Query 025068
Match_columns 258
No_of_seqs 342 out of 1903
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 9.5E-24 2.1E-28 178.3 15.9 93 22-114 3-96 (247)
2 PLN03134 glycine-rich RNA-bind 99.8 2.6E-19 5.7E-24 144.8 15.5 83 28-110 31-114 (144)
3 TIGR01659 sex-lethal sex-letha 99.7 1.6E-17 3.4E-22 152.1 12.8 84 26-109 102-186 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.9E-17 1.1E-21 148.6 13.4 85 28-112 266-351 (352)
5 TIGR01628 PABP-1234 polyadenyl 99.7 1.8E-16 4E-21 153.9 15.7 87 28-115 282-369 (562)
6 TIGR01659 sex-lethal sex-letha 99.7 2.2E-16 4.7E-21 144.7 14.9 83 29-111 191-276 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.2E-16 2.6E-21 146.1 10.7 81 30-110 2-83 (352)
8 KOG0125 Ataxin 2-binding prote 99.6 4.3E-16 9.3E-21 137.3 8.6 82 27-110 92-174 (376)
9 KOG0122 Translation initiation 99.6 2.1E-15 4.5E-20 128.4 10.8 83 28-110 186-269 (270)
10 KOG0148 Apoptosis-promoting RN 99.6 5.3E-15 1.2E-19 127.6 12.7 77 29-111 162-239 (321)
11 PF00076 RRM_1: RNA recognitio 99.6 1.6E-15 3.5E-20 106.1 7.8 69 34-103 1-70 (70)
12 KOG0148 Apoptosis-promoting RN 99.6 2.3E-15 5E-20 129.8 7.3 82 31-112 62-144 (321)
13 TIGR01648 hnRNP-R-Q heterogene 99.6 5.3E-14 1.1E-18 135.9 17.0 74 30-111 232-308 (578)
14 KOG4207 Predicted splicing fac 99.6 4.9E-15 1.1E-19 123.4 8.2 88 25-112 7-95 (256)
15 PLN03120 nucleic acid binding 99.6 1E-14 2.2E-19 127.0 10.4 76 31-109 4-79 (260)
16 TIGR01645 half-pint poly-U bin 99.6 8.2E-15 1.8E-19 141.8 10.7 82 29-110 202-284 (612)
17 PF14259 RRM_6: RNA recognitio 99.6 6.6E-15 1.4E-19 103.8 7.0 69 34-103 1-70 (70)
18 KOG0117 Heterogeneous nuclear 99.6 8.3E-14 1.8E-18 127.3 15.3 78 29-114 257-335 (506)
19 KOG0144 RNA-binding protein CU 99.6 8.3E-15 1.8E-19 133.2 8.6 88 26-113 29-120 (510)
20 TIGR01645 half-pint poly-U bin 99.6 1.1E-14 2.4E-19 140.9 9.8 80 29-108 105-185 (612)
21 KOG0113 U1 small nuclear ribon 99.6 1.4E-14 3.1E-19 126.3 8.9 80 29-108 99-179 (335)
22 TIGR01628 PABP-1234 polyadenyl 99.5 2E-14 4.3E-19 139.7 10.3 77 33-109 2-79 (562)
23 KOG0107 Alternative splicing f 99.5 2.1E-14 4.5E-19 116.9 7.7 75 30-109 9-84 (195)
24 TIGR01622 SF-CC1 splicing fact 99.5 3.8E-14 8.2E-19 134.2 10.6 83 28-110 86-168 (457)
25 TIGR01648 hnRNP-R-Q heterogene 99.5 3.7E-14 8.1E-19 136.9 9.6 77 30-107 57-135 (578)
26 KOG0111 Cyclophilin-type pepti 99.5 1.1E-14 2.3E-19 122.5 5.1 85 29-113 8-93 (298)
27 KOG0117 Heterogeneous nuclear 99.5 3.5E-14 7.5E-19 129.7 8.6 80 29-108 81-162 (506)
28 KOG0144 RNA-binding protein CU 99.5 1E-14 2.2E-19 132.7 4.8 87 30-117 123-213 (510)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.4E-13 3E-18 132.0 12.3 83 29-111 293-376 (509)
30 TIGR01622 SF-CC1 splicing fact 99.5 1.6E-13 3.5E-18 129.9 11.2 78 31-108 186-264 (457)
31 PLN03121 nucleic acid binding 99.5 2E-13 4.3E-18 117.4 10.4 76 30-108 4-79 (243)
32 KOG0145 RNA-binding protein EL 99.5 2.5E-13 5.5E-18 116.8 10.8 83 28-110 38-121 (360)
33 KOG0121 Nuclear cap-binding pr 99.5 8.3E-14 1.8E-18 108.0 6.8 80 29-108 34-114 (153)
34 smart00362 RRM_2 RNA recogniti 99.5 2.7E-13 5.9E-18 93.7 8.3 71 33-105 1-72 (72)
35 PLN03213 repressor of silencin 99.5 2E-13 4.3E-18 126.2 9.3 78 28-109 7-87 (759)
36 smart00360 RRM RNA recognition 99.5 3.3E-13 7.2E-18 92.9 8.1 70 36-105 1-71 (71)
37 KOG4205 RNA-binding protein mu 99.5 1.1E-13 2.3E-18 124.3 6.9 104 30-134 5-108 (311)
38 KOG0126 Predicted RNA-binding 99.5 2.2E-14 4.7E-19 117.4 2.2 83 29-111 33-116 (219)
39 COG0724 RNA-binding proteins ( 99.4 3.5E-13 7.6E-18 115.8 9.5 78 31-108 115-193 (306)
40 KOG0108 mRNA cleavage and poly 99.4 2.5E-13 5.3E-18 126.9 7.7 81 32-112 19-100 (435)
41 KOG0130 RNA-binding protein RB 99.4 6.5E-13 1.4E-17 104.0 8.1 90 24-113 65-155 (170)
42 KOG0109 RNA-binding protein LA 99.4 3.4E-13 7.3E-18 117.5 6.4 71 32-110 3-74 (346)
43 KOG0146 RNA-binding protein ET 99.4 2.5E-13 5.5E-18 117.2 5.5 87 25-111 279-366 (371)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.8E-12 4E-17 123.9 11.1 78 28-110 272-351 (481)
45 cd00590 RRM RRM (RNA recogniti 99.4 3.5E-12 7.5E-17 88.6 9.1 73 33-106 1-74 (74)
46 KOG0131 Splicing factor 3b, su 99.4 9E-13 1.9E-17 108.0 6.6 81 28-108 6-87 (203)
47 KOG4205 RNA-binding protein mu 99.4 1.7E-11 3.8E-16 110.1 15.1 86 30-115 96-181 (311)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.8E-12 6E-17 122.7 10.4 75 31-111 2-79 (481)
49 KOG0114 Predicted RNA-binding 99.4 5.6E-12 1.2E-16 94.5 9.1 88 20-110 7-95 (124)
50 KOG0105 Alternative splicing f 99.3 7.2E-12 1.6E-16 103.1 10.0 80 29-111 4-84 (241)
51 KOG0145 RNA-binding protein EL 99.3 5.8E-12 1.3E-16 108.5 9.7 92 19-110 266-358 (360)
52 KOG0127 Nucleolar protein fibr 99.3 5E-12 1.1E-16 118.2 9.7 87 25-111 286-379 (678)
53 smart00361 RRM_1 RNA recogniti 99.3 1.3E-11 2.9E-16 87.4 6.9 61 45-105 2-70 (70)
54 KOG0131 Splicing factor 3b, su 99.3 6.8E-12 1.5E-16 102.9 5.7 84 31-114 96-181 (203)
55 KOG0123 Polyadenylate-binding 99.3 1.4E-11 3E-16 113.8 8.2 80 33-115 78-158 (369)
56 KOG0415 Predicted peptidyl pro 99.3 1E-11 2.2E-16 110.9 6.6 81 28-108 236-317 (479)
57 KOG0127 Nucleolar protein fibr 99.2 1.9E-11 4.2E-16 114.3 8.2 81 31-112 117-198 (678)
58 KOG0146 RNA-binding protein ET 99.2 1.2E-11 2.6E-16 106.9 4.9 85 30-115 18-106 (371)
59 KOG0116 RasGAP SH3 binding pro 99.2 1.4E-10 3.1E-15 107.9 11.3 80 30-109 287-366 (419)
60 KOG0147 Transcriptional coacti 99.2 2.2E-11 4.8E-16 114.0 5.4 78 33-110 280-358 (549)
61 KOG4661 Hsp27-ERE-TATA-binding 99.2 1.4E-10 3E-15 109.1 10.1 80 30-109 404-484 (940)
62 KOG0153 Predicted RNA-binding 99.2 9.2E-11 2E-15 104.6 8.4 81 23-109 220-302 (377)
63 PF13893 RRM_5: RNA recognitio 99.2 8E-11 1.7E-15 79.5 6.2 55 48-107 1-56 (56)
64 KOG0124 Polypyrimidine tract-b 99.2 2.2E-11 4.8E-16 109.2 3.9 77 31-107 113-190 (544)
65 KOG4212 RNA-binding protein hn 99.2 1.2E-10 2.5E-15 106.7 8.5 79 29-108 42-122 (608)
66 KOG0109 RNA-binding protein LA 99.1 1E-10 2.2E-15 102.2 5.6 76 28-111 75-151 (346)
67 TIGR01642 U2AF_lg U2 snRNP aux 99.1 3.8E-10 8.3E-15 108.2 9.9 78 25-108 169-258 (509)
68 KOG4208 Nucleolar RNA-binding 99.1 4.1E-10 8.9E-15 94.2 8.0 87 24-110 42-130 (214)
69 KOG4206 Spliceosomal protein s 99.0 9.2E-10 2E-14 93.3 8.3 81 29-112 7-92 (221)
70 KOG0132 RNA polymerase II C-te 99.0 5.2E-10 1.1E-14 108.4 7.3 78 31-114 421-499 (894)
71 KOG0124 Polypyrimidine tract-b 99.0 5.8E-10 1.2E-14 100.2 5.7 82 28-109 207-289 (544)
72 KOG0226 RNA-binding proteins [ 99.0 4.5E-10 9.7E-15 96.6 4.4 85 25-109 184-269 (290)
73 KOG0123 Polyadenylate-binding 99.0 7.3E-10 1.6E-14 102.5 5.3 88 27-115 266-354 (369)
74 KOG4212 RNA-binding protein hn 98.9 3.2E-09 7E-14 97.4 7.8 81 22-107 527-608 (608)
75 KOG0110 RNA-binding protein (R 98.9 5.8E-09 1.3E-13 100.5 8.2 81 28-108 512-596 (725)
76 KOG0110 RNA-binding protein (R 98.8 2E-09 4.4E-14 103.6 4.3 84 28-111 610-694 (725)
77 KOG0533 RRM motif-containing p 98.8 1E-08 2.2E-13 89.1 8.2 84 27-111 79-163 (243)
78 KOG4209 Splicing factor RNPS1, 98.8 2E-08 4.4E-13 87.1 8.1 85 26-110 96-180 (231)
79 KOG1457 RNA binding protein (c 98.7 2.9E-07 6.3E-12 78.2 11.4 86 28-113 31-121 (284)
80 KOG4211 Splicing factor hnRNP- 98.6 1.6E-07 3.5E-12 87.5 9.7 82 27-111 6-87 (510)
81 KOG1548 Transcription elongati 98.6 1.2E-07 2.6E-12 84.9 8.2 80 28-108 131-219 (382)
82 KOG4849 mRNA cleavage factor I 98.6 1.8E-06 3.9E-11 77.6 14.5 74 31-104 80-156 (498)
83 KOG4454 RNA binding protein (R 98.6 2.3E-08 4.9E-13 84.5 1.8 77 30-108 8-85 (267)
84 KOG1995 Conserved Zn-finger pr 98.5 3.6E-07 7.9E-12 82.3 7.5 89 23-111 58-155 (351)
85 KOG4660 Protein Mei2, essentia 98.5 8.7E-08 1.9E-12 90.4 3.6 71 28-103 72-143 (549)
86 KOG0106 Alternative splicing f 98.5 1.7E-07 3.7E-12 80.0 4.2 70 32-109 2-72 (216)
87 KOG0147 Transcriptional coacti 98.3 2E-07 4.3E-12 87.8 1.3 87 27-113 175-261 (549)
88 PF04059 RRM_2: RNA recognitio 98.3 6.3E-06 1.4E-10 62.0 8.6 77 32-108 2-85 (97)
89 KOG0120 Splicing factor U2AF, 98.3 1.3E-06 2.9E-11 82.8 5.6 85 28-112 286-371 (500)
90 KOG0151 Predicted splicing reg 98.2 3.6E-06 7.8E-11 81.6 7.5 82 27-108 170-255 (877)
91 KOG4211 Splicing factor hnRNP- 98.2 3.7E-06 8E-11 78.6 7.3 80 29-109 101-181 (510)
92 KOG4210 Nuclear localization s 98.1 5.4E-06 1.2E-10 74.3 5.2 78 31-108 184-262 (285)
93 KOG1190 Polypyrimidine tract-b 98.0 5E-05 1.1E-09 69.7 10.2 76 31-111 297-374 (492)
94 KOG0106 Alternative splicing f 97.9 1.4E-05 3.1E-10 68.3 4.5 78 24-109 92-170 (216)
95 PF08777 RRM_3: RNA binding mo 97.9 1.8E-05 3.8E-10 60.6 4.6 69 32-106 2-76 (105)
96 PF11608 Limkain-b1: Limkain b 97.8 7.3E-05 1.6E-09 54.4 6.3 67 32-108 3-75 (90)
97 KOG1457 RNA binding protein (c 97.8 2.1E-05 4.6E-10 67.0 3.6 63 28-94 207-269 (284)
98 KOG4307 RNA binding protein RB 97.8 0.00012 2.5E-09 71.3 8.7 79 28-106 864-943 (944)
99 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00014 3E-09 48.6 5.8 52 32-90 2-53 (53)
100 KOG0129 Predicted RNA-binding 97.7 0.00015 3.3E-09 68.4 7.9 65 28-93 256-326 (520)
101 KOG1190 Polypyrimidine tract-b 97.7 7E-05 1.5E-09 68.8 5.4 75 28-108 25-102 (492)
102 KOG0129 Predicted RNA-binding 97.6 0.0002 4.3E-09 67.6 7.7 64 29-92 368-432 (520)
103 COG5175 MOT2 Transcriptional r 97.6 0.00013 2.8E-09 65.6 6.1 80 31-110 114-203 (480)
104 KOG1855 Predicted RNA-binding 97.5 0.00012 2.6E-09 67.6 5.3 72 25-96 225-309 (484)
105 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00064 1.4E-08 51.5 7.4 78 29-107 4-89 (100)
106 KOG4206 Spliceosomal protein s 97.3 0.00087 1.9E-08 57.2 7.6 74 29-107 144-219 (221)
107 KOG1456 Heterogeneous nuclear 97.3 0.002 4.3E-08 58.9 10.2 82 22-108 278-361 (494)
108 KOG2314 Translation initiation 97.1 0.0012 2.7E-08 63.0 7.2 78 29-107 56-141 (698)
109 PF10309 DUF2414: Protein of u 97.1 0.003 6.6E-08 43.5 6.9 58 28-93 2-62 (62)
110 KOG1365 RNA-binding protein Fu 97.1 0.0013 2.9E-08 60.1 6.3 79 31-110 280-362 (508)
111 KOG0128 RNA-binding protein SA 97.0 0.00043 9.2E-09 68.8 2.9 78 31-109 736-814 (881)
112 KOG1456 Heterogeneous nuclear 96.9 0.005 1.1E-07 56.3 8.7 86 20-111 20-108 (494)
113 KOG1365 RNA-binding protein Fu 96.8 0.0013 2.9E-08 60.1 4.2 75 30-105 160-238 (508)
114 KOG0128 RNA-binding protein SA 96.7 0.00018 3.9E-09 71.3 -2.3 71 30-100 666-736 (881)
115 KOG3152 TBP-binding protein, a 96.7 0.00099 2.1E-08 57.9 2.3 72 30-101 73-157 (278)
116 KOG0112 Large RNA-binding prot 96.6 0.00043 9.4E-09 69.1 -0.5 80 27-107 368-448 (975)
117 KOG0105 Alternative splicing f 96.6 0.043 9.4E-07 45.9 11.1 78 23-107 107-187 (241)
118 PF08952 DUF1866: Domain of un 96.5 0.0082 1.8E-07 48.3 6.1 56 47-110 52-107 (146)
119 KOG0120 Splicing factor U2AF, 96.4 0.0079 1.7E-07 57.5 6.9 61 48-108 426-490 (500)
120 KOG2193 IGF-II mRNA-binding pr 96.4 0.0018 3.9E-08 60.0 2.2 77 32-114 2-80 (584)
121 KOG1548 Transcription elongati 96.4 0.0092 2E-07 54.1 6.7 78 27-108 261-350 (382)
122 KOG2202 U2 snRNP splicing fact 96.3 0.0013 2.9E-08 57.2 0.9 56 54-110 92-148 (260)
123 KOG4307 RNA binding protein RB 96.3 0.005 1.1E-07 60.3 4.9 85 22-107 425-511 (944)
124 PF08675 RNA_bind: RNA binding 96.3 0.015 3.2E-07 42.4 5.9 54 31-93 9-62 (87)
125 KOG4676 Splicing factor, argin 96.2 0.0069 1.5E-07 55.7 4.7 77 31-107 7-86 (479)
126 KOG2416 Acinus (induces apopto 95.8 0.0068 1.5E-07 58.4 3.1 81 23-109 436-521 (718)
127 KOG0115 RNA-binding protein p5 95.7 0.0086 1.9E-07 52.2 3.1 62 32-94 32-93 (275)
128 KOG1996 mRNA splicing factor [ 95.7 0.031 6.6E-07 49.8 6.3 63 45-107 300-364 (378)
