Query 025068
Match_columns 258
No_of_seqs 342 out of 1903
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 03:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqd_A RNA-binding region cont 99.9 1.6E-21 5.5E-26 150.0 15.5 88 24-111 10-97 (116)
2 2cpz_A CUG triplet repeat RNA- 99.9 1.2E-21 4.2E-26 150.4 11.6 91 23-113 17-108 (115)
3 4fxv_A ELAV-like protein 1; RN 99.9 2.4E-21 8.2E-26 145.7 10.3 79 30-108 18-97 (99)
4 3s8s_A Histone-lysine N-methyl 99.8 1.4E-21 4.9E-26 149.7 8.4 84 29-112 4-88 (110)
5 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-20 6.6E-25 143.6 14.5 88 27-114 11-99 (115)
6 2rs2_A Musashi-1, RNA-binding 99.8 5E-21 1.7E-25 146.2 10.4 88 26-113 20-107 (109)
7 2do4_A Squamous cell carcinoma 99.8 1.4E-20 4.8E-25 140.8 12.2 86 25-111 11-97 (100)
8 2dgs_A DAZ-associated protein 99.8 1.8E-20 6.3E-25 140.0 12.8 87 27-113 6-92 (99)
9 2kxn_B Transformer-2 protein h 99.8 4.7E-21 1.6E-25 150.9 10.0 92 21-112 36-128 (129)
10 3s7r_A Heterogeneous nuclear r 99.8 9.8E-21 3.3E-25 138.1 10.8 82 26-107 6-87 (87)
11 2lxi_A RNA-binding protein 10; 99.8 1.5E-21 5.2E-26 144.4 6.3 81 31-111 1-84 (91)
12 2dnm_A SRP46 splicing factor; 99.8 1.2E-20 4.2E-25 141.9 10.5 89 25-113 7-96 (103)
13 1x4b_A Heterogeneous nuclear r 99.8 4.6E-20 1.6E-24 141.8 13.6 85 28-112 24-108 (116)
14 2lkz_A RNA-binding protein 5; 99.8 2.4E-21 8.2E-26 144.8 5.9 84 26-109 4-94 (95)
15 1x5u_A Splicing factor 3B subu 99.8 4.1E-20 1.4E-24 139.4 12.7 86 27-112 11-97 (105)
16 2dh8_A DAZ-associated protein 99.8 1.4E-20 4.7E-25 142.1 9.7 87 26-112 11-97 (105)
17 2cq0_A Eukaryotic translation 99.8 2.9E-20 9.9E-25 139.9 11.3 86 27-112 11-97 (103)
18 2cqg_A TDP-43, TAR DNA-binding 99.8 6.1E-20 2.1E-24 138.1 13.1 87 25-112 9-95 (103)
19 1x4a_A Splicing factor, argini 99.8 4.5E-20 1.5E-24 140.3 12.4 85 24-111 15-100 (109)
20 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.4E-20 8.4E-25 150.7 11.5 85 28-112 36-121 (156)
21 1x4h_A RNA-binding protein 28; 99.8 4.1E-20 1.4E-24 140.6 11.9 88 26-113 10-104 (111)
22 1u6f_A Tcubp1, RNA-binding pro 99.8 4.9E-20 1.7E-24 145.9 12.7 87 27-113 38-125 (139)
23 2dng_A Eukaryotic translation 99.8 9.3E-20 3.2E-24 137.2 13.5 87 25-112 9-95 (103)
24 2lea_A Serine/arginine-rich sp 99.8 1.4E-20 4.7E-25 149.3 9.1 93 22-114 38-131 (135)
25 2m2b_A RNA-binding protein 10; 99.8 1E-20 3.6E-25 148.8 8.2 89 24-113 16-111 (131)
26 1whw_A Hypothetical protein ri 99.8 7.1E-20 2.4E-24 136.6 12.3 85 28-112 5-90 (99)
27 2cph_A RNA binding motif prote 99.8 6.2E-20 2.1E-24 138.7 11.6 88 26-113 10-100 (107)
28 2khc_A Testis-specific RNP-typ 99.8 3.8E-20 1.3E-24 142.5 10.5 84 24-107 33-117 (118)
29 1wi8_A EIF-4B, eukaryotic tran 99.8 7E-20 2.4E-24 138.1 11.8 87 25-112 9-96 (104)
30 2dnz_A Probable RNA-binding pr 99.8 1E-19 3.5E-24 134.6 12.4 83 29-111 3-86 (95)
31 2fy1_A RNA-binding motif prote 99.8 7E-20 2.4E-24 141.4 12.0 85 27-112 3-88 (116)
32 1wel_A RNA-binding protein 12; 99.8 1.5E-20 5.2E-25 146.5 8.0 89 22-110 16-104 (124)
33 2dnh_A Bruno-like 5, RNA bindi 99.8 1.1E-19 3.8E-24 137.0 12.3 85 28-113 12-100 (105)
34 4f25_A Polyadenylate-binding p 99.8 2.9E-20 9.8E-25 143.2 9.2 82 31-114 5-87 (115)
35 1x5t_A Splicing factor 3B subu 99.8 5.2E-20 1.8E-24 136.5 10.2 84 30-113 4-89 (96)
36 2d9p_A Polyadenylate-binding p 99.8 1.3E-19 4.4E-24 136.3 12.2 86 27-114 11-97 (103)
37 2cqc_A Arginine/serine-rich sp 99.8 8.4E-20 2.9E-24 135.0 10.7 83 27-109 11-94 (95)
38 2cq4_A RNA binding motif prote 99.8 3.4E-20 1.2E-24 142.1 8.8 84 27-111 21-105 (114)
39 2dhg_A TRNA selenocysteine ass 99.8 9.1E-20 3.1E-24 137.2 11.0 86 27-113 5-93 (104)
40 1p27_B RNA-binding protein 8A; 99.8 9.3E-20 3.2E-24 137.6 11.1 87 26-112 18-105 (106)
41 2dgp_A Bruno-like 4, RNA bindi 99.8 8.3E-20 2.8E-24 137.9 10.7 86 27-112 9-98 (106)
42 2e5h_A Zinc finger CCHC-type a 99.8 9.5E-20 3.2E-24 134.5 10.7 81 28-108 13-94 (94)
43 1x5s_A Cold-inducible RNA-bind 99.8 9.6E-20 3.3E-24 136.6 10.5 85 28-112 9-94 (102)
44 3p5t_L Cleavage and polyadenyl 99.8 1.3E-20 4.4E-25 138.7 5.6 81 32-112 2-85 (90)
45 2do0_A HnRNP M, heterogeneous 99.8 3.3E-19 1.1E-23 136.3 13.6 86 27-113 11-97 (114)
46 3md1_A Nuclear and cytoplasmic 99.8 1.3E-19 4.3E-24 130.7 10.6 79 32-110 2-81 (83)
47 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.1E-20 2.8E-24 132.9 9.7 82 29-110 4-86 (87)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.9E-20 1.7E-24 138.2 8.7 85 29-113 10-95 (102)
49 2cpf_A RNA binding motif prote 99.8 9.1E-20 3.1E-24 135.8 9.9 84 29-112 3-90 (98)
50 2div_A TRNA selenocysteine ass 99.8 1.5E-19 5E-24 134.9 10.6 82 29-110 7-94 (99)
51 2cpy_A RNA-binding protein 12; 99.8 2.1E-20 7.2E-25 143.6 6.1 83 28-111 12-95 (114)
52 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.8E-19 9.4E-24 134.5 12.1 86 26-113 10-96 (103)
53 1oo0_B CG8781-PA, drosophila Y 99.8 1E-19 3.5E-24 138.4 9.8 89 25-113 20-109 (110)
54 2cpe_A RNA-binding protein EWS 99.8 8.1E-20 2.8E-24 139.7 9.1 88 25-112 9-105 (113)
55 1wg5_A Heterogeneous nuclear r 99.8 3.7E-19 1.3E-23 134.4 12.7 83 28-111 12-95 (104)
56 3ex7_B RNA-binding protein 8A; 99.8 1.1E-19 3.6E-24 141.6 9.8 90 25-114 16-106 (126)
57 3ucg_A Polyadenylate-binding p 99.8 2.2E-19 7.4E-24 131.2 10.8 81 30-110 5-85 (89)
58 2cqp_A RNA-binding protein 12; 99.8 7.3E-20 2.5E-24 136.3 8.3 83 27-109 11-94 (98)
59 1x5o_A RNA binding motif, sing 99.8 3.9E-19 1.3E-23 136.0 12.2 92 17-109 11-111 (114)
60 2cq3_A RNA-binding protein 9; 99.8 6.2E-19 2.1E-23 132.5 13.1 86 26-113 10-96 (103)
61 2dis_A Unnamed protein product 99.8 4E-19 1.4E-23 134.8 12.1 84 30-113 7-95 (109)
62 2ywk_A Putative RNA-binding pr 99.8 1.3E-19 4.3E-24 134.1 9.0 84 25-109 10-94 (95)
63 1p1t_A Cleavage stimulation fa 99.8 4.3E-20 1.5E-24 138.9 6.6 88 25-112 2-90 (104)
64 1s79_A Lupus LA protein; RRM, 99.8 1.9E-19 6.5E-24 136.3 10.1 82 27-109 7-88 (103)
65 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.7E-19 5.6E-24 130.7 9.3 81 28-108 4-85 (85)
66 3n9u_C Cleavage and polyadenyl 99.8 1E-19 3.6E-24 147.8 9.2 82 29-110 53-137 (156)
67 1sjq_A Polypyrimidine tract-bi 99.8 7.9E-20 2.7E-24 138.9 7.9 79 28-112 13-94 (105)
68 2jrs_A RNA-binding protein 39; 99.8 2.8E-19 9.4E-24 136.3 10.9 88 23-110 18-106 (108)
69 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.7E-20 2E-24 130.7 6.7 76 32-107 1-76 (77)
70 2la6_A RNA-binding protein FUS 99.8 3.3E-19 1.1E-23 133.2 10.9 83 26-108 8-99 (99)
71 3ns6_A Eukaryotic translation 99.8 6.6E-20 2.3E-24 137.7 6.7 82 28-109 3-92 (100)
72 2x1f_A MRNA 3'-END-processing 99.8 2.7E-19 9.4E-24 132.9 9.9 81 31-111 2-83 (96)
73 1wez_A HnRNP H', FTP-3, hetero 99.8 4.6E-19 1.6E-23 133.9 11.0 81 28-110 12-92 (102)
74 2mss_A Protein (musashi1); RNA 99.8 1.3E-19 4.6E-24 128.3 7.5 75 33-107 1-75 (75)
75 2db1_A Heterogeneous nuclear r 99.8 2.1E-19 7.1E-24 139.1 9.0 83 27-110 13-98 (118)
76 4a8x_A RNA-binding protein wit 99.8 2.2E-19 7.5E-24 130.7 8.6 83 30-112 3-87 (88)
77 2ek1_A RNA-binding protein 12; 99.8 5.3E-20 1.8E-24 136.2 5.2 81 29-109 13-94 (95)
78 1x4c_A Splicing factor, argini 99.8 1E-18 3.5E-23 132.9 12.3 80 27-113 11-96 (108)
79 3ulh_A THO complex subunit 4; 99.8 3.5E-19 1.2E-23 134.7 9.7 83 25-108 23-106 (107)
80 2dgv_A HnRNP M, heterogeneous 99.8 7E-19 2.4E-23 129.3 10.9 83 27-111 4-87 (92)
81 2kn4_A Immunoglobulin G-bindin 99.8 7.6E-19 2.6E-23 141.8 11.7 88 27-114 66-154 (158)
82 1iqt_A AUF1, heterogeneous nuc 99.8 1.1E-19 3.8E-24 128.7 5.8 75 33-107 1-75 (75)
83 2jwn_A Embryonic polyadenylate 99.8 7.6E-19 2.6E-23 136.4 10.9 82 29-110 34-115 (124)
84 3q2s_C Cleavage and polyadenyl 99.8 5.8E-19 2E-23 151.9 10.6 81 30-110 67-150 (229)
85 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.5E-19 8.5E-24 134.4 7.1 84 26-110 14-98 (100)
86 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.1E-18 3.9E-23 137.6 11.2 81 27-107 59-140 (140)
87 2dgw_A Probable RNA-binding pr 99.8 1.4E-18 4.8E-23 127.7 10.5 80 28-110 7-87 (91)
88 1x4e_A RNA binding motif, sing 99.8 1.2E-19 4.3E-24 131.6 4.7 79 29-107 3-82 (85)
89 2dgx_A KIAA0430 protein; RRM d 99.8 9.8E-19 3.4E-23 130.1 9.7 78 30-110 8-90 (96)
90 1why_A Hypothetical protein ri 99.8 1.7E-18 5.9E-23 128.8 11.0 78 28-111 14-94 (97)
91 2kt5_A RNA and export factor-b 99.8 3.7E-18 1.2E-22 132.7 13.2 85 27-112 31-116 (124)
92 2xs2_A Deleted in azoospermia- 99.8 4.2E-19 1.4E-23 133.2 7.6 85 25-111 3-87 (102)
93 2hgm_A HNRPF protein, heteroge 99.8 3.7E-19 1.3E-23 139.6 7.2 81 27-109 38-120 (126)
94 2fc9_A NCL protein; structure 99.8 2E-18 6.7E-23 129.3 10.8 81 27-111 11-92 (101)
95 2dnn_A RNA-binding protein 12; 99.8 7.3E-19 2.5E-23 134.5 8.6 80 28-109 13-92 (109)
96 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1E-18 3.5E-23 142.6 9.9 91 25-115 66-157 (165)
97 2ki2_A SS-DNA binding protein 99.8 1.9E-19 6.4E-24 132.0 4.7 79 32-111 2-81 (90)
98 2cq1_A PTB-like protein L; RRM 99.8 2.4E-18 8.3E-23 129.9 10.7 80 27-112 11-93 (101)
99 2cpi_A CCR4-NOT transcription 99.8 6.2E-19 2.1E-23 134.8 7.4 84 28-111 12-102 (111)
100 1fj7_A Nucleolin RBD1, protein 99.8 1.8E-19 6.2E-24 135.0 4.2 83 28-112 14-97 (101)
101 1wex_A Hypothetical protein (r 99.8 4.5E-18 1.6E-22 129.0 11.8 79 28-112 12-93 (104)
102 2dgu_A Heterogeneous nuclear r 99.8 3.3E-18 1.1E-22 128.7 10.9 80 28-115 8-88 (103)
103 2ad9_A Polypyrimidine tract-bi 99.8 1.9E-18 6.4E-23 134.2 9.8 81 27-113 27-110 (119)
104 2err_A Ataxin-2-binding protei 99.8 1.2E-18 4E-23 132.9 8.4 85 24-110 22-107 (109)
105 2hvz_A Splicing factor, argini 99.8 1.7E-18 5.9E-23 129.6 9.2 75 32-111 1-76 (101)
106 1x4d_A Matrin 3; structural ge 99.8 1.4E-18 4.7E-23 131.5 8.5 75 30-110 14-92 (102)
107 2e5j_A Methenyltetrahydrofolat 99.8 2.7E-18 9.3E-23 127.8 9.8 81 26-111 14-95 (97)
108 2fc8_A NCL protein; structure 99.8 2.5E-18 8.6E-23 128.8 9.5 82 27-111 11-93 (102)
109 2hgl_A HNRPF protein, heteroge 99.8 9.8E-19 3.4E-23 139.0 7.3 83 27-110 40-125 (136)
110 3r27_A HnRNP L, heterogeneous 99.8 2.4E-18 8.2E-23 129.6 8.6 79 26-110 16-97 (100)
111 2cpx_A Hypothetical protein FL 99.8 1.7E-18 5.7E-23 132.6 7.7 88 27-114 21-109 (115)
112 1x4f_A Matrin 3; structural ge 99.7 2.6E-18 8.7E-23 132.1 8.6 79 27-111 21-103 (112)
113 2hgn_A Heterogeneous nuclear r 99.7 6.3E-19 2.2E-23 140.6 5.3 84 26-111 41-124 (139)
114 2nlw_A Eukaryotic translation 99.7 5.3E-18 1.8E-22 128.3 9.8 81 27-109 11-99 (105)
115 2dha_A FLJ20171 protein; RRM d 99.7 5.6E-19 1.9E-23 138.1 4.3 82 28-110 20-105 (123)
116 2dnq_A RNA-binding protein 4B; 99.7 1.5E-17 5.2E-22 121.9 11.7 77 28-112 5-82 (90)
117 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-18 5.9E-23 131.4 6.6 83 27-110 7-92 (107)
118 1wf1_A RNA-binding protein RAL 99.7 7.1E-18 2.4E-22 128.4 10.0 76 28-111 24-101 (110)
119 2ytc_A PRE-mRNA-splicing facto 99.7 1.1E-17 3.9E-22 121.0 10.4 78 25-108 6-85 (85)
120 1l3k_A Heterogeneous nuclear r 99.7 8.4E-18 2.9E-22 139.0 10.9 88 24-111 6-93 (196)
121 2lcw_A RNA-binding protein FUS 99.6 1.4E-19 4.7E-24 139.2 0.0 85 27-111 3-96 (116)
122 2krb_A Eukaryotic translation 99.7 4.2E-18 1.4E-22 122.6 7.7 73 31-105 1-81 (81)
123 2jvo_A Nucleolar protein 3; nu 99.7 5.1E-18 1.8E-22 129.3 8.5 83 22-112 22-105 (108)
124 1l3k_A Heterogeneous nuclear r 99.7 1.2E-17 4E-22 138.2 11.0 87 28-114 101-187 (196)
125 1x4g_A Nucleolysin TIAR; struc 99.7 9.9E-18 3.4E-22 127.3 9.6 79 27-111 21-100 (109)
126 2cpj_A Non-POU domain-containi 99.7 1.4E-17 4.7E-22 124.3 10.0 77 28-110 12-89 (99)
127 2a3j_A U1 small nuclear ribonu 99.7 1.4E-17 4.9E-22 130.7 10.1 81 28-111 26-111 (127)
128 2dgt_A RNA-binding protein 30; 99.7 1.8E-17 6.2E-22 122.0 9.7 77 27-111 6-83 (92)
129 3d2w_A TAR DNA-binding protein 99.7 1.2E-17 3.9E-22 123.0 8.4 79 27-111 7-85 (89)
130 2wbr_A GW182, gawky, LD47780P; 99.7 8.2E-18 2.8E-22 123.2 7.2 72 31-108 7-79 (89)
131 4f02_A Polyadenylate-binding p 99.7 1.7E-17 5.8E-22 140.4 10.0 81 30-110 14-95 (213)
132 2dnp_A RNA-binding protein 14; 99.7 3.2E-17 1.1E-21 120.2 10.0 78 27-112 5-83 (90)
133 2jvr_A Nucleolar protein 3; RN 99.7 8.9E-18 3.1E-22 128.9 7.0 78 29-110 26-105 (111)
134 2dnl_A Cytoplasmic polyadenyla 99.7 1.3E-17 4.5E-22 127.9 7.9 79 29-109 6-87 (114)
135 2e5g_A U6 snRNA-specific termi 99.7 6.4E-17 2.2E-21 119.6 11.2 77 29-111 6-83 (94)
136 2f3j_A RNA and export factor b 99.7 1.8E-17 6E-22 137.2 9.0 81 29-110 86-167 (177)
137 1x5p_A Negative elongation fac 99.7 1.4E-16 4.7E-21 118.5 12.6 77 28-112 12-89 (97)
