++++V++TD+ TG +G+GFVTF + A + +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 93 PTPFIDGRRAN 103
ID R+ +
Sbjct: 127 DH-VIDDRKVD 136
Score = 149 (57.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 55/191 (28%), Positives = 80/191 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL + + ++ YF +G+I+E ++ D +TGRS+G+GFVTF+ ++ R +D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
G + + R P+ GR + S G Y Y +Y
Sbjct: 218 GKVHELGDKQ----VEIKRAEPKRT-GRDNSFRSYGAS-----GKYDQEDSYSGKANEDY 267
Query: 153 QQGMVYPSYG-YATY-GPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGS 210
Y YG Y Y G V P G Y Y YG G + Y G G + GS
Sbjct: 268 SMYSGYGGYGGYGAYAGNSMVNPAGFYGYGGGYGYGYGYGGQMFNMGYGAG--GYSHMGS 325
Query: 211 -HAYTPVQGYG 220
+ YG
Sbjct: 326 GYGVAAAAAYG 336
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 159 (61.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 91 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 139
Score = 129 (50.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 44/151 (29%), Positives = 69/151 (45%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 116 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 175
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F+G + G S + Q
Sbjct: 176 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FAGRARGRGGG--PSQNWNQGYSNY 230
Query: 152 YQQGMVYPSYGYAT--YGPEYVYPQGIYNPY 180
+ QG Y +YGY + YG Y YN Y
Sbjct: 231 WNQG--YGNYGYNSQGYGGYGGYDYTGYNNY 259
Score = 38 (18.4 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 233 QGYGNYGYNSQGYGG 247
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 154 (59.3 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 35/113 (30%), Positives = 60/113 (53%)
Query: 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93
+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 94 TPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 108
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 154 (59.3 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 47/149 (31%), Positives = 72/149 (48%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+++T + + F ++G+I E VV+ D+ T RS+G+GFVTF E A+ A A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 93 PT-PFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+DGR+ + A G+ G R + G G G GY ++
Sbjct: 67 MNGKTVDGRQIRVDQA--GKSSND-RRGGYRGGSSGGGRGFFRGGRGRGGGGYGGSSRFD 123
Query: 152 YQQGMVYPSYGYATYGPEYVYPQGIYNPY 180
+ G GY + P+Y Y G + Y
Sbjct: 124 NRSGG-----GYGGWIPDY-YSSGRESSY 146
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 159 (61.0 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 206
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 167 (63.8 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 77/261 (29%), Positives = 114/261 (43%)
Query: 22 LNSP-----FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
LN+P +G ++FVGG+ ++T +R++F Q+G + E ++ D+ G SKGYG
Sbjct: 18 LNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYG 76
Query: 77 FVTFREPEAARRAC--ADPTPFIDGRRANCNLA----SLGRPRPQVLYGRLRPATLFSGS 130
FVTF E A++ A+ + D ++ N A +G PR ++ PA +G+
Sbjct: 77 FVTFETQEDAQKILQEAEKLNYKD-KKLNIGPAIRKQQVGIPRSSIM-----PA---AGT 127
Query: 131 TQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN-PYQQYVPIYGV 189
T S GY PY Y G+ Y T P + + + P PIY
Sbjct: 128 MYLTT-----STGY----PYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQ 178
Query: 190 PGTVNTAVYPY--GQLGQTIPGSHAYTPVQGYGMPGH------QIMQFGG---PNLNAIT 238
P A Y GQ ++P A + Y P +I Q GG P L+ +
Sbjct: 179 PAYHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLME 238
Query: 239 TS-PLPT----VQAPYPTVHA 254
TS P P VQA Y V+A
Sbjct: 239 TSVPEPYSDHGVQATYHQVYA 259
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 153 (58.9 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K++VG L+++ ++ ++ +F Q+GEI EA +I D+ TGRSKG+ F+T+ +AA+ A +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 93 PTPF-IDGRRANCNLA 107
+ GR+ N+A
Sbjct: 79 ANGIDLQGRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 153 (58.9 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K++VG L+++ ++ ++ +F Q+GEI EA +I D+ TGRSKG+ F+T+ +AA+ A +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 93 PTPF-IDGRRANCNLA 107
+ GR+ N+A
Sbjct: 79 ANGIDLQGRKIRVNIA 94
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 153 (58.9 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 48/148 (32%), Positives = 66/148 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL + T + + +F FG I E VV+ D+ T RS+G+GF+TF PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 92 DPTPFIDGRRANCNLA--SLGRPRPQVL--YGRLRPATLFSGSTQATRGPYIG-----SF 142
+DGR+ + A S R +GR R + G G Y +
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDSRPGGYGY 126
Query: 143 GYQQPLPYNYQQGMVYPSYGYATYGPEY 170
GY + Y+ QG Y Y Y Y
Sbjct: 127 GYGRSRDYSGSQGG-YDRYSGGNYRDNY 153
>UNIPROTKB|E2REM2 [details] [associations]
symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
Length = 207
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 40/115 (34%), Positives = 57/115 (49%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FE +G + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLQKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATV 64
Query: 84 EAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPY 138
E A +DGR A + R Q L L +F G + G Y
Sbjct: 65 EEVDAAMNARPHKVDGRVVEPKRA-VSREDSQTLDAHLTVKKIFGGGSYNDFGTY 118
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 25/68 (36%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 93 PTPFIDGR 100
++G+
Sbjct: 139 KEHKLNGK 146
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 152 (58.6 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 50/149 (33%), Positives = 67/149 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL + T + + +F FG I E VV+ D+ T RS+G+GF+TF PE A A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 92 DPTPFIDGRRANCNLA--SLGRPRPQVL--YGRLRPATLFSGSTQATRGPYI---GSFGY 144
+DGR+ + A S R +GR R + G G Y G +GY
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDSRPGGYGY 126
Query: 145 QQPLPYNYQ---QGMVYPSYGYATYGPEY 170
+Y QG Y Y Y Y
Sbjct: 127 GYGRSRDYSGRSQGG-YDRYSGGNYRDNY 154
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 151 (58.2 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 52/153 (33%), Positives = 69/153 (45%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL + T + +F FG I E VV+ D+ T RS+G+GF+TF PE A A A
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSF-GYQQPLPY 150
+DGR+ + A G+ R F G + P G GY Y
Sbjct: 67 MNGESLDGRQIRVDHA--GKS------ARGSRGGAFGGYERGRGYPRGGGDQGYGSGR-Y 117
Query: 151 NYQQGMVYPSYGYATYGPEYVY---PQGIYNPY 180
+ + G YGY YG Y QG Y+ Y
Sbjct: 118 DNRPGAYGFGYGYG-YGRSRDYGGRSQGGYDRY 149
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 165 (63.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 78/261 (29%), Positives = 113/261 (43%)
Query: 22 LNSP-----FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
LN+P +G ++FVGG+ ++T +R++F Q+G + E ++ D+ G SKGYG
Sbjct: 30 LNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYG 88
Query: 77 FVTFREPEAARRAC--ADPTPFIDGRRANCNLA----SLGRPRPQVLYGRLRPATLFSGS 130
FVTF E A++ A+ + D ++ N A +G PR ++ PA +G+
Sbjct: 89 FVTFETQEDAQKILQEAEKLNYKD-KKLNIGPAIRKQQVGIPRSSIM-----PA---AGT 139
Query: 131 TQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN-PYQQYVPIYGV 189
T S GY PY Y G+ Y T P + I + P P+Y
Sbjct: 140 MYLTT-----STGY----PYTYHNGVAYFHTPEVTSVPPPWPSRSISSSPVMVAQPVYQQ 190
Query: 190 PGTVNTAVYPY--GQLGQTIPGSHAYTPVQGYGMPGH------QIMQFGG---PNLNAIT 238
P A Y GQ +P S A T Y P +I Q GG P L+ +
Sbjct: 191 PAYHYQAPAQYLPGQWQWGVPQSPASTAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLME 250
Query: 239 TS-PLPT----VQAPYPTVHA 254