129 PF15023 DUF4523: Protein of u 95.5 0.06 1.3E-06 43.2 6.7 75 27-108 82-160 (166)
130 KOG2591 c-Mpl binding protein, 94.9 0.034 7.3E-07 53.4 4.5 73 28-107 172-249 (684)
131 KOG4210 Nuclear localization s 94.6 0.025 5.5E-07 50.7 2.8 83 29-111 86-169 (285)
132 KOG2135 Proteins containing th 94.6 0.021 4.5E-07 53.8 2.2 74 30-109 371-445 (526)
133 KOG0112 Large RNA-binding prot 94.6 0.044 9.5E-07 55.3 4.5 78 28-111 452-532 (975)
134 KOG4285 Mitotic phosphoprotein 94.1 0.22 4.8E-06 44.6 7.4 74 31-111 197-271 (350)
135 KOG2068 MOT2 transcription fac 93.6 0.024 5.2E-07 51.2 0.5 81 30-110 76-163 (327)
136 PF03880 DbpA: DbpA RNA bindin 93.5 0.24 5.1E-06 35.1 5.4 66 33-107 2-74 (74)
137 PF04847 Calcipressin: Calcipr 93.1 0.31 6.6E-06 41.0 6.3 60 44-109 8-70 (184)
138 KOG2253 U1 snRNP complex, subu 92.9 0.11 2.3E-06 51.0 3.8 70 28-106 37-107 (668)
139 PF07576 BRAP2: BRCA1-associat 91.9 1.8 3.9E-05 33.3 8.7 62 31-94 13-75 (110)
140 KOG4660 Protein Mei2, essentia 89.1 0.57 1.2E-05 45.2 4.6 80 29-108 359-471 (549)
141 PF03467 Smg4_UPF3: Smg-4/UPF3 89.1 0.3 6.6E-06 40.7 2.5 81 29-109 5-97 (176)
142 KOG4483 Uncharacterized conser 87.6 1.6 3.5E-05 40.7 6.3 68 27-101 387-455 (528)
143 KOG4574 RNA-binding protein (c 86.3 0.45 9.7E-06 48.1 2.1 70 33-108 300-372 (1007)
144 KOG4410 5-formyltetrahydrofola 83.2 6.5 0.00014 35.2 7.7 49 30-84 329-378 (396)
145 PF11767 SET_assoc: Histone ly 82.1 5.6 0.00012 27.7 5.6 53 42-103 11-64 (66)
146 smart00596 PRE_C2HC PRE_C2HC d 78.1 4.7 0.0001 28.3 4.2 60 46-108 2-63 (69)
147 PF07530 PRE_C2HC: Associated 76.6 6.3 0.00014 27.5 4.5 60 46-108 2-63 (68)
148 KOG2318 Uncharacterized conser 73.0 16 0.00035 35.8 7.7 79 28-106 171-304 (650)
149 KOG0804 Cytoplasmic Zn-finger 70.7 17 0.00037 34.6 7.1 62 31-94 74-136 (493)
150 PF03468 XS: XS domain; Inter 67.9 5.9 0.00013 30.7 3.0 47 43-92 29-76 (116)
151 KOG4454 RNA binding protein (R 66.4 0.99 2.2E-05 38.9 -1.7 64 27-91 76-143 (267)
152 PF10567 Nab6_mRNP_bdg: RNA-re 63.3 12 0.00027 33.6 4.4 80 29-108 13-106 (309)
153 KOG2891 Surface glycoprotein [ 58.5 9.4 0.0002 34.1 2.9 35 29-63 147-193 (445)
154 COG0724 RNA-binding proteins ( 58.3 15 0.00032 30.7 4.1 62 26-87 220-281 (306)
155 KOG4676 Splicing factor, argin 57.3 0.99 2.1E-05 41.9 -3.5 66 29-98 149-214 (479)
156 PF15513 DUF4651: Domain of un 51.2 37 0.0008 23.3 4.2 18 46-63 9-26 (62)
157 KOG4019 Calcineurin-mediated s 51.2 14 0.0003 31.0 2.6 74 31-110 10-90 (193)
158 PF11411 DNA_ligase_IV: DNA li 49.5 13 0.00028 22.6 1.6 17 41-57 19-35 (36)
159 KOG4365 Uncharacterized conser 49.5 3 6.6E-05 39.4 -1.7 76 32-108 4-80 (572)
160 PRK14548 50S ribosomal protein 48.9 69 0.0015 23.3 5.7 56 35-93 24-81 (84)
161 PF07292 NID: Nmi/IFP 35 domai 48.2 21 0.00046 26.3 2.9 32 76-107 1-34 (88)
162 PRK11634 ATP-dependent RNA hel 46.2 2.1E+02 0.0046 28.6 10.6 69 32-109 487-562 (629)
163 PF00403 HMA: Heavy-metal-asso 45.8 83 0.0018 20.5 5.8 55 33-93 1-59 (62)
164 TIGR03636 L23_arch archaeal ri 43.4 1E+02 0.0023 22.0 5.8 56 34-92 16-73 (77)
165 PF07292 NID: Nmi/IFP 35 domai 42.8 14 0.0003 27.2 1.2 24 29-52 50-73 (88)
166 KOG3424 40S ribosomal protein 42.5 97 0.0021 24.2 5.8 46 42-88 34-84 (132)
167 PF02714 DUF221: Domain of unk 41.7 26 0.00056 31.5 3.1 32 76-108 1-32 (325)
168 COG5193 LHP1 La protein, small 37.3 14 0.0003 34.6 0.6 61 31-91 174-244 (438)
169 PRK11901 hypothetical protein; 37.2 62 0.0014 29.6 4.7 55 41-97 252-308 (327)
170 KOG2193 IGF-II mRNA-binding pr 36.7 2.8 6.1E-05 39.5 -4.0 76 29-108 78-155 (584)
171 PRK11558 putative ssRNA endonu 36.0 67 0.0014 24.1 4.0 50 30-82 26-75 (97)
172 PF09707 Cas_Cas2CT1978: CRISP 35.9 85 0.0018 23.0 4.5 49 30-81 24-72 (86)
173 PF13046 DUF3906: Protein of u 35.6 45 0.00097 23.0 2.7 34 43-78 30-63 (64)
174 PRK01178 rps24e 30S ribosomal 35.5 92 0.002 23.4 4.7 46 42-88 30-80 (99)
175 PF08206 OB_RNB: Ribonuclease 33.2 4.6 9.9E-05 27.1 -2.4 37 72-108 7-44 (58)
176 KOG4213 RNA-binding protein La 33.2 55 0.0012 27.5 3.4 57 31-93 111-170 (205)
177 KOG2295 C2H2 Zn-finger protein 32.6 4.8 0.00011 39.1 -3.2 63 29-91 229-294 (648)
178 PF04026 SpoVG: SpoVG; InterP 32.0 91 0.002 22.7 4.1 26 57-82 2-27 (84)
179 COG5353 Uncharacterized protei 28.8 2.9E+02 0.0062 22.5 6.7 54 32-85 88-154 (161)
180 KOG3432 Vacuolar H+-ATPase V1 28.0 88 0.0019 24.1 3.5 31 31-63 35-65 (121)
181 PF10281 Ish1: Putative stress 27.2 57 0.0012 19.7 2.0 18 42-59 3-20 (38)
182 KOG0226 RNA-binding proteins [ 27.2 24 0.00052 31.2 0.4 79 29-108 94-176 (290)
183 PF15407 Spo7_2_N: Sporulation 26.4 9.1 0.0002 26.7 -1.9 33 23-55 19-51 (67)
184 COG5638 Uncharacterized conser 26.0 91 0.002 29.6 3.9 41 25-65 140-185 (622)
185 KOG0156 Cytochrome P450 CYP2 s 25.7 1.2E+02 0.0025 29.5 4.8 59 35-102 36-97 (489)
186 PHA01632 hypothetical protein 25.5 70 0.0015 21.5 2.3 18 37-54 22-39 (64)
187 TIGR01873 cas_CT1978 CRISPR-as 25.4 62 0.0013 23.8 2.2 50 30-82 24-74 (87)
188 PRK13259 regulatory protein Sp 25.4 1.2E+02 0.0027 22.6 3.8 26 57-82 2-27 (94)
189 PF03439 Spt5-NGN: Early trans 24.8 1.3E+02 0.0028 21.5 3.9 25 71-95 42-66 (84)
190 PTZ00071 40S ribosomal protein 24.2 1.6E+02 0.0034 23.4 4.5 45 42-87 35-85 (132)
191 PF14111 DUF4283: Domain of un 23.0 59 0.0013 25.4 1.9 72 32-108 16-90 (153)
192 PF14401 RLAN: RimK-like ATPgr 22.5 1.9E+02 0.0041 23.4 4.8 61 29-89 85-146 (153)
193 PRK10629 EnvZ/OmpR regulon mod 21.9 3.9E+02 0.0085 20.9 6.8 67 33-107 37-108 (127)
194 PRK06737 acetolactate synthase 21.7 3E+02 0.0066 19.5 5.6 63 33-98 6-69 (76)
195 PF01071 GARS_A: Phosphoribosy 21.6 2E+02 0.0043 24.4 4.9 45 44-92 25-69 (194)
196 PF08734 GYD: GYD domain; Int 21.4 3.3E+02 0.0071 19.8 5.8 44 45-92 22-66 (91)
197 PF07876 Dabb: Stress responsi 20.9 3.1E+02 0.0067 19.3 7.3 58 35-92 5-73 (97)
198 cd04908 ACT_Bt0572_1 N-termina 20.3 2.7E+02 0.0058 18.3 7.6 46 45-94 15-61 (66)
199 KOG3702 Nuclear polyadenylated 20.2 81 0.0018 31.6 2.5 78 27-104 507-584 (681)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=9.5e-24 Score=178.27 Aligned_cols=93 Identities=83% Similarity=1.411 Sum_probs=86.8
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCce
Q 025068 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRR 101 (258)
Q Consensus 22 ~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~ 101 (258)
...+..|.+.+|||||+|+|++.+|+|+++|++||+|++..||.|+.|+++|||+||+|+|.|+|++||+..+.+|+||+
T Consensus 3 ~~~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~ 82 (247)
T KOG0149|consen 3 HNNPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRK 82 (247)
T ss_pred CCCCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccC-CCCCC
Q 025068 102 ANCNLASL-GRPRP 114 (258)
Q Consensus 102 i~V~~a~~-~~~~~ 114 (258)
.+|++|.. .++|.
T Consensus 83 aNcnlA~lg~~pR~ 96 (247)
T KOG0149|consen 83 ANCNLASLGGKPRP 96 (247)
T ss_pred cccchhhhcCccCC
Confidence 99999986 44444
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=2.6e-19 Score=144.76 Aligned_cols=83 Identities=39% Similarity=0.719 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.++ ++|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999999865 779999999999
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
+..+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 9654
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.6e-17 Score=152.13 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=78.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
.++...++|||+||++++||++|+++|++||.|++|+|++|+.|+++||||||+|.++++|++||++++ .+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 456678899999999999999999999999999999999999999999999999999999999999866 6799999999
Q ss_pred EeccC
Q 025068 105 NLASL 109 (258)
Q Consensus 105 ~~a~~ 109 (258)
.+++.
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 99864
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=4.9e-17 Score=148.63 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
.....+|||+||+.++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|.+||+.++ ..|+||.|+|.+
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3445589999999999999999999999999999999999999999999999999999999999976 569999999999
Q ss_pred ccCCCC
Q 025068 107 ASLGRP 112 (258)
Q Consensus 107 a~~~~~ 112 (258)
+..+..
T Consensus 346 ~~~~~~ 351 (352)
T TIGR01661 346 KTNKAY 351 (352)
T ss_pred ccCCCC
Confidence 976643
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.71 E-value=1.8e-16 Score=153.92 Aligned_cols=87 Identities=31% Similarity=0.512 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||++++|+++|+++|++||.|++|+|+.| .++++||||||+|.+.++|++||++++ ..|+||+|+|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999999 479999999999999999999999866 669999999999
Q ss_pred ccCCCCCCC
Q 025068 107 ASLGRPRPQ 115 (258)
Q Consensus 107 a~~~~~~~~ 115 (258)
|.+++.+..
T Consensus 361 a~~k~~~~~ 369 (562)
T TIGR01628 361 AQRKEQRRA 369 (562)
T ss_pred ccCcHHHHH
Confidence 987765543
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=2.2e-16 Score=144.68 Aligned_cols=83 Identities=24% Similarity=0.421 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC--ceEEEE
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RRANCN 105 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~V~ 105 (258)
...++|||+||+.+++|++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++ .+|++ ++|+|+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999976 44655 689999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++....
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 986543
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.2e-16 Score=146.06 Aligned_cols=81 Identities=30% Similarity=0.459 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
..++|||+|||.+++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|.|+.|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36799999999999999999999999999999999999999999999999999999999999866 56999999999986
Q ss_pred CC
Q 025068 109 LG 110 (258)
Q Consensus 109 ~~ 110 (258)
.+
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 44
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=4.3e-16 Score=137.34 Aligned_cols=82 Identities=30% Similarity=0.579 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
...+.++|+|+|||+...|-||+.+|++||.|.+|+||.+. .-||||+||+|++.++|++|-++++ ..|.||+|+|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 45578899999999999999999999999999999999984 7799999999999999999999977 56999999999
Q ss_pred eccCC
Q 025068 106 LASLG 110 (258)
Q Consensus 106 ~a~~~ 110 (258)
.|+.+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 99755
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.1e-15 Score=128.43 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~ 106 (258)
..+.++|-|.||+.+++|++|+++|.+||.|.+|.|.+|+.||.+||||||+|.++++|.+||+.++.. .+.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 346788999999999999999999999999999999999999999999999999999999999998755 8889999999
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9653
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.3e-15 Score=127.57 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
.++|+||||||+.-++|++||+.|+.||.|.+|+|.++ +||+||.|++.|.|.+||.++| .+|.|..++|.|.
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 56899999999999999999999999999999999988 5799999999999999999965 7899999999998
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
+...
