BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025070
(258 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 202/261 (77%), Gaps = 9/261 (3%)
Query: 1 MASISSSSSLILSQQNLIFSKTHF--TFQSRQPILQI-RFPKLSYSLHNLKTASIEDSTT 57
MA+ISS ++ + + L S+ +FQ +P FPK ++ LH + +
Sbjct: 1 MATISSLTTPLPTSTKLALSRNQSKPSFQILKPANPFNHFPKFTH-LHKILNT---KAPQ 56
Query: 58 RLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK 117
RLFAVAEETA +++ VD SE ARR+Y+GNIPR + N+ELTKIV+EHGAVEKAEV+YDK
Sbjct: 57 RLFAVAEETAPAAA--VDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDK 114
Query: 118 YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF 177
Y+GRSRRFAFV MKT EDANA IEKLNGTEIGGREIKVNITEKPL +DL LQ+++S F
Sbjct: 115 YSGRSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPLQSLDLPSLQSDESQF 174
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
VDSPYKVYVGNLAKTV ++ LK FS+KG VLSAKV RVPGTSKSSGFGFVTFSSEED E
Sbjct: 175 VDSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVE 234
Query: 238 AAISSLNNSLLEGQRIRVNKA 258
AISS NNSLLEGQ IRVNKA
Sbjct: 235 VAISSFNNSLLEGQPIRVNKA 255
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 172/261 (65%), Positives = 202/261 (77%), Gaps = 9/261 (3%)
Query: 1 MASISSSSSLILSQQNLIFSKTHF--TFQSRQPILQI-RFPKLSYSLHNLKTASIEDSTT 57
MA+ISS ++ + + L S+ +FQ +P FPK ++ LH + +
Sbjct: 1 MATISSLTTPLPTSTKLALSRNQSKPSFQILKPANPFNHFPKFTH-LHKILNT---KAPQ 56
Query: 58 RLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK 117
RLFAVAEETA +++ VD SE ARR+Y+GNIPR + N+ELTKIV+EHGAVEKAEV+YDK
Sbjct: 57 RLFAVAEETAPAAA--VDPSSEAARRLYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDK 114
Query: 118 YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF 177
Y+GRSRRFAFV MKT EDANA IEKLNGTEIGGREIKVNITEKPL +DL LQ++++ F
Sbjct: 115 YSGRSRRFAFVTMKTAEDANAAIEKLNGTEIGGREIKVNITEKPLQSLDLPSLQSDETQF 174
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
VDSPYKVYVGNLAKTV ++ LK FS+KG VLSAKV RVPGTSKSSGFGFVTFSSEED E
Sbjct: 175 VDSPYKVYVGNLAKTVATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVE 234
Query: 238 AAISSLNNSLLEGQRIRVNKA 258
AISS NNSLLEGQ IRVNKA
Sbjct: 235 VAISSFNNSLLEGQPIRVNKA 255
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 313 bits (802), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 151/181 (83%), Positives = 166/181 (91%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE A+R+YIGNIPR +DNDELTKIV+EHGAVEKAEV+YDKY+GRSRRFAFV M+TVEDAN
Sbjct: 76 SEAAKRLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDAN 135
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
AVIEKLNGT+IGGREIKVNITEKPL DLS LQ E+S FVDSP+KVYVGNLAKTVTSE+
Sbjct: 136 AVIEKLNGTQIGGREIKVNITEKPLASGDLSFLQLEESQFVDSPHKVYVGNLAKTVTSEI 195
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
LK FSEKG+VLSAKV RVPGTSKSSG+GFV+FS EED EAAISS NNSLLEGQ+IRVNK
Sbjct: 196 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAISSFNNSLLEGQKIRVNK 255
Query: 258 A 258
A
Sbjct: 256 A 256
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/261 (64%), Positives = 196/261 (75%), Gaps = 13/261 (4%)
Query: 1 MASISSSSSLILSQQNLIFSKTHFTFQSRQPILQIRFPKLSYSLHNLKTAS--IEDSTTR 58
MASISS IL+ NLI S T + Q P + H L S TR
Sbjct: 1 MASISS----ILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTR 56
Query: 59 LFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKY 118
LFAVAE +SS + R++YIGNIPRN++N+ELT+IVQEHGAVEKAEV+YDKY
Sbjct: 57 LFAVAEVATQGASSVAE------RKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKY 110
Query: 119 TGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ-VDLSLLQAEDSNF 177
+GRSRRFAFV MKTVEDANA IEKLN TE+GGR+IKVNITEKP+V VD+S LQAE+S F
Sbjct: 111 SGRSRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQF 170
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+DSPYKVYVGN++ TV++E LK FSEKG+VLSAKV RVPGTSKSSG+GFVTFSSEE+ +
Sbjct: 171 IDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVD 230
Query: 238 AAISSLNNSLLEGQRIRVNKA 258
AAISS NN+LLEGQ IRVNKA
Sbjct: 231 AAISSFNNALLEGQPIRVNKA 251
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 146/178 (82%), Positives = 161/178 (90%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
ARR+Y+GNIPR + N+EL KIVQEHGAVEKAEV+YDKY+GRSRRFAFV MKTVEDA AVI
Sbjct: 69 ARRLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVI 128
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
EKLNGTEIGGRE+KVN+TEKPL DL LLQAE+S F+DSP+KVYVGNLAKTVT++ LK
Sbjct: 129 EKLNGTEIGGREVKVNVTEKPLSTPDLPLLQAEESEFIDSPHKVYVGNLAKTVTTDTLKN 188
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FSEKG+VLSAKV RVPGTSKSSG+GFVTFSSEED EAAISS NNSLLEGQ IRVNKA
Sbjct: 189 FFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQTIRVNKA 246
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/177 (81%), Positives = 160/177 (90%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
RR+Y+GNIPR + NDEL KIVQEHGAVEKAEV+YDKY+GRSRRFAFV MKTVEDA AVIE
Sbjct: 70 RRLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIE 129
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
KLNGTE+GGREIKVN+TEKPL +DL LLQAE+S F+DSP+KVYVGNLAKTVT++ LK
Sbjct: 130 KLNGTELGGREIKVNVTEKPLSTLDLPLLQAEESEFIDSPHKVYVGNLAKTVTTDTLKNF 189
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FSEKG+VLSAKV RVPGTSKSSG+GFVTF SEED EAAISS NNSLLEGQ IRVNKA
Sbjct: 190 FSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNNSLLEGQTIRVNKA 246
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 163/262 (62%), Positives = 198/262 (75%), Gaps = 19/262 (7%)
Query: 1 MASISSSSSLILSQQNLIFSKTHFTFQSR---QPILQIRFPKLSYSLHNLKTASIEDSTT 57
MA+ISS + SQ L T S+ QP+ F L+++ +I+
Sbjct: 1 MAAISS----LFSQTLLHHPTKTLTLHSKPSIQPLKPFHF------LNSVTFKAIKPK-- 48
Query: 58 RLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK 117
R AV+ TA + ++ D ARR+Y+GNIPR +D+ EL +IV+EHGAVEKAEV+YDK
Sbjct: 49 RPIAVSAVTAEAPVATSDVA---ARRLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDK 105
Query: 118 YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF 177
Y+GRSRRFAFV MKTVEDANA IEKLNGTEIGGREIKVNITEKPL+ +D+SLLQAE+S F
Sbjct: 106 YSGRSRRFAFVTMKTVEDANAAIEKLNGTEIGGREIKVNITEKPLLTLDMSLLQAEESQF 165
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEK-GQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
+DSP+KVYVGNLA+TVT++ L + FSEK G+VLSAKV RVPGTSKSSGFGFV+FSSEED
Sbjct: 166 IDSPHKVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDV 225
Query: 237 EAAISSLNNSLLEGQRIRVNKA 258
EAAISS NN+ L+GQRIRVNKA
Sbjct: 226 EAAISSCNNAFLDGQRIRVNKA 247
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/205 (71%), Positives = 169/205 (82%), Gaps = 1/205 (0%)
Query: 55 STTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI 114
S TR A +++D SE ARRVYIGNIPR + N++LTK+V+EHGAVEK +V+
Sbjct: 49 SRTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVM 108
Query: 115 YDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ-VDLSLLQAE 173
YDKY+GRSRRF F MK+VEDANAV+EKLNG + GREIKVNITEKP+ DLS+LQ+E
Sbjct: 109 YDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSE 168
Query: 174 DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
DS FVDSPYKVYVGNLAKTVT EML+ FSEKG+V+SAKV RVPGTSKS+GFGFVTFSSE
Sbjct: 169 DSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSE 228
Query: 234 EDAEAAISSLNNSLLEGQRIRVNKA 258
ED EAAI +LNNSLLEGQ+IRVNKA
Sbjct: 229 EDVEAAIVALNNSLLEGQKIRVNKA 253
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/205 (70%), Positives = 169/205 (82%), Gaps = 1/205 (0%)
Query: 55 STTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI 114
S TR A +++D SE ARRVYIGNIPR + N++LTK+V+EHGAVEK +V+
Sbjct: 49 SRTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVSNEQLTKLVEEHGAVEKVQVM 108
Query: 115 YDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ-VDLSLLQAE 173
YDKY+GRSRRF F MK+VEDANAV+EKLNG + GREIKVNITEKP+ DLS+LQ+E
Sbjct: 109 YDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSE 168
Query: 174 DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
DS FVDSPYKVYVGNLAKTVT EML+ FSEKG+V+SAKV RVPGTSKS+GFGFVTFSSE
Sbjct: 169 DSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSE 228
Query: 234 EDAEAAISSLNNSLLEGQRIRVNKA 258
ED EAA+ +LNNSLLEGQ+IRVNKA
Sbjct: 229 EDVEAAVVALNNSLLEGQKIRVNKA 253
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 146/191 (76%), Positives = 162/191 (84%), Gaps = 3/191 (1%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
SS ++VD+P+ R++Y+GNIPR + NDEL KIVQEHGAVEKAEV+YDKY+ RSRRFAF
Sbjct: 48 SSEQATVDSPA--LRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAF 105
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V MKTVEDANA EKLNGTEIGGREIKVNITEKPL L +QA +S FVDSPYKVYVG
Sbjct: 106 VTMKTVEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLP-VQAGESTFVDSPYKVYVG 164
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NLAK VTS+ LKK FSEKG LSAKV R PGTSKSSGFGFVTFSS+ED EAAISS NN+L
Sbjct: 165 NLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNAL 224
Query: 248 LEGQRIRVNKA 258
LEGQ+IRVNKA
Sbjct: 225 LEGQKIRVNKA 235
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/191 (75%), Positives = 161/191 (84%), Gaps = 3/191 (1%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
SS ++VD+P+ R++Y+GNIPR + NDEL KIVQEHGAVEKAEV+YDKY+ RSRRFAF
Sbjct: 48 SSEQATVDSPA--LRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAF 105
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V MKTVEDANA EKLNGTEIGGREIKVNITEKPL L +QA +S FVDSPYKVYVG
Sbjct: 106 VTMKTVEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLP-VQAGESTFVDSPYKVYVG 164
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NLAK VTS+ LKK FSEKG LSAKV R PGTSKSSGFGFVTFSS+ED EAAISS NN+L
Sbjct: 165 NLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNAL 224
Query: 248 LEGQRIRVNKA 258
LEGQ+IRVNK
Sbjct: 225 LEGQKIRVNKG 235
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 161/181 (88%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
E ARR+Y+GNIPRN++NDEL IV+EHGA+E AEV+YDKY+GRSRRF FV MKTVEDAN
Sbjct: 80 GEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDAN 139
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
AVIEKLN TEIGGR+IKVNITEKPL +D++ QAEDS FV+SPYKVY+GNLAKTVT+E+
Sbjct: 140 AVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNEL 199
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
LK FSEKG+VL AKV R PGTSKS+GFGFV+FSSEE+ EAAI +LNNS+LEGQ+IRVNK
Sbjct: 200 LKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259
Query: 258 A 258
A
Sbjct: 260 A 260
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/234 (63%), Positives = 171/234 (73%), Gaps = 4/234 (1%)
Query: 22 THFTFQSRQ-PILQIRFPKLS-YSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSE 79
T F+FQS LQ R S H+L S TR A +++D SE
Sbjct: 14 TIFSFQSESFTPLQTRANVFSSKPFHSLAGTFSRSSRTRFIPYAVTETEEKPAALDPSSE 73
Query: 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV 139
ARRVYIGNIPR + N++LTK+V+EHGAVEK +V+YDKY+GRSRRF F MK+VEDANAV
Sbjct: 74 AARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAV 133
Query: 140 IEKLNGTEIGGREIKVNITEKPLV--QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+EKLNG + GREIKVNITEKP+ DLSLLQ+EDS FVDSPYKVYVGNLAKTVT EM
Sbjct: 134 VEKLNGNTVEGREIKVNITEKPIASSSPDLSLLQSEDSAFVDSPYKVYVGNLAKTVTKEM 193
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
L+ FSEKG+V+SAKV RVPGTSKS+GFGFVTFSSEED EAAI +LNNS Q
Sbjct: 194 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAILALNNSAKPSQ 247
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
+VY+GN+ +TVT+E L K E G V +V+ + +S FGF T S EDA A +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 243 LNNSLLEGQRIRVN 256
LN + +EG+ I+VN
Sbjct: 137 LNGNTVEGREIKVN 150
>gi|4678944|emb|CAB41335.1| putative protein [Arabidopsis thaliana]
Length = 546
Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 142/208 (68%), Positives = 164/208 (78%), Gaps = 10/208 (4%)
Query: 55 STTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI 114
S TR A +++D SE ARRVYIGNIPR + N++LTK+V+EHGAVEK V+
Sbjct: 49 SRTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEK--VM 106
Query: 115 YDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTE-------IGGREIKVNITEKPLVQ-VD 166
YDKY+GRSRRF F MK+VEDANAV+EKLNG + GREIKVNITEKP+ D
Sbjct: 107 YDKYSGRSRRFGFATMKSVEDANAVVEKLNGNSLFLVSQTVEGREIKVNITEKPIASSPD 166
Query: 167 LSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFG 226
LS+LQ+EDS FVDSPYKVYVGNLAKTVT EML+ FSEKG+V+SAKV RVPGTSKS+GFG
Sbjct: 167 LSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFG 226
Query: 227 FVTFSSEEDAEAAISSLNNSLLEGQRIR 254
FVTFSSEED EAAI +LNNSLLEGQ+IR
Sbjct: 227 FVTFSSEEDVEAAIVALNNSLLEGQKIR 254
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/178 (68%), Positives = 140/178 (78%), Gaps = 1/178 (0%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E RR+Y+GNIPR N+EL KI E G VEKAEV+YDKYT RSRRFAFV M TVEDA A
Sbjct: 70 EIERRLYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQA 129
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
IEK+NGTEIGGR IKVNITEKPL L+ L E++ F+DSPYKVYVGNLAK VT+E L
Sbjct: 130 AIEKMNGTEIGGRVIKVNITEKPLDVSGLNRL-TEEAEFIDSPYKVYVGNLAKAVTTETL 188
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
KK F+EKG VL AKV R+P T KS G+GFV+FSSE D EAAIS+ NN +LEG+ +RVN
Sbjct: 189 KKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISAFNNVVLEGKPMRVN 246
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
+D+P +VY+GN+ + + + L K E G V A+V TG+S + FV +
Sbjct: 168 IDSPY----KVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSE 223
Query: 134 EDANAVIEKLNGTEIGGREIKVNIT 158
D A I N + G+ ++VN+T
Sbjct: 224 ADVEAAISAFNNVVLEGKPMRVNVT 248
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/186 (63%), Positives = 147/186 (79%), Gaps = 2/186 (1%)
Query: 74 VDTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT 132
++ P E A R++Y+GNIPR + NDEL + +HG VE+AEV++DKYTGRSRRF FV M T
Sbjct: 61 LEAPEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMST 120
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
E+ANA IE LN TE+GGR+IKVN+TE L +D S + E FVDS YKVYVGNLAK+
Sbjct: 121 PEEANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPV-FVDSQYKVYVGNLAKS 179
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
VT+EMLK FSEKG+VLSA V R+PGT+KS G+GFVTFSSEE+ +AA+S+ NN+ LEGQ
Sbjct: 180 VTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQP 239
Query: 253 IRVNKA 258
IRVNKA
Sbjct: 240 IRVNKA 245
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/191 (62%), Positives = 151/191 (79%), Gaps = 2/191 (1%)
Query: 69 SSSSSVDTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+SS+ ++ P E A R++Y+GNIPR + NDEL + +HG V +A+V+YDKY+GRSRRF F
Sbjct: 55 ASSAVLEAPEELATRKLYVGNIPRTVTNDELRAMFADHGTVLRADVMYDKYSGRSRRFGF 114
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V M +VE+ANA IE LN TE+GGR+IKVN+TE L +D S + E + FVDS YKVYVG
Sbjct: 115 VTMSSVEEANAAIESLNETEVGGRKIKVNVTESFLPNIDPSAPEPEPA-FVDSQYKVYVG 173
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NLAKTVT+E+LK FSEKG+VLSA V R+PGT KS G+GFVTFSSEE+ EAA+S+ NN+
Sbjct: 174 NLAKTVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTE 233
Query: 248 LEGQRIRVNKA 258
LEGQ IRVN+A
Sbjct: 234 LEGQPIRVNRA 244
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 118/192 (61%), Positives = 150/192 (78%), Gaps = 2/192 (1%)
Query: 68 SSSSSSVDTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
S+SS+ ++ P A R++Y+GN+PR + NDEL + HG VE+AEV+YDKYT RSRRF
Sbjct: 52 SASSAVLEAPEVVAARKLYVGNVPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFG 111
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV M TVE+ANA +E LNGTE+GGR+IKVN+TE L +D S ++E FVDS YKVYV
Sbjct: 112 FVTMSTVEEANAAVEALNGTEVGGRKIKVNVTESFLPNIDRSAPESEPV-FVDSQYKVYV 170
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
GNLAK VT+E+LK FSEKG++LSA V +PGTSKS G+GFVTFSSEE+ EAA+++ NN+
Sbjct: 171 GNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNA 230
Query: 247 LLEGQRIRVNKA 258
LEGQ IRVN+A
Sbjct: 231 ELEGQPIRVNRA 242
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/191 (61%), Positives = 148/191 (77%), Gaps = 2/191 (1%)
Query: 69 SSSSSVDTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+SS+ ++ P E A R++Y+GNIPR + NDEL+ + HG V +AEV+YDKY+GRSRRF F
Sbjct: 55 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 114
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V M T E+ A IE LN TE+GGR+IKVN+TE L +D S ++E S FVDS YKVYVG
Sbjct: 115 VTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPS-FVDSQYKVYVG 173
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NLAK VT+E+LK FSEKG+VLSA V R+PGT KS G+GFVTFSSEE+ EAA+S+ NN+
Sbjct: 174 NLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTE 233
Query: 248 LEGQRIRVNKA 258
LEGQ IRVN+A
Sbjct: 234 LEGQTIRVNRA 244
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/192 (61%), Positives = 148/192 (77%), Gaps = 2/192 (1%)
Query: 68 SSSSSSVDTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
S+SS+ ++ P A R++Y+GNIPR + NDEL + HG VE+AEV+YDKYT RSRRF
Sbjct: 54 SASSAVLEAPEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFG 113
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV M T E+ANA +E LNGTE+G R+IKVN+TE L +D S + E + FVDS YKVYV
Sbjct: 114 FVTMSTAEEANAAVEALNGTEVGDRKIKVNVTESFLPNIDRSAPEPE-ALFVDSQYKVYV 172
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
GNLAKTVT+E+LK FSEKG +LSA V +PGTSKS G+GFVTFSSEE+ EAA+++ NN+
Sbjct: 173 GNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNA 232
Query: 247 LLEGQRIRVNKA 258
LEGQ IRVN+A
Sbjct: 233 ELEGQLIRVNRA 244
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/181 (60%), Positives = 139/181 (76%), Gaps = 2/181 (1%)
Query: 68 SSSSSSVDTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
S+SS+ ++ P A R++Y+GNIPR + NDEL + HG VE+AEV+YDKYT RSRRF
Sbjct: 54 SASSAVLEAPEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFG 113
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV M T E+ANA +E LNGTE+G R+IKVN+TE L +D S + E + FVDS YKVYV
Sbjct: 114 FVTMSTAEEANAAVEALNGTEVGDRKIKVNVTESFLPNIDRSAPEPE-ALFVDSQYKVYV 172
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
GNLAKTVT+E+LK FSEKG +LSA V +PGTSKS G+GFVTFSSEE+ EAA+++ NN+
Sbjct: 173 GNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNA 232
Query: 247 L 247
+
Sbjct: 233 V 233
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 51/74 (68%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K+YVGN+ +TVT++ L+ F+ G V A+V+ T++S FGFVT S+ E+A AA+ +
Sbjct: 70 KLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEA 129
Query: 243 LNNSLLEGQRIRVN 256
LN + + ++I+VN
Sbjct: 130 LNGTEVGDRKIKVN 143
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/181 (60%), Positives = 139/181 (76%), Gaps = 2/181 (1%)
Query: 68 SSSSSSVDTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
S+SS+ ++ P A R++Y+GNIPR + NDEL + HG VE+AEV+YDKYT RSRRF
Sbjct: 54 SASSAVLEAPEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFG 113
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV M T E+ANA +E LNGTE+G R+IKVN+TE L +D S + E + FVDS YKVYV
Sbjct: 114 FVTMSTAEEANAAVEALNGTEVGDRKIKVNVTESFLPNIDRSAPEPE-ALFVDSQYKVYV 172
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
GNLAKTVT+E+LK FSEKG +LSA V +PGTSKS G+GFVTFSSEE+ EAA+++ NN+
Sbjct: 173 GNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVATFNNA 232
Query: 247 L 247
+
Sbjct: 233 V 233
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 51/74 (68%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K+YVGN+ +TVT++ L+ F+ G V A+V+ T++S FGFVT S+ E+A AA+ +
Sbjct: 70 KLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEA 129
Query: 243 LNNSLLEGQRIRVN 256
LN + + ++I+VN
Sbjct: 130 LNGTEVGDRKIKVN 143
>gi|125563035|gb|EAZ08415.1| hypothetical protein OsI_30679 [Oryza sativa Indica Group]
Length = 226
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/186 (54%), Positives = 128/186 (68%), Gaps = 21/186 (11%)
Query: 74 VDTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT 132
++ P E A R++Y+GNIPR + NDEL + +HG VE+AEV++DKYTGRSRRF FV M T
Sbjct: 61 LEAPEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMST 120
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
E+ANA IE LN TE+GGR+IKVN+TE L +D S + E FVDS Y+ +
Sbjct: 121 PEEANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPV-FVDSQYRFTL------ 173
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
G+VLSA V R+PGT+KS G+GFVTFSSEE+ EAA+S+ NN+ LEGQ
Sbjct: 174 -------------GEVLSATVSRIPGTAKSKGYGFVTFSSEEEVEAAVSTFNNAELEGQP 220
Query: 253 IRVNKA 258
IRVNKA
Sbjct: 221 IRVNKA 226