138 3beg_B Splicing factor, argini 99.7 1.5E-17 5.1E-22 128.0 7.4 76 28-110 13-94 (115)
139 2la4_A Nuclear and cytoplasmic 99.7 1.7E-17 5.8E-22 124.2 7.4 76 28-109 24-100 (101)
140 2cpd_A Apobec-1 stimulating pr 99.7 1E-16 3.4E-21 119.6 11.5 77 27-111 11-90 (99)
141 1fjc_A Nucleolin RBD2, protein 99.7 2E-17 6.8E-22 122.5 7.5 80 27-111 12-92 (96)
142 1wf0_A TDP-43, TAR DNA-binding 99.7 2.1E-17 7.3E-22 120.6 7.3 78 29-112 3-80 (88)
143 3lqv_A PRE-mRNA branch site pr 99.7 3.8E-17 1.3E-21 125.1 9.0 79 29-110 6-85 (115)
144 3pgw_S U1-70K; protein-RNA com 99.7 1.1E-16 3.7E-21 149.9 13.8 83 29-111 100-183 (437)
145 1nu4_A U1A RNA binding domain; 99.7 2.1E-17 7.3E-22 122.5 7.1 82 27-111 4-90 (97)
146 2e44_A Insulin-like growth fac 99.7 4.1E-17 1.4E-21 120.8 8.6 79 28-110 12-92 (96)
147 2cqh_A IGF-II mRNA-binding pro 99.7 2.8E-17 9.5E-22 121.2 7.5 77 29-112 6-85 (93)
148 2i2y_A Fusion protein consists 99.7 5.5E-17 1.9E-21 130.0 9.5 81 25-110 67-148 (150)
149 2j8a_A Histone-lysine N-methyl 99.7 4.1E-17 1.4E-21 127.4 8.1 79 32-110 3-96 (136)
150 2qfj_A FBP-interacting repress 99.7 1.8E-16 6.1E-21 133.0 11.9 83 29-111 123-206 (216)
151 2kvi_A Nuclear polyadenylated 99.7 6.1E-17 2.1E-21 120.3 8.0 76 28-111 7-84 (96)
152 3md3_A Nuclear and cytoplasmic 99.7 1.9E-16 6.4E-21 127.0 11.5 82 27-108 83-165 (166)
153 1sjr_A Polypyrimidine tract-bi 99.7 1.4E-16 4.6E-21 130.0 10.6 82 26-111 41-125 (164)
154 2cjk_A Nuclear polyadenylated 99.7 4.6E-17 1.6E-21 131.2 7.7 81 30-110 86-166 (167)
155 2xnq_A Nuclear polyadenylated 99.7 1.6E-16 5.4E-21 118.6 9.9 76 27-110 18-95 (97)
156 1whx_A Hypothetical protein ri 99.7 6.1E-17 2.1E-21 123.8 7.7 77 28-110 7-84 (111)
157 1fxl_A Paraneoplastic encephal 99.7 1.9E-16 6.4E-21 127.1 10.7 80 31-110 2-82 (167)
158 3egn_A RNA-binding protein 40; 99.7 9E-18 3.1E-22 133.6 2.9 87 28-114 42-134 (143)
159 2yh0_A Splicing factor U2AF 65 99.7 5.6E-16 1.9E-20 128.2 13.7 84 28-111 111-195 (198)
160 1b7f_A Protein (SXL-lethal pro 99.7 1.5E-16 5.3E-21 128.1 9.9 82 30-111 2-84 (168)
161 4f02_A Polyadenylate-binding p 99.7 3E-17 1E-21 138.9 5.0 80 30-111 102-182 (213)
162 2cjk_A Nuclear polyadenylated 99.7 1.1E-16 3.8E-21 129.0 8.0 79 30-109 2-80 (167)
163 2g4b_A Splicing factor U2AF 65 99.7 3.1E-16 1.1E-20 126.9 10.2 80 29-108 92-172 (172)
164 2voo_A Lupus LA protein; RNA-b 99.7 4E-16 1.4E-20 130.7 10.9 79 30-109 108-186 (193)
165 2e5i_A Heterogeneous nuclear r 99.7 1.4E-15 4.7E-20 118.9 13.1 77 29-111 23-103 (124)
166 1wg1_A KIAA1579 protein, homol 99.7 1.2E-16 4.1E-21 116.8 6.5 73 30-109 4-77 (88)
167 2qfj_A FBP-interacting repress 99.6 4.5E-16 1.5E-20 130.5 9.6 83 28-110 25-108 (216)
168 2cq2_A Hypothetical protein LO 99.6 3.1E-16 1.1E-20 120.7 7.5 75 28-108 22-104 (114)
169 1b7f_A Protein (SXL-lethal pro 99.6 1.4E-15 4.7E-20 122.5 10.9 80 28-107 86-168 (168)
170 2hzc_A Splicing factor U2AF 65 99.6 7.2E-16 2.5E-20 111.8 8.3 71 29-106 4-86 (87)
171 3md3_A Nuclear and cytoplasmic 99.6 8.5E-16 2.9E-20 123.1 9.5 79 32-111 1-80 (166)
172 3pgw_A U1-A; protein-RNA compl 99.6 1.7E-15 5.7E-20 132.7 11.0 83 26-111 4-91 (282)
173 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-15 5E-20 119.5 9.4 79 28-111 25-107 (130)
174 3nmr_A Cugbp ELAV-like family 99.6 1.9E-15 6.5E-20 122.3 10.1 82 30-111 2-89 (175)
175 2bz2_A Negative elongation fac 99.6 1.4E-15 4.7E-20 118.2 8.6 76 28-111 36-112 (121)
176 3tyt_A Heterogeneous nuclear r 99.6 1.2E-15 3.9E-20 129.0 8.7 76 30-110 3-80 (205)
177 1fxl_A Paraneoplastic encephal 99.6 2.4E-15 8.2E-20 120.6 10.0 80 28-107 85-167 (167)
178 3nmr_A Cugbp ELAV-like family 99.6 3.3E-15 1.1E-19 120.9 10.3 79 29-108 93-175 (175)
179 2pe8_A Splicing factor 45; RRM 99.6 4E-15 1.4E-19 112.9 9.1 80 29-108 6-92 (105)
180 2diu_A KIAA0430 protein; struc 99.6 4.6E-15 1.6E-19 109.8 8.4 71 31-111 9-85 (96)
181 3u1l_A PRE-mRNA-splicing facto 99.6 2.9E-15 9.9E-20 129.5 7.9 78 28-111 131-230 (240)
182 1fje_B Nucleolin RBD12, protei 99.6 8E-16 2.7E-20 125.1 2.9 85 26-111 8-92 (175)
183 3pgw_A U1-A; protein-RNA compl 99.6 3.1E-14 1E-18 124.6 12.7 77 27-108 203-281 (282)
184 2ghp_A U4/U6 snRNA-associated 99.6 9.4E-15 3.2E-19 128.5 9.2 82 28-110 207-291 (292)
185 2dit_A HIV TAT specific factor 99.5 3.2E-14 1.1E-18 108.6 10.9 78 29-110 13-102 (112)
186 1fje_B Nucleolin RBD12, protei 99.5 8.9E-15 3E-19 118.9 8.2 78 28-110 96-174 (175)
187 2adc_A Polypyrimidine tract-bi 99.5 1.8E-14 6.2E-19 123.0 10.4 78 28-110 31-110 (229)
188 3smz_A Protein raver-1, ribonu 99.5 2.7E-14 9.3E-19 125.1 11.2 82 30-111 94-176 (284)
189 3smz_A Protein raver-1, ribonu 99.5 1.6E-14 5.4E-19 126.6 8.9 86 28-114 181-268 (284)
190 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.1E-13 7.3E-18 102.5 13.3 76 31-112 10-92 (100)
191 1qm9_A Polypyrimidine tract-bi 99.5 2.4E-14 8.2E-19 118.8 7.9 77 30-111 2-80 (198)
192 2ghp_A U4/U6 snRNA-associated 99.5 6.2E-14 2.1E-18 123.3 9.5 83 23-107 33-115 (292)
193 2g4b_A Splicing factor U2AF 65 99.5 8.2E-14 2.8E-18 112.5 9.4 75 30-110 3-88 (172)
194 3sde_A Paraspeckle component 1 99.5 4.5E-14 1.6E-18 122.9 8.2 80 31-111 96-180 (261)
195 2yh0_A Splicing factor U2AF 65 99.5 1E-13 3.6E-18 114.4 9.0 77 30-112 3-90 (198)
196 3v4m_A Splicing factor U2AF 65 99.5 6.6E-14 2.3E-18 106.1 6.9 80 29-108 3-95 (105)
197 3tyt_A Heterogeneous nuclear r 99.5 3.3E-14 1.1E-18 120.0 5.5 76 30-107 122-204 (205)
198 1jmt_A Splicing factor U2AF 35 99.5 1.6E-14 5.6E-19 109.2 3.0 71 36-107 20-103 (104)
199 3sde_A Paraspeckle component 1 99.5 1.7E-13 5.9E-18 119.2 9.5 76 28-109 19-95 (261)
200 2adc_A Polypyrimidine tract-bi 99.4 3.6E-13 1.2E-17 114.9 9.9 75 30-109 150-227 (229)
201 1qm9_A Polypyrimidine tract-bi 99.4 1.8E-13 6.1E-18 113.5 7.5 75 30-109 119-196 (198)
202 3ue2_A Poly(U)-binding-splicin 99.4 2.6E-13 8.7E-18 105.0 7.4 79 30-108 19-107 (118)
203 3tht_A Alkylated DNA repair pr 99.3 1.5E-12 5.2E-17 118.0 8.6 75 28-108 15-97 (345)
204 1owx_A Lupus LA protein, SS-B, 99.2 4.7E-11 1.6E-15 92.5 9.2 84 19-108 6-94 (121)
205 3s6e_A RNA-binding protein 39; 99.2 2.5E-11 8.5E-16 93.2 6.6 75 30-108 6-91 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 5.5E-10 1.9E-14 81.7 8.5 71 31-109 7-85 (91)
207 3dxb_A Thioredoxin N-terminall 98.9 3.8E-09 1.3E-13 89.4 7.1 67 42-108 140-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 5.1E-09 1.8E-13 77.0 5.2 70 31-108 15-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.3 1.5E-06 5E-11 65.4 7.3 74 28-107 18-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.3 1.1E-05 3.7E-10 60.0 11.8 76 31-114 8-88 (104)
211 1wey_A Calcipressin 1; structu 97.6 0.00023 7.9E-09 53.0 8.2 74 30-109 4-83 (104)
212 1whv_A Poly(A)-specific ribonu 97.4 0.00047 1.6E-08 50.7 7.5 54 30-92 15-68 (100)
213 1wwh_A Nucleoporin 35, nucleop 97.4 0.00074 2.5E-08 51.5 8.3 74 27-107 20-94 (119)
214 3ctr_A Poly(A)-specific ribonu 97.1 0.00063 2.1E-08 50.1 4.9 53 31-92 6-58 (101)
215 1uw4_A UPF3X; nonsense mediate 96.8 0.0046 1.6E-07 44.9 7.4 65 32-96 2-69 (91)
216 3pq1_A Poly(A) RNA polymerase; 96.2 0.0022 7.5E-08 59.9 3.0 58 30-93 52-109 (464)
217 3p3d_A Nucleoporin 53; structu 96.1 0.0067 2.3E-07 46.9 4.8 77 31-108 7-97 (132)
218 2kn4_A Immunoglobulin G-bindin 95.2 0.017 5.8E-07 45.2 4.1 33 60-94 2-34 (158)
219 2i2y_A Fusion protein consists 94.6 0.0087 3E-07 46.7 0.9 40 69-109 9-50 (150)
220 2l08_A Regulator of nonsense t 94.0 0.034 1.2E-06 40.7 2.9 64 31-94 9-74 (97)
221 3d45_A Poly(A)-specific ribonu 87.5 0.94 3.2E-05 42.6 6.5 55 30-93 439-493 (507)
222 2g0c_A ATP-dependent RNA helic 63.4 20 0.00069 23.8 5.9 67 33-108 2-75 (76)
223 4f25_A Polyadenylate-binding p 60.9 1.8 6E-05 31.7 0.0 19 29-47 95-113 (115)
224 2crl_A Copper chaperone for su 55.5 49 0.0017 22.9 7.3 56 32-94 21-77 (98)
225 3fry_A Probable copper-exporti 48.9 37 0.0013 21.8 5.2 57 31-94 6-62 (73)
226 3bb5_A Stress responsive alpha 45.2 88 0.003 22.9 7.4 65 28-92 18-93 (121)
227 4eyt_A Telomerase associated p 44.3 83 0.0028 22.4 7.3 56 29-92 10-65 (129)
228 3bgu_A Ferredoxin-like protein 41.0 75 0.0026 23.1 6.3 67 24-91 15-91 (116)
229 2i9x_A Putative septation prot 34.3 53 0.0018 23.1 4.2 26 57-82 5-30 (87)
230 3mfb_A Uncharacterized protein 34.2 59 0.002 25.5 4.9 37 43-79 3-42 (157)
231 3lpe_A Putative transcription 33.2 1.2E+02 0.0042 21.0 6.1 33 57-94 39-71 (92)
232 3ts2_A Protein LIN-28 homolog 32.4 7.4 0.00025 30.2 -0.6 28 46-81 2-29 (148)
233 2lfv_A Protein DAMX; cell divi 38.1 9.8 0.00033 27.9 0.0 58 39-98 30-89 (106)
234 3fut_A Dimethyladenosine trans 30.6 82 0.0028 26.6 5.7 46 32-94 111-156 (271)
235 2ia9_A Putative septation prot 29.6 68 0.0023 23.1 4.2 26 57-82 5-30 (100)
236 4e8u_A Putative uncharacterize 29.2 1E+02 0.0035 24.5 5.6 57 33-92 14-82 (172)
237 2i9z_A Putative septation prot 28.5 74 0.0025 23.2 4.3 26 57-82 5-30 (105)
238 3swz_A Steroid 17-alpha-hydrox 26.6 63 0.0022 28.8 4.5 58 34-100 17-78 (494)
239 2qyc_A Ferredoxin-like protein 25.7 1.7E+02 0.0058 20.3 6.7 56 36-92 10-75 (103)
240 3uzu_A Ribosomal RNA small sub 25.2 63 0.0022 27.4 4.0 34 32-65 115-148 (279)
241 2cu1_A Mitogen-activated prote 24.3 45 0.0015 24.2 2.4 63 38-108 23-86 (103)
242 1xn9_A 30S ribosomal protein S 24.0 1.2E+02 0.0041 21.8 4.7 48 41-89 28-80 (101)
243 2g1d_A 30S ribosomal protein S 23.6 30 0.001 24.9 1.4 47 41-88 29-80 (98)
244 1ywx_A 30S ribosomal protein S 23.4 1.4E+02 0.0046 21.6 4.9 47 41-88 28-79 (102)
245 1q8l_A Copper-transporting ATP 22.5 1.6E+02 0.0055 18.9 7.3 59 30-94 9-71 (84)
246 2v94_A RPS24, 30S ribosomal pr 22.4 1.3E+02 0.0046 21.8 4.7 47 41-88 37-88 (107)
247 1fme_A FSD-EY peptide; beta-BE 21.8 49 0.0017 17.5 1.6 12 44-55 14-25 (28)
248 1i4w_A Mitochondrial replicati 21.8 1.1E+02 0.0037 27.1 4.9 23 32-54 143-165 (353)
249 2exu_A Transcription initiatio 21.7 1.5E+02 0.005 24.1 5.3 26 71-96 147-172 (200)
250 3bn7_A Ferredoxin-like protein 21.6 1.7E+02 0.0059 21.2 5.4 60 31-90 21-93 (120)
251 4bby_A Alkyldihydroxyacetoneph 21.0 77 0.0026 30.4 4.1 53 39-92 351-407 (658)
No 1
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.6e-21 Score=149.96 Aligned_cols=88 Identities=60% Similarity=1.043 Sum_probs=81.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEE
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (258)
.+..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++.+|+|+.|+
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 89 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 89 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECE
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEE
Confidence 44567778999999999999999999999999999999999999999999999999999999999999988799999999
Q ss_pred EEeccCCC
Q 025068 104 CNLASLGR 111 (258)
Q Consensus 104 V~~a~~~~ 111 (258)
|+++..+.
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997543
No 2
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=1.2e-21 Score=150.41 Aligned_cols=91 Identities=25% Similarity=0.333 Sum_probs=81.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCce
Q 025068 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (258)
Q Consensus 23 ~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (258)
..+..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 17 GSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp SCCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred ccCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344556677899999999999999999999999999999999999899999999999999999999998855 6799999
Q ss_pred EEEEeccCCCCC
Q 025068 102 ANCNLASLGRPR 113 (258)
Q Consensus 102 i~V~~a~~~~~~ 113 (258)
|+|+++..+..+
T Consensus 97 l~V~~a~~~~~~ 108 (115)
T 2cpz_A 97 LKVQLKRSKNDS 108 (115)
T ss_dssp CEEECCCCSCCC
T ss_pred EEEEEcCCCCcC
Confidence 999999765443
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=145.68 Aligned_cols=79 Identities=28% Similarity=0.423 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
..++|||+|||.++||++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|+|+.|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999999999999999999999999999999999854 67999999999985
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=149.74 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.++ ..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999999865 6799999999999
Q ss_pred cCCCC
Q 025068 108 SLGRP 112 (258)
Q Consensus 108 ~~~~~ 112 (258)
..++.