T Consensus 236 Ke~~ 239 (321)
T KOG0148|consen 236 KEGD 239 (321)
T ss_pred ccCC
Confidence 6543
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=1.6e-15 Score=106.11 Aligned_cols=69 Identities=36% Similarity=0.681 Sum_probs=64.1
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEE
Q 025068 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRAN 103 (258)
Q Consensus 34 lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~ 103 (258)
|||+|||.++++++|+++|++||.|+.+++..+ .+++.+++|||+|++.++|++||+.+ +..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 47999999999999999999999975 4679999875
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.3e-15 Score=129.80 Aligned_cols=82 Identities=40% Similarity=0.599 Sum_probs=77.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCC-ccCCceEEEEeccC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNLASL 109 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~V~~a~~ 109 (258)
-..|||+.|..+|+-++||+.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||..|+. -|++|.|+-+||.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999884 59999999999987
Q ss_pred CCC
Q 025068 110 GRP 112 (258)
Q Consensus 110 ~~~ 112 (258)
|..
T Consensus 142 Kp~ 144 (321)
T KOG0148|consen 142 KPS 144 (321)
T ss_pred Ccc
Confidence 763
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=5.3e-14 Score=135.86 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC--CCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~f--G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
..++|||+||+++++|++|+++|++| |+|++|++++ +||||+|++.++|++||+.++ .+|+|+.|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 9999998764 499999999999999999866 679999999999
Q ss_pred ccCCC
Q 025068 107 ASLGR 111 (258)
Q Consensus 107 a~~~~ 111 (258)
+++..
T Consensus 304 Akp~~ 308 (578)
T TIGR01648 304 AKPVD 308 (578)
T ss_pred ccCCC
Confidence 97643
No 14
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=4.9e-15 Score=123.39 Aligned_cols=88 Identities=30% Similarity=0.551 Sum_probs=80.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
|.+-+...+|-|-||...++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+ .+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 5566677899999999999999999999999999999999999999999999999999999999999976 679999999
Q ss_pred EEeccCCCC
Q 025068 104 CNLASLGRP 112 (258)
Q Consensus 104 V~~a~~~~~ 112 (258)
|..|.-...
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999874433
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1e-14 Score=126.99 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEeccC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (258)
.++|||+||+++++|++|+++|+.||+|++|+|++|+. .+|||||+|++.++|++||..++..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999853 57899999999999999997666889999999999863
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.58 E-value=8.2e-15 Score=141.82 Aligned_cols=82 Identities=18% Similarity=0.373 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||+.++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|.+||+.+| .+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 356799999999999999999999999999999999999999999999999999999999999977 5699999999998
Q ss_pred cCC
Q 025068 108 SLG 110 (258)
Q Consensus 108 ~~~ 110 (258)
..+
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 743
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=6.6e-15 Score=103.78 Aligned_cols=69 Identities=35% Similarity=0.645 Sum_probs=63.3
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 34 lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
|||+|||+++++++|+++|+.+|.|.++++.+++. ++.+++|||+|.+.++|++|++.++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999976 679999875
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=8.3e-14 Score=127.25 Aligned_cols=78 Identities=27% Similarity=0.420 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
.+.+.|||+||+.++|||.|+++|++||.|++|+.++| ||||+|.++++|.+|++.++ ++|+|..|.|.+|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 46789999999999999999999999999999998877 99999999999999999976 7799999999999
Q ss_pred cCCCCCC
Q 025068 108 SLGRPRP 114 (258)
Q Consensus 108 ~~~~~~~ 114 (258)
++...++
T Consensus 329 KP~~k~k 335 (506)
T KOG0117|consen 329 KPVDKKK 335 (506)
T ss_pred CChhhhc
Confidence 8654443
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=8.3e-15 Score=133.24 Aligned_cols=88 Identities=30% Similarity=0.464 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC--CccCC--ce
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDG--RR 101 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~G--~~ 101 (258)
.+|.+.-+|||+-||..++|+|||++|++||.|.+|.|++||.|+.+||||||+|.+.++|.+||..++ ++|-| ..
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 345667799999999999999999999999999999999999999999999999999999999999854 44554 67
Q ss_pred EEEEeccCCCCC
Q 025068 102 ANCNLASLGRPR 113 (258)
Q Consensus 102 i~V~~a~~~~~~ 113 (258)
|.|++|+.++.|
T Consensus 109 vqvk~Ad~E~er 120 (510)
T KOG0144|consen 109 VQVKYADGERER 120 (510)
T ss_pred eeecccchhhhc
Confidence 899999866555
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=1.1e-14 Score=140.88 Aligned_cols=80 Identities=33% Similarity=0.591 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||+.+++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.++ ..|+|+.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 356899999999999999999999999999999999999999999999999999999999999866 6699999999865
Q ss_pred c
Q 025068 108 S 108 (258)
Q Consensus 108 ~ 108 (258)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 21
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.4e-14 Score=126.35 Aligned_cols=80 Identities=34% Similarity=0.619 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC-CCCccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~-~~~~i~G~~i~V~~a 107 (258)
...++|||+.|+.+++|++|++.|++||.|+.|.||+|+.||++||||||+|+++.+..+|-++ .+..|+|+.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4678999999999999999999999999999999999999999999999999999999999998 456799999999876
Q ss_pred c
Q 025068 108 S 108 (258)
Q Consensus 108 ~ 108 (258)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 3
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=2e-14 Score=139.71 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=72.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccC
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (258)
+|||+||+.++||++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++||+.++ ..|.|+.|+|.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 79999999999999999999999999999999999999999999999999999999999977 559999999998753
No 23
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.1e-14 Score=116.89 Aligned_cols=75 Identities=28% Similarity=0.449 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
-.++|||+||+.++++.||+.+|.+||.|.+|.|-+++ .|||||+|++..+|+.|+..|+ ..|+|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 47899999999999999999999999999999887654 6899999999999999999976 67999999999985
Q ss_pred C
Q 025068 109 L 109 (258)
Q Consensus 109 ~ 109 (258)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=3.8e-14 Score=134.20 Aligned_cols=83 Identities=25% Similarity=0.393 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
+...++|||+||+.++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||..++..|.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999987778899999999987
Q ss_pred cCC
Q 025068 108 SLG 110 (258)
Q Consensus 108 ~~~ 110 (258)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 543
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=3.7e-14 Score=136.90 Aligned_cols=77 Identities=30% Similarity=0.441 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Ccc-CCceEEEEec
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI-DGRRANCNLA 107 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i-~G~~i~V~~a 107 (258)
..++|||+|||++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.++|++||+.++ .+| .++.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 689999999999999999999999976 445 4666655433
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-14 Score=122.45 Aligned_cols=85 Identities=29% Similarity=0.475 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
.+-++||||+|.++++|.-|...|..||+|++|++..|-.++++|||+||+|...|+|.+||..++ .+|.||.|+|++|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 346799999999999999999999999999999999999999999999999999999999999987 7799999999999
Q ss_pred cCCCCC
Q 025068 108 SLGRPR 113 (258)
Q Consensus 108 ~~~~~~ 113 (258)
.+.+.+
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 866543
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.5e-14 Score=129.70 Aligned_cols=80 Identities=28% Similarity=0.442 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Ccc-CCceEEEEe
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI-DGRRANCNL 106 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i-~G~~i~V~~ 106 (258)
..-|.||||.||.++.|++|..+|++.|+|-+++|+.|+.+|.+||||||+|.+.++|++||+.+| ++| .||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999955 665 589998876
Q ss_pred cc
Q 025068 107 AS 108 (258)
Q Consensus 107 a~ 108 (258)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 64
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1e-14 Score=132.65 Aligned_cols=87 Identities=24% Similarity=0.357 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCC--cc--CCceEEEE
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP--FI--DGRRANCN 105 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~--~i--~G~~i~V~ 105 (258)
++++|||+.|+..++|++++++|++||.|++|.|++|.. +.+||||||+|+++|.|..||+.+|. ++ +..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 378999999999999999999999999999999999985 99999999999999999999999773 34 45789999
Q ss_pred eccCCCCCCCCc
Q 025068 106 LASLGRPRPQVL 117 (258)
Q Consensus 106 ~a~~~~~~~~~~ 117 (258)
+|+.++++..++
T Consensus 202 FADtqkdk~~~~ 213 (510)
T KOG0144|consen 202 FADTQKDKDGKR 213 (510)
T ss_pred ecccCCCchHHH
Confidence 999887775443
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.50 E-value=1.4e-13 Score=131.98 Aligned_cols=83 Identities=23% Similarity=0.454 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||+.++++++|+++|+.||.|+.+.|++++.+|+++|||||+|.+.++|++||+.++ ..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999999999899999999999999999999999876 6699999999999
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
....
T Consensus 373 ~~~~ 376 (509)
T TIGR01642 373 CVGA 376 (509)
T ss_pred ccCC
Confidence 6543
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=1.6e-13 Score=129.85 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
.++|||+||+.++++++|+++|++||.|+.|.|++++.+++++|||||+|.+.++|++||+.++ ..|.|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999999989999999999999999999999866 56999999999987
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2e-13 Score=117.36 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (258)
...+|||+||++++||++|+++|+.||+|++|+|++| ++.+++|||+|+++++++.||...+.+|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 3468999999999999999999999999999999998 455689999999999999999888899999999998764
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.5e-13 Score=116.77 Aligned_cols=83 Identities=28% Similarity=0.450 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCC-ccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~V~~ 106 (258)
++..++|.|.-||.++|+||||.+|...|+|++|++++|+.+|.+.||+||.|.++++|++||..++. .+..|.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45567899999999999999999999999999999999999999999999999999999999999774 59999999999
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
|++.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9654
No 33
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=8.3e-14 Score=108.04 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
.++++|||+||+..++||+|.++|+++|+|+.|.+-.|+.+....|||||+|.+.++|+.|+.-++ ..++.+.|.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 468999999999999999999999999999999999999988999999999999999999999966 5699999999987
Q ss_pred c
Q 025068 108 S 108 (258)
Q Consensus 108 ~ 108 (258)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=2.7e-13 Score=93.74 Aligned_cols=71 Identities=31% Similarity=0.566 Sum_probs=65.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+|||+||+.++++++|+++|++||.|.++++..++ +.++++|||+|.+.++|++|++.++ ..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999886 7788999999999999999999866 67999998874
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=2e-13 Score=126.22 Aligned_cols=78 Identities=14% Similarity=0.288 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCH--HHHHHHhcCCC-CccCCceEEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP--EAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~--~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
.....+||||||.+++++++|+.+|+.||.|.+|.|+++ || ||||||+|.+. +++.+||+.++ .+++|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345679999999999999999999999999999999954 67 99999999987 68999999976 6699999999
Q ss_pred EeccC
Q 025068 105 NLASL 109 (258)
Q Consensus 105 ~~a~~ 109 (258)
+.|+.
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99964
No 36
>smart00360 RRM RNA recognition motif.
Probab=99.46 E-value=3.3e-13 Score=92.91 Aligned_cols=70 Identities=36% Similarity=0.620 Sum_probs=64.8
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 36 VGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 36 VgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
|+||+.++++++|+++|+.||.|.++.+..++.+++++++|||+|.+.++|++|++.++ ..++++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999998889999999999999999999999876 66899998874
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.45 E-value=1.1e-13 Score=124.30 Aligned_cols=104 Identities=39% Similarity=0.696 Sum_probs=87.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEeccC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (258)
+.++|||++|+|++++|.|++.|+.||+|.+|.|++|+.+++++||+||+|.+.+.+.++|....+.|+|+.|.++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 68999999999999999999999999999999999999999999999999999999999999988999999999999976
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCC
Q 025068 110 GRPRPQVLYGRLRPATLFSGSTQAT 134 (258)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (258)
++......+ .....+.++|+.+..
T Consensus 85 r~~~~~~~~-~~~tkkiFvGG~~~~ 108 (311)
T KOG4205|consen 85 REDQTKVGR-HLRTKKIFVGGLPPD 108 (311)
T ss_pred ccccccccc-ccceeEEEecCcCCC
Confidence 654332221 113445556655443
No 38
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=2.2e-14 Score=117.39 Aligned_cols=83 Identities=28% Similarity=0.491 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
.++.-|||||||.+.||.+|.-+|++||+|++|.+++|+.||+||||||++|+|..+..-||..+| ..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 456689999999999999999999999999999999999999999999999999999999998876 4599999999876
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
..-+
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5433
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=3.5e-13 Score=115.84 Aligned_cols=78 Identities=29% Similarity=0.628 Sum_probs=74.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
.++|||+||+.++++++|+++|.+||.|..+.|..|+.+++++|||||+|.+.++|.+||+.++ ..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6899999999999999999999999999999999998899999999999999999999999977 67999999999975
No 40
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=2.5e-13 Score=126.93 Aligned_cols=81 Identities=32% Similarity=0.592 Sum_probs=77.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccCC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (258)
++||||||+.+++|++|.++|+..|.|.+++++.|+.||+.|||+|++|.+.+++++|++.++ .++.|++|+|+++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999977 7799999999999755
Q ss_pred CC
Q 025068 111 RP 112 (258)
Q Consensus 111 ~~ 112 (258)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 41
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=6.5e-13 Score=103.99 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=81.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceE
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (258)
.|.....--.|||.++..+++|++|.+.|..||+|+.+.+..|+.||-.|||++|+|++.++|++||..+| ..|.|..|
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 34444556689999999999999999999999999999999999999999999999999999999999977 67999999
Q ss_pred EEEeccCCCCC
Q 025068 103 NCNLASLGRPR 113 (258)
Q Consensus 103 ~V~~a~~~~~~ 113 (258)
.|.|+..+.+.
T Consensus 145 ~VDw~Fv~gp~ 155 (170)
T KOG0130|consen 145 SVDWCFVKGPE 155 (170)
T ss_pred eEEEEEecCCc
Confidence 99999866553
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.41 E-value=3.4e-13 Score=117.55 Aligned_cols=71 Identities=30% Similarity=0.560 Sum_probs=66.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCC-ccCCceEEEEeccCC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNLASLG 110 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~V~~a~~~ 110 (258)
.+|||+|||.++++.+|+.+|++||+|++|+||++ ||||+.++.+.++.||..+++ +|+|+.|+|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999988 999999999999999998775 599999999998766
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=2.5e-13 Score=117.18 Aligned_cols=87 Identities=28% Similarity=0.393 Sum_probs=80.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~ 103 (258)
..+..+-|+|||-.||.+..+.||..+|-.||.|.+.||..|+.|..+|+|+||.|+++.+++.||..+|.. |+-|+|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 345667899999999999999999999999999999999999999999999999999999999999998855 9999999
Q ss_pred EEeccCCC
Q 025068 104 CNLASLGR 111 (258)
Q Consensus 104 V~~a~~~~ 111 (258)
|.+.++|+
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99986554
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.39 E-value=1.8e-12 Score=123.93 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 28 ~~~~~~lfVgnLp~-~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
....++|||+||++ ++++++|+++|+.||.|++|+|++++ +|+|||+|.+.++|++||+.++ ..|.|+.|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34668999999998 69999999999999999999999874 6899999999999999999866 66999999999
Q ss_pred eccCC
Q 025068 106 LASLG 110 (258)
Q Consensus 106 ~a~~~ 110 (258)
+++.+
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=3.5e-12 Score=88.58 Aligned_cols=73 Identities=32% Similarity=0.603 Sum_probs=66.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCceEEEEe
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~ 106 (258)
+|+|+||+.++++++|+++|+.+|.|..+.+..++.+ +.++++||+|.+.++|..|++.++.. +++++|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988754 77899999999999999999997754 9999998864
No 46
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=9e-13 Score=107.99 Aligned_cols=81 Identities=28% Similarity=0.385 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCC-ccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~V~~ 106 (258)
.....+|||+||+..++++.|.++|-+.|.|.++++.+|+.+...+|||||+|.++|+|+-||+.++. .+-||+|+|+.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999884 49999999999
Q ss_pred cc
Q 025068 107 AS 108 (258)
Q Consensus 107 a~ 108 (258)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 96
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.37 E-value=1.7e-11 Score=110.12 Aligned_cols=86 Identities=31% Similarity=0.585 Sum_probs=80.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEeccC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (258)
+.++|||++|+.++++++|++.|++||.|.++.++.|+.+.+.+||+||+|.+++.+++++...-++|+++.+.|+.|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999988999999999999987
Q ss_pred CCCCCC
Q 025068 110 GRPRPQ 115 (258)
Q Consensus 110 ~~~~~~ 115 (258)
+.....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 765543
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.36 E-value=2.8e-12 Score=122.68 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=67.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC--C-CccCCceEEEEec
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP--T-PFIDGRRANCNLA 107 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~--~-~~i~G~~i~V~~a 107 (258)
+++|||+||+++++|++|+++|++||.|++|+|+++ |++|||+|++.++|++||+.+ + ..|+|+.|+|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 578999999999999999999999999999999864 579999999999999999863 3 5699999999999
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
..++
T Consensus 76 ~~~~ 79 (481)
T TIGR01649 76 TSQE 79 (481)
T ss_pred CCcc
Confidence 7543
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=5.6e-12 Score=94.52 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCC-ccC
Q 025068 20 QYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FID 98 (258)
Q Consensus 20 ~~~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~ 98 (258)
...+...+.+.++-|||.|||.++|.|++.++|.+||.|..|+|-..+. .+|-|||.|++..+|.+||..+.. .++
T Consensus 7 ~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 7 KKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred ccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccC
Confidence 3444555666788999999999999999999999999999999976644 588999999999999999999774 499
Q ss_pred CceEEEEeccCC
Q 025068 99 GRRANCNLASLG 110 (258)
Q Consensus 99 G~~i~V~~a~~~ 110 (258)
++.|.|-+-...
