Your job contains 1 sequence.
>025070
MASISSSSSLILSQQNLIFSKTHFTFQSRQPILQIRFPKLSYSLHNLKTASIEDSTTRLF
AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG
RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS
PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI
SSLNNSLLEGQRIRVNKA
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025070
(258 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 684 2.4e-67 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 341 5.4e-31 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 338 1.1e-30 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 288 2.2e-25 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 284 5.9e-25 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 266 4.8e-23 1
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 213 2.0e-17 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 219 4.7e-17 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 204 1.8e-16 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 210 4.3e-16 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 210 4.3e-16 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 210 4.3e-16 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 200 5.1e-16 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 210 5.1e-16 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 208 5.4e-16 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 204 5.8e-16 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 204 5.8e-16 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 204 5.8e-16 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 209 6.0e-16 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 208 6.2e-16 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 208 6.7e-16 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 208 7.0e-16 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 208 7.3e-16 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 208 7.3e-16 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 203 7.4e-16 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 208 7.6e-16 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 208 7.6e-16 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 203 8.0e-16 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 201 1.4e-15 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 201 1.4e-15 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 200 1.6e-15 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 195 1.6e-15 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 194 3.7e-15 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 196 3.9e-15 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 191 4.2e-15 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 191 4.2e-15 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 194 4.5e-15 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 194 5.1e-15 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 195 5.3e-15 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 194 6.3e-15 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 199 6.5e-15 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 194 8.8e-15 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 193 8.8e-15 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 193 9.2e-15 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 197 1.1e-14 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 195 1.2e-14 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 194 1.4e-14 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 196 1.4e-14 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 191 1.4e-14 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 194 1.6e-14 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 193 1.6e-14 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 194 1.6e-14 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 194 1.6e-14 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 194 1.7e-14 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 195 1.8e-14 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 194 1.8e-14 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 194 1.8e-14 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 194 1.8e-14 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 194 1.8e-14 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 193 2.4e-14 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 192 2.8e-14 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 192 2.8e-14 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 193 2.9e-14 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 193 2.9e-14 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 189 3.1e-14 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 191 4.2e-14 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 187 4.3e-14 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 191 4.4e-14 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 191 4.8e-14 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 191 4.8e-14 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 191 4.8e-14 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 191 4.8e-14 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 191 4.8e-14 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 191 4.9e-14 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 184 6.5e-14 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 186 6.9e-14 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 180 7.5e-14 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 179 7.9e-14 1
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 190 8.0e-14 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 184 8.3e-14 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 187 8.3e-14 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 184 8.5e-14 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 188 9.0e-14 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 184 1.0e-13 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 184 1.0e-13 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 188 1.0e-13 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 182 1.4e-13 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 186 1.6e-13 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 181 2.0e-13 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 182 2.1e-13 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 181 2.1e-13 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 185 2.1e-13 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 181 2.1e-13 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 185 2.1e-13 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 181 2.1e-13 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 181 2.1e-13 1
UNIPROTKB|H7BY49 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 174 2.7e-13 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 184 3.0e-13 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 179 3.3e-13 1
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 183 3.5e-13 1
WARNING: Descriptions of 884 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 148/247 (59%), Positives = 172/247 (69%)
Query: 16 NLIFSK-THFTFQSRQ-PILQIRFPKLSYS-LHNLKTASIEDSTTRLFAVAEETAXXXXX 72
N++ K T F+FQS L R S +L S TR A
Sbjct: 7 NVVSIKPTIFSFQSESFTPLHTRVNVFSSKPFPSLAGTFSRSSRTRFIPYAVTETEEKPA 66
Query: 73 XVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT 132
+D SE ARRVYIGNIPR + N++LTK+V+EHGAVEK +V+YDKY+GRSRRF F MK+
Sbjct: 67 ALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAK 191
VEDANAV+EKLNG + GREIKVNITEKP+ DLS+LQ+EDS FVDSPYKVYVGNLAK
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQ 251
TVT EML+ FSEKG+V+SAKV RVPGTSKS+GFGFVTF LNNSLLEGQ
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246
Query: 252 RIRVNKA 258
+IRVNKA
Sbjct: 247 KIRVNKA 253
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 70/179 (39%), Positives = 107/179 (59%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P I + EL++I E G V +++YDK T RSR F FV M ++E+A ++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 143 LNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSN--FVDSPYKVYVGNLAKTVTSEMLK 199
N ++IGGR +KVN E P + ++ + D+N +VDSP+KVY GNL +TS+ LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F ++ VL AKV+ T +S GFGF++F +N +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 145 (56.1 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 32/93 (34%), Positives = 53/93 (56%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
VD+P +VY GN+ N+ + L + V A+VIY++ TGRSR F F+ ++
Sbjct: 215 VDSP----HKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESA 270
Query: 134 EDANAVIEKLNGTEIGGREIKVNIT---EKPLV 163
E+ + + +NG E+ GR +++N+ EKP V
Sbjct: 271 ENVQSALATMNGVEVEGRALRLNLASEREKPTV 303
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 83/237 (35%), Positives = 126/237 (53%)
Query: 26 FQSRQPILQIRF--PK-LSYSLHNL-KTASIEDSTTRLFAVAEETAXXXXXXVDTPSEFA 81
+ S Q +L+ F PK L S + + + T + EE +D P+
Sbjct: 25 YSSNQTLLRFNFSTPKPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAAVN 84
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
++Y GN+P N+D+ L +I+Q+ E EV+Y++ TG+SR FAFV M VED N +I+
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
L+GTE GR +KVN +KP ++ + ++ +K++VGNL+ TVTSE L
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPN--------KEPLYPETEHKLFVGNLSWTVTSESLAGA 196
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F E G V+ A+V+ T +S G+GFV + L+ LEG+ IRVN A
Sbjct: 197 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 132 (51.5 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ + ++ L +E G V A V++D TGRSR + FV + +
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 139 VIEKLNGTEIGGREIKVNITE 159
+E L+G E+ GR I+VN+ +
Sbjct: 234 ALESLDGFELEGRAIRVNLAQ 254
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 67/189 (35%), Positives = 106/189 (56%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +V + A ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 143 LNGTEIGGREIKVNITEKPLVQVD------LSLLQAEDSNF-------VDSPYKVYVGNL 189
NG E+ GR ++VN P + D S + S + S +VYVGNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLE 249
+ V L+ FSE+G+V+ A+V+ + +S GFGFVT+ L+ + L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 250 GQRIRVNKA 258
G++IRV++A
Sbjct: 272 GRQIRVSEA 280
Score = 151 (58.2 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L + E G V +A VIYD+ +GRS+ F FV + ++ I+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR+I+V+ E
Sbjct: 265 LDGADLDGRQIRVSEAE 281
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 66/182 (36%), Positives = 99/182 (54%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ +++GN+P ++D+ L + ++ G VE +EVIY++ T +SR F FV M TVE+A
Sbjct: 109 PPEEAK-LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+EK N E+ GR + VN P D+ +++YVGNL V S
Sbjct: 168 EKAVEKFNSFEVNGRRLTVN-RAAPR-----GSRPERQPRVYDAAFRIYVGNLPWDVDSG 221
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L++ FSE G+V+ A+V+ T +S GFGFV L+ LEG+ I+VN
Sbjct: 222 RLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
Query: 257 KA 258
A
Sbjct: 282 VA 283
Score = 187 (70.9 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A R+Y+GN+P ++D+ L ++ EHG V A V+ D+ TGRSR F FV M + N I
Sbjct: 206 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Query: 141 EKLNGTEIGGREIKVNITEK 160
L+G + GR IKVN+ E+
Sbjct: 266 AALDGQNLEGRAIKVNVAEE 285
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 67/183 (36%), Positives = 103/183 (56%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PSE A+ +++GN+ ++++ L + ++ G VE AEVIY++ T +SR F FV M +V++A
Sbjct: 146 PSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAKTVTS 195
+EK N ++ GR + VN P + E + V P ++VYVGNL V +
Sbjct: 205 ETAVEKFNRYDLNGRLLTVN-KAAPRGS------RPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
L++ FSE G+V+ A+V+ T +S GFGFVT L+ LEG+ IRV
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 256 NKA 258
N A
Sbjct: 318 NVA 320
Score = 206 (77.6 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 301 AISALDGQNLEGRAIRVNVAEE 322
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 56/179 (31%), Positives = 92/179 (51%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIY-DKYTGRSRRFAFVMMKTVEDANAVIEK 142
+Y+ NIPR+ D +L + Q G V EV+ + TG SR +V M ++ A I
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 143 LNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFV--DSPYKVYVGNLAKTVTSEML 198
L+GTE+GGRE++V ++ P + + +L + + +S +KVYVGNL + L
Sbjct: 170 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 229
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
+ FS+ G ++S +VL T ++ F F++F N + EG+RI V +
Sbjct: 230 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNGTQYEGRRIIVRE 287
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E +VY+GN+P D L + G + V++D+ TGR+R FAF+ + E+ +A
Sbjct: 210 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 269
Query: 139 VIEKLNGTEIGGREIKV 155
+ NGT+ GR I V
Sbjct: 270 ALS-FNGTQYEGRRIIV 285
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 219 (82.2 bits), Expect = 4.7e-17, P = 4.7e-17
Identities = 60/183 (32%), Positives = 92/183 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D+ L ++ ++G +V+ D TG+SR F FV + EDAN
Sbjct: 190 EFTN-VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANK 247
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NGTE+ G+ + V +K + Q +L L Q S + +Y+ NL T
Sbjct: 248 AVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 305
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 306 IDDEKLRKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 363
Query: 253 IRV 255
+ V
Sbjct: 364 LYV 366
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 51/176 (28%), Positives = 87/176 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T + A+ IEK+
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKM 159
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + ++ E +N VY+ N + + LK+ F
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTN-------VYIKNFGDDMDDQRLKELF 212
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P T KS GFGFV++ +N + L G+ + V +A
Sbjct: 213 DKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA 267
Score = 130 (50.8 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ +I L + G V V D T RS +A+V + DA ++ +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + G+ I++ +++ D SL ++ N V++ NL K++ ++ L FS
Sbjct: 74 NFDVVKGKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFS 121
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G+ FV F +N LL +++ V +
Sbjct: 122 AFGNILSCKV--VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGR 173
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 58/183 (31%), Positives = 92/183 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L ++ ++G +V+ D TG+S+ F FV + EDAN
Sbjct: 189 EFTN-VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG +I G+ + V +K + Q +L L Q S + +Y+ NL T
Sbjct: 247 AVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRY--QGVNLYIKNLDDT 304
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 253 IRV 255
+ V
Sbjct: 363 LYV 365
Score = 192 (72.6 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 54/176 (30%), Positives = 87/176 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ P T KS GFGFV+F +N + G+ + V +A
Sbjct: 212 SKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 130 (50.8 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G V V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D SL ++ N V++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G+ FV F +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGR 172
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 59/183 (32%), Positives = 90/183 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN
Sbjct: 189 EFTN-VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG EI G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 247 AVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 304
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 253 IRV 255
+ V
Sbjct: 363 LYV 365
Score = 199 (75.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 56/176 (31%), Positives = 89/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 131 (51.2 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G V V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D SL ++ N V++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G+ FV F +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 210 (79.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 59/183 (32%), Positives = 90/183 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN
Sbjct: 189 EFTN-VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG EI G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 247 AVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 304
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 253 IRV 255
+ V
Sbjct: 363 LYV 365
Score = 198 (74.8 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 56/176 (31%), Positives = 89/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 131 (51.2 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G V V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D SL ++ N V++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G+ FV F +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 200 (75.5 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 67/251 (26%), Positives = 119/251 (47%)
Query: 18 IFSKTHFTFQSRQPILQIRFPKLSYSLHNLKTASIEDSTTRLFAVA-----------EET 66
+FSK + + L +R P + +L++ S D++ RL +V EET
Sbjct: 24 LFSKRSSSL--KLTALSLRIPSNLSPVFSLRSGS--DNSRRLVSVLCSVAEKETSADEET 79
Query: 67 AXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
+ S R++++ N+P ++ ++++++ + G V E+I K G++R FA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFA 138
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNIT---EKPLVQVDLSLLQAEDSNFVDSPYK 183
FV M + E+A A I+K + ++ GR I V+ +KP + L D+ +K
Sbjct: 139 FVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPG---DTRHK 195
Query: 184 VYVGNLAKTVTSEMLKKCFSEKG-QVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXX 242
+YV NLA S L++ F+ +SA+V+ +SSG+GFV+F
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255
Query: 243 LNNSLLEGQRI 253
LN + G+ I
Sbjct: 256 LNGKEIMGRPI 266
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 210 (79.0 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 59/183 (32%), Positives = 90/183 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN
Sbjct: 229 EFTN-VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANK 286
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG EI G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 287 AVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 344
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 345 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 402
Query: 253 IRV 255
+ V
Sbjct: 403 LYV 405
Score = 199 (75.1 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 56/176 (31%), Positives = 89/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E A+ IEK+
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 198
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 199 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 251
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ +N + G+ I V +A
Sbjct: 252 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 306
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 208 (78.3 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 59/183 (32%), Positives = 89/183 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN
Sbjct: 91 EFTN-VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANK 148
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG EI G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 149 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 206
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 207 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 264
Query: 253 IRV 255
+ V
Sbjct: 265 LYV 267
Score = 198 (74.8 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 56/176 (31%), Positives = 88/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E A+ IEK+
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 60
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 113
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ +N + G+ I V +A
Sbjct: 114 SQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 168
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 204 (76.9 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 167 (63.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 44/179 (24%), Positives = 82/179 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G++ I +++ G + A V+ D TG+S+ + FV DA I+++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTS 195
G +GGR+I+ N T KP + + L ++ SP VY G + +T
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+++++ FS GQ++ +V P G+ FV F +N + +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVF--P----DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 204 (76.9 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 169 (64.5 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 44/179 (24%), Positives = 82/179 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G++ I +++ G + A V+ D TG+S+ + FV DA I+++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTS 195
G +GGR+I+ N T KP + + L ++ SP VY G + +T
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+++++ FS GQ++ +V P G+ FV F +N + +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVF--P----DKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 204 (76.9 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 167 (63.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 44/179 (24%), Positives = 82/179 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G++ I +++ G + A V+ D TG+S+ + FV DA I+++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTS 195
G +GGR+I+ N T KP + + L ++ SP VY G + +T
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+++++ FS GQ++ +V P G+ FV F +N + +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVF--P----DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 209 (78.6 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 58/177 (32%), Positives = 90/177 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ +DEL ++G++ A V+ D G+SR F FV + EDA +E L
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 285
Query: 144 NGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPY---KVYVGNLAKTVTSEMLK 199
NG + +E V +K +++LS + S+ + + +YV NL TVT E L+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 200 KCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ F+E G + S KV+R P GTSK SGF V F +N ++ G+ + V
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGF--VAFSAASEASRVLNEMNGKMVGGKPLYV 400
Score = 185 (70.2 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 52/175 (29%), Positives = 82/175 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ +++DN L + G + +V D + G+SR + FV T + A IEKL
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + ++I V P ++ + A+ F + VYV NL++ T + LK F
Sbjct: 195 NGKVLNDKQIFVG----PFLRKEERESAADKMKFTN----VYVKNLSEATTDDELKTTFG 246
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G + SA V+R G KS FGFV F LN + + V KA
Sbjct: 247 QYGSISSAVVMR-DGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Score = 142 (55.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 44/172 (25%), Positives = 78/172 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ N+ + +L E V V D T S + +V +DA ++KL
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + + G+ I++ + + D S ++ N ++V NL K+V ++ L + FS
Sbjct: 108 NYSYLNGKMIRITYSSR-----DSSARRSGVGN-------LFVKNLDKSVDNKTLHEAFS 155
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G ++S KV +S G+GFV F LN +L ++I V
Sbjct: 156 GCGTIVSCKVA-TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 208 (78.3 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 58/183 (31%), Positives = 90/183 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN
Sbjct: 118 EFTN-VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANK 175
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 176 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 233
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 234 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 291
Query: 253 IRV 255
+ V
Sbjct: 292 LYV 294
Score = 194 (73.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 55/176 (31%), Positives = 88/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E AN IEK+
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKM 87
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E L++ F
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLRELF 140
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ +N + G+ I V +A
Sbjct: 141 SQFGKTLSVKVMR-DCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA 195
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 208 (78.3 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 59/183 (32%), Positives = 89/183 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN
Sbjct: 189 EFTN-VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG EI G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 304
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 253 IRV 255
+ V
Sbjct: 363 LYV 365
Score = 198 (74.8 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 56/176 (31%), Positives = 88/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 131 (51.2 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G V V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D SL ++ N V++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G+ FV F +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 208 (78.3 bits), Expect = 7.0e-16, P = 7.0e-16
Identities = 58/183 (31%), Positives = 90/183 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN
Sbjct: 189 EFTN-VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 247 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 304
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 253 IRV 255
+ V
Sbjct: 363 LYV 365
Score = 194 (73.4 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 55/176 (31%), Positives = 88/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E AN IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E L++ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLRELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMR-DCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 131 (51.2 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G V V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D SL ++ N V++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G+ FV F +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGR 172
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 208 (78.3 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 59/183 (32%), Positives = 89/183 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN
Sbjct: 189 EFTN-VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG EI G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 304
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 253 IRV 255
+ V
Sbjct: 363 LYV 365
Score = 198 (74.8 bits), Expect = 8.7e-15, P = 8.7e-15
Identities = 56/176 (31%), Positives = 88/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 131 (51.2 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G V V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D SL ++ N V++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G+ FV F +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 208 (78.3 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 59/183 (32%), Positives = 90/183 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN
Sbjct: 189 EFTN-VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG EI G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 247 AVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 304
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 253 IRV 255
+ V
Sbjct: 363 LYV 365
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 56/176 (31%), Positives = 89/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA 266
Score = 131 (51.2 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G V V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D SL ++ N V++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G+ FV F +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 203 (76.5 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 167 (63.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 44/179 (24%), Positives = 82/179 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G++ I +++ G + A V+ D TG+S+ + FV DA I+++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTS 195
G +GGR+I+ N T KP + + L ++ SP VY G + +T