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 124/178 (69%), Gaps = 2/178 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+P +ID++ L K+ E G VE EVIYD+ +GRSR FAFV M TVE+A A I+K
Sbjct: 160 KLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKK 219
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAED--SNFVDSPYKVYVGNLAKTVTSEMLKK 200
NG EI GR ++VN E P +Q S ++ FVDSP+KVYVGNLA +VTSE L++
Sbjct: 220 FNGFEIDGRSLRVNFPEVPRLQNGRSPARSPSNFGGFVDSPHKVYVGNLAWSVTSETLRE 279
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ KG VL AKV++ T +S GFGFV+FSSE + EAA+S ++ +EG+ IRVN A
Sbjct: 280 ALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNVA 337
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
VD+P +VY+GN+ ++ ++ L + + G V A+VI D+ TGRSR F FV +
Sbjct: 257 VDSP----HKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSE 312
Query: 134 EDANAVIEKLNGTEIGGREIKVNIT 158
+ A + +++G E+ GR I+VN+
Sbjct: 313 AEVEAAVSEMDGLEVEGRSIRVNVA 337
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 124/178 (69%), Gaps = 2/178 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+P +ID++ L K+ E G VE EVIYD+ +GRSR FAFV M TVE+A A I+K
Sbjct: 168 KLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKK 227
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAED--SNFVDSPYKVYVGNLAKTVTSEMLKK 200
NG EI GR ++VN E P +Q S ++ FVDSP+KVYVGNLA +VTSE L++
Sbjct: 228 FNGFEIDGRSLRVNFPEVPRLQNGRSPARSPSNFGGFVDSPHKVYVGNLAWSVTSETLRE 287
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ KG VL AKV++ T +S GFGFV+FSSE + EAA+S ++ +EG+ IRVN A
Sbjct: 288 ALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNVA 345
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
VD+P +VY+GN+ ++ ++ L + + G V A+VI D+ TGRSR F FV +
Sbjct: 265 VDSP----HKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSE 320
Query: 134 EDANAVIEKLNGTEIGGREIKVNIT 158
+ A + +++G E+ GR I+VN+
Sbjct: 321 AEVEAAVSEMDGLEVEGRSIRVNVA 345
>gi|223942613|gb|ACN25390.1| unknown [Zea mays]
Length = 164
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 114/143 (79%), Gaps = 1/143 (0%)
Query: 105 HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ 164
HG VE+AEV+YDKYT RSRRF FV M T E+ANA +E LNGTE+G R+IKVN+TE L
Sbjct: 5 HGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEALNGTEVGDRKIKVNVTESFLPN 64
Query: 165 VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG 224
+D S + E + FVDS YKVYVGNLAKTVT+E+LK FSEKG +LSA V +PGTSKS G
Sbjct: 65 IDRSAPEPE-ALFVDSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKG 123
Query: 225 FGFVTFSSEEDAEAAISSLNNSL 247
+GFVTFSSEE+ EAA+++ NN++
Sbjct: 124 YGFVTFSSEEEVEAAVATFNNAV 146
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D P+ +VY+GN+P + D+ EL I+QEHG+VE EVIYD+ TGRSR FAF M +VE
Sbjct: 106 DIPA--GTKVYLGNLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFATMSSVE 163
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLL---QAEDSNFV--DSPYKVYVGNL 189
DANA++E L+G++ GGR ++VN+ E+ + ++L ++E N D ++VY+GNL
Sbjct: 164 DANALVENLDGSQYGGRTLRVNLREEASRSLRVNLRDKSRSEQRNQTNNDGQHRVYIGNL 223
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ V E+L + FSE G +L AK++ T +S GFGF+TFS++ +AEAA++SLN LE
Sbjct: 224 SWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNGKELE 283
Query: 250 GQRIRVNKA 258
G+ +RV+ A
Sbjct: 284 GRAMRVDLA 292
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 125/195 (64%), Gaps = 9/195 (4%)
Query: 64 EETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
E ++ S SV + ++Y GN+P N D+ +L IVQE+ + E EV+YD+ TGRSR
Sbjct: 106 EGSSQDSRPSVAASTTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRITGRSR 165
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK 183
FAFV M TV+D VI+ L+G+ GGR +KVN ++P ++ L + ++ +K
Sbjct: 166 GFAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFADRPKPKLPL---------YPETEHK 216
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
++VGNL+ TVTSEML + F G V+ A+VL T +S G+GFV +S++E+ + AISSL
Sbjct: 217 LFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISSL 276
Query: 244 NNSLLEGQRIRVNKA 258
N + LEG+ IRVN A
Sbjct: 277 NGTELEGREIRVNLA 291
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 129/202 (63%), Gaps = 14/202 (6%)
Query: 62 VAEETASSSSSSVDT-PSEFAR----RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYD 116
V EE A+ +SS D+ PS A ++Y GN+P N D+ +L IVQE+ + E EV+YD
Sbjct: 91 VQEEGAAVGASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYD 150
Query: 117 KYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN 176
+ TGRSR FAFV M TV+D VI+ L+G+ GGR +KVN ++P + + +
Sbjct: 151 RTTGRSRGFAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFADRP---------KPKQAL 201
Query: 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
+ ++ +K++VGNL+ TVTSEML + F G V+ A+VL T +S G+GFV +S+ E+
Sbjct: 202 YPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEM 261
Query: 237 EAAISSLNNSLLEGQRIRVNKA 258
+ A+SSLN +EG+ +RVN A
Sbjct: 262 DEALSSLNGMEMEGREMRVNLA 283
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 129/202 (63%), Gaps = 14/202 (6%)
Query: 62 VAEETASSSSSSVDT-PSEFAR----RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYD 116
V EE A+ +SS D+ PS A ++Y GN+P N D+ +L IVQE+ + E EV+YD
Sbjct: 91 VQEEGAAVGASSDDSGPSVAASTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYD 150
Query: 117 KYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN 176
+ TGRSR FAFV M TV+D VI+ L+G+ GGR +KVN ++P + + +
Sbjct: 151 RTTGRSRGFAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFADRP---------KPKQAL 201
Query: 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
+ ++ +K++VGNL+ TVTSEML + F G V+ A+VL T +S G+GFV +S+ E+
Sbjct: 202 YPETEHKLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEM 261
Query: 237 EAAISSLNNSLLEGQRIRVNKA 258
+ A+SSLN +EG+ +RVN A
Sbjct: 262 DEALSSLNGMEMEGREMRVNLA 283
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 119/176 (67%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P + D+ +L I+Q +G+ E EV+Y++ TGRSR FAFV M +VED NAVIE
Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G+E GGR ++VN ++KP ++ L + ++ YK++VGNL+ +VTSE L + F
Sbjct: 172 LDGSEYGGRTLRVNFSDKPKPKLPL---------YPETEYKLFVGNLSWSVTSESLNQVF 222
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G V+ A+VL T +S G+GFV +S++ + + A+ SLN LEG+ IR++ A
Sbjct: 223 QEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRISLA 278
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ ++ ++ L ++ QE+G V A V+YD TGRSR + FV T + + +E
Sbjct: 203 KLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALES 262
Query: 143 LNGTEIGGREIKVNITE 159
LNG E+ GR I++++ +
Sbjct: 263 LNGVELEGRAIRISLAQ 279
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 126/185 (68%), Gaps = 10/185 (5%)
Query: 75 DTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D+ FA ++Y GN+P ++D+ +L ++Q++G+ E EV+YD+ TG+SR FAFV M +
Sbjct: 105 DSDESFASTKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCI 164
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
ED NAVIE L+G E GR ++VN + KP +A++ + ++ +K++VGNL+ +V
Sbjct: 165 EDCNAVIENLDGKEYLGRTLRVNFSNKP---------KAKEPLYPETEHKLFVGNLSWSV 215
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
T+E+L + F E G V+ A+VL T +S G+GFV FS++E+ EAA+ +LN+ LEG+ +
Sbjct: 216 TNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVELEGRAM 275
Query: 254 RVNKA 258
RV+ A
Sbjct: 276 RVSLA 280
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ ++ N+ LT+ QE+G V A V+YD TGRSR + FV T E+ A
Sbjct: 201 ETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEA 260
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQ 164
+ LN E+ GR ++V++ E Q
Sbjct: 261 ALGALNDVELEGRAMRVSLAEGKRAQ 286
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 117/176 (66%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P N D+ +L IVQ++ E EV+YD+ TGRSR FAFV M T+ED VI+
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G+ GR ++VN +KP ++ L + ++ +K++VGNL+ TVTSEML + F
Sbjct: 206 LDGSLYSGRTMRVNFADKPKPKLPL---------YPETEHKLFVGNLSWTVTSEMLTEMF 256
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G V+ A+VL T +S G+GFV +S++E+ + A+SSLN + LEG+ IRVN A
Sbjct: 257 QKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLA 312
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 117/173 (67%), Gaps = 9/173 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P + D+ +L I+Q +G+ E EV+Y++ TGRSR FAFV M +VED NAVIE
Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G+E GGR ++VN ++KP ++ L + ++ YK++VGNL+ +VTSE L + F
Sbjct: 172 LDGSEYGGRTLRVNFSDKPKPKLPL---------YPETEYKLFVGNLSWSVTSESLNQVF 222
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
E G V+ A+VL T +S G+GFV +S++ + + A+ SLN LEG+ IRV
Sbjct: 223 QEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRV 275
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K+Y GNL + S L G +VL T +S GF FVT SS ED A I +
Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171
Query: 243 LNNSLLEGQRIRVN 256
L+ S G+ +RVN
Sbjct: 172 LDGSEYGGRTLRVN 185
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 117/176 (66%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P N D+ +L IVQ++ E EV+YD+ TGRSR FAFV M T+ED VI+
Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 207
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G+ GR ++VN +KP ++ L + ++ +K++VGNL+ TVTSEML + F
Sbjct: 208 LDGSLYSGRTMRVNFADKPKPKLPL---------YPETEHKLFVGNLSWTVTSEMLTEMF 258
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G V+ A+VL T +S G+GFV +S++E+ + A+SSLN + LEG+ IRVN A
Sbjct: 259 QKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLA 314
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 114/178 (64%), Gaps = 9/178 (5%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++Y GN+P N D+ L IVQ+H E EV+YD+ TGRSR FAFV M T+ED VI
Sbjct: 132 ATKLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVI 191
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+ L+GT GR ++VN+ +KP + L + ++ +K++VGNL+ TVT EML
Sbjct: 192 KNLDGTLYSGRTMRVNMADKPKPKEPL---------YPETEHKLFVGNLSWTVTPEMLTD 242
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + G V+ A+VL T +S G+GFV +S++E+ + AI +LN + +EG+ IRVN A
Sbjct: 243 AFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRVNLA 300
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ + + LT Q+ G V A V+YD TGRSR + FV T E+ +
Sbjct: 221 ETEHKLFVGNLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQ 280
Query: 139 VIEKLNGTEIGGREIKVNI 157
IE LNGTEI GREI+VN+
Sbjct: 281 AIETLNGTEIEGREIRVNL 299
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 113/178 (63%), Gaps = 9/178 (5%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++Y GN+P N D+ L IVQ+H E EV+YD+ TGRSR FAFV M T+ED VI
Sbjct: 249 ATKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVI 308
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+ L+GT GR ++VN+ ++P + L + ++ +K++VGNL+ TVT EML
Sbjct: 309 KNLDGTLYSGRTMRVNMADRPKPKAPL---------YPETEHKLFVGNLSWTVTPEMLTD 359
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G V+ A+VL T +S G+GFV +S++E+ + AI +LN + +EG+ IRVN A
Sbjct: 360 AFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRVNLA 417
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ + + LT Q G V A V+YD TGRSR + FV T E+ +
Sbjct: 338 ETEHKLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQ 397
Query: 139 VIEKLNGTEIGGREIKVNI 157
IE LNGTEI GREI+VN+
Sbjct: 398 AIETLNGTEIEGREIRVNL 416
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 113/178 (63%), Gaps = 9/178 (5%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++Y GN+P N D+ L IVQ+H E EV+YD+ TGRSR FAFV M T+ED VI
Sbjct: 133 ATKLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVI 192
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+ L+GT GR ++VN+ ++P + L + ++ +K++VGNL+ TVT EML
Sbjct: 193 KNLDGTLYSGRTMRVNMADRPKPKAPL---------YPETEHKLFVGNLSWTVTPEMLTD 243
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G V+ A+VL T +S G+GFV +S++E+ + AI +LN + +EG+ IRVN A
Sbjct: 244 AFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRVNLA 301
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ + + LT Q G V A V+YD TGRSR + FV T E+ +
Sbjct: 222 ETEHKLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQ 281
Query: 139 VIEKLNGTEIGGREIKVNI 157
IE LNGTEI GREI+VN+
Sbjct: 282 AIETLNGTEIEGREIRVNL 300
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 130/198 (65%), Gaps = 19/198 (9%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
AVAE+ + SS A ++Y GN+P ++D+ +L ++Q++G+ E EV+YD+ +G
Sbjct: 99 AVAEQDSDSS----------ATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSG 148
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS 180
+SR FAFV M +ED NAVIE L+G E GR ++VN + KP + ++ + ++
Sbjct: 149 KSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKP---------KPKEPLYPET 199
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
+K++VGNL+ +VT+E+L + F E G V+ A+VL T +S G+GFV +S++ + EAA+
Sbjct: 200 EHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAV 259
Query: 241 SSLNNSLLEGQRIRVNKA 258
++LN+ LEG+ +RV+ A
Sbjct: 260 AALNDVELEGRAMRVSLA 277
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ ++ N+ LT+ QE+G V A V+YD TGRSR + FV T + A
Sbjct: 198 ETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEA 257
Query: 139 VIEKLNGTEIGGREIKVNITE 159
+ LN E+ GR ++V++ +
Sbjct: 258 AVAALNDVELEGRAMRVSLAQ 278
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 118/176 (67%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P N+D+ +L I+Q++G E EV+YD+ TGRSR FAFV M TVED NAVIE
Sbjct: 114 KLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIEN 173
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G++ GR ++VN ++KP + ++ + ++ +K++VGNL+ +VTSE L + F
Sbjct: 174 LDGSQFMGRILRVNFSDKP---------KPKEPLYPETEHKLFVGNLSWSVTSESLVEAF 224
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G ++ A+VL T +S G+GFV +++ + E A+ SLN LEG+ +RV+ A
Sbjct: 225 QEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNGVELEGRAMRVSLA 280
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ ++ ++ L + QE+G + A V+YD TGRSR + FV T +
Sbjct: 201 ETEHKLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMEN 260
Query: 139 VIEKLNGTEIGGREIKVNITE 159
+ LNG E+ GR ++V++ +
Sbjct: 261 ALVSLNGVELEGRAMRVSLAQ 281
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 147/263 (55%), Gaps = 21/263 (7%)
Query: 6 SSSSLILS------QQNLIFSKTHFTFQSRQPILQIRF----PKLSYSLHNLKTASIEDS 55
++SS++LS Q NL+ + S Q +L+ F P L S + +
Sbjct: 2 AASSVLLSCFKSHHQPNLLHG---CNYSSNQTLLRFNFSTPKPLLISSRSCSRRFRVLSE 58
Query: 56 TTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIY 115
T + EE +S+ +D P+ ++Y GN+P N+D+ L +I+Q+ E EV+Y
Sbjct: 59 TITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLY 118
Query: 116 DKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDS 175
++ TG+SR FAFV M VED N +I+ L+GTE GR +KVN +KP ++
Sbjct: 119 NRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPN--------KEP 170
Query: 176 NFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235
+ ++ +K++VGNL+ TVTSE L F E G V+ A+V+ T +S G+GFV +SS+ +
Sbjct: 171 LYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAE 230
Query: 236 AEAAISSLNNSLLEGQRIRVNKA 258
E A+ SL+ LEG+ IRVN A
Sbjct: 231 METALESLDGFELEGRAIRVNLA 253
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ + ++ L +E G V A V++D TGRSR + FV + +
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 139 VIEKLNGTEIGGREIKVNITE 159
+E L+G E+ GR I+VN+ +
Sbjct: 234 ALESLDGFELEGRAIRVNLAQ 254
>gi|20159727|gb|AAM11915.1| plastid-specific ribosomal protein 2 precursor [Deschampsia
antarctica]
Length = 114
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 93/115 (80%), Gaps = 1/115 (0%)
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N TE+GGR+IKVN+TE L +D S +AE + FVDS YKVYVGNLAKTVT E+LK FS
Sbjct: 1 NETEVGGRKIKVNVTESFLPNIDPSAPEAEPA-FVDSQYKVYVGNLAKTVTMEVLKNFFS 59
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
EKG+VLSA V RVPGT KS GFGFVTFSS+E+ EAA+S+ NN+ LEGQ IRVN+A
Sbjct: 60 EKGEVLSATVSRVPGTPKSKGFGFVTFSSDEEVEAAVSTFNNTELEGQAIRVNRA 114
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ + + + L E G V A V T +S+ F FV + E+ A +
Sbjct: 39 KVYVGNLAKTVTMEVLKNFFSEKGEVLSATVSRVPGTPKSKGFGFVTFSSDEEVEAAVST 98
Query: 143 LNGTEIGGREIKVN 156
N TE+ G+ I+VN
Sbjct: 99 FNNTELEGQAIRVN 112
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P N+D+ +L ++QE+G E EV+Y + TGRSR FAFV M ++ED VIE
Sbjct: 108 KLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTMSSIEDCETVIEN 167
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G++ GR ++VN +KP + ++ + ++ YK+++GNL+ +VTSE L + F
Sbjct: 168 LDGSQYMGRILRVNFADKP---------KPKEPLYPETEYKLFIGNLSWSVTSESLTQAF 218
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G V+ A+VL T KS G+GFV +S++E+ E A+ SLN LEG+ +RV+ A
Sbjct: 219 QEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQSLNGVELEGRALRVSLA 274
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+++IGN+ ++ ++ LT+ QE+G V A V+YD TG+SR + FV T E+ ++
Sbjct: 199 KLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQS 258
Query: 143 LNGTEIGGREIKVNITE 159
LNG E+ GR ++V++ E
Sbjct: 259 LNGVELEGRALRVSLAE 275
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A R+Y+GN+P +I N EL ++ E G V E++YD+ T RSR FAFV M +VEDA I
Sbjct: 107 AGRLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAI 166
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDL---SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G+++GGR +KVN E P L S + FVDSP+K+Y GNL +TS+
Sbjct: 167 RMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKILNSYRGFVDSPHKIYAGNLGWGLTSQG 226
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L++ F+E+ VLSAKV+ + +S GFGFV+F + E A AA+ +N ++G+ +R+N
Sbjct: 227 LREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNGVEVQGRPLRLNL 286
Query: 258 A 258
A
Sbjct: 287 A 287
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
VD+P ++Y GN+ + + L + E V A+VIY++ +GRSR F FV +T
Sbjct: 207 VDSP----HKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETA 262
Query: 134 EDANAVIEKLNGTEIGGREIKVNITE------KPLVQ 164
E A A ++ +NG E+ GR +++N+ E P++Q
Sbjct: 263 ESARAALDIMNGVEVQGRPLRLNLAEARTPSSPPVIQ 299
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 119/176 (67%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P ++D+ L +++E+G+ E EV+YD+ TG+SR FAFV M VED NAVI+
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G E GR ++VN ++KP + ++ + ++ YK++VGNLA TVTSE L + F
Sbjct: 174 LDGKEFMGRTLRVNFSDKP---------KPKEPLYPETEYKLFVGNLAWTVTSESLTQAF 224
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G V+ A+VL T KS G+GFV+++++ + + A++ ++N LEG+ +RV+ A
Sbjct: 225 QEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLA 280
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + ++ LT+ QEHG V A V++D TG+SR + FV T + + +
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 143 LNGTEIGGREIKVNITE 159
++ E+ GR ++V++ +
Sbjct: 265 MDNVELEGRTLRVSLAQ 281
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 117/179 (65%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P I + EL+++ E G V +++YDK T RSR F FV M T+E+A I+
Sbjct: 118 RLYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTDRSRGFGFVTMGTIEEAKEAIQM 177
Query: 143 LNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
N ++IGGR +KVN+ E P +V + ++ + ++VDSP+K+Y GNL +TS+ LK
Sbjct: 178 FNSSQIGGRTVKVNLPEVPRGGEREVMRTKIRDNNRSYVDSPHKIYAGNLGWNLTSQGLK 237
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F ++ VL AKV+ T +S GFGF++F S ED ++A++++N +EG+ +R+N A
Sbjct: 238 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSALATMNGVEVEGRALRLNLA 296
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S VD+P ++Y GN+ N+ + L + V A+VIY++ TGRSR F F+ +
Sbjct: 214 SYVDSP----HKIYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFE 269
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNIT---EKPLV 163
+ ED + + +NG E+ GR +++N+ E+P V
Sbjct: 270 SAEDVQSALATMNGVEVEGRALRLNLASERERPTV 304
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 119/176 (67%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P ++D+ L +++E+G+ E EV+YD+ TG+SR FAFV M VED NAVI+
Sbjct: 216 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 275
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G E GR ++VN ++KP + ++ + ++ YK++VGNLA TVTSE L + F
Sbjct: 276 LDGKEFMGRTLRVNFSDKP---------KPKEPLYPETEYKLFVGNLAWTVTSESLTQAF 326
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G V+ A+VL T KS G+GFV+++++ + + A++ ++N LEG+ +RV+ A
Sbjct: 327 QEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLA 382
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + ++ LT+ QEHG V A V++D TG+SR + FV T + + +