T Consensus 84 ~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 84 NRYLVVLYYQPE 95 (124)
T ss_pred CceEEEEecCHH
Confidence 999999876543
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=7.2e-12 Score=103.05 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V~~a 107 (258)
...++|||+|||.+|.|.+|+++|.|||.|.+|++... -...+||||+|++..+|+.||..- +..++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35789999999999999999999999999999987443 234579999999999999999984 46699999999999
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
...+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 6544
No 51
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=5.8e-12 Score=108.46 Aligned_cols=92 Identities=25% Similarity=0.322 Sum_probs=81.4
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCC-cc
Q 025068 19 FQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FI 97 (258)
Q Consensus 19 ~~~~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i 97 (258)
......|......-.|||-||..+++|.-|..+|..||.|..|+|++|..|.+.|||+||+..+-++|..||..++. .+
T Consensus 266 l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l 345 (360)
T KOG0145|consen 266 LAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 345 (360)
T ss_pred eeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc
Confidence 33344555566677899999999999999999999999999999999999999999999999999999999999875 59
Q ss_pred CCceEEEEeccCC
Q 025068 98 DGRRANCNLASLG 110 (258)
Q Consensus 98 ~G~~i~V~~a~~~ 110 (258)
.+|.|.|++...+
T Consensus 346 g~rvLQVsFKtnk 358 (360)
T KOG0145|consen 346 GDRVLQVSFKTNK 358 (360)
T ss_pred cceEEEEEEecCC
Confidence 9999999987644
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=5e-12 Score=118.16 Aligned_cols=87 Identities=33% Similarity=0.523 Sum_probs=77.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC----C---Ccc
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP----T---PFI 97 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~----~---~~i 97 (258)
+.++...++|||.||+++++|++|.+.|++||+|..+.|+.++.|+.++|.|||.|.+.+++.+||+.- . ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 444455689999999999999999999999999999999999999999999999999999999999874 1 238
Q ss_pred CCceEEEEeccCCC
Q 025068 98 DGRRANCNLASLGR 111 (258)
Q Consensus 98 ~G~~i~V~~a~~~~ 111 (258)
+||.|+|.+|..++
T Consensus 366 ~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRK 379 (678)
T ss_pred eccEEeeeeccchH
Confidence 99999999997553
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=1.3e-11 Score=87.45 Aligned_cols=61 Identities=30% Similarity=0.513 Sum_probs=53.8
Q ss_pred HHHHHHHHh----cCCCEEEEE-EeecCCC--CCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 45 SETMRRYFE----QFGEILEAV-VITDKNT--GRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 45 e~~L~~~F~----~fG~I~~v~-v~~d~~t--g~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+++|+++|+ +||.|.+|. |+.++.+ +++|||+||+|.+.++|.+||..++ ..++|+.|+|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678888888 999999995 7777766 8999999999999999999999966 67999999873
No 54
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=6.8e-12 Score=102.86 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=76.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v-~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
..+|||+||+++++|..|.++|++||.|.+. +|++|..||.++||+||.|.+.|.+.+||+.++ ..++.++|.|.++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 3689999999999999999999999998764 899999999999999999999999999999976 66999999999998
Q ss_pred CCCCCC
Q 025068 109 LGRPRP 114 (258)
Q Consensus 109 ~~~~~~ 114 (258)
++..+.
T Consensus 176 k~~~kg 181 (203)
T KOG0131|consen 176 KKDTKG 181 (203)
T ss_pred ecCCCc
Confidence 765544
No 55
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.4e-11 Score=113.79 Aligned_cols=80 Identities=33% Similarity=0.550 Sum_probs=72.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccCCC
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLGR 111 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~~ 111 (258)
.|||.||+.++|.++|.++|+.||+|++|+|.+|.+ | +||| ||+|+++++|++||+.+| ..+.++.|.|.....++
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999984 5 9999 999999999999999976 45899999999998766
Q ss_pred CCCC
Q 025068 112 PRPQ 115 (258)
Q Consensus 112 ~~~~ 115 (258)
.|..
T Consensus 155 er~~ 158 (369)
T KOG0123|consen 155 EREA 158 (369)
T ss_pred hhcc
Confidence 5543
No 56
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1e-11 Score=110.94 Aligned_cols=81 Identities=30% Similarity=0.478 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....+.|||..|.+-+++++|+-+|+.||.|.+|.||+|+.||.+..||||+|++.+++++|.-.|. ..|+.++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3456799999999999999999999999999999999999999999999999999999999999965 569999999998
Q ss_pred cc
Q 025068 107 AS 108 (258)
Q Consensus 107 a~ 108 (258)
+.
T Consensus 316 SQ 317 (479)
T KOG0415|consen 316 SQ 317 (479)
T ss_pred hh
Confidence 75
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.9e-11 Score=114.29 Aligned_cols=81 Identities=25% Similarity=0.447 Sum_probs=73.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (258)
--+|+|.||||.+.+++|+.+|+.||.|.+|.|.+.+. ++.+|||||.|.+..+|.+||+.+| ++|+||.|-|.||..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 45899999999999999999999999999999998876 6666999999999999999999966 779999999999976
Q ss_pred CCC
Q 025068 110 GRP 112 (258)
Q Consensus 110 ~~~ 112 (258)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 643
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.2e-11 Score=106.93 Aligned_cols=85 Identities=28% Similarity=0.433 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC--CccC--CceEEEE
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFID--GRRANCN 105 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~--G~~i~V~ 105 (258)
++++||||.|.+.-+|||++.+|..||.|++|.|++..+ |.+||++||.|.+..+|+.||..++ .++- ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 578999999999999999999999999999999999985 9999999999999999999999976 2343 4679999
Q ss_pred eccCCCCCCC
Q 025068 106 LASLGRPRPQ 115 (258)
Q Consensus 106 ~a~~~~~~~~ 115 (258)
+++..+.|..
T Consensus 97 ~ADTdkER~l 106 (371)
T KOG0146|consen 97 FADTDKERTL 106 (371)
T ss_pred eccchHHHHH
Confidence 9987766543
No 59
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.19 E-value=1.4e-10 Score=107.93 Aligned_cols=80 Identities=25% Similarity=0.381 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEeccC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (258)
....|||+|||.++++++|+++|..||.|++..|......++..+||||+|.+.++++.||+.....|++++|.|+....
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34559999999999999999999999999988776654335556999999999999999999986679999999998744
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.18 E-value=2.2e-11 Score=114.04 Aligned_cols=78 Identities=33% Similarity=0.603 Sum_probs=72.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccCC
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (258)
+|||+||.++++|++|+.+|+.||.|+.|.+.+|..||.+|||+||+|.+.++|.+|++.+| -+|-|+.|+|...+.+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 39999999999999999999999999999999999899999999999999999999999976 5699999999877543
No 61
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.17 E-value=1.4e-10 Score=109.09 Aligned_cols=80 Identities=23% Similarity=0.419 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
-.++|||.+|...+...+|+.+|++||+|+-.+|+++..+--.+||+||++.+.++|.+||+.++ .+|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999999999998888889999999999999999999988 56999999999886
Q ss_pred C
Q 025068 109 L 109 (258)
Q Consensus 109 ~ 109 (258)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 62
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=9.2e-11 Score=104.58 Aligned_cols=81 Identities=32% Similarity=0.480 Sum_probs=73.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC-CCC-ccCCc
Q 025068 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTP-FIDGR 100 (258)
Q Consensus 23 ~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~-~~~-~i~G~ 100 (258)
..|.+|...++|||++|.+.++|.+|+++|.+||+|+++.++..+ ++|||+|.+.++|++|.++ .+. .|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 678889999999999999999999999999999999999987764 4999999999999999998 454 49999
Q ss_pred eEEEEeccC
Q 025068 101 RANCNLASL 109 (258)
Q Consensus 101 ~i~V~~a~~ 109 (258)
+|+|.|...
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999966
No 63
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=8e-11 Score=79.52 Aligned_cols=55 Identities=27% Similarity=0.549 Sum_probs=48.3
Q ss_pred HHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 48 MRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 48 L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
|+++|++||+|+++.+..++ +++|||+|.+.++|++|++.++ ..++|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997764 5899999999999999999865 5699999999985
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=2.2e-11 Score=109.17 Aligned_cols=77 Identities=32% Similarity=0.605 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
.|+||||.|.+++.||.||..|..||.|+++.+-+|+.|+++|||+||+|+-+|.|+-|++.+| .+++||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 5899999999999999999999999999999999999999999999999999999999999987 5699999999854
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.15 E-value=1.2e-10 Score=106.66 Aligned_cols=79 Identities=18% Similarity=0.405 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHh-cCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~-~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
...+.+||.|||.++.+.+|+++|. +.|+|+.|.++.|. +|++||+|.|+|+++|.++||++.++ +++.||.|+|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999995 68999999999998 59999999999999999999999988 569999999987
Q ss_pred cc
Q 025068 107 AS 108 (258)
Q Consensus 107 a~ 108 (258)
..
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 64
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=1e-10 Score=102.20 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|+|+||.+.++.+||++.|++||.|.+|+|++| |+||+|+-.++|..||..++ .+|.|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 446779999999999999999999999999999999987 99999999999999999855 779999999999
Q ss_pred ccCCC
Q 025068 107 ASLGR 111 (258)
Q Consensus 107 a~~~~ 111 (258)
++++.
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 97653
No 67
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.09 E-value=3.8e-10 Score=108.23 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=62.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcC------------CCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQF------------GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~f------------G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (258)
+..+...++|||+||+.++|+++|+++|.++ +.|..+.+ .+.+|||||+|.+.++|++||+.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcC
Confidence 3455677899999999999999999999975 23333333 45678999999999999999975
Q ss_pred CCCccCCceEEEEecc
Q 025068 93 PTPFIDGRRANCNLAS 108 (258)
Q Consensus 93 ~~~~i~G~~i~V~~a~ 108 (258)
++..|.|+.|+|....
T Consensus 243 ~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPH 258 (509)
T ss_pred CCeEeeCceeEecCcc
Confidence 5567999999997553
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.08 E-value=4.1e-10 Score=94.15 Aligned_cols=87 Identities=24% Similarity=0.382 Sum_probs=76.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcC-CCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCce
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRR 101 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~f-G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~ 101 (258)
...+......++|..|+.-+.+.+|..+|.+| |.|+++++-+++.||.|||||||+|++.|.|+-|-+.||.. +.++.
T Consensus 42 ~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 42 EKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 34455667789999999999999999999998 78888888899999999999999999999999999998754 88999
Q ss_pred EEEEeccCC
Q 025068 102 ANCNLASLG 110 (258)
Q Consensus 102 i~V~~a~~~ 110 (258)
|.|..-.+.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999887544
No 69
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.03 E-value=9.2e-10 Score=93.26 Aligned_cols=81 Identities=26% Similarity=0.447 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHH----HHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCceEE
Q 025068 29 TTYTKVFVGGLAWETQSETMRR----YFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRAN 103 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~----~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~ 103 (258)
..+.+|||.||++.+..++|++ +|+.||+|.+|...+ |.+.||-|||.|++.+.|..|+..++.. +-||.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3455999999999999999998 999999999987755 5889999999999999999999997755 8999999
Q ss_pred EEeccCCCC
Q 025068 104 CNLASLGRP 112 (258)
Q Consensus 104 V~~a~~~~~ 112 (258)
|.+|..+..
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999976643
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.02 E-value=5.2e-10 Score=108.40 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (258)
+++||||.|+.+++|.+|+.+|+.||+|.+|.++.. ++||||+....++|.+|+.++. ..|..+.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 579999999999999999999999999999998765 5699999999999999999965 669999999999987
Q ss_pred CCCCC
Q 025068 110 GRPRP 114 (258)
Q Consensus 110 ~~~~~ 114 (258)
+-.+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 66554
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=5.8e-10 Score=100.21 Aligned_cols=82 Identities=18% Similarity=0.385 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCC-ccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~V~~ 106 (258)
....++|||..+..+.+|+||+.+|+.||+|+.|++-++..++.+|||+|++|.+......||..+|- .++|.-|+|-.
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 35678999999999999999999999999999999999998899999999999999999999999984 59999999987
Q ss_pred ccC
Q 025068 107 ASL 109 (258)
Q Consensus 107 a~~ 109 (258)
+..
T Consensus 287 ~vT 289 (544)
T KOG0124|consen 287 CVT 289 (544)
T ss_pred ccC
Confidence 753
No 72
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.97 E-value=4.5e-10 Score=96.56 Aligned_cols=85 Identities=33% Similarity=0.549 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
.+.++++.+||+|.|..+++++.|-..|.+|-.-...+|++|+.|+++|||+||.|.+..++.+|+.+++ +.|+.+.|+
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 3456778899999999999999999999999988899999999999999999999999999999999976 669999998
Q ss_pred EEeccC
Q 025068 104 CNLASL 109 (258)
Q Consensus 104 V~~a~~ 109 (258)
+....-
T Consensus 264 lRkS~w 269 (290)
T KOG0226|consen 264 LRKSEW 269 (290)
T ss_pred hhhhhH
Confidence 876543
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.3e-10 Score=102.45 Aligned_cols=88 Identities=32% Similarity=0.541 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
......+|||.||+..++++.|+++|+.+|+|++++|+.+. .++++||+||+|++.++|.+|+..++ ..+.++.|.|.
T Consensus 266 ~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~va 344 (369)
T KOG0123|consen 266 VSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVA 344 (369)
T ss_pred ccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhh
Confidence 35567799999999999999999999999999999999997 59999999999999999999999966 66999999999
Q ss_pred eccCCCCCCC
Q 025068 106 LASLGRPRPQ 115 (258)
Q Consensus 106 ~a~~~~~~~~ 115 (258)
++..+..++.
T Consensus 345 v~qr~~~r~~ 354 (369)
T KOG0123|consen 345 VAQRKEDRRA 354 (369)
T ss_pred HHhhhccchh
Confidence 9975554443
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.91 E-value=3.2e-09 Score=97.36 Aligned_cols=81 Identities=28% Similarity=0.450 Sum_probs=71.1
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCc
Q 025068 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (258)
Q Consensus 22 ~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~ 100 (258)
..+.-...+.|+|||.|||.+.|+..|++-|..||.|+.++|+. +|++|| .|.|.++++|++||..++ ..|+|+
T Consensus 527 g~a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr 601 (608)
T KOG4212|consen 527 GNAVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGR 601 (608)
T ss_pred cccccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCc
Confidence 34445567889999999999999999999999999999999865 488887 899999999999999977 569999
Q ss_pred eEEEEec
Q 025068 101 RANCNLA 107 (258)
Q Consensus 101 ~i~V~~a 107 (258)
.|+|.+.