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+++++ FS GQ++ +V P G+ FV F +N + +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVF--P----DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 208 (78.3 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 58/183 (31%), Positives = 90/183 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN
Sbjct: 189 EFTN-VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS-----LLQAEDSNFVDSPYKVYVGNLAKT 192
+E++NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T
Sbjct: 247 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDT 304
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+ E L+K FS G + SAKV+ G SK GFGFV F +N ++ +
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 253 IRV 255
+ V
Sbjct: 363 LYV 365
Score = 194 (73.4 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 55/176 (31%), Positives = 88/176 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ G S+ +AFV +T E AN IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E L++ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLRELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMR-DCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 131 (51.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G V V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D SL ++ N V++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G+ FV F +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGR 172
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 208 (78.3 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 56/178 (31%), Positives = 86/178 (48%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+TP+ VY+ N+P+ I DEL K + G + A V+ D+ +G SR F FV + E
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTE 280
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVD---LSLLQAEDSNFVDSP-YKVYVGNLA 190
A + +EK+NG +G + V +K + + Q + F S +Y+ NL
Sbjct: 281 AAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLD 340
Query: 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
+V E LK+ FSE G V S+KV+ P S GFGFV + +N ++
Sbjct: 341 DSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMI 397
Score = 165 (63.1 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 51/176 (28%), Positives = 80/176 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L + G + +V D TGRS+ + FV + E A A I+KL
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY-KVYVGNLAKTVTSEMLKKCF 202
NG + +++ V ++ +A D N + VYV NL K + + L+K F
Sbjct: 197 NGMLMNDKQVFVG----HFIRRQE---RARDENTPTPRFTNVYVKNLPKEIGEDELRKTF 249
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G + SA V+R + S FGFV F +N L + V +A
Sbjct: 250 GKFGVISSAVVMR-DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 39/172 (22%), Positives = 74/172 (43%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y G++ + L + + V V D+ RS +A++ DA +E L
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + R I++ ++ + + S + +++ NL ++ ++ L + FS
Sbjct: 110 NYTPLFDRPIRIMLSNR------------DPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV + T +S G+GFV F LN L+ +++ V
Sbjct: 158 SFGTILSCKVA-MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 203 (76.5 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 167 (63.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 44/179 (24%), Positives = 82/179 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G++ I +++ G + A V+ D TG+S+ + FV DA I+++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTS 195
G +GGR+I+ N T KP + + L ++ SP VY G + +T
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+++++ FS GQ++ +V P G+ FV F +N + +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVF--P----DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 201 (75.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 55/196 (28%), Positives = 92/196 (46%)
Query: 64 EETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
EE+A +E +++G + NID+ L + + G V A VI ++ TG+SR
Sbjct: 150 EESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSR 209
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLS--LLQAEDSNFVDS 180
+ +V ++ A +E++ G EI GR I +++ T KP + Q DS S
Sbjct: 210 GYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPS 269
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXX 240
+++GNL+ + L F E G V+S +V P T + GFG+V F
Sbjct: 270 D-TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAAL 328
Query: 241 XXLNNSLLEGQRIRVN 256
+N +EG+ R++
Sbjct: 329 EAMNGEYIEGRPCRLD 344
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 201 (75.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 55/196 (28%), Positives = 92/196 (46%)
Query: 64 EETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
EE+A +E +++G + NID+ L + + G V A VI ++ TG+SR
Sbjct: 150 EESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSR 209
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLS--LLQAEDSNFVDS 180
+ +V ++ A +E++ G EI GR I +++ T KP + Q DS S
Sbjct: 210 GYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPS 269
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXX 240
+++GNL+ + L F E G V+S +V P T + GFG+V F
Sbjct: 270 D-TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAAL 328
Query: 241 XXLNNSLLEGQRIRVN 256
+N +EG+ R++
Sbjct: 329 EAMNGEYIEGRPCRLD 344
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 200 (75.5 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 49/178 (27%), Positives = 88/178 (49%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ +Y+GN+ R++ + ++ + G + ++I D T + + FV A A +
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 142 KLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E +K
Sbjct: 61 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 120
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F + L G++IR N A
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 178
Score = 167 (63.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 43/179 (24%), Positives = 82/179 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G++ I +++ G + A V+ D TG+S+ + FV DA I+++
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 144 NGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTS 195
G +GGR+I+ N T KP + + L ++ SP VY G + +T
Sbjct: 164 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 223
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+++++ FS GQ++ +V P G+ F+ F +N + +EG ++
Sbjct: 224 QLMRQTFSPFGQIMEIRVF--P----DKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 276
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 50/180 (27%), Positives = 90/180 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 154 (59.3 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 41/154 (26%), Positives = 74/154 (48%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 90 DTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 147
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYV 186
DA I+++ G +GGR+I+ N T KP + + L ++ SP VY
Sbjct: 148 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYC 207
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS 220
G + +T +++++ FS GQ++ +V G S
Sbjct: 208 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS 241
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 194 (73.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 172 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 227
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 228 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 284
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 196 (74.1 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 52/185 (28%), Positives = 90/185 (48%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+ P+EF VYI N ++D++ L + ++G +V+ D +G+S+RF FV + +
Sbjct: 184 EKPAEFTN-VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHK 241
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLL--QAEDSNF-VDSPYKVYVGNLA 190
A +E +NG +I G+ I V +K + Q +L + Q + K+Y+ NL
Sbjct: 242 AAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLD 301
Query: 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
T+ E L+K FS G + KV++ G SK GFG + F +N +L
Sbjct: 302 DTIDDETLRKEFSVFGSICRVKVMQEAGQSK--GFGLICFFSPEAAAKAMAEMNGRILGS 359
Query: 251 QRIRV 255
+ + +
Sbjct: 360 KPLNI 364
Score = 157 (60.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 50/176 (28%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L + G + ++V+ D+ G S+ + FV + A+ IE++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDE-EG-SKGYGFVHYQDQRAADRAIEEM 157
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + + V + + +L AE +N VY+ N + E L+ F
Sbjct: 158 NGKLLRDSTLFVARFKSRKDREAELREKPAEFTN-------VYIKNFGDDMDDESLRSVF 210
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ GQ LS KV++ + KS FGFV+F +N + GQ I V +A
Sbjct: 211 SKYGQTLSVKVMK-DASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRA 265
Score = 127 (49.8 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 43/175 (24%), Positives = 80/175 (45%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A +Y+G++ ++ D L + G V + D + RS + +V V DA +
Sbjct: 9 AASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKAL 68
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E +N I G+ I++ +++ D L ++ N V++ NL K++ ++ L +
Sbjct: 69 ETMNFDLIKGKSIRLMWSQR-----DACLRKSGIGN-------VFIKNLDKSIDNKTLYE 116
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
FS G+++S+KV+ SK G+GFV + +N LL + V
Sbjct: 117 HFSPFGKIMSSKVMTDEEGSK--GYGFVHYQDQRAADRAIEEMNGKLLRDSTLFV 169
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/177 (27%), Positives = 89/177 (50%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ +Y+GN+ R++ + ++ + G + ++I D T + + FV A A +
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 61 AMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKAA 110
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F + L G++IR N A
Sbjct: 111 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 167
Score = 154 (59.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 41/154 (26%), Positives = 74/154 (48%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 86 DTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 143
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYV 186
DA I+++ G +GGR+I+ N T KP + + L ++ SP VY
Sbjct: 144 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYC 203
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS 220
G + +T +++++ FS GQ++ +V G S
Sbjct: 204 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS 237
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 22 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 79
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 80 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 139
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 140 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 191
Score = 109 (43.4 bits), Expect = 0.00055, P = 0.00055
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
VY+ N + + E LK F + G LS KV+ + KS GFGFV+F +
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 244 NNSLLEGQRIRVNKA 258
N L G++I V +A
Sbjct: 85 NGKELNGKQIYVGRA 99
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 194 (73.4 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 128 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 187
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 188 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 243
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 244 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 300
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 194 (73.4 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 53/156 (33%), Positives = 83/156 (53%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFPN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L + + Y+V YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
E L+K FS G + SAKV+ G SK GFGFV F
Sbjct: 307 DERLRKAFSPFGTITSAKVMMEGGRSK--GFGFVCF 340
Score = 177 (67.4 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 51/176 (28%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ G S+ + FV +T E A I+K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 43/182 (23%), Positives = 82/182 (45%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + + D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 195 (73.7 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 50/180 (27%), Positives = 90/180 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 173 (66.0 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 46/188 (24%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 90 DTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 147
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYV 186
DA I+++ G +GGR+I+ N T KP + + L ++ SP VY
Sbjct: 148 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYC 207
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G + +T +++++ FS GQ++ +V P G+ F+ F +N +
Sbjct: 208 GGVTSGLTEQLMRQTFSPFGQIMEIRVF--P----DKGYSFIRFSSHESAAHAIVSVNGT 261
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 262 TIEGHVVK 269
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 194 (73.4 bits), Expect = 6.3e-15, P = 6.3e-15
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 147 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 202
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 203 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 199 (75.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 60/180 (33%), Positives = 91/180 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +D+L E+G + A V+ D G+S+ F FV + +DA +E L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275
Query: 144 NGTEIG------GREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG + GR K + E L V+ + +L +A D F S +YV NL +++ E
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADK-FQSS--NLYVKNLDPSISDE 332
Query: 197 MLKKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
LK+ FS G V S+KV+R P GTSK SGF V F L+ ++E + + V
Sbjct: 333 KLKEIFSPFGTVTSSKVMRDPNGTSKGSGF--VAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 191 (72.3 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 54/179 (30%), Positives = 83/179 (46%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++I N+ +ID+ L G + +V D +G+S+ + FV E A I
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY-KVYVGNLAKTVTSEMLK 199
EKLNG + +++ V P ++ Q DS + + VYV NLA++ T + LK
Sbjct: 182 EKLNGMLLNDKQVYVG----PFLR-----RQERDSTANKTKFTNVYVKNLAESTTDDDLK 232
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F E G++ SA V++ G KS GFGFV F LN + + V +A
Sbjct: 233 NAFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290
Score = 150 (57.9 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 45/181 (24%), Positives = 84/181 (46%)
Query: 76 TPSEFARR-VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
T ++F +Y+G++ N+ + +L + G V V D T RS + +V +
Sbjct: 29 TATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQ 88
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
DA I++LN + G+ I+V + + D S+ ++ N +++ NL +++
Sbjct: 89 DAARAIQELNYIPLYGKPIRVMYSHR-----DPSVRRSGAGN-------IFIKNLDESID 136
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+ L FS G ++S KV V + +S G+GFV + LN LL +++
Sbjct: 137 HKALHDTFSSFGNIVSCKVA-VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVY 195
Query: 255 V 255
V
Sbjct: 196 V 196
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 194 (73.4 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 22 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 81
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 82 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 137
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 138 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 194
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 193 (73.0 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 50/177 (28%), Positives = 90/177 (50%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + +T + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSNDP-YCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F + L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 181 (68.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 92 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 149
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 150 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYC 209
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 210 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 263
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 264 TIEGHVVK 271
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 193 (73.0 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 50/177 (28%), Positives = 90/177 (50%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + +T + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSNDP-YCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F + L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 181 (68.8 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 92 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 149
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 150 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYC 209
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 210 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 263
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 264 TIEGHVVK 271
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 54/174 (31%), Positives = 87/174 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFPN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L + + Y+V YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/176 (28%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ G S+ + FV +T E A I+K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 43/182 (23%), Positives = 82/182 (45%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + + D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 195 (73.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 49/177 (27%), Positives = 86/177 (48%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ ++ + +K
Sbjct: 147 MNSVMLGGRNIKVG-RPGSIGQAQPIIEQLAEEARAYN---RIYVASIHPDLSDDDIKSV 202
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K GFGF+ + +N L GQ +RV KA
Sbjct: 203 FEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 60/212 (28%), Positives = 96/212 (45%)
Query: 48 KTASIEDSTTRLFAVAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGA 107
K A E + + A EE A + S+ +++GN+ N+D+ L + + G
Sbjct: 206 KPAKTEAPSKKRKAEEEEEAPAKKTKTEE-SDKPSTLFVGNLSWNVDDAMLAEEFKFCGT 264
Query: 108 VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVD 166
V A VI D+ +GRS+ F +V T E+A + G I GREIKV+ T K D
Sbjct: 265 VTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSND 324
Query: 167 LSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG 224
+ +A+ SP ++VGNL + + FSE +V S ++ + + G
Sbjct: 325 AAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKG 384
Query: 225 FGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
FG+VTF LN + G+ R++
Sbjct: 385 FGYVTFNSVEDAKSAFEQLNGQSINGRNCRLD 416
Score = 129 (50.5 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT S + +++GN+P + D D + E V+ + ++ +GR + F +V +VE
Sbjct: 335 DTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVE 394
Query: 135 DANAVIEKLNGTEIGGREIKVNI-TEKP 161
DA + E+LNG I GR +++ T +P
Sbjct: 395 DAKSAFEQLNGQSINGRNCRLDYSTPRP 422
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 196 (74.1 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 56/174 (32%), Positives = 84/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D+D+L I ++G V+ D+ G+SR F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQR 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G+ I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMDGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 49/176 (27%), Positives = 82/176 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + + LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDDKLKDIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G +S +V+ KS GFGFV+F +N + G+ I V +A
Sbjct: 212 SKYGNAMSIRVM-TDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRA 266
Score = 146 (56.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 46/181 (25%), Positives = 84/181 (46%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ +++ L + GA+ V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I GR +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGRPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 191 (72.3 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 49/180 (27%), Positives = 90/180 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A +
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAS 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 177 (67.4 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 48/188 (25%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 90 DTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 147
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYV 186
DA I+++ G +GGR+I+ N T KP + + L +D SP VY
Sbjct: 148 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYC 207
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G + +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 208 GGVTSGLTEQLMRQTFSPFGQIMEIRVF--P----DKGYSFVRFNSHESAAHAIVSVNGT 261
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 262 TIEGHVVK 269
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 153 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 208
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 209 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 265
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 53/174 (30%), Positives = 86/174 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 21 EFTN-VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 78
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 79 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 138
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 139 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 190
Score = 111 (44.1 bits), Expect = 0.00095, P = 0.00095
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
VY+ N + + E LK+ F + G LS KV+ + KS GFGFV+F +
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 244 NNSLLEGQRIRVNKA 258
N L G++I V +A
Sbjct: 84 NGKELNGKQIYVGRA 98
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 161 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 216
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 217 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 161 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 216
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 217 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 194 (73.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 174 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 229
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 230 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 286
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 59/181 (32%), Positives = 87/181 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L +I G +V+ D +TGRS+ F FV + E+A
Sbjct: 189 EFTN-VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVT 194
+ +NG EI GR + V +K L Q +L + S Y+ +YV NL +
Sbjct: 247 AVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
E L+K FS G + SAKV+ G SK GFGFV F +N ++ + +
Sbjct: 307 DERLRKEFSPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 255 V 255
V
Sbjct: 365 V 365
Score = 157 (60.3 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 48/176 (27%), Positives = 79/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D+ G SR FV +T E A I+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE-NG-SRGHGFVHFETQEAATRAIQTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + + E +N VY+ N + L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTN-------VYIKNFGDDMDDNRLREIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S G+ LS KV+ + T +S GFGFV F +N + G+ + V +A
Sbjct: 212 SRFGKTLSVKVM-MDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRA 266
Score = 115 (45.5 bits), Expect = 0.00050, P = 0.00050
Identities = 40/172 (23%), Positives = 76/172 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D + RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR +++ +++ D L ++ N V++ NL ++ ++ L FS
Sbjct: 73 NFEVIKGRPVRIMWSQR-----DPGLRKSGVGN-------VFIKNLDDSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV V + S G GFV F +N LL +++ V
Sbjct: 121 AFGNILSCKV--VCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFV 170
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 190 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 245
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 246 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 191 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 246
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 247 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 303
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 195 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 250
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 251 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 48/177 (27%), Positives = 87/177 (49%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ + ++ + +K
Sbjct: 195 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHQDLSDDDIKSV 250
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 251 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 193 (73.0 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 53/174 (30%), Positives = 86/174 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 125 EFTN-VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 182
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 183 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 242
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 243 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 294
Score = 181 (68.8 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 52/176 (29%), Positives = 84/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 94
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 147
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 148 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 202
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 192 (72.6 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 55/179 (30%), Positives = 88/179 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +D L + ++G V V+ D GRSR F FV E+A +E L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESL 262
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY----KVYVGNLAKTVTSEMLK 199
G ++G +++ V K + ++ L Q NF+ P +YV NL++++ L+
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREM-LKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLR 321
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ F GQ++SAKV+ +S GFGFV F LN L++G+ I V A
Sbjct: 322 EIFGCYGQIVSAKVM-CHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Score = 158 (60.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 42/174 (24%), Positives = 87/174 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ +L + V + + TG+S +A++ + A+ + +L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N +++ G+ +++ +++ DL+ + + F + +YV NL ++TS L++ F
Sbjct: 83 NHSDLKGKAMRIMWSQR-----DLAYRRRTRTGFAN----LYVKNLDSSITSSCLERMFC 133
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV+ G SK GFGFV F L+ S++ G+++ V K
Sbjct: 134 PFGSILSCKVVEENGQSK--GFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAK 185
Score = 154 (59.3 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 53/183 (28%), Positives = 86/183 (46%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
T + FA +Y+ N+ +I + L ++ G++ +V+ + G+S+ F FV T +
Sbjct: 107 TRTGFAN-LYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQS 163
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A + L+G+ + G+++ V + D A + DS VYV NL +TVT
Sbjct: 164 AVSARSALHGSMVYGKKLFV----AKFINKDERAAMAGNQ---DST-NVYVKNLIETVTD 215
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ L FS+ G V S V+R G +S GFGFV F L L +++ V
Sbjct: 216 DCLHTLFSQYGTVSSVVVMR-DGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274
Query: 256 NKA 258
KA
Sbjct: 275 GKA 277
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 192 (72.6 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 48/177 (27%), Positives = 86/177 (48%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 153
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +GGR IKV + Q + Q AE++ + ++YV ++ ++ + +K
Sbjct: 154 MNSVMLGGRNIKVGRPSN-IGQAQPIIDQLAEEARAFN---RIYVASVHPDLSDDDIKSV 209
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G++ S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 210 FEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKA 266