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 65543
No 5
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.9e-20 Score=143.57 Aligned_cols=88 Identities=36% Similarity=0.574 Sum_probs=80.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45668899999999999999999999999999999999999899999999999999999999999865 67999999999
Q ss_pred eccCCCCCC
Q 025068 106 LASLGRPRP 114 (258)
Q Consensus 106 ~a~~~~~~~ 114 (258)
++..+..+.
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998665543
No 6
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=5e-21 Score=146.20 Aligned_cols=88 Identities=35% Similarity=0.640 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (258)
.++...++|||+||+.++++++|+++|++||.|++|+|++++.++++||||||+|.+.++|++||+.++..|+|+.|+|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999998878999999999
Q ss_pred eccCCCCC
Q 025068 106 LASLGRPR 113 (258)
Q Consensus 106 ~a~~~~~~ 113 (258)
++..++.+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99766544
No 7
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=140.85 Aligned_cols=86 Identities=17% Similarity=0.346 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
...+...++|||+||+.++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445667899999999999999999999999999999999998 89999999999999999999998855 669999999
Q ss_pred EEeccCCC
Q 025068 104 CNLASLGR 111 (258)
Q Consensus 104 V~~a~~~~ 111 (258)
|+++..+.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99996543
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=139.97 Aligned_cols=87 Identities=28% Similarity=0.551 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEe
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (258)
++...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|++
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999444779999999999
Q ss_pred ccCCCCC
Q 025068 107 ASLGRPR 113 (258)
Q Consensus 107 a~~~~~~ 113 (258)
+..+..+
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9765443
No 9
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=4.7e-21 Score=150.87 Aligned_cols=92 Identities=25% Similarity=0.425 Sum_probs=82.4
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC
Q 025068 21 YLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (258)
Q Consensus 21 ~~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G 99 (258)
......+....++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|
T Consensus 36 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 36 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CCCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33444556678899999999999999999999999999999999999999999999999999999999999854 77999
Q ss_pred ceEEEEeccCCCC
Q 025068 100 RRANCNLASLGRP 112 (258)
Q Consensus 100 ~~i~V~~a~~~~~ 112 (258)
++|+|+++..+++
T Consensus 116 ~~l~V~~a~~~~p 128 (129)
T 2kxn_B 116 RRIRVDFSITKRP 128 (129)
T ss_dssp SCCEESCCSSSSC
T ss_pred EEEEEEEecCCCC
Confidence 9999999976654
No 10
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=9.8e-21 Score=138.06 Aligned_cols=82 Identities=33% Similarity=0.728 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (258)
.++...++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++.+|+|+.|+|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999888788999999999
Q ss_pred ec
Q 025068 106 LA 107 (258)
Q Consensus 106 ~a 107 (258)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 11
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=144.40 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=74.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-C-CccCCceEEEEec
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-T-PFIDGRRANCNLA 107 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~G~~i~V~~a 107 (258)
+++|||+|||.++||++|+++|++|| .|++|+|++|+.|+++||||||+|.+.++|++||+.+ + ..|+|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999885 4 3599999999999
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 12
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=141.89 Aligned_cols=89 Identities=25% Similarity=0.432 Sum_probs=80.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~ 103 (258)
+.+....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345566789999999999999999999999999999999999999999999999999999999999975 4779999999
Q ss_pred EEeccCCCCC
Q 025068 104 CNLASLGRPR 113 (258)
Q Consensus 104 V~~a~~~~~~ 113 (258)
|+++..++.+
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999765443
No 13
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-20 Score=141.79 Aligned_cols=85 Identities=36% Similarity=0.656 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34558999999999999999999999999999999999999999999999999999999999999557799999999999
Q ss_pred cCCCC
Q 025068 108 SLGRP 112 (258)
Q Consensus 108 ~~~~~ 112 (258)
..+..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 76543
No 14
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-21 Score=144.83 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC--EEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCC-----ccC
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGE--ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-----FID 98 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~--I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-----~i~ 98 (258)
..+...++|||+||++++|+++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+.++. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 45667889999999999999999999999995 56999999999999999999999999999999998542 489
Q ss_pred CceEEEEeccC
Q 025068 99 GRRANCNLASL 109 (258)
Q Consensus 99 G~~i~V~~a~~ 109 (258)
||+|.|++|+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999953
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.1e-20 Score=139.40 Aligned_cols=86 Identities=28% Similarity=0.366 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999865 67999999999
Q ss_pred eccCCCC
Q 025068 106 LASLGRP 112 (258)
Q Consensus 106 ~a~~~~~ 112 (258)
++..++.
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9975543
No 16
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=142.11 Aligned_cols=87 Identities=37% Similarity=0.728 Sum_probs=79.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (258)
.++...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 35667899999999999999999999999999999999999989999999999999999999999994467999999999
Q ss_pred eccCCCC
Q 025068 106 LASLGRP 112 (258)
Q Consensus 106 ~a~~~~~ 112 (258)
++..+..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9975543
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=139.85 Aligned_cols=86 Identities=28% Similarity=0.371 Sum_probs=79.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999765 67999999999
Q ss_pred eccCCCC
Q 025068 106 LASLGRP 112 (258)
Q Consensus 106 ~a~~~~~ 112 (258)
++..+..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 18
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-20 Score=138.07 Aligned_cols=87 Identities=34% Similarity=0.642 Sum_probs=79.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (258)
+..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+. .+.|+|+.|+|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEE
Confidence 34556678999999999999999999999999999999999998999999999999999999999995 46799999999
Q ss_pred EeccCCCC
Q 025068 105 NLASLGRP 112 (258)
Q Consensus 105 ~~a~~~~~ 112 (258)
+++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99976543
No 19
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.5e-20 Score=140.31 Aligned_cols=85 Identities=20% Similarity=0.348 Sum_probs=74.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceE
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (258)
.+..+...++|||+||+.++++++|+++|++||.|++|+|+.+ ++++|||||+|.+.++|++||+.++ ..|+|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3345567889999999999999999999999999999999664 5689999999999999999998855 67999999
Q ss_pred EEEeccCCC
Q 025068 103 NCNLASLGR 111 (258)
Q Consensus 103 ~V~~a~~~~ 111 (258)
+|+++..++
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999996554
No 20
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=2.4e-20 Score=150.69 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999865 679999999999
Q ss_pred ccCCCC
Q 025068 107 ASLGRP 112 (258)
Q Consensus 107 a~~~~~ 112 (258)
+...+.
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976544
No 21
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.1e-20 Score=140.64 Aligned_cols=88 Identities=27% Similarity=0.416 Sum_probs=79.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-------CCccC
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-------TPFID 98 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-------~~~i~ 98 (258)
.+....++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34566789999999999999999999999999999999999999999999999999999999999985 45699
Q ss_pred CceEEEEeccCCCCC
Q 025068 99 GRRANCNLASLGRPR 113 (258)
Q Consensus 99 G~~i~V~~a~~~~~~ 113 (258)
|+.|+|+++..+..+
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999765444
No 22
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=145.90 Aligned_cols=87 Identities=28% Similarity=0.459 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
++...++|||+||+.++++++|+++|++||.|++|+|++++.++++||||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999865 56999999999
Q ss_pred eccCCCCC
Q 025068 106 LASLGRPR 113 (258)
Q Consensus 106 ~a~~~~~~ 113 (258)
++..+..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99765443
No 23
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=9.3e-20 Score=137.18 Aligned_cols=87 Identities=20% Similarity=0.368 Sum_probs=77.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (258)
+..+...++|||+||+.++++++|+++|++|| |++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 87 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence 34456688999999999999999999999996 99999999999999999999999999999999943457799999999
Q ss_pred EeccCCCC
Q 025068 105 NLASLGRP 112 (258)
Q Consensus 105 ~~a~~~~~ 112 (258)
+++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99975543
No 24
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=1.4e-20 Score=149.27 Aligned_cols=93 Identities=29% Similarity=0.509 Sum_probs=83.4
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCc
Q 025068 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (258)
Q Consensus 22 ~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~ 100 (258)
...+.+....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3445566778899999999999999999999999999999999999899999999999999999999999865 679999
Q ss_pred eEEEEeccCCCCCC
Q 025068 101 RANCNLASLGRPRP 114 (258)
Q Consensus 101 ~i~V~~a~~~~~~~ 114 (258)
.|+|++++.++++.
T Consensus 118 ~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 118 ELRVQMARYGRPPD 131 (135)
T ss_dssp CCEEEECCCCCCCT
T ss_pred EEEEEECCCCCCCc
Confidence 99999997665544
No 25
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=148.85 Aligned_cols=89 Identities=17% Similarity=0.272 Sum_probs=79.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE--EEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-C----c
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P----F 96 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~--v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~----~ 96 (258)
.+..+...++|||+||+++++|++|+++|++||.|+. |+|++|+.|+++||||||+|.+. +|++||+.++ . .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445667889999999999999999999999999976 99999999999999999999999 9999999855 6 8
Q ss_pred cCCceEEEEeccCCCCC
Q 025068 97 IDGRRANCNLASLGRPR 113 (258)
Q Consensus 97 i~G~~i~V~~a~~~~~~ 113 (258)
|+|+.|+|+++..++.+
T Consensus 95 ~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGGCCCCCEECCCSCCC
T ss_pred CCCEEEEEEECCCCCCC
Confidence 99999999999765433
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.1e-20 Score=136.63 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999999999899999999999999999999998765 669999999999
Q ss_pred ccCCCC
Q 025068 107 ASLGRP 112 (258)
Q Consensus 107 a~~~~~ 112 (258)
+..++.
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 976544
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=138.73 Aligned_cols=88 Identities=24% Similarity=0.413 Sum_probs=79.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeec-CCCCCcccEEEEEEcCHHHHHHHhcCC-C-CccCCceE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD-KNTGRSKGYGFVTFREPEAARRACADP-T-PFIDGRRA 102 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d-~~tg~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~G~~i 102 (258)
..+...++|||+||+.++++++|+++|++||.|++|+|+++ +.+++++|||||+|.+.++|++||+.+ + ..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567889999999999999999999999999999999999 788999999999999999999999986 4 67999999
Q ss_pred EEEeccCCCCC
Q 025068 103 NCNLASLGRPR 113 (258)
Q Consensus 103 ~V~~a~~~~~~ 113 (258)
+|+++..+...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999765443
No 28
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.8e-20 Score=142.53 Aligned_cols=84 Identities=26% Similarity=0.392 Sum_probs=77.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceE
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (258)
.+.++...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456677999999999999999999999999999999999999899999999999999999999999865 67999999
Q ss_pred EEEec
Q 025068 103 NCNLA 107 (258)
Q Consensus 103 ~V~~a 107 (258)
+|+++
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 99987
No 29
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7e-20 Score=138.08 Aligned_cols=87 Identities=16% Similarity=0.376 Sum_probs=77.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHhcCCCCccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~t-g~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (258)
+..+...++|||+||+.++++++|+++|++|| |++|+|++++.+ ++++|||||+|.+.++|++||..++..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 34556679999999999999999999999999 999999999987 9999999999999999999993345779999999
Q ss_pred EEeccCCCC
Q 025068 104 CNLASLGRP 112 (258)
Q Consensus 104 V~~a~~~~~ 112 (258)
|+++..++.
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999976543
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=134.65 Aligned_cols=83 Identities=35% Similarity=0.593 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V~~a 107 (258)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34689999999999999999999999999999999999999999999999999999999999975 47799999999999
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
..+.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6543
No 31
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=141.37 Aligned_cols=85 Identities=29% Similarity=0.529 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+....++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999999998 89999999999999999999999865 67999999999
Q ss_pred eccCCCC
Q 025068 106 LASLGRP 112 (258)
Q Consensus 106 ~a~~~~~ 112 (258)
++..+..
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9975543
No 32
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=146.47 Aligned_cols=89 Identities=18% Similarity=0.326 Sum_probs=77.6
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCce
Q 025068 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRR 101 (258)
Q Consensus 22 ~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~ 101 (258)
..........++|||+|||+++++++|+++|++||.|+++.++.+..+++++|||||+|.+.++|++||+.++..|+|+.
T Consensus 16 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 16 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp CCCSSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 33444556778999999999999999999999999999877777777899999999999999999999994446799999
Q ss_pred EEEEeccCC
Q 025068 102 ANCNLASLG 110 (258)
Q Consensus 102 i~V~~a~~~ 110 (258)
|+|.++..+
T Consensus 96 i~V~~a~~~ 104 (124)
T 1wel_A 96 IQVHPITKK 104 (124)
T ss_dssp BEEEEECHH
T ss_pred EEEEECCHH
Confidence 999999654
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.1e-19 Score=136.98 Aligned_cols=85 Identities=27% Similarity=0.335 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC---ceEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG---RRAN 103 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G---~~i~ 103 (258)
+...++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++ ..|.+ +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999998 79999999999999999999999855 56787 9999
Q ss_pred EEeccCCCCC
Q 025068 104 CNLASLGRPR 113 (258)
Q Consensus 104 V~~a~~~~~~ 113 (258)
|+++..+..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999765544
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.9e-20 Score=143.20 Aligned_cols=82 Identities=29% Similarity=0.479 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (258)
.++|||+|||.+++|++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.++ ..|+|+.|+|+++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999996 5589999999999999999999855 679999999999976
Q ss_pred CCCCC
Q 025068 110 GRPRP 114 (258)
Q Consensus 110 ~~~~~ 114 (258)
++.+.
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 65443
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=136.50 Aligned_cols=84 Identities=26% Similarity=0.454 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v-~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
..++|||+|||.++++++|+++|++||.|++| +|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 999998899999999999999999999999866 6699999999999
Q ss_pred cCCCCC
Q 025068 108 SLGRPR 113 (258)
Q Consensus 108 ~~~~~~ 113 (258)
..+..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 765443
No 36
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=136.27 Aligned_cols=86 Identities=30% Similarity=0.494 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
++...++|||+||+.++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4557889999999999999999999999999999999998 79999999999999999999999854 67999999999
Q ss_pred eccCCCCCC
Q 025068 106 LASLGRPRP 114 (258)
Q Consensus 106 ~a~~~~~~~ 114 (258)
++..++.+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 997665443
No 37
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.4e-20 Score=134.97 Aligned_cols=83 Identities=27% Similarity=0.414 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999855 67999999999
Q ss_pred eccC
Q 025068 106 LASL 109 (258)
Q Consensus 106 ~a~~ 109 (258)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9853
No 38
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.4e-20 Score=142.11 Aligned_cols=84 Identities=21% Similarity=0.331 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC-CCCccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~-~~~~i~G~~i~V~ 105 (258)
++...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++|| . ++..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3456689999999999999999999999999999999999999999999999999999999999 6 4567999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++..++
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 996543
No 39
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.1e-20 Score=137.23 Aligned_cols=86 Identities=24% Similarity=0.415 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhc-CCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Cc-cCCceEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF-IDGRRAN 103 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~-fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~-i~G~~i~ 103 (258)
+....++|||+||+.++++++|+++|++ ||.|++|+|++++ +++++|||||+|.+.++|++||+.++ .. |+|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999999 89999999999999999999999765 67 9999999
Q ss_pred EEeccCCCCC
Q 025068 104 CNLASLGRPR 113 (258)
Q Consensus 104 V~~a~~~~~~ 113 (258)
|+++..+..+
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999765443
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.3e-20 Score=137.65 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=79.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANC 104 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V 104 (258)
......++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999985 47799999999
Q ss_pred EeccCCCC
Q 025068 105 NLASLGRP 112 (258)
Q Consensus 105 ~~a~~~~~ 112 (258)
+++..+.+
T Consensus 98 ~~a~~~~~ 105 (106)
T 1p27_B 98 DWCFVRGP 105 (106)
T ss_dssp EESEESSC
T ss_pred EeecCCCC
Confidence 99976543
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=8.3e-20 Score=137.92 Aligned_cols=86 Identities=28% Similarity=0.417 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Ccc---CCceE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI---DGRRA 102 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i---~G~~i 102 (258)
.+...++|||+||+.++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.++ ..+ +++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45668899999999999999999999999999999999999999999999999999999999999855 556 88999
Q ss_pred EEEeccCCCC
Q 025068 103 NCNLASLGRP 112 (258)
Q Consensus 103 ~V~~a~~~~~ 112 (258)
+|+++..++.