T Consensus 602 ~I~V~y~ 608 (608)
T KOG4212|consen 602 NIKVTYF 608 (608)
T ss_pred eeeeeeC
Confidence 9999863
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=5.8e-09 Score=100.48 Aligned_cols=81 Identities=30% Similarity=0.538 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCC---CcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG---RSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg---~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
..+.++|||.||+++++.++|+.+|.+.|.|.++.|.+.++.. .|.|||||+|.+.++|++|++.++ +.|+|+.|.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 3444559999999999999999999999999999888776422 255999999999999999999987 679999999
Q ss_pred EEecc
Q 025068 104 CNLAS 108 (258)
Q Consensus 104 V~~a~ 108 (258)
|+++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99996
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=2e-09 Score=103.59 Aligned_cols=84 Identities=25% Similarity=0.449 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~ 106 (258)
+...++|+|.|||+..+..+++++|..||.|.+|+|.+....+.++|||||+|-+.++|.+|+..+..+ +-||+|.++|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 334779999999999999999999999999999999888666778999999999999999999997644 9999999999
Q ss_pred ccCCC
Q 025068 107 ASLGR 111 (258)
Q Consensus 107 a~~~~ 111 (258)
|....
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 96543
No 77
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.84 E-value=1e-08 Score=89.13 Aligned_cols=84 Identities=30% Similarity=0.429 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.+...++|.|.||+..|++++|+++|+.||.++.+.|-.|+ .|++.|.|-|.|+..++|.+||+..+ ..++|+.|+++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 45566899999999999999999999999999999999998 59999999999999999999999965 44999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
+.....
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 876443
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.78 E-value=2e-08 Score=87.12 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (258)
..+.+.+.+||+|++..++.++++..|+.||.|..+.|..|+.++.+|||+||+|.+.+.+++++..+...|.++.|+|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 34678899999999999999999999999999999999999999999999999999999999999955577999999999
Q ss_pred eccCC
Q 025068 106 LASLG 110 (258)
Q Consensus 106 ~a~~~ 110 (258)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87544
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.67 E-value=2.9e-07 Score=78.15 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cC---CceE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVI-TDKNTGRSKGYGFVTFREPEAARRACADPTPF-ID---GRRA 102 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~-~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~---G~~i 102 (258)
....++|||.+||.|+...||..+|..|---+.+.|. +++.....+-+|||+|.+..+|.+|+..+|.+ |+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3458999999999999999999999998766655443 33332345679999999999999999997744 54 7889
Q ss_pred EEEeccCCCCC
Q 025068 103 NCNLASLGRPR 113 (258)
Q Consensus 103 ~V~~a~~~~~~ 113 (258)
+|++|+...++
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99999755433
No 80
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.64 E-value=1.6e-07 Score=87.46 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEe
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (258)
+..+...|-+.+|||++|++||.++|+.++ |+++++.++ +|+..|-|||+|.++|++++|++++...+..|-|.|-.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 344566788899999999999999999984 677666554 79999999999999999999999987778999999988
Q ss_pred ccCCC
Q 025068 107 ASLGR 111 (258)
Q Consensus 107 a~~~~ 111 (258)
+..++
T Consensus 83 ~~~~e 87 (510)
T KOG4211|consen 83 AGGAE 87 (510)
T ss_pred cCCcc
Confidence 75444
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.63 E-value=1.2e-07 Score=84.92 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEE--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccC
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~--------~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~ 98 (258)
...+++|||.|||.++|.+++.++|+++|.|. .|+|-++.. |+.||=|+++|...++++-||..++ ..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45667899999999999999999999999886 478888875 9999999999999999999999976 5699
Q ss_pred CceEEEEecc
Q 025068 99 GRRANCNLAS 108 (258)
Q Consensus 99 G~~i~V~~a~ 108 (258)
|+.|+|+.|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999885
No 82
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.59 E-value=1.8e-06 Score=77.61 Aligned_cols=74 Identities=19% Similarity=0.401 Sum_probs=62.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCC--CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG--~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
.-.+|||||-|.+|+++|.+.+..-| .|.++|+..++.+|++||||+|...+...+++.++.+. ++|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34689999999999999999887766 56788888999999999999999999999999988876 5688765433
No 83
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=2.3e-08 Score=84.55 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
..++|||+||...++|+.|.++|..-|.|.+|.|..+++ ++.| ||||.|+++..+.-|++.++ ..+.+..|.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 467899999999999999999999999999999988875 7777 99999999999999999977 44888888777654
No 84
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.49 E-value=3.6e-07 Score=82.27 Aligned_cols=89 Identities=26% Similarity=0.274 Sum_probs=77.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEE--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 23 ~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~--------~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
.+..+.....+|||.+|+..+++++|.++|.+++.|. .|+|-+|+.|++.||-|.|+|+|...|+.||+-..
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred CccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 3444566778999999999999999999999999886 46788899999999999999999999999999854
Q ss_pred -CccCCceEEEEeccCCC
Q 025068 95 -PFIDGRRANCNLASLGR 111 (258)
Q Consensus 95 -~~i~G~~i~V~~a~~~~ 111 (258)
+.+.+..|+|.+|..+.
T Consensus 138 gkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 138 GKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccccCCCchhhhhhhcc
Confidence 77999999999996544
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=8.7e-08 Score=90.36 Aligned_cols=71 Identities=30% Similarity=0.377 Sum_probs=63.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
+...++|+|-|||..|++++|+++|+.||+|++|+. |-..+|..||+|-|..+|++|+++++ .+|.|++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 567789999999999999999999999999999654 45567899999999999999999977 669999988
No 86
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=1.7e-07 Score=80.01 Aligned_cols=70 Identities=29% Similarity=0.572 Sum_probs=62.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (258)
.+|||++|++.+.+++|+++|.+||.|.+|.+. .||+||+|.+..+|..||..++ ++|.+.++.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999998763 3589999999999999999966 668888888888853
No 87
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.30 E-value=2e-07 Score=87.84 Aligned_cols=87 Identities=23% Similarity=0.350 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEe
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (258)
++.+.++||+--|...+++.+|.++|+.+|.|.+|.||.|+.++++||.++|+|.|.+.+..||...+..+.|..|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 44566789999999999999999999999999999999999999999999999999999999998888889999999998
Q ss_pred ccCCCCC
Q 025068 107 ASLGRPR 113 (258)
Q Consensus 107 a~~~~~~ 113 (258)
....+.+
T Consensus 255 sEaeknr 261 (549)
T KOG0147|consen 255 SEAEKNR 261 (549)
T ss_pred cHHHHHH
Confidence 7655444
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.27 E-value=6.3e-06 Score=62.03 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=63.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc--CCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCc---c-CCceEEE
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPF---I-DGRRANC 104 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~--fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~---i-~G~~i~V 104 (258)
++|-|+|||...|.++|.+++.. .|....+-+.-|..+..+.|||||.|.+.+.|.+-.+.. +.. + ..|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999965 466677888889888999999999999999999988773 332 2 3667788
Q ss_pred Eecc
Q 025068 105 NLAS 108 (258)
Q Consensus 105 ~~a~ 108 (258)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8874
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=1.3e-06 Score=82.84 Aligned_cols=85 Identities=24% Similarity=0.482 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~ 106 (258)
-...+++||++|+..+++++++++++.||.+....++.|..+|.+|||||.+|.+......||+.++.+ +.++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 345679999999999999999999999999999999999999999999999999999999999998755 8889999998
Q ss_pred ccCCCC
Q 025068 107 ASLGRP 112 (258)
Q Consensus 107 a~~~~~ 112 (258)
|.....
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 875543
No 90
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.21 E-value=3.6e-06 Score=81.57 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~---tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (258)
+|...++|||+||+..++|+.|-..|..||.|..++|+..+. ..+.+-++||.|-+..+|++|++.++ ..|.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 356788999999999999999999999999999999998762 23455799999999999999999976 56899999
Q ss_pred EEEecc
Q 025068 103 NCNLAS 108 (258)
Q Consensus 103 ~V~~a~ 108 (258)
++.|++
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999883
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.20 E-value=3.7e-06 Score=78.57 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~-v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
.....|-+.+||+.++|+||.+||+..-.+.. +.++.++ .+++.|-|||.|++.|.|++||..+...|.-|-|.|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 45678999999999999999999998765555 4556665 478999999999999999999999777788888888766
Q ss_pred cC
Q 025068 108 SL 109 (258)
Q Consensus 108 ~~ 109 (258)
..
T Consensus 180 s~ 181 (510)
T KOG4211|consen 180 SR 181 (510)
T ss_pred HH
Confidence 53
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.06 E-value=5.4e-06 Score=74.25 Aligned_cols=78 Identities=28% Similarity=0.460 Sum_probs=70.1
Q ss_pred CcEEE-EcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEecc
Q 025068 31 YTKVF-VGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (258)
Q Consensus 31 ~~~lf-VgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (258)
..++| |++|+.++++++|+..|..+|.|..+++..++.++..+||++|+|.+.+...+++......+.++.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 34455 9999999999999999999999999999999999999999999999999999999873466999999998874
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.00 E-value=5e-05 Score=69.75 Aligned_cols=76 Identities=13% Similarity=0.261 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 31 YTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 31 ~~~lfVgnLp~~-~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
++.|.|.||..+ +|.+.|..+|.-||+|.+|+|+.++. --|+|.+.|...|+-|++.++ +.+.||+|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688999999665 99999999999999999999999863 479999999999999999976 67999999999986
Q ss_pred CCC
Q 025068 109 LGR 111 (258)
Q Consensus 109 ~~~ 111 (258)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 443
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=1.4e-05 Score=68.33 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=65.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceE
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (258)
-.....+.+.|+|.+|..++.+.+|++.|+.+|.++...+ .++++||+|++.+++.+||+.++ ..+.++.|
T Consensus 92 ~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l 163 (216)
T KOG0106|consen 92 YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRI 163 (216)
T ss_pred cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCcee
Confidence 3345678899999999999999999999999999955443 34589999999999999999976 66999999
Q ss_pred EEEeccC
Q 025068 103 NCNLASL 109 (258)
Q Consensus 103 ~V~~a~~ 109 (258)
.|.....
T Consensus 164 ~~~~~~~ 170 (216)
T KOG0106|consen 164 SVEKNSR 170 (216)
T ss_pred eecccCc
Confidence 9965543
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.89 E-value=1.8e-05 Score=60.59 Aligned_cols=69 Identities=28% Similarity=0.419 Sum_probs=43.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC------CccCCceEEEE
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT------PFIDGRRANCN 105 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~------~~i~G~~i~V~ 105 (258)
+.|.|.++...++.++|+++|+.||.|..|++.+... .|+|.|.+.+.|++|++.+. ..|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999998866533 79999999999999997532 23667766665
Q ss_pred e
Q 025068 106 L 106 (258)
Q Consensus 106 ~ 106 (258)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.81 E-value=7.3e-05 Score=54.41 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=46.0
Q ss_pred cEEEEcCCCCCCcHHH----HHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCceEEEE
Q 025068 32 TKVFVGGLAWETQSET----MRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCN 105 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~----L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~ 105 (258)
..|+|.|||.+.+... |+.++..+| .|.+| +.+-|+|.|.+.|.|.+|.+.++.+ +.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988776 555666665 55554 1357999999999999999997655 999999999
Q ss_pred ecc
Q 025068 106 LAS 108 (258)
Q Consensus 106 ~a~ 108 (258)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.77 E-value=2.1e-05 Score=66.99 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=50.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
.....+|||.||..+++||+|+.+|+.|--...++|.. + .| -+.+||+|++.+.|..|+..+.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CC--cceEeecHHHHHHHHHHHHHhh
Confidence 34456899999999999999999999998766666532 2 23 3589999999999999998754
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.76 E-value=0.00012 Score=71.31 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=64.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....+.|-|.|+|++++-+||.+||..|-.+-.-.+++-.+.|+..|-|.|.|++.++|.+|...++ +.|..++|+|.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3445689999999999999999999999766543333433459999999999999999999999976 559999988865
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.68 E-value=0.00014 Score=48.63 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=41.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHh
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai 90 (258)
+.|-|.+.+.+..+ ++.+.|..||+|+++.+..+ +-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 46778888877654 45668999999999887522 338999999999999986
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00015 Score=68.36 Aligned_cols=65 Identities=28% Similarity=0.490 Sum_probs=50.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCC---CCCccc---EEEEEEcCHHHHHHHhcCC
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKG---YGFVTFREPEAARRACADP 93 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~---tg~skG---~aFV~F~~~~~A~~Ai~~~ 93 (258)
..-.++||||+||++++|++|...|..||.+. |++..... --..|| |+|+.|+++..+.+.|.+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 34568999999999999999999999999865 44442111 123567 9999999999888877664
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.66 E-value=7e-05 Score=68.80 Aligned_cols=75 Identities=19% Similarity=0.336 Sum_probs=62.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-C--CccCCceEEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-T--PFIDGRRANC 104 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~--~~i~G~~i~V 104 (258)
.+.++.|.++|||++++|+||.+++..||+|+.+.+++.++ -||++|.|++.|..-+..- . ..+.++.|.|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 34678999999999999999999999999999998877653 7999999999887755442 2 3478899998
Q ss_pred Eecc
Q 025068 105 NLAS 108 (258)
Q Consensus 105 ~~a~ 108 (258)
.++.
T Consensus 99 q~sn 102 (492)
T KOG1190|consen 99 QYSN 102 (492)
T ss_pred hhhh
Confidence 8764
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.0002 Score=67.61 Aligned_cols=64 Identities=33% Similarity=0.416 Sum_probs=59.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHh-cCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~-~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (258)
+..++||||+||.-++.++|-.+|+ -||.|+-+-|-+|.+-+-.||-|-|+|++..+-.+||+.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4567999999999999999999999 699999999999977788999999999999999999987
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.60 E-value=0.00013 Score=65.62 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=61.0
Q ss_pred CcEEEEcCCCCCCcHHH------HHHHHhcCCCEEEEEEeecCCCCCc-ccEE--EEEEcCHHHHHHHhcCC-CCccCCc
Q 025068 31 YTKVFVGGLAWETQSET------MRRYFEQFGEILEAVVITDKNTGRS-KGYG--FVTFREPEAARRACADP-TPFIDGR 100 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~------L~~~F~~fG~I~~v~v~~d~~tg~s-kG~a--FV~F~~~~~A~~Ai~~~-~~~i~G~ 100 (258)
-.-+||-+|+..+..|+ -.++|.+||.|..|.|-+....-.+ .+.+ +|+|.+.|+|.+||.+. +..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999877776 3688999999999877554311111 2223 99999999999999995 4679999
Q ss_pred eEEEEeccCC
Q 025068 101 RANCNLASLG 110 (258)
Q Consensus 101 ~i~V~~a~~~ 110 (258)
.|++.+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999887654
No 104
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.54 E-value=0.00012 Score=67.61 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=59.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeec---CCC--CC--------cccEEEEEEcCHHHHHHHhc
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD---KNT--GR--------SKGYGFVTFREPEAARRACA 91 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d---~~t--g~--------skG~aFV~F~~~~~A~~Ai~ 91 (258)
..++...++|.+-|||.+-.-+.|.++|+.+|.|+.|+|... ... +. .+-+|||+|++.+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344568899999999999999999999999999999998776 221 11 25689999999999999999
Q ss_pred CCCCc
Q 025068 92 DPTPF 96 (258)
Q Consensus 92 ~~~~~ 96 (258)
.++.+
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 87643
No 105
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.45 E-value=0.00064 Score=51.48 Aligned_cols=78 Identities=24% Similarity=0.304 Sum_probs=51.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEE-EeecC------CCCCcccEEEEEEcCHHHHHHHhcCCCCccCCce
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAV-VITDK------NTGRSKGYGFVTFREPEAARRACADPTPFIDGRR 101 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~-v~~d~------~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~ 101 (258)
...+-|.|=+.|.+ ..+.|.+.|++||+|.+.. +.++. ..-....+-.|+|+++.+|.+||.+++..|.|..