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 193 (73.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 53/174 (30%), Positives = 86/174 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 181 (68.8 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 52/176 (29%), Positives = 84/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 193 (73.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 53/174 (30%), Positives = 86/174 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 181 (68.8 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 52/176 (29%), Positives = 84/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 189 (71.6 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 51/183 (27%), Positives = 90/183 (49%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S+ R +Y+GN+ + D + + + G+V K +VI+D G + +AFV A+
Sbjct: 42 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQAS 98
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTS 195
++ +N + RE+KVN +P + + +D+ + V+VG+L+ V +
Sbjct: 99 QALQTMNKRLLLDREMKVNWAVEP----------GQQQSKIDTTRHFHVFVGDLSSEVDN 148
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ L++ F G V AKV+R T+KS G+GFV++ +N L + IR
Sbjct: 149 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT 208
Query: 256 NKA 258
N A
Sbjct: 209 NWA 211
Score = 187 (70.9 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 53/187 (28%), Positives = 90/187 (48%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
+DT F V++G++ +DN +L + Q G V A+VI D T +S+ + FV
Sbjct: 129 IDTTRHF--HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKR 186
Query: 134 EDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVG 187
E+A IE++NG +G R I+ N T KP Q S + + + + VYVG
Sbjct: 187 EEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVG 246
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSL 247
N+A ++T + +++ F+ G++ ++ K G+ FV F +NN
Sbjct: 247 NIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQMNNQD 299
Query: 248 LEGQRIR 254
+ GQ +R
Sbjct: 300 VGGQLVR 306
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 191 (72.3 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 144 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 201
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 202 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 261
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 262 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 313
Score = 179 (68.1 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 113
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 114 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 166
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 167 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 221
Score = 113 (44.8 bits), Expect = 0.00077, P = 0.00077
Identities = 36/139 (25%), Positives = 66/139 (47%)
Query: 119 TGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFV 178
T RS +A+V + DA ++ +N I G+ +++ +++ D SL ++ N
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-- 55
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXX 238
+++ NL K++ ++ L FS G +LS KV V + S G+GFV F
Sbjct: 56 -----IFIKNLDKSIDNKALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAER 108
Query: 239 XXXXLNNSLLEGQRIRVNK 257
+N LL +++ V +
Sbjct: 109 AIEKMNGMLLNDRKVFVGR 127
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 187 (70.9 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 52/176 (29%), Positives = 86/176 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N +ID+++L K+ E+G E +VI D TG+S+ F FV +T E A + +L
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLEL 259
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS--P--YKVYVGNLAKTVTSEMLK 199
+G I G+ + V +K + ++ + E D P +Y+ NL +T+ E LK
Sbjct: 260 HGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLK 319
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ FS G + AKV+ G K GFG V F +N ++ + + V
Sbjct: 320 EEFSLFGSISRAKVMMEVGQGK--GFGVVCFSSFEEASKAVNEMNGRVVGSKTLHV 373
Score = 173 (66.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 49/175 (28%), Positives = 83/175 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L + G + +V+ D G S+ +A+V ++ AN I +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V + P + + + + F + V+V N + E LKK FS
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTN----VFVKNFGDDIDDEKLKKLFS 220
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
E G S KV+R T KS GFGFV + L+ ++G+ + V +A
Sbjct: 221 EYGPTESVKVIR-DATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRA 274
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 191 (72.3 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 157 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 214
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 215 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 274
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 275 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 326
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 47/157 (29%), Positives = 74/157 (47%)
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKP 161
Q ++ K+ V+ D+ G S+ + FV +T E A IEK+NG + R++ V +
Sbjct: 88 QRDPSLRKSGVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 145
Query: 162 LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK 221
+ +L E +N VY+ N + + E LK F + G LS KV+ + K
Sbjct: 146 EREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGK 197
Query: 222 SSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S GFGFV+F +N L G++I V +A
Sbjct: 198 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 234
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 179 (68.1 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 179 (68.1 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 179 (68.1 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 179 (68.1 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 179 (68.1 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 131 (51.2 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 44/181 (24%), Positives = 81/181 (44%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ + L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 191 (72.3 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 179 (68.1 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 184 (69.8 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 47/177 (26%), Positives = 90/177 (50%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I D TG + FV A A +
Sbjct: 9 RTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDT-TGNDP-YCFVEFYENRHAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+++KVN P Q + + SN + V+VG+L+ ++++ ++
Sbjct: 67 AMNGRKILGKDMKVNWASTPSSQ------KKDTSNH----FHVFVGDLSPEISTDDVRAA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GF++F +N L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWA 173
Score = 183 (69.5 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 49/189 (25%), Positives = 87/189 (46%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I D++ G + A V+ D TG+S+ + F+
Sbjct: 92 DTSNHF--HVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKW 149
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLVQ------VDLSLLQAEDSNFVDSPYK--VY 185
DA + I+++NG +GGR+I+ N T KP L E+ SP VY
Sbjct: 150 DAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVY 209
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNN 245
G +A ++ +++++ FS GQ++ +V P G+ FV F +N
Sbjct: 210 CGGIASGLSDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFDSHEGAAHAIVSVNG 263
Query: 246 SLLEGQRIR 254
+ +EG ++
Sbjct: 264 TCIEGHTVK 272
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 186 (70.5 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 47/178 (26%), Positives = 89/178 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP D + F D+P + +++GNL+ + +
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAI 283
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V F L ++ + +R++
Sbjct: 284 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341
Score = 120 (47.3 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ N D D + ++ +HG V + T + + F +V +E
Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 319
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA ++ L G I R ++++ +
Sbjct: 320 DAKKALDALQGEYIDNRPVRLDFS 343
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 180 (68.4 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 53/174 (30%), Positives = 84/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 61 EFTN-VYIKNFGEDMDDERLKDLF---GPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 115
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 116 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 175
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 176 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 227
Score = 134 (52.2 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 42/138 (30%), Positives = 63/138 (45%)
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDS 180
S+ + FV +T E A IEK+NG + R++ V + + +L E +N
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN---- 64
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXX 240
VY+ N + + E LK F G LS KV+ + KS GFGFV+F
Sbjct: 65 ---VYIKNFGEDMDDERLKDLF---GPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAV 117
Query: 241 XXLNNSLLEGQRIRVNKA 258
+N L G++I V +A
Sbjct: 118 DEMNGKELNGKQIYVGRA 135
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 53/178 (29%), Positives = 88/178 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ NI +ID+++L ++ E+G E +VI D +G+S+ F FV +T E A + L
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 144 NGTEIGGREIKVNITEKPLVQV-DLS-----LLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G I G+ + V +K + ++ +L L E S P +Y+ NL +T+ E
Sbjct: 96 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETINDEK 153
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
LK+ FS G + AKV+ G K GFG V F +N ++ + + V
Sbjct: 154 LKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
Score = 107 (42.7 bits), Expect = 0.00061, P = 0.00061
Identities = 30/116 (25%), Positives = 53/116 (45%)
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+NG + R++ V + P + + + + F + V+V N+ + E LK+ F
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTN----VFVKNIGDDIDDEKLKELF 55
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
E G S KV+R + KS GFGFV + L+ ++G+ + V +A
Sbjct: 56 CEYGPTESVKVIR-DASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 110
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 190 (71.9 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 50/180 (27%), Positives = 85/180 (47%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I I D L + G ++ + +D TG + FAFV + E A E
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAE---DSNFVDSP--YKVYVGNLAKTVTSEM 197
+NG +GGR +KVN +++ ++ QA+ D D+ ++VYV ++ ++
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETD 222
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
LK F G+++ ++ R P GFG++ F +N L GQ +RV K
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGK 282
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 184 (69.8 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 109 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYC 226
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 227 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 281 TIEGHVVK 288
Score = 168 (64.2 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 53/192 (27%), Positives = 94/192 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAF-VMMKT------ 132
R +Y+GN+ R++ + ++ + G + ++I ++ R + F V+ T
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 133 -VE-----DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
VE DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 187 (70.9 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 59/212 (27%), Positives = 94/212 (44%)
Query: 50 ASIEDSTTRLFAVAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVE 109
+S ED R A E S V++G + N+D+ L + +E+G +
Sbjct: 231 SSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIV 290
Query: 110 KAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT-EIGGREIKVNITEKPLVQVDLS 168
A VI D +GRS+ + +V +T E A A + NGT EI GR + ++++ P
Sbjct: 291 GARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA-NGTKEIDGRMVNLDLSN-PRPANPQP 348
Query: 169 LLQAEDSNFVDS---PYK-VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG 224
Q NF D P V+VGNL+ T + L F G + S ++ P + + G
Sbjct: 349 YAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKG 408
Query: 225 FGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
FG+VTF +N + G+ R++
Sbjct: 409 FGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLD 439
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 184 (69.8 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 109 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYC 226
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 227 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 281 TIEGHVVK 288
Score = 168 (64.2 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 53/192 (27%), Positives = 94/192 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAF-VMMKT------ 132
R +Y+GN+ R++ + ++ + G + ++I ++ R + F V+ T
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 133 -VE-----DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
VE DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 188 (71.2 bits), Expect = 9.0e-14, P = 9.0e-14
Identities = 52/156 (33%), Positives = 81/156 (51%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G++I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
E L+K FS G + SAKV+ G SK GFGFV F
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCF 340
Score = 179 (68.1 bits), Expect = 8.4e-13, P = 8.4e-13
Identities = 52/176 (29%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 135 (52.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 44/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 109 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYC 226
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 227 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 281 TIEGHVVK 288
Score = 168 (64.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 53/192 (27%), Positives = 94/192 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAF-VMMKT------ 132
R +Y+GN+ R++ + ++ + G + ++I ++ R + F V+ T
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 133 -VE-----DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
VE DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 109 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYC 226
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 227 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 281 TIEGHVVK 288
Score = 168 (64.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 53/192 (27%), Positives = 94/192 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAF-VMMKT------ 132
R +Y+GN+ R++ + ++ + G + ++I ++ R + F V+ T
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 133 -VE-----DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
VE DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 188 (71.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 53/174 (30%), Positives = 84/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D++ L + ++GA +V+ D + G+SR F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++ +NG ++ G+ I V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K F+ G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFTPFGSITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 172 (65.6 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 51/176 (28%), Positives = 82/176 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A I+K+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIDKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKEWF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ KS GFGFV+F +N L G+ I V +A
Sbjct: 212 GQYGAALSVKVM-TDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA 266
Score = 135 (52.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 182 (69.1 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 51/182 (28%), Positives = 87/182 (47%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SEF VYI N ++D++ L + ++G +V+ D +G+S+ F FV + E A
Sbjct: 187 SEFTN-VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAK 244
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLL--QAEDSNFVDSP-YKVYVGNLAKTV 193
+E++NG +I G+ I V +K + Q +L + Q + K+Y+ NL T+
Sbjct: 245 KAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTI 304
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRI 253
E L+ FS G + KV++ G SK GFG + F +N +L + +
Sbjct: 305 DDEKLRNEFSSFGSISRVKVMQEEGQSK--GFGLICFSSPEDATKAMTEMNGRILGSKPL 362
Query: 254 RV 255
+
Sbjct: 363 SI 364
Score = 170 (64.9 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 53/176 (30%), Positives = 87/176 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L + G + ++V+ D G S+ +AFV + A+ IE++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEM 157
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSL-LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + G ++ V + + D L+++ S F + VY+ N + E LK F
Sbjct: 158 NGKLLKGCKVFVGRFKN---RKDREAELRSKASEFTN----VYIKNFGGDMDDERLKDVF 210
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ + KS GFGFV+F +N + GQ I V +A
Sbjct: 211 SKYGKTLSVKVM-TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Score = 140 (54.3 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 44/174 (25%), Positives = 84/174 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ D L + G V + D+ T RS +A+V + DA ++ +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D L ++ N V++ NL K++ ++ L + FS
Sbjct: 72 NFDIIKGKSIRLMWSQR-----DAYLRRSGIGN-------VFIKNLDKSIDNKTLYEHFS 119
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G++LS+KV+ SK G+ FV F +N LL+G ++ V +
Sbjct: 120 AFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGR 171
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 186 (70.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 58/182 (31%), Positives = 85/182 (46%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D+ L +I G +V+ D TGRSR F FV E+A
Sbjct: 189 EFTN-VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLSL----LQAEDSNFVDSPYKVYVGNLAKTV 193
+ ++NG E+ GR I V +K + Q +L ++ E N +YV NL +
Sbjct: 247 AVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGI 305
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRI 253
+ L+K FS G + SAKV+ G SK GFGFV F +N ++ + +
Sbjct: 306 DDDRLRKEFSPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 254 RV 255
V
Sbjct: 364 YV 365
Score = 167 (63.8 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 51/175 (29%), Positives = 84/175 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D++ G SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH-G-SRGYGFVHFETQEAANRAIQTM 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V K + +L A+ F + VY+ N + + + L++ FS
Sbjct: 159 NGMLLNDRKVFVGHF-KSRRERELEY-GAKVMEFTN----VYIKNFGEDMDDKRLREIFS 212
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G LS KV+ + T +S GFGFV + +N + G+ I V +A
Sbjct: 213 AFGNTLSVKVM-MDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266
Score = 123 (48.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 42/172 (24%), Positives = 77/172 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR I++ +++ D L ++ N V++ NL +++ ++ L FS
Sbjct: 73 NFEVIKGRPIRIMWSQR-----DPGLRKSGVGN-------VFIKNLDESIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV V S G+GFV F +N LL +++ V
Sbjct: 121 AFGNILSCKV--VCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 181 (68.8 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 48/180 (26%), Positives = 90/180 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 5 EQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAA 62
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T++ +
Sbjct: 63 SLAAMNGRKIMGKEVKVNWATSPSSQ------KKDTSNH----FHVFVGDLSPEITTDDI 112
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ F+ G++ A+V++ T KS G+GFV+F + L G++IR N A
Sbjct: 113 RAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 172
Score = 179 (68.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 49/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I D++ G + A V+ D TG+S+ + FV
Sbjct: 91 DTSNHF--HVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 148
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKP-----LVQVDLSLLQAEDSNFVDSPYK--VYV 186
DA I+++ G +GGR+I+ N T KP + + L ++ SP VY
Sbjct: 149 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYC 208
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G + +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 209 GGVTTGLTEQLMRQTFSPFGQIMEVRVF--P----DKGYSFVRFNSHESAAHAIVSVNGT 262
Query: 247 LLEGQRIR 254
LEG ++
Sbjct: 263 SLEGHIVK 270
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 182 (69.1 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 51/182 (28%), Positives = 87/182 (47%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SEF VYI N ++D++ L + ++G +V+ D +G+S+ F FV + E A
Sbjct: 245 SEFTN-VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAK 302
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLL--QAEDSNFVDSP-YKVYVGNLAKTV 193
+E++NG +I G+ I V +K + Q +L + Q + K+Y+ NL T+
Sbjct: 303 KAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTI 362
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRI 253
E L+ FS G + KV++ G SK GFG + F +N +L + +
Sbjct: 363 DDEKLRNEFSSFGSISRVKVMQEEGQSK--GFGLICFSSPEDATKAMTEMNGRILGSKPL 420
Query: 254 RV 255
+
Sbjct: 421 SI 422
Score = 170 (64.9 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 53/176 (30%), Positives = 87/176 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L + G + ++V+ D G S+ +AFV + A+ IE++
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEM 215
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSL-LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + G ++ V + + D L+++ S F + VY+ N + E LK F
Sbjct: 216 NGKLLKGCKVFVGRFKN---RKDREAELRSKASEFTN----VYIKNFGGDMDDERLKDVF 268
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ + KS GFGFV+F +N + GQ I V +A
Sbjct: 269 SKYGKTLSVKVM-TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 323
Score = 140 (54.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 44/174 (25%), Positives = 84/174 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ D L + G V + D+ T RS +A+V + DA ++ +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D L ++ N V++ NL K++ ++ L + FS
Sbjct: 130 NFDIIKGKSIRLMWSQR-----DAYLRRSGIGN-------VFIKNLDKSIDNKTLYEHFS 177
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G++LS+KV+ SK G+ FV F +N LL+G ++ V +
Sbjct: 178 AFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGR 229
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 108 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 165
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 166 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYC 225
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 226 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 279
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 280 TIEGHVVK 287
Score = 168 (64.2 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 53/192 (27%), Positives = 94/192 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAF-VMMKT------ 132
R +Y+GN+ R++ + ++ + G + ++I ++ R + F V+ T
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 67
Query: 133 -VE-----DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
VE DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 117
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 118 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 177
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 178 WLGGRQIRTNWA 189
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 185 (70.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 55/176 (31%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ IDN L G + +V D++ G+S+ F FV +T E A A IE +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENV 200
Query: 144 NGTEIGGREIKVNITEKPLVQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + RE+ V K + + D S + +NF + +YV N+ + E +K F
Sbjct: 201 NGMLLNDREVFVG---KHISKKDRESKFEEMKANFTN----IYVKNIDLNYSEESFEKLF 253
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S G++ S L KS GFGFV F LN+ + GQ+I V +A
Sbjct: 254 SPFGKITSI-YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRA 308
Score = 179 (68.1 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 51/176 (28%), Positives = 83/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ NI N + K+ G + + D+ G+S+ F FV + E A +E+L
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N EI G++I V +K +++ Q E + Y+ ++V NL T+ SE L+
Sbjct: 294 NDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLE 353
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ F G + SAKV+ V KS GFGFV F +N ++ G+ + V
Sbjct: 354 EEFKPFGTITSAKVM-VDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Score = 147 (56.8 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 52/213 (24%), Positives = 91/213 (42%)
Query: 46 NLKTASIEDSTTRLFAVAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEH 105
N+ + + E S A+++A +E + +Y+G + +++ L +I
Sbjct: 17 NIGSTTEEQSAAAATTTADQSAEEQGESSGV-AENSASLYVGELNPSVNEATLFEIFSPI 75
Query: 106 GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV 165
G V V D + +S +A+V ED IE+LN I GR ++ +++
Sbjct: 76 GQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQR----- 130
Query: 166 DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVP-GTSKSSG 224
D S ++ D N +++ NL + ++ L FS G++LS KV G SK
Sbjct: 131 DPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKC-- 181
Query: 225 FGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
FGFV + +N LL + + V K
Sbjct: 182 FGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 214
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 109 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYC 226
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 227 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 281 TIEGHVVK 288
Score = 168 (64.2 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 53/192 (27%), Positives = 94/192 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAF-VMMKT------ 132
R +Y+GN+ R++ + ++ + G + ++I ++ R + F V+ T
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 133 -VE-----DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
VE DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 185 (70.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D+++L +I ++G V+ D +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQR 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG E+ G+++ V +K Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLD 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 172 (65.6 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 48/176 (27%), Positives = 84/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + ++ E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTN-------VYIKNFGEDMDDEKLKEIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS +V+ + KS GFGFV+F +N + G+++ V +A
Sbjct: 212 CKYGPALSIRVM-TDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRA 266
Score = 138 (53.6 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 45/181 (24%), Positives = 82/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I GR +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGRPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 109 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYC 226
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 227 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 281 TIEGHVVK 288
Score = 168 (64.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 53/192 (27%), Positives = 94/192 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAF-VMMKT------ 132
R +Y+GN+ R++ + ++ + G + ++I ++ R + F V+ T
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 133 -VE-----DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
VE DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 109 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 166
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKPLV-----QVDLSLLQAEDSNFVDSPYK--VYV 186
DA I + G +GGR+I+ N T KP + + L+ ED SP VY
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYC 226
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G +A +T +++++ FS GQ++ +V P G+ FV F +N +
Sbjct: 227 GGIASGLTDQLMRQTFSPFGQIMEIRVF--P----EKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 247 LLEGQRIR 254
+EG ++
Sbjct: 281 TIEGHVVK 288