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999976543
No 42
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=9.5e-20 Score=134.55 Aligned_cols=81 Identities=22% Similarity=0.479 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4457899999999999999999999999999999999999999999999999999999999998765 669999999999
Q ss_pred cc
Q 025068 107 AS 108 (258)
Q Consensus 107 a~ 108 (258)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 83
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.6e-20 Score=136.64 Aligned_cols=85 Identities=34% Similarity=0.647 Sum_probs=77.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999999899999999999999999999998854 679999999999
Q ss_pred ccCCCC
Q 025068 107 ASLGRP 112 (258)
Q Consensus 107 a~~~~~ 112 (258)
+..+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 976543
No 44
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.3e-20 Score=138.68 Aligned_cols=81 Identities=19% Similarity=0.375 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCC--CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG--~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
.+|||+||++++++++|+++|++|| .|++|+|++|+.++++||||||+|.+.++|++||+.++ .+|+|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999998865 67999999999997
Q ss_pred CCCC
Q 025068 109 LGRP 112 (258)
Q Consensus 109 ~~~~ 112 (258)
...+
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 5543
No 45
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=136.32 Aligned_cols=86 Identities=23% Similarity=0.385 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+....++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44557899999999999999999999999999999999998 59999999999999999999999854 67999999999
Q ss_pred eccCCCCC
Q 025068 106 LASLGRPR 113 (258)
Q Consensus 106 ~a~~~~~~ 113 (258)
++....++
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99755444
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.3e-19 Score=130.73 Aligned_cols=79 Identities=34% Similarity=0.524 Sum_probs=74.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccCC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (258)
++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999999899999999999999999999999854 7799999999999654
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=8.1e-20 Score=132.89 Aligned_cols=82 Identities=35% Similarity=0.528 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356799999999999999999999999999999999998899999999999999999999999854 6799999999999
Q ss_pred cCC
Q 025068 108 SLG 110 (258)
Q Consensus 108 ~~~ 110 (258)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-20 Score=138.23 Aligned_cols=85 Identities=32% Similarity=0.450 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 457899999999999999999999999999999999999899999999999999999999998855 6699999999999
Q ss_pred cCCCCC
Q 025068 108 SLGRPR 113 (258)
Q Consensus 108 ~~~~~~ 113 (258)
..++.+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765443
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9.1e-20 Score=135.78 Aligned_cols=84 Identities=25% Similarity=0.482 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~---tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
...++|||+||+.++++++|+++|++||.|++|+|++++. |++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999876 66999999999999999999999865 6799999999
Q ss_pred EeccCCCC
Q 025068 105 NLASLGRP 112 (258)
Q Consensus 105 ~~a~~~~~ 112 (258)
+++..+..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99975543
No 50
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=134.90 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEE-EEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCce----E
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEIL-EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR----A 102 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~-~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~----i 102 (258)
...++|||+||+.++++++|+++|++||.|+ +|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3578999999999999999999999999999 99999999999999999999999999999999866 6699999 9
Q ss_pred EEEeccCC
Q 025068 103 NCNLASLG 110 (258)
Q Consensus 103 ~V~~a~~~ 110 (258)
+|++|...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999644
No 51
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-20 Score=143.65 Aligned_cols=83 Identities=16% Similarity=0.279 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCE-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I-~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (258)
+...++|||+|||+++++++|+++|++||.| .+|+|++|+ ++++||||||+|.+.++|++||+.++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4456899999999999999999999999999 899999999 89999999999999999999999955779999999999
Q ss_pred ccCCC
Q 025068 107 ASLGR 111 (258)
Q Consensus 107 a~~~~ 111 (258)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97554
No 52
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-19 Score=134.45 Aligned_cols=86 Identities=24% Similarity=0.318 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
.++...++|||+||+.++++++|+++|++||.|++|+|++++. .++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3556789999999999999999999999999999999999964 478999999999999999999755 6699999999
Q ss_pred EeccCCCCC
Q 025068 105 NLASLGRPR 113 (258)
Q Consensus 105 ~~a~~~~~~ 113 (258)
+++..+..+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999765443
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1e-19 Score=138.41 Aligned_cols=89 Identities=25% Similarity=0.338 Sum_probs=80.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
+......++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3445667899999999999999999999999999999999999899999999999999999999999754 679999999
Q ss_pred EEeccCCCCC
Q 025068 104 CNLASLGRPR 113 (258)
Q Consensus 104 V~~a~~~~~~ 113 (258)
|+++..+.++
T Consensus 100 V~~a~~~~~~ 109 (110)
T 1oo0_B 100 VDWCFVKGPK 109 (110)
T ss_dssp EEESEESSCC
T ss_pred EEEcccCCCC
Confidence 9999765443
No 54
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.1e-20 Score=139.65 Aligned_cols=88 Identities=25% Similarity=0.399 Sum_probs=79.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEE--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-C
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P 95 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~--------~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~ 95 (258)
+.++...++|||+||+.++++++|+++|++||.|+ +|+|++++.+++++|||||+|.+.++|++||+.++ .
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34566789999999999999999999999999999 69999998899999999999999999999999854 6
Q ss_pred ccCCceEEEEeccCCCC
Q 025068 96 FIDGRRANCNLASLGRP 112 (258)
Q Consensus 96 ~i~G~~i~V~~a~~~~~ 112 (258)
.|+|+.|+|+++..+..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 79999999999976543
No 55
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-19 Score=134.45 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~-v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (258)
....++|||+|||+++++++|+++|++||.|.+ |+|+++ .+++++|||||+|.+.++|++||+.++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 455789999999999999999999999999997 888888 689999999999999999999999966779999999999
Q ss_pred ccCCC
Q 025068 107 ASLGR 111 (258)
Q Consensus 107 a~~~~ 111 (258)
+..++
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 56
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.1e-19 Score=141.63 Aligned_cols=90 Identities=23% Similarity=0.329 Sum_probs=81.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
+......++|||+||+.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3445567899999999999999999999999999999999999899999999999999999999998754 779999999
Q ss_pred EEeccCCCCCC
Q 025068 104 CNLASLGRPRP 114 (258)
Q Consensus 104 V~~a~~~~~~~ 114 (258)
|+++..+..+.
T Consensus 96 v~~a~~~~~~~ 106 (126)
T 3ex7_B 96 VDWCFVRGPPK 106 (126)
T ss_dssp EEESEESSSCC
T ss_pred EEEecCCCCCC
Confidence 99997665443
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.2e-19 Score=131.16 Aligned_cols=81 Identities=20% Similarity=0.442 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEeccC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (258)
+.++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||..++..|+|+.|+|++++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46899999999999999999999999999999999999899999999999999999999993355779999999999965
Q ss_pred C
Q 025068 110 G 110 (258)
Q Consensus 110 ~ 110 (258)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.3e-20 Score=136.31 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.+...++|||+|||.++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999998866 67999999999
Q ss_pred eccC
Q 025068 106 LASL 109 (258)
Q Consensus 106 ~a~~ 109 (258)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9853
No 59
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=136.01 Aligned_cols=92 Identities=18% Similarity=0.402 Sum_probs=79.0
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-C
Q 025068 17 SGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P 95 (258)
Q Consensus 17 sg~~~~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~ 95 (258)
.+.........+...++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++ .
T Consensus 11 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 11 SGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp SCCCCCCCSCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred cccccchhcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 333333444556678999999999999999999999999999999999998 89999999999999999999999855 5
Q ss_pred cc--------CCceEEEEeccC
Q 025068 96 FI--------DGRRANCNLASL 109 (258)
Q Consensus 96 ~i--------~G~~i~V~~a~~ 109 (258)
.| .++.|.|+++.+
T Consensus 90 ~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 90 FIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCCCTTSCCCSSCBEEEECCC
T ss_pred EEcCCccccCCCCceeEEccCC
Confidence 57 578899999853
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.2e-19 Score=132.53 Aligned_cols=86 Identities=29% Similarity=0.504 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
..+...++|||+||+.++++++|+++|++||.|++|+|++++. .++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456679999999999999999999999999999999999864 489999999999999999999854 6799999999
Q ss_pred EeccCCCCC
Q 025068 105 NLASLGRPR 113 (258)
Q Consensus 105 ~~a~~~~~~ 113 (258)
+++..+..+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999765443
No 61
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=134.78 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCC-EEEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHhcCCC---CccCCceEEE
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVI-TDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~-I~~v~v~-~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~V 104 (258)
..++|||+||+.++++++|+++|++||. |++|.|+ .++.++++||||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4689999999999999999999999998 9999998 888889999999999999999999999864 5699999999
Q ss_pred EeccCCCCC
Q 025068 105 NLASLGRPR 113 (258)
Q Consensus 105 ~~a~~~~~~ 113 (258)
+++..+...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999765443
No 62
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=134.13 Aligned_cols=84 Identities=30% Similarity=0.453 Sum_probs=75.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
+..+...++|||+||+.++++++|+++|++||.|++|+|++++. ++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34556789999999999999999999999999999999999985 9999999999999999999999754 679999999
Q ss_pred EEeccC
Q 025068 104 CNLASL 109 (258)
Q Consensus 104 V~~a~~ 109 (258)
|++++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999853
No 63
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-20 Score=138.92 Aligned_cols=88 Identities=27% Similarity=0.537 Sum_probs=80.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
|..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4456677899999999999999999999999999999999999899999999999999999999998755 679999999
Q ss_pred EEeccCCCC
Q 025068 104 CNLASLGRP 112 (258)
Q Consensus 104 V~~a~~~~~ 112 (258)
|+++..++.
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 999976543
No 64
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=136.32 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEe
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (258)
.+...++|||+|||.++|+++|+++|++||.|++|.|++|+. +++||||||+|.+.++|++||+.++..|+|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999999987 9999999999999999999999555789999999998
Q ss_pred ccC
Q 025068 107 ASL 109 (258)
Q Consensus 107 a~~ 109 (258)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 753
No 65
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.7e-19 Score=130.68 Aligned_cols=81 Identities=32% Similarity=0.472 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V~~ 106 (258)
+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999999889999999999999999999999885 4679999999999
Q ss_pred cc
Q 025068 107 AS 108 (258)
Q Consensus 107 a~ 108 (258)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 83
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=147.78 Aligned_cols=82 Identities=18% Similarity=0.394 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCC--CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG--~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
...++|||+||+++++|++|+++|++|| .|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999965 67999999999
Q ss_pred eccCC
Q 025068 106 LASLG 110 (258)
Q Consensus 106 ~a~~~ 110 (258)
++..+
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99643
No 67
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.9e-20 Score=138.90 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC--C-CccCCceEEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP--T-PFIDGRRANC 104 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~--~-~~i~G~~i~V 104 (258)
+...++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.+ + .+|+|+.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 445789999999999999999999999999999999876 689999999999999999963 2 5699999999
Q ss_pred EeccCCCC
Q 025068 105 NLASLGRP 112 (258)
Q Consensus 105 ~~a~~~~~ 112 (258)
++|..++.
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99975543
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=136.30 Aligned_cols=88 Identities=32% Similarity=0.545 Sum_probs=80.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCce
Q 025068 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRR 101 (258)
Q Consensus 23 ~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~ 101 (258)
+.+..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 44556677899999999999999999999999999999999999989999999999999999999999975 46799999
Q ss_pred EEEEeccCC
Q 025068 102 ANCNLASLG 110 (258)
Q Consensus 102 i~V~~a~~~ 110 (258)
|+|+++..+
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999999654
No 69
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.7e-20 Score=130.67 Aligned_cols=76 Identities=39% Similarity=0.759 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999998999999999999999999999999887799999999987
No 70
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=133.20 Aligned_cols=83 Identities=28% Similarity=0.414 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCc
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPF 96 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~--------v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~ 96 (258)
......++|||+||+.++++++|+++|++||.|++ |+|++++.+++++|||||+|.+.++|++||+.+ +..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456789999999999999999999999999999 999999999999999999999999999999975 477
Q ss_pred cCCceEEEEecc
Q 025068 97 IDGRRANCNLAS 108 (258)
Q Consensus 97 i~G~~i~V~~a~ 108 (258)
|+|+.|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999973
No 71
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=6.6e-20 Score=137.74 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCC------CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC-
Q 025068 28 DTTYTKVFVGGLAW------ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG- 99 (258)
Q Consensus 28 ~~~~~~lfVgnLp~------~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G- 99 (258)
+...++|||+|||. ++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.++ ..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999855 67999
Q ss_pred ceEEEEeccC
Q 025068 100 RRANCNLASL 109 (258)
Q Consensus 100 ~~i~V~~a~~ 109 (258)
+.|+|+++..
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999964
No 72
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=2.7e-19 Score=132.90 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (258)
.++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999999899999999999999999999998854 679999999999965
Q ss_pred CC
Q 025068 110 GR 111 (258)
Q Consensus 110 ~~ 111 (258)
++
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 73
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=133.85 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
....++|||+|||++++|++|+++|++||. ++|+|++|+ ++++||||||+|.+.++|++||+.++.+|++|.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 445689999999999999999999999995 599999998 899999999999999999999976557799999999998
Q ss_pred cCC
Q 025068 108 SLG 110 (258)
Q Consensus 108 ~~~ 110 (258)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.3e-19 Score=128.35 Aligned_cols=75 Identities=39% Similarity=0.754 Sum_probs=71.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
+|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999996567899999999875
No 75
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2.1e-19 Score=139.12 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---EEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~---I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (258)
+..+.++|||+||++++++++|+++|++||. |++|+|++++. +++||||||+|.+.++|++||+.++.+|+|+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 4556789999999999999999999999999 89999999986 9999999999999999999999544679999999
Q ss_pred EEeccCC
Q 025068 104 CNLASLG 110 (258)
Q Consensus 104 V~~a~~~ 110 (258)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998644
No 76
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=130.75 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCC-cccEEEEEEcCHHHHHHHhcCC-CCccCCceEEEEec
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR-SKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~-skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V~~a 107 (258)
..++|||+||+.++++++|+++|++||.|++|+|+.++.++. ++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 8999999999999999999984 47799999999999
Q ss_pred cCCCC
Q 025068 108 SLGRP 112 (258)
Q Consensus 108 ~~~~~ 112 (258)
...++
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 77
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=5.3e-20 Score=136.19 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+|||.++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999999999999998899999999999999999999999854 6799999999988
Q ss_pred cC
Q 025068 108 SL 109 (258)
Q Consensus 108 ~~ 109 (258)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 78
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=132.85 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC-----c
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG-----R 100 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G-----~ 100 (258)
.....++|||+||++++++++|+++|++||+|++|+|+++ |||||+|.+.++|++||+.++ .+|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999886 799999999999999999866 56989 9
Q ss_pred eEEEEeccCCCCC
Q 025068 101 RANCNLASLGRPR 113 (258)
Q Consensus 101 ~i~V~~a~~~~~~ 113 (258)
.|+|+++..+...
T Consensus 84 ~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 84 YIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEEESSCCSCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999765443
No 79
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=3.5e-19 Score=134.67 Aligned_cols=83 Identities=29% Similarity=0.395 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~ 103 (258)
+......++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4455678899999999999999999999999999999999999 8999999999999999999999985 4779999999
Q ss_pred EEecc
Q 025068 104 CNLAS 108 (258)
Q Consensus 104 V~~a~ 108 (258)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 80
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=7e-19 Score=129.32 Aligned_cols=83 Identities=28% Similarity=0.514 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.....++|||+|||.++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3445789999999999999999999999999999999985 79999999999999999999999854 67999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++....
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 996543
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=7.6e-19 Score=141.84 Aligned_cols=88 Identities=30% Similarity=0.538 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.....++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999865 66999999999
Q ss_pred eccCCCCCC
Q 025068 106 LASLGRPRP 114 (258)
Q Consensus 106 ~a~~~~~~~ 114 (258)
++..++++.
T Consensus 146 ~a~~~~~~~ 154 (158)
T 2kn4_A 146 MARYGRPPD 154 (158)
T ss_dssp EECCSSCCC
T ss_pred ECCCCCCCC
Confidence 997665443
No 82
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.1e-19 Score=128.65 Aligned_cols=75 Identities=31% Similarity=0.581 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
+|||+|||.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998778899999999875
No 83
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=7.6e-19 Score=136.36 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEecc
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (258)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 35689999999999999999999999999999999999889999999999999999999999434477999999999996
Q ss_pred CC
Q 025068 109 LG 110 (258)
Q Consensus 109 ~~ 110 (258)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 84
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=5.8e-19 Score=151.91 Aligned_cols=81 Identities=19% Similarity=0.381 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC--CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG--~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
..++|||+||++++||++|+++|++|| .|++|+|++|+.|+++||||||+|.+.++|++||+.++ ++|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999866 779999999999
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
|..+
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9643
No 85
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=134.39 Aligned_cols=84 Identities=19% Similarity=0.408 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecC-CCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK-NTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~-~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (258)
......++|||+||+.++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++||+.++..|+|+.|+|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence 3456789999999999999999999999999 9999999998 6899999999999999999999943557799999999
Q ss_pred EeccCC
Q 025068 105 NLASLG 110 (258)
Q Consensus 105 ~~a~~~ 110 (258)
+++..+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999643
No 86
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=137.65 Aligned_cols=81 Identities=32% Similarity=0.476 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.+...++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999998866 66999999998
Q ss_pred ec
Q 025068 106 LA 107 (258)
Q Consensus 106 ~a 107 (258)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 87
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=127.69 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+|||.++++++|+++|++| .|++|+|+++ .+++++|||||+|.+.++|++||+ ++ ..|+|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 689999999999999999999999 66 569999999999
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
+..+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9654
No 88
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-19 Score=131.56 Aligned_cols=79 Identities=27% Similarity=0.474 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999999999899999999999999999999999865 6689988877765
No 89
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.8e-19 Score=130.15 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCcHHHHH----HHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 30 TYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~----~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
+.++|||+||++++++++|+ ++|++||.|++|+|++|+.+ ||||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 46799999999999999999 99999999999999999865 8899999999999999999865 6699999999
Q ss_pred EeccCC
Q 025068 105 NLASLG 110 (258)
Q Consensus 105 ~~a~~~ 110 (258)
++|..+
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999544
No 90
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=128.79 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccC--CceEEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID--GRRANC 104 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~--G~~i~V 104 (258)
....++|||+||+.++++++|+++|++||.|++|+++++ ||||||+|.+.++|++||+.++ ..|+ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999998764 6799999999999999999854 6788 999999
Q ss_pred EeccCCC
Q 025068 105 NLASLGR 111 (258)
Q Consensus 105 ~~a~~~~ 111 (258)
+++..+.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9996543
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=3.7e-18 Score=132.69 Aligned_cols=85 Identities=27% Similarity=0.373 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.....++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999755 66999999999
Q ss_pred eccCCCC
Q 025068 106 LASLGRP 112 (258)
Q Consensus 106 ~a~~~~~ 112 (258)
+|.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9975543
No 92
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=4.2e-19 Score=133.21 Aligned_cols=85 Identities=31% Similarity=0.559 Sum_probs=77.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (258)
+..+...++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+ .+..|+|+.|.|
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 3455667899999999999999999999999999999999998 89999999999999999999999 667799999999
Q ss_pred EeccCCC
Q 025068 105 NLASLGR 111 (258)
Q Consensus 105 ~~a~~~~ 111 (258)
.++..+.
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9997554
No 93
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=3.7e-19 Score=139.65 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEE--EEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--EAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~--~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (258)
+....++|||+|||+++||++|+++|++| .|+ +|+|++|+. |++||||||+|.+.++|++||+.++.+|+||.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 34457889999999999999999999999 677 899999987 99999999999999999999998778899999999
Q ss_pred EeccC
Q 025068 105 NLASL 109 (258)
Q Consensus 105 ~~a~~ 109 (258)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98854
No 94
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=129.29 Aligned_cols=81 Identities=26% Similarity=0.373 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.+...++|||+||+.++++++|+++|++||.| +|+++ .+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45568899999999999999999999999987 56666 579999999999999999999999765 66999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++..+.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 996553
No 95
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.3e-19 Score=134.53 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
....++|||+|||+++++++|+++|+.| .|++|+|++|+. |++||||||+|.+.++|++||+.++++|+||.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3456799999999999999999999999 899999999985 99999999999999999999965667799999999988
Q ss_pred cC
Q 025068 108 SL 109 (258)
Q Consensus 108 ~~ 109 (258)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 96
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1e-18 Score=142.62 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=79.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
+......++|||+||+.++++++|+++|++||.|++|.|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4445567899999999999999999999999999999999999999999999999999999999999855 669999999
Q ss_pred EEeccCCCCCCC
Q 025068 104 CNLASLGRPRPQ 115 (258)
Q Consensus 104 V~~a~~~~~~~~ 115 (258)
|.++..+..+..