S P P VQA Y V+A
Sbjct: 251 ASVPEPYSDHGVQATYHQVYA 271
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 34/87 (39%), Positives = 55/87 (63%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLASLGRP-RPQVL 117
+DGR+ + +P RP VL
Sbjct: 67 MNGKSVDGRQIRVD-----QPLRPSVL 88
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 150 (57.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 159 (61.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 106 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 154
Score = 135 (52.6 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 51/185 (27%), Positives = 82/185 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 131 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 190
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F+G + G S + Q
Sbjct: 191 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FAGRARGRGGG--PSQNWNQGYSNY 245
Query: 152 YQQGMVYPSYGYATYGPEYVYPQGI-YNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGS 210
+ QG Y +YGY + G Y G Y Y Y YG G + YG++ +
Sbjct: 246 WNQG--YGNYGYNSQG--YGGYGGYDYTGYNNY---YGY-GDYSNQQSGYGKVSRRGGHQ 297
Query: 211 HAYTP 215
++Y P
Sbjct: 298 NSYKP 302
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 248 QGYGNYGYNSQGYGG 262
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 155 (59.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 35/113 (30%), Positives = 61/113 (53%)
Query: 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93
+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 94 TPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G+FG
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGAFG 108
Score = 131 (51.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 45/154 (29%), Positives = 69/154 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F G + G S + Q
Sbjct: 145 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FVGRARGRGGG--PSQNWNQGYSNY 199
Query: 152 YQQGMVYPSYGYAT--YGPEYVYPQGIYNPYQQY 183
+ QG Y +YGY + YG Y YN Y Y
Sbjct: 200 WNQG--YGNYGYNSQGYGGYGGYDYTGYNNYYGY 231
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 202 QGYGNYGYNSQGYGG 216
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 161 (61.7 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 33/74 (44%), Positives = 47/74 (63%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D Y + F+GGLAW T +R FE++G ++EA V+ DK +GRS+G+GF+TF E +A
Sbjct: 4 DPEY-RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMD 62
Query: 88 RACADPTPF-IDGR 100
A A +DGR
Sbjct: 63 EAIAAMNGMDLDGR 76
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 162 (62.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 93 PTPFIDGRRANCNLASL--GRPRPQ-VLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DG+ + A G+ P+ V G L P T S + + Y G+FG
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDT----SEEQIK-EYFGAFG 257
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 48/171 (28%), Positives = 71/171 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
I + +A +P+ +Y + + G A G G+ G + N+
Sbjct: 294 RYHQIGSGKCEIKVA-----QPKEVYRQQQQQQ--KGGRGAAAGGRGGTRGRGRGQGQNW 346
Query: 153 QQGMV-YPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQ 202
QG Y GY Y Y Q Y+ Y Y G N Y YGQ
Sbjct: 347 NQGFNNYYDQGYGNYNSAYGGDQN-YSGYGGY----DYTG-YNYGNYGYGQ 391
Score = 40 (19.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 17/50 (34%), Positives = 18/50 (36%)
Query: 138 YIGSFGYQQP-LPY-NYQQGMVYPSYG--YATYGPEYVYPQGIYNPYQQY 183
Y G GY Y NY G Y Y +TYG N YQ Y
Sbjct: 371 YSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 200 YGQLGQTIPGSHAYTPVQGYGMPGHQIMQFG 230
YG G Y+ GY G+ +G
Sbjct: 358 YGNYNSAYGGDQNYSGYGGYDYTGYNYGNYG 388
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 162 (62.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 93 PTPFIDGRRANCNLASL--GRPRPQ-VLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DG+ + A G+ P+ V G L P T S + + Y G+FG
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDT----SEEQIK-EYFGAFG 257
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 48/171 (28%), Positives = 71/171 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
I + +A +P+ +Y + + G A G G+ G + N+
Sbjct: 294 RYHQIGSGKCEIKVA-----QPKEVYRQQQQQQ--KGGRGAAAGGRGGTRGRGRGQGQNW 346
Query: 153 QQGMV-YPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQ 202
QG Y GY Y Y Q Y+ Y Y G N Y YGQ
Sbjct: 347 NQGFNNYYDQGYGNYNSAYGGDQN-YSGYGGY----DYTG-YNYGNYGYGQ 391
Score = 40 (19.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 17/50 (34%), Positives = 18/50 (36%)
Query: 138 YIGSFGYQQP-LPY-NYQQGMVYPSYG--YATYGPEYVYPQGIYNPYQQY 183
Y G GY Y NY G Y Y +TYG N YQ Y
Sbjct: 371 YSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 200 YGQLGQTIPGSHAYTPVQGYGMPGHQIMQFG 230
YG G Y+ GY G+ +G
Sbjct: 358 YGNYNSAYGGDQNYSGYGGYDYTGYNYGNYG 388
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 162 (62.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 93 PTPFIDGRRANCNLASL--GRPRPQ-VLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DG+ + A G+ P+ V G L P T S + + Y G+FG
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDT----SEEQIK-EYFGAFG 257
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 48/171 (28%), Positives = 71/171 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
I + +A +P+ +Y + + G A G G+ G + N+
Sbjct: 294 RYHQIGSGKCEIKVA-----QPKEVYRQQQQQQ--KGGRGAAAGGRGGTRGRGRGQGQNW 346
Query: 153 QQGMV-YPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQ 202
QG Y GY Y Y Q Y+ Y Y G N Y YGQ
Sbjct: 347 NQGFNNYYDQGYGNYNSAYGGDQN-YSGYGGY----DYTG-YNYGNYGYGQ 391
Score = 40 (19.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 17/50 (34%), Positives = 18/50 (36%)
Query: 138 YIGSFGYQQP-LPY-NYQQGMVYPSYG--YATYGPEYVYPQGIYNPYQQY 183
Y G GY Y NY G Y Y +TYG N YQ Y
Sbjct: 371 YSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 200 YGQLGQTIPGSHAYTPVQGYGMPGHQIMQFG 230
YG G Y+ GY G+ +G
Sbjct: 358 YGNYNSAYGGDQNYSGYGGYDYTGYNYGNYG 388
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 149 (57.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T + + + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 149 (57.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T + + + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 149 (57.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T + + + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 156 (60.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 8 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 67
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 68 AARPHSIDGR 77
Score = 144 (55.7 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 93 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 152
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 153 PVDKIVLQKYHTINGHNAEVRKA-LSRQEMQ 182
Score = 44 (20.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 255 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 313
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 314 NMGGPYGG-GNYGPGGSGGSG--GYG 336
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 156 (60.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 16 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 75
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 76 AARPHTIDGR 85
Score = 144 (55.7 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 101 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 160
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 161 PVDKIVLQKYHTINGHNAEVRKA-LSRQEMQ 190
Score = 44 (20.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 263 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 321