Sbjct: 307 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 366
Query: 143 LNGTEIGGREIKVNITE 159
++ E+ GR ++V++ +
Sbjct: 367 MDNVELEGRTLRVSLAQ 383
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A R+Y+GN+P +I N L ++ E G V E++YD+ T RSR FAFV M VEDA I
Sbjct: 104 AGRLYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAI 163
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDL---SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G+++GGR +KVN E P L S ++ FVDSP+K+Y GNL +TS+
Sbjct: 164 RMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKIRNSYRGFVDSPHKIYAGNLGWGLTSQG 223
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L++ F+E+ VLSAKV+ + +S GFGFV+F + E A+AA+ +N ++G+ +R+N
Sbjct: 224 LREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGVEVQGRPLRLNL 283
Query: 258 A 258
A
Sbjct: 284 A 284
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
VD+P ++Y GN+ + + L + E V A+VIY++ +GRSR F FV +T
Sbjct: 204 VDSP----HKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETA 259
Query: 134 EDANAVIEKLNGTEIGGREIKVNITE------KPLVQ 164
E A A ++ +NG E+ GR +++N+ E P++Q
Sbjct: 260 ESAQAALDIMNGVEVQGRPLRLNLAEARAPSSPPVIQ 296
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 119/176 (67%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P ++D+ +L IVQ++G E EV+YD+ TG+SR FAFV M ++ED N VIE
Sbjct: 103 KLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIEN 162
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G+ GR ++VN ++KP + ++ + ++ YK++VGNL+ +VTSE+L + F
Sbjct: 163 LDGSAYMGRILRVNFSDKP---------KPKEPLYPETEYKLFVGNLSWSVTSEILTQAF 213
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G V+ A+V+ T KS G+GFV++S++ + E A+ ++N LEG+ IRV+ A
Sbjct: 214 QEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRVSLA 269
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ ++ ++ LT+ QE+G V A VIYD TG+SR + FV T + +E
Sbjct: 194 KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALET 253
Query: 143 LNGTEIGGREIKVNITE 159
+N E+ GR I+V++ E
Sbjct: 254 INELELEGRVIRVSLAE 270
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 117/181 (64%), Gaps = 3/181 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++YIGN+P + + +L+++ E G V +VIYDK T RSR FAFV M T+E+A I
Sbjct: 114 AGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 173
Query: 141 EKLNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G++IGGR ++VN E P +V +++ + FVDSP+K+Y GNL +TS+
Sbjct: 174 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQS 233
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L+ F + +LSAK++ + KS GFGFV+F + EDAE+A+ S+N +EG+ +R+N
Sbjct: 234 LRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 293
Query: 258 A 258
A
Sbjct: 294 A 294
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 123/188 (65%), Gaps = 15/188 (7%)
Query: 71 SSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+SSV+T ++Y GN+P ++D+ +L +++E+G+ E EV+YD+ +G+SR FAFV M
Sbjct: 96 NSSVNT------KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTM 149
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLA 190
VED N VIE L+G E GR ++VN+++KP + ++ + ++ +K++VGNL+
Sbjct: 150 SCVEDCNTVIENLDGKEFLGRTLRVNLSDKP---------KPKEPLYPETEHKLFVGNLS 200
Query: 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250
TVTSE L + F E G V+ A+VL T +S G+GFV +S + E A+ SLNN LEG
Sbjct: 201 WTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEG 260
Query: 251 QRIRVNKA 258
+ IRV+ A
Sbjct: 261 RAIRVSLA 268
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ + ++ L ++ QE+G V A V+YD TGRSR + FV +
Sbjct: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
Query: 139 VIEKLNGTEIGGREIKVNITE 159
+ LN E+ GR I+V++ E
Sbjct: 249 ALISLNNVELEGRAIRVSLAE 269
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 114/178 (64%), Gaps = 1/178 (0%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
+RR+++GN+P ++ + +L ++ E G V E++YD T RSR FAFV M VEDA I
Sbjct: 107 SRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI 166
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+GT +GGR IKVN E P+V + + + +VDSP+K+Y GNL +TS+ L+K
Sbjct: 167 RMFDGTTVGGRAIKVNFPEVPIVGKRVQ-MGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+++ +LSAKV+ KS G+GFV+F + ED E A+S++N ++G+ +R+ A
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLA 283
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 120/176 (68%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P ++D+ +L +++E+G+ E EV+YD+ TG+SR FAF M VED AVIE
Sbjct: 118 KLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDCKAVIEN 177
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G E GR ++VN ++KP +A++S + ++ YK+++GNL+ VTSE+L + F
Sbjct: 178 LDGKEFMGRTLRVNFSDKP---------KAKESLYPETEYKLFIGNLSWKVTSEILTEAF 228
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G V+ A+V+ T S G+GFV+++++ + EAA++ +N+ LEG+ +RV+ A
Sbjct: 229 QEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTIMNDVELEGRALRVSLA 284
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+++IGN+ + ++ LT+ QEHG V A VIYD TG SR + FV + A +
Sbjct: 209 KLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTI 268
Query: 143 LNGTEIGGREIKVNITE 159
+N E+ GR ++V++ +
Sbjct: 269 MNDVELEGRALRVSLAQ 285
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D+ K+Y GNL +V S L E G +VL T KS GF F T + ED +A
Sbjct: 114 DTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDCKA 173
Query: 239 AISSLNNSLLEGQRIRVN 256
I +L+ G+ +RVN
Sbjct: 174 VIENLDGKEFMGRTLRVN 191
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 117/185 (63%), Gaps = 8/185 (4%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
+D P+ ++Y GN+P N+D+ L +I+Q+ E EV+Y++ TG+SR FAFV M V
Sbjct: 71 LDPPAAINTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNV 130
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
ED N +I+ L+GTE GR +KVN +KP ++ + ++ +K++VGNL+ TV
Sbjct: 131 EDCNIIIDNLDGTEYLGRALKVNFADKPKPN--------KEPLYPETEHKLFVGNLSWTV 182
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
TSE L + F E G V+ A+V+ T +S G+GFV +SS+ + E A+ SL+ LEG+ I
Sbjct: 183 TSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 242
Query: 254 RVNKA 258
RVN A
Sbjct: 243 RVNLA 247
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ + ++ L + +E G V A V+YD TGRSR + FV + +
Sbjct: 168 ETEHKLFVGNLSWTVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMET 227
Query: 139 VIEKLNGTEIGGREIKVNITE 159
+E L+G E+ GR I+VN+ +
Sbjct: 228 ALESLDGFELEGRAIRVNLAQ 248
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 116/179 (64%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P I + EL++I E G V +++YDK T RSR F FV M ++E+A ++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKGAMQM 176
Query: 143 LNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
N ++IGGR +KVN E P +V + ++ + ++VDSP+KVY GNL +TS+ LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWDLTSQGLK 236
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F ++ VL AKV+ T +S GFGF++F S E+ ++A++++N +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S VD+P +VY GN+ ++ + L + V A+VIY++ TGRSR F F+ +
Sbjct: 213 SYVDSP----HKVYAGNLGWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFE 268
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNIT---EKPLV 163
+ E+ + + +NG E+ GR +++N+ EKP V
Sbjct: 269 SAENVQSALATMNGVEVEGRALRLNLASEREKPTV 303
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 116/179 (64%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P I + EL++I E G V +++YDK T RSR F FV M ++E+A ++
Sbjct: 109 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 168
Query: 143 LNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
N ++IGGR +KVN E P +V + ++ + ++VDSP+KVY GNL +TS+ LK
Sbjct: 169 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 228
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F ++ VL AKV+ T +S GFGF++F S E+ ++A++++N +EG+ +R+N A
Sbjct: 229 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 287
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S VD+P +VY GN+ N+ + L + V A+VIY++ TGRSR F F+ +
Sbjct: 205 SYVDSP----HKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFE 260
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNIT---EKPLV 163
+ E+ + + +NG E+ GR +++N+ EKP V
Sbjct: 261 SAENVQSALATMNGVEVEGRALRLNLASEREKPTV 295
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+++YVGNL T+TS L + F E G V+ +++ T +S GFGFVT S E+A+ A+
Sbjct: 108 WRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 167
Query: 242 SLNNSLLEGQRIRVN 256
N+S + G+ ++VN
Sbjct: 168 MFNSSQIGGRTVKVN 182
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 116/179 (64%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P I + EL++I E G V +++YDK T RSR F FV M ++E+A ++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 143 LNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
N ++IGGR +KVN E P +V + ++ + ++VDSP+KVY GNL +TS+ LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F ++ VL AKV+ T +S GFGF++F S E+ ++A++++N +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S VD+P +VY GN+ N+ + L + V A+VIY++ TGRSR F F+ +
Sbjct: 213 SYVDSP----HKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFE 268
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNIT---EKPLV 163
+ E+ + + +NG E+ GR +++N+ EKP V
Sbjct: 269 SAENVQSALATMNGVEVEGRALRLNLASEREKPTV 303
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 118/179 (65%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P ++ + +L++I E G V E++YD+ T RSR FAFV M +VE+A I
Sbjct: 110 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 169
Query: 143 LNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+G+++GGR +KVN E P +V + +++ FVDSP+K+YV NL+ +TS+ L+
Sbjct: 170 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 229
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+++ +SAKV+ + +S GFGF+TFSS E ++A+ ++N LEG+ +R+N A
Sbjct: 230 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVELEGRPLRLNVA 288
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
VD+P ++Y+ N+ + + L + A+VIYD+ +GRSR F F+ +
Sbjct: 208 VDSP----HKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSA 263
Query: 134 EDANAVIEKLNGTEIGGREIKVNI 157
E + ++ +N E+ GR +++N+
Sbjct: 264 EAMKSALDTMNEVELEGRPLRLNV 287
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 118/181 (65%), Gaps = 3/181 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A R+Y+GN+P ++ + +L + E G+V E++YD+ T RSR FAFV M +V++A I
Sbjct: 102 ASRLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAI 161
Query: 141 EKLNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G+++GGR +KVN E P V +++ FVDSPYK+Y GNL+ +TSE
Sbjct: 162 RMFDGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEG 221
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L+ F++ +L AKV+ + +S GFGF++F+S E+AE+A++++N +EG+ +R+N
Sbjct: 222 LRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPLRLNL 281
Query: 258 A 258
A
Sbjct: 282 A 282
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 116/176 (65%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P N+D+ +L I+QE+G+ E EV+Y + TGRSR FAFV M ++ED NAVIE
Sbjct: 108 KLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSIEDCNAVIEN 167
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+ ++ GR ++VN ++ P + ++ + ++ YK++VGNL+ + TSE L + F
Sbjct: 168 LDESQYMGRILRVNFSDNP---------KPKEPLYPETEYKLFVGNLSWSATSESLTQAF 218
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G V+ A+VL T KS G+GFV +S++ + + A+ SL+ LEG+ +RV+ A
Sbjct: 219 QEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDGVELEGRALRVSLA 274
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + ++ LT+ QE+G V A V+YD TG+SR + FV T + +
Sbjct: 199 KLFVGNLSWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVS 258
Query: 143 LNGTEIGGREIKVNITE 159
L+G E+ GR ++V++ E
Sbjct: 259 LDGVELEGRALRVSLAE 275
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 134/234 (57%), Gaps = 20/234 (8%)
Query: 40 LSYSLHNLKTASIEDSTTRLF-----AVAEETASSSSSSVDTPSEFAR--RVYIGNIPRN 92
L ++L L+ S R+F AV+ E + + D EF+ ++++GN+P +
Sbjct: 31 LPFTLP-LRAVSAPAPARRVFEPVAVAVSSEYGTEGAEQQD--GEFSEDLKLFVGNLPFS 87
Query: 93 IDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152
+D+ +L + ++ G+VE EV+YD+ TGRSR F FV M + E+A A +E+ NG GR
Sbjct: 88 VDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRP 147
Query: 153 IKVNITEKPLVQVDLSLLQAE--------DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
++VN P D S +A +FVDS KVYVGNLA V + L+ FSE
Sbjct: 148 LRVNCGPPP--PRDGSAPRAPRGGGGGGGGGSFVDSGNKVYVGNLAWGVDNSTLENLFSE 205
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+GQVL AKV+ + +S GFGFVT+ S E+ AIS+L+ L+G++IRV A
Sbjct: 206 QGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISNLDGIDLDGRQIRVTVA 259
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ +DN L + E G V A+VIYD+ +GRSR F FV + E+ N I
Sbjct: 184 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISN 243
Query: 143 LNGTEIGGREIKVNITE-KP 161
L+G ++ GR+I+V + E KP
Sbjct: 244 LDGIDLDGRQIRVTVAESKP 263
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 117/179 (65%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P ++ + +L++I E G V E++YD+ T RSR FAFV M +VE+A I
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 143 LNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+G+++GGR +KVN E P +V + +++ FVDSP+K+YV NL+ +TS+ L+
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+++ +SAKV+ + +S GFGF+TFSS E +A+ ++N LEG+ +R+N A
Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 118/181 (65%), Gaps = 3/181 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A R+Y+GN+P ++ + +L + E G+V E++YD+ T RSR FAFV M +V++A I
Sbjct: 245 ASRLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAI 304
Query: 141 EKLNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G+++GGR +KVN E P V +++ FVDSPYK+Y GNL+ +TSE
Sbjct: 305 RMFDGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEG 364
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L+ F++ +L AKV+ + +S GFGF++F+S E+AE+A++++B +EG+ +R+N
Sbjct: 365 LRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMBEVEVEGRPLRLNL 424
Query: 258 A 258
A
Sbjct: 425 A 425
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 116/176 (65%), Gaps = 9/176 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P ++D+ L +++E+G+ E EV+YD+ TG+SR FAFV M VED NAVI+
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G E GR ++VN ++KP + ++ + ++ YK++VGNLA TVT E + F
Sbjct: 174 LDGKEFMGRTLRVNFSDKP---------KPKEPLYPETEYKLFVGNLAWTVTFESFTQAF 224
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G V+ A+VL T K G+GFV+++++ + + A++ ++N LEG+ +RV+ A
Sbjct: 225 QEHGTVVGARVLFDGETGKFRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLA 280
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + + T+ QEHG V A V++D TG+ R + FV T + + +
Sbjct: 205 KLFVGNLAWTVTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSEMDTALAI 264
Query: 143 LNGTEIGGREIKVNITE 159
++ E+ GR ++V++ +
Sbjct: 265 MDNVELEGRTLRVSLAQ 281
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 124/200 (62%), Gaps = 8/200 (4%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
+VA+ +S ++ V +F ++Y+GN+P D+ +L +I +HG V+ EVIYDK +G
Sbjct: 23 SVADGGSSDVAAPVAEEEQFETKLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIYDKISG 82
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI--TEKPLVQVDLSLLQAEDSNFV 178
RSR FAFV M T EDA AVI L+GT++GGR +KVN ++K +V+ S +D+N
Sbjct: 83 RSRGFAFVTMATPEDAQAVINALDGTDMGGRPLKVNYPQSQKDKPRVERSERPRDDAN-- 140
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
K++VGNL+ L FSE G V+ AKV+ + +S GFGFVT S A A
Sbjct: 141 ----KLFVGNLSWGCDEAALYSFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANA 196
Query: 239 AISSLNNSLLEGQRIRVNKA 258
AI +L+ + L+G+R+RVN A
Sbjct: 197 AIENLDGAELDGRRLRVNLA 216
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 15/225 (6%)
Query: 40 LSYSLHN--LKTASIEDSTTRL----FAVAEETASSSSSSVDTPSEFARRVYIGNIPRNI 93
LS SL++ L + S +D+ L F E AS ++ S R+++GN+P ++
Sbjct: 48 LSLSLYHFPLSSLSFQDTQKPLQRETFQKPEPNASHTNQS--------SRLFVGNLPYSL 99
Query: 94 DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153
+ +L + E G V E++YD RSR FAFV M ++EDA I +G+EIGGR +
Sbjct: 100 LSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIRMFDGSEIGGRIM 159
Query: 154 KVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKV 213
KVN T P L ++ + FVDSP+K+Y GNL +TS+ L+ F+E+ LSAKV
Sbjct: 160 KVNFTAIPKRGKRL-VMGSNYRGFVDSPHKIYAGNLGWGLTSQDLRDAFAEQPGFLSAKV 218
Query: 214 LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ + +S G+GFV+F + ED EAA++S+N ++G+ +R+N A
Sbjct: 219 IYERNSGRSRGYGFVSFETAEDVEAALNSMNGVEVQGRPLRLNLA 263
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+D+ L + + G VE EVIYDK TGRSR F FV M T+E+ A ++
Sbjct: 91 KLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQ 150
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG E+ GR ++VN P + S F DS +VYVGNL+ V + L+ F
Sbjct: 151 FNGYELDGRTLRVNFGPPPQKESSFSRGPRGGETF-DSGNRVYVGNLSWNVDNLALETLF 209
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
EKG+V+ AKV+ + +S GFGFVT+SS E+ + AI SLN + L+G+ IRV+ A
Sbjct: 210 REKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELDGRAIRVSVA 265
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
RVY+GN+ N+DN L + +E G V A+V+YD+ +GRSR F FV + E+ + I
Sbjct: 188 GNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAI 247
Query: 141 EKLNGTEIGGREIKVNITE-KPLVQ 164
+ LNG E+ GR I+V++ E KP Q
Sbjct: 248 DSLNGAELDGRAIRVSVAEAKPRRQ 272
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 112/175 (64%), Gaps = 5/175 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+PR+ D+ +LT + QE G VE AEV+ ++ TG SR FAFV M TV +A A IEK
Sbjct: 103 KLYVGNLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTVIEAKAAIEK 162
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L G+++GGR++ VN L + + + ED +V++PY+++ GNLA +V +E+L+ F
Sbjct: 163 LQGSDLGGRDMIVNFPAAVLSRGN----KTEDE-YVETPYQLFAGNLAWSVKNEILRDLF 217
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
SE G VL AKV+ FGFV SS+ + EAAI SLN G+ + V +
Sbjct: 218 SEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVSLNGKEFHGRNLVVRQ 272
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 112/187 (59%), Gaps = 11/187 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+++ +L + + G VE EV YDK TGRSR F FV M T+E+ A ++
Sbjct: 92 QLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQ 151
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF-----------VDSPYKVYVGNLAK 191
NG E+ GR ++VN P + S L +++F DS +VYVGNL+
Sbjct: 152 FNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPGARGGETFDSSNRVYVGNLSW 211
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
V L+ F EKG+V+ AKV+ + +S GFGFVT+SS E+ E A+ SLN + L+G+
Sbjct: 212 NVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSLNGAELDGR 271
Query: 252 RIRVNKA 258
IRV+ A
Sbjct: 272 AIRVSVA 278
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ N+D+ L + +E G V A+V+YD+ +GRS+ F FV + E+ ++
Sbjct: 203 RVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDS 262
Query: 143 LNGTEIGGREIKVNITE-KP 161
LNG E+ GR I+V++ E KP
Sbjct: 263 LNGAELDGRAIRVSVAEAKP 282
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 114/178 (64%), Gaps = 4/178 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+V++GN+P ++D+ +L + ++ G+VE EV+YD+ TGRSR F FV M T E+A A +E+
Sbjct: 76 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 135
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSL--LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
NG GR ++VN + P + D + + SNF DS K+YVGNLA V + L+
Sbjct: 136 FNGYTFQGRPLRVN-SGPPPPRDDFAPRSPRGGGSNF-DSSNKLYVGNLAWGVDNSTLEN 193
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FSE+G VL AKV+ + +S GFGFVT+ S E+ AIS+L+ L+G++IRV A
Sbjct: 194 LFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVA 251
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+ +DN L + E G V A+VIYD+ +GRSR F FV + E+ N I
Sbjct: 176 KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISN 235
Query: 143 LNGTEIGGREIKVNITE-KPLVQ 164
L+G ++ GR+I+V + E KP Q
Sbjct: 236 LDGVDLDGRQIRVTVAESKPRRQ 258
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 114/178 (64%), Gaps = 4/178 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+V++GN+P ++D+ +L + ++ G+VE EV+YD+ TGRSR F FV M T E+A A +E+
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSL--LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
NG GR ++VN + P + D + + SNF DS K+YVGNLA V + L+
Sbjct: 141 FNGYTFQGRPLRVN-SGPPPPRDDFAPRSPRGGGSNF-DSSNKLYVGNLAWGVDNSTLEN 198
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FSE+G VL AKV+ + +S GFGFVT+ S E+ AIS+L+ L+G++IRV A