T Consensus 146 V~~a~~~~~~~~ 157 (165)
T 1rk8_A 146 VDWCFVKGPKRV 157 (165)
T ss_dssp EEESEECC----
T ss_pred EEEecCCCCCCC
Confidence 999987655443
No 97
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.9e-19 Score=132.00 Aligned_cols=79 Identities=29% Similarity=0.547 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccCC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (258)
++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.+ |++||+.++ ..|+|+.|+|++|..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999999966 6699999999999754
Q ss_pred C
Q 025068 111 R 111 (258)
Q Consensus 111 ~ 111 (258)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 98
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=129.85 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC---CCccCCceEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP---TPFIDGRRAN 103 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~---~~~i~G~~i~ 103 (258)
.....++|||+||+++++|++|+++|++||.|++|.|+++ ||||||+|++.++|++||+.+ ..+|+|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999998865 789999999999999999864 2569999999
Q ss_pred EEeccCCCC
Q 025068 104 CNLASLGRP 112 (258)
Q Consensus 104 V~~a~~~~~ 112 (258)
|+++..++.
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999975543
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.2e-19 Score=134.76 Aligned_cols=84 Identities=25% Similarity=0.348 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH---HHHhcCCCEEEEEEeecCCCC---CcccEEEEEEcCHHHHHHHhcCCC-CccCCc
Q 025068 28 DTTYTKVFVGGLAWETQSETMR---RYFEQFGEILEAVVITDKNTG---RSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~---~~F~~fG~I~~v~v~~d~~tg---~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~ 100 (258)
....++|||+|||+++++++|+ ++|++||.|++|+|++++.++ +++|||||+|.+.++|++||+.++ ..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457799999999999999999 999999999999999998754 456999999999999999999955 679999
Q ss_pred eEEEEeccCCC
Q 025068 101 RANCNLASLGR 111 (258)
Q Consensus 101 ~i~V~~a~~~~ 111 (258)
.|+|++|..+.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999996553
No 100
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-19 Score=134.99 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||+.++++++|+++|++||.|.+ .++.++.++++||||||+|.+.++|++||+ ++ ..|+|+.|+|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 445789999999999999999999999999988 777787789999999999999999999999 65 679999999999
Q ss_pred ccCCCC
Q 025068 107 ASLGRP 112 (258)
Q Consensus 107 a~~~~~ 112 (258)
+..++.
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 965543
No 101
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=129.01 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC---CccCCceEEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~V 104 (258)
....++|||+||+++++|++|+++|++||.|++|.|+++ ||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999998764 6899999999999999999743 3599999999
Q ss_pred EeccCCCC
Q 025068 105 NLASLGRP 112 (258)
Q Consensus 105 ~~a~~~~~ 112 (258)
+++..++.
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99975543
No 102
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=3.3e-18 Score=128.71 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||+.++++++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3457899999999999999999999999999999986 3499999999999999999855 679999999999
Q ss_pred ccCCCCCCC
Q 025068 107 ASLGRPRPQ 115 (258)
Q Consensus 107 a~~~~~~~~ 115 (258)
+..+..++.
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 976655443
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=134.22 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC---CccCCceEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRAN 103 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~ 103 (258)
.....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ .+|+|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3455789999999999999999999999999999999876 6899999999999999999754 469999999
Q ss_pred EEeccCCCCC
Q 025068 104 CNLASLGRPR 113 (258)
Q Consensus 104 V~~a~~~~~~ 113 (258)
|++++.++.+
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999755443
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=132.87 Aligned_cols=85 Identities=28% Similarity=0.517 Sum_probs=76.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceE
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (258)
....+...++|||+||+.++++++|+++|++||.|++|+|++++ +.+||||||+|.+.++|++||+.++ ..|+|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456678999999999999999999999999999999999985 4589999999999999999999854 67999999
Q ss_pred EEEeccCC
Q 025068 103 NCNLASLG 110 (258)
Q Consensus 103 ~V~~a~~~ 110 (258)
+|+++..+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999643
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=129.60 Aligned_cols=75 Identities=25% Similarity=0.436 Sum_probs=69.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccCC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (258)
++|||+||+.++++++|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.++ ..|+|+.|+|+++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 68999999999999999999854 7799999999999765
Q ss_pred C
Q 025068 111 R 111 (258)
Q Consensus 111 ~ 111 (258)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=131.47 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC---CccCCceEEEE
Q 025068 30 TYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANCN 105 (258)
Q Consensus 30 ~~~~lfVgnLp~-~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~V~ 105 (258)
..++|||+||++ +++|++|+++|++||.|++|.|+++ ||||||+|++.++|++||+.++ .+|+|++|+|+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 578999999999 9999999999999999999999876 4799999999999999999754 35999999999
Q ss_pred eccCC
Q 025068 106 LASLG 110 (258)
Q Consensus 106 ~a~~~ 110 (258)
+|...
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99643
No 107
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=127.80 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
.+....++|||+||+.++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999997 677654 678999999999999999998854 7799999999
Q ss_pred EeccCCC
Q 025068 105 NLASLGR 111 (258)
Q Consensus 105 ~~a~~~~ 111 (258)
+++..++
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9996553
No 108
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=128.82 Aligned_cols=82 Identities=33% Similarity=0.503 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.....++|||+||+.++++++|+++|+.| .+|++++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999987 368888998899999999999999999999999854 67999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++..+.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 996543
No 109
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=9.8e-19 Score=138.97 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---EEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~---I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (258)
+..+.++|||+|||+++|+++|+++|++||. |++|+|++|+. +++||||||+|.+.++|++||+.++.+|+||.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEE
Confidence 4456789999999999999999999999999 89999999987 9999999999999999999999434679999999
Q ss_pred EEeccCC
Q 025068 104 CNLASLG 110 (258)
Q Consensus 104 V~~a~~~ 110 (258)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998543
No 110
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=129.56 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=69.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-C--ccCCceE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P--FIDGRRA 102 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~--~i~G~~i 102 (258)
......++|||+|||.++++++|+++|++||.|++|+++++ ||||||+|++.++|++||+.++ . .|.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34456789999999999999999999999999999999854 6899999999999999999865 3 3889999
Q ss_pred EEEeccCC
Q 025068 103 NCNLASLG 110 (258)
Q Consensus 103 ~V~~a~~~ 110 (258)
+|++++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999654
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=132.57 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.....++|||+||+.++++++|+++|++||.|++|.+..+..+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999998543322222278999999999999999999999855 67999999999
Q ss_pred eccCCCCCC
Q 025068 106 LASLGRPRP 114 (258)
Q Consensus 106 ~a~~~~~~~ 114 (258)
++..++.+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 997665443
No 112
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=132.09 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC---CccCCceE
Q 025068 27 GDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRA 102 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i 102 (258)
.....++|||+||+++ ++|++|+++|++||.|++|.|++ +||||||+|.+.++|++||+.++ .+|+|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556789999999998 99999999999999999999975 37899999999999999999753 45999999
Q ss_pred EEEeccCCC
Q 025068 103 NCNLASLGR 111 (258)
Q Consensus 103 ~V~~a~~~~ 111 (258)
+|+++..++
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999996543
No 113
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=6.3e-19 Score=140.58 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (258)
....+.++|||+|||+++||++|+++|++|| |++|+|++|+. +++||||||+|++.++|++||+.++.+|+++.|+|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3455678999999999999999999999999 77999999986 999999999999999999999555578999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
.+..+.
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 986543
No 114
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=128.26 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCC------cHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC
Q 025068 27 GDTTYTKVFVGGLAWET------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~------te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G 99 (258)
.+...++|||+|||.++ ++++|+++|++||.|++|+|++ .+|++||||||+|.+.++|++||+.++ ..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 44457899999999999 7899999999999999999883 579999999999999999999999866 66999
Q ss_pred c-eEEEEeccC
Q 025068 100 R-RANCNLASL 109 (258)
Q Consensus 100 ~-~i~V~~a~~ 109 (258)
+ .|+|+++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999954
No 115
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.6e-19 Score=138.06 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCE----EEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEI----LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I----~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (258)
....++|||+|||+++|+++|+++|++||.| ++|.|++|+ ++++||||||+|.+.++|++||+.+++.|++|.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3557899999999999999999999999976 689999995 79999999999999999999999866779999999
Q ss_pred EEeccCC
Q 025068 104 CNLASLG 110 (258)
Q Consensus 104 V~~a~~~ 110 (258)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988543
No 116
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=121.93 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||+.++++++|+++|++||.|++|+|+ ||||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3457899999999999999999999999999999987 5799999999999999998855 679999999999
Q ss_pred ccCCCC
Q 025068 107 ASLGRP 112 (258)
Q Consensus 107 a~~~~~ 112 (258)
+..+..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 965543
No 117
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=131.40 Aligned_cols=83 Identities=11% Similarity=0.217 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---EEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~---I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (258)
+....++|||+||++++++++|+++|+.||. |++|+|++|+. ++++|||||+|.+.++|++||+.++..|+|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3456789999999999999999999999998 89999999987 9999999999999999999999544679999999
Q ss_pred EEeccCC
Q 025068 104 CNLASLG 110 (258)
Q Consensus 104 V~~a~~~ 110 (258)
|.++..+
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998643
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=7.1e-18 Score=128.36 Aligned_cols=76 Identities=24% Similarity=0.487 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~-~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
....++|||+||+++ +++++|+++|++||.|++|+| ++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344589999999999 999999999999999999988 57899999999999999998855 67999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++...+
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 996443
No 119
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=120.99 Aligned_cols=78 Identities=31% Similarity=0.475 Sum_probs=70.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-C-CccCCceE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-T-PFIDGRRA 102 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~G~~i 102 (258)
+.++...++|||+||+.++++++|+++|++||.|++|+++++ ||||||+|.+.++|++||+.+ + ..|+|+.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 345567889999999999999999999999999999999874 689999999999999999986 5 56999999
Q ss_pred EEEecc
Q 025068 103 NCNLAS 108 (258)
Q Consensus 103 ~V~~a~ 108 (258)
+|++|+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999973
No 120
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=8.4e-18 Score=139.04 Aligned_cols=88 Identities=38% Similarity=0.604 Sum_probs=79.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEE
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (258)
.+.+....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~ 85 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 85 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEee
Confidence 34456678999999999999999999999999999999999999999999999999999999999999977889999999
Q ss_pred EEeccCCC
Q 025068 104 CNLASLGR 111 (258)
Q Consensus 104 V~~a~~~~ 111 (258)
|.++..+.
T Consensus 86 v~~~~~~~ 93 (196)
T 1l3k_A 86 PKRAVSRE 93 (196)
T ss_dssp EEECCC--
T ss_pred eecccCcc
Confidence 99986543
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-19 Score=139.21 Aligned_cols=85 Identities=27% Similarity=0.400 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Ccc
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~--------v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 97 (258)
++...++|||+||+.++++++|+++|++||.|++ |+|++++.+++++|||||+|.+.++|++||+.++ ..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4556789999999999999999999999999999 9999998899999999999999999999999865 679
Q ss_pred CCceEEEEeccCCC
Q 025068 98 DGRRANCNLASLGR 111 (258)
Q Consensus 98 ~G~~i~V~~a~~~~ 111 (258)
+|+.|+|+++..+.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999996543
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=122.61 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=65.9
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCc-eE
Q 025068 31 YTKVFVGGLAWET------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR-RA 102 (258)
Q Consensus 31 ~~~lfVgnLp~~~------te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~-~i 102 (258)
.++|||+|||.++ ++++|+++|++||.|++|+|++ .++++||||||+|.+.++|++||+.++ ..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 7899999999999999999873 479999999999999999999999866 669999 88
Q ss_pred EEE
Q 025068 103 NCN 105 (258)
Q Consensus 103 ~V~ 105 (258)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=5.1e-18 Score=129.29 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCc
Q 025068 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (258)
Q Consensus 22 ~~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~ 100 (258)
...+..+...++|||+||+.++++++|+++|++||.|++|+|+ +|||||+|.+.++|++||+.++ ..|+|+
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3445567788999999999999999999999999999999987 6899999999999999999854 679999
Q ss_pred eEEEEeccCCCC
Q 025068 101 RANCNLASLGRP 112 (258)
Q Consensus 101 ~i~V~~a~~~~~ 112 (258)
.|+|+++..+..
T Consensus 94 ~l~V~~a~~~~~ 105 (108)
T 2jvo_A 94 PLEVVYSKLPAK 105 (108)
T ss_dssp ECEEESCSCCC-
T ss_pred EEEEEEecCCCC
Confidence 999999965543
No 124
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.2e-17 Score=138.18 Aligned_cols=87 Identities=28% Similarity=0.558 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEec
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (258)
....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|.+||+.++..|+|+.|.|+++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999998999999999999999999999998778899999999999
Q ss_pred cCCCCCC
Q 025068 108 SLGRPRP 114 (258)
Q Consensus 108 ~~~~~~~ 114 (258)
.++....
T Consensus 181 ~~k~~~~ 187 (196)
T 1l3k_A 181 LSKQEMA 187 (196)
T ss_dssp C------
T ss_pred CChhHhc
Confidence 7665443
No 125
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.9e-18 Score=127.34 Aligned_cols=79 Identities=30% Similarity=0.534 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.+...++|||+||+.++++++|+++|++||.|++|+|+++ +|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 6899999999999999998854 67999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++..+.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 996554
No 126
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=124.30 Aligned_cols=77 Identities=27% Similarity=0.465 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||+.++++++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 445789999999999999999999999999999999865 6899999999999999998854 679999999999
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
+..+
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 9654
No 127
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=130.70 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceE
Q 025068 28 DTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~----~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (258)
....++|||+||++++++++|+ ++|++||.|++|.+.+ ++++||||||+|.+.++|++||+.++ ..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999988754 58899999999999999999999865 67999999
Q ss_pred EEEeccCCC
Q 025068 103 NCNLASLGR 111 (258)
Q Consensus 103 ~V~~a~~~~ 111 (258)
+|++|..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999996543
No 128
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=122.01 Aligned_cols=77 Identities=25% Similarity=0.445 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.....++|||+||+.++++++|+++|++||.|++|+|+++ ||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 4556789999999999999999999999999999999743 99999999999999999855 67999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++..+.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 996543
No 129
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=1.2e-17 Score=122.97 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=64.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEe
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (258)
.....++|||+||++++||++|+++|++||.|++|+|+++ +||||||+|++.++|+++... ...+.|+.|.|++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEE
Confidence 4566789999999999999999999999999999999875 789999999999999965433 3447899999999
Q ss_pred ccCCC
Q 025068 107 ASLGR 111 (258)
Q Consensus 107 a~~~~ 111 (258)
|.++.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 96543
No 130
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=8.2e-18 Score=123.24 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
...|||+||++++||++|+++|.+||+|++++++. +||||||+|.+.++|++||+.+| ..|+||.|+|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56899999999999999999999999999999865 58999999999999999999966 66999999999984
No 131
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.7e-17 Score=140.41 Aligned_cols=81 Identities=27% Similarity=0.404 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
..++|||+|||.++||++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999865 56999999999985
Q ss_pred CC
Q 025068 109 LG 110 (258)
Q Consensus 109 ~~ 110 (258)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 132
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=120.22 Aligned_cols=78 Identities=29% Similarity=0.513 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.....++|||+||+.++++++|+++|++||.|++|+|+++ ||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999743 99999999999999999854 67999999999
Q ss_pred eccCCCC
Q 025068 106 LASLGRP 112 (258)
Q Consensus 106 ~a~~~~~ 112 (258)
++..++.
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 133
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=8.9e-18 Score=128.89 Aligned_cols=78 Identities=13% Similarity=0.030 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
...++|||+|||+++++++|+++|++|| +|+.++|+. .+++|||||+|.+.++|++||+.++ .+|+|+.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999999999 999998854 3478999999999999999999866 669999999999
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 9643
No 134
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=127.91 Aligned_cols=79 Identities=24% Similarity=0.373 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCC---CCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEE
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~t---g~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (258)
...++|||+||++++++++|+++|++||.|+ +.++.++.+ |++||||||+|.+.++|++||+.++ .++|+.|.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEec
Confidence 3468999999999999999999999999999 888888877 7999999999999999999999873 4899999888
Q ss_pred eccC
Q 025068 106 LASL 109 (258)
Q Consensus 106 ~a~~ 109 (258)
.+..
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6643
No 135
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.4e-17 Score=119.60 Aligned_cols=77 Identities=21% Similarity=0.391 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||++++++++|+++|++||.|++| +.++.+++ ||||+|.+.++|++||+ ++ ..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 346799999999999999999999999999987 66665666 99999999999999999 65 6799999999988
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
..++
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6443
No 136
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=1.8e-17 Score=137.24 Aligned_cols=81 Identities=27% Similarity=0.389 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||+.++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 89999999999999999999999765 6799999999999
Q ss_pred cCC
Q 025068 108 SLG 110 (258)
Q Consensus 108 ~~~ 110 (258)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 643
No 137
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-16 Score=118.48 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+|| ++++++|+++|++||.|++|+|. +++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 89999999999999999999984 467899999999999999998866 569999999999
Q ss_pred ccCCCC
Q 025068 107 ASLGRP 112 (258)
Q Consensus 107 a~~~~~ 112 (258)
+..+..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 976543
No 138
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=1.5e-17 Score=127.98 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCce-----
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR----- 101 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~----- 101 (258)
....++|||+||+.++++++|+++|++||+|++|+|+++ |||||+|.+.++|++||+.++ .+|+|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 456789999999999999999999999999999999876 799999999999999999855 6799998
Q ss_pred EEEEeccCC
Q 025068 102 ANCNLASLG 110 (258)
Q Consensus 102 i~V~~a~~~ 110 (258)
|+|+.+..+
T Consensus 86 i~v~~~~~~ 94 (115)
T 3beg_B 86 IRVKVDGPR 94 (115)
T ss_dssp CEEEECC--
T ss_pred EEeccCCCC
Confidence 777776543
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-17 Score=124.16 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||+.++++++|+++|++||.|++|+|+ ++||||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999997 357899999999999999998854 679999999999
Q ss_pred ccC
Q 025068 107 ASL 109 (258)
Q Consensus 107 a~~ 109 (258)
++.