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 322 NMGGPYGG-GNYGPGGSGGSG--GYG 344
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 156 (60.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 19 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 78
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 79 AARPHSIDGR 88
Score = 144 (55.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 104 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 163
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 164 PVDKIVLQKYHTINGHNAEVRKA-LSRQEMQ 193
Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 266 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 324
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 325 NMGGPYGG-GNYGPGGSGGSG--GYG 347
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 156 (60.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 80 AARPHSIDGR 89
Score = 144 (55.7 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 165 PVDKIVLQKYHTINGHNAEVRKA-LSRQEMQ 194
Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 267 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 325
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 326 NMGGPYGG-GNYGPGGSGGSG--GYG 348
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 156 (60.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 80 AARPHSIDGR 89
Score = 144 (55.7 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 165 PVDKIVLQKYHTINGHNAEVRKA-LSRQEMQ 194
Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 267 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 325
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 326 NMGGPYGG-GNYGPGGSGGSG--GYG 348
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 156 (60.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 80 AARPHSIDGR 89
Score = 144 (55.7 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 165 PVDKIVLQKHHTINGHNAEVRKA-LSRQEMQ 194
Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 267 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 325
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 326 NMGGPYGG-GNYGPGGSGGSG--GYG 348
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 156 (60.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 80 AARPHSIDGR 89
Score = 144 (55.7 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 165 PVDKIVLQKYHTINGHNAEVRKA-LSRQEMQ 194
Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 267 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGSYNDFGNYNQQPSNYGPMKSGNFGGSR 325
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 326 NMGGPYGG-GNYGPGGSGGSG--GYG 348
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 156 (60.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 80 AARPHSIDGR 89
Score = 143 (55.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 165 PVDKIFLQKYHTINGHNAEVRKA-LSRQEMQ 194
Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 267 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 325
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 326 NMGGPYGG-GNYGPGGSGGSG--GYG 348
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 165 (63.1 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 61/232 (26%), Positives = 96/232 (41%)
Query: 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
T K+FVGGL+ T E +++YF+QFG++ +A+++ DK T R +G+GFVTF + +
Sbjct: 106 TRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEK 165
Query: 89 ACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPL 148
C I+ + C A R R + G G IG GY
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKEVMSPTGSSRGRARVMPYGMDAFMLG--IGMLGYPGFQ 223
Query: 149 PYNYQQGMVYPSY--GYATYGPEYVYPQG--IYNPYQQYVPIYGVPGTVNTAVYPYGQLG 204
Y G Y S GY PE+ + + +P+ + +P T +
Sbjct: 224 ATTYA-GRSYTSLTPGYTYQFPEFHLERTPLLTSPHPP--ELTAIPLTAYNPMAAAAAAA 280
Query: 205 QTIPGSHAYTPVQGYGM-----PGHQIMQFGGPNLNAITTSPLPTVQAPYPT 251
+ GS TP + G PG +G N + +S L + +P P+
Sbjct: 281 AVVRGS---TPSRSAGFLGTSSPGPMADLYGTANQESAVSSYL-SAASPAPS 328
Score = 157 (60.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T E ++ YF +FGE+ E++V+ D T RS+G+GFVTF + + A
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 93 PTPFIDGRRANCNLASLGRPRPQVL 117
+D + + +A R +P+++
Sbjct: 81 TRHELDSKTIDPKVAFPRRAQPKLV 105
>UNIPROTKB|E9PSF1 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955 HGNC:HGNC:15818
IPI:IPI00974044 ProteinModelPortal:E9PSF1 SMR:E9PSF1
Ensembl:ENST00000342690 ArrayExpress:E9PSF1 Bgee:E9PSF1
Uniprot:E9PSF1
Length = 77
Score = 148 (57.2 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 27/43 (62%), Positives = 35/43 (81%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG 70
DTT+TK+FVGGL + T ++R+YFE FG+I EAVVITD+ TG
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 72
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 146 (56.5 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 24/69 (34%), Positives = 47/69 (68%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL +T + ++F ++GEI ++V++ D++TG+ +G+GF+TF +P + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 93 PTPFIDGRR 101
T I+G++
Sbjct: 80 -THVINGKQ 87
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 53/168 (31%), Positives = 71/168 (42%)
Query: 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
D K+FVGG+ + ++ +F ++G ++E VI D T RS+G+GFV F E
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 164
Query: 88 RACADPTPFIDGRRANCNLA------SLGRPRPQVLYGRLRPATLFSGSTQATRG-PYIG 140
+ ID + SL R P YG P S + A+ G PY G
Sbjct: 165 ELLSKGN-MIDMADTQVEIKKAEPKKSLNRSPPS--YGS-HPRGRSSNDSYASYGGPY-G 219
Query: 141 SF--GYQQPL-PYNYQQGMV--YPS-YGYA--TYGPEYVYPQGIYNPY 180
F GY P P G Y YGY + GPE+ G YN Y
Sbjct: 220 GFDGGYGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEF---GGGYNNY 264
Score = 57 (25.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 23/77 (29%), Positives = 28/77 (36%)
Query: 118 YGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN-----YQQGMVYPSYGYATYGPEYVY 172
YGR F G G +G + + PL Y+ Y G YG G Y
Sbjct: 248 YGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGGEGYGRGGEGAYLGY 307
Query: 173 PQGIYNPYQQYV-PIYG 188
P+G Y Y P YG
Sbjct: 308 PRGGGEGYGGYGGPGYG 324
Score = 41 (19.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 163 YATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPG-SHAYTPVQGYGM 221
YA+YG Y G Y + +G P + Y YG+ G P Y G +
Sbjct: 211 YASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGYGYGR-GSVGPEFGGGYNNYGGGSL 269
Query: 222 PGHQ 225
G++
Sbjct: 270 GGYR 273
Score = 40 (19.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 218 GYGMPGHQIMQFGGP 232
GYG P I GGP
Sbjct: 224 GYGHPPGPIRSHGGP 238
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 164 (62.8 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV F++ + +
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 93 PTPFIDGRRANCNLASL--GRPRPQ-VLYGRLRPATLFSGSTQATRGPYIGSFG 143
+DG+ + A G+ P+ V G L P T S + + Y G+FG
Sbjct: 127 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDT----SEEQIK-EYFGAFG 175
Score = 131 (51.2 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 52/177 (29%), Positives = 76/177 (42%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
KVFVGGL+ +T E ++ YF FGEI + D T +G+ F+T+ + E ++
Sbjct: 152 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 211
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYNY 152
I + +A +P+ +Y R + G + A+ G G G + N+
Sbjct: 212 RYHQIGSGKCEIKVA-----QPKEVY-RQQQQQQKGGKSNASGGRG-GGRGRGRGQGQNW 264
Query: 153 QQGMV-YPSYGYATYGPEYV---YP-QGIYNPYQQY-VPIYGV-PGTVNTAVYPYGQ 202
QG Y GY Y Y Y G Y+ Y Y P YG PG + Y GQ
Sbjct: 265 NQGFNNYYDQGYGNYNSAYSDQSYSGYGGYD-YSGYNYPNYGYGPGYTD---YSAGQ 317
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 147 (56.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