Sbjct: 199 LFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVA 256
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+ +DN L + E G V A+VIYD+ +GRSR F FV + E+ N I
Sbjct: 181 KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISN 240
Query: 143 LNGTEIGGREIKVNITE-KPLVQ 164
L+G ++ GR+I+V + E KP Q
Sbjct: 241 LDGVDLDGRQIRVTVAESKPRRQ 263
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 113/176 (64%), Gaps = 5/176 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+PR+ D +LT++ QE G VE EV+ ++ TG SR FAFV M TV++A + IEK
Sbjct: 95 KLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEK 154
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L G+++GGR++ VN K LS + D +++++PY+++VGNLA +V E+LK F
Sbjct: 155 LQGSDLGGRDMIVNFPAKV-----LSKKKETDDSYIETPYQLFVGNLAWSVKKEILKSLF 209
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G V +AKV+ FGFV SS+ + E AI SL+ G+ ++V +A
Sbjct: 210 SQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLKVRQA 265
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 22/204 (10%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S ++TP + +++GN+ ++ + L + +HG V A+VIY G R F FV +
Sbjct: 183 SYIETPYQ----LFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLS 238
Query: 132 TVEDANAVIEKLNGTEIGGREIKV-----------------NITEKPLVQVDLSLLQAED 174
+ + I L+G E GR +KV NI KP V+ S+ +
Sbjct: 239 SQSEMEDAIVSLHGKEFHGRNLKVRQARPTSKDMVVSDVEENIA-KPSTMVEDSMTETVK 297
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
+ FV S Y VYV NL+ +V ++ L + FS+ G VL A+VL +S +GFV FSS+
Sbjct: 298 ATFVGSAYGVYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQA 357
Query: 235 DAEAAISSLNNSLLEGQRIRVNKA 258
+ EAAI++L+ +++ V +A
Sbjct: 358 EVEAAIAALDKKEFYERKLVVKEA 381
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 116/183 (63%), Gaps = 7/183 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++YIGN+P D+ +L I QE G+VE EVIYD+ +GRSR FAFV M T EDA VIE+
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 143 LNGTEIGGREIKVNITE----KPLVQVDLSLLQAEDSNFV---DSPYKVYVGNLAKTVTS 195
L+G ++GGR +KV+ + +P ++E + D P KV+VGNL+ V +
Sbjct: 61 LDGHDVGGRPLKVSFPQSKQNRPSFPRGEGYQRSERAPRPAARDDPNKVFVGNLSWGVDN 120
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
L++ FS+ G+V+ A+V+ + +S GFGFVT+S + +AAI SL+ + +G+ +RV
Sbjct: 121 GALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDSLDGAEFDGRELRV 180
Query: 256 NKA 258
N A
Sbjct: 181 NLA 183
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 114/178 (64%), Gaps = 4/178 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+V++GN+P ++D+ +L + ++ G+VE EV+YD+ TGRSR F FV M T E+A A IE+
Sbjct: 22 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAIEQ 81
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLL--QAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
NG GR ++VN + P + D + + SNF DS K+YVGNLA V + L+
Sbjct: 82 FNGYTFQGRPLRVN-SGPPPPRDDFAPRSPRGGGSNF-DSSNKLYVGNLAWGVDNSTLEN 139
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FSE+G VL AKV+ + +S GFGFVT+ S E+ AIS+L+ L+G++IRV A
Sbjct: 140 LFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVA 197
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+ +DN L + E G V A+VIYD+ +GRSR F FV + E+ N I
Sbjct: 122 KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISN 181
Query: 143 LNGTEIGGREIKVNITE-KPLVQ 164
L+G ++ GR+I+V + E KP Q
Sbjct: 182 LDGVDLDGRQIRVTVAESKPRRQ 204
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 150/291 (51%), Gaps = 55/291 (18%)
Query: 3 SISSSSSLILSQQNLIFSKTHFTFQSRQPILQIRFPKLSYSLHNLKTASIEDSTTRLFAV 62
S +S+SSL+L N KT +PI LS+ LH K SI S F
Sbjct: 2 STASASSLVLPSLN---PKTLSLCNPNKPI------SLSFKLH-AKPISIPSSLFSSFVP 51
Query: 63 AEETASSSSS----SVDTPSEFAR-----------------RVYIGNIPRNIDNDELTKI 101
++ SSSS SV SEF + ++++GN+P N+D+ +L +
Sbjct: 52 LQQQPYSSSSRFVPSVAISSEFGQEEDVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGL 111
Query: 102 VQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ G VE EVIYDK TGRSR F FV M ++++ A ++ NG E+ GR ++VN P
Sbjct: 112 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSGPPP 171
Query: 162 LVQVDLSLLQAEDSNFVDSPY--------------KVYVGNLAKTVTSEMLKKCFSEKGQ 207
+S+F SP ++YVGNL+ +V + L+ FSE+G+
Sbjct: 172 ----------QRESSFSRSPRFGGGGGGGESLEGNRLYVGNLSWSVDNLALESFFSEQGK 221
Query: 208 VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
V+ AKV+ + +S GFGFVT+SS E+ E AI SLN + L+G+ IRV+ A
Sbjct: 222 VVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAIRVSVA 272
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+ ++DN L E G V A+V+YD+ +GRSR F FV + E+ I+
Sbjct: 197 RLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDS 256
Query: 143 LNGTEIGGREIKVNITE 159
LNG E+ GR I+V++ E
Sbjct: 257 LNGAELDGRAIRVSVAE 273
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 113/184 (61%), Gaps = 10/184 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D+ +L + ++ G+VE EV+YD+ TGRSR F FV M + E+A A +E+
Sbjct: 79 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQ 138
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAE--------DSNFVDSPYKVYVGNLAKTVT 194
NG GR ++VN P D S +A +FVDS KVYVGNLA V
Sbjct: 139 FNGYTFQGRPLRVNCGPPP--PRDESAPRAPRGGGGGGGGGSFVDSANKVYVGNLAWGVD 196
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+ L+ FSE+GQVL AKV+ + +S GFGFVT+ + + AIS+L+ L+G++IR
Sbjct: 197 NSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISNLDGIDLDGRQIR 256
Query: 255 VNKA 258
V A
Sbjct: 257 VTVA 260
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A +VY+GN+ +DN L + E G V A+VIYD+ +GRSR F FV T + N I
Sbjct: 183 ANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAI 242
Query: 141 EKLNGTEIGGREIKVNITE-KPLVQ 164
L+G ++ GR+I+V + E KP Q
Sbjct: 243 SNLDGIDLDGRQIRVTVAESKPRRQ 267
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 110/176 (62%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RV++GN+P ++D+ +L + ++ G+VE EVIYDK TGRSR F FV M +V++ A +E+
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVQEVEAAVEQ 143
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR ++VN P D+N +VYVGNL+ V + L F
Sbjct: 144 FNGYVLDGRSLRVNSGPPPPRDPSSQRGPRGDAN------RVYVGNLSWGVDNSALANLF 197
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE+G+VL A+++ + +S GFGFVT+ S E+ E AIS+L+ S L+G++IRV A
Sbjct: 198 SEQGEVLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGSDLDGRQIRVTVA 253
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
SS P A RVY+GN+ +DN L + E G V +A ++YD+ +GRSR F FV
Sbjct: 167 SSQRGPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFVTYG 226
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITE-KP 161
+ E+ I L+G+++ GR+I+V + E KP
Sbjct: 227 SAEEVENAISNLDGSDLDGRQIRVTVAESKP 257
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 121/178 (67%), Gaps = 9/178 (5%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++Y GN+P ++D+ +L ++Q+ G+ E EV+YD+ TG+SR FAFV M +ED NAVI
Sbjct: 116 ATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVI 175
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E L+G E GR ++VN + KP + ++ + ++ +K++VGNL+ +VT+E+L +
Sbjct: 176 ENLDGKEFLGRTLRVNFSSKP---------KPKEPLYPETEHKLFVGNLSWSVTNEILTQ 226
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E G V+ A+VL T +S G+GFV +S++ + EAA+++LN+ LEG+ +RV+ A
Sbjct: 227 AFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVSLA 284
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ ++ N+ LT+ QE+G V A V+YD TGRSR + FV T + A
Sbjct: 205 ETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEA 264
Query: 139 VIEKLNGTEIGGREIKVNITE 159
+ LN E+ GR ++V++ +
Sbjct: 265 ALAALNDVELEGRAMRVSLAQ 285
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 117/179 (65%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+P ++ + ELT++ +E G V AEVIYD+ T RSR F FV M +VE+A I+
Sbjct: 114 KLYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAIQM 173
Query: 143 LNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NGT+ GGR ++VN E P +V +Q+ F+DS +K+Y GNL +TSE L+
Sbjct: 174 FNGTQFGGRSVRVNFPEVPRGGEREVMGPRIQSGYKGFIDSEHKIYAGNLGWRLTSEGLR 233
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ + VLSAKV+ + +S GFGFV+F S E+AEAA+ ++N +EG+ +R+N A
Sbjct: 234 DAFANQPGVLSAKVIYERDSRRSRGFGFVSFESAENAEAALEAMNGEEVEGRPMRLNLA 292
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 7/202 (3%)
Query: 64 EETASSSSSSVDTP---SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
E +A S V P + +VY+GN+P D+ +L +I +HG V+ EVIYDK +G
Sbjct: 2 EVSAGSGEDDVAAPVAEEQLGSKVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSG 61
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT----EKPLVQVDLSLLQAEDSN 176
RSR FAFV M + +DA A+I L+G+++GGR +KVN +KP + + D
Sbjct: 62 RSRGFAFVTMASHDDAQALINALDGSDMGGRALKVNFPQSQKDKPRFEKSEARPPTADRR 121
Query: 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
D P K++VGN+ + FS G V+ AK++ + +S GFGFVT DA
Sbjct: 122 PRDDPNKLFVGNIPWGCDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTMEKVGDA 181
Query: 237 EAAISSLNNSLLEGQRIRVNKA 258
+ A+ +L+ + L+G+ +RVN A
Sbjct: 182 QTAMENLDGTELDGRELRVNFA 203
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 108/176 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P +D+ +L + + G VE+ EVIYDK TGRSR F FV M TV + A ++
Sbjct: 94 KLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQ 153
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG E+ GR ++VN P + D S + +++ D+ +V+V NLA V L+ F
Sbjct: 154 FNGYELDGRLLRVNYGPPPPKRDDSSFRGSRNASRFDNRNRVHVSNLAWGVDDLTLENLF 213
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
EKG VL AKV+ + KS GFGFVT++S E+ AI SL+ L+G+ IRV +A
Sbjct: 214 REKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRPIRVTQA 269
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RV++ N+ +D+ L + +E G V +A+V+YD+ +G+SR F FV + E+ N I+
Sbjct: 194 RVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQS 253
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR I+V E
Sbjct: 254 LDGVDLDGRPIRVTQAE 270
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 109/165 (66%), Gaps = 3/165 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P ++ + +L++I E G V E++YD+ T RSR FAFV M +VE+A I
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 143 LNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+G+++GGR +KVN E P +V + +++ FVDSP+K+YV NL+ +TS+ L+
Sbjct: 164 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 223
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
F+++ +SAKV+ + +S GFGF+TFSS E ++A+ ++N
Sbjct: 224 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMN 268
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
++YVGNL ++TS L + F+E G V + +++ T +S GF FVT S E+A+ AI
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 243 LNNSLLEGQRIRVN 256
+ S + G+ ++VN
Sbjct: 164 FDGSQVGGRTVKVN 177
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RV++GN+P ++D+ +L + ++ G+VE EVIYDK TGRSR F FV M +VE+ A +E+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR ++VN P + ++N +VYVGNL+ V + L F
Sbjct: 147 FNGYILDGRSLRVNSGPPPPREQSSQRAPRGEAN------RVYVGNLSWGVDNAALANLF 200
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S +G+VL AKV+ + +S GFGFVT+ S E+ E A+S+L+ + ++G++IRV A
Sbjct: 201 SGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVA 256
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
SS P A RVY+GN+ +DN L + G V +A+VIYD+ +GRSR F FV
Sbjct: 170 SSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYG 229
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITE-KP 161
+ E+ + L+G ++ GR+I+V + E KP
Sbjct: 230 SAEEVENAVSNLDGADMDGRQIRVTVAESKP 260
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RV++GN+P ++D+ +L + ++ G+VE EVIYDK TGRSR F FV M +VE+ A +E+
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR ++VN P + ++N +VYVGNL+ V + L F
Sbjct: 147 FNGYILDGRSLRVNSGPPPPREQSSRRAPRGEAN------RVYVGNLSWGVDNAALANLF 200
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S +G+VL AKV+ + +S GFGFVT+ S E+ E A+S+L+ + ++G++IRV A
Sbjct: 201 SGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVA 256
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
SS P A RVY+GN+ +DN L + G V +A+VIYD+ +GRSR F FV
Sbjct: 170 SSRRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYG 229
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITE-KP 161
+ E+ + L+G ++ GR+I+V + E KP
Sbjct: 230 SAEEVENAVSNLDGADMDGRQIRVTVAESKP 260
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 16/191 (8%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+D+ L + ++ G VE EVIYDK TGRSR F FV M TVE+ A ++
Sbjct: 91 KLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQ 150
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF---------------VDSPYKVYVG 187
NG E+ GR+++VN + P + + S + E+SNF ++S ++YVG
Sbjct: 151 FNGYELEGRQLRVN-SGPPPARRENSNFRGENSNFRGENTNFRGPRGGANLNSTNRIYVG 209
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL+ V L+ FSE+G+V A+V+ T +S GFGFVT++S E+ AI SL+
Sbjct: 210 NLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDGVD 269
Query: 248 LEGQRIRVNKA 258
L G+ IRV A
Sbjct: 270 LNGRSIRVTMA 280
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+ +D+ L + E G V +A VIYD+ TGRSR F FV + E+ N IE
Sbjct: 205 RIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIES 264
Query: 143 LNGTEIGGREIKVNITE-KPLVQ 164
L+G ++ GR I+V + E +P Q
Sbjct: 265 LDGVDLNGRSIRVTMAEARPRRQ 287
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 121/217 (55%), Gaps = 21/217 (9%)
Query: 49 TASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAV 108
T + DS ++ V E S P E A+ +++GN+P ++D++ L +I G V
Sbjct: 96 TQNFGDSEPQVSGVGNEDEEESEQGFSEPPEEAK-LFVGNLPYDVDSERLAQIFDGAGVV 154
Query: 109 EKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT-------EKP 161
E AEVIY++ T RSR F FV M TVE+A +E LNG ++ GR + VN E+P
Sbjct: 155 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMLNGFDMNGRLLTVNKAAPRGSRPERP 214
Query: 162 LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK 221
+ + S +VYVGNL V + L++ FSE G+VLSA+V+ T +
Sbjct: 215 PREFEPSC-------------RVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGR 261
Query: 222 SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S GFGFV+ +SE + AI++L+ L+G+ IRVN A
Sbjct: 262 SRGFGFVSMASESEMNDAIAALDGQTLDGRAIRVNVA 298
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPSEF--ARRVYIGNIPRNIDNDELTKIVQEHGAVEKA 111
D RL V + A S P EF + RVY+GN+P ++DN L ++ EHG V A
Sbjct: 193 DMNGRLLTV-NKAAPRGSRPERPPREFEPSCRVYVGNLPWDVDNARLEQVFSEHGKVLSA 251
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
V+ D+ TGRSR F FV M + + N I L+G + GR I+VN+ E+
Sbjct: 252 RVVSDRETGRSRGFGFVSMASESEMNDAIAALDGQTLDGRAIRVNVAEE 300
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V EE + S D SE RV++GN+P ++D+ +L + ++ G+VE EVIYDK TGR
Sbjct: 62 VTEELEAEGRSGGDEFSE-DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR 120
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAE----DSNF 177
SR F FV M +VE+ +++ NG + GR ++VN P D S + D+N
Sbjct: 121 SRGFGFVTMSSVEEVEVAVDQFNGYVLDGRSLRVNSGPPP--PRDRSSRSPQRPRGDAN- 177
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+VYVGNL+ V + L FSE+G+VL A+++ + +S GFGFVT+ S E+ E
Sbjct: 178 -----RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVE 232
Query: 238 AAISSLNNSLLEGQRIRVNKA 258
AIS+L+ + L+G++IRV A
Sbjct: 233 NAISNLDGADLDGRQIRVTVA 253
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 70 SSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVM 129
SS S P A RVY+GN+ +DN L + E G V +A +IYD+ +GRSR F FV
Sbjct: 165 SSRSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVT 224
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITE-KPLVQ 164
+ E+ I L+G ++ GR+I+V + E KP Q
Sbjct: 225 YGSAEEVENAISNLDGADLDGRQIRVTVAESKPPRQ 260
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 75 DTPSEFAR--RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT 132
D+ +E++ +V++GN+P +D+ +L + ++ G+VE EV+YD+ TGRSR F FV M +
Sbjct: 78 DSEAEYSEDLKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGS 137
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKP-----LVQVDLSLLQAEDSNFVDSPYKVYVG 187
VE+ A +E+ NG GR ++VN P + ++ DS K+YVG
Sbjct: 138 VEEVAAAVEQFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRAMGGGGGGGSFDSANKLYVG 197
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL+ V + L+ FSE+G+VL AKV+ + +S GFGFVT+ S ++ AIS+L+
Sbjct: 198 NLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVD 257
Query: 248 LEGQRIRVNKA 258
L+G++IRV A
Sbjct: 258 LDGRQIRVTVA 268
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++Y+GN+ +DN L + E G V A+VIYD+ +GRSR F FV + ++ N I
Sbjct: 191 ANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAI 250
Query: 141 EKLNGTEIGGREIKVNITE-KPLVQ 164
L+G ++ GR+I+V + E KP Q
Sbjct: 251 SNLDGVDLDGRQIRVTVAESKPREQ 275
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D+ L + + G VE EVIYDK TGRSR F FV M T E+ A ++
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPY 182
NG EI GR I+VN P + + S N VDS
Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 207
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
+VYVGNL+ V LK+ FSE+G V+ AKV+ + +S GFGFVT+SS ++ AI S
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+ IRV+ A
Sbjct: 268 LNGVDLDGRSIRVSAA 283
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267
Query: 143 LNGTEIGGREIKVNITEK 160
LNG ++ GR I+V+ E+
Sbjct: 268 LNGVDLDGRSIRVSAAEE 285
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 118/199 (59%), Gaps = 9/199 (4%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V EE + S D S+ RV++GN+P ++D+ +L + ++ G+VE EVIYDK TGR
Sbjct: 64 VTEELEAEGRSGGDEFSD-DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR 122
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAE--DSNFVD 179
SR F FV M +VE+ +++ NG + GR ++VN P Q D+N
Sbjct: 123 SRGFGFVTMSSVEEVEVAVDQFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDAN--- 179
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
+VYVGNL+ V + L FSE+G+VL A+++ + +S GFGFVT+ S E+ E A
Sbjct: 180 ---RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 236
Query: 240 ISSLNNSLLEGQRIRVNKA 258
IS+L+ + L+G++IRV A
Sbjct: 237 ISNLDGADLDGRQIRVTVA 255
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P A RVY+GN+ +DN L + E G V +A +IYD+ +GRSR F FV + E+
Sbjct: 174 PRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEV 233
Query: 137 NAVIEKLNGTEIGGREIKVNITE-KP 161
I L+G ++ GR+I+V + E KP
Sbjct: 234 ENAISNLDGADLDGRQIRVTVAESKP 259
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 118/199 (59%), Gaps = 9/199 (4%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V EE + S D S+ RV++GN+P ++D+ +L + ++ G+VE EVIYDK TGR
Sbjct: 62 VTEELEAEGRSGGDEFSD-DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR 120
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAE--DSNFVD 179
SR F FV M +VE+ +++ NG + GR ++VN P Q D+N
Sbjct: 121 SRGFGFVTMSSVEEVEVAVDQFNGYVLDGRSLRVNSGPPPPRDRSSPSPQRPRGDAN--- 177
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
+VYVGNL+ V + L FSE+G+VL A+++ + +S GFGFVT+ S E+ E A
Sbjct: 178 ---RVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 234
Query: 240 ISSLNNSLLEGQRIRVNKA 258
IS+L+ + L+G++IRV A
Sbjct: 235 ISNLDGADLDGRQIRVTVA 253
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P A RVY+GN+ +DN L + E G V +A +IYD+ +GRSR F FV + E+
Sbjct: 172 PRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEV 231
Query: 137 NAVIEKLNGTEIGGREIKVNITE-KP 161
I L+G ++ GR+I+V + E KP
Sbjct: 232 ENAISNLDGADLDGRQIRVTVAESKP 257
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 108/180 (60%), Gaps = 9/180 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+++GN+P ++EL ++ E G V+ A++IYDK T RSR FAFV M T E+A I+
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 172
Query: 143 LNGTEIGGREIKVNITEKPLVQ----VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+G +GGR +VN E P V +S + +D YK+Y GNL V ++ L
Sbjct: 173 FDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDDGT-----YKIYAGNLGWGVRADTL 227
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ F + +L A+V+ T +S GFGFV+FS+ EDA+AA+ SL+ LEG+ +R++ A
Sbjct: 228 RNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGVELEGRPLRLSLA 287
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+ + D L + + + A VI+++ TGRSR F FV T EDA A +E
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 271
Query: 143 LNGTEIGGREIKVNITEK 160
L+G E+ GR +++++ E+
Sbjct: 272 LDGVELEGRPLRLSLAEQ 289
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 108/180 (60%), Gaps = 9/180 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+++GN+P ++EL ++ E G V+ A++IYDK T RSR FAFV M T E+A I+