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 854
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=119.58 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=68.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcC--CCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~f--G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (258)
.....++|||+||+.++++++|+++|++| |.|++|++. +|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 999999774 5699999999999999999755 669999999
Q ss_pred EEeccCCC
Q 025068 104 CNLASLGR 111 (258)
Q Consensus 104 V~~a~~~~ 111 (258)
|+++..+.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99996543
No 141
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=122.55 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.+...++|||+||+.++++++|+++|++||.|+.+ ..+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 2368999999999999999999999866 66999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++..+.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 996543
No 142
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=120.65 Aligned_cols=78 Identities=22% Similarity=0.488 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEecc
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (258)
...++|||+|||.++++++|+++|++||.|++|+|+++ +||||||+|.+.++|++|+.. ...++++.|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999999765 689999999999999876554 345799999999996
Q ss_pred CCCC
Q 025068 109 LGRP 112 (258)
Q Consensus 109 ~~~~ 112 (258)
.++.
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5543
No 143
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=3.8e-17 Score=125.06 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+|||.++++++|+++|++||.|++|.|+++ +.++|||||+|.+.++|++||+.++ ..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45679999999999999999999999999999999976 5569999999999999999999754 6799999999999
Q ss_pred cCC
Q 025068 108 SLG 110 (258)
Q Consensus 108 ~~~ 110 (258)
..+
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 754
No 144
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=1.1e-16 Score=149.86 Aligned_cols=83 Identities=24% Similarity=0.512 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||+.+||+++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++||+.++ .+|+|+.|.|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999999899999999999999999999998866 6799999999999
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
..+.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 145
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=2.1e-17 Score=122.49 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCce
Q 025068 27 GDTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (258)
+....++|||+||+.++++++|+ ++|++||.|++|+|++ +++++|||||+|.+.++|++||+.++ ..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999998874 57889999999999999999999854 6799999
Q ss_pred EEEEeccCCC
Q 025068 102 ANCNLASLGR 111 (258)
Q Consensus 102 i~V~~a~~~~ 111 (258)
|+|+++..+.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999997654
No 146
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=120.80 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v-~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
....++|||+||+.++++++|+++|++||.|++| .|++++.++. |||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 5888875443 9999999999999999854 77999999999
Q ss_pred eccCC
Q 025068 106 LASLG 110 (258)
Q Consensus 106 ~a~~~ 110 (258)
++..+
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99655
No 147
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-17 Score=121.16 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCC-EEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC--CccCCceEEEE
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRRANCN 105 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~-I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~G~~i~V~ 105 (258)
...++|||+||+.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 5555552 47899999999999999999854 56999999999
Q ss_pred eccCCCC
Q 025068 106 LASLGRP 112 (258)
Q Consensus 106 ~a~~~~~ 112 (258)
++..+..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9975543
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=5.5e-17 Score=130.04 Aligned_cols=81 Identities=23% Similarity=0.353 Sum_probs=72.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEE
Q 025068 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRAN 103 (258)
Q Consensus 25 p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~ 103 (258)
.......++|||+||++++++++|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 334566789999999999999999999999999999999876 5899999999999999999975 4679999999
Q ss_pred EEeccCC
Q 025068 104 CNLASLG 110 (258)
Q Consensus 104 V~~a~~~ 110 (258)
|+++..+
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999654
No 149
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.1e-17 Score=127.45 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=70.0
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcC----HHH----HHHHhc--CCC-Cc
Q 025068 32 TKVFVGGL----AWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE----PEA----ARRACA--DPT-PF 96 (258)
Q Consensus 32 ~~lfVgnL----p~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~----~~~----A~~Ai~--~~~-~~ 96 (258)
++|||+|| +++++|++|+++|+.||+|.+|+++.|+.||+++|||||+|.| .++ |.+||. .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 889988 545 56
Q ss_pred cCCceEEEEeccCC
Q 025068 97 IDGRRANCNLASLG 110 (258)
Q Consensus 97 i~G~~i~V~~a~~~ 110 (258)
|+|+.|+|++....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987543
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=1.8e-16 Score=132.98 Aligned_cols=83 Identities=22% Similarity=0.480 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|.+||+.++ ..|+|+.|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 345799999999999999999999999999999999999899999999999999999999999854 7799999999999
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
..+.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7553
No 151
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.1e-17 Score=120.28 Aligned_cols=76 Identities=21% Similarity=0.456 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 28 ~~~~~~lfVgnLp~-~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
....++|||+||+. ++++++|+++|++||.|++|+|. ||||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44578999999998 99999999999999999999883 6899999999999999999854 67999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++..+.
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 997554
No 152
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.9e-16 Score=127.01 Aligned_cols=82 Identities=33% Similarity=0.527 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
.....++|||+||+.++++++|+++|++||.|+++++++++.+++++|+|||+|.+.++|.+||+.++ ..|+|+.|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999855 67999999999
Q ss_pred ecc
Q 025068 106 LAS 108 (258)
Q Consensus 106 ~a~ 108 (258)
+|+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.4e-16 Score=130.05 Aligned_cols=82 Identities=16% Similarity=0.322 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC--ceE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RRA 102 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i 102 (258)
....+..+|||+||++++++++|+++|++||+|++|+|..++ ++|||||+|++.++|++||+.++ ..|.+ +.|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 344567789999999999999999999999999999987542 57899999999999999999876 56855 999
Q ss_pred EEEeccCCC
Q 025068 103 NCNLASLGR 111 (258)
Q Consensus 103 ~V~~a~~~~ 111 (258)
+|++++.++
T Consensus 117 ~V~~Ak~~~ 125 (164)
T 1sjr_A 117 RIDFSKLTS 125 (164)
T ss_dssp EEEECSSSS
T ss_pred EEEEecCCc
Confidence 999997553
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=4.6e-17 Score=131.22 Aligned_cols=81 Identities=31% Similarity=0.631 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEeccC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (258)
..++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+..+..|+|+.|+|++|.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 45699999999999999999999999999999999998899999999999999999999999544679999999999965
Q ss_pred C
Q 025068 110 G 110 (258)
Q Consensus 110 ~ 110 (258)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=1.6e-16 Score=118.56 Aligned_cols=76 Identities=22% Similarity=0.517 Sum_probs=67.6
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 27 GDTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
.....++|||+||+. ++++++|+++|++||.|++|+|. +|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999882 7899999999999999999855 6699999999
Q ss_pred EeccCC
Q 025068 105 NLASLG 110 (258)
Q Consensus 105 ~~a~~~ 110 (258)
++++.+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998543
No 156
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.1e-17 Score=123.83 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
+...++|||+||+.++++++|+++|++||.|++|.|++ ++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 33568999999999999999999999999999998864 46799999999999999999865 679999999999
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 9654
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=1.9e-16 Score=127.13 Aligned_cols=80 Identities=29% Similarity=0.432 Sum_probs=74.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEEEEeccC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLASL 109 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V~~a~~ 109 (258)
.++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+.+ +..+.|+.|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 579999999999999999999999999999999999989999999999999999999999975 4679999999999864
Q ss_pred C
Q 025068 110 G 110 (258)
Q Consensus 110 ~ 110 (258)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=9e-18 Score=133.61 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEE--E---eecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCce
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAV--V---ITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~--v---~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (258)
....++|||+||+.++++++|+++|++||.|.+|. + ++...+++++|||||+|.+.++|++||+.++ ..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44568999999999999999999999999987641 1 1112368999999999999999999999855 6699999
Q ss_pred EEEEeccCCCCCC
Q 025068 102 ANCNLASLGRPRP 114 (258)
Q Consensus 102 i~V~~a~~~~~~~ 114 (258)
|+|++|...+++.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999997665544
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.68 E-value=5.6e-16 Score=128.18 Aligned_cols=84 Identities=24% Similarity=0.418 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999854 679999999999
Q ss_pred ccCCC
Q 025068 107 ASLGR 111 (258)
Q Consensus 107 a~~~~ 111 (258)
+..+.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 96543
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=1.5e-16 Score=128.08 Aligned_cols=82 Identities=24% Similarity=0.343 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V~~a~ 108 (258)
..++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3579999999999999999999999999999999999989999999999999999999999875 467999999999996
Q ss_pred CCC
Q 025068 109 LGR 111 (258)
Q Consensus 109 ~~~ 111 (258)
.+.
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=3e-17 Score=138.91 Aligned_cols=80 Identities=29% Similarity=0.475 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
..++|||+||+.++++++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.++ .+|+|++|+|++|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 5689999999999999999999855 77999999999996
Q ss_pred CCC
Q 025068 109 LGR 111 (258)
Q Consensus 109 ~~~ 111 (258)
+++
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 543
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.1e-16 Score=128.97 Aligned_cols=79 Identities=30% Similarity=0.729 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEeccC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (258)
..++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+. .+.++|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999998999999999999999999999996 4679999999998854
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=3.1e-16 Score=126.89 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
...++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 346899999999999999999999999999999999998899999999999999999999999854 6799999999997
Q ss_pred c
Q 025068 108 S 108 (258)
Q Consensus 108 ~ 108 (258)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=4e-16 Score=130.73 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEeccC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (258)
..++|||+|||.++++++|+++|++||.|.+|+|++++ ++++||||||+|++.++|++||+.++..|+|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999987 49999999999999999999999988899999999998854
No 165
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.4e-15 Score=118.88 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccE-EEEEEcCHHHHHHHhcCCC-CccCC--ceEEE
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFREPEAARRACADPT-PFIDG--RRANC 104 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~-aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~V 104 (258)
.....|||+||++.+++++|+++|++||.|++|+|+.. .|| |||+|.+.++|++||+.++ ..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 34456789999999999999999999999999998652 276 9999999999999999965 66877 68999
Q ss_pred EeccCCC
Q 025068 105 NLASLGR 111 (258)
Q Consensus 105 ~~a~~~~ 111 (258)
++|+.+.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9996553
No 166
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=1.2e-16 Score=116.80 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
..++|||+|||+++++++|+++|++| .|++|+|. ++||||||+|.+.++|++||+.++ ..++|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999884 578999999999999999999865 66999999999985
Q ss_pred C
Q 025068 109 L 109 (258)
Q Consensus 109 ~ 109 (258)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=4.5e-16 Score=130.49 Aligned_cols=83 Identities=29% Similarity=0.437 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V~~ 106 (258)
....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 345689999999999999999999999999999999999989999999999999999999999975 4679999999998
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
+...
T Consensus 105 ~~~~ 108 (216)
T 2qfj_A 105 PSNI 108 (216)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7644
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=120.69 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=65.8
Q ss_pred CCCCcEEEE--cCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Ccc-----CC
Q 025068 28 DTTYTKVFV--GGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI-----DG 99 (258)
Q Consensus 28 ~~~~~~lfV--gnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i-----~G 99 (258)
+...++||| +||+++++|++|+++|++||+|++|.|+.+ ||||||+|.+.++|++||+.++ .+| .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345678999 779999999999999999999999987643 6899999999999999999866 556 68
Q ss_pred ceEEEEecc
Q 025068 100 RRANCNLAS 108 (258)
Q Consensus 100 ~~i~V~~a~ 108 (258)
+.|+|.++.
T Consensus 96 ~~l~v~~a~ 104 (114)
T 2cq2_A 96 ITLYLNFVE 104 (114)
T ss_dssp EECEEEEES
T ss_pred cEEEEEecc
Confidence 899999985
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=1.4e-15 Score=122.45 Aligned_cols=80 Identities=25% Similarity=0.467 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCC--ceEEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RRANC 104 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~V 104 (258)
....++|||+||+.++++++|+++|++||.|++++|++++.+++++|+|||+|.+.++|.+|++.++ ..|+| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3457899999999999999999999999999999999999889999999999999999999999855 66877 99999
Q ss_pred Eec
Q 025068 105 NLA 107 (258)
Q Consensus 105 ~~a 107 (258)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=7.2e-16 Score=111.79 Aligned_cols=71 Identities=20% Similarity=0.427 Sum_probs=64.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCc
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPF 96 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~f----G-------~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~ 96 (258)
...++|||+||+.++++++|+++|++| | .|.++++.++ ||||||+|.+.++|++|| .+ +..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 9999998755 789999999999999999 64 467
Q ss_pred cCCceEEEEe
Q 025068 97 IDGRRANCNL 106 (258)
Q Consensus 97 i~G~~i~V~~ 106 (258)
|+|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.5e-16 Score=123.15 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEeccCC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (258)
++|||+|||.++++++|+++|++||.|++|+|++++. ++++|||||+|.+.++|++||+.++ ..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999984 8899999999999999999997754 6799999999999654
Q ss_pred C
Q 025068 111 R 111 (258)
Q Consensus 111 ~ 111 (258)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.7e-15 Score=132.70 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCc
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~----~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~ 100 (258)
.+....++|||+||+.++++++|+ ++|++||.|++|+|++ ++++||||||+|.+.++|++||+.++ ..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345668899999999999999977 8999999999999886 58899999999999999999998865 669999
Q ss_pred eEEEEeccCCC
Q 025068 101 RANCNLASLGR 111 (258)
Q Consensus 101 ~i~V~~a~~~~ 111 (258)
.|+|+++..+.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999996544
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.5e-15 Score=119.51 Aligned_cols=79 Identities=15% Similarity=0.356 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccE-EEEEEcCHHHHHHHhcCCC-CccCC--ceEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFREPEAARRACADPT-PFIDG--RRAN 103 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~-aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~ 103 (258)
..+.-+|||+||+..+|+++|+++|++||.|++|+|+++ .+|| |||+|.+.++|++||+.++ ..|.+ +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 345678899999999999999999999999999988764 2677 9999999999999999966 56877 8999
Q ss_pred EEeccCCC
Q 025068 104 CNLASLGR 111 (258)
Q Consensus 104 V~~a~~~~ 111 (258)
|++++.++
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99997553
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=1.9e-15 Score=122.28 Aligned_cols=82 Identities=28% Similarity=0.362 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCC--CcccEEEEEEcCHHHHHHHhcCCC-CccC---CceEE
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG--RSKGYGFVTFREPEAARRACADPT-PFID---GRRAN 103 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg--~skG~aFV~F~~~~~A~~Ai~~~~-~~i~---G~~i~ 103 (258)
+.++|||+|||.++++++|+++|++||.|++|+|++++.++ +++|||||+|.+.++|++||+.++ ..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999876 899999999999999999999855 3443 67788
Q ss_pred EEeccCCC
Q 025068 104 CNLASLGR 111 (258)
Q Consensus 104 V~~a~~~~ 111 (258)
+..+....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876443
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=1.4e-15 Score=118.17 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=67.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+|| ++++++|+++|++||.|++|+|. ++||||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999996 69999999999999999999985 467899999999999999998854 679999999999
Q ss_pred ccCCC
Q 025068 107 ASLGR 111 (258)
Q Consensus 107 a~~~~ 111 (258)
+..+.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 97553
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1.2e-15 Score=129.01 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=69.3
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEec
Q 025068 30 TYTKVFVGGLA-WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (258)
Q Consensus 30 ~~~~lfVgnLp-~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (258)
..++|||+||+ +++++++|+++|++||.|++|+|++++ ||||||+|.+.++|++||+.++ ..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 899999999999999999999998763 7999999999999999999865 6799999999999
Q ss_pred cCC
Q 025068 108 SLG 110 (258)
Q Consensus 108 ~~~ 110 (258)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 644
No 177
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=2.4e-15 Score=120.60 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCce--EEE
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR--ANC 104 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~--i~V 104 (258)
....++|||+||+.++++++|+++|++||.|++++++.++.+++++|+|||+|.+.++|++|++.++ ..|+|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 3456799999999999999999999999999999999999889999999999999999999999855 6799865 788
Q ss_pred Eec
Q 025068 105 NLA 107 (258)
Q Consensus 105 ~~a 107 (258)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=3.3e-15 Score=120.88 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccC---CceEEE
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID---GRRANC 104 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~---G~~i~V 104 (258)
...++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++ ..+. +++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 367899999999999999999999999999999999997 59999999999999999999999865 4444 499999
Q ss_pred Eecc
Q 025068 105 NLAS 108 (258)
Q Consensus 105 ~~a~ 108 (258)
++|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9983
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=4e-15 Score=112.87 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHHhcCCCEEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHhcCCC-CccCCce
Q 025068 29 TTYTKVFVGGLAW-----ETQSETMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (258)
Q Consensus 29 ~~~~~lfVgnLp~-----~~te~~L~~~F~~fG~I~~v~v~~d~~t-g~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (258)
...++|+|.||-. +-++++|+++|++||.|++|+|++++.+ ++++||+||+|.+.++|.+||+.++ ..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467899999953 2378999999999999999999998754 6899999999999999999999965 6799999
Q ss_pred EEEEecc
Q 025068 102 ANCNLAS 108 (258)
Q Consensus 102 i~V~~a~ 108 (258)
|+|+++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999985
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.6e-15 Score=109.77 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=61.9
Q ss_pred CcEEEEcCCCCCCcHHH----HHHHHhcC-CCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 31 YTKVFVGGLAWETQSET----MRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~----L~~~F~~f-G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
.+.|||+||++++++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|++.++ ..|.||.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 33499999999999998 55899999 599998 34 999999999999999999965 6799999999
Q ss_pred EeccCCC
Q 025068 105 NLASLGR 111 (258)
Q Consensus 105 ~~a~~~~ 111 (258)
++|+.++
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9996554
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=2.9e-15 Score=129.46 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Ccc
Q 025068 28 DTTYTKVFVGGLAWET---------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~---------te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 97 (258)
+...++|||+||+.++ +|++|+++|++||+|++|+|+.+ ||||||+|.+.++|++||+.++ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5578899999999998 79999999999999999999864 7899999999999999999865 557
Q ss_pred ------------CCceEEEEeccCCC
Q 025068 98 ------------DGRRANCNLASLGR 111 (258)
Q Consensus 98 ------------~G~~i~V~~a~~~~ 111 (258)
.|+.|.|++|....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=8e-16 Score=125.12 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEE
Q 025068 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (258)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (258)
.+....++|||+|||.++++++|+++|++||.|.. .++++..+++++|||||+|.+.++|++||+.++..|.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 34567889999999999999999999999998776 34555557899999999999999999999644467999999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++..+.