Score = 168 (64.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 53/192 (27%), Positives = 94/192 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAF-VMMKT------ 132
R +Y+GN+ R++ + ++ + G + ++I ++ R + F V+ T
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 133 -VE-----DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
VE DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 43/146 (29%), Positives = 78/146 (53%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +N
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+
Sbjct: 60 GRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKAAFAP 109
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTF 230
G++ A+V++ T KS G+GFV+F
Sbjct: 110 FGRISDARVVKDMATGKSKGYGFVSF 135
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 184 (69.8 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 53/175 (30%), Positives = 81/175 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++ID+ L + G + +V D +G+S+ + FV T E A I+KL
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + +++ V P V LQ + S VYV NL+++++ E L K F
Sbjct: 194 NGMLLNDKQVYVG----PFVHK----LQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFG 245
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
E G S ++R G KS GFGFV F LN + + V KA
Sbjct: 246 EFGVTTSCVIMR-DGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Score = 172 (65.6 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 46/170 (27%), Positives = 82/170 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ ++ ++EL K+ E G ++ D G+S+ F FV + +DA ++ L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 284
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEML 198
NG +E V +K + + L Q + + ++ K +YV NL ++VT + L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSER-ETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
++ F+ G + S KV+R P + S G GFV F +N ++
Sbjct: 344 REHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
Score = 160 (61.4 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 46/172 (26%), Positives = 82/172 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + + +L + + G V V D T RS + +V T +DA+ + +L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + GR I+V + + D SL ++ N +++ NL K++ + L + FS
Sbjct: 107 NFMALNGRAIRVMYSVR-----DPSLRKSGVGN-------IFIKNLDKSIDHKALHETFS 154
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV P + +S G+GFV + LN LL +++ V
Sbjct: 155 AFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 179 (68.1 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 53/178 (29%), Positives = 88/178 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ NI +ID+++L ++ E+G E +VI D +G+S+ F FV +T E A + L
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 144 NGTEIGGREIKVNITEKPLVQV-DLS-----LLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G I G+ + V +K + ++ +L L E S P +Y+ NL +T+ E
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETINDEK 317
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
LK+ FS G + AKV+ G K GFG V F +N ++ + + V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
Score = 163 (62.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/175 (26%), Positives = 83/175 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L + G + +V+ D G S+ +A+V ++ AN I +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V + P + + + + F + V+V N+ + E LK+ F
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTN----VFVKNIGDDIDDEKLKELFC 220
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
E G S KV+R + KS GFGFV + L+ ++G+ + V +A
Sbjct: 221 EYGPTESVKVIR-DASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 46/177 (25%), Positives = 82/177 (46%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + G ++ + +D T + + FAFV + E A +E+
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 143 LNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +GGR IKV + P Q + +Q E +F ++YV ++ ++ E +K
Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSF----NRIYVASIHPDLSEEDIKSV 246
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G +L K+ + G+GF+ + +N L GQ +RV ++
Sbjct: 247 FEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 53/176 (30%), Positives = 85/176 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ R+ID+ L G + +V+ D+ G S+ + FV +T E+A IEK+
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEEAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + Q +L E +N VY+ NL + + E L+ F
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTN-------VYIKNLGEDMDDERLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S G LS KV+ + KS GFGFV+F +N L G++I V +A
Sbjct: 212 SRFGPALSVKVM-TDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRA 266
Score = 173 (66.0 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 52/184 (28%), Positives = 86/184 (46%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N+ ++D++ L + G +V+ D+ +G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS----LLQAEDSNFVDSPY---------KV 184
++++NG ++ G++I V +K + Q +L ++ + P +
Sbjct: 247 AVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNL 306
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLN 244
YV NL + E L+K FS G + SAKV G SK GFGFV F +N
Sbjct: 307 YVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSK--GFGFVCFSSPEEATKAVTEMN 364
Query: 245 NSLL 248
++
Sbjct: 365 GRIV 368
Score = 139 (54.0 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 45/181 (24%), Positives = 83/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D+ T RS +A V + +EDA
Sbjct: 6 PSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N ++V NL +++ S+
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDRSIDSK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N L +++ V
Sbjct: 114 TLYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 167 (63.8 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 42/137 (30%), Positives = 76/137 (55%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ NI + +DE + +++G V + + D+ TG+SR F FV + EDA+ +++L
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK---VYVGNLAKTVTSEML 198
N E G+ + V +K + + L ++ ++ + S Y+ +Y+ NL V E L
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREE-ELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 199 KKCFSEKGQVLSAKVLR 215
++ FSE G + SAKV+R
Sbjct: 363 RQLFSEFGPITSAKVMR 379
Score = 166 (63.5 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 52/177 (29%), Positives = 81/177 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D+ G S+ + FV +T E A+ I+ +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHV 209
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + +++ V +I +K Q ++A NF + +YV N+ VT + +
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDR-QSKFDEMKA---NFTN----IYVKNINPEVTDDEFRTL 261
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F + G V S+ + R T KS GFGFV F LN GQ + V +A
Sbjct: 262 FEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRA 318
Score = 146 (56.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 54/223 (24%), Positives = 91/223 (40%)
Query: 39 KLSYSLHNLKTASIEDSTTRLFAVAEETAXXXXXXVDTPSEFARR------VYIGNIPRN 92
+L+ L N E +T A T TPS A +Y+G + +
Sbjct: 12 QLTSDLANANMNGGEKTTVNTNVGASFTGEEIDTAGPTPSSAAPHPQASASLYVGELDPS 71
Query: 93 IDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152
+ L ++ + G+V V D T RS +A+V T D +E+LN T I GR
Sbjct: 72 VTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRP 131
Query: 153 IKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAK 212
++ +++ D +L + N V++ NL + ++ L F+ G +LS K
Sbjct: 132 CRIMWSQR-----DPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 213 VLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
V + S G+GFV + +N LL +++ V
Sbjct: 180 VAQ-DENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 221
Score = 47 (21.6 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 221 KSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
KS GFGFV F +N ++ + + V
Sbjct: 431 KSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYV 465
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 180 (68.4 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 56/240 (23%), Positives = 103/240 (42%)
Query: 18 IFSKTHFTFQSRQPILQIRFPKLSYSLHNLKTASIEDSTTRLFAVAEETAXXXXXXVDTP 77
+ S + F SRQ I S H +++S L + +E +DT
Sbjct: 167 LLSPFSYPFLSRQSFCPIEIHSTSTDSHLANAIVLQESAV-LHSASEPPMEMR---IDTS 222
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
F V++G++ +++ N+ L + G V +A+VI D T +S+ + FV ++A
Sbjct: 223 KHF--HVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAE 280
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVD---LSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
I +NG IG R ++ N + + + L+ Q +S D+ VYVGN+++ T
Sbjct: 281 NAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNT-SVYVGNISQQTT 339
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
L+ FS G + ++ K+ + FV + +N + G ++R
Sbjct: 340 DADLRDLFSTYGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVR 393
Score = 133 (51.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXX 241
+ V+VG+L+K V++E+LK F++ G+V AKV+R T KS G+GFV+F
Sbjct: 225 FHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIA 284
Query: 242 XLNNSLLEGQRIRVNKA 258
+N + + +R N A
Sbjct: 285 GMNGKWIGKRAVRTNWA 301
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 177 (67.4 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 51/178 (28%), Positives = 88/178 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N ++D+D+L ++ E+G E +VI D +G+S+ F FV +T E A + L
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 144 NGTEIGGREIKVNITEKPLVQV-DLS-----LLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G I G+ + V +K + ++ +L L E S P +Y+ NL +T+ E
Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIDDEK 317
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
LK+ FS G + AKV+ G K GFG + F +N ++ + ++V
Sbjct: 318 LKEEFSSFGSISRAKVMVEVGQGK--GFGVICFSSFEEATKAVDEMNGRIVGSKPLQV 373
Score = 165 (63.1 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 46/175 (26%), Positives = 84/175 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L + G++ +V+ D G S+ +A+V ++ AN I +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V + P + + + + F + V+V N + + LK+ FS
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDKATFTN----VFVKNFGDDMDDDKLKELFS 220
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
E G S KV+R + KS GFGFV + L+ ++G+ + V +A
Sbjct: 221 EYGPTESVKVIR-DSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 181 (68.8 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 52/174 (29%), Positives = 81/174 (46%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D+ L + G V +V+ D+ G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPL---VQVDLSLLQA-EDSNFVDSPYKVYVGNLAKTVT 194
++++NG E+ G+ I V +K + +++ Q +D +YV NL +
Sbjct: 247 AVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + S KV+ G SK GFGFV F +N ++
Sbjct: 307 DERLQKEFSPFGTITSTKVMTEGGRSK--GFGFVCFSSPEEATKAVSEMNGRIV 358
Score = 170 (64.9 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 54/176 (30%), Positives = 78/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ + IDN L G + +V+ D+ G S+ FV +T E A IEK+
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGHGFVHFETEEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + L F
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTN-------VYIKNFGDRMDDKTLNGLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
GQVLS KV+ G KS GFGFV+F +N L G+ I V A
Sbjct: 212 GRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPA 266
Score = 128 (50.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 44/174 (25%), Positives = 78/174 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A V + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ +++ +++ D SL ++ N V++ NL KT+ ++ L FS
Sbjct: 73 NFDVIKGKPVRIMWSQR-----DPSLRRSGVGN-------VFIKNLNKTIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV V + S G GFV F +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQ 172
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 177 (67.4 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 52/189 (27%), Positives = 85/189 (44%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I D++ G + A V+ D TG+S+ + FV
Sbjct: 110 DTSNHF--HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKL 167
Query: 135 DANAVIEKLNGTEIGGREIKVN-ITEKP----LVQVDLSLLQAEDSNFVD--SPYK--VY 185
DA I + G +GGR+I+ N T KP VQ D S Q V+ SP VY
Sbjct: 168 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQ-DNSAKQLRFDEVVNQSSPQNCTVY 226
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNN 245
G + +T ++++ FS GQ++ +V P G+ F+ F +N
Sbjct: 227 CGGIQSGLTEHLMRQTFSPFGQIMEIRVF--P----EKGYSFIRFSSHESAAHAIVSVNG 280
Query: 246 SLLEGQRIR 254
+ +EG ++
Sbjct: 281 TTIEGHVVK 289
Score = 155 (59.6 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 50/194 (25%), Positives = 94/194 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG----RSRRFAF-VMMKT---- 132
+ +Y+GN+ R++ + + ++ + G + ++I ++ S F V+ T
Sbjct: 8 KTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQHTSNDP 67
Query: 133 ---VE-----DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
VE DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 117
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLN 244
+VG+L+ +T++ ++ F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 118 FVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMG 177
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 178 GQWLGGRQIRTNWA 191
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 180 (68.4 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 57/181 (31%), Positives = 85/181 (46%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +ID+++L I E G V+ D+ GRSR F FV DA
Sbjct: 189 EFTN-VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARR 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVT 194
+ ++NG E+ GR + V +K L Q +L + Y+ +YV NL ++
Sbjct: 247 AVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
E L+K F+ G + SAKV+ G S+ GFGFV F +N ++ + +
Sbjct: 307 DEKLRKEFAPYGTITSAKVMTDGGHSR--GFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 255 V 255
V
Sbjct: 365 V 365
Score = 170 (64.9 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 50/176 (28%), Positives = 82/176 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G + +V+ D+ G S+ + FV +T E AN IE +
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAANRAIETM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + ++ E +N VY+ N + + SE LK F
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTN-------VYIKNFGEDIDSEKLKNIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+E G+ LS V+ +S GFGFV F +N L G+ + V +A
Sbjct: 212 TEFGKTLSVCVM-TDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRA 266
Score = 127 (49.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 40/172 (23%), Positives = 78/172 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR I++ +++ D L ++ N +++ N+ +++ ++ L FS
Sbjct: 73 NYEVIKGRPIRIMWSQR-----DPGLRKSGVGN-------IFIKNMDESIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 121 AFGNILSCKV--VCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFV 170
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 178 (67.7 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 50/182 (27%), Positives = 82/182 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + D L +I + G V+ ++I DK + + FV A
Sbjct: 80 PEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAA 138
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ ++ LNG + EI+VN Q S + + SN + ++VG+L+ V E
Sbjct: 139 DRAMQTLNGRRVHQSEIRVNWA----YQAATSATKEDTSNH----FHIFVGDLSNEVNDE 190
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
+L + FS G V A+V+ T +S G+GFV F ++ L + IR N
Sbjct: 191 VLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCN 250
Query: 257 KA 258
A
Sbjct: 251 WA 252
Score = 132 (51.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 67 AXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A DT + F +++G++ ++++ LT+ G+V +A V++D TGRSR +
Sbjct: 163 AATSATKEDTSNHF--HIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYG 220
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVN 156
FV + DA + ++G +G R I+ N
Sbjct: 221 FVAFRDRSDAEKALSSMDGEWLGSRAIRCN 250
Score = 44 (20.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 15/70 (21%), Positives = 25/70 (35%)
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLN 244
YVGNL T+ + F G V+ ++ GF F+ LN
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRF------QADRGFAFIKMDSHENAAQAICGLN 358
Query: 245 NSLLEGQRIR 254
+ G+ ++
Sbjct: 359 GYNVNGRPLK 368
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 176 (67.0 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 48/177 (27%), Positives = 81/177 (45%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSS-DDTFNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F + L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 112 (44.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 19/77 (24%), Positives = 43/77 (55%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G++ N+D++ L ++ + V++D TG SR + FV + +DA ++ +
Sbjct: 164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 223
Query: 144 NGTEIGGREIKVNITEK 160
G ++ GR +++N K
Sbjct: 224 QGQDLNGRPLRINWAAK 240
Score = 42 (19.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 21/87 (24%), Positives = 31/87 (35%)
Query: 171 QAEDSNFVDSPYKV---YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGF 227
QA D +P +V Y+GN+ T L F G +L K P G F
Sbjct: 327 QAVDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFK--HYP----EKGCCF 380
Query: 228 VTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+ + L N +G+ +R
Sbjct: 381 IKYDTHEQAAVCIVALANFPFQGRNLR 407
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 174 (66.3 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +L ++ E G + A V+ D G+SRRF FV + E A IEK+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 144 NGTEIGGREI-------KVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG + +E+ K N TE + +L + D +YV NL +V +
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKI-IRDMK-TRKGMNLYVKNLDDSVDNT 237
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L++ FSE G + S KV+ V S G GFV F +N ++ + I V+
Sbjct: 238 KLEELFSEFGTITSCKVM-VHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 257 KA 258
A
Sbjct: 297 LA 298
Score = 149 (57.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 51/175 (29%), Positives = 78/175 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N+ +IDN +L + G V +V D +G S+ + FV +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NGT I + I V P V S Q + S + VYV NL +T T LK+ F
Sbjct: 92 NGTLIRNQHIHVC----PFV----SRGQWDKSRVFTN---VYVKNLVETATDADLKRLFG 140
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
E G++ SA V++ G KS FGFV F +N +++ + + V +A
Sbjct: 141 EFGEITSAVVMK-DGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 55/182 (30%), Positives = 84/182 (46%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D+ L +I G +V+ D +GRSR F FV E+A
Sbjct: 189 EFTN-VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLSL----LQAEDSNFVDSPYKVYVGNLAKTV 193
+ ++NG E+ GR + V +K + Q +L ++ E N +YV NL +
Sbjct: 247 AVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGI 305
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRI 253
+ L+K FS G + S KV+ G SK GFGFV F +N ++ + +
Sbjct: 306 DDDRLRKEFSPYGTITSTKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 254 RV 255
V
Sbjct: 364 YV 365
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 51/175 (29%), Positives = 84/175 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D+Y G SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY-G-SRGYGFVHFETQEAANRAIQTM 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V K + +L A+ F + VY+ N + + + LK+ FS
Sbjct: 159 NGMLLNDRKVFVGHF-KSRRERELEY-GAKVMEFTN----VYIKNFGEDMDDKRLKEIFS 212
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G LS KV+ + + +S GFGFV + +N + G+ + V +A
Sbjct: 213 AFGNTLSVKVM-MDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA 266
Score = 121 (47.7 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 43/172 (25%), Positives = 76/172 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YIG++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR I++ +++ D L ++ N V++ NL ++ ++ L FS
Sbjct: 73 NFEVIKGRPIRIMWSQR-----DPGLRKSGVGN-------VFIKNLDDSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV V S G+GFV F +N LL +++ V
Sbjct: 121 AFGDILSCKV--VCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 56/182 (30%), Positives = 84/182 (46%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N ++D+ L +I G +V+ D +GRSR F FV E+A
Sbjct: 189 EFTN-VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLSL----LQAEDSNFVDSPYKVYVGNLAKTV 193
+ ++NG E+ GR I V +K + Q +L ++ E N +YV NL +
Sbjct: 247 AVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQG-VNLYVKNLDDGI 305
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRI 253
+ L+K F G + SAKV+ G SK GFGFV F +N ++ + +
Sbjct: 306 DDDRLRKEFLPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 254 RV 255
V
Sbjct: 364 YV 365
Score = 162 (62.1 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 50/175 (28%), Positives = 84/175 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D++ G SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH-G-SRGYGFVHFETHEAANRAIQTM 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V K + +L A+ F + VY+ N + + + L++ FS
Sbjct: 159 NGMLLNDRKVFVGHF-KSRRERELEY-GAKVMEFTN----VYIKNFGEDMDDKRLREIFS 212
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G LS KV+ + + +S GFGFV + +N + G+ I V +A
Sbjct: 213 AFGNTLSVKVM-MDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266
Score = 125 (49.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 43/172 (25%), Positives = 77/172 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YIG++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR I++ +++ D L ++ N V++ NL +++ ++ L FS
Sbjct: 73 NFEVIKGRPIRIMWSQR-----DPGLRKSGVGN-------VFIKNLDESIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV V S G+GFV F +N LL +++ V
Sbjct: 121 AFGNILSCKV--VCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFV 170
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 174 (66.3 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 50/186 (26%), Positives = 82/186 (44%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
+ + SE + ++IG++ + +D L + G V ++I +K TG+S R+ FV T
Sbjct: 76 IQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTH 135
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
A V++ NGT + TE+P E S + ++VG+LA V
Sbjct: 136 AAAEKVLQSYNGTMMPN-------TEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDV 188
Query: 194 TSEMLKKCFSEKGQVLS-AKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
T ML+ F+ + L AKV+ T S G+GFV F +N +
Sbjct: 189 TDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRA 248
Query: 253 IRVNKA 258
+R+ A
Sbjct: 249 MRIGVA 254
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 177 (67.4 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 51/176 (28%), Positives = 85/176 (48%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++I N+ + IDN + G + +V D+ G S+ + FV +T E A I
Sbjct: 119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAI 177
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+K+NG + G+++ V + P Q + L + F + VYV N E L+K
Sbjct: 178 QKVNGMLLAGKKVFVGKFQ-PRAQRNRELGETA-KQFTN----VYVKNFGDHYNKETLEK 231
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
F++ G + S +V+ V G KS GFGFV F L++S +EG ++++
Sbjct: 232 LFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 285
Score = 165 (63.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/180 (25%), Positives = 84/180 (46%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+T +F VY+ N + + + L K+ + G + EV+ G+S+ F FV E
Sbjct: 207 ETAKQFTN-VYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPE 263
Query: 135 DANAVIEKLNGTEIGGREIKVNITE-KPLVQVDLSLLQAEDSNFVDSPYK-----VYVGN 188
+A ++ L+ + I G ++K+++ + + L + + + + K +YV N
Sbjct: 264 EAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKN 323
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
L +TV + LKK F G + SAKV+ +S GFGFV F +N+ ++
Sbjct: 324 LDETVDDDGLKKQFESYGNITSAKVM-TDENGRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
Score = 124 (48.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 39/174 (22%), Positives = 79/174 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ +++ L + G V V D T S +A+V + DA ++ +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + G+ +++ +++ D ++ ++ N +++ NL K + ++ + FS
Sbjct: 94 NFEALHGKPMRIMWSQR-----DPAMRRSGAGN-------IFIKNLDKVIDNKSIYDTFS 141
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV + S G+GFV F +N LL G+++ V K
Sbjct: 142 LFGNILSCKVA-IDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGK 194
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 171 (65.3 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 48/157 (30%), Positives = 78/157 (49%)
Query: 75 DTPSEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D + R I N +P+N+ DEL + G VE A++I DK G S + FV T
Sbjct: 12 DCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+DA I LNG + + IKV+ +P +V +D+N +Y+ L +T+
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTM 117
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
T + ++ FS G++++++VL T S G F+ F
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 171 (65.3 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 48/157 (30%), Positives = 78/157 (49%)
Query: 75 DTPSEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D + R I N +P+N+ DEL + G VE A++I DK G S + FV T
Sbjct: 20 DCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 79
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+DA I LNG + + IKV+ +P +V +D+N +Y+ L +T+
Sbjct: 80 KDAERAINTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTM 125
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
T + ++ FS G++++++VL T S G F+ F
Sbjct: 126 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 162
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 103 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRF 173
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 171 (65.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 48/157 (30%), Positives = 78/157 (49%)
Query: 75 DTPSEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D + R I N +P+N+ DEL + G VE A++I DK G S + FV T
Sbjct: 39 DCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 98
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+DA I LNG + + IKV+ +P +V +D+N +Y+ L +T+
Sbjct: 99 KDAERAINTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTM 144
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
T + ++ FS G++++++VL T S G F+ F
Sbjct: 145 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 181
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 173 (66.0 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 49/181 (27%), Positives = 89/181 (49%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE R +++ N+ I ++ L + + GAV KA++I++ G + +AFV A
Sbjct: 36 SEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQAT 92
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
++ NG E+ +E+ V +P + + + E S + V+VG+L + S
Sbjct: 93 LALQSHNGRELLEKEMHVTWAFEPREPGE-NRSKPETSRH----FHVFVGDLCSEIDSTK 147
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
L++ F + G+V AK++R T+K G+GFV++ +N + L + IR N
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNW 207
Query: 258 A 258
A
Sbjct: 208 A 208
Score = 124 (48.7 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G++ ID+ +L + + G V +A++I D T + + + FV EDA I+++
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 144 NGTEIGGREIKVN-ITEKP 161
NG +G R I+ N T KP
Sbjct: 194 NGAWLGRRTIRTNWATRKP 212
Score = 73 (30.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 29/106 (27%), Positives = 44/106 (41%)
Query: 149 GGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQV 208
GGR+ N +EK ++ QA N VYVGN+A E +++ F G +
Sbjct: 231 GGRDRYHNQSEKTYDEI---FNQAAADNT-----SVYVGNIANLGEDE-IRRAFDRFGPI 281
Query: 209 LSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+ T K G+ FV F +NN+ + GQ +R
Sbjct: 282 NEVR------TFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVR 321
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 174 (66.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 51/177 (28%), Positives = 85/177 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+Y+GN+P++ + + ++ G V+ +++ DK +AF+ T E A+ +
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKA-GFNYAFIEYDTNEVADMALNT 139
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAKTVTSEMLKKC 201
LNG + EIKVN + S A + N + P + ++VG+L+ V E L+
Sbjct: 140 LNGRLVDDVEIKVNWAFQ-------SAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNA 192
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
FS+ + A V+ TS+S G+GFVTF +N L G+ IR N A
Sbjct: 193 FSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWA 249