Sbjct: 113 RLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 172
Query: 143 LNGTEIGGREIKVNITEKPLVQ----VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+G +GGR +VN E P V +S + +D YK+Y GNL V ++ L
Sbjct: 173 FDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRDDGT-----YKIYAGNLGWGVRADTL 227
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ F + +L A+V+ T +S GFGFV+FS+ EDA+AA+ SL+ LEG+ +R++ A
Sbjct: 228 RNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALESLDGVELEGRSLRLSLA 287
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+ + D L + + + A VI+++ TGRSR F FV T EDA A +E
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 271
Query: 143 LNGTEIGGREIKVNITEK 160
L+G E+ GR +++++ E+
Sbjct: 272 LDGVELEGRSLRLSLAEQ 289
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 5/181 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D+ +L + ++ G+VE EV+YD+ TGRSR F FV M + E+A A +E+
Sbjct: 80 KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAEAAVEQ 139
Query: 143 LNGTEIGGREIKVNITEKP-----LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG GR+++VN P + FVDS KVYVGNLA V +
Sbjct: 140 FNGYAFQGRQLRVNCGPPPPRDESTPRAPRGGGGGGGGGFVDSANKVYVGNLAWGVDNST 199
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L+ FSE+GQVL AKV+ + +S GFGFVT+ S ++ AIS+L+ L+G++IRV
Sbjct: 200 LENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAISNLDGIDLDGRQIRVTA 259
Query: 258 A 258
A
Sbjct: 260 A 260
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A +VY+GN+ +DN L + E G V A+VIYD+ +GRSR F FV + ++ N I
Sbjct: 183 ANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAI 242
Query: 141 EKLNGTEIGGREIKVNITE-KPLVQ 164
L+G ++ GR+I+V E KP Q
Sbjct: 243 SNLDGIDLDGRQIRVTAAESKPRRQ 267
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+V++GN+P ++D+ EL ++ ++ G V EVIYD+ TGRSR FAFV M T DA+ +EK
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 143 LNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG E GR ++VN P + S +S +V+VGNL L+
Sbjct: 174 FNGYEYQGRTLRVNSGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFVGNLPWGADDLSLE 233
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ FS+ G+V+ AKV+ T +S GFGFVT SS ++ E AISSL+ S ++G++I+V A
Sbjct: 234 QLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGSDMDGRQIKVTLA 292
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A RV++GN+P D+ L ++ +HG V +A+V+YD+ TGRSR F FV + + ++ I
Sbjct: 215 ANRVFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAI 274
Query: 141 EKLNGTEIGGREIKVNITE-KP 161
L+G+++ GR+IKV + E KP
Sbjct: 275 SSLDGSDMDGRQIKVTLAETKP 296
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 107/182 (58%), Gaps = 6/182 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +VE+A A ++
Sbjct: 87 KLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQ 146
Query: 143 LNGTEIGGREIKVNITEKPL------VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG E+ GR ++VN P S + DS +V+V NLA V +
Sbjct: 147 FNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDNV 206
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
LK F E+G VL A+V+ + +S GFGFVTFSS ++ +AI SLN L G+ IRV+
Sbjct: 207 ALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGRAIRVS 266
Query: 257 KA 258
A
Sbjct: 267 LA 268
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS+ RV++ N+ +DN L + +E G V +A VIYD+ +GRSR F FV + ++
Sbjct: 187 PSDSENRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEV 246
Query: 137 NAVIEKLNGTEIGGREIKVNITE-KP 161
N+ I+ LNG ++ GR I+V++ + KP
Sbjct: 247 NSAIQSLNGVDLNGRAIRVSLADSKP 272
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 109/181 (60%), Gaps = 5/181 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D+ L ++ + G VE EVIYDK TGRSR F FV M + E A ++
Sbjct: 100 KIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQ 159
Query: 143 LNGTEIGGREIKVNITEKPLVQ----VDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI GR ++VN P + D S Q +DS +VYVGNLA +V +
Sbjct: 160 FNGYEIDGRALRVNSGPAPPKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLAWSVDQQQ 219
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L+ FSE+G+V+ AKV+ + +S GFGFVT+SS ++ AI SL+ L G+ IRV+
Sbjct: 220 LETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAIRVSP 279
Query: 258 A 258
A
Sbjct: 280 A 280
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ ++D +L + E G V A+V+YD+ +GRSR F FV + ++ N IE
Sbjct: 205 RVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIES 264
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++GGR I+V+ E
Sbjct: 265 LDGVDLGGRAIRVSPAE 281
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V++E P E A+ +++GN+P ++D+++L I G VE AEVIY++ T R
Sbjct: 36 VSDEGGVEGGQGFSEPPEEAK-LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR 94
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP 181
SR F FV M TVE+A +E LNG ++ GR++ VN S +A +F S
Sbjct: 95 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP-----RGSPERAPRGDFEPS- 148
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+VYVGNL V + L++ FSE G+V+SA+V+ T +S GFGFVT SSE + AI+
Sbjct: 149 CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIA 208
Query: 242 SLNNSLLEGQRIRVNKA 258
+L+ L+G+ +RVN A
Sbjct: 209 ALDGQTLDGRAVRVNVA 225
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+P ++D L ++ EHG V A V+ D+ TGRSR F FV M + + N I
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR ++VN+ E+
Sbjct: 210 LDGQTLDGRAVRVNVAEE 227
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 3/176 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+D+ EL + G VE EVIYDK TGRSR F FV M +VE+ A ++
Sbjct: 39 KIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAAQQ 98
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
N E+ GR ++V TE + L +++E +F S +V+VGNL+ V + LK F
Sbjct: 99 FNNYELDGRTLRV--TEDSHKDMTLPRVESECDSF-GSSNRVHVGNLSWKVDDDALKTLF 155
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G V+ AKV+ T +S GFGFVT++S + AI SL+ L G+ IRV A
Sbjct: 156 SETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIESLDGVDLNGRSIRVTAA 211
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RV++GN+ +D+D L + E G V +A+VIYD+ TGRSR F FV + + N IE
Sbjct: 136 RVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIES 195
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR I+V E
Sbjct: 196 LDGVDLNGRSIRVTAAE 212
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V++E P E A+ +++GN+P ++D+++L I G VE AEVIY++ T R
Sbjct: 29 VSDEGGVEGGQGFSEPPEEAK-LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR 87
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP 181
SR F FV M TVE+A +E LNG ++ GR++ VN S +A +F S
Sbjct: 88 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP-----RGSPERAPRGDFEPS- 141
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+VYVGNL V + L++ FSE G+V+SA+V+ T +S GFGFVT SSE + AI+
Sbjct: 142 CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIA 201
Query: 242 SLNNSLLEGQRIRVNKA 258
+L+ L+G+ +RVN A
Sbjct: 202 ALDGQTLDGRAVRVNVA 218
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+P ++D L ++ EHG V A V+ D+ TGRSR F FV M + + N I
Sbjct: 143 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 202
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR ++VN+ E+
Sbjct: 203 LDGQTLDGRAVRVNVAEE 220
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 113/182 (62%), Gaps = 6/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ VY+GN+P +ID++ L ++ ++ G VE +EVIY++ T +SR F FV M T+E+A
Sbjct: 113 PPEEAK-VYVGNLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEA 171
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+E + ++GGR + VN +V+ +F S +++YVGNL V
Sbjct: 172 EKAVEMFHRYDVGGRLLTVNKAAPRGARVERPA-----RDFGGSSFRIYVGNLPWQVDDS 226
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L + FSE G+V+ A+V+ T +S GFGFVT +S+E+ + AI++L+ LEG+ +RVN
Sbjct: 227 RLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 286
Query: 257 KA 258
A
Sbjct: 287 VA 288
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P +D+ L ++ EHG V A V+YD+ TGRSR F FV M + E+ + I
Sbjct: 213 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAA 272
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR ++VN+ E+
Sbjct: 273 LDGQSLEGRALRVNVAEE 290
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 106/165 (64%), Gaps = 3/165 (1%)
Query: 97 ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156
+LT+I E G V EV+YD+ T RSR FAFV M +V+DA I +G+++GGR ++VN
Sbjct: 5 QLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVN 64
Query: 157 ITEKPLVQVDLSL---LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKV 213
E P L + ++ + +FVDS +K+Y GNL V+S+ LK F+E+ ++SAKV
Sbjct: 65 FPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKV 124
Query: 214 LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ + +S GFGFVTF + +D EAA+ ++N ++G+ +R+N A
Sbjct: 125 IYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 169
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
+ ++Y GN+ + + +L + E + A+VIY++ +GRSR F FV +T +D A +
Sbjct: 92 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 151
Query: 141 EKLNGTEIGGREIKVNI 157
+ +NG E+ GRE+++N+
Sbjct: 152 KTMNGVEVQGRELRLNL 168
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
+TS L + F E G V+S +V+ T +S GF FVT S +DA+ AI + S + G+
Sbjct: 1 MTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRI 60
Query: 253 IRVN 256
+RVN
Sbjct: 61 VRVN 64
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D+ L + + G VE EVIYDK +GRSR F FV M T E+ A ++
Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPY 182
NG EI GR I+VN P + + S N VDS
Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 208
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
+VYVGNL+ V LK+ FSE+G V+ AKV+ + +S GFGFVT+SS ++ AI S
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+ IRV+ A
Sbjct: 269 LNGIDLDGRSIRVSAA 284
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268
Query: 143 LNGTEIGGREIKVNITEK 160
LNG ++ GR I+V+ E+
Sbjct: 269 LNGIDLDGRSIRVSAAEE 286
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 108/181 (59%), Gaps = 5/181 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P +D+ +L + ++ G+VE EV+YD+ TGRSR F FV M T E+ +A +E+
Sbjct: 85 KLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQ 144
Query: 143 LNGTEIGGREIKVNITEKP-----LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG GR ++VN P + + DS K+YVGNL+ V +
Sbjct: 145 FNGYTFQGRPLRVNSGPPPPRDEFAPRTPRGMGGGGGGGSFDSGNKLYVGNLSWGVDNST 204
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L+ FSE+G+VL AKV+ + +S GFGFVT+ S ++ AIS+L+ L+G++IRV
Sbjct: 205 LENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 264
Query: 258 A 258
A
Sbjct: 265 A 265
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+ +DN L + E G V A+VIYD+ +GRSR F FV + ++ N I
Sbjct: 190 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 249
Query: 143 LNGTEIGGREIKVNITE-KP 161
L+G ++ GR+I+V + E KP
Sbjct: 250 LDGVDLDGRQIRVTVAESKP 269
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+++GN+P ++EL ++ E G V+ A++IYDK T RSR FAFV M T E+A I+
Sbjct: 111 RLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTMATAEEAAKAIQM 170
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+G +GGR +VN E P ++ A D YK+Y GNL V ++ L+ F
Sbjct: 171 FDGALLGGRTARVNYPEVPRGGERRTVTMA-GRRRDDGTYKIYAGNLGWGVRADTLRNVF 229
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ +L A+V+ T +S GFGFV+F + EDA+AA+ +L+ LEG+ +R++ A
Sbjct: 230 EGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSLA 285
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+ + D L + + + A VI+++ TGRSR F FV +T EDA A +E
Sbjct: 210 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEA 269
Query: 143 LNGTEIGGREIKVNITEK 160
L+G E+ GR +++++ E+
Sbjct: 270 LDGVELEGRPLRLSLAEQ 287
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 127/241 (52%), Gaps = 13/241 (5%)
Query: 30 QPILQIRFPKLSYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFAR--RVYIG 87
+P+ FP L L A L AVA + + + ++ EF+ RV++G
Sbjct: 24 KPVPSAFFPSKLPQLRALAAAGWRQPLAPL-AVALSSDVETDDAEESAGEFSEDLRVFVG 82
Query: 88 NIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTE 147
N+P ++D+ +L + ++ G+VE EVIYDK TGRSR F FV M TVE+ +E+LNG
Sbjct: 83 NLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVEQLNGYV 142
Query: 148 IGGREIKVNITEKPLV----------QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ GR IKVN P Q Q +VYVGNL+ V
Sbjct: 143 LDGRTIKVNSGPPPPRDQSSPRGFREQSSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSA 202
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L F+E+G VL A+V+ + +S GFGFVT+ S E+ E A+S+L+ + L+G++IRV
Sbjct: 203 LANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEVEKAVSNLDGTDLDGRQIRVTV 262
Query: 258 A 258
A
Sbjct: 263 A 263
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS RVY+GN+ N+D+ L + E G+V A VIYD+ +GRSR F FV + E+
Sbjct: 182 PSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEV 241
Query: 137 NAVIEKLNGTEIGGREIKVNITE 159
+ L+GT++ GR+I+V + E
Sbjct: 242 EKAVSNLDGTDLDGRQIRVTVAE 264
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 113/182 (62%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ VY+GN+P ++D++ L ++ + G VE AEVIY++ +G+SR F FV M T+E+A
Sbjct: 101 PPEEAK-VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 159
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ IE N +I GR + VN + +V+ Q F S ++ YVGNL
Sbjct: 160 DKAIETFNRYDISGRLLNVNRAAQRGSRVERPPRQ-----FASS-FRAYVGNLPWQAEDS 213
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L + FSE G+V++A ++ T +S GFGFVT +S+ED ++AIS+L+ ++G+ +RVN
Sbjct: 214 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 273
Query: 257 KA 258
A
Sbjct: 274 VA 275
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 112/182 (61%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ VY+GN+P ++D++ L ++ + G VE AEVIY+K +G+SR F FV M T+E+A
Sbjct: 101 PPEEAK-VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEA 159
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ IE N I GR + VN + +V+ Q F S ++ YVGNL
Sbjct: 160 DKAIETFNRYNISGRLLNVNRAAQRGSRVERPPRQ-----FASS-FRAYVGNLPWQAEDS 213
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L + FSE G+V++A ++ T +S GFGFVT +S+ED ++AIS+L+ ++G+ +RVN
Sbjct: 214 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 273
Query: 257 KA 258
A
Sbjct: 274 VA 275
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 115/179 (64%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+P ++ + EL ++ +E G V AEVI D+ T RSR F FV M++VE+A I
Sbjct: 117 KLYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRM 176
Query: 143 LNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG+++GGR ++VN E P +V +++ F+DS +K+Y GNL +TSE L
Sbjct: 177 FNGSQVGGRTLRVNFPEVPRGGEREVMEPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLG 236
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ + +LSAKV+ T +S GFGFV+F S E+AEAA+ ++N ++G+ +R+N A
Sbjct: 237 DAFANQPGLLSAKVIYERDTGRSRGFGFVSFDSAENAEAALEAMNGEEVDGRPLRLNLA 295
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P ELT + E G+V+ ++IYDK T RSR FAFV M T E+A ++
Sbjct: 122 RIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQM 181
Query: 143 LNGTEIGGREIKVNITEKP---------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
NG +GGR I+VN E P SL +D YKVY GNL V
Sbjct: 182 FNGALLGGRTIRVNFPEVPRGGERAVASAAAAKTSLRVVDDGT-----YKVYAGNLGWGV 236
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
++ LK F + +L ++V+ T +S GFGFV+F + EDA AAI +++ L+G+ +
Sbjct: 237 RADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQAMDGVELDGRPL 296
Query: 254 RVNKA 258
R++ A
Sbjct: 297 RLSLA 301
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY GN+ + D L + + + VI+++ TGRSR F FV +T+EDANA I+
Sbjct: 226 KVYAGNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQA 285
Query: 143 LNGTEIGGREIKVNITEK 160
++G E+ GR +++++ +
Sbjct: 286 MDGVELDGRPLRLSLASQ 303
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++YVGNL T T+ L FSE G V +++ T +S GF FVT ++ E+A A+
Sbjct: 120 PGRIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAV 179
Query: 241 SSLNNSLLEGQRIRVN 256
N +LL G+ IRVN
Sbjct: 180 QMFNGALLGGRTIRVN 195
>gi|296089370|emb|CBI39142.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 106/165 (64%), Gaps = 3/165 (1%)
Query: 97 ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156
+L + E G+V E++YD+ T RSR FAFV M +V++A I +G+++GGR +KVN
Sbjct: 5 QLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTVKVN 64
Query: 157 ITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKV 213
E P V +++ FVDSPYK+Y GNL+ +TSE L+ F++ +L AKV
Sbjct: 65 FPEVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKV 124
Query: 214 LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ + +S GFGF++F+S E+AE+A++++N +EG+ +R+N A
Sbjct: 125 IYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPLRLNLA 169
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
SS VD+P ++Y GN+ + ++ L +H + A+VIY++ +GRSR F F
Sbjct: 83 SSYRGFVDSPY----KIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGF 138
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158
+ + E+A + + +N E+ GR +++N+
Sbjct: 139 LSFASAENAESALNAMNEVEVEGRPLRLNLA 169
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
+TS L F+E G V+S +++ T +S GF FVT S ++A+ AI + S + G+
Sbjct: 1 MTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRT 60
Query: 253 IRVN 256
++VN
Sbjct: 61 VKVN 64
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 111/182 (60%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ VY+GN+P ++D++ L ++ + G VE AEVIY++ +G+SR F FV M T+E+A
Sbjct: 104 PPEEAK-VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 162
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ IE N +I GR + VN + +V+ Q S ++ YVGNL
Sbjct: 163 DKAIEMFNRYDISGRLLNVNRAAQRGSRVERPPRQ------FASAFRAYVGNLPWQAEDS 216
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L + FSE G+VL+A V+ T +S GFGFVT +S+E+ + AIS+L+ L+G+ +RVN
Sbjct: 217 RLVQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKEELDDAISALDGQELDGRPLRVN 276
Query: 257 KA 258
A
Sbjct: 277 VA 278
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 117/198 (59%), Gaps = 15/198 (7%)
Query: 75 DTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
DTPS +R+++GN+P ++D+ +L +I + G VE EVIYDK TGRSR F FV M +
Sbjct: 76 DTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSA 135
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF-------------VDS 180
+ A ++LNG + GRE++VN P + + S E+ F D
Sbjct: 136 AEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRF-GENPRFGGDRPRGPPRGGSSDG 194
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
+V+VGNLA V + L+ F E+GQVL AKV+ + +S GFGFVTFSS ++ ++AI
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 241 SSLNNSLLEGQRIRVNKA 258
+L+ + L G+ IRV+ A
Sbjct: 255 RTLDGADLNGRAIRVSPA 272
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 123/204 (60%), Gaps = 15/204 (7%)
Query: 63 AEETASSSSSSVDT--------PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI 114
AE+ A +S++V+ P E A+ VY+GN+P ++D++ L ++ ++ G VE AEVI
Sbjct: 90 AEDDAVEASAAVEDEEVGEYVEPPEEAK-VYVGNLPYDVDSERLAQLFEQAGVVEVAEVI 148
Query: 115 YDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAED 174
Y++ T RSR F FV M TVE+A+ +E L+ ++ GR + VN +VD Q+
Sbjct: 149 YNRETDRSRGFGFVTMSTVEEADKAVEMLHRYDVNGRLLTVNKAAPRGSRVDRPPRQSGP 208
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
S ++YVGNL V L + FSE G+V+ A+V+ T +S GFGFVT ++++
Sbjct: 209 S------LRIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQD 262
Query: 235 DAEAAISSLNNSLLEGQRIRVNKA 258
+ + AI++L+ L+G+ +RVN A
Sbjct: 263 ELDDAIAALDGQSLDGRALRVNVA 286
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTP---SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK 110
D RL V A+ S VD P S + R+Y+GN+P +D+ +L ++ EHG V
Sbjct: 181 DVNGRLLTV--NKAAPRGSRVDRPPRQSGPSLRIYVGNLPWQVDDSKLVQMFSEHGKVVD 238
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
A V+YD+ TGRSR F FV M T ++ + I L+G + GR ++VN+ E+
Sbjct: 239 ARVVYDRETGRSRGFGFVTMATQDELDDAIAALDGQSLDGRALRVNVAEE 288
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 112/182 (61%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ VY+GN+P ++D++ L ++ + G VE AEVIY++ +G+SR F FV M T+E+A
Sbjct: 101 PPEEAK-VYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEA 159
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ IE N +I GR + VN + S ++ F S ++ YVGNL
Sbjct: 160 DKAIETFNRYDISGRLLNVNRAAQ-----RGSRVERPPRRFASS-FRAYVGNLPWQAEDS 213
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L + FSE G+V++A ++ T +S GFGFVT +S+ED ++AIS+L+ ++G+ +RVN
Sbjct: 214 RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 273