T +K+FVGGL+ T E ++ F FG+I++AVV+ D+ +G S+G+GFVT+ E A A
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
Query: 90 C-ADPTPFIDGRRANCNLASLG 110
A +DGR + A G
Sbjct: 94 MQAMQNKELDGRIIGVHPADSG 115
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 151 (58.2 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+++T E++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E A
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 93 PTPFIDGR 100
+DGR
Sbjct: 68 RPHKVDGR 75
Score = 119 (46.9 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVG +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 91 PGAHLTVKKIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 147
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 148 SVDKIVIQKYHTVNGH--NCEV 167
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 159 (61.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 206
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 51/185 (27%), Positives = 82/185 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F+G + G S + Q
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FAGRARGRGGG--PSQNWNQGYSNY 297
Query: 152 YQQGMVYPSYGYATYGPEYVYPQGI-YNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGS 210
+ QG Y +YGY + G Y G Y Y Y YG G + YG++ +
Sbjct: 298 WNQG--YGNYGYNSQG--YGGYGGYDYTGYNNY---YGY-GDYSNQQSGYGKVSRRGGHQ 349
Query: 211 HAYTP 215
++Y P
Sbjct: 350 NSYKP 354
Score = 38 (18.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 300 QGYGNYGYNSQGYGG 314
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 159 (61.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 206
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 51/185 (27%), Positives = 82/185 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F+G + G S + Q
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FAGRARGRGGG--PSQNWNQGYSNY 297
Query: 152 YQQGMVYPSYGYATYGPEYVYPQGI-YNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGS 210
+ QG Y +YGY + G Y G Y Y Y YG G + YG++ +
Sbjct: 298 WNQG--YGNYGYNSQG--YGGYGGYDYTGYNNY---YGY-GDYSNQQSGYGKVSRRGGHQ 349
Query: 211 HAYTP 215
++Y P
Sbjct: 350 NSYKP 354
Score = 38 (18.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 300 QGYGNYGYNSQGYGG 314
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 159 (61.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 206
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 51/185 (27%), Positives = 82/185 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F+G + G S + Q
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FAGRARGRGGG--PSQNWNQGYSNY 297
Query: 152 YQQGMVYPSYGYATYGPEYVYPQGI-YNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGS 210
+ QG Y +YGY + G Y G Y Y Y YG G + YG++ +
Sbjct: 298 WNQG--YGNYGYNSQG--YGGYGGYDYTGYNNY---YGY-GDYSNQQSGYGKVSRRGGHQ 349
Query: 211 HAYTP 215
++Y P
Sbjct: 350 NSYKP 354
Score = 38 (18.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 300 QGYGNYGYNSQGYGG 314
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 159 (61.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 206
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 51/185 (27%), Positives = 82/185 (44%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F+G + G S + Q
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FAGRARGRGGG--PSQNWNQGYSNY 297
Query: 152 YQQGMVYPSYGYATYGPEYVYPQGI-YNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGS 210
+ QG Y +YGY + G Y G Y Y Y YG G + YG++ +
Sbjct: 298 WNQG--YGNYGYNSQG--YGGYGGYDYTGYNNY---YGY-GDYSNQQSGYGKVSRRGGHQ 349
Query: 211 HAYTP 215
++Y P
Sbjct: 350 NSYKP 354
Score = 38 (18.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 300 QGYGNYGYNSQGYGG 314
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 155 (59.6 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 40/115 (34%), Positives = 57/115 (49%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+++T +++ F ++G I + VI D+ T RS+G+GFVTF PE A+ A A
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 93 PT-PFIDGRRANCNLASLGRPRPQVLYGRLRPAT--LFSGSTQATRGPYIGSFGY 144
+DGR + A R G R F GS G Y G Y
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGGRSGGFRGGSRGGGRGFFRGSRGRGGGGYGGDRSY 138
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 162 (62.1 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPF-IDGR 100
E A + TP +DGR
Sbjct: 66 EEVD-AAMNTTPHKVDGR 82
Score = 136 (52.9 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + + G NC +
Sbjct: 158 SVDKIVIQKYHTVKGH--NCEV 177
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 156 (60.0 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 25 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 84
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 85 EEVDAAMNARPHKVDGR 101
Score = 138 (53.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 117 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 176
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 177 SVDKIVIQKYHTVNGH--NCEV 196
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 153 (58.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL+++T E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 8 FRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 67
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 68 AARPHSIDGR 77
Score = 138 (53.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YF ++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 93 PGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 152
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 153 PVDKIVLQKYHTINGHNAEVRKA-LSRQEMQ 182
Score = 44 (20.5 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 255 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 313
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 314 NMGGPYGG-GNYGPGGSGGSG--GYG 336
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 145 (56.1 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T E ++ YF +FGE+ E +V+ D T RS+G+GFVT+ + + A
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDKVLAQ 82
Query: 93 PTPFIDGR 100
+D +
Sbjct: 83 NRHELDSK 90
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 156 (60.0 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FG++++ + D TGRS+G+GFV F+E E+ +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 137 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 185
Score = 139 (54.0 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 52/184 (28%), Positives = 83/184 (45%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 221
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F+G + G S + Q
Sbjct: 222 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FAGRARGRGGG--PSQNWNQGYSNY 276
Query: 152 YQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGSH 211
+ QG Y SYGY + G Y G Y+ Y Y YG G + YG++ + +
Sbjct: 277 WNQG--YGSYGYNSQG--YG-GYGGYD-YTGYNSYYGY-GDYSNQQSGYGKVSRRGGHQN 329
Query: 212 AYTP 215
+Y P
Sbjct: 330 SYKP 333
Score = 39 (18.8 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 279 QGYGSYGYNSQGYGG 293
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 158 (60.7 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL +ET E++R +FEQ+G + E VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 119 (46.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 80
K+FVGG+ +T+ +R Y EQ+G+I ++TD+ +G+ +G+ FVTF
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTF 148
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 160 (61.4 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 61/198 (30%), Positives = 83/198 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL + + E ++ YF QFG I +A VITDK+TG+ +G+GFV F + ++A +A