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 175 (66.7 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 51/174 (29%), Positives = 81/174 (46%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF +Y+ N+ ++D L + + G + +V+ D +G SR F FV + E+A
Sbjct: 189 EFTN-IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
+ +NG E+ GR + V +K + Q +L Q + +YV NL ++
Sbjct: 247 AVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 166 (63.5 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 52/176 (29%), Positives = 84/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G + +V+ D++ G SR F FV +T E A I +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEH-G-SRGFGFVHFETHEAAQNAISTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +V+L E +N +YV NL V + L+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTN-------IYVKNLHVDVDEQRLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G++LS KV+R + S GFGFV F +N + G+ + V +A
Sbjct: 212 SQFGKMLSVKVMR-DDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRA 266
Score = 121 (47.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 41/172 (23%), Positives = 76/172 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D L ++ N +++ NL ++ ++ L FS
Sbjct: 73 NFEVIKGQPIRIMWSQR-----DPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV V S GFGFV F +N LL +++ V
Sbjct: 121 TFGNILSCKV--VCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFV 170
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 174 (66.3 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 51/174 (29%), Positives = 81/174 (46%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF +Y+ N+ ++D L + + G + +V+ D +G SR F FV + EDA
Sbjct: 189 EFTN-IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
+ +NG E+ GR + V +K + Q +L Q + +YV NL ++
Sbjct: 247 AVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K F+ G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DEKLRKEFAPYGMITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 163 (62.4 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 52/176 (29%), Positives = 81/176 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D + G SR F FV +T E A I +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDH-G-SRGFGFVHFETHEAAQNAIRTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + +L E +N +YV NL V L+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTN-------IYVKNLHVDVDERCLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G++LS KV+R + S GFGFV F +N + G+ + V +A
Sbjct: 212 SQFGKILSVKVMR-DDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRA 266
Score = 121 (47.7 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 42/172 (24%), Positives = 76/172 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D L ++ N V++ NL ++ ++ L FS
Sbjct: 73 NFEVIKGQPIRIMWSQR-----DPGLRKSGVGN-------VFIKNLEDSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV V S GFGFV F +N LL +++ V
Sbjct: 121 TFGNILSCKV--VCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFV 170
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 174 (66.3 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 52/174 (29%), Positives = 80/174 (45%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF +Y+ N+ ++D L + G + +V+ D +G SR F FV + E+A
Sbjct: 189 EFTN-IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
+ +NG E+ GR + V +K + Q +L Q + +YV NL ++
Sbjct: 247 AVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K FS G + SAKV+ G SK GFGFV F +N +L
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIL 358
Score = 161 (61.7 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 52/176 (29%), Positives = 82/176 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G + +V+ D + G SR F FV +T E A I +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDH-G-SRGFGFVHFETHEAAQQAITTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +V+L E +N +YV NL V + L+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTN-------IYVKNLHVDVDEQGLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S G++LS KV+R + S GFGFV F +N + G+ + V +A
Sbjct: 212 SRFGKMLSVKVMR-DDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRA 266
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 41/172 (23%), Positives = 76/172 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D L ++ N +++ NL ++ ++ L FS
Sbjct: 73 NFEVIKGQPIRIMWSQR-----DPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV V S GFGFV F +N LL +++ V
Sbjct: 121 TFGNILSCKV--VCDDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFV 170
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 170 (64.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 49/160 (30%), Positives = 83/160 (51%)
Query: 74 VDTP--SEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
V+ P SE ++ I N +P+N+ +EL + G +E +++ DK TG+S + FV
Sbjct: 57 VEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 116
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLA 190
+DA I LNG + + IKV+ +P S D+N +YV L
Sbjct: 117 MEPKDAEKAINTLNGLRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLP 162
Query: 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
KT+T + L++ FS+ G+++++++L T S G GF+ F
Sbjct: 163 KTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRF 202
Score = 106 (42.4 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 29/110 (26%), Positives = 51/110 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ + G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + +LL S+ SP + Y G LA+
Sbjct: 216 NGQKPPGATEPITVKFANNPSQKSSQALL----SHLYQSPNRRYPGPLAQ 261
Score = 92 (37.4 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 367 NGYRL-GDRV 375
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 45/138 (32%), Positives = 69/138 (50%)
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDS 180
S+ +AFV +T E A+ IEK+NG + R++ V + + +L E +N
Sbjct: 50 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN---- 105
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXX 240
VY+ N + V E LK+ FS+ G+ LS KV+R P KS GFGFV++
Sbjct: 106 ---VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAV 161
Query: 241 XXLNNSLLEGQRIRVNKA 258
+N + G+ I V +A
Sbjct: 162 EEMNGKEISGKIIFVGRA 179
Score = 127 (49.8 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN
Sbjct: 102 EFTN-VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANK 159
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
+E++NG EI G+ I V +K
Sbjct: 160 AVEEMNGKEISGKIIFVGRAQK 181
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 168 (64.2 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 41/145 (28%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ DE + G +E +++ DK TG+S + FV DA+ I LNG
Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
++ + IKV+ +P S D+N +YV L KT++ + +++ FS+
Sbjct: 103 LKLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILLDQATGVSRGVGFIRF 173
Score = 98 (39.6 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 26/108 (24%), Positives = 51/108 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + E+ ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTE-IGGRE-IKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + +G E I V P + +LL ++ S + Y G L
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALL----THLYQSSARRYAGPL 230
Score = 89 (36.4 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 244 NNSLLEGQRI 253
N L G+R+
Sbjct: 346 NGYRL-GERV 354
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 168 (64.2 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 41/145 (28%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ DE + G +E +++ DK TG+S + FV DA+ I LNG
Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
++ + IKV+ +P S D+N +YV L KT++ + +++ FS+
Sbjct: 103 LKLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILLDQATGVSRGVGFIRF 173
Score = 98 (39.6 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 26/108 (24%), Positives = 51/108 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + E+ ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTE-IGGRE-IKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + +G E I V P + +LL ++ S + Y G L
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALL----THLYQSSARRYAGPL 230
Score = 89 (36.4 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 244 NNSLLEGQRI 253
N L G+R+
Sbjct: 346 NGYRL-GERV 354
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 41/132 (31%), Positives = 67/132 (50%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 60
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F +
Sbjct: 61 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 120
Query: 245 NSLLEGQRIRVN 256
L G++IR N
Sbjct: 121 GQWLGGRQIRTN 132
Score = 112 (44.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I +++ G + A V+ D TG+S+ + FV
Sbjct: 53 DTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 110
Query: 135 DANAVIEKLNGTEIGGREIKVN 156
DA I + G +GGR+I+ N
Sbjct: 111 DAENAIVHMGGQWLGGRQIRTN 132
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 171 (65.3 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 50/174 (28%), Positives = 81/174 (46%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF +Y+ N+P ++D L + + G + +V+ D +G SR F FV + E+A
Sbjct: 189 EFTN-IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLSLL---QAEDSNFVDSPYKVYVGNLAKTVT 194
+ +NG E+ GR + +K + Q +L +D +YV NL ++
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
+ L+K FS G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DDKLRKEFSPYGVITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 147 (56.8 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 49/176 (27%), Positives = 80/176 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G + +V D++ G SR F FV +T E A I +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEH-G-SRGFGFVHFETHEAAQQAINTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + +L E +N +YV NL V + L+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTN-------IYVKNLPVDVDEQGLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G++LS KV+R + S FGFV F +N + G+ + +A
Sbjct: 212 SQFGKMLSVKVMR-DNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA 266
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 39/172 (22%), Positives = 75/172 (43%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + G+ I++ +++ D L ++ N +++ NL ++ ++ L FS
Sbjct: 73 NFEMLKGQPIRIMWSQR-----DPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV S GFGFV F +N LL +++ V
Sbjct: 121 TFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 169 (64.5 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 49/183 (26%), Positives = 82/183 (44%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVED 135
P R +Y+G + + D L +I + G V ++I DK + + + FV
Sbjct: 85 PEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGA 144
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ LNG I EI+VN + + ED++ + + ++VG+L+ V
Sbjct: 145 AERAMQTLNGRRIHQSEIRVNWAYQS------NTANKEDTS---NHFHIFVGDLSNEVND 195
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
E+L + FS G V A+V+ T +S G+GFV F ++ L + IR
Sbjct: 196 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRC 255
Query: 256 NKA 258
N A
Sbjct: 256 NWA 258
Score = 124 (48.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F +++G++ ++++ L + G+V +A V++D TGRSR + FV +
Sbjct: 177 DTSNHF--HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERA 234
Query: 135 DANAVIEKLNGTEIGGREIKVN 156
DA + ++G +G R I+ N
Sbjct: 235 DAEKALTSMDGEWLGSRAIRCN 256
Score = 47 (21.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/70 (21%), Positives = 24/70 (34%)
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLN 244
YVGNL T + F G V+ ++ GF F+ LN
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRM------QADRGFAFIKMDTHENAASAICQLN 364
Query: 245 NSLLEGQRIR 254
+ G+ ++
Sbjct: 365 GYNVNGRPLK 374
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 170 (64.9 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 46/170 (27%), Positives = 81/170 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++D L + + G + +V+ D G+SR F F+ + E+A ++ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 144 NGTEIGGREIKVNITEKPLV-QVDLSL----LQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ G+ + V +K Q +L ++ E N +YV NL ++ + L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQG-VNLYVKNLDDSINDDRL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
K+ FS G + SAKV+ +S S GFGFV F +N ++
Sbjct: 311 KEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 166 (63.5 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 49/176 (27%), Positives = 84/176 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G++ ++V+Y+++ G SR F FV +T E A I +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEH-G-SRGFGFVHFETHEAAQKAINTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + +L A F + +YV NL + + L+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELG---ARALGFTN----IYVKNLRVDMDEQGLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G+ S KV+R +S GFGF+ F +N + GQ + V +A
Sbjct: 212 SQFGKTQSVKVMR-DSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 125 (49.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 41/172 (23%), Positives = 77/172 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L ++ G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ + + D L ++ N +++ NL ++ ++ L FS
Sbjct: 73 NFEMIKGQPIRIMWSHR-----DPGLRRSGMGN-------IFIKNLENSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS+KV V S GFGFV F +N LL +++ V
Sbjct: 121 TFGSILSSKV--VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV 170
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+G++ ++ DEL ++G +E+A++I D+ TGRS+ FAF+ T + A + K
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 143 LNGTEIGGREIKVNITEK 160
NG ++ GR+I+VNI +
Sbjct: 79 ANGIDLQGRKIRVNIARE 96
Score = 127 (49.8 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXX 239
S K+YVG+L+ VT++ L+ F + G++ AK++ T +S GF F+T+
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 240 XXXLNNSLLEGQRIRVNKA 258
N L+G++IRVN A
Sbjct: 76 VSKANGIDLQGRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+G++ ++ DEL ++G +E+A++I D+ TGRS+ FAF+ T + A + K
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 143 LNGTEIGGREIKVNITEK 160
NG ++ GR+I+VNI +
Sbjct: 79 ANGIDLQGRKIRVNIARE 96
Score = 127 (49.8 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXX 239
S K+YVG+L+ VT++ L+ F + G++ AK++ T +S GF F+T+
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 240 XXXLNNSLLEGQRIRVNKA 258
N L+G++IRVN A
Sbjct: 76 VSKANGIDLQGRKIRVNIA 94
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 167 (63.8 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 47/157 (29%), Positives = 78/157 (49%)
Query: 75 DTPSEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D + R I N +P+N+ DEL + G VE A++I DK G S + FV T
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+DA I LNG + + IKV+ +P +V +D+N +Y+ L +++
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRSM 117
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
T + ++ FS G++++++VL T S G F+ F
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 167 (63.8 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 47/157 (29%), Positives = 78/157 (49%)
Query: 75 DTPSEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D + R I N +P+N+ +EL + G VE A++I DK G S + FV T
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+DA I LNG + + IKV+ +P +V +D+N +Y+ L +T+
Sbjct: 72 KDAERAISTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTM 117
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
T + ++ FS G++++++VL T S G F+ F
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 167 (63.8 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 47/157 (29%), Positives = 78/157 (49%)
Query: 75 DTPSEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D + R I N +P+N+ +EL + G VE A++I DK G S + FV T
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+DA I LNG + + IKV+ +P +V +D+N +Y+ L +T+
Sbjct: 72 KDAERAISTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTM 117
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
T + ++ FS G++++++VL T S G F+ F
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 49/174 (28%), Positives = 83/174 (47%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF VYI N +++++ L ++ ++G +V+ D G+S+ F FV + EDA
Sbjct: 189 EFTN-VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLS--LLQAEDSNFVD-SPYKVYVGNLAKTVT 194
++++NG ++ G+ + V +K + Q +L Q + +YV NL +
Sbjct: 247 AVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
E L+K F G + SAKV+ G SK GFGFV F +N ++
Sbjct: 307 DERLRKEFLPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 49/176 (27%), Positives = 81/176 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ G S+ + FV +T E A I+K+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIDKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGDDMNDERLKEMF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G LS KV+ KS GFGFV+F +N + G+ + V +A
Sbjct: 212 GKYGPALSVKVM-TDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA 266
Score = 141 (54.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 45/181 (24%), Positives = 83/181 (45%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ +++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I GR +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGRPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 49/183 (26%), Positives = 78/183 (42%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E +Y+ N+ ++ D L + E G + + D+ R +AFV EDA
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDA 254
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQA----EDSNFVDSPYKVYVGNLAKT 192
E +NGT+ G + + V +K + L Q E+ + +YV N+
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVA 314
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
VT E L+K FS+ G + S K++ KS GFGFV F + + G+
Sbjct: 315 VTEEELRKHFSQCGTITSTKLM-CDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKP 373
Query: 253 IRV 255
+ V
Sbjct: 374 LYV 376
Score = 147 (56.8 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 44/174 (25%), Positives = 83/174 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L E ++ + D +GRS + + + +DAN IEK
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + + G+ I+V + ++A D+ + V+V NL ++VT+ +L+ F
Sbjct: 86 NNSLLNGKMIRV-----------MWSVRAPDARR-NGVGNVFVKNLPESVTNAVLQDMFK 133
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
+ G ++S KV + KS G+GFV F LN++++ + I V K
Sbjct: 134 KFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGK 186
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 170 (64.9 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 53/182 (29%), Positives = 85/182 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V + N+ D ++ + E G V + I D+ +G+S+ A+V T E AVI+
Sbjct: 489 VLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQE---AVIKA 545
Query: 143 L--NGTEIGGREIKVNITEKPLVQVDLSLL-QAEDSNFVDSPYKVYVGNLA---KTVTSE 196
L NG + R IK+ ++ + + Q D N D P K+Y+G L +T +
Sbjct: 546 LAANGMMLKNRPIKIQSSQAEKNRAAKAAKHQPIDPN--DIPLKLYIGGLLGPLSNITEQ 603
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
LK+ F+ G +L ++ R P T KS GFGF+ F +N + G+ I+V
Sbjct: 604 ELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVG 663
Query: 257 KA 258
A
Sbjct: 664 YA 665
Score = 132 (51.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 77 PSEFARRVYIGNI--P-RNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
P++ ++YIG + P NI EL ++ G + E+ D YTG+S+ F F+
Sbjct: 581 PNDIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKA 640
Query: 134 EDANAVIEKLNGTEIGGREIKVNITE 159
+A + +NG E+ GREIKV +
Sbjct: 641 SEAIEALTVMNGMEVAGREIKVGYAQ 666
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 170 (64.9 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 53/182 (29%), Positives = 85/182 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V + N+ D ++ + E G V + I D+ +G+S+ A+V T E AVI+
Sbjct: 489 VLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQE---AVIKA 545
Query: 143 L--NGTEIGGREIKVNITEKPLVQVDLSLL-QAEDSNFVDSPYKVYVGNLA---KTVTSE 196
L NG + R IK+ ++ + + Q D N D P K+Y+G L +T +
Sbjct: 546 LAANGMMLKNRPIKIQSSQAEKNRAAKAAKHQPIDPN--DIPLKLYIGGLLGPLSNITEQ 603
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
LK+ F+ G +L ++ R P T KS GFGF+ F +N + G+ I+V
Sbjct: 604 ELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVG 663
Query: 257 KA 258
A
Sbjct: 664 YA 665
Score = 132 (51.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 77 PSEFARRVYIGNI--P-RNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
P++ ++YIG + P NI EL ++ G + E+ D YTG+S+ F F+
Sbjct: 581 PNDIPLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKA 640
Query: 134 EDANAVIEKLNGTEIGGREIKVNITE 159
+A + +NG E+ GREIKV +
Sbjct: 641 SEAIEALTVMNGMEVAGREIKVGYAQ 666
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 167 (63.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 51/178 (28%), Positives = 85/178 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N ++D+++L +I +G E +VI D +G+S+ F FV +T E A + L
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 144 NGTEIGGREIKVNITEKPLVQV-DLS-----LLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G I G+ + V +K + ++ +L L E S P +Y+ NL +T+ E
Sbjct: 260 HGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIDDEK 317
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
LK+ FS G + AKV+ G K GFG V F +N + + + V
Sbjct: 318 LKEEFSSFGSISRAKVMVEVGQGK--GFGVVCFSSFEDATKAVDEMNGRTVGSKPLHV 373
Score = 156 (60.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 46/175 (26%), Positives = 81/175 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L + G + +V+ D G S+ +A+V ++ AN I +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V + P + + + + F + V+V N + E LK+ FS
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTN----VFVKNFGNDMDDEKLKEIFS 220
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G S KV+R + KS GFGFV + L+ + G+ + V +A
Sbjct: 221 GYGPTESVKVIR-DASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRA 274
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 47/157 (29%), Positives = 77/157 (49%)
Query: 75 DTPSEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D + R I N +P+N+ DEL + G VE A++I DK G S + FV T
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+DA I LNG + + IKV+ +P +V +D+N +Y+ L + +
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRNM 117
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
T + ++ FS G++++++VL T S G F+ F
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 103 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRF 173
Score = 108 (43.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + + ++L S SP + Y G LA+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAIL----SQLYQSPNRRYPGPLAQ 232
Score = 92 (37.4 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 325 NGYRL-GDRV 333
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 103 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRF 173
Score = 108 (43.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + + ++L S SP + Y G LA+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAIL----SQLYQSPNRRYPGPLAQ 232
Score = 92 (37.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 338 NGYRL-GDRV 346
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 46/154 (29%), Positives = 80/154 (51%)
Query: 78 SEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
+E ++ I N +P+N+ +EL + G +E +++ DK TG+S + FV +DA
Sbjct: 34 TEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
I LNG + + IKV+ +P S D+N +YV L KT+T +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQK 139
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
L++ FS+ G+++++++L T S G GF+ F
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 108 (43.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + + ++L S SP + Y G LA+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAIL----SQLYQSPNRRYPGPLAQ 232
Score = 92 (37.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 338 NGYRL-GDRV 346
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 46/154 (29%), Positives = 80/154 (51%)
Query: 78 SEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
+E ++ I N +P+N+ +EL + G +E +++ DK TG+S + FV +DA
Sbjct: 34 TEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
I LNG + + IKV+ +P S D+N +YV L KT+T +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQK 139
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
L++ FS+ G+++++++L T S G GF+ F
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 108 (43.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + + ++L S SP + Y G LA+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAIL----SQLYQSPNRRYPGPLAQ 232
Score = 92 (37.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 338 NGYRL-GDRV 346
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 103 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRF 173
Score = 108 (43.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + + ++L S SP + Y G LA+
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAIL----SQLYQSPNRRYPGPLAQ 232
Score = 92 (37.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 339 NGYRL-GDRV 347
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 166 (63.5 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 46/175 (26%), Positives = 80/175 (45%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
T + + + +P+N+ +E + G +E +++ DK TG+S + FV +D
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A I LNG + + IKV+ +P S D+N +YV L KT+T
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQ 150
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
+ L++ FS+ G+++++++L T S G GF+ F LN G
Sbjct: 151 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 167 (63.8 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 49/177 (27%), Positives = 84/177 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D++ G S+ + FV +T E AN I+ +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHV 190
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + +++ V +I++K S + +NF + +Y+ N+ V E +K
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQ----SKFEEMKANFTN----IYIKNIDPEVEDEEFRKL 242
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F + G++ SA + R KS GFGFV F +N+ + Q++ V +A
Sbjct: 243 FEKFGEITSATLSR-DSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Score = 158 (60.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 41/136 (30%), Positives = 70/136 (51%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI NI ++++E K+ ++ G + A + D G+SR F FV T E A A +E++
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS-EGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N E+ +++ V +K + + Q E + S Y+ +YV NL V + L+
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 200 KCFSEKGQVLSAKVLR 215
+ F G + SAKV+R
Sbjct: 344 ELFGPYGTITSAKVMR 359
Score = 123 (48.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 42/181 (23%), Positives = 77/181 (42%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
T + +Y+G + ++ L ++ G V V D T RS +A+V
Sbjct: 36 TSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAH 95
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
+++LN T I G+ ++ +++ D +L + N V++ NL + +
Sbjct: 96 GERALDELNYTLIKGKPCRIMWSQR-----DPALRKTGQGN-------VFIKNLDSAIDN 143
Query: 196 EMLKKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
+ L F+ G +LS KV + G SK G+GFV + +N LL +++
Sbjct: 144 KALHDTFAAFGNILSCKVAQDEFGVSK--GYGFVHYETAEAANNAIKHVNGMLLNDKKVF 201
Query: 255 V 255
V
Sbjct: 202 V 202
Score = 54 (24.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 221 KSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
KS GFGFV F +N ++ G+ + V
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 449
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 166 (63.5 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 46/175 (26%), Positives = 80/175 (45%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
T + + + +P+N+ +E + G +E +++ DK TG+S + FV +D
Sbjct: 40 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A I LNG + + IKV+ +P S D+N +YV L KT+T
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQ 145
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
+ L++ FS+ G+++++++L T S G GF+ F LN G
Sbjct: 146 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 166 (63.5 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 46/175 (26%), Positives = 80/175 (45%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
T + + + +P+N+ +E + G +E +++ DK TG+S + FV +D
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A I LNG + + IKV+ +P S D+N +YV L KT+T
Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQ 150
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
+ L++ FS+ G+++++++L T S G GF+ F LN G
Sbjct: 151 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 166 (63.5 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 71 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 130