Query: 257 KA 258
A
Sbjct: 274 VA 275
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 112/182 (61%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ +++GN+P ++D+ L + ++ G VE +EVIY++ T +SR F FV M TVE+A
Sbjct: 109 PPEEAK-LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+EK N E+ GR + VNI + + Q D+ +++YVGNL V ++
Sbjct: 168 KKAVEKFNRYEVNGRLLTVNIAAPRGSRPERQPRQ------YDAAFRIYVGNLPWDVDND 221
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G+V+ A+V+ T +S GFGFVT S+E + AI++L+ LEG+ I+VN
Sbjct: 222 RLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAALDGQNLEGRAIKVN 281
Query: 257 KA 258
A
Sbjct: 282 VA 283
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A R+Y+GN+P ++DND L ++ EHG V A V+YD+ TGRSR F FV M + N I
Sbjct: 206 AFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAI 265
Query: 141 EKLNGTEIGGREIKVNITEK 160
L+G + GR IKVN+ E+
Sbjct: 266 AALDGQNLEGRAIKVNVAEE 285
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
++V+ P E +VY+GN+P ++D++ L +I + G VE AEVIY++ TG+SR F FV M
Sbjct: 100 AAVEPPEE--AKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMS 157
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
TVE+A+ IE N +I GR + VN +++ Q F + ++ YVGNL
Sbjct: 158 TVEEADKAIEMFNRYDISGRLLNVNRASSRGTRMERPQRQ-----FAPA-FRAYVGNLPW 211
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
V L + FSE G+V+ AKV+ T +S GFGFV+ S+E+ AIS+L+ L+G+
Sbjct: 212 QVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGR 271
Query: 252 RIRVNKA 258
+RVN A
Sbjct: 272 PLRVNVA 278
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPS-EFAR--RVYIGNIPRNIDNDELTKIVQEHGAVEK 110
D + RL V ASS + ++ P +FA R Y+GN+P +D+ L ++ EHG V
Sbjct: 173 DISGRLLNV--NRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVD 230
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP 161
A+V+YD+ TGRSR F FV M + E+ N I L+G E+ GR ++VN+ E+P
Sbjct: 231 AKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAERP 282
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 112/189 (59%), Gaps = 13/189 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +V + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQ 151
Query: 143 LNGTEIGGREIKVNITEKPLVQVD-------------LSLLQAEDSNFVDSPYKVYVGNL 189
NG E+ GR ++VN P + D S + S +VYVGNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ V L+ F+E+G+V+ A+V+ + +S GFGFVT++S ++ + AI+SLN + L+
Sbjct: 212 SWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINSLNGADLD 271
Query: 250 GQRIRVNKA 258
G++IRV++A
Sbjct: 272 GRQIRVSEA 280
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L + E G V +A VIYD+ +GRS+ F FV + ++ I
Sbjct: 205 RVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINS 264
Query: 143 LNGTEIGGREIKVNITE 159
LNG ++ GR+I+V+ E
Sbjct: 265 LNGADLDGRQIRVSEAE 281
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 110/176 (62%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+P ++D++ L ++ ++ G VE AEVIY++ TG+SR F FV M T+E+A+ IE
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
LN +I GR + VN +V+ Q + ++ YVGNL V L + F
Sbjct: 188 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPA------FRAYVGNLPWQVDDSRLLQLF 241
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V++A V+ + +S GFGFV+ +S+E+ + AIS+L+ L+G+ +RVN A
Sbjct: 242 SEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 297
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 110/176 (62%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+P ++D++ L ++ ++ G VE AEVIY++ TG+SR F FV M T+E+A+ IE
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
LN +I GR + VN +V+ Q + ++ YVGNL V L + F
Sbjct: 189 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPA------FRAYVGNLPWQVDDSRLLQLF 242
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V++A V+ + +S GFGFV+ +S+E+ + AIS+L+ L+G+ +RVN A
Sbjct: 243 SEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 298
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 90/132 (68%), Gaps = 9/132 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+P + D+ L I+Q +G+ E EV+YD+ TGRSR FAFV M +VED NAVIE
Sbjct: 67 KLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVEDCNAVIEN 126
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G+E GGR ++VN ++KP ++ L + ++ YK++VGNL+ +VTSE L + F
Sbjct: 127 LDGSEYGGRTLRVNFSDKPKPKLPL---------YPETEYKLFVGNLSWSVTSESLNQVF 177
Query: 203 SEKGQVLSAKVL 214
E G V+ A+VL
Sbjct: 178 QEYGNVIGARVL 189
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K+Y GNL + S L G +VL T +S GF FVT SS ED A I +
Sbjct: 67 KLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVEDCNAVIEN 126
Query: 243 LNNSLLEGQRIRVN 256
L+ S G+ +RVN
Sbjct: 127 LDGSEYGGRTLRVN 140
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 8/187 (4%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
++V+ P E +VY+GN+P +ID++ L ++ + G VE AEVIY++ TG+SR F FV M
Sbjct: 106 AAVEPPEE--AKVYVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRETGQSRGFGFVTMS 163
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
T+E+A+ IE N +I GR + VN +++ Q F + ++ YVGNL
Sbjct: 164 TIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMERPPRQ-----FAPA-FRAYVGNLPW 217
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
V L + FSE G+V++A V+ + +S GFGFVT S+E+ + AIS+L+ L+G+
Sbjct: 218 QVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDAISALDGQELDGR 277
Query: 252 RIRVNKA 258
+RVN A
Sbjct: 278 PLRVNVA 284
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 117/198 (59%), Gaps = 15/198 (7%)
Query: 75 DTPSEFA-RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
DTPS +R+++G++P ++D+ +L +I + G VE EVIYDK TGRSR F FV M +
Sbjct: 76 DTPSYSPNQRLFVGSLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSA 135
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF-------------VDS 180
+ A ++LNG + GRE++VN P + + S E+ F D
Sbjct: 136 AEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRF-GENPRFGGDRPRGPPRGGSSDG 194
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
+V+VGNLA V + L+ F E+GQVL AKV+ + +S GFGFVTFSS ++ ++AI
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI 254
Query: 241 SSLNNSLLEGQRIRVNKA 258
+L+ + L G+ IRV+ A
Sbjct: 255 RTLDGADLNGRAIRVSPA 272
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
gi|12230623|sp|Q9ZUU4.1|ROC1_ARATH RecName: Full=Ribonucleoprotein At2g37220, chloroplastic; Flags:
Precursor
gi|13877809|gb|AAK43982.1|AF370167_1 putative RNA-binding protein [Arabidopsis thaliana]
gi|4056477|gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|15081717|gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
gi|16323482|gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197716|gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254275|gb|AEC09369.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 13/189 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +V + A ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 143 LNGTEIGGREIKVNITEKPLVQVD-------------LSLLQAEDSNFVDSPYKVYVGNL 189
NG E+ GR ++VN P + D S + S +VYVGNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ V L+ FSE+G+V+ A+V+ + +S GFGFVT+ S ++ + AI SL+ + L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 250 GQRIRVNKA 258
G++IRV++A
Sbjct: 272 GRQIRVSEA 280
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L + E G V +A VIYD+ +GRS+ F FV + ++ I+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR+I+V+ E
Sbjct: 265 LDGADLDGRQIRVSEAE 281
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 13/189 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +V + A ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 143 LNGTEIGGREIKVNITEKPLVQVD-------------LSLLQAEDSNFVDSPYKVYVGNL 189
NG E+ GR ++VN P + D S + S +VYVGNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ V L+ FSE+G+V+ A+V+ + +S GFGFVT+ S ++ + AI SL+ + L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 250 GQRIRVNKA 258
G++IRV++A
Sbjct: 272 GRQIRVSEA 280
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L + E G V +A VIYD+ +GRS+ F FV + ++ I+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR+I+V+ E
Sbjct: 265 LDGADLDGRQIRVSEAE 281
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
V+ P E +VY+GN+P ++D++ L ++ ++ G VE +EVIY++ T +SR F FV M T+
Sbjct: 110 VEPPEEA--KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTI 167
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
E+A +E + ++ GR + VN +V+ DS S +++YVGNL V
Sbjct: 168 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERP---PRDSG---SSFRIYVGNLPWQV 221
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
L + FSE G+V+ AKV+ T +S GFGFVT +S+E+ + AI++L+ LEG+ +
Sbjct: 222 DDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 281
Query: 254 RVNKA 258
RVN A
Sbjct: 282 RVNVA 286
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D+ S F R+Y+GN+P +D+ L ++ EHG V A+V+YD+ TGRSR F FV M + E
Sbjct: 205 DSGSSF--RIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQE 262
Query: 135 DANAVIEKLNGTEIGGREIKVNITEK 160
+ + I L+G + GR ++VN+ E+
Sbjct: 263 ELDDAIAALDGQSLEGRALRVNVAEE 288
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P ELT E G+V+ ++IYDK T RSR FAFV M T E+A ++
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQM 168
Query: 143 LNGTEIGGREIKVNITEKP--------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
NG +GGR ++VN E P V + L+ D D YKVY GNL V
Sbjct: 169 FNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVD----DGTYKVYAGNLGWGVR 224
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
++ LK F + ++ A+V+ T +S GFGFV+F + +DA+AA+ +++ L+G+ +R
Sbjct: 225 ADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLR 284
Query: 255 VNKA 258
++ A
Sbjct: 285 LSLA 288
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++YVGNL T T+ L FSE G V +++ T +S GF FVT ++ E+A A+
Sbjct: 107 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAV 166
Query: 241 SSLNNSLLEGQRIRVN 256
N +LL G+ +RVN
Sbjct: 167 QMFNGALLGGRTVRVN 182
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY GN+ + D L + + A VI+++ TGRSR F FV T++DA A ++
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 143 LNGTEIGGREIKVNITEK 160
++G E+ GR +++++ +
Sbjct: 273 MDGVELDGRPLRLSLAAQ 290
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P ELT E G+V+ ++IYDK T RSR FAFV M T E+A ++
Sbjct: 109 RIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAVQM 168
Query: 143 LNGTEIGGREIKVNITEKP--------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
NG +GGR ++VN E P V + L+ D D YKVY GNL V
Sbjct: 169 FNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVD----DGTYKVYAGNLGWGVR 224
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
++ LK F + ++ A+V+ T +S GFGFV+F + +DA+AA+ +++ L+G+ +R
Sbjct: 225 ADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLR 284
Query: 255 VNKA 258
++ A
Sbjct: 285 LSLA 288
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++YVGNL T T+ L FSE G V +++ T +S GF FVT ++ E+A A+
Sbjct: 107 PGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTMATAEEAAKAV 166
Query: 241 SSLNNSLLEGQRIRVN 256
N +LL G+ +RVN
Sbjct: 167 QMFNGALLGGRTVRVN 182
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY GN+ + D L + + A VI+++ TGRSR F FV T++DA A ++
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 143 LNGTEIGGREIKVNITEK 160
++G E+ GR +++++ +
Sbjct: 273 MDGVELDGRPLRLSLAAQ 290
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ +++GN+P ++D+++L +I + G VE AEVIY++ T RSR F FV M TVE+A
Sbjct: 107 PPEDAK-LFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEA 165
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+E + E+ GR + VN + + + + E S ++VYVGNL V
Sbjct: 166 EKAVELYHKFEVNGRFLTVNKAAPRGSRPERAPREYEPS------FRVYVGNLPWDVDDA 219
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G+VLSA+V+ T +S GF FVT +SE + AI +L+ LEG+ IRVN
Sbjct: 220 RLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGALDGQTLEGRAIRVN 279
Query: 257 KA 258
A
Sbjct: 280 VA 281
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 60 FAVAEETASSSSSSVDTPSEF--ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK 117
F + A S P E+ + RVY+GN+P ++D+ L ++ EHG V A V+ D+
Sbjct: 181 FLTVNKAAPRGSRPERAPREYEPSFRVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDR 240
Query: 118 YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
TGRSR FAFV M + + N I L+G + GR I+VN+ E+
Sbjct: 241 ETGRSRGFAFVTMASESEMNEAIGALDGQTLEGRAIRVNVAEE 283
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
V+ P E +VY+GN+P +ID++ L ++ ++ G VE +EVIY++ T RSR F FV M TV
Sbjct: 137 VEPPEEA--KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTV 194
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
E+A +E + ++ GR + VN +V+ Q S +++YVGNL V
Sbjct: 195 EEAEKAVEMFHRYDVDGRLLTVNKAAPRGARVERPPRQFGPS------FRIYVGNLPWQV 248
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
L + FSE G+V+ A+V+ T +S GFGFVT +++E+ + AI++L+ L+G+ +
Sbjct: 249 DDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRAL 308
Query: 254 RVNKA 258
RVN A
Sbjct: 309 RVNVA 313
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P +D+ L ++ EHG V A V+YD+ TGRSR F FV M T E+ + I
Sbjct: 238 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 297
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR ++VN+ E+
Sbjct: 298 LDGQSLDGRALRVNVAEE 315
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
++V+ P E +VY+GN+P ++D++ L +I + G VE AEVIY++ TG+SR F FV M
Sbjct: 100 AAVEPPEE--AKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMS 157
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
TVE+A+ IE + +I GR + VN +++ Q F + ++ YVGNL
Sbjct: 158 TVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERPQRQ-----FAPA-FRAYVGNLPW 211
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
V L + FSE G+V+ AKV+ T +S GFGFV+ S+E+ AIS+L+ L+G+
Sbjct: 212 QVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGR 271
Query: 252 RIRVNKA 258
+RVN A
Sbjct: 272 PLRVNVA 278
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPS-EFAR--RVYIGNIPRNIDNDELTKIVQEHGAVEK 110
D + RL V ASS + ++ P +FA R Y+GN+P +D+ L ++ EHG V
Sbjct: 173 DISGRLLNV--NRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVD 230
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP 161
A+V+YD+ TGRSR F FV M + E+ N I L+G E+ GR ++VN+ E+P
Sbjct: 231 AKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAERP 282
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY-KVYVGNLAKTVTSEMLKKC 201
NG E+ GR ++VN P + + S +VYVGNLA V + L+
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETL 207
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FSE+G+V+ AKV+ + +S GFGFVT+SS E+ AI SL+ L G+ IRV+ A
Sbjct: 208 FSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR I+V+ E
Sbjct: 249 LDGVDLNGRAIRVSPAE 265
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
V+ P E +VY+GN+P ++D++ L ++ ++ G VE +EVIY++ T +SR F FV M T+
Sbjct: 110 VEPPEE--AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTI 167
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
E+A +E + ++ GR + VN +V+ DS S +++YVGNL V
Sbjct: 168 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERP---PRDSG---SSFRIYVGNLPWQV 221
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
L + FSE G+V+ A+V+ T +S GFGFVT +S+E+ + AI++L+ LEG+ +
Sbjct: 222 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 281
Query: 254 RVNKA 258
RVN A
Sbjct: 282 RVNVA 286
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D+ S F R+Y+GN+P +D+ L ++ EHG V A V+YD+ TGRSR F FV M + E
Sbjct: 205 DSGSSF--RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 262
Query: 135 DANAVIEKLNGTEIGGREIKVNITEK 160
+ + I L+G + GR ++VN+ E+
Sbjct: 263 ELDDAIAALDGQSLEGRALRVNVAEE 288
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 110/176 (62%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+P ++D++ L ++ ++ G VE AEVIY++ TG+SR F FV M T+E+A+ IE
Sbjct: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
LN +I GR + VN +V+ Q + ++ YVGNL V L + F
Sbjct: 77 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPA------FRAYVGNLPWQVDDSRLLQLF 130
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V++A V+ + +S GFGFV+ +S+E+ + AIS+L+ L+G+ +RVN A
Sbjct: 131 SEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 186
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 73 SVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT 132
S P E A+ V++GN+P ++D++ L ++ ++ G VE AEVIY++ T RSR F FV M T
Sbjct: 119 SYSEPPEEAK-VFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMST 177
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAK 191
VE+A ++ + E+ GR + VN + Q E V P +++YVGNL
Sbjct: 178 VEEAEKAVDMFHRYELDGRLLTVN-------KAAPRGSQPERPPRVFEPAFRMYVGNLPW 230
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
V S L++ FSE G+V+ A+V+ T +S GFGFVT SS+ + E AI++ + L+G+
Sbjct: 231 DVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGR 290
Query: 252 RIRVNKA 258
IRVN A
Sbjct: 291 TIRVNVA 297
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A R+Y+GN+P ++D+ L ++ EHG V +A V++D+ TGRSR F FV M + +
Sbjct: 218 EPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELED 277
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I +G + GR I+VN+ E+
Sbjct: 278 AIAATDGQTLDGRTIRVNVAEE 299
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
++V+ P E +VY+GN+P +I+++ L ++ + G VE AEVIY+K TG+SR F FV M
Sbjct: 103 AAVEPPEE--AKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMS 160
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
T+E+A+ IE N +I GR + VN +++ Q F + ++ YVGNL
Sbjct: 161 TIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMERPPRQ-----FAPA-FRAYVGNLPW 214
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
L + FSE G+V++A V+ T +S GFGFVT S+E+ + AIS+L+ L+G+
Sbjct: 215 QADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQELDGR 274
Query: 252 RIRVNKA 258
+RVN A
Sbjct: 275 PLRVNVA 281
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 110/186 (59%), Gaps = 15/186 (8%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ +++GN+P ++D+ L + ++ G VE +EVIY++ T +SR F FV M TVE+A
Sbjct: 109 PPEEAK-LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 137 NAVIEKLNGTEIGGREIKVNIT----EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
+EK N E+ GR + VN +P Q + D+ +++YVGNL
Sbjct: 168 EKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRV----------YDAAFRIYVGNLPWD 217
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
V S L++ FSE G+V+ A+V+ T +S GFGFV S+E + AI++L+ LEG+
Sbjct: 218 VDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRA 277
Query: 253 IRVNKA 258
I+VN A
Sbjct: 278 IKVNVA 283
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A R+Y+GN+P ++D+ L ++ EHG V A V+ D+ TGRSR F FV M + N I
Sbjct: 206 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Query: 141 EKLNGTEIGGREIKVNITEK 160
L+G + GR IKVN+ E+
Sbjct: 266 AALDGQNLEGRAIKVNVAEE 285
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 112/189 (59%), Gaps = 7/189 (3%)
Query: 70 SSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVM 129
S + P E A+ +++GN+P +ID+++L ++ E G VE AEVIY++ T +SR F F+
Sbjct: 82 SEDTYSEPPEEAK-LFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFIT 140
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
M TVE+A +E N ++ GR + VN P QA + +F ++YVGNL
Sbjct: 141 MSTVEEAEKAVEMFNRYDLNGRFLTVN-KAAPRGSRPERPPQAFEPSF-----RIYVGNL 194
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
V L++ FSE G+V+ A+V+ T +S GFGFVT SSE + AI++L+ L+
Sbjct: 195 PWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLD 254
Query: 250 GQRIRVNKA 258
G+ IRVN A
Sbjct: 255 GRAIRVNVA 263
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P +D+ L ++ EHG V A V+YD+ T RSR F FV M + + N I
Sbjct: 188 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 247
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR I+VN+ E+
Sbjct: 248 LDGQSLDGRAIRVNVAEE 265
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 6/173 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+P ++D++ L ++ + G VE AEVIY++ +G+SR F FV M T+E+A+ IE
Sbjct: 4 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 63
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
N +I GR + VN + +V+ Q S ++ YVGNL L + F
Sbjct: 64 FNRYDISGRLLNVNRAAQRGSRVERPPRQ------FASSFRAYVGNLPWQAEDSRLVQLF 117
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
SE G+V++A V+ T +S GFGFVT +S+ED ++AIS+L+ ++G+ +RV
Sbjct: 118 SEHGEVVNATVVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 170
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL V SE L + F + G V A+V+ + +S GFGFVT S+ E+A+ AI +
Sbjct: 4 KVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIET 63