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVM 157
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYGRL----RPATLFSGSTQATRGPYIGSFGYQQPL 148
I G + A + GR R SG RG Y +GYQ
Sbjct: 158 KFHSICGHKVEVKKALTKQEMQSTGGGRGGRGGRGMGRGSGFGGGGRGGYYNDYGYQNN- 216
Query: 149 PYNYQQGMVYPSY-GYAT-YGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYP-YGQLGQ 205
+ G Y S GY Y + G N Y + YG + A+ YG
Sbjct: 217 GFGNNSG--YDSQNGYGGGYSDQMGGGYGNGNGYSDFGEGYGQQASGYGAMKTGYGNYSS 274
Query: 206 TIPGSHAYTPVQGYGMPG 223
S Y G G G
Sbjct: 275 GRQSSGPYPRGGGGGGSG 292
Score = 133 (51.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL +T E +R +FEQ+G++ + VV+ ++ RS+ +GFVT+ E A A +
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 93 PTPFIDGRRANCNLA 107
+DG + A
Sbjct: 67 RPHIVDGNNVDLKRA 81
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
++FVG L W + +R YF +FG ++ A VI DK TG SKGYGFV+F A + +
Sbjct: 16 RIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKIENE 75
Query: 93 PTPFIDGRRAN 103
++G N
Sbjct: 76 QKHILEGNYLN 86
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+ VGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+ VGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+ VGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
+++VG L + + +R FE FG+I V++ D +TGRSKGYGF+TF + E ARRA
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 93 PTPF-IDGR 100
F + GR
Sbjct: 74 LNGFELAGR 82
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 25/57 (43%), Positives = 42/57 (73%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 25/57 (43%), Positives = 42/57 (73%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 144 (55.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+F+GGL +ET + + + F ++G I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 66 MNGKSVDGRQIRVDQA 81
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 159 (61.0 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 75/258 (29%), Positives = 113/258 (43%)
Query: 22 LNSP-----FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
LN+P +G ++FVGG+ ++T +R++F Q+G + E ++ D+ G SKGYG
Sbjct: 18 LNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYG 76
Query: 77 FVTFREPEAARRAC--ADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQAT 134
F+TF E A++ A+ + D ++ N A + + + + L PA +G+ T
Sbjct: 77 FITFETQEDAQKILQEAEKLNYKD-KKLNIGPA-IRKQQVGIPRSSLMPA---AGTMYLT 131
Query: 135 RGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN-PYQQYVPIYGVPGTV 193
S GY PY Y G+ Y T P + I + P P+Y P
Sbjct: 132 T-----STGY----PYTYHNGVAYFHTPEVTSVPPSWPSRSISSSPVMVAQPVYQQPAYH 182
Query: 194 NTA---VYPYGQLGQTIPGSHAYTPVQGYGMPGH------QIMQFGG---PNLNAITTS- 240
A P GQ +P S A + Y P +I Q GG P L+ + TS
Sbjct: 183 YQAPAQCLP-GQWQWGVPQSPASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETSV 241
Query: 241 PLPT----VQAPYPTVHA 254
P P VQA Y V+A
Sbjct: 242 PEPYSDHGVQAAYHQVYA 259
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 156 (60.0 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FG++++ + D TGRS+G+GFV F+E E+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 204
Score = 139 (54.0 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 52/184 (28%), Positives = 83/184 (45%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F+G + G S + Q
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FAGRARGRGGG--PSQNWNQGYSNY 295
Query: 152 YQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGSH 211
+ QG Y SYGY + G Y G Y+ Y Y YG G + YG++ + +
Sbjct: 296 WNQG--YGSYGYNSQG--YG-GYGGYD-YTGYNSYYGY-GDYSNQQSGYGKVSRRGGHQN 348
Query: 212 AYTP 215
+Y P
Sbjct: 349 SYKP 352
Score = 39 (18.8 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 298 QGYGSYGYNSQGYGG 312
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 156 (60.0 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FG++++ + D TGRS+G+GFV F+E E+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 204
Score = 139 (54.0 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 52/184 (28%), Positives = 83/184 (45%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 93 PTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQPLPYN 151
+ + +A S + + Q +G R F+G + G S + Q
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGG--FAGRARGRGGG--PSQNWNQGYSNY 295
Query: 152 YQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQLGQTIPGSH 211
+ QG Y SYGY + G Y G Y+ Y Y YG G + YG++ + +
Sbjct: 296 WNQG--YGSYGYNSQG--YG-GYGGYD-YTGYNSYYGY-GDYSNQQSGYGKVSRRGGHQN 348
Query: 212 AYTP 215
+Y P
Sbjct: 349 SYKP 352
Score = 39 (18.8 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 QGYGMPGHQIMQFGG 231
QGYG G+ +GG
Sbjct: 298 QGYGSYGYNSQGYGG 312
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 143 (55.4 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
T +FV GL+ T SE +R F QFGE+ +A V+TD+ +G SKG+GFV + E + + A
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 92 DPT-PFIDGRRANCNLASLGRPRPQ 115
F+DG A RPR Q
Sbjct: 116 GMDGKFLDGWVI---FAEYARPREQ 137
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 159 (61.0 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV F+E E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 206
Score = 121 (47.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 158 (60.7 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91
+K+FVGG+++ T +R F ++GE+++A +I D+ TGRS+G+ FVTF E A A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 92 DPTPFIDGRRANCNLAS 108
+ GRR N A+
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLA 107
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 66/217 (30%), Positives = 91/217 (41%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL + + + + +F QFG I ++ VITDK+TG+ +G+GFV F + ++A +A
Sbjct: 100 KIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVL 159
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYG----RLRPATLFSGSTQ----ATRGPYIGSFGY 144
I+G + A L + Q G R R G Q RG G +G
Sbjct: 160 KFHMINGHKVEVKKA-LTKQEIQAAGGARGGRGRGGGRGMGRNQNGFGGGRGGGYGGYGG 218
Query: 145 QQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYGQL- 203
Y G SYG YG Y G Y + + YG + YGQ
Sbjct: 219 GYGGGYGGNDGGYGGSYGSGGYGGGY--GGGYGGGYGEQMGGYGGGNDYSDFGSGYGQQS 276
Query: 204 --------GQTIPG-SHAYTPVQGYGMPGHQIMQFGG 231
G T G S A P G G PG+ +GG
Sbjct: 277 SGYGPMKGGNTYGGRSGAPYPRGGGGGPGYGRGGYGG 313
Score = 141 (54.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGL +T ++ +R YFEQFG + + VV+ + RS+ +GFVT+ E A A A
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 93 PTPFIDGRRANCNLA----SLGRP 112
+DG+ A GRP
Sbjct: 69 RPHVVDGKNVEVKRAVAREDAGRP 92
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 156 (60.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 154 (59.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 8 FCKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAM 67
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 68 AARPHSIDGR 77
Score = 143 (55.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 38/121 (31%), Positives = 60/121 (49%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 93 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHD 151
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRL-RPATLFSGSTQA---TRGPYIG 140
+ +G A A + +V R RP TL G ++ GP G
Sbjct: 152 PVDKIVLQKYHTKNGHNAEVRKALSRQEMQEVQNSRSGRPRTLLFGDSRGGGGNSGPGPG 211
Query: 141 S 141
S
Sbjct: 212 S 212
Score = 36 (17.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 19/58 (32%), Positives = 22/58 (37%)
Query: 128 SGSTQATRGPYIGSFGYQQPLP-YNYQQGMV---YPSYGYATYGPEY--VYPQGIYNP 179
SG+ + G G GY P Y Q G Y +YG YG Y G Y P
Sbjct: 240 SGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGRNMGGPYGGGNYGP 297
>UNIPROTKB|F1SI86 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:CU469305 Ensembl:ENSSSCT00000017510 Uniprot:F1SI86