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 131 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 176
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 177 GRIITSRILVDQVTGISRGVGFIRF 201
Score = 108 (43.1 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + + ++L S SP + Y G LA+
Sbjct: 215 NGQKPPGATEPITVKFANNPSQKTNQAIL----SQLYQSPNRRYPGPLAQ 260
Score = 92 (37.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 366 NGYRL-GDRV 374
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 166 (63.5 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 72 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 131
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 132 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 177
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 178 GRIITSRILVDQVTGISRGVGFIRF 202
Score = 108 (43.1 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + + ++L S SP + Y G LA+
Sbjct: 216 NGQKPPGATEPITVKFANNPSQKTNQAIL----SQLYQSPNRRYPGPLAQ 261
Score = 92 (37.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 368 NGYRL-GDRV 376
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 166 (63.5 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +EL + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 72 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 131
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 132 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 177
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 178 GRIITSRILVDQVTGISRGVGFIRF 202
Score = 108 (43.1 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + + ++L S SP + Y G LA+
Sbjct: 216 NGQKPPGATEPITVKFANNPSQKTNQAIL----SQLYQSPNRRYPGPLAQ 261
Score = 92 (37.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 367 NGYRL-GDRV 375
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 167 (63.8 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 39/173 (22%), Positives = 84/173 (48%)
Query: 77 PSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
P+E V+ N+ ++ D+L +++Q++G + ++ D G+S+ F F ++ E
Sbjct: 182 PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESAEA 240
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A V+E NG G+ I +K ++ + L ++ + +Y+ N+ ++ +
Sbjct: 241 AKNVVENENGKIFHGKPIYAGRAQKK-IEREAELKHTFETKY--QGVNLYIKNIDDSIDN 297
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
+ L++ FS+ G + SA V++ + S GFGFV + +N ++
Sbjct: 298 DKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMI 350
Score = 164 (62.8 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 48/172 (27%), Positives = 79/172 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + L +I + G V V D T RS +A+V DA ++ L
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T I G+ ++ +++ D SL ++ N V++ NL K + + L FS
Sbjct: 72 NNTPIRGKACRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKGIDHKALYDTFS 119
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV+ G S S GFGFV + +N ++ GQ++ V
Sbjct: 120 AFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFV 170
Score = 138 (53.6 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 44/175 (25%), Positives = 75/175 (42%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ + ID+ L G + +V+ D S+ F FV +T E A+ I K+
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKV 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG I G+++ V P + Q + F + V+ NL++ V + LK+
Sbjct: 159 NGMMINGQKVFVG----PF-KSSKERGQPTEVKFTN----VFFKNLSEDVGPDQLKELLQ 209
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G++ + ++ KS GFGF F N + G+ I +A
Sbjct: 210 QYGEITNITIM-ADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRA 263
Score = 113 (44.8 bits), Expect = 0.00072, P = 0.00072
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI NI +IDND+L ++ + G + A V+ D S+ F FV ++A + ++
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEM 345
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + V + ++
Sbjct: 346 NGRMIGTKPLYVALAQR 362
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+ + + +L + +G V+ A+V+ D+ TGRSR F FV M + ++A A I
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 143 LNGTEIGGREIKVNITEKP 161
LNG E+ GR + VN P
Sbjct: 64 LNGKEMDGRNLMVNEARPP 82
Score = 115 (45.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXX 242
K+YVGNL V L++ F+ G V SA+V+ T +S GFGFV
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 243 LNNSLLEGQRIRVNKA 258
LN ++G+ + VN+A
Sbjct: 64 LNGKEMDGRNLMVNEA 79
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 165 (63.1 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 46/157 (29%), Positives = 78/157 (49%)
Query: 75 DTPSEFARRVYIGN-IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D + R I N +P+N+ +EL + G +E A++I DK G S + FV T
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+DA I LNG + + IKV+ +P +V +D+N +Y+ L +T+
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSYA-RPSSEV------IKDAN-------LYISGLPRTM 117
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
T + ++ FS G++++++VL T S G F+ F
Sbjct: 118 TQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRF 154
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 165 (63.1 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 44/176 (25%), Positives = 81/176 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + + L ++ + G V V D+ T + + F+ ++ EDA+ I+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ I+VN ++D +D +++GNL V ++L FS
Sbjct: 87 NMIKLHGKPIRVNKA-------------SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS 133
Query: 204 EKGQVLS-AKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G + S K++R P T S GFGF+++ + L ++I V+ A
Sbjct: 134 AFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 164 (62.8 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 48 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 107
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 108 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 153
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 154 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 198
Score = 104 (41.7 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 192 NGQKPSGATEPITVKFANNPSQKSSQALL----SQLYQSPNRRYPGPL 235
Score = 85 (35.0 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 330 NGYRL-GDRV 338
>FB|FBgn0030571 [details] [associations]
symbol:CG14414 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:AE014298
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 FlyBase:FBgn0030571
UniGene:Dm.14675 GeneID:32394 KEGG:dme:Dmel_CG14414
GenomeRNAi:32394 NextBio:778237 RefSeq:NP_727783.3
ProteinModelPortal:Q9VY29 SMR:Q9VY29 UCSC:CG14414-RB
InParanoid:Q9VY29 PhylomeDB:Q9VY29 ArrayExpress:Q9VY29 Bgee:Q9VY29
Uniprot:Q9VY29
Length = 205
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 39/105 (37%), Positives = 61/105 (58%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK---YTGRSRRFAFVMMKTV 133
P E ARR+++GN+ I +L K++Q+ GA+EK ++++ K G+SR +AFV
Sbjct: 23 PEE-ARRIWVGNLDSRITEFQLLKLMQKCGAIEKFDMLFHKGGPMVGQSRGYAFVTFAQN 81
Query: 134 EDANAVIEKLNGTEIGGREIKV----NI----TEKPLVQVDLSLL 170
E A + KL+GT +G R I V NI T+KP ++D+ L
Sbjct: 82 EGATNALLKLDGTSVGNRSIAVRLAKNIKYDETQKPKPRLDIPAL 126
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 164 (62.8 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 110 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 155
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Score = 104 (41.7 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQALL----SQLYQSPNRRYPGPL 237
Score = 85 (35.0 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 345 NGYRL-GDRV 353
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 164 (62.8 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 110 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 155
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Score = 104 (41.7 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQALL----SQLYQSPNRRYPGPL 237
Score = 85 (35.0 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 345 NGYRL-GDRV 353
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 164 (62.8 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 41/145 (28%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ DE + G +E +++ DK TG+S + FV DA+ I LNG
Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
++ + IKV+ +P S D+N +YV L KT++ + +++ FS+
Sbjct: 103 LKLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRF 173
Score = 99 (39.9 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 26/108 (24%), Positives = 51/108 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + E+ ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTE-IGGRE-IKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + +G E I V P + +LL ++ S + Y G L
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALL----THLYQSSARRYAGPL 230
Score = 89 (36.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 244 NNSLLEGQRI 253
N L G+R+
Sbjct: 346 NGYRL-GERV 354
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 164 (62.8 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 41/145 (28%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ DE + G +E +++ DK TG+S + FV DA+ I LNG
Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
++ + IKV+ +P S D+N +YV L KT++ + +++ FS+
Sbjct: 103 LKLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRF 173
Score = 99 (39.9 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 26/108 (24%), Positives = 51/108 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + E+ ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTE-IGGRE-IKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + +G E I V P + +LL ++ S + Y G L
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALL----THLYQSSARRYAGPL 230
Score = 89 (36.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 244 NNSLLEGQRI 253
N L G+R+
Sbjct: 346 NGYRL-GERV 354
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 164 (62.8 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 41/145 (28%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ DE + G +E +++ DK TG+S + FV DA+ I LNG
Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
++ + IKV+ +P S D+N +YV L KT++ + +++ FS+
Sbjct: 103 LKLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRF 173
Score = 99 (39.9 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 26/108 (24%), Positives = 51/108 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + E+ ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTE-IGGRE-IKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + +G E I V P + +LL ++ S + Y G L
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALL----THLYQSSARRYAGPL 230
Score = 89 (36.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 244 NNSLLEGQRI 253
N L G+R+
Sbjct: 346 NGYRL-GERV 354
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 164 (62.8 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 41/145 (28%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ DE + G +E +++ DK TG+S + FV DA+ I LNG
Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
++ + IKV+ +P S D+N +YV L KT++ + +++ FS+
Sbjct: 103 LKLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMSQKEMEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRF 173
Score = 98 (39.6 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + E+ ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTE-IGGRE-IKVNITEKPLVQVDLSLL 170
NG + +G E I V P + +LL
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALL 215
Score = 89 (36.4 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 244 NNSLLEGQRI 253
N L G+R+
Sbjct: 347 NGYRL-GERV 355
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 164 (62.8 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 115 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 160
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 161 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
Score = 106 (42.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 199 NGQKPSGATEPITVKFANNPSQKTSQALL----SQLYQSPNRRYPGPL 242
Score = 85 (35.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 350 NGYRL-GDRV 358
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 164 (62.8 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 103 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 193
Score = 104 (41.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 187 NGQKPSGATEPITVKFANNPSQKSSQALL----SQLYQSPNRRYPGPL 230
Score = 85 (35.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 352 NGYRL-GDRV 360
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 164 (62.8 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 103 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 148
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 193
Score = 104 (41.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 187 NGQKPSGATEPITVKFANNPSQKSSQALL----SQLYQSPNRRYPGPL 230
Score = 85 (35.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 352 NGYRL-GDRV 360
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 164 (62.8 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 110 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 155
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Score = 104 (41.7 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQALL----SQLYQSPNRRYPGPL 237
Score = 85 (35.0 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 359 NGYRL-GDRV 367
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 164 (62.8 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 66 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 125
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 126 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 171
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 172 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 216
Score = 104 (41.7 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 210 NGQKPSGATEPITVKFANNPSQKSSQALL----SQLYQSPNRRYPGPL 253
Score = 85 (35.0 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 361 NGYRL-GDRV 369
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 164 (62.8 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 54 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 113
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 114 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 159
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 160 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 204
Score = 104 (41.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 198 NGQKPSGATEPITVKFANNPSQKSSQALL----SQLYQSPNRRYPGPL 241
Score = 85 (35.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 363 NGYRL-GDRV 371
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 164 (62.8 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 115 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 160
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 161 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
Score = 104 (41.7 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 199 NGQKPSGATEPITVKFANNPSQKSSQALL----SQLYQSPNRRYPGPL 242
Score = 85 (35.0 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 364 NGYRL-GDRV 372
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 164 (62.8 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 42/145 (28%), Positives = 75/145 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+++ +EL + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 71 VNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNG 130
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 131 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 176
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 177 GRIITSRILVDQVTGMSRGVGFIRF 201
Score = 99 (39.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 26/110 (23%), Positives = 50/110 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTE--IGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + I V P + + ++L S SP + Y LA+
Sbjct: 215 NGQKPPAATEPITVKFANNPSQKTNQAIL----SQLYHSPNRRYPAPLAQ 260
Score = 92 (37.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 367 NGYRL-GDRV 375
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 164 (62.8 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV +DA I LNG
Sbjct: 92 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 151
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 152 LRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQY 197
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
G+++++++L T S G GF+ F LN G
Sbjct: 198 GRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 242
Score = 107 (42.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 28/108 (25%), Positives = 49/108 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
NG + G I V P + +LL S SP + Y G L
Sbjct: 236 NGQKPSGAAEPITVKFANNPSQKTSQALL----SQLYQSPNRRYPGPL 279
Score = 85 (35.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 387 NGYRL-GDRV 395
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 164 (62.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 49/177 (27%), Positives = 87/177 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G + +++ D+ G+S+ F FV + A I+ L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + G+EI V +++ K + D S L+ +++ + +YV N+ T E ++
Sbjct: 187 NGMLLNGQEIYVAPHLSRK---ERD-SQLEETKAHYTN----LYVKNINSETTDEQFQEL 238
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F++ G ++SA L K GFGFV + LN+S L G+++ V +A
Sbjct: 239 FAKFGPIVSAS-LEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 294
Score = 162 (62.1 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 48/185 (25%), Positives = 87/185 (47%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+T + + +Y+ NI +++ ++ + G + A + D G+ + F FV + E
Sbjct: 213 ETKAHYTN-LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHE 270
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLA 190
DA +E LN +E+ G ++ V +K ++ + Q E + Y+ ++V NL
Sbjct: 271 DAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLD 330
Query: 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
+V E L++ F+ G + SAKV+R KS GFGFV F N ++ G
Sbjct: 331 DSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEKNQQIVAG 389
Query: 251 QRIRV 255
+ + V
Sbjct: 390 KPLYV 394
Score = 157 (60.3 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 50/172 (29%), Positives = 75/172 (43%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L I G+V V D T S +A+V E IE+L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T I GR ++ +++ D SL + N +++ NL + ++ L FS
Sbjct: 100 NYTPIKGRLCRIMWSQR-----DPSLRKKGSGN-------IFIKNLHPDIDNKALYDTFS 147
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS+K+ KS GFGFV F LN LL GQ I V
Sbjct: 148 VFGDILSSKIA-TDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 158 (60.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 45/148 (30%), Positives = 73/148 (49%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ G S+ + FV +T E A I+K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
+ G LS KV+ + KS GFGFV+F
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSF 238
Score = 135 (52.6 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 43/182 (23%), Positives = 82/182 (45%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + + D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 66 TAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
TA E R +Y+GN+P + + ++ EHG+V ++ DK+TG+ R F
Sbjct: 55 TASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGF 114
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKP 161
FV M + +D + I LN TE R +KV E+P
Sbjct: 115 GFVEMAS-DDLDKAISALNDTEFQQRTLKVREAKERP 150
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 66 TAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
TA E R +Y+GN+P + + ++ EHG+V ++ DK+TG+ R F
Sbjct: 55 TASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGF 114
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKP 161
FV M + +D + I LN TE R +KV E+P
Sbjct: 115 GFVEMAS-DDLDKAISALNDTEFQQRTLKVREAKERP 150
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 162 (62.1 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 47/182 (25%), Positives = 85/182 (46%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++G I D D+L + +G V +A V+ DK TGR R F FV+ + V+++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 143 LNGTEIGGREIKVN-ITEKPLVQV-----DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ I RE+ V + QV +L+ ++ + + K++VG L T+T E
Sbjct: 67 KHS--IDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDE 124
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
++ F G V ++ T++ GFGFV+F + L G+++ V
Sbjct: 125 EFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDL-SGKQVEVK 183
Query: 257 KA 258
+A
Sbjct: 184 RA 185
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 161 (61.7 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 41/149 (27%), Positives = 79/149 (53%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+++IG + ++ N K ++G + + ++ D++TG+ R F F+ T D + V +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFI---TFADPSVVDKV 76
Query: 143 LNGTE-IGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+ T I G+++++ T + Q++D K++VG + TVT + LK
Sbjct: 77 IEDTHVINGKQVEIKRT----IPKGAGGNQSKDIK----TKKIFVGGIPSTVTEDELKDF 128
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
F++ G V+ +V+R T++S GFGFV F
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 113 (44.8 bits), Expect = 0.00036, P = 0.00036
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+++++G IP + DEL ++G V + +VI D T RSR F FV+ + E + ++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 142 KLNGTEIGGREIKVNITE 159
K N ++ ++++ E
Sbjct: 169 KGNMIDMADTQVEIKKAE 186
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 161 (61.7 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 52/177 (29%), Positives = 82/177 (46%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR + N+P + DEL ++ ++ AVE V D G+S+ A++ KT DA +
Sbjct: 46 ARTLLAKNLPYKVTQDELKEVFED--AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTL 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E+ GTEI GR I + T + D ++S + + + NLA + T E L++
Sbjct: 101 EEKQGTEIDGRSISLYYTGEKGQNQDFR--GGKNSTWSGESKTLVLSNLAYSATEETLQE 158
Query: 201 CFSEKGQVLSAKVLRVPGTS--KSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
F EK A ++VP KS G+ F+ F N +EG+ IR+
Sbjct: 159 VF-EK-----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 209
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 40/153 (26%), Positives = 67/153 (43%)
Query: 109 EKAEVIY--DKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVD 166
EKA I G+S+ +AF+ + EDA + N EI GR I++ + + P
Sbjct: 161 EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL-QGP----- 214
Query: 167 LSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
N P K ++V L++ T E LK+ F G + A+++ T S GF
Sbjct: 215 -----RGSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGF 266
Query: 226 GFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
GFV F + + ++G ++ ++ A
Sbjct: 267 GFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 299
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ +Y+GN+P I +++L +I E G V A VI +K TGRSR + F+ ++ EDA +
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMT 61
Query: 142 KLNGTEIGGREIKVN 156
LNG E+ GR++ V+
Sbjct: 62 GLNGKEVEGRQLVVS 76
Score = 108 (43.1 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
+YVGNL + SE L++ SE G+V+ A+V+ T +S G+GF+ L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMTG-L 63
Query: 244 NNSLLEGQRIRVNKA 258
N +EG+++ V++A
Sbjct: 64 NGKEVEGRQLVVSEA 78
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ +Y+GN+P I +++L +I E G V A VI +K TGRSR + F+ ++ EDA +
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMT 61
Query: 142 KLNGTEIGGREIKVN 156
LNG E+ GR++ V+
Sbjct: 62 GLNGKEVEGRQLVVS 76
Score = 108 (43.1 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
+YVGNL + SE L++ SE G+V+ A+V+ T +S G+GF+ L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMTG-L 63
Query: 244 NNSLLEGQRIRVNKA 258
N +EG+++ V++A
Sbjct: 64 NGKEVEGRQLVVSEA 78
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 160 (61.4 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 42/145 (28%), Positives = 72/145 (49%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ DEL + G VE A++I DK G S + FV +DA I LNG
Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG 83
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV++ +P S +D+N +Y+ L +T+T + ++ F
Sbjct: 84 LRLQSKTIKVSVA-RP------SSESIKDAN-------LYISGLPRTMTQKDVEDMFLPF 129
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G++++++VL T S G F+ F
Sbjct: 130 GRIINSRVLVDQATGLSRGVAFIRF 154
Score = 87 (35.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXX 239
S + +++ NL + +L + F G V + KV+R T+K GFGFVT
Sbjct: 242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301
Query: 240 XXXLNNSLLEGQRIRV 255
LN L + ++V
Sbjct: 302 IASLNGYRLGDKTLQV 317
Score = 87 (35.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 27/106 (25%), Positives = 45/106 (42%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI +PR + ++ + G + + V+ D+ TG SR AF+ +A I
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 144 NGTEIGGRE--IKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
NG + G I V P +++LL S SP + + G
Sbjct: 168 NGHKPPGSSEPITVKFAANPNQNKNMALL----SQLCHSPARRFGG 209
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 163 (62.4 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 60/223 (26%), Positives = 102/223 (45%)
Query: 51 SIEDSTTRLFAVAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK 110
S E T A+ E ++ D ++ R ++I ++P + N+ L + + ++
Sbjct: 6 SPEKPTEASGAITESSSSKNNVQEDGATQPRRELFIRSLPASATNESLAEHFSQSYVIKH 65
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVD---- 166
A V+ D T +S+ + FV VEDA A +E+LNG+ G++IKV + VD
Sbjct: 66 AVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHRVVDETVG 125
Query: 167 LSLLQAE--------DSNFVDS-PYKVYVGNLAKTV-TSEMLKKCFSEKGQVLSAKVLRV 216
S+ AE + D+ P K+ V NL ++ T E L F G+V K + +
Sbjct: 126 KSVPSAEALERKKQREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKV---KYVTL 182
Query: 217 PGT-SKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
P S+ +GFGFV +N ++G+ + V+ A
Sbjct: 183 PKKGSQLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWA 225
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 159 (61.0 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 44/159 (27%), Positives = 73/159 (45%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ DEL + G VE A++I DK G S + FV DA I LNG
Sbjct: 38 VNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNG 97
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P S +D+N +Y+ L KT+T + +++ F
Sbjct: 98 LRLQSKTIKVSYA-RP------SSDSIKDAN-------LYISGLPKTMTQKDVEEMFGRY 143
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLN 244
G++++++VL + S G F+ F LN
Sbjct: 144 GRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLN 182
Score = 86 (35.3 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXX 239
S + +++ NL + +L + F G V + KV+R T+K GFGFVT
Sbjct: 256 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMA 315
Query: 240 XXXLNNSLLEGQRI 253
LN L G +I
Sbjct: 316 IASLNGYRL-GDKI 328
Score = 84 (34.6 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI +P+ + ++ ++ +G + + V+ D+ +G SR AF+ +A I+ L
Sbjct: 122 LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDL 181
Query: 144 NGTEIGG--REIKVNITEKP 161
NG + G ++ V P
Sbjct: 182 NGQKPPGAAEQMTVKFAASP 201
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 143 (55.4 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++G + D+ L + G V +A VI D+ TGRSR F FV + AN I++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 143 LNGTEIGGREIKVNI-TEK 160
++G E+ GR+I+VN+ TE+
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 112 (44.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXX 242
K++VG L+ LK+ F+ G+V A V+ T +S GFGFV+F
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 243 LNNSLLEGQRIRVNKA 258
++ L G++IRVN A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 143 (55.4 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+GN+P +E+ G V ++YD+ TGR R FAFV A +E+L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 144 NGTEIGGREIKVNITEK 160
NG GR ++VN K
Sbjct: 68 NGVAFNGRNLRVNYANK 84
Score = 96 (38.9 bits), Expect = 0.00015, P = 0.00015
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXX 241
+ VYVGN+ T E + F+ G V + +++ T + GF FV F
Sbjct: 6 FSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVE 65
Query: 242 XLNNSLLEGQRIRVNKA 258
LN G+ +RVN A
Sbjct: 66 QLNGVAFNGRNLRVNYA 82
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 162 (62.1 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 47/175 (26%), Positives = 81/175 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D+ G ++ + FV +VE ANA IE +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHV 228