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 997544
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=3.1e-14 Score=124.63 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccC-CceEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRRANC 104 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-G~~i~V 104 (258)
.....++|||+||+.++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.++ ..|+ |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34467899999999999999999999999999999998764 5899999999999999999866 5688 999999
Q ss_pred Eecc
Q 025068 105 NLAS 108 (258)
Q Consensus 105 ~~a~ 108 (258)
++++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9984
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=9.4e-15 Score=128.54 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCC-CCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEE
Q 025068 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKN-TGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~-~te~~L~~~F~~fG~I~~v~v~~d~~-tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (258)
....++|||+||+.+ +++++|+++|++||.|++|+|+++.. |++++|||||+|.+.++|.+|| .++ ..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 445689999999999 99999999999999999999999886 6999999999999999999999 755 6699999999
Q ss_pred EeccCC
Q 025068 105 NLASLG 110 (258)
Q Consensus 105 ~~a~~~ 110 (258)
.++.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999654
No 185
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-14 Score=108.62 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCc-----------HHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Cc
Q 025068 29 TTYTKVFVGGLAWETQ-----------SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF 96 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~t-----------e~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~ 96 (258)
...++|+|.||-...+ +++|+++|++||.|++|.| .++ .++|||||+|.+.++|++||+.++ ..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999944432 6899999999999999955 554 379999999999999999998866 66
Q ss_pred cCCceEEEEeccCC
Q 025068 97 IDGRRANCNLASLG 110 (258)
Q Consensus 97 i~G~~i~V~~a~~~ 110 (258)
|+|+.|+|+++..+
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999999654
No 186
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=8.9e-15 Score=118.89 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+||+.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+||+.++ ..|+|+.|+|++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 4467899999999999999999999999988766 3478999999999999999999999855 679999999999
Q ss_pred ccCC
Q 025068 107 ASLG 110 (258)
Q Consensus 107 a~~~ 110 (258)
|..+
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9643
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.8e-14 Score=123.00 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEEEE
Q 025068 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCN 105 (258)
Q Consensus 28 ~~~~~~lfVgnLp~-~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V~ 105 (258)
....++|||+|||. ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.+ +..|.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34678999999999 99999999999999999999999875 789999999999999999874 467999999999
Q ss_pred eccCC
Q 025068 106 LASLG 110 (258)
Q Consensus 106 ~a~~~ 110 (258)
++..+
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99754
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=2.7e-14 Score=125.10 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
..++|||+|||.++++++|+++|++||.|.+++|++++.+++++|||||+|.+.++|.+||+.++ ..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999899999999999999999999998754 67999999999997
Q ss_pred CCC
Q 025068 109 LGR 111 (258)
Q Consensus 109 ~~~ 111 (258)
.+.
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 554
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=1.6e-14 Score=126.58 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCC-cHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 28 DTTYTKVFVGGLAWET-QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~-te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
....++|||+|||.++ ++++|+++|++||.|++|+|+++. +++++|+|||+|.+.++|.+||+.++ ..|+|+.|+|+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 4567899999999995 999999999999999999999997 69999999999999999999999855 67999999999
Q ss_pred eccCCCCCC
Q 025068 106 LASLGRPRP 114 (258)
Q Consensus 106 ~a~~~~~~~ 114 (258)
++.++..++
T Consensus 260 ~a~~~~~~~ 268 (284)
T 3smz_A 260 FCAPGPPGR 268 (284)
T ss_dssp ECCSSSCHH
T ss_pred EecCCCccc
Confidence 997766543
No 190
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-13 Score=102.45 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=62.9
Q ss_pred CcEEEEcCCC-------CCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEE
Q 025068 31 YTKVFVGGLA-------WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (258)
Q Consensus 31 ~~~lfVgnLp-------~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (258)
.++|-|.-.. .++++++|+++|++||.|++|.|+ +++||||||+|.+.++|++||+.+ ..+.++.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEE
Confidence 4466665433 468999999999999999999987 467999999999999999999984 347899999
Q ss_pred EEeccCCCC
Q 025068 104 CNLASLGRP 112 (258)
Q Consensus 104 V~~a~~~~~ 112 (258)
|+++..+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999965543
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=2.4e-14 Score=118.84 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCccCCceEEEEec
Q 025068 30 TYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (258)
Q Consensus 30 ~~~~lfVgnLp~-~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~i~G~~i~V~~a 107 (258)
..++|||+|||. ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998875 789999999999999999974 46799999999999
Q ss_pred cCCC
Q 025068 108 SLGR 111 (258)
Q Consensus 108 ~~~~ 111 (258)
..+.
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7543
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.49 E-value=6.2e-14 Score=123.26 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceE
Q 025068 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (258)
Q Consensus 23 ~~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i 102 (258)
..+..+...++|||+|||.++++++|+++|++||.|.+|+|++++.+ ++|||||+|.+.++|++||+.++..|+|+.|
T Consensus 33 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 110 (292)
T 2ghp_A 33 EALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEI 110 (292)
T ss_dssp ---------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEEC
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEE
Confidence 34455677899999999999999999999999999999999998743 5899999999999999999755577999999
Q ss_pred EEEec
Q 025068 103 NCNLA 107 (258)
Q Consensus 103 ~V~~a 107 (258)
.|.++
T Consensus 111 ~v~~~ 115 (292)
T 2ghp_A 111 IVSHL 115 (292)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99987
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=8.2e-14 Score=112.53 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~f----G-------~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~ 98 (258)
+.++|||+|||.++++++|+++|++| | .|.++++. +++|||||+|.+.++|++||+.++..|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 46899999999999999999999999 6 77777764 3478999999999999999944557799
Q ss_pred CceEEEEeccCC
Q 025068 99 GRRANCNLASLG 110 (258)
Q Consensus 99 G~~i~V~~a~~~ 110 (258)
|+.|+|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987644
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=4.5e-14 Score=122.91 Aligned_cols=80 Identities=28% Similarity=0.321 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC-CCc-cC---CceEEEE
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPF-ID---GRRANCN 105 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~~~-i~---G~~i~V~ 105 (258)
.++|||+||+.++|+++|+++|++||.|++|+|+.|. +++++|||||+|.+.++|.+||+.+ +.. +. ++.|.|+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 5789999999999999999999999999999999995 7999999999999999999999996 433 33 9999999
Q ss_pred eccCCC
Q 025068 106 LASLGR 111 (258)
Q Consensus 106 ~a~~~~ 111 (258)
++....
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 997543
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=1e-13 Score=114.41 Aligned_cols=77 Identities=19% Similarity=0.402 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~f----G-------~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~ 98 (258)
..++|||+|||.++++++|+++|++| | .|.++++ ++++|||||+|.+.++|++||+.++..|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 5666655 45689999999999999999943456799
Q ss_pred CceEEEEeccCCCC
Q 025068 99 GRRANCNLASLGRP 112 (258)
Q Consensus 99 G~~i~V~~a~~~~~ 112 (258)
|+.|+|.++.....
T Consensus 77 g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 77 GQSLKIRRPHDYQP 90 (198)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CceEEEeCCCCCCC
Confidence 99999999865543
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=6.6e-14 Score=106.07 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=68.2
Q ss_pred CCCcEEEEcCC--CCCCc--------HHHHHHHHhcCCCEEEEEEeecCCC--CCcccEEEEEEcCHHHHHHHhcCCC-C
Q 025068 29 TTYTKVFVGGL--AWETQ--------SETMRRYFEQFGEILEAVVITDKNT--GRSKGYGFVTFREPEAARRACADPT-P 95 (258)
Q Consensus 29 ~~~~~lfVgnL--p~~~t--------e~~L~~~F~~fG~I~~v~v~~d~~t--g~skG~aFV~F~~~~~A~~Ai~~~~-~ 95 (258)
..++.|.|.|+ +.++. +++|++.|++||.|++|+|++++.+ ++++|++||+|.+.++|++||+.++ .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 33443 3689999999999999999998764 4689999999999999999999966 6
Q ss_pred ccCCceEEEEecc
Q 025068 96 FIDGRRANCNLAS 108 (258)
Q Consensus 96 ~i~G~~i~V~~a~ 108 (258)
.++||.|+|+++.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 6999999999874
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.47 E-value=3.3e-14 Score=120.05 Aligned_cols=76 Identities=11% Similarity=0.078 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCE--EEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCc----eE
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEI--LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR----RA 102 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I--~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~----~i 102 (258)
..++|||+|||+++|+++|+++|++||.| ++++|+.++ ++++|+|||+|.+.++|.+||..++ .+|+|+ ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45789999999999999999999999999 899998885 5667999999999999999999966 557776 56
Q ss_pred EEEec
Q 025068 103 NCNLA 107 (258)
Q Consensus 103 ~V~~a 107 (258)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66665
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=1.6e-14 Score=109.21 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=62.3
Q ss_pred EcCCCCCCcHHHHHHHH------------hcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceE
Q 025068 36 VGGLAWETQSETMRRYF------------EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (258)
Q Consensus 36 VgnLp~~~te~~L~~~F------------~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (258)
+.+|++++++++|++.| ++||.|++|+|++++. +++||||||+|.+.++|++|++.++ ..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777788888777766 9999999999999874 8999999999999999999999865 67999999
Q ss_pred EEEec
Q 025068 103 NCNLA 107 (258)
Q Consensus 103 ~V~~a 107 (258)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=1.7e-13 Score=119.23 Aligned_cols=76 Identities=28% Similarity=0.489 Sum_probs=68.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEe
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (258)
....++|||+|||.++|+++|+++|++||.|.+|+|.++ +|||||+|.+.++|++||+.++ ..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345679999999999999999999999999999999654 6899999999999999999754 679999999999
Q ss_pred ccC
Q 025068 107 ASL 109 (258)
Q Consensus 107 a~~ 109 (258)
+..
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.44 E-value=3.6e-13 Score=114.87 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccC-CceEEEEe
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRRANCNL 106 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-G~~i~V~~ 106 (258)
..++|||+||+.++++++|+++|++|| .|++|+|+.+ .+|+|||+|.+.++|++||+.++ ..|+ |+.|+|++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999999653 36899999999999999999855 6788 99999999
Q ss_pred ccC
Q 025068 107 ASL 109 (258)
Q Consensus 107 a~~ 109 (258)
+++
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 964
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.8e-13 Score=113.52 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC-CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccC-CceEEEEe
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRRANCNL 106 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-G~~i~V~~ 106 (258)
..++|||+||+.++++++|+++|++|| .|++|+|+.+. +|+|||+|.+.++|.+||+.++ ..|+ |+.|+|++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 99999997642 7899999999999999999855 6688 99999999
Q ss_pred ccC
Q 025068 107 ASL 109 (258)
Q Consensus 107 a~~ 109 (258)
+++
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 854
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=2.6e-13 Score=105.04 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCC--C---CcHHHHHHHHhcCCCEEEEEEeecCC----CCCcccEEEEEEcCHHHHHHHhcCCC-CccCC
Q 025068 30 TYTKVFVGGLAW--E---TQSETMRRYFEQFGEILEAVVITDKN----TGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (258)
Q Consensus 30 ~~~~lfVgnLp~--~---~te~~L~~~F~~fG~I~~v~v~~d~~----tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G 99 (258)
.++.|+|.|+-. + -.+++|++.|++||.|++|+|++++. +++++|++||+|.+.++|.+||+.++ ..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999832 2 24689999999999999999999864 46788999999999999999999966 66999
Q ss_pred ceEEEEecc
Q 025068 100 RRANCNLAS 108 (258)
Q Consensus 100 ~~i~V~~a~ 108 (258)
|.|+|+++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.35 E-value=1.5e-12 Score=118.00 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=62.7
Q ss_pred CCCCcEEEEcC--CCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-Ccc---CCc-
Q 025068 28 DTTYTKVFVGG--LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI---DGR- 100 (258)
Q Consensus 28 ~~~~~~lfVgn--Lp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i---~G~- 100 (258)
+...++|||+| |+.++||++|+++|++||+|++|.+.. +||||||+|++.++|++||+.+| .++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 588999999999999999999987643 47899999999999999999976 444 345
Q ss_pred -eEEEEecc
Q 025068 101 -RANCNLAS 108 (258)
Q Consensus 101 -~i~V~~a~ 108 (258)
.|+|+++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57888773
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.7e-11 Score=92.47 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=71.1
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcC-HHHHHHHhcCCC--
Q 025068 19 FQYLNSPFGDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE-PEAARRACADPT-- 94 (258)
Q Consensus 19 ~~~~~~p~~~~~~~~lfVgnLp~~-~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~-~~~A~~Ai~~~~-- 94 (258)
+++......-...+.|+|+||+.+ +++++|+++|++||+|..|+++++.. .|||+|.+ .++|.+||+.++
T Consensus 6 ~~~~~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~ 79 (121)
T 1owx_A 6 HHHHHGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNG 79 (121)
T ss_dssp ---CCCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTS
T ss_pred cccccCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcC
Confidence 345566677788999999999999 99999999999999999999998865 59999999 889999998853
Q ss_pred -CccCCceEEEEecc
Q 025068 95 -PFIDGRRANCNLAS 108 (258)
Q Consensus 95 -~~i~G~~i~V~~a~ 108 (258)
.+|++..+.+++..
T Consensus 80 ~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 80 NLQLRNKEVTWEVLE 94 (121)
T ss_dssp CBCTTSSSEEEEECC
T ss_pred CcEEeCcEEEEEECC
Confidence 45999999887663
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=2.5e-11 Score=93.23 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCC----------cHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccC
Q 025068 30 TYTKVFVGGLAWET----------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (258)
Q Consensus 30 ~~~~lfVgnLp~~~----------te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~ 98 (258)
.++.|.|.|+=..- .+++|++.|++||.|++|.|.++. .+|++||+|.+.++|++||+.++ ..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35677888772211 235789999999999999987653 58999999999999999999966 6699
Q ss_pred CceEEEEecc
Q 025068 99 GRRANCNLAS 108 (258)
Q Consensus 99 G~~i~V~~a~ 108 (258)
||.|+|+++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999985
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=5.5e-10 Score=81.75 Aligned_cols=71 Identities=23% Similarity=0.188 Sum_probs=58.2
Q ss_pred CcEEEEcCCC----CCCcH----HHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceE
Q 025068 31 YTKVFVGGLA----WETQS----ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (258)
Q Consensus 31 ~~~lfVgnLp----~~~te----~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i 102 (258)
.-+|+|.-++ .++-+ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+||+.++..|+||.|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 4467777665 23333 5799999999999999999884 899999999999999944467999999
Q ss_pred EEEeccC
Q 025068 103 NCNLASL 109 (258)
Q Consensus 103 ~V~~a~~ 109 (258)
+|+++++
T Consensus 79 kV~lkt~ 85 (91)
T 2dnr_A 79 TIALKSP 85 (91)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999864
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.85 E-value=3.8e-09 Score=89.36 Aligned_cols=67 Identities=13% Similarity=0.238 Sum_probs=58.8
Q ss_pred CCcHHHHHHHHhcCCCEEEEEEeecCC----CCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEEecc
Q 025068 42 ETQSETMRRYFEQFGEILEAVVITDKN----TGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (258)
Q Consensus 42 ~~te~~L~~~F~~fG~I~~v~v~~d~~----tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (258)
+-.+++|++.|++||.|++++|+++.. +++++|++||+|.+.++|++||+.++ ..++||.|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 346788999999999999999986643 45899999999999999999999966 66999999999974
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=5.1e-09 Score=77.02 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=58.1
Q ss_pred CcEEEEcCCCCC-----C-cH---HHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCce
Q 025068 31 YTKVFVGGLAWE-----T-QS---ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRR 101 (258)
Q Consensus 31 ~~~lfVgnLp~~-----~-te---~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~ 101 (258)
.-+|+|.-++.+ + ++ .+|.+.|+.||+|..++++.|+ +||+|.+.++|.+||+.++..|+||.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 558889877642 2 22 4689999999999999999984 89999999999999994447799999
Q ss_pred EEEEecc
Q 025068 102 ANCNLAS 108 (258)
Q Consensus 102 i~V~~a~ 108 (258)
|+|++..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.5e-06 Score=65.42 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=64.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcC-----CCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC-CCCccCCce
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFEQF-----GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRR 101 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~f-----G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~-~~~~i~G~~ 101 (258)
++..++|-|-|||+.++++.|+.+++++ |.|+.+.++.|.. -|+|+|.|...|-||.-. ++.+|+||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4457788889999999999999999999 9999999988864 799999999999888866 557799999
Q ss_pred EEEEec
Q 025068 102 ANCNLA 107 (258)
Q Consensus 102 i~V~~a 107 (258)
|+|.-.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 999754
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.1e-05 Score=60.03 Aligned_cols=76 Identities=29% Similarity=0.319 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhc-----CCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEE
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQ-----FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~-----fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (258)
-++|.|.|||.+++++.|+-+|++ -|+|++++... +-|+|+|.+.+.|++.|+...+.|.+..|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 468999999999999999999987 26888887643 37899999999999999998899999999998
Q ss_pred eccCCCCCC
Q 025068 106 LASLGRPRP 114 (258)
Q Consensus 106 ~a~~~~~~~ 114 (258)
....+.+++
T Consensus 80 P~~~~~~~r 88 (104)
T 2dhx_A 80 PAPPRAPAR 88 (104)
T ss_dssp ECCCCCCCC
T ss_pred cCCCCCcce
Confidence 776555443
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00023 Score=53.01 Aligned_cols=74 Identities=9% Similarity=0.032 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCC-c----HHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCc-cCCceEE
Q 025068 30 TYTKVFVGGLAWET-Q----SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRAN 103 (258)
Q Consensus 30 ~~~~lfVgnLp~~~-t----e~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~ 103 (258)
-.++|+|.||+.++ + .+.++++|..|+++......+.-. -..|.|.+.++|.+|-.+++.+ ++|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998865 2 256799999999999888877642 5689999999999999998755 9999999
Q ss_pred EEeccC
Q 025068 104 CNLASL 109 (258)
Q Consensus 104 V~~a~~ 109 (258)
|-++..
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999963
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.45 E-value=0.00047 Score=50.68 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=45.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (258)
..+.++| ++|.++...||.++|+.||. ..|+++.|- .|||.|.+++.|..|+..