Length = 295
Score = 157 (60.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 78/262 (29%), Positives = 113/262 (43%)
Query: 22 LNSP-----FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
LN+P +G ++FVGG+ ++T +R++F Q+G + E ++ D+ G SKGYG
Sbjct: 30 LNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYG 88
Query: 77 FVTFREPEAARRAC--ADPTPFIDGRRANCNLA----SLGRPRPQVLYGRLRPATLFSGS 130
FVTF E A+R A+ + D ++ N A +G PR ++ PA +G+
Sbjct: 89 FVTFETQEDAQRILQEAEKLNYKD-KKLNIGPAIRKQQVGIPRSSIM-----PA---AGT 139
Query: 131 TQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN-PYQQYVPIYGV 189
T S GY PY Y G+ Y T P + I + P P+Y
Sbjct: 140 MYLTT-----STGY----PYTYHNGVAYFHSPEVTSVPPSWPSRSISSSPVMVAQPVYQQ 190
Query: 190 PGTVNTA---VYPYGQLGQTIPGSHAYTPVQGYGMPGH------QIMQFGG---PNLNAI 237
P A P GQ +P S A + Y P +I Q GG P L+ +
Sbjct: 191 PAYHYQAPAQCLP-GQWQWGVPQSPASSASFLYLQPSEVIYQPVEIAQDGGCVPPPLSLM 249
Query: 238 TTS-PLPT----VQAPYPTVHA 254
S P P VQA Y V+A
Sbjct: 250 EASVPEPYSDHGVQATYHQVYA 271
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 152 (58.6 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL++ET +++R +F+++G + + VV+ D T RS+G+GFVT+ E CA
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73
Query: 93 PTPFIDGR 100
P +DGR
Sbjct: 74 PHK-VDGR 80
Score = 128 (50.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 35/120 (29%), Positives = 57/120 (47%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T +R YFE++G+I V+ D+ +G+ +G+ FVTF + +
Sbjct: 96 PGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHD 155
Query: 85 AARRACADPTPFIDGRRANCNLA-SLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
+ I+G NC + +L + Q G R SG+ G + G G
Sbjct: 156 TVDKIVVQKYHTINGH--NCEVKKALSKQEMQSA-GSQRGCGGGSGNFMGHGGNFGGGGG 212
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 145 (56.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 28 DTT-YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAA 86
DT+ + +FVG L+ E E + + F FG + EA V+ D TGRS+GYGFV FR+ A
Sbjct: 171 DTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDA 230
Query: 87 RRACADPT-PFIDGRRANCNLASL-GRP 112
+A + ++ R CN A+ G+P
Sbjct: 231 EKALSSMDGEWLGSRAIRCNWANQKGQP 258
Score = 101 (40.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93
++VGGL + +R+ FE G + +I DKN + YGFV + +P AA RA
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDDPGAADRAMQT- 144
Query: 94 TPFIDGRRAN 103
++GRR +
Sbjct: 145 ---LNGRRVH 151
Score = 54 (24.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 21/65 (32%), Positives = 26/65 (40%)
Query: 173 PQGIYNPYQQYVPIY----GVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPG-HQIM 227
PQG ++P Q + P G PGT +T YG GQ + P G Q M
Sbjct: 380 PQGNFDPSQAFSPQSAGGPGFPGTPSTYFPQYG--GQFSGPQGNFGPNSAQSPAGFQQPM 437
Query: 228 QFGGP 232
F P
Sbjct: 438 PFSNP 442
Score = 50 (22.7 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 159 PSYGYATYGPEYVYPQGIYNPYQQYVPI---YGVPGTVNTAVYPYGQLGQTIPGSHAYTP 215
PS + YG ++ PQG + P P +P + + YG+ GQ P + +P
Sbjct: 404 PSTYFPQYGGQFSGPQGNFGPNSAQSPAGFQQPMPFSNPPSAGGYGR-GQQAPNAQWSSP 462
Query: 216 VQG 218
QG
Sbjct: 463 -QG 464
Score = 48 (22.0 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 127 FSGSTQATRGPYIGSF--GYQQPLPYNYQQGMVYPSYGYATYGP--EYVYPQG 175
FSG Q GP G+QQP+P++ YG P ++ PQG
Sbjct: 415 FSGP-QGNFGPNSAQSPAGFQQPMPFSNPPSA--GGYGRGQQAPNAQWSSPQG 464
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 156 (60.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 42/162 (25%), Positives = 72/162 (44%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGY 144
+ + ++G NC + + + SG+ RG G FG
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG---GGFGG 212
Query: 145 QQPLPYNYQQGMVYPS---YGYATYGPEYVYPQGIYNPYQQY 183
N+ +G + +G + G Y G YN + Y
Sbjct: 213 ND----NFGRGGNFSGRGGFGGSRGGGGYGGSGGSYNDFGNY 250
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 156 (60.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+W+T + ++ YF +FG++++ + D TGRS+G+GFV F+E E+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 93 PTPFIDGRRANCNLASLGR---PRPQVLYGRLRPATLFSGSTQATRGPYIGSFG 143
++G+ + A + P ++ G L P T + R Y G FG
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT----PEEKIR-EYFGGFG 204
Score = 121 (47.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
K+FVGGL+ +T E +R YF FGE+ + D T + +G+ F+TF+E E ++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 156 (60.0 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 156 (60.0 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 156 (60.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 19 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 78
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 79 AARPHSIDGR 88
Score = 153 (58.9 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 51/168 (30%), Positives = 75/168 (44%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 104 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 163
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGY 144
+ I+G A A + +V R F G G+FG
Sbjct: 164 PVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGG---GNFG- 219
Query: 145 QQPLP-YNYQQGMV-YPSY-----GYATYG--PEYVYPQGIYNPYQQY 183
P P N++ G Y S GY YG P Y G YN + Y
Sbjct: 220 --PGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGNYGSGNYNDFGNY 265
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 152 (58.6 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89
+K+F+GG+A+ +++R F ++GE+++ VI D+ TGRS+G+GFVTF EAA A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Score = 36 (17.7 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 128 SGSTQATRGPYIGSFGYQQPLPYNYQQG 155
S ++ G Y GS GY Y G
Sbjct: 218 SSASAGAVGDYNGSSGYGSANTYGSSNG 245
Score = 36 (17.7 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 187 YGVPGTVNTAVYPYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGG 231
YG G YG G G+ Y G G G+ +GG
Sbjct: 137 YGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAGGYGG 181
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EKVDAAMNARPHKVDGR 82
Score = 139 (54.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 50/210 (23%), Positives = 87/210 (41%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHN 157
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGY 144
+ + ++G NC + + + SG+ RG G FG
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG---GGFGG 212
Query: 145 QQPLPYNYQQGMVYPS---YGYATYGPEYVYPQGIYNPYQQYVPIYGVPGTVNTAVYPYG 201
N+ +G + +G + G Y YN + +G G+ N +G
Sbjct: 213 ND----NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYND----FG 264
Query: 202 QLGQTIPGSHAYTPVQGYGMPGHQIMQFGG 231
S + P++G G + +GG
Sbjct: 265 NYNNQ---SSNFGPMKGGNFGGRSLGPYGG 291
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 155 (59.6 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 77/262 (29%), Positives = 113/262 (43%)
Query: 22 LNSP-----FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
LN+P +G ++FVGG+ ++T +R++F Q+G + E ++ D+ G SKGYG
Sbjct: 30 LNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYG 88
Query: 77 FVTFREPEAARRAC--ADPTPFIDGRRANCNLA----SLGRPRPQVLYGRLRPATLFSGS 130
FVTF E A++ A+ + D ++ N A +G PR ++ PA +G+
Sbjct: 89 FVTFETQEDAQKILQEAEKLNYKD-KKLNIGPAIRKQQVGIPRSSIM-----PA---AGT 139
Query: 131 TQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN-PYQQYVPIYGV 189
T S GY PY Y G+ Y T P + I + P P+Y
Sbjct: 140 MYLTT-----STGY----PYTYHNGVAYFHTPEVTSVPPPWPSRSISSSPVMVAQPVYQQ 190
Query: 190 PGTVNTA---VYPYGQLGQTIPGSHAYTPVQGYGMPGH------QIMQFGG---PNLNAI 237
P A P GQ +P S A + Y P +I Q GG P L+ +
Sbjct: 191 PAYHYQAPAQCLP-GQWQWNVPQSPASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLM 249
Query: 238 TTS-PLPT----VQAPYPTVHA 254