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + + KV + + S ++A +NF + VY+ NL +T + F
Sbjct: 229 NGMLLNDK--KVYVGHHVSRRERQSKVEALKANFTN----VYIKNLDTEITEQEFSDLFG 282
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ G++ S +++ K GFGFV + LN+ +G+++ V +A
Sbjct: 283 QFGEITSLSLVK-DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA 336
Score = 153 (58.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 52/197 (26%), Positives = 86/197 (43%)
Query: 63 AEETAX-XXXXXVDTPSEFA---RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKY 118
+E T+ V TPS A +Y+G + ++ L ++ G V V D
Sbjct: 57 SESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAV 116
Query: 119 TGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFV 178
T RS +A+V +ED +++LN T I GR ++ +++ D SL + N
Sbjct: 117 TRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR-----DPSLRKMGTGN-- 169
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXX 238
V++ NL + ++ L FS G++LS KV V + G+GFV F
Sbjct: 170 -----VFIKNLDPAIDNKALHDTFSAFGKILSCKVA-VDELGNAKGYGFVHFDSVESANA 223
Query: 239 XXXXLNNSLLEGQRIRV 255
+N LL +++ V
Sbjct: 224 AIEHVNGMLLNDKKVYV 240
Score = 148 (57.2 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 45/176 (25%), Positives = 77/176 (43%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N+ I E + + + G + ++ D+ + R F FV E A +++L
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N E G+++ V +K + + + E + Y+ +++ NL V E LK
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
FS G + SAK++ KS GFGFV + +N +L G+ + V
Sbjct: 382 AEFSAFGTITSAKIM-TDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 160 (61.4 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 45/181 (24%), Positives = 81/181 (44%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E R ++IG++ +D + LT + G + +VI +K TG+ + F+ + A
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
++ NGT++ G E+ + Q D+ + ++VG+LA VT +L
Sbjct: 81 TLQTYNGTQMPGTELTFRLN-----WASFGSGQKVDAG---PDHSIFVGDLAPDVTDYLL 132
Query: 199 KKCFS-EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
++ F V AKV+ P T +S G+GFV F +N + +R++
Sbjct: 133 QETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISA 192
Query: 258 A 258
A
Sbjct: 193 A 193
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 160 (61.4 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 41/175 (23%), Positives = 80/175 (45%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ +Y+GN+ ++ D L + G V+ ++I + G +AF+ + A +
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREP--GNDP-YAFIEYSNYQAATTALT 63
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +EIKVN P Q + S + ++VG+L+ + +E L++
Sbjct: 64 AMNKRLFLEKEIKVNWATSPGNQPKTD---------ISSHHHIFVGDLSPEIETETLREA 114
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
F+ G++ + +++R P T KS G+ FV+F +N + + IR N
Sbjct: 115 FAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTN 169
Score = 116 (45.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 31/127 (24%), Positives = 60/127 (47%)
Query: 40 LSYSLHNLKTASIEDSTTRLFAVAEETAXXXXXXVDTP-SEFA--RRVYIGNIPRNIDND 96
+ YS + T ++ RLF E + P ++ + +++G++ I+ +
Sbjct: 50 IEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETE 109
Query: 97 ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFV-MMKTVEDANAVIEKLNGTEIGGREIKV 155
L + G + ++ D +T +S+ +AFV +K E NA I+ +NG IG R I+
Sbjct: 110 TLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENA-IQAMNGQWIGSRSIRT 168
Query: 156 NITEKPL 162
N + + L
Sbjct: 169 NWSTRKL 175
Score = 56 (24.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 184 VYVGNLAKTVTSE-MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXX 242
VY G V S+ ++ K F + G + +V K GF F+ F
Sbjct: 223 VYCGGFPPNVISDDLMHKHFVQFGPIQDVRVF------KDKGFSFIKFVTKEAAAHAIEH 276
Query: 243 LNNSLLEGQRIR 254
+NS + G ++
Sbjct: 277 THNSEVHGNLVK 288
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 160 (61.4 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 49/177 (27%), Positives = 83/177 (46%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
VD S A + I +P+++ + EL + G + +++ D TG S + FV KT
Sbjct: 87 VDRTS--ATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTE 144
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
D+ I+KLNG + + +KV+ +P Q +D+N +YV NL++ +
Sbjct: 145 SDSEDAIQKLNGFYVRNKRLKVSYA-RPGGQ------SIKDTN-------LYVINLSRNI 190
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
+ML + FS G ++ +LR T + G FV + LNN++ EG
Sbjct: 191 NDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEG 247
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 39/124 (31%), Positives = 59/124 (47%)
Query: 42 YSLHNLKTAS-IEDSTTRL--FAVAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDEL 98
Y + KT S ED+ +L F V + S +Y+ N+ RNI++D L
Sbjct: 136 YGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDML 195
Query: 99 TKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT--EIGGREIKVN 156
+I +G + + ++ DK TGR R AFV E+A I+ LN T E G + I V
Sbjct: 196 DRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVR 255
Query: 157 ITEK 160
+ E+
Sbjct: 256 LAEE 259
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 161 (61.7 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ R IDN + G + +V D G S+ + FV +T A IEK+
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKV 205
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + +++ V + P Q + + +S + V+V N + + E L FS
Sbjct: 206 NGMLLSDKKVYVGKFQ-PRAQ---RMKELGESGLKYT--NVFVKNFGEHLDQEKLSAMFS 259
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
+ G++ SA V+ K GFGFV F LN+S+LEG
Sbjct: 260 KFGEITSAVVM-TDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEG 305
Score = 149 (57.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 44/178 (24%), Positives = 83/178 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N ++D ++L+ + + G + A V+ D G+ + F FV + A +EKL
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKL 298
Query: 144 NGTEIGGREIKVNIT---EKPLVQVDLSL-LQAEDSNFVD--SPYKVYVGNLAKTVTSEM 197
N + + G + K+++ +K +L +A V +YV N+ + + +
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDG 358
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
L+ FS G + SAKV+ V +S GFGFV F +N+ ++ + + V
Sbjct: 359 LRDHFSSFGTITSAKVM-VDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYV 415
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 40/174 (22%), Positives = 76/174 (43%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YIG++ ++ L + G V V D + S +A+V + DA ++ +
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR +++ +++ D + +A + N +++ NL + + ++ + FS
Sbjct: 119 NFEVIHGRPMRIMWSQR-----DPAARRAGNGN-------IFIKNLDRVIDNKSVYDTFS 166
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV S G+GFV F +N LL +++ V K
Sbjct: 167 LFGNILSCKVA-TDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGK 219
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 141 (54.7 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXX 242
+VYVGNL+ T T +ML++ FS G V+ A V+R T +S GFGFVT+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 243 LNNSLLEGQRIRV 255
++ L G+R+ V
Sbjct: 64 MDGKELNGRRVSV 76
Score = 136 (52.9 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A RVY+GN+ +D L + +G V A V+ D+YT RSR F FV + +A A +
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 141 EKLNGTEIGGREIKVNI 157
++G E+ GR + V +
Sbjct: 62 SGMDGKELNGRRVSVKL 78
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 141 (54.7 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+GN P +EL G + ++ D+ TGR R FAF+ A +E++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 144 NGTEIGGREIKVNITEK 160
NG E GR ++VN+ K
Sbjct: 67 NGAEFNGRPLRVNLANK 83
Score = 100 (40.3 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXX 241
+ VYVGN T E L FS GQ+ + +++ T + GF F+ F
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 242 XLNNSLLEGQRIRVNKA 258
+N + G+ +RVN A
Sbjct: 65 QMNGAEFNGRPLRVNLA 81
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 161 (61.7 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 52/177 (29%), Positives = 82/177 (46%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR + N+P + DEL ++ ++ AVE V D G+S+ A++ KT DA +
Sbjct: 405 ARTLLAKNLPYKVTQDELKEVFED--AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTL 459
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E+ GTEI GR I + T + D ++S + + + NLA + T E L++
Sbjct: 460 EEKQGTEIDGRSISLYYTGEKGQNQDFR--GGKNSTWSGESKTLVLSNLAYSATEETLQE 517
Query: 201 CFSEKGQVLSAKVLRVPGTS--KSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
F EK A ++VP KS G+ F+ F N +EG+ IR+
Sbjct: 518 VF-EK-----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 568
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 40/153 (26%), Positives = 67/153 (43%)
Query: 109 EKAEVIY--DKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVD 166
EKA I G+S+ +AF+ + EDA + N EI GR I++ + + P
Sbjct: 520 EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL-QGP----- 573
Query: 167 LSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
N P K ++V L++ T E LK+ F G + A+++ T S GF
Sbjct: 574 -----RGSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGF 625
Query: 226 GFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
GFV F + + ++G ++ ++ A
Sbjct: 626 GFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 658
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 158 (60.7 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 43/146 (29%), Positives = 75/146 (51%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYT-GRSRRFAFVMMKTVEDANAVIEKLN 144
+ +P+N+ +EL + G +E +++ DK T G+S + FV +DA I LN
Sbjct: 70 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLN 129
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G + + IKV+ +P S D+N +YV L KT+T + L++ FS+
Sbjct: 130 GLRLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMTQKELEQLFSQ 175
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTF 230
G+++++++L T S G GF+ F
Sbjct: 176 YGRIITSRILVDQVTGVSRGVGFIRF 201
Score = 112 (44.5 bits), Expect = 0.00055, P = 0.00055
Identities = 35/148 (23%), Positives = 65/148 (43%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + G I V P +V+ ++L S SP + Y G LA+ L
Sbjct: 215 NGQKPPGATEPITVKFANNPSQKVNHTIL----SQLYQSPNRRYPGPLAQQAQRFRLDNL 270
Query: 202 FSEK-GQVLSA-KVLRVPGTSKSSGFGF 227
+ G + S + + G + +G F
Sbjct: 271 LNMAYGGIKSRFSPMAIDGMTSLAGINF 298
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 158 (60.7 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 44/176 (25%), Positives = 79/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + L ++ + G V + D+ TG+ + + FV + EDA+ I+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ I+VN A + N +D +++GNL + ++L FS
Sbjct: 75 NMIKLYGKPIRVNKAS------------AHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R P T S G+ F+ F +N L + I V+ A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 138 (53.6 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 46/177 (25%), Positives = 81/177 (45%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
RRVY+GN+ + EL + + + G V E++ + G S+ A + T E+A I+
Sbjct: 77 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEARTAIK 135
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQ-AEDSNFVDS-PYK-VYVGNLAKTVTSEML 198
L+ + GR + + + + S + + SN DS P + ++VGNL V + L
Sbjct: 136 TLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDL 195
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
K F + G V+ A + ++ +S G G V L+N+ G+ + V
Sbjct: 196 KDLFRQAGSVIRADI-QMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEV 251
Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P + L + + G+V +A + Y+ TGRS+ F V + DA + IEKL
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 144 NGTEIGGREIKVN 156
NG GGR ++++
Sbjct: 371 NGYRYGGRPLQLS 383
Score = 117 (46.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 24/80 (30%), Positives = 51/80 (63%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE R++++GN+P N+ +L + ++ G+V +A++ ++ GRSR V+M ++++A
Sbjct: 175 SEPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQ-EGRSRGIGIVVMSSMKEAM 233
Query: 138 AVIEKLNGTEIGGREIKVNI 157
I+ L+ T+ GR ++V +
Sbjct: 234 HAIQMLHNTDFMGRTLEVRL 253
Score = 88 (36.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
+YVGNL + L F++ G V+ A++ P T +S GFG V F L
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 244 NNSLLEGQRIRVNKA 258
N G+ ++++ A
Sbjct: 371 NGYRYGGRPLQLSYA 385
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 44/176 (25%), Positives = 79/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + L ++ + G V + D+ TG+ + + FV + EDA+ I+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ I+VN A + N +D +++GNL + ++L FS
Sbjct: 75 NMIKLYGKPIRVNKAS------------AHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R P T S G+ F+ F +N L + I V+ A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/176 (25%), Positives = 79/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + L ++ + G V + D+ TG+ + + FV + EDA+ I+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ I+VN A + N +D +++GNL + ++L FS
Sbjct: 75 NMIKLYGKPIRVNKAS------------AHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R P T S G+ F+ F +N L + I V+ A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/176 (25%), Positives = 79/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + L ++ + G V + D+ TG+ + + FV + EDA+ I+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ I+VN A + N +D +++GNL + ++L FS
Sbjct: 75 NMIKLYGKPIRVNKAS------------AHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R P T S G+ F+ F +N L + I V+ A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/176 (25%), Positives = 79/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + L ++ + G V + D+ TG+ + + FV + EDA+ I+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ I+VN A + N +D +++GNL + ++L FS
Sbjct: 75 NMIKLYGKPIRVNKAS------------AHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R P T S G+ F+ F +N L + I V+ A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/176 (25%), Positives = 79/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + L ++ + G V + D+ TG+ + + FV + EDA+ I+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ I+VN A + N +D +++GNL + ++L FS
Sbjct: 75 NMIKLYGKPIRVNKAS------------AHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R P T S G+ F+ F +N L + I V+ A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/176 (25%), Positives = 79/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + L ++ + G V + D+ TG+ + + FV + EDA+ I+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ I+VN A + N +D +++GNL + ++L FS
Sbjct: 75 NMIKLYGKPIRVNKAS------------AHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R P T S G+ F+ F +N L + I V+ A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/176 (25%), Positives = 79/176 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + L ++ + G V + D+ TG+ + + FV + EDA+ I+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ I+VN A + N +D +++GNL + ++L FS
Sbjct: 75 NMIKLYGKPIRVNKAS------------AHNKN-LDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R P T S G+ F+ F +N L + I V+ A
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>DICTYBASE|DDB_G0284167 [details] [associations]
symbol:DDB_G0284167 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000063 eggNOG:COG0724 RefSeq:XP_638767.1
ProteinModelPortal:Q54Q30 STRING:Q54Q30 EnsemblProtists:DDB0233340
GeneID:8624438 KEGG:ddi:DDB_G0284167 InParanoid:Q54Q30 OMA:DASANNE
Uniprot:Q54Q30
Length = 293
Score = 139 (54.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
+ TP+ A R+++GN+ N+++ L E G V +I K+ +S F FV M+ +
Sbjct: 9 ITTPTTPAHRIFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKF--KSNTFGFVDMEDL 66
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEK 160
E AN + +NG E G+++ V I +
Sbjct: 67 ETANKAVAAINGREFDGKQVNVEIARE 93
Score = 52 (23.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V N+ + L + F + SA V+ T++S GFGFV F L
Sbjct: 202 LFVRNIPYSFDDVKLLETFKDCSPK-SAHVIVNKHTNRSKGFGFVEFDDVANQQKGLT-L 259
Query: 244 NNSLLEGQRIRVNKA 258
N +E + + V A
Sbjct: 260 NKLSVESRELSVKIA 274
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 155 (59.6 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 41/145 (28%), Positives = 70/145 (48%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ DEL + G VE A++I DK G S + FV +DA I LNG
Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG 83
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+ +P + +D+N +Y+ L +T+T + ++ F
Sbjct: 84 LRLQSKTIKVSFA-RPSSET------IKDAN-------LYISGLPRTMTQKDVEDMFLPF 129
Query: 206 GQVLSAKVLRVPGTSKSSGFGFVTF 230
G +++++VL T S G F+ F
Sbjct: 130 GHIINSRVLVDQATGLSRGVAFIRF 154
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 157 (60.3 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 46/172 (26%), Positives = 77/172 (44%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + I +P+ + +E+ + G +E +++ DK TG+S + FV EDA
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 98
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ NG + + IKV+ +P S Q + SN +YV + K++T L
Sbjct: 99 AVSSFNGLRLQNKTIKVSYA-RP------SNDQIKGSN-------LYVSGIPKSMTLHEL 144
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEG 250
+ F GQ++++++L T S G GFV F LN S+ G
Sbjct: 145 ESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
Score = 96 (38.9 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ IP+++ EL I + G + + ++ D TG S+ FV ++A+ I+ L
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 144 NGTEIGG--REIKVNITEKP 161
NG+ G +I V P
Sbjct: 190 NGSIPSGCSEQITVKFANNP 209
Score = 84 (34.6 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXX 241
Y ++V NL+ +L + FS+ G +++ K+LR T + G+ FV+
Sbjct: 374 YCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILR-DLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 242 XLNNSLLEGQRIRV 255
LN + L G+ ++V
Sbjct: 433 SLNGTNLAGKTLQV 446
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 56/183 (30%), Positives = 82/183 (44%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIY-DKYTGRSRRFAFVMMKTVED 135
PS R VY+GNI + L +I G VE +++I DK + + FV
Sbjct: 55 PST-CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRS 108
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A I LNG + G+ IKVN + Q ED++ S + ++VG+L+ VT
Sbjct: 109 AALAILSLNGRHLFGQPIKVNWA--------YATGQREDTS---SHFNIFVGDLSPEVTD 157
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
L + FS A+V+ T +S GFGFV+F +N L ++IR
Sbjct: 158 ATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRC 217
Query: 256 NKA 258
N A
Sbjct: 218 NWA 220
Score = 123 (48.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT S F +++G++ + + L + + A V++D+ TGRSR F FV + +
Sbjct: 139 DTSSHF--NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD 179
DA I ++NG + R+I+ N K D L ++ + V+
Sbjct: 197 DAQTAINEMNGKWLSSRQIRCNWATKGATSGD-DKLSSDGKSVVE 240
Score = 68 (29.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
VYVGNLA VT L + F L A V+ + GFGFV +
Sbjct: 267 VYVGNLAPEVTQLDLHRYF----HALGAGVIEEVRVQRDKGFGFVRY 309
>CGD|CAL0006311 [details] [associations]
symbol:orf19.2261 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0006311 GO:GO:0000166
EMBL:AACQ01000095 EMBL:AACQ01000096 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG282907 KO:K12831 RefSeq:XP_714789.1
RefSeq:XP_714851.1 ProteinModelPortal:Q59Z39 STRING:Q59Z39
GeneID:3643500 GeneID:3643580 KEGG:cal:CaO19.2261
KEGG:cal:CaO19.9801 Uniprot:Q59Z39
Length = 259
Score = 151 (58.2 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 43/195 (22%), Positives = 86/195 (44%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
+D+ +Y GNI + + ++ + G V+ + D+ + + FV K
Sbjct: 9 LDSDRNIDASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNS 68
Query: 134 EDANAVIEKLNGTEIGGREIKV--------NITEKPLVQVDLSLLQAE--DSNFVDSPYK 183
DA +E L G + G+ +K+ + T P Q + +Q++ + N++D K
Sbjct: 69 ADAKYTMEILRGIRLYGKALKLKRIDAKSQSSTNNPNNQTIGTFVQSDLINPNYIDVGAK 128
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
+++ NL V L FS+ G ++ ++R S G+GF+T+ +
Sbjct: 129 LFINNLNPLVDESFLMDTFSKFGTLIRNPIIRRDSEGHSLGYGFLTYDDFESSDLCIQKM 188
Query: 244 NNSLLEGQRIRVNKA 258
NN++L +I ++ A
Sbjct: 189 NNTILMNNKITISYA 203
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 137 (53.3 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 34/131 (25%), Positives = 65/131 (49%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQV 208
+K F+ G++
Sbjct: 122 IKAAFAPFGRI 132
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 155 (59.6 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 47/183 (25%), Positives = 89/183 (48%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P+E R ++IG++ +D + L+ G + A+VI +K TG+S + F+ ++ A
Sbjct: 80 PNE-VRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAA 138
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+++ NGT + N+ + +++ + L A + + + ++VG+LA VT
Sbjct: 139 ETILQTYNGT------LMPNVEQN--FRMNWASLGAGERRDDSAEHTIFVGDLAADVTDY 190
Query: 197 MLKKCF-SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+L++ F S V AKV+ T +S G+GFV F +N L + +R+
Sbjct: 191 ILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRI 250
Query: 256 NKA 258
A
Sbjct: 251 GPA 253
Score = 141 (54.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 44/179 (24%), Positives = 84/179 (46%)
Query: 84 VYIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+++G++ ++ + L + + + +V A+V+ D+ TGRS+ + FV + + +
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTE 237
Query: 143 LNGTEIGGREIKVN--ITEKPLVQVDLSLLQAEDSNFVDS-PYK--VYVGNLAKTVTSEM 197
+NG R +++ +KP+ + Q + +S P ++VG L TV E
Sbjct: 238 MNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEH 297
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
L++ FS G+++ K+ V G GFV F LN + L GQ IR++
Sbjct: 298 LRQVFSPYGELVHVKI--VAGKR----CGFVQFGTRASAEQALSSLNGTQLGGQSIRLS 350
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 110 (43.8 bits), Expect = 0.00096, P = 0.00096
Identities = 40/161 (24%), Positives = 72/161 (44%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE-----DANAVI 140
+ +P+N+ +EL + G +E +++ DK TG R F E D+ ++
Sbjct: 53 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSLFEKWRPLDSEVIV 112
Query: 141 EKLNGTEIG-G--REIKVNITEKPLVQVDLSLLQ--------AEDSNFVDSPYKVYVGNL 189
+G G I EK + ++ LQ A S+ +YV L
Sbjct: 113 LGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 172
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
KT+T + L++ FS+ G+++++++L T S G GF+ F
Sbjct: 173 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 213
Score = 108 (43.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + EL ++ ++G + + ++ D+ TG SR F+ +A I+ L
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
Query: 144 NGTEIGG--REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
NG + G I V P + + ++L S SP + Y G LA+
Sbjct: 227 NGQKPPGATEPITVKFANNPSQKTNQAIL----SQLYQSPNRRYPGPLAQ 272
Score = 92 (37.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NLA +L + F G V + KV+R T+K GFGFVT L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 379 NGYRL-GDRV 387
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 154 (59.3 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 54/182 (29%), Positives = 80/182 (43%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS R VY+GNI + L ++ G VE ++I + + + FV A
Sbjct: 50 PST-CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSA 104
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
I LNG + G+ IKVN + Q ED++ S + ++VG+L+ VT
Sbjct: 105 GLAILSLNGRHLFGQPIKVNWA--------YASGQREDTS---SHFNIFVGDLSPEVTDA 153
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
ML CFS A+V+ T +S GFGFV+F + L ++IR N
Sbjct: 154 MLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCN 213
Query: 257 KA 258
A
Sbjct: 214 WA 215
Score = 122 (48.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT S F +++G++ + + L + A V++D+ TGRSR F FV + +
Sbjct: 134 DTSSHF--NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
Query: 135 DANAVIEKLNGTEIGGREIKVNITEK 160
DA I+++ G +G R+I+ N K
Sbjct: 192 DAQTAIDEITGKWLGSRQIRCNWATK 217
Score = 68 (29.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
VYVGNLA V+ L + F G A V+ + GFGFV +
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMG 317
Query: 244 N-NSLLEGQRIR 254
N +S L G++++
Sbjct: 318 NTHSYLSGRQMK 329
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 153 (58.9 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 48/184 (26%), Positives = 81/184 (44%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR--------FA 126
D PS+ + I +P+N+ +EL + G VE A++I DK G S +
Sbjct: 49 DEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYG 108
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA I LNG + + IKV+ +P S +D+N +Y+
Sbjct: 109 FVNYVNPSDAERAINTLNGLRLQSKTIKVSYA-RP------SSDGIKDAN-------LYI 154
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
L KT+T + ++ F++ G+++++++L + S G F+ F LN S
Sbjct: 155 SGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS 214
Query: 247 LLEG 250
G
Sbjct: 215 KPSG 218
Score = 95 (38.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 27/94 (28%), Positives = 43/94 (45%)
Query: 163 VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKS 222
+ VD S+ ++ S + ++V NL + +L + F G V + KV+R TSK
Sbjct: 267 MSVDHSVSSMNVASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKC 326
Query: 223 SGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
GFGFVT LN L + ++V+
Sbjct: 327 KGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQVS 360
Score = 88 (36.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 16/74 (21%), Positives = 37/74 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI +P+ + + + ++G + + ++ D+ +G SR AF+ +A I+ L
Sbjct: 152 LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDL 211
Query: 144 NGTEIGGREIKVNI 157
NG++ G + +
Sbjct: 212 NGSKPSGASEPITV 225
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 155 (59.6 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 49/203 (24%), Positives = 90/203 (44%)
Query: 63 AEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
AEE T + +++GN+ N+ + L + ++ G + A ++ ++ TGRS
Sbjct: 258 AEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRS 316
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSN----F 177
R F +V DA E + EI GR+I ++ T +P D + N F
Sbjct: 317 RGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRP-ANKDQGGFKERAQNRARSF 375
Query: 178 VD--SPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXX 233
D SP ++VGNL + + + + F +G VL ++ + + GFG+V +
Sbjct: 376 GDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSV 435
Query: 234 XXXXXXXXXLNNSLLEGQRIRVN 256
L + ++G+ IR++
Sbjct: 436 DEARKAYNELQGAEIDGRPIRLD 458
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 149 (57.5 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 43/152 (28%), Positives = 70/152 (46%)
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLV-----Q 164
A V+ D TG+S+ + FV DA I + G +GGR+I+ N T KP +
Sbjct: 3 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 62
Query: 165 VDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKS 222
+ L+ ED SP VY G +A +T +++++ FS GQ++ +V P
Sbjct: 63 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--P----E 116
Query: 223 SGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIR 254
G+ FV F +N + +EG ++
Sbjct: 117 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 148
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 153 (58.9 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 46/176 (26%), Positives = 76/176 (43%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G + + L +++ + G V + D+ T + F FV EDA+ I+ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ IKVN A + N +D ++VGNL V ++L FS
Sbjct: 75 NMIKLYGKPIKVNKAS------------AHEKN-MDVGANIFVGNLDPEVDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R + S GF F+ F +N L + I V+ A
Sbjct: 122 AFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 153 (58.9 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 46/176 (26%), Positives = 76/176 (43%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G + + L +++ + G V + D+ T + F FV EDA+ I+ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ IKVN A + N +D ++VGNL V ++L FS
Sbjct: 75 NMIKLYGKPIKVNKAS------------AHEKN-MDVGANIFVGNLDPEVDEKLLYDTFS 121
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +L K++R + S GF F+ F +N L + I V+ A
Sbjct: 122 AFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 156 (60.0 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 53/178 (29%), Positives = 82/178 (46%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR + N+P + DEL ++ ++ AVE V D G+S+ A++ KT DA
Sbjct: 397 ARTLLAKNLPYKVTQDELKEVFED--AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTF 451
Query: 141 EKLNGTEIGGREIKVNIT-EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
E+ GTEI GR I + T EK Q ++S + + + NL+ + T E L+
Sbjct: 452 EEKQGTEIDGRSISLYYTGEKGQSQ---DYRGGKNSTWSGESKTLVLSNLSYSATEETLQ 508