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 34566888899988 4567788899999998774 11110 0011234889999999999999999998888764
Q ss_pred E-EEEec
Q 025068 102 A-NCNLA 107 (258)
Q Consensus 102 i-~V~~a 107 (258)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 46665
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.34 E-value=0.00087 Score=57.25 Aligned_cols=74 Identities=24% Similarity=0.301 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccC-CceEEEEe
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRRANCNL 106 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-G~~i~V~~ 106 (258)
.....||+-|||.+++.+.|..+|+.|.--++++++..+ ++.|||+|.+...+..|...+. ..|- ...+.|..
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 456789999999999999999999999999999887754 5799999999998888888754 2233 66666666
Q ss_pred c
Q 025068 107 A 107 (258)
Q Consensus 107 a 107 (258)
+
T Consensus 219 a 219 (221)
T KOG4206|consen 219 A 219 (221)
T ss_pred c
Confidence 5
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.33 E-value=0.002 Score=58.91 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=69.8
Q ss_pred CCCCCCCCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC
Q 025068 22 LNSPFGDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (258)
Q Consensus 22 ~~~p~~~~~~~~lfVgnLp~~-~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G 99 (258)
...|......+.+.|-+|+.. +.-+.|-.+|..||.|++|++++.+ .|-|.|+..|..++++||..++ ..+-|
T Consensus 278 ~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 278 YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCcccc
Confidence 344456677889999999875 6778899999999999999999876 3679999999999999999976 55889
Q ss_pred ceEEEEecc
Q 025068 100 RRANCNLAS 108 (258)
Q Consensus 100 ~~i~V~~a~ 108 (258)
.+|.|..++
T Consensus 353 ~kl~v~~Sk 361 (494)
T KOG1456|consen 353 GKLNVCVSK 361 (494)
T ss_pred ceEEEeecc
Confidence 999988874
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0012 Score=62.96 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=59.5
Q ss_pred CCCcEEEEcCCCCCC------cHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccC-Cc
Q 025068 29 TTYTKVFVGGLAWET------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GR 100 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~------te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-G~ 100 (258)
.-...|+|.|+|.-- -..-|.++|+++|+|..+.+.-+.. |..+||.|++|.+..+|+.|++.++ +.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 345678888887632 1234778899999999999988876 5599999999999999999999965 4444 56
Q ss_pred eEEEEec
Q 025068 101 RANCNLA 107 (258)
Q Consensus 101 ~i~V~~a 107 (258)
++.|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 6666543
No 109
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.09 E-value=0.003 Score=43.48 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=47.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcC---CCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQF---GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~f---G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (258)
+....+|+|.+++ +.+.++|+.+|..| ....+|+++.|. -|-|.|.+.+.|.+||..+
T Consensus 2 ~~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 2 TIRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred cceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3456789999995 47778999999998 235688999886 5789999999999999763
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.06 E-value=0.0013 Score=60.13 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=64.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCC-EEE--EEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCceEEEEe
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGE-ILE--AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~-I~~--v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~ 106 (258)
...|-+.+||.+.+.|+|.++|..|.. |.. |.++.+. .|+..|-|||.|.+.|+|..|....++. .+.|-|+|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 446889999999999999999999874 333 6777775 4899999999999999999999887655 4588888877
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
+...
T Consensus 359 ~S~e 362 (508)
T KOG1365|consen 359 CSVE 362 (508)
T ss_pred ccHH
Confidence 6543
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.01 E-value=0.00043 Score=68.79 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (258)
-.+|||.|+++..|+++|+.+++++|.++++.++..+. |+.||.+||.|.++.++.+++.... ..+.-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 45799999999999999999999999999999888884 9999999999999999999998865 346667777777654
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.92 E-value=0.005 Score=56.34 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC--CC-Cc
Q 025068 20 QYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD--PT-PF 96 (258)
Q Consensus 20 ~~~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~--~~-~~ 96 (258)
+-..+|.....+-.|.|.+|-..++|.+|.+.++.||.|.-+.++-.+. -+.|+|+|.+.|+.++.. .+ ..
T Consensus 20 e~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~ 93 (494)
T KOG1456|consen 20 EDNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIY 93 (494)
T ss_pred ccCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCccc
Confidence 3344555555667899999999999999999999999999887665533 799999999999999875 33 34
Q ss_pred cCCceEEEEeccCCC
Q 025068 97 IDGRRANCNLASLGR 111 (258)
Q Consensus 97 i~G~~i~V~~a~~~~ 111 (258)
|.|....++++++++
T Consensus 94 i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQC 108 (494)
T ss_pred ccCchhhcccchhhh
Confidence 888888888775443
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.82 E-value=0.0013 Score=60.13 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=56.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----CCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEE
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQF----GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~f----G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (258)
+.-.|-+.+||++.++.++.++|..- +..+.|.+++.. .|+..|-|||.|..+++|+.||.++...|+.|-|++-
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34456677999999999999999632 244566666655 4899999999999999999999886555655555443
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.72 E-value=0.00018 Score=71.35 Aligned_cols=71 Identities=28% Similarity=0.392 Sum_probs=61.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~ 100 (258)
+.+++||.||+..+.+++|+..|..++.|..+.|.-.+++++.||.|+|+|.+.+++.+||+.....+.||
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh
Confidence 44688999999999999999999999999988777556678999999999999999999999876554443
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.69 E-value=0.00099 Score=57.94 Aligned_cols=72 Identities=18% Similarity=0.322 Sum_probs=58.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCC--------CCcc----cEEEEEEcCHHHHHHHhcCCC-Cc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT--------GRSK----GYGFVTFREPEAARRACADPT-PF 96 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~t--------g~sk----G~aFV~F~~~~~A~~Ai~~~~-~~ 96 (258)
..-.||+++||+.++...|+++|+.||.|-+|.+-....+ +.++ --|.|+|.+...|.++.+.+| ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5578999999999999999999999999999988766544 2222 236799999999999888866 45
Q ss_pred cCCce
Q 025068 97 IDGRR 101 (258)
Q Consensus 97 i~G~~ 101 (258)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 87764
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.61 E-value=0.00043 Score=69.10 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=62.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+...+++||++||+..+++.+|+..|..+|.|++|+|-+.+. +.---|+||.|.+.+.+-+|+.++. ..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 345678999999999999999999999999999999877643 3334599999999999999988865 34444444444
Q ss_pred ec
Q 025068 106 LA 107 (258)
Q Consensus 106 ~a 107 (258)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 44
No 117
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.58 E-value=0.043 Score=45.87 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=62.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Cc--cCC
Q 025068 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF--IDG 99 (258)
Q Consensus 23 ~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~--i~G 99 (258)
..+.......+|.|.+||.+-++.+|+++..+-|+|+..+|.+| |.+.|+|...|+.+-||..+. .. -.|
T Consensus 107 rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seG 179 (241)
T KOG0105|consen 107 RGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEG 179 (241)
T ss_pred cCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcC
Confidence 34555566778999999999999999999999999999999887 388999999999999998854 32 345
Q ss_pred ceEEEEec
Q 025068 100 RRANCNLA 107 (258)
Q Consensus 100 ~~i~V~~a 107 (258)
....+..-
T Consensus 180 e~~yirv~ 187 (241)
T KOG0105|consen 180 ETAYIRVR 187 (241)
T ss_pred cEeeEEec
Confidence 55555443
No 118
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.48 E-value=0.0082 Score=48.32 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=45.1
Q ss_pred HHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEeccCC
Q 025068 47 TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLG 110 (258)
Q Consensus 47 ~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~~ 110 (258)
+|.+.|..||++.=++++.+ --.|+|.+-+.|.+|+...+..|+|+.|+|++.++.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 57777889999888887765 358999999999999999999999999999987644
No 119
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.44 E-value=0.0079 Score=57.54 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=47.9
Q ss_pred HHHHHhcCCCEEEEEEeecCCCC---CcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 48 MRRYFEQFGEILEAVVITDKNTG---RSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 48 L~~~F~~fG~I~~v~v~~d~~tg---~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
++.-+++||.|..|+|.++-... -..|-.||+|.+.+++++|.+++. ..+.++.|.+++-.
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 44445689999999998872222 234678999999999999999976 56999999888763
No 120
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.41 E-value=0.0018 Score=60.03 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=58.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC--CccCCceEEEEeccC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRRANCNLASL 109 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~G~~i~V~~a~~ 109 (258)
++||++||...++.++|+.+|..--.-..-.++. ..||+||...+...|.+||+.++ .++.|+++.|.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999997641111111111 24799999999999999999976 348999999998876
Q ss_pred CCCCC
Q 025068 110 GRPRP 114 (258)
Q Consensus 110 ~~~~~ 114 (258)
++.+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 65543
No 121
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.41 E-value=0.0092 Score=54.06 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=59.5
Q ss_pred CCCCCcEEEEcCCC----CCCc-------HHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-
Q 025068 27 GDTTYTKVFVGGLA----WETQ-------SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT- 94 (258)
Q Consensus 27 ~~~~~~~lfVgnLp----~~~t-------e~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~- 94 (258)
-....++|.|.||= .+.+ +++|++-.++||.|.+|.|-- ....|.+-|.|.+.++|..||+.|+
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcC
Confidence 34557889999872 1233 345667788999999987643 2357899999999999999999977
Q ss_pred CccCCceEEEEecc
Q 025068 95 PFIDGRRANCNLAS 108 (258)
Q Consensus 95 ~~i~G~~i~V~~a~ 108 (258)
..|+||.|.-++-.
T Consensus 337 R~fdgRql~A~i~D 350 (382)
T KOG1548|consen 337 RWFDGRQLTASIWD 350 (382)
T ss_pred eeecceEEEEEEeC
Confidence 55999999877653
No 122
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.34 E-value=0.0013 Score=57.16 Aligned_cols=56 Identities=29% Similarity=0.419 Sum_probs=46.5
Q ss_pred cCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccCC
Q 025068 54 QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (258)
Q Consensus 54 ~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (258)
+||+|++++|-.+. .-..+|-++|.|...++|++|++.++ ..+.|++|.+++..-.
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 89999999776654 24567889999999999999999966 6699999999887533
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.34 E-value=0.005 Score=60.27 Aligned_cols=85 Identities=19% Similarity=0.104 Sum_probs=68.9
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC
Q 025068 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (258)
Q Consensus 22 ~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~-v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G 99 (258)
+..++.......|||..||..+++.++.++|.+--.|++ |.|-+.+ +++.++.|||+|..++++.+|+.... +.++-
T Consensus 425 q~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~ 503 (944)
T KOG4307|consen 425 QNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH 503 (944)
T ss_pred CCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCc
Confidence 446677777889999999999999999999999888887 5555554 68889999999999888888887755 44777
Q ss_pred ceEEEEec
Q 025068 100 RRANCNLA 107 (258)
Q Consensus 100 ~~i~V~~a 107 (258)
+.|+|...
T Consensus 504 r~irv~si 511 (944)
T KOG4307|consen 504 RIIRVDSI 511 (944)
T ss_pred eEEEeech
Confidence 77887644
No 124
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.28 E-value=0.015 Score=42.42 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=40.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (258)
.+..+|. .|.++...||.++|+.||.|. |.++.|. -|||...+.+.|..++...
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHh
Confidence 3455555 999999999999999999976 6677664 7999999999999887764
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.18 E-value=0.0069 Score=55.68 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=61.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCC---CCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~t---g~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
...|-|.||...++.+++..+|.-.|+|.++.|.-+... ....-.|||.|.|...+..|-...|.+|-++.|.|...
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 448999999999999999999999999999988664321 23445899999999999988877777766677666654
No 126
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.83 E-value=0.0068 Score=58.41 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=63.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHh-cCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc----c
Q 025068 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF----I 97 (258)
Q Consensus 23 ~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~-~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~----i 97 (258)
.+|......+.|+|.||-.-+|.-+|++++. ..|.|++. || | +-|..|||.|.+.++|.+.+..++.. -
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 4555667788999999999999999999998 46666666 32 2 23568999999999999999886632 5
Q ss_pred CCceEEEEeccC
Q 025068 98 DGRRANCNLASL 109 (258)
Q Consensus 98 ~G~~i~V~~a~~ 109 (258)
+.|.|.+.++..
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 678898888753
No 127
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.73 E-value=0.0086 Score=52.23 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=54.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
..|+|.||..-++.|.|++-|+.||.|+...++.|- .++..+-++|.|...-.+.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 689999999999999999999999999987777775 38888899999999999998888753
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.67 E-value=0.031 Score=49.79 Aligned_cols=63 Identities=17% Similarity=0.304 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCEEEEEEeecCCCCCcc-cEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 45 SETMRRYFEQFGEILEAVVITDKNTGRSK-GYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 45 e~~L~~~F~~fG~I~~v~v~~d~~tg~sk-G~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
++++++.+++||.|..|.|..++..-... ---||+|+..++|.+|+..++ ..|+|+.+...+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45788889999999999887775433332 246999999999999999977 5699988765443
No 129
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.46 E-value=0.06 Score=43.22 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=56.2
Q ss_pred CCCCCcEEEEcCCCCCCc-HHH---HHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceE
Q 025068 27 GDTTYTKVFVGGLAWETQ-SET---MRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~t-e~~---L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i 102 (258)
.+....+|.|.=|..++. .+| +...++.||.|.+|.+ .|+ --|.|.|+|..+|-+|+.+.....-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cGr--qsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CGR--QSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cCC--ceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 355667888876666543 233 4455678999999855 233 37999999999999999997777889999
Q ss_pred EEEecc
Q 025068 103 NCNLAS 108 (258)
Q Consensus 103 ~V~~a~ 108 (258)
.|+|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 999864
No 130
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.92 E-value=0.034 Score=53.38 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=58.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhc--CCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC---CccCCceE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRA 102 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~--fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i 102 (258)
..+.|.|.|..|+..+-+|+++.+|+. +-.+.+|.+-.+. -=||+|++..+|++|.+.+. ++|-||.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 356788999999999999999999964 6778888776553 24899999999999988754 56889988
Q ss_pred EEEec
Q 025068 103 NCNLA 107 (258)
Q Consensus 103 ~V~~a 107 (258)
...+.
T Consensus 245 mARIK 249 (684)
T KOG2591|consen 245 MARIK 249 (684)
T ss_pred hhhhh
Confidence 65543
No 131
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.62 E-value=0.025 Score=50.75 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...+++|++++.+++.+.++..++.+.|.+..+.+........+++++.|.|...+.+..||.... ..+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 357899999999999999999999999988888877777778999999999999999999999865 4677777766666
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
....
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 5443
No 132
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.61 E-value=0.021 Score=53.81 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=57.5
Q ss_pred CCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~-~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (258)
+.+.|-+.-.+.. -+-++|...|.+||+|..|.|-... -.|.|+|.+..+|-+|-......|+++.|+|.|-.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEec
Confidence 3444545444544 3567899999999999999885553 27899999999998777777778999999999986
Q ss_pred C
Q 025068 109 L 109 (258)
Q Consensus 109 ~ 109 (258)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 5
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.56 E-value=0.044 Score=55.29 Aligned_cols=78 Identities=29% Similarity=0.424 Sum_probs=63.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCC--ceEEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDG--RRANC 104 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G--~~i~V 104 (258)
....+.++|++|..++....|...|..||.|..|.+-. | .-|++|.+++.+.++.|+..+... |++ ++|.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 44567899999999999999999999999999987632 2 349999999999999999996533 553 77999
Q ss_pred EeccCCC
Q 025068 105 NLASLGR 111 (258)
Q Consensus 105 ~~a~~~~ 111 (258)
.++...-
T Consensus 526 dla~~~~ 532 (975)
T KOG0112|consen 526 DLASPPG 532 (975)
T ss_pred ccccCCC
Confidence 9986443
No 134
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.07 E-value=0.22 Score=44.61 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=52.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceE-EEEeccC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA-NCNLASL 109 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i-~V~~a~~ 109 (258)
+.=|-|-+++..- -..|..+|++||+|++..-. ..-.+-.|.|.++.+|+|||..++.+|+|..+ -|+....