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 3455666 99999999999999999994 457788774 799999999999998875
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.00074 Score=51.55 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=58.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCC-ceEEEE
Q 025068 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDG-RRANCN 105 (258)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G-~~i~V~ 105 (258)
+....+-|.|-+.+.+. .+.|.+.|++||+|.+...... ..+-.|.|+++.+|++||.+++..|++ -.|-|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 34457789999999985 5667788999999998876211 248899999999999999998888875 556666
Q ss_pred ec
Q 025068 106 LA 107 (258)
Q Consensus 106 ~a 107 (258)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.10 E-value=0.00063 Score=50.14 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=45.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (258)
.+.++| ++|.++...||.++|+.|| -..|+++.|- .|||.|.+++.|..|+..
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 345566 9999999999999999999 5568888874 799999999999998884
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.80 E-value=0.0046 Score=44.94 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=51.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCC--cccEEEEEEcCHHHHHHHhcC-CCCc
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR--SKGYGFVTFREPEAARRACAD-PTPF 96 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~--skG~aFV~F~~~~~A~~Ai~~-~~~~ 96 (258)
++|-|++||..+||+++.+.++...++.-...+..+.+.+ .-.-|+|.|.+.|++....+. .++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 6899999999999999999999988877666666553332 225789999999999888877 4444
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.20 E-value=0.0022 Score=59.94 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (258)
..++|||. ++.++++++|.++|++||.|.++..-+++ | -|+.|+|.+.+++.+++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhcc
Confidence 45789997 79999999999999999999998776543 2 59999999999999888764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.10 E-value=0.0067 Score=46.93 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEE-EEEeecC--------CCC-----CcccEEEEEEcCHHHHHHHhcCCCCc
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDK--------NTG-----RSKGYGFVTFREPEAARRACADPTPF 96 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~-v~v~~d~--------~tg-----~skG~aFV~F~~~~~A~~Ai~~~~~~ 96 (258)
..-|.|=+.|.+.+ ..+.+.|++||.|.+ ..+.++. .+. ....+-.|+|++..+|.+||.+++..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 34577778877754 567778999999976 2221100 000 12457899999999999999999999
Q ss_pred cCCceEEEEecc
Q 025068 97 IDGRRANCNLAS 108 (258)
Q Consensus 97 i~G~~i~V~~a~ 108 (258)
|+|..|-|...+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888774
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.17 E-value=0.017 Score=45.21 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=28.1
Q ss_pred EEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 60 EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 60 ~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
.++|+++. .+++||+||+|.+.++|++||+.++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhc
Confidence 46788885 4799999999999999999997743
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.56 E-value=0.0087 Score=46.67 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=34.7
Q ss_pred CCCcccEEEEEEcCHHHHHHHhcCC-C-CccCCceEEEEeccC
Q 025068 69 TGRSKGYGFVTFREPEAARRACADP-T-PFIDGRRANCNLASL 109 (258)
Q Consensus 69 tg~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~G~~i~V~~a~~ 109 (258)
..+.+|+++|+|.+.++|++||+.+ + ..|+| .|.+..+..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3577899999999999999999887 6 66999 999998754
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.96 E-value=0.034 Score=40.71 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=44.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCC-C-cccEEEEEEcCHHHHHHHhcCCC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG-R-SKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg-~-skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
.-+|.|+.||+.+||+++.+.++..-++.-...+..+.+- . .-.-|+|.|++.|+...-.+..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 4589999999999999999888776554332222222221 1 12568999999999988887743
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.52 E-value=0.94 Score=42.61 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=44.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (258)
....++|+ ++..+...+|.++|+.||. .+|+++.|. .+||.|.+.+.|..++...
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 34566665 8899999999999999995 456666653 6999999999999888763
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=63.45 E-value=20 Score=23.85 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=38.3
Q ss_pred EEEEc-CCCCCCcHHHHHHHHhcCCC-----EEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC-CccCCceEEEE
Q 025068 33 KVFVG-GLAWETQSETMRRYFEQFGE-----ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (258)
Q Consensus 33 ~lfVg-nLp~~~te~~L~~~F~~fG~-----I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (258)
+|||. +--..++..+|..++..-+. |-.++|..+ |.||+.... .+.++++.+. ..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45554 22345677778887776543 455666333 789988653 4666676654 56899999998
Q ss_pred ecc
Q 025068 106 LAS 108 (258)
Q Consensus 106 ~a~ 108 (258)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 763
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=60.95 E-value=1.8 Score=31.70 Aligned_cols=19 Identities=11% Similarity=0.315 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCCCcHHH
Q 025068 29 TTYTKVFVGGLAWETQSET 47 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~ 47 (258)
...++|||+||+.++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 4456899999999999874
No 224
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.48 E-value=49 Score=22.94 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=38.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHhcCCC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACADPT 94 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~-~~~~A~~Ai~~~~ 94 (258)
.+|.|. +.=.-....|++.+.+.-.|.++.+-... +-+.|++. +.++..++|+..+
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~~G 77 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEGTG 77 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHTTT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHHhC
Confidence 356666 65555567789999888778888775442 24566664 5667777887754
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=48.85 E-value=37 Score=21.76 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=43.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
..++.|.++.=.--...|++.+.+ -.|..+.+-.. .+-+.|+|.+.++..++|+..+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 457889999888888999999999 88888877433 3456788876777778887654
No 226
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=45.16 E-value=88 Score=22.88 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=41.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHh-------cCCCEEEEEEeecCCC-CCcccE--E-EEEEcCHHHHHHHhcC
Q 025068 28 DTTYTKVFVGGLAWETQSETMRRYFE-------QFGEILEAVVITDKNT-GRSKGY--G-FVTFREPEAARRACAD 92 (258)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~-------~fG~I~~v~v~~d~~t-g~skG~--a-FV~F~~~~~A~~Ai~~ 92 (258)
..-.+.|.+-.|..+++++++.++.+ +.-.|+++.+-++... +..++| + .++|+|.++.+.-...
T Consensus 18 ~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~h 93 (121)
T 3bb5_A 18 QGMLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAVH 93 (121)
T ss_dssp -CCEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHHS
T ss_pred CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHcC
Confidence 33445555557999988886555553 3667888888777532 344554 4 4589998887665543
No 227
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=44.33 E-value=83 Score=22.37 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=44.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC
Q 025068 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (258)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (258)
..+|-|-|-|+|..+-+.++.-.....|----|+.+. |-|.+.|.+.++..-||..
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHH
Confidence 3578888999999999998877777777655666543 3689999999998888875
No 228
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=41.03 E-value=75 Score=23.08 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=42.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhc-------CCCEEEEEEeecCCCCCcccE--E-EEEEcCHHHHHHHhc
Q 025068 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQ-------FGEILEAVVITDKNTGRSKGY--G-FVTFREPEAARRACA 91 (258)
Q Consensus 24 ~p~~~~~~~~lfVgnLp~~~te~~L~~~F~~-------fG~I~~v~v~~d~~tg~skG~--a-FV~F~~~~~A~~Ai~ 91 (258)
.+....-.+.|.+-.|..+++++++.++.+. .-.|+++.+-++.. +..+|| + .++|+|.++.+.-..
T Consensus 15 ~~~~~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~~ 91 (116)
T 3bgu_A 15 LYFQGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQD 91 (116)
T ss_dssp CCCSSCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHhc
Confidence 3334444555555578889888876665543 45677888877754 444544 4 458888887765554
No 229
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=34.31 E-value=53 Score=23.06 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.2
Q ss_pred CEEEEEEeecCCCCCcccEEEEEEcC
Q 025068 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (258)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (258)
+|++|+|..-...++-|++|=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888877666568999999999975
No 230
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=34.19 E-value=59 Score=25.47 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=30.0
Q ss_pred CcHHHHHHHHhcCCCEE---EEEEeecCCCCCcccEEEEE
Q 025068 43 TQSETMRRYFEQFGEIL---EAVVITDKNTGRSKGYGFVT 79 (258)
Q Consensus 43 ~te~~L~~~F~~fG~I~---~v~v~~d~~tg~skG~aFV~ 79 (258)
.|+++|+++=.+.|++. ++.+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999885 66777775479999888763
No 231
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=33.20 E-value=1.2e+02 Score=21.03 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=25.6
Q ss_pred CEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 57 EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
+|.++.+.. ..+||-||+++..++...+|....
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 366665543 368999999999999999998854
No 232
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=32.43 E-value=7.4 Score=30.24 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEc
Q 025068 46 ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81 (258)
Q Consensus 46 ~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~ 81 (258)
+++.++|...|.|+.. ...|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf--------n~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF--------NVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE--------ETTTTEEEEEEE
T ss_pred CcccccccceeEEEEE--------ECCCCeeEEeeC
Confidence 4555566666655543 224789999876
No 233
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=38.05 E-value=9.8 Score=27.87 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=36.5
Q ss_pred CCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEE--EEEEcCHHHHHHHhcCCCCccC
Q 025068 39 LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG--FVTFREPEAARRACADPTPFID 98 (258)
Q Consensus 39 Lp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~a--FV~F~~~~~A~~Ai~~~~~~i~ 98 (258)
|-...++++|+++..+.+ +..+.+.+...+|+. .|. +=.|.+.++|.+|++.+...|.
T Consensus 30 L~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 30 LSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 344456677888777775 445555554333333 233 2378999999999999765543
No 234
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=30.58 E-value=82 Score=26.55 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=33.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCC
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (258)
..+.|+|||..++...|.++++. ..+.++.++. ..|.|++.+...+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~----------------QkEva~Rl~A~pg 156 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV----------------QKEVAERMTARPK 156 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE----------------EHHHHHHHTCCTT
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe----------------eeeeeeecccCCC
Confidence 46789999999999999999987 6665544433 3566777666543
No 235
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=29.60 E-value=68 Score=23.13 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.2
Q ss_pred CEEEEEEeecCCCCCcccEEEEEEcC
Q 025068 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (258)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (258)
+|++|+|..-...++-|++|=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888877666568999999999975
No 236
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.16 E-value=1e+02 Score=24.46 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=37.4
Q ss_pred EEEEcCCCC-C--------CcHHHHHHHH--hcCCCEEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHhcC
Q 025068 33 KVFVGGLAW-E--------TQSETMRRYF--EQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACAD 92 (258)
Q Consensus 33 ~lfVgnLp~-~--------~te~~L~~~F--~~fG~I~~v~v~~d~~tg~skG~aFV~F~-~~~~A~~Ai~~ 92 (258)
.+.|-|++. + .+..+|++.| +.|..++ |+.+.++ ..+.|++.|+|. |-.-...|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHH
Confidence 455666665 1 3446899977 8998765 5556664 457899999997 44455555543
No 237
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.53 E-value=74 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.8
Q ss_pred CEEEEEEeecCCCCCcccEEEEEEcC
Q 025068 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (258)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (258)
+|++|+|..-...++-|+||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57778776666568999999999975
No 238
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=26.56 E-value=63 Score=28.78 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=40.1
Q ss_pred EEEcCCCCCC----cHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCc
Q 025068 34 VFVGGLAWET----QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (258)
Q Consensus 34 lfVgnLp~~~----te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~ 100 (258)
-+||||..-. -...+.++..+||.|..+.+.. .-+|...+.+.++.++......+.++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 4688875432 2356778888999998887622 24677889999999997754444443
No 239
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=25.72 E-value=1.7e+02 Score=20.30 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=36.5
Q ss_pred EcCCCCCCcHHHHHHHHh-------cCCCEEEEEEeecCCCCCcccE--E-EEEEcCHHHHHHHhcC
Q 025068 36 VGGLAWETQSETMRRYFE-------QFGEILEAVVITDKNTGRSKGY--G-FVTFREPEAARRACAD 92 (258)
Q Consensus 36 VgnLp~~~te~~L~~~F~-------~fG~I~~v~v~~d~~tg~skG~--a-FV~F~~~~~A~~Ai~~ 92 (258)
+-.|..+++++++.++.+ +.-.|+++.+-++.. +..++| + .++|+|.++.+.-...
T Consensus 10 lfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y~~h 75 (103)
T 2qyc_A 10 MMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAYQVC 75 (103)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHHTTC
T ss_pred EEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHHhCC
Confidence 335778888776555443 366788888888764 444544 4 4588998887665443
No 240
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.20 E-value=63 Score=27.36 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=26.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEee
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVIT 65 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~ 65 (258)
..+.|+|||..++..-|.++++....+.++.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998655565554443
No 241
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=24.33 E-value=45 Score=24.17 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=43.9
Q ss_pred CCCCCCcHHHHHHHH-hcCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcCCCCccCCceEEEEecc
Q 025068 38 GLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (258)
Q Consensus 38 nLp~~~te~~L~~~F-~~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (258)
-++.-+.-++|..-. +.||.-.++....+ -..|-..+.++.++||+.++....-+.|+|-+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEec
Confidence 356677777765444 56898888777632 3578999999999999996644455556665543
No 242
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=24.03 E-value=1.2e+02 Score=21.80 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHhc-CC---CEEEE-EEeecCCCCCcccEEEEEEcCHHHHHHH
Q 025068 41 WETQSETMRRYFEQ-FG---EILEA-VVITDKNTGRSKGYGFVTFREPEAARRA 89 (258)
Q Consensus 41 ~~~te~~L~~~F~~-fG---~I~~v-~v~~d~~tg~skG~aFV~F~~~~~A~~A 89 (258)
..++..+|++.+.+ |+ ++..| .+.+.-..+++.|||.| |+|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788888888865 33 22233 34444444677788755 6676666554
No 243
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=23.63 E-value=30 Score=24.91 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHhc-CCCEEEEEEeecCC----CCCcccEEEEEEcCHHHHHH
Q 025068 41 WETQSETMRRYFEQ-FGEILEAVVITDKN----TGRSKGYGFVTFREPEAARR 88 (258)
Q Consensus 41 ~~~te~~L~~~F~~-fG~I~~v~v~~d~~----tg~skG~aFV~F~~~~~A~~ 88 (258)
..++..+|++-+.+ |+.-.++.++..-. .+++.|||.| |+|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35778888877765 33222333333322 3556677755 555555443
No 244
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=23.42 E-value=1.4e+02 Score=21.57 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHhc-CC---CEEEE-EEeecCCCCCcccEEEEEEcCHHHHHH
Q 025068 41 WETQSETMRRYFEQ-FG---EILEA-VVITDKNTGRSKGYGFVTFREPEAARR 88 (258)
Q Consensus 41 ~~~te~~L~~~F~~-fG---~I~~v-~v~~d~~tg~skG~aFV~F~~~~~A~~ 88 (258)
..++..+|++-+.+ |+ ++..| .+.+.-..+++.|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888888865 23 22233 34444445677788755 666666554
No 245
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=22.46 E-value=1.6e+02 Score=18.87 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=42.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHhcCCC
Q 025068 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR----EPEAARRACADPT 94 (258)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~aFV~F~----~~~~A~~Ai~~~~ 94 (258)
...+|.|.++.-......|++.+.+.-.|.++.+-.. .+-+.|+|. +.++..++|+..+
T Consensus 9 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 71 (84)
T 1q8l_A 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAMG 71 (84)
T ss_dssp EEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 3457889898887778889999999888888877433 236778885 3455666676654
No 246
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=22.42 E-value=1.3e+02 Score=21.78 Aligned_cols=47 Identities=9% Similarity=0.047 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHhc-CCC---EEEE-EEeecCCCCCcccEEEEEEcCHHHHHH
Q 025068 41 WETQSETMRRYFEQ-FGE---ILEA-VVITDKNTGRSKGYGFVTFREPEAARR 88 (258)
Q Consensus 41 ~~~te~~L~~~F~~-fG~---I~~v-~v~~d~~tg~skG~aFV~F~~~~~A~~ 88 (258)
..++..+|++-+.+ |+. +..| .+.+.-..+++.|||.| |+|.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35778888887765 332 2223 33334344677788865 677776665
No 247
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=21.81 E-value=49 Score=17.51 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=10.6
Q ss_pred cHHHHHHHHhcC
Q 025068 44 QSETMRRYFEQF 55 (258)
Q Consensus 44 te~~L~~~F~~f 55 (258)
.|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 588999999987
No 248
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=21.79 E-value=1.1e+02 Score=27.05 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=19.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc
Q 025068 32 TKVFVGGLAWETQSETMRRYFEQ 54 (258)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~ 54 (258)
..+.|+|||.+++..-|.++++.
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999999888874
No 249
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=21.71 E-value=1.5e+02 Score=24.08 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=22.8
Q ss_pred CcccEEEEEEcCHHHHHHHhcCCCCc
Q 025068 71 RSKGYGFVTFREPEAARRACADPTPF 96 (258)
Q Consensus 71 ~skG~aFV~F~~~~~A~~Ai~~~~~~ 96 (258)
.-|||-||+=.+..++.+||+.+.+.
T Consensus 147 ~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 147 NYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp TSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 36899999999999999999997654
No 250
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=21.59 E-value=1.7e+02 Score=21.21 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=37.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHh------cCCCEEEEEEeecCCC----CCcccE--E-EEEEcCHHHHHHHh
Q 025068 31 YTKVFVGGLAWETQSETMRRYFE------QFGEILEAVVITDKNT----GRSKGY--G-FVTFREPEAARRAC 90 (258)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~------~fG~I~~v~v~~d~~t----g~skG~--a-FV~F~~~~~A~~Ai 90 (258)
.+-|.+-.|..++++++++++.+ +.-.|+++.+-.+..+ +..+|| + .++|+|.++.+.-.
T Consensus 21 i~HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~Y~ 93 (120)
T 3bn7_A 21 LFHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKRYR 93 (120)
T ss_dssp EEEEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHHHh
Confidence 44444456888888887655544 3455677777776543 334544 4 45888888766544
No 251
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.01 E-value=77 Score=30.38 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=38.3
Q ss_pred CCCCCcHHHHHHHHh----cCCCEEEEEEeecCCCCCcccEEEEEEcCHHHHHHHhcC
Q 025068 39 LAWETQSETMRRYFE----QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (258)
Q Consensus 39 Lp~~~te~~L~~~F~----~fG~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (258)
...+.+--+|..+|. .+|.|+++.|...+. -..+..+++.|.|.++|.+++.+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~ 407 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLRE 407 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHH
Confidence 344445557888883 588999887755543 44556889999999999888765
Done!