Query: 200 KCFSEKGQVLSAKVLRVPGTS--KSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ F EK A ++VP KS G+ F+ F N +EG+ IR+
Sbjct: 509 EVF-EK-----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 560
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 44/170 (25%), Positives = 73/170 (42%)
Query: 92 NIDNDELTKIVQEHGAVEKAEVIY--DKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149
N+ + +QE EKA I G+S+ +AF+ + EDA + N EI
Sbjct: 497 NLSYSATEETLQE--VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 554
Query: 150 GREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKCFSEKGQV 208
GR I++ + + P N P K ++V L++ T E LK+ F G V
Sbjct: 555 GRAIRLEL-QGP----------RGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 601
Query: 209 LSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
A+++ T S GFGFV F + + ++G ++ ++ A
Sbjct: 602 -RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 650
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 154 (59.3 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 51/180 (28%), Positives = 80/180 (44%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKY-TGRSRRFAFVMMKTVED 135
SE R++IGNIP+N DE K++++ G VE E+I D T R+R FAFV+
Sbjct: 192 SETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNAC 251
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A+ +K+ + +++ N P V E S +YV N+ + ++
Sbjct: 252 ADYSRQKMIDSNF---KLEGNA---PTVTWADPKSSPEHSAAAAQVKALYVKNIPENTST 305
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
E LK+ F G+V K++ PG FGFV + + GQ + V
Sbjct: 306 EQLKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEV 363
Score = 129 (50.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+IG +PR++ ++L + +E G + + ++ D+ +G S+ +AFV KT + A IE+L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 144 NGTEIGGREIKVNITE 159
+ E G+ I+ +++E
Sbjct: 178 HSKEFKGKTIRCSLSE 193
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 149 (57.5 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 42/169 (24%), Positives = 72/169 (42%)
Query: 93 IDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152
+ D + + G ++ ++ +D T + + FAFV + E A +E++N +GGR
Sbjct: 5 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 64
Query: 153 IKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG---NLAKTVTSEMLKKCFSEKGQVL 209
IKV K + FV P + L + ++ + +K F G++
Sbjct: 65 IKVRQGAKASIPQACRAAPPRKP-FVAGPGLTGLSISPPLPQDLSDDDIKSVFEAFGKIK 123
Query: 210 SAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S + R P T K G+GF+ + +N L GQ +RV KA
Sbjct: 124 SCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 172
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 150 (57.9 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 49/206 (23%), Positives = 94/206 (45%)
Query: 55 STTRLFAVAEETAXXXXXXVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEV 113
STT V E ++ E ++ R+ N+P +++ + +++G+V E+
Sbjct: 66 STTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEM 125
Query: 114 IYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAE 173
K R+R F+ M + E+A ++ L E GR +KV+ + + + E
Sbjct: 126 SMHKKE-RNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAK---TKKKKTYAPRE 181
Query: 174 DSNFVDSPYKVYVGNLAKTVTSEMLKKCF-SEKGQVLSAKVLRVPGTSKSSGFGFVTFXX 232
+ V + + ++V NLA ++ LK+ F ++ G V+S +V+ +SSG+GFV+F
Sbjct: 182 TPSPVPT-FNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 233 XXXXXXXXXXLNNSLLEGQRIRVNKA 258
G+ IR+ K+
Sbjct: 241 KKQAEAALIEFQGKDFLGRPIRLAKS 266
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 155 (59.6 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 53/178 (29%), Positives = 83/178 (46%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR + N+P + DEL ++ ++ AVE V D G+S+ A++ KT DA +
Sbjct: 402 ARTLLAKNLPYKVTQDELKEVFED--AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTL 456
Query: 141 EKLNGTEIGGREIKVNIT-EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
E+ GTEI GR I + T EK Q ++S + + + NL+ + T E L+
Sbjct: 457 EEKQGTEIDGRSISLYYTGEKGQSQDHRG---GKNSTWSGESKTLVLSNLSYSATEETLQ 513
Query: 200 KCFSEKGQVLSAKVLRVPGTS--KSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
+ F EK A ++VP KS G+ F+ F N +EG+ IR+
Sbjct: 514 EVF-EK-----ATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 565
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 43/170 (25%), Positives = 73/170 (42%)
Query: 92 NIDNDELTKIVQEHGAVEKAEVIY--DKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149
N+ + +QE EKA I G+S+ +AF+ + EDA + N EI
Sbjct: 502 NLSYSATEETLQE--VFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 559
Query: 150 GREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKCFSEKGQV 208
GR I++ + + P N P K ++V L++ T E LK+ F G +
Sbjct: 560 GRAIRLEL-QGP----------RGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSI 606
Query: 209 LSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
A+++ T S GFGFV F + + ++G ++ ++ A
Sbjct: 607 -RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 655
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 151 (58.2 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYIGN+ + + + +++ + G + + D+ T + + FV + EDA +
Sbjct: 15 VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + G+ I+VN A+ V+ +++VGNL VT ++L FS
Sbjct: 75 NGIRLYGKPIRVNKAS------------ADKQKSVEIGAELFVGNLDPMVTEQVLYDTFS 122
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
G +++ KV R ++ S G+GFV+F +N L +++ V A
Sbjct: 123 RFGNLVNLPKVAR-DDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYA 177
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 152 (58.6 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 42/179 (23%), Positives = 85/179 (47%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++++G + R + E K ++G + + ++ D+ TG+ R F FV T D++ V
Sbjct: 41 AGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFV---TYADSSVVD 97
Query: 141 EKLNGTEIG-GREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+ + I G+++++ T + + + D F K++VG + +V + K
Sbjct: 98 KVIQDNHIIIGKQVEIKRT------IPRGSMSSND--FKTK--KIFVGGIPSSVDDDEFK 147
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ F + G++ +++R T +S GFGFVT+ N L G ++ + KA
Sbjct: 148 EFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKA 206
Score = 129 (50.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 23/82 (28%), Positives = 50/82 (60%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+++++G IP ++D+DE + + G +++ +++ D TGRSR F FV ++ + + ++
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 142 KLNGTEIGGREIKVNITE--KP 161
K N E+ G ++++ E KP
Sbjct: 190 KGNRIELSGTQVEIKKAEPKKP 211
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 133 (51.9 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+GN P D+L + G V ++ D+ TGR R FAFV A +++
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 144 NGTEIGGREIKVNITE 159
NG + GR ++VN+ +
Sbjct: 66 NGVDFNGRALRVNLAQ 81
Score = 96 (38.9 bits), Expect = 0.00015, P = 0.00015
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXX 239
S + VYVGN T + L FS+ G V + +++ T + GF FV F
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 240 XXXLNNSLLEGQRIRVNKA 258
N G+ +RVN A
Sbjct: 62 VDQFNGVDFNGRALRVNLA 80
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 133 (51.9 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+GN P D+L + G V ++ D+ TGR R FAFV A +++
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 144 NGTEIGGREIKVNITE 159
NG + GR ++VN+ +
Sbjct: 66 NGVDFNGRALRVNLAQ 81
Score = 96 (38.9 bits), Expect = 0.00015, P = 0.00015
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXX 239
S + VYVGN T + L FS+ G V + +++ T + GF FV F
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 240 XXXLNNSLLEGQRIRVNKA 258
N G+ +RVN A
Sbjct: 62 VDQFNGVDFNGRALRVNLA 80
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 133 (51.9 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 97 ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156
+L ++ +G + V+YD+ TGRSR FAFV + ++D+ +E+ NG E+ GR I+V+
Sbjct: 33 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 92
Query: 157 --ITEK 160
IT++
Sbjct: 93 YSITKR 98
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 133 (51.9 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 97 ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156
+L ++ +G + V+YD+ TGRSR FAFV + ++D+ +E+ NG E+ GR I+V+
Sbjct: 33 DLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 92
Query: 157 --ITEK 160
IT++
Sbjct: 93 YSITKR 98
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 152 (58.6 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 36/103 (34%), Positives = 59/103 (57%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R V++GNIP ++L +I E G V ++++D+ +G+ + F F K E A + +
Sbjct: 16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMR 75
Query: 142 KLNGTEIGGREIKVN--ITEKPLVQVDLSLLQAEDSNFVDSPY 182
LNG EIGGR ++V+ TEK +++ LLQ V++PY
Sbjct: 76 NLNGYEIGGRTLRVDNACTEKSRMEMQ-QLLQGPQ---VENPY 114
Score = 122 (48.0 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 171 QAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
+A++ + +D + V+VGN+ T E LK+ FSE G VLS K++ + K GFGF
Sbjct: 4 KAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCE 63
Query: 230 FXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
+ LN + G+ +RV+ A
Sbjct: 64 YKDQETALSAMRNLNGYEIGGRTLRVDNA 92
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 152 (58.6 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+ + DE+ + G VE ++I DK TG+S + FV EDA I LNG
Sbjct: 114 VNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNG 173
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
+ + IKV+I +P S + +N +YV L K +T L+ FS
Sbjct: 174 LRLQNKTIKVSIA-RP------SSESIKGAN-------LYVSGLPKNMTQSDLESLFSPY 219
Query: 206 GQVLSAKVL--RVPG---TSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
G+++++++L + G S G GF+ F LN +
Sbjct: 220 GKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGT 265
Score = 93 (37.8 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 30/104 (28%), Positives = 43/104 (41%)
Query: 150 GREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 209
GR V PL ++ + + S + ++V NLA +L + F G V
Sbjct: 329 GRYSSVISRYSPLTSDLITNGMIQGNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQ 388
Query: 210 SAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRI 253
S KV+R ++K GFGFVT LN L G R+
Sbjct: 389 SVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTL-GNRV 431
Score = 78 (32.5 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR-----SRRFAFVMMKTVEDANA 138
+Y+ +P+N+ +L + +G + + ++ D TG S+ F+ +A+
Sbjct: 198 LYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADR 257
Query: 139 VIEKLNGT 146
I++LNGT
Sbjct: 258 AIKELNGT 265
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 40/146 (27%), Positives = 76/146 (52%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
+ +P+N+ +E + G +E +++ DK TG+S + FV DA+ I LNG
Sbjct: 42 VNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNG 101
Query: 146 TEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK 205
++ + IKV+ +P S D+N +YV L KT++ + +++ FS+
Sbjct: 102 LKLQTKTIKVSYA-RP------SSASIRDAN-------LYVSGLPKTMSQKDMEQLFSQY 147
Query: 206 GQVLSAKVLRVPGTSK-SSGFGFVTF 230
G+++++++L T+ S G GF+ F
Sbjct: 148 GRIITSRILVDQVTAGISRGVGFIRF 173
Score = 89 (36.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 21/90 (23%), Positives = 44/90 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYT-GRSRRFAFVMMKTVEDANAVIEK 142
+Y+ +P+ + ++ ++ ++G + + ++ D+ T G SR F+ +A I+
Sbjct: 126 LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKG 185
Query: 143 LNGTE-IGGRE-IKVNITEKPLVQVDLSLL 170
LNG + +G E I V P + +LL
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQKTGQALL 215
Score = 87 (35.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXL 243
++V NL+ +L + F G V + KV+R T+K GFGFVT L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 338 NGYRL-GDRV 346
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G++ NI D L I + G ++ ++I D TGRS+ + F+ +DA +E+
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
Query: 143 LNGTEIGGREIKV-NITEK 160
LNG E+ GR +KV N+TE+
Sbjct: 396 LNGFELAGRLMKVGNVTER 414
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 45/183 (24%), Positives = 80/183 (43%)
Query: 76 TPSEF-ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+P E AR V+ + + + +L + G V +I T R + A++ E
Sbjct: 230 SPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPE 289
Query: 135 DANAVIEKLNGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
A+ L+G + G I V T EK +Q Q + P ++YVG+L
Sbjct: 290 SV-ALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHT---GPMRLYVGSLHFN 345
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+T +ML+ F G++ + +++ T +S G+GF+T+ LN L G+
Sbjct: 346 ITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRL 405
Query: 253 IRV 255
++V
Sbjct: 406 MKV 408
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 150 (57.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 42/178 (23%), Positives = 85/178 (47%)
Query: 84 VYIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ ++ + LT+ + + +V+ A+V+ D+ TGRS+ + FV + + +
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 143 LNGTEIGGREIKVN--ITEKPLVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEML 198
+NG R ++ +KPL S + ++ P ++VG + ++VT + L
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
K F + G+++ K+ P + GFV + LN + L GQ IR++
Sbjct: 295 KSVFGQFGELVHVKI---PAGKRC---GFVQYANRACAEQALSVLNGTQLGGQSIRLS 346
Score = 129 (50.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 44/179 (24%), Positives = 74/179 (41%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R ++IG++ +D + L + G A+VI +K G S + F+ A ++
Sbjct: 80 RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQ 139
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAKTVTSEMLKK 200
NG + E +++ + L A + + P + V+VG+LA VT ML +
Sbjct: 140 TYNGAPMPSSE--------QAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTE 191
Query: 201 CFSEK-GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F V AKV+ T +S G+GFV F +N + +R A
Sbjct: 192 TFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPA 250
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 149 (57.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 44/190 (23%), Positives = 82/190 (43%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFV-------MMKTVED 135
++++G I + + L + +GAV +A V +K TG+ R F FV ++K + D
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 136 ANAVIEK-------LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGN 188
+ ++ K + E+ + + E+ + Q++ L + + K++VG
Sbjct: 67 THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGG 126
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLL 248
L+ T E K F G+ V+ T++ GFGFVT+ N L
Sbjct: 127 LSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS-NFHEL 185
Query: 249 EGQRIRVNKA 258
+R+ V +A
Sbjct: 186 SDKRVEVKRA 195
Score = 112 (44.5 bits), Expect = 0.00048, P = 0.00048
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
YK++VG +AK + E LK+ FS G VL A V + T K GFGFV F
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 150 (57.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 51/167 (30%), Positives = 78/167 (46%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A +++IG IPRN++ +L I +++G + + VI DKYTG + AF+ E A I
Sbjct: 6 AIKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESA---I 62
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+ + +N +P +QV + DS K++VG L K + E ++K
Sbjct: 63 KAQSALHYSSGYSGMN---RP-IQV-----KPADSEGRGEDRKLFVGMLGKQQSDEDVRK 113
Query: 201 CFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFXXXXXXXXXXXXLNNS 246
F G + VLR P GTSK+ G FV F L+ S
Sbjct: 114 IFEPFGGIDECTVLRGPDGTSKA-GCAFVKFQSHSEAQSAINSLHGS 159
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 148 (57.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 52/193 (26%), Positives = 91/193 (47%)
Query: 38 PKLSYSLHNLKTASIEDSTTRLFAVAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDE 97
P+ S SL L ++ED+T + AEE A + +++IG + + +
Sbjct: 23 PRGSPSLTALSRPAMEDAT-EMSGGAEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKD 81
Query: 98 LTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157
LT+ + G V + D TGRSR F FV+ K DA A +EK+ E+K +
Sbjct: 82 LTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFK---DA-ASVEKV-------LELKEHK 130
Query: 158 TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVP 217
+ L+ +A+ + P KV+VG L+ + E +K+ F G++ + ++
Sbjct: 131 LDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDT 186
Query: 218 GTSKSSGFGFVTF 230
T++ GF F+T+
Sbjct: 187 KTNERRGFCFITY 199
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 149 (57.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 45/180 (25%), Positives = 83/180 (46%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ ++IG++ + +D + + + + G A+VI +K TG+S + F+ + A V++
Sbjct: 60 KSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF-VDSP-YKVYVGNLAKTVTSEMLK 199
NG + TE+ +++ + A + F + P + ++VG+LA VT ML
Sbjct: 120 TYNGAPMPS-------TEQTF-RLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLS 171
Query: 200 KCFSEK-GQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
F G V AKV+ T +S G+GFV F +N + +R+ A
Sbjct: 172 DTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA 231
Score = 148 (57.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 44/179 (24%), Positives = 86/179 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+++G++ + + L+ + +G+V+ A+V+ D+ TGRS+ + FV + + +
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 143 LNGTEIGGREIKVN-ITEKPLVQVDLSLLQ-AEDSNFVDS-PYK--VYVGNLAKTVTSEM 197
+NG R +++ K + + ++ Q + +N D+ P ++VG L VT +
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVN 256
LK F + G++L K+ PG GFV + LN + L GQ IR++
Sbjct: 276 LKSIFGQFGELLHVKI--PPGKR----CGFVQYANKASAEHALSVLNGTQLGGQSIRLS 328
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 130 (50.8 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXX 238
D Y+ +VG L + L+ FS+ G V+ +K++ T +S GFGFVTF
Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62
Query: 239 XXXXLNNSLLEGQRIRVNKA 258
+N L+G+ I VN+A
Sbjct: 63 AIEAMNGQDLDGRNITVNEA 82
Score = 122 (48.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R ++G + D+ L ++G V +++I D+ TGRSR F FV + E IE
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 143 LNGTEIGGREIKVN 156
+NG ++ GR I VN
Sbjct: 67 MNGQDLDGRNITVN 80
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 147 (56.8 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 49/176 (27%), Positives = 80/176 (45%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G + +V D++ G SR F FV +T E A I +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEH-G-SRGFGFVHFETHEAAQQAINTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + +L E +N +YV NL V + L+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTN-------IYVKNLPVDVDEQGLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
S+ G++LS KV+R + S FGFV F +N + G+ + +A
Sbjct: 212 SQFGKMLSVKVMR-DNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA 266
Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 40/141 (28%), Positives = 67/141 (47%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
EF +Y+ N+P ++D L + + G + +V+ D +G SR F FV + E+A
Sbjct: 189 EFTN-IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQK 246
Query: 139 VIEKLNGTEIGGREIKVNITEKPLV-QVDLSLL---QAEDSNFVDSPYKVYVGNLAKTVT 194
+ +NG E+ GR + +K + Q +L +D +YV NL ++
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSID 306
Query: 195 SEMLKKCFSEKGQVLSAKVLR 215
+ L+K FS G + SAK R
Sbjct: 307 DDKLRKEFSPYGVITSAKKRR 327
Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
Identities = 39/172 (22%), Positives = 75/172 (43%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + G+ I++ +++ D L ++ N +++ NL ++ ++ L FS
Sbjct: 73 NFEMLKGQPIRIMWSQR-----DPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
G +LS KV S GFGFV F +N LL +++ V
Sbjct: 121 TFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 148 (57.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 44/148 (29%), Positives = 72/148 (48%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G++ NI D L I + G +E +++ D TGRS+ + F+ E A +E+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 143 LNGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG-NLAKTVTSEMLKK 200
LNG E+ GR +KV ++TE+ D S S+F+DS G +L T +++ +
Sbjct: 154 LNGFELAGRPMKVGHVTER----TDAS----SASSFLDSDELERTGIDLGTTGRLQLMAR 205
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
G + + S S FG V
Sbjct: 206 LAEGTGLQIPPAAQQALQMSGSLAFGAV 233
Score = 131 (51.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 43/161 (26%), Positives = 71/161 (44%)
Query: 97 ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156
+L + G V +I D+ + RS+ A+V V I L G + G I V
Sbjct: 11 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LTGQRVLGVPIIVQ 69
Query: 157 IT--EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVL 214
+ EK + LQ + P ++YVG+L +T +ML+ F G++ S +++
Sbjct: 70 ASQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 125
Query: 215 RVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
T +S G+GF+TF LN L G+ ++V
Sbjct: 126 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 166
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 138 (53.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 46/174 (26%), Positives = 77/174 (44%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + L + G + + DK T RS +A+V + DA +E +
Sbjct: 4 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 63
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR +++ +++ D SL ++ N V++ NL KT+ ++ L FS
Sbjct: 64 NFDVINGRPVRIMWSQR-----DPSLRKSGVGN-------VFIKNLGKTIDNKALYNIFS 111
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNK 257
G +LS KV K G+GFV F LN L ++I V +
Sbjct: 112 AFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDALNGMFLNYRKIFVGR 163
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 151 (58.2 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 48/177 (27%), Positives = 79/177 (44%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR + N+P + DEL ++ ++ AE+ G+S+ A++ KT DA
Sbjct: 392 ARTLLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTF 446
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E+ GTEI GR I + T + D ++S + + + NL+ + T E L++
Sbjct: 447 EEKQGTEIDGRSISLYYTGEKGQNQDYR--GGKNSTWSGESKTLVLSNLSYSATEETLQE 504
Query: 201 CFSEKGQVLSAKVLRVPGTS--KSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
F EK A ++VP KS G+ F+ F N +EG+ IR+
Sbjct: 505 VF-EK-----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 555
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 44/170 (25%), Positives = 73/170 (42%)
Query: 92 NIDNDELTKIVQEHGAVEKAEVIY--DKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149
N+ + +QE EKA I G+S+ +AF+ + EDA + N EI
Sbjct: 492 NLSYSATEETLQE--VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 549
Query: 150 GREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKCFSEKGQV 208
GR I++ + + P N P K ++V L++ T E LK+ F G V
Sbjct: 550 GRAIRLEL-QGP----------RGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 596
Query: 209 LSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
A+++ T S GFGFV F + + ++G ++ ++ A
Sbjct: 597 -RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 645
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 151 (58.2 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 48/177 (27%), Positives = 79/177 (44%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR + N+P + DEL ++ ++ AE+ G+S+ A++ KT DA
Sbjct: 393 ARTLLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTF 447
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E+ GTEI GR I + T + D ++S + + + NL+ + T E L++
Sbjct: 448 EEKQGTEIDGRSISLYYTGEKGQNQDYR--GGKNSTWSGESKTLVLSNLSYSATEETLQE 505
Query: 201 CFSEKGQVLSAKVLRVPGTS--KSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
F EK A ++VP KS G+ F+ F N +EG+ IR+
Sbjct: 506 VF-EK-----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 556
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 44/170 (25%), Positives = 73/170 (42%)
Query: 92 NIDNDELTKIVQEHGAVEKAEVIY--DKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149
N+ + +QE EKA I G+S+ +AF+ + EDA + N EI
Sbjct: 493 NLSYSATEETLQE--VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 550
Query: 150 GREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKCFSEKGQV 208
GR I++ + + P N P K ++V L++ T E LK+ F G V
Sbjct: 551 GRAIRLEL-QGP----------RGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 597
Query: 209 LSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
A+++ T S GFGFV F + + ++G ++ ++ A
Sbjct: 598 -RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 646
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 151 (58.2 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 48/177 (27%), Positives = 79/177 (44%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR + N+P + DEL ++ ++ AE+ G+S+ A++ KT DA
Sbjct: 394 ARTLLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTF 448
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E+ GTEI GR I + T + D ++S + + + NL+ + T E L++
Sbjct: 449 EEKQGTEIDGRSISLYYTGEKGQNQDYR--GGKNSTWSGESKTLVLSNLSYSATEETLQE 506
Query: 201 CFSEKGQVLSAKVLRVPGTS--KSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
F EK A ++VP KS G+ F+ F N +EG+ IR+
Sbjct: 507 VF-EK-----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 557
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 44/170 (25%), Positives = 73/170 (42%)
Query: 92 NIDNDELTKIVQEHGAVEKAEVIY--DKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149
N+ + +QE EKA I G+S+ +AF+ + EDA + N EI
Sbjct: 494 NLSYSATEETLQE--VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 551
Query: 150 GREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKCFSEKGQV 208
GR I++ + + P N P K ++V L++ T E LK+ F G V
Sbjct: 552 GRAIRLEL-QGP----------RGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 598
Query: 209 LSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 258
A+++ T S GFGFV F + + ++G ++ ++ A
Sbjct: 599 -RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 647
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 148 (57.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 44/148 (29%), Positives = 72/148 (48%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G++ NI D L I + G +E +++ D TGRS+ + F+ E A +E+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 143 LNGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG-NLAKTVTSEMLKK 200
LNG E+ GR +KV ++TE+ D S S+F+DS G +L T +++ +
Sbjct: 311 LNGFELAGRPMKVGHVTER----TDAS----SASSFLDSDELERTGIDLGTTGRLQLMAR 362
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
G + + S S FG V
Sbjct: 363 LAEGTGLQIPPAAQQALQMSGSLAFGAV 390
Score = 145 (56.1 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 50/183 (27%), Positives = 80/183 (43%)
Query: 76 TPSEF-ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
TP E AR V+ + I +L + G V +I D+ + RS+ A+V V
Sbjct: 146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVS 205
Query: 135 DANAVIEKLNGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
I L G + G I V + EK + LQ + P ++YVG+L
Sbjct: 206 SVPLAIG-LTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAG----PMRLYVGSLHFN 260
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQR 252
+T +ML+ F G++ S +++ T +S G+GF+TF LN L G+
Sbjct: 261 ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320
Query: 253 IRV 255
++V
Sbjct: 321 MKV 323
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 149 (57.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GNI +ID ++L + + G +E ++ D+ TGRSR + FV + A +EK
Sbjct: 274 RLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEK 332
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN 176
+NG ++GGR I+V + + Q++ +N
Sbjct: 333 MNGYDLGGRAIRVGLGNDKFTPENTQRTQSQSAN 366
Score = 148 (57.2 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 45/175 (25%), Positives = 83/175 (47%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +++ + + EL ++ G V++A+++ D+ +GRS+ +V K E + A
Sbjct: 174 RTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKD-ESSVAPAI 232
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY-KVYVGNLAKTVTSEMLKK 200
+L G ++ G I +TE + + +A N +P+ ++YVGN+ ++ L+
Sbjct: 233 QLTGQKLLGIPIIAQLTEAEKNRQARNS-EASSGNKHSAPFHRLYVGNIHFSIDENDLQS 291
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRV 255
F G+ L L+ T +S G+GFV F +N L G+ IRV
Sbjct: 292 VFEPFGE-LEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRV 345
WARNING: HSPs involving 734 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 258 229 0.00082 113 3 11 22 0.41 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 984
No. of states in DFA: 548 (58 KB)
Total size of DFA: 137 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.22u 0.16s 19.38t Elapsed: 00:00:01
Total cpu time: 19.27u 0.16s 19.43t Elapsed: 00:00:01
Start: Thu May 9 14:10:42 2013 End: Thu May 9 14:10:43 2013
WARNINGS ISSUED: 2