Query: 243 LNNSLLEGQRIRVNKA 258
N + G+ + VN+A
Sbjct: 64 FNRYDISGRLLNVNRA 79
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
++V+ P E +VY+GN+P +I+++ L ++ + G VE AEVIY+K TG+SR F FV M
Sbjct: 103 AAVEPPEE--AKVYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQSRGFGFVTMS 160
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
T+E+A+ IE N +I GR + VN +++ Q F + ++ YVGNL
Sbjct: 161 TIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMERPPRQ-----FAPA-FRAYVGNLPW 214
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
L + FSE G+V++A V+ T +S GFGFVT S+E+ + AIS+L+ L+G+
Sbjct: 215 QADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDAISALDGQELDGR 274
Query: 252 RIRVNKA 258
+RVN A
Sbjct: 275 PLRVNVA 281
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 73 SVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT 132
S P E A+ V++GN+P ++D++ L ++ ++ G VE AEVIY++ T RSR F FV M T
Sbjct: 140 SYSEPPEEAK-VFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMST 198
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAK 191
VE+A ++ + E+ GR + VN + Q E V P +++YVGNL
Sbjct: 199 VEEAEKAVDMFHRYELDGRLLTVN-------KAAPRGSQPERPPRVFEPAFRMYVGNLPW 251
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
V S L++ FSE G+V+ A+V+ T +S GFGFVT SS+ + E AI++ + L+G+
Sbjct: 252 DVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGR 311
Query: 252 RIRVNKA 258
IRVN A
Sbjct: 312 TIRVNVA 318
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A R+Y+GN+P ++D+ L ++ EHG V +A V++D+ TGRSR F FV M + +
Sbjct: 239 EPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELED 298
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I +G + GR I+VN+ E+
Sbjct: 299 AIAATDGQTLDGRTIRVNVAEE 320
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 3/176 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P +ID++ L + + G VE AEVIY++ T RSR F FV M T+E+ +E
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+G E+ GR + VN Q + S +VYVGNL V L++ F
Sbjct: 178 FSGYELNGRVLTVNKAAPKGAQPERPPRPPRS---FSSGLRVYVGNLPWEVDDARLEQIF 234
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V A+V+ T +S GFGFVT SSE D AI++L+ L+G+ IRVN A
Sbjct: 235 SEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVA 290
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+P +D+ L +I EHG VE A V+YD+ TGRSR F FV M + D N I
Sbjct: 215 RVYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAA 274
Query: 143 LNGTEIGGREIKVNITE 159
L+G + GR I+VN+ +
Sbjct: 275 LDGQSLDGRAIRVNVAQ 291
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ +++GN+P +ID+++L ++ E G VE AEVIY++ T +SR F F+ M TVE+A
Sbjct: 129 PPEEAK-LFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEA 187
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+E N ++ GR + VN P QA + +F ++YVGNL V
Sbjct: 188 EKAVEMFNRYDLNGRFLTVN-KAAPRGSRPERPPQAFEPSF-----RIYVGNLPWQVDDA 241
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G+V+ A+V+ T +S GFGFVT SSE + AI++L+ L+G+ IRVN
Sbjct: 242 RLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVN 301
Query: 257 KA 258
A
Sbjct: 302 VA 303
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P +D+ L ++ EHG V A V+YD+ T RSR F FV M + + N I
Sbjct: 228 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 287
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR I+VN+ E+
Sbjct: 288 LDGQSLDGRAIRVNVAEE 305
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 19/261 (7%)
Query: 9 SLILSQQNLIFSKTHFTFQSRQPILQIRFPKLSYSLHNLKTASIEDSTTRLFAVAEETAS 68
S+ LS Q L + F +P+ FP L +A L AVA A
Sbjct: 7 SISLSPQFLSLPSSSF-----KPVPSALFPSKIPQHRALASAGWRHPLAPL-AVA--VAV 58
Query: 69 SSSSSVDTPSEFAR--RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
SS + EF+ RV++GN+P ++D+ +L + ++ G+VE EVIYDK TGRSR F
Sbjct: 59 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 118
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP---------LVQVDLSLLQAEDSNF 177
FV M TVE+ +E+LNG + GR +KVN P + Q
Sbjct: 119 FVTMSTVEEVEEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGP 178
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+VYVGNL+ V L F+E+G VL A+V+ + +S GFGFVT+ + ++ +
Sbjct: 179 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQ 238
Query: 238 AAISSLNNSLLEGQRIRVNKA 258
A+S+L+ + ++G++IRV A
Sbjct: 239 KAVSNLDGTDMDGRQIRVTVA 259
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%)
Query: 64 EETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
E++ S PS RVY+GN+ N+D+ L + E G+V A VIYD+ +GRSR
Sbjct: 165 EQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSR 224
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
F FV T ++ + L+GT++ GR+I+V + E
Sbjct: 225 GFGFVTYGTSDEVQKAVSNLDGTDMDGRQIRVTVAE 260
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 113/182 (62%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PSE A+ +++GN+P +ID++ L ++ Q+ G VE AEVIY++ T RSR F FV M TVE+A
Sbjct: 93 PSEDAK-LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEA 151
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ +E + ++ GR + VN + + + + + Y++YVGN+ +
Sbjct: 152 DKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT------YRIYVGNIPWDIDDA 205
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G+V+SA+V+ + +S GFGFVT SSE + AI++L+ L+G+ IRVN
Sbjct: 206 RLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265
Query: 257 KA 258
A
Sbjct: 266 AA 267
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GNIP +ID+ L ++ EHG V A V++D+ +GRSR F FV M + + + I
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR I+VN E+
Sbjct: 252 LDGQTLDGRTIRVNAAEE 269
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 118/207 (57%), Gaps = 7/207 (3%)
Query: 52 IEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKA 111
++D + + A E+ P E A+ VY+GN+P ++D++ L ++ + G VE A
Sbjct: 96 VDDHSVEVSAAVEDEVEEEVGEYVEPPEEAK-VYVGNLPYDVDSERLAQLFDQAGVVEVA 154
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQ 171
EVIY++ T +SR F FV M TVE+A +E + ++ GR + VN +VD Q
Sbjct: 155 EVIYNRETDQSRGFGFVTMSTVEEAEKAVEMFHRYDVNGRLLTVNKAAPRGSRVDRPPRQ 214
Query: 172 AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+ S ++YVGNL V L + FSE G+V+ A+V+ T +S GFGFVT +
Sbjct: 215 SGPS------LRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMA 268
Query: 232 SEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+++ + AI++L+ L+G+ +RVN A
Sbjct: 269 SQDELDDAIAALDGQSLDGRALRVNVA 295
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTP---SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK 110
D RL V A+ S VD P S + R+Y+GN+P +D+ L ++ EHG V
Sbjct: 190 DVNGRLLTV--NKAAPRGSRVDRPPRQSGPSLRIYVGNLPWQVDDSRLVELFSEHGKVVD 247
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
A V+YD+ TGRSR F FV M + ++ + I L+G + GR ++VN+ E+
Sbjct: 248 ARVVYDRETGRSRGFGFVTMASQDELDDAIAALDGQSLDGRALRVNVAEE 297
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
V+ P E +VY+GN+P +ID++ L ++ ++ G VE +EVIY++ T RSR F FV M TV
Sbjct: 1 VEPPEE--AKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTV 58
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
E+A +E + ++ GR + VN +V+ Q S +++YVGNL V
Sbjct: 59 EEAEKAVEMFHRYDVDGRLLTVNKAAPRGARVERPPRQFGPS------FRIYVGNLPWQV 112
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
L + FSE G+V+ A+V+ T +S GFGFVT +++E+ + AI++L+ L+G+ +
Sbjct: 113 DDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRAL 172
Query: 254 RVNKA 258
RVN A
Sbjct: 173 RVNVA 177
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPSEFAR--RVYIGNIPRNIDNDELTKIVQEHGAVEKA 111
D RL V + A + P +F R+Y+GN+P +D+ L ++ EHG V A
Sbjct: 72 DVDGRLLTV-NKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDA 130
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
V+YD+ TGRSR F FV M T E+ + I L+G + GR ++VN+ E+
Sbjct: 131 RVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEE 179
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 114/186 (61%), Gaps = 10/186 (5%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
V+ P E ++++GN+P ++D+++L + ++ G VE AEVIY++ T SR F FV M TV
Sbjct: 143 VEPPEE--AKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTV 200
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAKT 192
E++ +E L+ ++ GR + VN + + E V P Y++YVGNL
Sbjct: 201 EESEKAVEMLHRYDLDGRFLTVN-------KAAPRGSRPERPPRVSEPGYRIYVGNLPWD 253
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
V S L++ FSE G+V+SA+V+ T++S GFGFVT S+E + AI++L+ L+G+
Sbjct: 254 VDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQNLDGRP 313
Query: 253 IRVNKA 258
IRVN A
Sbjct: 314 IRVNVA 319
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE R+Y+GN+P ++D+ L +I EHG V A V++D+ T RSR F FV M T + N
Sbjct: 239 SEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELN 298
Query: 138 AVIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 299 DAIAALDGQNLDGRPIRVNVAEE 321
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 113/191 (59%), Gaps = 16/191 (8%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+P D+ +L +I + +VE +V+YD+ +GRSR FAFV M T E A +VI++
Sbjct: 1 KLYVGNLPWTCDSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSVIDR 60
Query: 143 LNGTEIGGREIKV-------NITEKPLV--------QVDLSLLQAEDSNFVDSPYKVYVG 187
L+G++ GGR +KV N KP + D Q D +D+ K+++G
Sbjct: 61 LDGSDFGGRPLKVSFPQPRENRDNKPRFGNNERGDRRSDRPPRQGSD-RVLDNTNKMFIG 119
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL+ + ++ L + FSE G V+ AKV+ T KS GFGFVT S+ + A+ +L+ +
Sbjct: 120 NLSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLDGAE 179
Query: 248 LEGQRIRVNKA 258
EG+ +RV++A
Sbjct: 180 FEGREMRVSEA 190
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ +++GN+P ++D+ L ++ + G VE AEVIY++ T +SR F FV M TVE+A
Sbjct: 117 PPEEAK-LFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEA 175
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+E N +I GR + VN +VD E + +++YVGNL V
Sbjct: 176 EKAVEMFNRYDINGRLLTVNKAAPRGARVDRPPRAFEPA------FRMYVGNLPWQVDDA 229
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G+V+ A+V+ T +S GFGFVT S++ + + AI++L+ L+G+ IRVN
Sbjct: 230 RLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVN 289
Query: 257 KA 258
A
Sbjct: 290 VA 291
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPS---EFARRVYIGNIPRNIDNDELTKIVQEHGAVEK 110
D RL V A+ + VD P E A R+Y+GN+P +D+ L ++ EHG V +
Sbjct: 186 DINGRLLTV--NKAAPRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVE 243
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
A V+YD+ TGRSR F FV M T + + I L+G + GR I+VN+ E
Sbjct: 244 ARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAE 292
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 73 SVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT 132
S P E A+ V++GN+P ++D++ L ++ ++ G VE AEVIY++ T RSR F FV M T
Sbjct: 935 SYSEPPEEAK-VFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMST 993
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAK 191
VE+A ++ + E+ GR + VN + Q E V P +++YVGNL
Sbjct: 994 VEEAEKAVDMFHRYELDGRLLTVN-------KAAPRGSQPERPPRVFEPAFRMYVGNLPW 1046
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
V S L++ FSE G+V+ A+V+ T +S GFGFVT SS+ + E AI++ + L+G+
Sbjct: 1047 DVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGR 1106
Query: 252 RIRVNKA 258
IRVN A
Sbjct: 1107 TIRVNVA 1113
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A R+Y+GN+P ++D+ L ++ EHG V +A V++D+ TGRSR F FV M + +
Sbjct: 1034 EPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELED 1093
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I +G + GR I+VN+ E+
Sbjct: 1094 AIAATDGQTLDGRTIRVNVAEE 1115
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 113/193 (58%), Gaps = 10/193 (5%)
Query: 75 DTPSEFAR--RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT 132
D PS F+R ++++GN+P ++D+ L ++ + G VE EVIYDK TGRSR F FV M +
Sbjct: 81 DGPS-FSRDLKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSS 139
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKPL------VQVDLSLLQAEDSNFVDSPYKVYV 186
VE+A A ++ NG E+ GR ++VN P S + DS +V+V
Sbjct: 140 VEEAEAAAKQFNGYELDGRSLRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHV 199
Query: 187 GNLAKTVTSEMLKKCFSEKG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
GNLA V L+ F E+G +VL A+V+ + +S GFGFVTF S ++ ++AI SL+
Sbjct: 200 GNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDG 259
Query: 246 SLLEGQRIRVNKA 258
L G+ IRV+ A
Sbjct: 260 VDLNGRAIRVSLA 272
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGA-VEKAEVIYDKYTGRSRRFAFVMMKTVED 135
PS+ RV++GN+ +D+ L + +E G V +A VIYD+ +GRSR F FV + ++
Sbjct: 190 PSDSENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDE 249
Query: 136 ANAVIEKLNGTEIGGREIKVNITE-KP 161
+ I+ L+G ++ GR I+V++ + KP
Sbjct: 250 VKSAIQSLDGVDLNGRAIRVSLADSKP 276
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 111/182 (60%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ VY+GN+P ++D++ L ++ ++ G VE +EVIY++ T +SR F FV M T+E+A
Sbjct: 111 PPEEAK-VYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEA 169
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+E + ++ GR + VN +V+ DS S +++YVGNL V
Sbjct: 170 EKAVEMFHRYDVNGRLLTVNKAAPRGARVERP---PRDSG---SSFRIYVGNLPWQVDDS 223
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L + FSE G+V+ A+V+ T +S GFGFVT +S+ + + AI++L+ LEG+ +RVN
Sbjct: 224 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAALDGQSLEGRALRVN 283
Query: 257 KA 258
A
Sbjct: 284 VA 285
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 54 DSTTRLFAV---AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK 110
D RL V A A D+ S F R+Y+GN+P +D+ L ++ EHG V
Sbjct: 180 DVNGRLLTVNKAAPRGARVERPPRDSGSSF--RIYVGNLPWQVDDSRLVELFSEHGKVVD 237
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
A V+YD+ TGRSR F FV M + + + I L+G + GR ++VN+ E+
Sbjct: 238 ARVVYDRDTGRSRGFGFVTMASQPELDDAIAALDGQSLEGRALRVNVAEE 287
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 108/176 (61%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D++ L ++ ++ G VE AEVIY++ T +SR F FV M TVE+A +E
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
N ++ GR + VN + + + E S Y++YVGN+ + L++ F
Sbjct: 197 YNRYDVNGRLLTVNKAARRGERPERPPRTFEQS------YRIYVGNIPWGIDDARLEQLF 250
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V+SA+V+ T +S GFGFVT +SE + AI++L+ L+G+ IRVN A
Sbjct: 251 SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GNIP ID+ L ++ EHG V A V+YD+ TGRSR F FV M + + + I
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 143 LNGTEIGGREIKVNITE 159
L+G + GR I+VN+ E
Sbjct: 291 LDGQSLDGRTIRVNVAE 307
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 7/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P + D+++L + ++ G VE AEVIY++ T RSR F FV M T+E+ ++
Sbjct: 125 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 184
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+G E+ GR + VN P + S ++VYVGNL V + L++ F
Sbjct: 185 FSGYELNGRVLTVN-KAAPKGAQPERPPRPPQS------FRVYVGNLPWDVDNSRLEQIF 237
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V A+V+ T +S GFGFVT SSE D AI++L+ L+G+ IRVN A
Sbjct: 238 SEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVA 293
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 7/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P + D+++L + ++ G VE AEVIY++ T RSR F FV M T+E+ ++
Sbjct: 123 KIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKM 182
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+G E+ GR + VN P + S ++VYVGNL V + L++ F
Sbjct: 183 FSGYELNGRVLTVN-KAAPKGAQPERPPRPPQS------FRVYVGNLPWDVDNSRLEQIF 235
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V A+V+ T +S GFGFVT SSE D AI++L+ L+G+ IRVN A
Sbjct: 236 SEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVA 291
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 109/186 (58%), Gaps = 10/186 (5%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
V+ P E ++Y+GN+P ++ +++L + + G VE +EVIY+ T SR F FV M TV
Sbjct: 110 VEPPEE--AKIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTV 167
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAKT 192
E+++ IE N + GR + VN + + E V P Y++YVGNL
Sbjct: 168 EESDKAIEMFNRYNLDGRLLTVN-------KAAPRGSRPERPPRVSEPSYRIYVGNLPWG 220
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
V S L++ FSE G+V+SA+V+ T +S GFGFVT SSE + AI++L+ L+G+
Sbjct: 221 VDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAALDGQELDGRA 280
Query: 253 IRVNKA 258
IRVN A
Sbjct: 281 IRVNVA 286
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE + R+Y+GN+P +D+ L ++ EHG V A+V+ D TGRSR F FV M + + N
Sbjct: 206 SEPSYRIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELN 265
Query: 138 AVIEKLNGTEIGGREIKVNI-TEKP 161
I L+G E+ GR I+VN+ E+P
Sbjct: 266 DAIAALDGQELDGRAIRVNVAAERP 290
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 108/191 (56%), Gaps = 23/191 (12%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY---------------KVYVG 187
NG E+ GR ++VN P + E+S+F ++ +VYVG
Sbjct: 148 FNGYELDGRALRVNSGPPPE--------KRENSSFRENSSFRGGSRGGGSFDSSNRVYVG 199
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NLA V + L+ FSE+G+V+ AKV+ + +S GFGFVT+SS E+ AI SL+
Sbjct: 200 NLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVD 259
Query: 248 LEGQRIRVNKA 258
L G+ IRV+ A
Sbjct: 260 LNGRAIRVSPA 270
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR I+V+ E
Sbjct: 255 LDGVDLNGRAIRVSPAE 271
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 11/206 (5%)
Query: 53 EDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAE 112
ED+ T + EE+ S ++Y+GN+P +++++ L ++ + G VE AE
Sbjct: 73 EDTVT----LGEESFGDGSEETFPEPPEEAKLYVGNLPYDVNSENLAQLFDQAGTVEVAE 128
Query: 113 VIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQA 172
+IY++ T +SR F FV M TV++A IEK + ++ GR + VN + +
Sbjct: 129 IIYNRETDQSRGFGFVTMSTVDEAEKAIEKFHRYDLNGRFLTVN-------KAAPRGSRP 181
Query: 173 EDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232
E + Y++YVGNL V L++ FSE GQV++A+V+ T +S GFGFVT SS
Sbjct: 182 ERPSVFKIAYRIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSS 241
Query: 233 EEDAEAAISSLNNSLLEGQRIRVNKA 258
E + AI++L+ L+G+ I VN A
Sbjct: 242 ETELNDAIAALDGQSLDGRAITVNIA 267
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 67 ASSSSSSVDTPSEF--ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
A+ S + PS F A R+Y+GN+P +D+ L ++ EHG V A V+ D+ TGRSR
Sbjct: 174 AAPRGSRPERPSVFKIAYRIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGRSRG 233
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT-EKP 161
F FV M + + N I L+G + GR I VNI E+P
Sbjct: 234 FGFVTMSSETELNDAIAALDGQSLDGRAITVNIAQERP 271
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 93/155 (60%), Gaps = 10/155 (6%)
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQ 171
EV+YD+ TGRSR F FV M + E+A A +E+ NG GR ++VN P D S +
Sbjct: 3 EVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPP--PRDGSAPR 60
Query: 172 AE--------DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSS 223
A +FVDS KVYVGNLA V + L+ FSE+GQVL AKV+ + +S
Sbjct: 61 APRGGGGGGGGGSFVDSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSR 120
Query: 224 GFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
GFGFVT+ S E+ AIS+L+ L+G++IRV A
Sbjct: 121 GFGFVTYGSAEEVNNAISNLDGIDLDGRQIRVTVA 155
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ +DN L + E G V A+VIYD+ +GRSR F FV + E+ N I
Sbjct: 80 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISN 139
Query: 143 LNGTEIGGREIKVNITE-KP 161
L+G ++ GR+I+V + E KP
Sbjct: 140 LDGIDLDGRQIRVTVAESKP 159
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 118/203 (58%), Gaps = 10/203 (4%)
Query: 61 AVAEETASSSSSSVD----TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYD 116
A A ET + + S + P E A+ +++GN P ++D+++L + + G VE AEVIY+
Sbjct: 85 ADAAETETGADDSAEGYFVEPPEDAK-LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYN 143
Query: 117 KYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN 176
+ T SR F FV M TVE+A + +EK NG + GR + VN + + + E +
Sbjct: 144 RQTDLSRGFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPE----RTERAP 199
Query: 177 FVDSP-YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235
P ++YV NLA V + L++ FSE G+++SA+V+ T +S GFGFVT S E +
Sbjct: 200 RTFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETE 259
Query: 236 AEAAISSLNNSLLEGQRIRVNKA 258
AI++L+ LEG+ IRV+ A
Sbjct: 260 MNDAIAALDGQSLEGRTIRVSVA 282
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+ N+ +DN L ++ EHG + A V+YD+ TGRSR F FV M + N I
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 143 LNGTEIGGREIKVNITE 159
L+G + GR I+V++ E
Sbjct: 267 LDGQSLEGRTIRVSVAE 283