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 3445555676653 35677889999999876433 22238899999999999999999888887654 5665544
Q ss_pred CC
Q 025068 110 GR 111 (258)
Q Consensus 110 ~~ 111 (258)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 43
No 135
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.58 E-value=0.024 Score=51.25 Aligned_cols=81 Identities=27% Similarity=0.403 Sum_probs=58.3
Q ss_pred CCcEEEEcCCCCCCcHHHH---HHHHhcCCCEEEEEEeecCC--CCC-cccEEEEEEcCHHHHHHHhcCCC-CccCCceE
Q 025068 30 TYTKVFVGGLAWETQSETM---RRYFEQFGEILEAVVITDKN--TGR-SKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L---~~~F~~fG~I~~v~v~~d~~--tg~-skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (258)
..+.+||-+|+..+.++.+ .+.|.+||.|..|.+-++.. .+. .-.-++|+|+..|+|..||...+ ..++|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4456888889887655544 35778889999988777652 111 12347999999999999999965 45788887
Q ss_pred EEEeccCC
Q 025068 103 NCNLASLG 110 (258)
Q Consensus 103 ~V~~a~~~ 110 (258)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 77776544
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.46 E-value=0.24 Score=35.12 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=37.9
Q ss_pred EEEEc-CCCCCCcHHHHHHHHhcCCC-----EEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 33 KVFVG-GLAWETQSETMRRYFEQFGE-----ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 33 ~lfVg-nLp~~~te~~L~~~F~~fG~-----I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+|||. +--+.++..+|..++..-+. |-+++|..+ |+||+-.. +.|+++++.++ ..+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45554 33456888999999987654 456776544 88998865 46778888855 66999999998
Q ss_pred ec
Q 025068 106 LA 107 (258)
Q Consensus 106 ~a 107 (258)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 137
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.06 E-value=0.31 Score=41.00 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=43.4
Q ss_pred cHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC--C-ccCCceEEEEeccC
Q 025068 44 QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--P-FIDGRRANCNLASL 109 (258)
Q Consensus 44 te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~--~-~i~G~~i~V~~a~~ 109 (258)
..+.|+++|..++.+....+++.- +-..|.|.+.++|.+|...++ . .+.|+.|+|-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999999988777653 367899999999999999976 4 49999999988843
No 138
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.92 E-value=0.11 Score=50.96 Aligned_cols=70 Identities=21% Similarity=0.213 Sum_probs=59.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
.....+|||+||...+.++-++.++..+|.|..++.+. |+|..|.+.....+|+..+. ..++++.+.++.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34566899999999999999999999999998876543 99999999999999998876 448888776655
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.86 E-value=1.8 Score=33.30 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=44.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
...+.+...+.-++.++|..+.+.+- .|+.++|++|. ...+-.++++|.+.++|++-.+..|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhC
Confidence 33444555566677777876666654 57788999984 3456688999999999999988844
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=89.15 E-value=0.57 Score=45.16 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=52.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhc----------------------------CCCEEEEEEeecCCCCCcccEEEEEE
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQ----------------------------FGEILEAVVITDKNTGRSKGYGFVTF 80 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~----------------------------fG~I~~v~v~~d~~tg~skG~aFV~F 80 (258)
....++-|+||+..-...+|.++... .|.-..+.+..|-.+....|||||.|
T Consensus 359 ~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm 438 (549)
T KOG4660|consen 359 DRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINM 438 (549)
T ss_pred cchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEee
Confidence 34455666777766666666555532 33344555666666677889999999
Q ss_pred cCHHHHHHHhcC-CCC--c-cCC-ceEEEEecc
Q 025068 81 REPEAARRACAD-PTP--F-IDG-RRANCNLAS 108 (258)
Q Consensus 81 ~~~~~A~~Ai~~-~~~--~-i~G-~~i~V~~a~ 108 (258)
.+.+++.++.++ +++ + |.+ |.+.+.+|.
T Consensus 439 ~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 439 TSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 999999988887 332 2 554 444666664
No 141
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.11 E-value=0.3 Score=40.70 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhc-CCCE---EEEEE-eecCCCCC-cccEEEEEEcCHHHHHHHhcCCC-Cc-cCCc
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQ-FGEI---LEAVV-ITDKNTGR-SKGYGFVTFREPEAARRACADPT-PF-IDGR 100 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~-fG~I---~~v~v-~~d~~tg~-skG~aFV~F~~~~~A~~Ai~~~~-~~-i~G~ 100 (258)
....+|.|++||.++||+++.+.++. ++.. ..+.- ..+..... .-.-|+|.|.+.+++..-+...+ +. ++.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999987766 5554 23321 11221222 23568999999999888887744 33 3322
Q ss_pred ----eEEEEeccC
Q 025068 101 ----RANCNLASL 109 (258)
Q Consensus 101 ----~i~V~~a~~ 109 (258)
...|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 345666653
No 142
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.64 E-value=1.6 Score=40.70 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=54.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCE-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCce
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRR 101 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I-~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~ 101 (258)
+.+-.+.|-|-+++.....++|...|+.|+.- .+|+++.|. .+|-.|++...|..||...+..|.=|.
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeee
Confidence 44566789999999999999999999998753 477888775 799999999999999987544444333
No 143
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.28 E-value=0.45 Score=48.06 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=58.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Cc--cCCceEEEEecc
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF--IDGRRANCNLAS 108 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~--i~G~~i~V~~a~ 108 (258)
+..+.|.+-..+...|..+|++||+|.+...++|-+ .+.|+|.+.+.|..|++.+. ++ +.|-+.+|.+|+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 445667777888899999999999999998888865 89999999999999999864 44 567778888884
No 144
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.21 E-value=6.5 Score=35.24 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=36.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCE-EEEEEeecCCCCCcccEEEEEEcCHH
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFREPE 84 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I-~~v~v~~d~~tg~skG~aFV~F~~~~ 84 (258)
..+-|+|+||+.++.-.+|+..+.+-+.+ .++.+ ..++|-||++|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 34569999999999999999999887643 23333 224567899997643
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.13 E-value=5.6 Score=27.69 Aligned_cols=53 Identities=13% Similarity=0.343 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 42 ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 42 ~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
.++-++|+..+.+|.- .+|+.|+ .|| ||.|.+.++|++|....+ ..+..-+|.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5678899999999963 2344454 233 899999999999998855 335544443
No 146
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=78.12 E-value=4.7 Score=28.30 Aligned_cols=60 Identities=10% Similarity=0.151 Sum_probs=42.0
Q ss_pred HHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 46 ETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 46 ~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
++|++.|.+.| .+..+..+..++++..--.-||+.....+... .++ +.|++.++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 67788888888767666777888865433222 122 45889998888653
No 147
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.65 E-value=6.3 Score=27.52 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=41.1
Q ss_pred HHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 46 ETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 46 ~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
++|++.|...| .|.++.-+..+.+...--.-||+++...+..+ ..+ +.|++..|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 56777787777 67788777777566666777888875544222 233 45888888888764
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.98 E-value=16 Score=35.83 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=56.4
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcC----CCEEEEEEeecC----------CC-----------------------
Q 025068 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQF----GEILEAVVITDK----------NT----------------------- 69 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~-~te~~L~~~F~~f----G~I~~v~v~~d~----------~t----------------------- 69 (258)
....++|-|.||.|+ +..++|.-+|..| |.|.+|.|.... ..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999997 8888999999875 689998875432 01
Q ss_pred -------------CCccc-EEEEEEcCHHHHHHHhcCCC-CccCC--ceEEEEe
Q 025068 70 -------------GRSKG-YGFVTFREPEAARRACADPT-PFIDG--RRANCNL 106 (258)
Q Consensus 70 -------------g~skG-~aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~V~~ 106 (258)
++.+. ||.|+|.+.+.|.+.-+.+. .++.. ..|.+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11232 68999999999999888865 44553 3444433
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.65 E-value=17 Score=34.61 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=50.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
.+.|+|-.+|..++-.||-.|...+- .|.+++|++|.. ..+=..+|+|.+.++|...-++.|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcC
Confidence 77899999999999999999987654 678999999743 223367999999999999988844
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.89 E-value=5.9 Score=30.70 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=28.1
Q ss_pred CcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHhcC
Q 025068 43 TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACAD 92 (258)
Q Consensus 43 ~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~-~~~~A~~Ai~~ 92 (258)
.+.++|++.|+.|..++ ++.+.++ ..+.|+++|+|. |-.-...|+..
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 35578999999998764 6666665 367899999997 44444555543
No 151
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=66.40 E-value=0.99 Score=38.88 Aligned_cols=64 Identities=28% Similarity=0.388 Sum_probs=51.4
Q ss_pred CCCCCcEEEEcC----CCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhc
Q 025068 27 GDTTYTKVFVGG----LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91 (258)
Q Consensus 27 ~~~~~~~lfVgn----Lp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~ 91 (258)
+++.-.+++.|+ |...++++.+.++|+.-+.|+.+++.++.+ ++.+-++||++.-....-.++.
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhh
Confidence 445567888998 999999999999999999999999999875 8888899998755444444443
No 152
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.26 E-value=12 Score=33.60 Aligned_cols=80 Identities=10% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCC-------CCCcccEEEEEEcCHHHHHH----HhcCCC---
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN-------TGRSKGYGFVTFREPEAARR----ACADPT--- 94 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~-------tg~skG~aFV~F~~~~~A~~----Ai~~~~--- 94 (258)
-..+.|.+.||..+++--.+..-|.+||.|++|.++.+.. ..+......+.|-+.+.+.. .++.+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999888888899999999999998761 12334567888888776543 222222
Q ss_pred CccCCceEEEEecc
Q 025068 95 PFIDGRRANCNLAS 108 (258)
Q Consensus 95 ~~i~G~~i~V~~a~ 108 (258)
..+..+.|.|++..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 34777888777665
No 153
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.49 E-value=9.4 Score=34.14 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=26.6
Q ss_pred CCCcEEEEcCCCC------------CCcHHHHHHHHhcCCCEEEEEE
Q 025068 29 TTYTKVFVGGLAW------------ETQSETMRRYFEQFGEILEAVV 63 (258)
Q Consensus 29 ~~~~~lfVgnLp~------------~~te~~L~~~F~~fG~I~~v~v 63 (258)
+...+|++.+||- --+|+.|+..|+.||+|..|+|
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 3455677766654 2467889999999999998876
No 154
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=58.27 E-value=15 Score=30.71 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=43.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHH
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAAR 87 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~ 87 (258)
........+++.+++..++++++...|..++.+....+.............++.+.....+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDAL 281 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhh
Confidence 34566789999999999999999999999999987777665543333344444443333333
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=57.32 E-value=0.99 Score=41.95 Aligned_cols=66 Identities=15% Similarity=0.035 Sum_probs=50.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccC
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~ 98 (258)
+..++|+|.+|..++..+++-++|..+|+|....+-. +...-+|-|+|........|+..++.++.
T Consensus 149 eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 149 EIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 3447899999999999999999999999987665432 22334677999888888888877665443
No 156
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=51.24 E-value=37 Score=23.31 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCEEEEEE
Q 025068 46 ETMRRYFEQFGEILEAVV 63 (258)
Q Consensus 46 ~~L~~~F~~fG~I~~v~v 63 (258)
++||++|+..|+|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999986654
No 157
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=51.24 E-value=14 Score=30.98 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=47.9
Q ss_pred CcEEEEcCCCCCCcH-----HHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCc-eEE
Q 025068 31 YTKVFVGGLAWETQS-----ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR-RAN 103 (258)
Q Consensus 31 ~~~lfVgnLp~~~te-----~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~-~i~ 103 (258)
.+++++.+|..++-. ...+.+|..+-+....++++. ++..-|.|.+.+.|..|...+. ..|.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 445777777765432 234455555544444444333 3466789999999999988866 558888 888
Q ss_pred EEeccCC
Q 025068 104 CNLASLG 110 (258)
Q Consensus 104 V~~a~~~ 110 (258)
+-++...
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 8887543
No 158
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=49.52 E-value=13 Score=22.65 Aligned_cols=17 Identities=12% Similarity=0.427 Sum_probs=10.6
Q ss_pred CCCcHHHHHHHHhcCCC
Q 025068 41 WETQSETMRRYFEQFGE 57 (258)
Q Consensus 41 ~~~te~~L~~~F~~fG~ 57 (258)
.++++++|+++|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999987643
No 159
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.47 E-value=3 Score=39.41 Aligned_cols=76 Identities=7% Similarity=-0.137 Sum_probs=57.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
.+.|+..|+...++++|.-+|..+|.|..+.+-+.-..+..+-.+||+-.. +.+..+|..+. ..+.+..++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999988765554445566678888765 44677777644 45777778777774
No 160
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=48.88 E-value=69 Score=23.31 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=39.3
Q ss_pred EEcCCCCCCcHHHHHHHHhc-CC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC
Q 025068 35 FVGGLAWETQSETMRRYFEQ-FG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (258)
Q Consensus 35 fVgnLp~~~te~~L~~~F~~-fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (258)
|+-.++.+.+..+|++.+++ |+ .|.+|..+.-+. +. -=|+|++..-++|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cc--EEEEEEeCCCCcHHHHHHhh
Confidence 33346889999999999988 55 566776555442 22 24899999888888765543
No 161
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=48.23 E-value=21 Score=26.26 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=24.1
Q ss_pred EEEEEcCHHHHHHHhcCCCC--ccCCceEEEEec
Q 025068 76 GFVTFREPEAARRACADPTP--FIDGRRANCNLA 107 (258)
Q Consensus 76 aFV~F~~~~~A~~Ai~~~~~--~i~G~~i~V~~a 107 (258)
|+|+|.+.+.|++.|+...+ .+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 68999999999999988543 367766666543
No 162
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=46.19 E-value=2.1e+02 Score=28.64 Aligned_cols=69 Identities=10% Similarity=0.010 Sum_probs=48.8
Q ss_pred cEEEEc-CCCCCCcHHHHHHHHhcCCCEE-----EEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 32 TKVFVG-GLAWETQSETMRRYFEQFGEIL-----EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 32 ~~lfVg-nLp~~~te~~L~~~F~~fG~I~-----~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
.++||. +-...++..+|..++..-+.|. .|+|..+ |.||+... +.+.+.++.+. ..+.|++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 456664 3456788889988887766554 4555433 88999864 45777777765 5699999999
Q ss_pred EeccC
Q 025068 105 NLASL 109 (258)
Q Consensus 105 ~~a~~ 109 (258)
+.+..