S P P VQA Y V+A
Sbjct: 250 EASVPEPYSDHGVQATYHQVYA 271
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 155 (59.6 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 23/56 (41%), Positives = 41/56 (73%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARR 88
K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ F++ + +
Sbjct: 83 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 138
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 156 (60.0 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 153 (58.9 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 49/147 (33%), Positives = 78/147 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC-A 91
K+FVGGL+++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF + A+ A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 92 DPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIG---SFGYQ-QP 147
+DGR+ + A G R YG R + SG +R Y S GY +
Sbjct: 67 MNGKSVDGRQIRVDQAG-GGDRG---YGGNRFESR-SGGYGGSRDYYSSRSQSGGYSDRS 121
Query: 148 LPYNYQQGMVYPSYGYA-TYGPEYVYP 173
+Y+ Y SYG + + G ++P
Sbjct: 122 SGGSYRDS--YDSYGKSHSEGATLLWP 146
>FB|FBgn0011206 [details] [associations]
symbol:bol "boule" species:7227 "Drosophila melanogaster"
[GO:0007140 "male meiosis" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP;TAS] [GO:0048137 "spermatocyte
division" evidence=IMP] [GO:0003729 "mRNA binding"
evidence=ISS;NAS;IMP] [GO:0008315 "meiotic G2/MI transition"
evidence=IMP;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IGI] [GO:0045836 "positive regulation of meiosis"
evidence=NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043204 "perikaryon" evidence=IDA] [GO:0007476 "imaginal
disc-derived wing morphogenesis" evidence=IMP] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:AE014296 GO:GO:0006417 GO:GO:0000166
GO:GO:0043204 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0046331
GO:GO:0007140 GO:GO:0007476 eggNOG:NOG260394
GeneTree:ENSGT00530000063480 EMBL:U51858 EMBL:AI063811
EMBL:AY089323 PIR:S68988 RefSeq:NP_523989.1 RefSeq:NP_729456.1
RefSeq:NP_729457.1 RefSeq:NP_729458.1 UniGene:Dm.20499
ProteinModelPortal:Q24207 SMR:Q24207 DIP:DIP-20744N IntAct:Q24207
MINT:MINT-911886 STRING:Q24207 PaxDb:Q24207 PRIDE:Q24207
EnsemblMetazoa:FBtr0076538 EnsemblMetazoa:FBtr0076540 GeneID:39049
KEGG:dme:Dmel_CG4760 UCSC:CG4760-RA CTD:39049 FlyBase:FBgn0011206
InParanoid:Q24207 OMA:NVPTIWP OrthoDB:EOG4S1RQF PhylomeDB:Q24207
ChiTaRS:bol GenomeRNAi:39049 NextBio:811653 Bgee:Q24207
GermOnline:CG4760 GO:GO:0008315 GO:GO:0048137 Uniprot:Q24207
Length = 228
Score = 150 (57.9 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 57/196 (29%), Positives = 85/196 (43%)
Query: 22 LNSP-FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 80
L +P +G ++FVGG++ +T + R F +G + +I D+ G SKGYGFVTF
Sbjct: 22 LAAPKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTF 80
Query: 81 REPEAARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIG 140
+ A+R AD + R N+A + +P L + AT +G+ T P
Sbjct: 81 ETEQEAQRLQADGECVVL-RDRKLNIAPAIKKQPNPLQSIV--AT--NGAVYYTTTPPAP 135
Query: 141 SFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGI--YNPYQQYVPIYGVPGTVNTAVY 198
+P + VYP G +YP Y P+ QY Y VP V T ++
Sbjct: 136 ISN----IPMDQFAAAVYPPAA----GVPAIYPPSAMQYQPFYQY---YSVPMNVPT-IW 183
Query: 199 PYGQLGQTIPGSHAYT 214
P P H+ T
Sbjct: 184 PQNYQENHSPLLHSPT 199
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 146 (56.5 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 28 DTT-YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAA 86
DT+ + +FVG L+ E E + + F FG + EA V+ D TGRS+GYGFV FRE A
Sbjct: 177 DTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADA 236
Query: 87 RRACADPT-PFIDGRRANCNLASL-GRP 112
+A ++ R CN A+ G+P
Sbjct: 237 EKALTSMDGEWLGSRAIRCNWANQKGQP 264
Score = 106 (42.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKG--YGFVTFREPEAARRACA 91
++VGGL + +++ FE G ++ +I DKN SKG YGFV F +P AA RA
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFN-SKGANYGFVEFDDPGAAERAMQ 150
Query: 92 DPTPFIDGRR 101
++GRR
Sbjct: 151 T----LNGRR 156
Score = 51 (23.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 199 PYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGP 232
P GQ PG A +P PG Q+GGP
Sbjct: 383 PTGQF-DNFPGQQANSPFAS--SPGPYFPQYGGP 413
Score = 50 (22.7 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 29/96 (30%), Positives = 37/96 (38%)
Query: 122 RPATLFSGSTQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGI----- 176
RP G + G + G Q P+ G +P YG GP + PQG
Sbjct: 371 RPLKCSWGKDRPPTGQFDNFPGQQANSPFASSPGPYFPQYG-GPGGP--MTPQGPAQAGR 427
Query: 177 -YNPYQQYVPIYG-VPGTVNTAVYPYGQLGQTIPGS 210
+ Q +G VPG NT YG+ GQ P S
Sbjct: 428 GWEQPQMAQQGFGQVPG--NTG---YGR-GQATPNS 457
>UNIPROTKB|K7EJM5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AL109811 HGNC:HGNC:11571
Ensembl:ENST00000473118 Uniprot:K7EJM5
Length = 201
Score = 144 (55.7 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93
+ V GL W+T + ++ YF FGE+L V D TG SKG+GFV F E E + +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ- 164
Query: 94 TPFIDGRRANCNLASLGRPRPQVLYGR 120
IDGR +C L + + + + L R
Sbjct: 165 RHMIDGRWCDCKLPNSKQSQDEPLRSR 191
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 138 (53.6 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 49 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 108
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 109 SVDKIVIQKYHTVNGH--NCEV 128
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 156 (60.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90
+ K+F+GGL++ET E++R Y+EQ+G++ + VV+ D + RS+G+GFVTF A
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 91 ADPTPFIDGR 100
A IDGR
Sbjct: 80 AARPHSIDGR 89
Score = 147 (56.8 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 59/224 (26%), Positives = 90/224 (40%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G++ +ITD+ +G+ +G+GF TF + +
Sbjct: 105 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHD 164
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGY 144
+ I+G A A + +V R F G G+FG
Sbjct: 165 PVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSHGGG---GNFG- 220
Query: 145 QQPLP-YNYQQGMVYPSYGYAT---YGPEYV-YPQGIYNPYQQYVPIYGVP-GTVNTAVY 198
P P N++ G SYGY + +G Y Y G+ +P YG G
Sbjct: 221 --PGPGSNFRGG----SYGYGSGRGFGDGYNGYGGGLGGGNFGGIPGYGGGRGGYGGGGP 274
Query: 199 PYGQLGQTIPGSHAYTPVQGYGMPGHQIMQFGGPNLNAITTSPL 242
YG G G + YG + FG N P+
Sbjct: 275 GYGNQGGGYGGGYDNYGGGNYGSGNYN--DFGNYNQQPSNYGPM 316
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 156 (60.0 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 140 (54.3 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 57/216 (26%), Positives = 85/216 (39%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQVLYGRLRPATLFSGSTQATRGPYIGSFGY 144
+ + ++G NC + + + SG+ RG G FG
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG---GGFGG 212
Query: 145 QQPLPY--NYQ-QGMVYPSYGYATYGPEYVYPQGIYNP--YQQYVPIY-GVPGTVNTAVY 198
N+ +G S G YG G N Y P Y G +
Sbjct: 213 NDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQ 272
Query: 199 PYGQLGQTIPGSHAYTPVQ---GYGMPGHQIMQFGG 231
YG G GS +Y G G G FGG
Sbjct: 273 GYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGG 308
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 156 (60.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 156 (60.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 66 EEVDAAMNARPHKVDGR 82
Score = 138 (53.6 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 158 SVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 156 (60.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83
SP K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+