T Consensus 558 ~~~~~ 562 (629)
T PRK11634 558 QLLGD 562 (629)
T ss_pred EECCC
Confidence 98853
No 163
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=45.85 E-value=83 Score=20.51 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=40.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCH----HHHHHHhcCC
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP----EAARRACADP 93 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~----~~A~~Ai~~~ 93 (258)
+|.|.||.-.-....|++.+.+.-.|.++.+-... +-.-|+|... ++..++|+..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 46777887777888999999999889988875543 3667777633 5666666554
No 164
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=43.41 E-value=1e+02 Score=21.97 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=38.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-CC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC
Q 025068 34 VFVGGLAWETQSETMRRYFEQ-FG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (258)
Q Consensus 34 lfVgnLp~~~te~~L~~~F~~-fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (258)
-|+-.++.+.+..+|++.++. |+ .|.+|..+.-+. +. -=|||++..-+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~--KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GE--KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHHh
Confidence 344457889999999999987 55 556665554432 21 2489999888877765544
No 165
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.75 E-value=14 Score=27.24 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHH
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYF 52 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F 52 (258)
...++|.|.|||...+|++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 456789999999999999998743
No 166
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=42.48 E-value=97 Score=24.19 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=28.9
Q ss_pred CCcHHHHHHHHhcCCC-----EEEEEEeecCCCCCcccEEEEEEcCHHHHHH
Q 025068 42 ETQSETMRRYFEQFGE-----ILEAVVITDKNTGRSKGYGFVTFREPEAARR 88 (258)
Q Consensus 42 ~~te~~L~~~F~~fG~-----I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~ 88 (258)
+++.+||++-+++.=. |.-..+-+.-.+|++.|||.| |++.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5788888888776322 222233344456888899976 666666554
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.73 E-value=26 Score=31.52 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=22.9
Q ss_pred EEEEEcCHHHHHHHhcCCCCccCCceEEEEecc
Q 025068 76 GFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (258)
Q Consensus 76 aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (258)
|||+|++.++|+.|++.... .+.+.++|+.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCC
Confidence 69999999999999986321 223555676663
No 168
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.30 E-value=14 Score=34.64 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=48.8
Q ss_pred CcEEEEcCCCCCCcHH--------HHHHHHhc--CCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhc
Q 025068 31 YTKVFVGGLAWETQSE--------TMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~--------~L~~~F~~--fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~ 91 (258)
-+.+|+.+...+.+.+ +|...|.. .+.+..+..-+|.....++|..|++|+..+.+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567777777766555 89999988 6677777777776667888999999999999999994
No 169
>PRK11901 hypothetical protein; Reviewed
Probab=37.17 E-value=62 Score=29.63 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=37.6
Q ss_pred CCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEE--EEcCHHHHHHHhcCCCCcc
Q 025068 41 WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV--TFREPEAARRACADPTPFI 97 (258)
Q Consensus 41 ~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV--~F~~~~~A~~Ai~~~~~~i 97 (258)
-..+++.|++|..+.+ +..+.|.+...+|+. .|..| .|.+.++|.+||+.|-..|
T Consensus 252 Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 252 SASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred cCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3456888988888775 455666554433443 45443 6899999999999986544
No 170
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=36.68 E-value=2.8 Score=39.47 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=60.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEE-eecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVV-ITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v-~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
...+++-|.|++....++.|..++..||.++.|.+ .+|..| -..-|++.+.+.+..||..++ ..+....++|.+
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 35677899999999999999999999999998854 344322 233478889999999999976 558888888887
Q ss_pred cc
Q 025068 107 AS 108 (258)
Q Consensus 107 a~ 108 (258)
--
T Consensus 154 iP 155 (584)
T KOG2193|consen 154 IP 155 (584)
T ss_pred Cc
Confidence 63
No 171
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=35.95 E-value=67 Score=24.12 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=31.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE 82 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (258)
-..-|||++++..+.|.-.+.+-+.+++- ++.++.. .+ ...||.|-++.+
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~-~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWA-TN-TESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEc-CC-CCCCcEEEecCC
Confidence 34569999999988876655555555442 2333332 22 334999998765
No 172
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=35.87 E-value=85 Score=22.97 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~ 81 (258)
-..-|||++++..+.|.-.+.+.+..++-. +.++... ....||.|-+.-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~--~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSD--NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEcc--CCCCCEEEEEeC
Confidence 345699999999998776666666544333 3333332 226789998874
No 173
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=35.57 E-value=45 Score=23.03 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=24.9
Q ss_pred CcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEE
Q 025068 43 TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 78 (258)
Q Consensus 43 ~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV 78 (258)
.-|.+|++.|-+--+|+++.|...| ...+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKK--ri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKK--RIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEE--eeeCCceeE
Confidence 3456788888888899999888775 344566666
No 174
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=35.45 E-value=92 Score=23.43 Aligned_cols=46 Identities=28% Similarity=0.483 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHhc-CCCEEEEEEeecCC----CCCcccEEEEEEcCHHHHHH
Q 025068 42 ETQSETMRRYFEQ-FGEILEAVVITDKN----TGRSKGYGFVTFREPEAARR 88 (258)
Q Consensus 42 ~~te~~L~~~F~~-fG~I~~v~v~~d~~----tg~skG~aFV~F~~~~~A~~ 88 (258)
..+..+|++-+.+ ++.=.++.|+..-. .+++.|||.| |+|.+.+.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 5677888777754 44322343443322 3566677655 556555443
No 175
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=33.25 E-value=4.6 Score=27.07 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=19.4
Q ss_pred cccEEEEEEcC-HHHHHHHhcCCCCccCCceEEEEecc
Q 025068 72 SKGYGFVTFRE-PEAARRACADPTPFIDGRRANCNLAS 108 (258)
Q Consensus 72 skG~aFV~F~~-~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (258)
.+|||||.-.+ .++.--.-..++..++|-++.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999887 11111111223455778888887765
No 176
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=33.22 E-value=55 Score=27.51 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=36.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcC-CCEEEEEEeecCCCC--CcccEEEEEEcCHHHHHHHhcCC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTG--RSKGYGFVTFREPEAARRACADP 93 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~f-G~I~~v~v~~d~~tg--~skG~aFV~F~~~~~A~~Ai~~~ 93 (258)
.+++|.. +|+++|.++..-- |.+..+..-+.. .+ ..+|--||+|.+.+.|.++++..
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 3455554 4555554444321 566666543332 23 56789999999999999988774
No 177
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=32.64 E-value=4.8 Score=39.11 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=44.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEc---CHHHHHHHhc
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR---EPEAARRACA 91 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~---~~~~A~~Ai~ 91 (258)
...|+|||.|+..+++-++|..+++.+-...++.+-.+..-.+.+-++.|+|+ +..+|.-||.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 56789999999999999999999998876666655444322344567888886 4444444443
No 178
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=31.97 E-value=91 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.0
Q ss_pred CEEEEEEeecCCCCCcccEEEEEEcC
Q 025068 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (258)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (258)
+|++|+|-.-...++-|++|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788887766668999999999987
No 179
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.80 E-value=2.9e+02 Score=22.54 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=37.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcC---CCEEEEEEeecCCC---------CCccc-EEEEEEcCHHH
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQF---GEILEAVVITDKNT---------GRSKG-YGFVTFREPEA 85 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~f---G~I~~v~v~~d~~t---------g~skG-~aFV~F~~~~~ 85 (258)
.+|++.-+..-++|++.++..++- ++|.+|.+-+.+++ ...+. |-+|.|++-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 789999999999999999999875 45666655443311 11233 77888876544
No 180
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=27.97 E-value=88 Score=24.07 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEE
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVV 63 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v 63 (258)
..+++| +...+|+++|++.|.+|-.-.++.|
T Consensus 35 ~~Nf~v--v~~~Tt~~eiedaF~~f~~RdDIaI 65 (121)
T KOG3432|consen 35 EPNFLV--VDSKTTVEEIEDAFKSFTARDDIAI 65 (121)
T ss_pred CCCEEE--EeccCCHHHHHHHHHhhccccCeEE
Confidence 344554 4568999999999999966444443
No 181
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.24 E-value=57 Score=19.67 Aligned_cols=18 Identities=6% Similarity=0.244 Sum_probs=15.2
Q ss_pred CCcHHHHHHHHhcCCCEE
Q 025068 42 ETQSETMRRYFEQFGEIL 59 (258)
Q Consensus 42 ~~te~~L~~~F~~fG~I~ 59 (258)
.+++++|++++.++|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578999999999998654
No 182
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=27.16 E-value=24 Score=31.25 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=57.0
Q ss_pred CCCcEEEEcCCCCCCcHHH-H--HHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 29 TTYTKVFVGGLAWETQSET-M--RRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~-L--~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
.....+|++++-..+..+- | ...|+.+-.+...++++++. +..++++|+.|+..+...++-.+.+ +.+....|++
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 4556778888877766655 4 77888888888888888874 7888999999998887777766644 4455555555
Q ss_pred Eecc
Q 025068 105 NLAS 108 (258)
Q Consensus 105 ~~a~ 108 (258)
.-++
T Consensus 173 a~gt 176 (290)
T KOG0226|consen 173 AAGT 176 (290)
T ss_pred cccc
Confidence 4443
No 183
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=26.42 E-value=9.1 Score=26.71 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=23.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcC
Q 025068 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQF 55 (258)
Q Consensus 23 ~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~f 55 (258)
...+-....++||||.+|..+-+++=+.++...
T Consensus 19 Sp~~Ls~tSr~vflG~IP~~W~~~~~~~~~k~~ 51 (67)
T PF15407_consen 19 SPEELSLTSRRVFLGPIPEIWLQDHRKSWYKSL 51 (67)
T ss_pred CHHHHHHcCceEEECCCChHHHHcCcchHHHHH
Confidence 333345678999999999988887766655543
No 184
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=25.99 E-value=91 Score=29.60 Aligned_cols=41 Identities=15% Similarity=0.438 Sum_probs=31.4
Q ss_pred CCCCCCCcEEEEcCCCCC-CcHHHHHHHHhcC----CCEEEEEEee
Q 025068 25 PFGDTTYTKVFVGGLAWE-TQSETMRRYFEQF----GEILEAVVIT 65 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~-~te~~L~~~F~~f----G~I~~v~v~~ 65 (258)
|++....++|-|-||+|+ +...+|..+|+.| |.|..|.|..
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 444556778999999997 8888999999875 5777777643
No 185
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.72 E-value=1.2e+02 Score=29.50 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=43.3
Q ss_pred EEcCCCCCCc---HHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceE
Q 025068 35 FVGGLAWETQ---SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (258)
Q Consensus 35 fVgnLp~~~t---e~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i 102 (258)
+||||..-.. ...|.++=++||.|-.+++-.. -.|..++.+.|+.|+...+..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 5777765433 3456666678999998877332 368889999999999998777777764
No 186
>PHA01632 hypothetical protein
Probab=25.53 E-value=70 Score=21.48 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=15.3
Q ss_pred cCCCCCCcHHHHHHHHhc
Q 025068 37 GGLAWETQSETMRRYFEQ 54 (258)
Q Consensus 37 gnLp~~~te~~L~~~F~~ 54 (258)
..+|..-||++|++++.+
T Consensus 22 eqvp~kpteeelrkvlpk 39 (64)
T PHA01632 22 EQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhcCCCCCHHHHHHHHHH
Confidence 478999999999998865
No 187
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=25.41 E-value=62 Score=23.79 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC-CCEEEEEEeecCCCCCcccEEEEEEcC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFRE 82 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~f-G~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (258)
-..-|||++++..+.|.-.+.+-+.+ ++- .+.++.. +....||.|-++.+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 34569999999988766544444442 221 2333333 23355798887764
No 188
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=25.37 E-value=1.2e+02 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred CEEEEEEeecCCCCCcccEEEEEEcC
Q 025068 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (258)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (258)
+|++|+|-.-...|+-|++|=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47777765554458889999999987
No 189
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.80 E-value=1.3e+02 Score=21.54 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.5
Q ss_pred CcccEEEEEEcCHHHHHHHhcCCCC
Q 025068 71 RSKGYGFVTFREPEAARRACADPTP 95 (258)
Q Consensus 71 ~skG~aFV~F~~~~~A~~Ai~~~~~ 95 (258)
..|||-||+=.+.+++.+||....+
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCceEEEEEeCCHHHHHHHHhcccc
Confidence 3689999999999999999998654
No 190
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=24.24 E-value=1.6e+02 Score=23.41 Aligned_cols=45 Identities=11% Similarity=0.395 Sum_probs=24.9
Q ss_pred CCcHHHHHHHHhc-CC-CEEEEEEeec----CCCCCcccEEEEEEcCHHHHH
Q 025068 42 ETQSETMRRYFEQ-FG-EILEAVVITD----KNTGRSKGYGFVTFREPEAAR 87 (258)
Q Consensus 42 ~~te~~L~~~F~~-fG-~I~~v~v~~d----~~tg~skG~aFV~F~~~~~A~ 87 (258)
..+.++|++-+.+ |. .=.++.|+.. -..+++.|||.| |+|.|.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 5778888888865 44 1123333332 223566677765 55555444
No 191
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=23.03 E-value=59 Score=25.44 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=43.7
Q ss_pred cEEEEcCCC--CCCcHHHHHHHHhcC-CCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEecc
Q 025068 32 TKVFVGGLA--WETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (258)
Q Consensus 32 ~~lfVgnLp--~~~te~~L~~~F~~f-G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (258)
+...|+.+- .+++-+.|.+.+.+. +....+++..- ..++..+.|.+.+++.+++......+++..|.++.-+
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 345555552 345666666666552 22112332221 2358899999999999999886666777777665443
No 192
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=22.48 E-value=1.9e+02 Score=23.39 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=41.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHH
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~A 89 (258)
.-.-+||+|.-+..--++--+++|+.|- .|.++.+.++....+-+....+...+..+.++.
T Consensus 85 ~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 85 RFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 3345789998776666777799999986 577887777653335555666666655555544
No 193
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=21.94 E-value=3.9e+02 Score=20.88 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=42.1
Q ss_pred EEEEcCCCCC---CcHHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccC-CceEEEEec
Q 025068 33 KVFVGGLAWE---TQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID-GRRANCNLA 107 (258)
Q Consensus 33 ~lfVgnLp~~---~te~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~-G~~i~V~~a 107 (258)
.|-|...... .+-+.+++.+++-| .++++....+ -..|.|++.|+..+|.+.+...+. +-.|.++++
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4555544222 56678888888877 3444443222 578999999998888877655543 345555554
No 194
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=21.75 E-value=3e+02 Score=19.50 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=40.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccC
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~ 98 (258)
+|+|.|-|-- -+.+-.+|+.-| .|+++.+-.....+.+| +-++...+.+..+..++++++.++
T Consensus 6 si~v~n~pGV--L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KLid 69 (76)
T PRK06737 6 SLVIHNDPSV--LLRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKLIN 69 (76)
T ss_pred EEEEecCCCH--HHHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCCcC
Confidence 4555555443 246778888877 67877665433223333 556667888888888888776554
No 195
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=21.62 E-value=2e+02 Score=24.37 Aligned_cols=45 Identities=29% Similarity=0.365 Sum_probs=29.4
Q ss_pred cHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC
Q 025068 44 QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (258)
Q Consensus 44 te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (258)
+.++.+++++.++.-. +.|..| |...|-+.+...+.++|.++|.+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~ 69 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALRE 69 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHH
Confidence 5677778787765422 233333 44444455666999999999987
No 196
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=21.43 E-value=3.3e+02 Score=19.77 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC
Q 025068 45 SETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (258)
Q Consensus 45 e~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (258)
.+.+++++++.| +++++.+.. |.-=-...+++.|.+.|.++.-.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHH
Confidence 456788888775 677777764 44445678889998888776544
No 197
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=20.94 E-value=3.1e+02 Score=19.33 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=37.5
Q ss_pred EEcCCCCCCcHHHHHHHH-------hcCCCEEEEEEeecCCCCC-ccc--EE-EEEEcCHHHHHHHhcC
Q 025068 35 FVGGLAWETQSETMRRYF-------EQFGEILEAVVITDKNTGR-SKG--YG-FVTFREPEAARRACAD 92 (258)
Q Consensus 35 fVgnLp~~~te~~L~~~F-------~~fG~I~~v~v~~d~~tg~-skG--~a-FV~F~~~~~A~~Ai~~ 92 (258)
.+-.|..+++++++++++ .+...|+++.+-++..... .++ ++ +++|.|.++.+.-...
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~h 73 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQTH 73 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHTS
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHcC
Confidence 333577888888875554 3456788888777654332 244 44 5689998887766554
No 198
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.31 E-value=2.7e+02 Score=18.34 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 45 SETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 45 e~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
-.+|-++|.+.| .|+.+.+.... . ++.--+.+++.+.+.++|++.+
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G 61 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAG 61 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCC
Confidence 356677777766 67777654432 2 4666666788888888887754
No 199
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=20.25 E-value=81 Score=31.59 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (258)
.+....+||+.+-...-...-|..++..++.++..+++.....+....-++++|.-...+..|....+..+..+.+++
T Consensus 507 rk~s~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 507 RKASQPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKCLKS 584 (681)
T ss_pred cccCCCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhccccccccccceec
Confidence 334444788888888888888889999999999988888877777667889999988888777665555455444443
Done!