Sbjct: 27 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 86
Query: 84 EAARRACADPTPFIDGR 100
E A +DGR
Sbjct: 87 EEVDAAMNARPHKVDGR 103
Score = 138 (53.6 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ FVTF + +
Sbjct: 119 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 178
Query: 85 AARRACADPTPFIDGRRANCNL 106
+ + ++G NC +
Sbjct: 179 SVDKIVIQKYHTVNGH--NCEV 198
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 144 (55.7 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPE 84
P T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + +
Sbjct: 53 PGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 112
Query: 85 AARRACADPTPFIDGRRANCNLASLGRPRPQ 115
+ I+G A A L R Q
Sbjct: 113 PVDKIVLQKYHTINGHNAEVRKA-LSRQEMQ 142
Score = 44 (20.5 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 27/86 (31%), Positives = 31/86 (36%)
Query: 140 GSFGYQQPLPYNYQQGMV---YPSYGYATYGPEYVYPQGIYNPY-QQYVPIY-GVPGTVN 194
G +G P Y Q G Y +YG YG G YN Y P+ G G
Sbjct: 215 GGYGGGGP-GYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSR 273
Query: 195 TAVYPYGQLGQTIPGSHAYTPVQGYG 220
PYG G PG + GYG
Sbjct: 274 NMGGPYGG-GNYGPGGSGGSG--GYG 296
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 137 (53.3 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 32 TK-VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
TK ++VG L W+ +SE ++ +FGE++ A VI +K+TGRS+GYGF+ R+ +A +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEK 58
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 137 (53.3 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 32 TK-VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
TK ++VG L W+ +SE ++ +FGE++ A VI +K+TGRS+GYGF+ R+ +A +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEK 58
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 137 (53.3 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE 82
+K+F+GGL+W ++++ F FGE+ E + DK +GRS+G+GFV F E
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 155 (59.6 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 38/112 (33%), Positives = 60/112 (53%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF + + +
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQ 172
Query: 93 PTPFIDGRRANCNLASLGRPRPQVLYG-RLRPATLFSGSTQATRGPYIGSFG 143
I+G RA A L R + + G R R F S + G G+FG
Sbjct: 173 KYHAINGHRAEVGKA-LSRQEMKEIQGPRSRKGGPFGFSVSSNGG---GNFG 220
Score = 140 (54.3 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL+ ET E+++ Y++Q+GE+ + VVI + +S+G+GFVTF A A
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAA 81
Query: 93 PTPFIDGR 100
IDGR
Sbjct: 82 RPHSIDGR 89
Score = 49 (22.3 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 35/124 (28%), Positives = 48/124 (38%)
Query: 118 YGRLRPATLFSGSTQAT-RGPYI--GSFGYQQ-PLPYNYQQGMVYPSYGYATYGPEYVYP 173
+GR P T F G GP G GY P N+ G YP YG +G Y
Sbjct: 219 FGR-GPGTKFRGEADGYGNGPESRDGCHGYGGGPGGGNFG-G--YPCYGGGNFGGYPCYG 274
Query: 174 QGIYNPYQQYVPIYGVPGTVNTAVYP--YGQLGQTIPGSHAYTPVQG--YGMPGHQIMQF 229
G Y P YG + Y +G Q P + Y P++ +G+ + + +
Sbjct: 275 GG-GGEYAGRRPGYGNQWEFSGGGYGNNFGNYDQQ-PSN--YGPMRNGIFGVGRNIVAPY 330
Query: 230 GGPN 233
GG N
Sbjct: 331 GGGN 334
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 150 (57.9 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 29/60 (48%), Positives = 44/60 (73%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF---REPEAARRA 89
K+F+GGL++ET E++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E +AA A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Score = 127 (49.8 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 30 TYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAAR 87
T K+FVGG+ +T+ +R YF Q+G E++E ++TD+ +G+ +G+ FVTF + ++
Sbjct: 96 TVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIE--IVTDRGSGKKRGFAFVTFDDRDSVD 153
Query: 88 RACADPTPFIDGRRANCNL 106
+ ++G NC +
Sbjct: 154 KIVIQKYHTVNGH--NCEV 170
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 153 (58.9 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 33/82 (40%), Positives = 53/82 (64%)
Query: 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF--- 80
SP K+F+GGL++ET +E++R +FEQ+G + + VV+ D NT S+G+GFVT+
Sbjct: 6 SPIEPEQLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATV 65
Query: 81 REPEAARRACADPTPFIDGRRA 102
+E +AAR D ++ +RA
Sbjct: 66 KEVDAARSHKVDGR-VVEPKRA 86
Score = 120 (47.3 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 80
P T K+FVGG+ +T+ +R YF+Q+G+I ++TD+ +G+ +G+ VTF
Sbjct: 95 PGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTF 150
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 153 (58.9 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 76/262 (29%), Positives = 113/262 (43%)
Query: 22 LNSP-----FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 76
LN+P +G ++FVGG+ ++T +R++F Q+G + E ++ D+ G SKGYG
Sbjct: 30 LNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYG 88
Query: 77 FVTFREPEAARRAC--ADPTPFIDGRRANCNLA----SLGRPRPQVLYGRLRPATLFSGS 130
F+TF E A++ A+ + D ++ N A +G PR ++ PA +G+
Sbjct: 89 FITFETQEDAQKILQEAEKLNYKD-KKLNIGPAIRKQQVGIPRSSIM-----PA---AGT 139
Query: 131 TQATRGPYIGSFGYQQPLPYNYQQGMVYPSYGYATYGPEYVYPQGIYN-PYQQYVPIYGV 189
T S GY PY Y G+ Y T P + I + P P+Y
Sbjct: 140 MYLTT-----STGY----PYTYHNGVAYFHTPEVTSVPPSWPSRSISSSPVMVAQPVYQQ 190
Query: 190 PGTVNTA---VYPYGQLGQTIPGSHAYTPVQGYGMPGH------QIMQFGG---PNLNAI 237
P A P GQ +P S A + Y P +I Q GG P L+ +
Sbjct: 191 PAYHYQAPAQCIP-GQWQWGVPQSPASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLM 249
Query: 238 TTS-PLPT----VQAPYPTVHA 254
S P P VQA Y V+A
Sbjct: 250 EASVPEPYSDHGVQAAYHQVYA 271
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 156 (60.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ + A D
Sbjct: 34 KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVN-ASMD 92
Query: 93 PTPF-IDGR 100
P +DGR
Sbjct: 93 ARPHKVDGR 101
Score = 151 (58.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE 82
+ PF TT K+FVGG+ +T+ +R YF+QFG+I ++ D TG +G+ FVTF +
Sbjct: 115 SKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDD 174
Query: 83 PEAARRACADPTPFIDGRRANCNL 106
++ R ++G NC +
Sbjct: 175 HDSVDRIVIQKYHTVNGH--NCEV 196
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 156 (60.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 64/220 (29%), Positives = 90/220 (40%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGG+ + + +F QFGE+ E ++ D +TGRS+G+GFVT+ + A
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 93 PTPF-IDGRRANCNLASLGRPR----PQVLYGRLRPATLFSGSTQATRGPYIGSFGYQQP 147
+ G + A +P P +G R + F G G G GY P
Sbjct: 191 GNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSR--SNFGGGYGDGYGGGHGG-GYGGP 247
Query: 148 LPYNYQQGMVYP---SYGYATYGPEYV-YPQGIYN----PYQQYVPIYGVPGTVNTAVYP 199
Y+ G Y S GY YG E+ Y G Y PY+ P G G
Sbjct: 248 -GGPYKSGGGYGGGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGE-PALGYSGRYGGGGGG 305
Query: 200 YGQLGQTIPGSHAYTPVQG------YGMPGHQIMQFGGPN 233
Y + G ++ G Y G YG PG +GGP+
Sbjct: 306 YNRGGYSMGGGGGYGGGPGDMYGGSYGEPGGG---YGGPS 342
Score = 138 (53.6 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92
K+FVGGLA ET S ++F ++GEI ++V++ D+ TG+ +G+GFVT+ + + D
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
WARNING: HSPs involving 546 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.139 0.441 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 258 246 0.0010 113 3 11 22 0.45 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 796
No. of states in DFA: 600 (64 KB)
Total size of DFA: 194 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.30u 0.10s 22.40t Elapsed: 00:00:02
Total cpu time: 22.34u 0.10s 22.44t Elapsed: 00:00:02
Start: Thu May 9 14:01:05 2013 End: Thu May 9 14:01:07 2013
WARNINGS ISSUED: 2