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P+E A+ +++GN+P +ID+++L + ++ G VE AEVIY++ T RSR F FV M TVE+A
Sbjct: 148 PNEDAK-LFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEA 206
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ N ++ GR + VN Q + +++YVGNL V +
Sbjct: 207 EKAVDTFNRYDLSGRLLTVNKA------APRGSRQEREPRPFQPTFRIYVGNLPWDVDNG 260
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G+V+ A+VL + +S GFGFVT + E AI++L+ L+G+ IRVN
Sbjct: 261 RLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVN 320
Query: 257 KA 258
A
Sbjct: 321 VA 322
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P ++DN L ++ EHG V A V+YD+ +GRSR F FV M N I
Sbjct: 247 RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAA 306
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR I+VN+ E+
Sbjct: 307 LDGQSLDGRAIRVNVAEE 324
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P+E A+ +++GN+P +ID+++L + ++ G VE AEVIY++ T RSR F FV M TVE+A
Sbjct: 142 PNEDAK-LFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEA 200
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ N ++ GR + VN Q + +++YVGNL V +
Sbjct: 201 EKAVDTFNRYDLSGRLLTVNKA------APRGSRQEREPRPFQPTFRIYVGNLPWDVDNG 254
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G+V+ A+VL + +S GFGFVT + E AI++L+ L+G+ IRVN
Sbjct: 255 RLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVN 314
Query: 257 KA 258
A
Sbjct: 315 VA 316
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPSEFAR--RVYIGNIPRNIDNDELTKIVQEHGAVEKA 111
D + RL V + A S P F R+Y+GN+P ++DN L ++ EHG V A
Sbjct: 211 DLSGRLLTV-NKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDA 269
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
V+YD+ +GRSR F FV M N I L+G + GR I+VN+ E+
Sbjct: 270 RVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEE 318
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 111/183 (60%), Gaps = 9/183 (4%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PSE A+ +++GN+ ++D+ L + ++ G VE AEVIY++ T +SR F FV M TVE+A
Sbjct: 123 PSEEAK-LFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEA 181
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAKTVTS 195
+EK N ++ GR + VN + + E + V P ++VYVGNL V +
Sbjct: 182 ETAVEKFNRYDLNGRLLTVN-------KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 234
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
L++ FSE G+V+ A+V+ T +S GFGFVT S+E + AI++L+ +EG+ IRV
Sbjct: 235 GRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAIAALDGQNMEGRAIRV 294
Query: 256 NKA 258
N A
Sbjct: 295 NVA 297
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M + N
Sbjct: 218 EPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELND 277
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 278 AIAALDGQNMEGRAIRVNVAEE 299
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 20/183 (10%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D+ +L + ++ G VE AEVIY++ T SR F FV M TVE+A +E
Sbjct: 142 KIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVEM 201
Query: 143 LNGTEIGGREIKVNIT-------EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
+ ++ GR + VN E+P + Y++YVGNL V +
Sbjct: 202 FHRHDLDGRLLTVNKAAPRGSRPERP-------------PRVFEPGYRIYVGNLPWDVDN 248
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
L++ FSE G+V+ A+V+ T +S GFGFVT S+E + AI++L+ L+G+ IRV
Sbjct: 249 ARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRV 308
Query: 256 NKA 258
N A
Sbjct: 309 NVA 311
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E R+Y+GN+P ++DN L +I EHG V A V+YD+ TGRSR F FV M T + N
Sbjct: 232 EPGYRIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELND 291
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 292 AIAALDGRSLDGRAIRVNVAEQ 313
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 110/182 (60%), Gaps = 4/182 (2%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PSE A+ +++GN+P ++D+++L + + G VE AEVIY++ T +SR F FV M TVE+A
Sbjct: 105 PSEDAK-LFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEA 163
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
A K N + GR + VN K + + + +VYVGNL+ +
Sbjct: 164 EAGAAKFNRYDYNGRPLTVN---KAAPRGSRPEREERPPRTFEPVLRVYVGNLSWELDDS 220
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G+V+SA+V+ T +S GFGFVT S E++ AI++L+ +LEG+ I+V+
Sbjct: 221 RLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAALDGQILEGRTIKVS 280
Query: 257 KA 258
A
Sbjct: 281 VA 282
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L ++ EHG V A V+YD+ TGRSR F FV M ++ N I
Sbjct: 207 RVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAA 266
Query: 143 LNGTEIGGREIKVNITE 159
L+G + GR IKV++ E
Sbjct: 267 LDGQILEGRTIKVSVAE 283
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 112/197 (56%), Gaps = 7/197 (3%)
Query: 63 AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
EE +S+ S D ++++GN+P +++++ L + +E G+VE AEVIY+K T +S
Sbjct: 107 GEEVVASAEPSEDL------KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQS 160
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSP 181
R F FV+M T ED + K +G E+ GR + VN T K S DS
Sbjct: 161 RGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFGSGSGSRDSG 220
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
VYVGNL +V + L++ F E G V +A+++ T +S GFGFVT SSE D AI+
Sbjct: 221 LSVYVGNLPWSVDAARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
Query: 242 SLNNSLLEGQRIRVNKA 258
+L+ L+G+ IRV+ A
Sbjct: 281 ALDGQSLDGRTIRVSVA 297
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+GN+P ++D L +I +EHG VE A ++ D+ TGRSR F FV M + D N I L
Sbjct: 223 VYVGNLPWSVDAARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
Query: 144 NGTEIGGREIKVNITE 159
+G + GR I+V++ E
Sbjct: 283 DGQSLDGRTIRVSVAE 298
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 112/187 (59%), Gaps = 6/187 (3%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S V+ P E ++++GN+P ++D+ +L + ++ G VE AEVIY++ T +SR F FV M
Sbjct: 101 SFVEPPEE--AKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMS 158
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
TVE+A + +EK N +I GR + VN K + +F +S +YVGNL
Sbjct: 159 TVEEAESAVEKFNRYDIDGRLLTVN---KASPRGTRPERPPPRRSF-ESSLSIYVGNLPW 214
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
V + LK+ FS+ G V++A+V+ + +S GFGFVT S E + A+++L+ L+G+
Sbjct: 215 DVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLDGR 274
Query: 252 RIRVNKA 258
I+V+ A
Sbjct: 275 AIKVSVA 281
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P ++DN L +I +HG V A V+YD+ +GRSR F FV M + N + L
Sbjct: 207 IYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAAL 266
Query: 144 NGTEIGGREIKVNITE 159
+G + GR IKV++ E
Sbjct: 267 DGESLDGRAIKVSVAE 282
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+++GN+P + + E+++ E G V+ ++IYDK T RSR FAFV M T E+A I+
Sbjct: 119 RLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQM 178
Query: 143 LNGTEIGGREIKVNITEKPLV--QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
NG +GGR +VN E P + S ++ D +K+Y GNL V ++ L+
Sbjct: 179 FNGALLGGRTARVNYPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALRA 238
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + +L A+V+ + +S GFGFV+F + EDA+AA+ +L+ LEG+ +R++ A
Sbjct: 239 AFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMA 296
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+ + D L + + A VI+++ +GRSR F FV +T EDA A +E
Sbjct: 221 KIYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEA 280
Query: 143 LNGTEIGGREIKVNITEK 160
L+G E+ GR +++++ E+
Sbjct: 281 LDGVELEGRPLRLSMAEQ 298
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P +++VGNL T+TS + + FSE G+V + +++ T +S GF FVT ++ E+A AI
Sbjct: 117 PGRLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAI 176
Query: 241 SSLNNSLLEGQRIRVN 256
N +LL G+ RVN
Sbjct: 177 QMFNGALLGGRTARVN 192
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 109/187 (58%), Gaps = 7/187 (3%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
+S + PSE ++++GN+P ++D+++L ++ ++ G VE AEVIY++ T RSR F FV M
Sbjct: 113 ASFEEPSE-DLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMS 171
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
T E+ + K +G E+ GR + VN + L Q N S + YVGNL
Sbjct: 172 TSEEVERAVNKFSGFELDGRLLTVN---NAAPRGTPRLRQPRTFN---SGLRAYVGNLPW 225
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
V + L++ FSE G+V SA+V+ T + GFGFVT S+E + AI++L+ G+
Sbjct: 226 DVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDGQSFNGR 285
Query: 252 RIRVNKA 258
IRVN A
Sbjct: 286 AIRVNVA 292
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R Y+GN+P ++DN L ++ EHG VE A+V+YD+ TGR R F FV M + N I
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAA 276
Query: 143 LNGTEIGGREIKVNITEK 160
L+G GR I+VN+ E+
Sbjct: 277 LDGQSFNGRAIRVNVAEE 294
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 6/177 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+P ++D+++L + G VE AEVIY++ T RSR F FV M TVE+A+ +E
Sbjct: 113 KLYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEM 172
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+ E+ GR + VN S + F + YVGNL V ++ L++
Sbjct: 173 FHSYELNGRLLTVN-----KAAPRGSRPEKAPREFCPLLSESYVGNLPWDVDNDRLEQLS 227
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE-EDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+VLSA+V+ T +S GFGFVT +SE E +A + +L+ LEG+ IRVN A
Sbjct: 228 SEHGKVLSARVVSDRETERSRGFGFVTMASETEMNDATLGALDGESLEGRPIRVNVA 284
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 58 RLFAVAEETASSSSSSVDTPSEFARRV---YIGNIPRNIDNDELTKIVQEHGAVEKAEVI 114
RL V + A S P EF + Y+GN+P ++DND L ++ EHG V A V+
Sbjct: 181 RLLTV-NKAAPRGSRPEKAPREFCPLLSESYVGNLPWDVDNDRLEQLSSEHGKVLSARVV 239
Query: 115 YDKYTGRSRRFAFVMMKTVEDAN-AVIEKLNGTEIGGREIKVNITEK 160
D+ T RSR F FV M + + N A + L+G + GR I+VN+ E+
Sbjct: 240 SDRETERSRGFGFVTMASETEMNDATLGALDGESLEGRPIRVNVAEE 286
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 104/165 (63%), Gaps = 3/165 (1%)
Query: 97 ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156
EL ++ +E G V AEVI D+ T RSR F FV M++VE+A I NG+++GGR ++VN
Sbjct: 5 ELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVGGRTLRVN 64
Query: 157 ITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKV 213
E P +V +++ F+DS +K+Y GNL +TSE L F+ + +LSAKV
Sbjct: 65 FPEVPRGGEREVMEPRIRSGYKGFIDSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSAKV 124
Query: 214 LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ T +S GFGFV+F S E+AEAA+ ++N ++G+ +R+N A
Sbjct: 125 IYERDTGRSRGFGFVSFDSAENAEAALEAMNGEEVDGRPLRLNLA 169
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
+TS L + F E G+V A+V+ T +S GFGFVT S E+A+ AI N S + G+
Sbjct: 1 MTSSELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVGGRT 60
Query: 253 IRVN 256
+RVN
Sbjct: 61 LRVN 64
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+ + ++ L + A+VIY++ TGRSR F FV + E+A A +E
Sbjct: 94 KIYAGNLGWRLTSEGLGDAFANQPGLLSAKVIYERDTGRSRGFGFVSFDSAENAEAALEA 153
Query: 143 LNGTEIGGREIKVNIT 158
+NG E+ GR +++N+
Sbjct: 154 MNGEEVDGRPLRLNLA 169
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 105/176 (59%), Gaps = 8/176 (4%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GNIP + D+++L + + G VE AEVIY++ T +SR F FV M TVE+A +E
Sbjct: 31 KLFVGNIPYD-DSEKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAVEM 89
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+ +I GR + VN + + E D +VYVGNL V L++ F
Sbjct: 90 LHRYDINGRNLTVN-------KAAPRGSRPERPRESDPSLRVYVGNLPWQVDDSRLEQLF 142
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V+ A+V+ + +S GFGFVT ++ E+ + AI++L+ LEG+ +RVN A
Sbjct: 143 SEHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDGQSLEGRALRVNVA 198
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+P +D+ L ++ EHG V A V+YD+ +GRSR F FV + T E+ + I
Sbjct: 123 RVYVGNLPWQVDDSRLEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAA 182
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR ++VN+ E+
Sbjct: 183 LDGQSLEGRALRVNVAEE 200
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 105/176 (59%), Gaps = 8/176 (4%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
++V+ P E +VY+GN+P ++D++ L +I + G VE AEVIY++ TG+SR F FV M
Sbjct: 100 AAVEPPEE--AKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMS 157
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
TVE+A+ IE + +I GR + VN +++ Q F + ++ YVGNL
Sbjct: 158 TVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERPQRQ-----FAPA-FRAYVGNLPW 211
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
V L + FSE G+V+ AKV+ T +S GFGFV+ S+E+ AIS+L+ +
Sbjct: 212 QVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQV 267
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL V SE L + F + G V A+V+ T +S GFGFVT S+ E+A+ AI
Sbjct: 109 KVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFGFVTMSTVEEADKAIEM 168
Query: 243 LNNSLLEGQRIRVNKA 258
+ + G+ + VN+A
Sbjct: 169 FSRYDISGRLLNVNRA 184
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 9/195 (4%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E A S + PSE A+ +++GN+ ++++ L + ++ G VE AEVIY++ T +SR
Sbjct: 119 EGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 177
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YK 183
F FV M +V++A +EK N ++ GR + VN + + E + V P ++
Sbjct: 178 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-------KAAPRGSRPERAPRVYEPAFR 230
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
VYVGNL V + L++ FSE G+V+ A+V+ T +S GFGFVT S ++ AIS+L
Sbjct: 231 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 290
Query: 244 NNSLLEGQRIRVNKA 258
+ LEG+ IRVN A
Sbjct: 291 DGQNLEGRAIRVNVA 305
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N
Sbjct: 226 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 285
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 286 AISALDGQNLEGRAIRVNVAEE 307
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 9/195 (4%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E A S + PSE A+ +++GN+ ++++ L + ++ G VE AEVIY++ T +SR
Sbjct: 109 EGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 167
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YK 183
F FV M +V++A +EK N ++ GR + VN + + E + V P ++
Sbjct: 168 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-------KAAPRGSRPERAPRVYEPAFR 220
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
VYVGNL V + L++ FSE G+V+ A+V+ T +S GFGFVT S ++ AIS+L
Sbjct: 221 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 280
Query: 244 NNSLLEGQRIRVNKA 258
+ LEG+ IRVN A
Sbjct: 281 DGQNLEGRAIRVNVA 295
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N
Sbjct: 216 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 275
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 276 AISALDGQNLEGRAIRVNVAEE 297
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 9/195 (4%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E A S + PSE A+ +++GN+ ++++ L + ++ G VE AEVIY++ T +SR
Sbjct: 134 EGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 192
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YK 183
F FV M +V++A +EK N ++ GR + VN + + E + V P ++
Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-------KAAPRGSRPERAPRVYEPAFR 245
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
VYVGNL V + L++ FSE G+V+ A+V+ T +S GFGFVT S ++ AIS+L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 244 NNSLLEGQRIRVNKA 258
+ LEG+ IRVN A
Sbjct: 306 DGQNLEGRAIRVNVA 320
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 301 AISALDGQNLEGRAIRVNVAEE 322
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 9/195 (4%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E A S + PSE A+ +++GN+ ++++ L + ++ G VE AEVIY++ T +SR
Sbjct: 134 EGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 192
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YK 183
F FV M +V++A +EK N ++ GR + VN + + E + V P ++
Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-------KAAPRGSRPERAPRVYEPAFR 245
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
VYVGNL V + L++ FSE G+V+ A+V+ T +S GFGFVT S ++ AIS+L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 244 NNSLLEGQRIRVNKA 258
+ LEG+ IRVN A
Sbjct: 306 DGQNLEGRAIRVNVA 320
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 301 AISALDGQNLEGRAIRVNVAEE 322
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
Length = 197
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 97/173 (56%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GNI N+D+ L G E EV+YD+ G+SR FAFV + T + A IEK
Sbjct: 19 KLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTEDAAKTAIEK 78
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
L+G E+ GR ++VN + P + +P K +V N+ +V + L++ F
Sbjct: 79 LDGHELEGRPLRVNYPQVPRGGGGFGGGFGTRPSIPANPAKCFVANIPWSVDDQGLQEFF 138
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
S G V+ ++L + +S G GFVTF++ ++A AIS+L+ + L G+ IRV
Sbjct: 139 SSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAISALDGAELGGRSIRV 191
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K+YVGN+A V S+ML CF+ G +V+ KS GF FVT S+E+ A+ AI
Sbjct: 19 KLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTEDAAKTAIEK 78
Query: 243 LNNSLLEGQRIRVN 256
L+ LEG+ +RVN
Sbjct: 79 LDGHELEGRPLRVN 92
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 9/195 (4%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E A S + PSE A+ +++GN+ ++++ L + ++ G VE AEVIY++ T +SR
Sbjct: 120 EGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 178
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YK 183
F FV M +V++A +EK N ++ GR + VN + + E + V P ++
Sbjct: 179 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-------KAAPRGSRPERAPRVYEPAFR 231
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
VYVGNL V + L++ FSE G+V+ A+V+ T +S GFGFVT S ++ AIS+L
Sbjct: 232 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 291
Query: 244 NNSLLEGQRIRVNKA 258
+ LEG+ IRVN A
Sbjct: 292 DGQNLEGRAIRVNVA 306
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N
Sbjct: 227 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 286
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 287 AISALDGQNLEGRAIRVNVAEE 308
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 9/195 (4%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E A S + PSE A+ +++GN+ ++++ L + ++ G VE AEVIY++ T +SR
Sbjct: 115 EGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 173
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YK 183
F FV M +V++A +EK N ++ GR + VN + + E + V P ++
Sbjct: 174 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-------KAAPRGSRPERAPRVYEPAFR 226
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
VYVGNL V + L++ FSE G+V+ A+V+ T +S GFGFVT S ++ AIS+L
Sbjct: 227 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 286
Query: 244 NNSLLEGQRIRVNKA 258
+ LEG+ IRVN A
Sbjct: 287 DGQNLEGRAIRVNVA 301
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N
Sbjct: 222 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 281
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 282 AISALDGQNLEGRAIRVNVAEE 303
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+DN +L ++ + G V +I D+ TG SR F FV M TVE+A +E
Sbjct: 114 KLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVEL 173
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
N + GR + VN +V+ +N K+YVGNL L + F
Sbjct: 174 FNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTN------KIYVGNLPWQADDNSLLQLF 227
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+VL A+V+ T +S GFGFVT+SSE + AI++L+ + ++G+ +RVN A
Sbjct: 228 SEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIA 283
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 67 ASSSSSSVDTPSEFA---RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
A+ + V+ PS+ ++Y+GN+P D++ L ++ EHG V +A V+YD+ TGRSR
Sbjct: 189 AAPRGTKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSR 248
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
F FV + + N I L+GT++ GR ++VNI E
Sbjct: 249 GFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIAE 284
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+DN +L ++ + G V +I D+ TG SR F FV M TVE+A +E
Sbjct: 114 KLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVEL 173
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
N + GR + VN +V+ +N K+YVGNL L + F
Sbjct: 174 FNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTN------KIYVGNLPWQADDNSLLQLF 227
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+VL A+V+ T +S GFGFVT+SSE + AI++L+ + ++G+ +RVN A
Sbjct: 228 SEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIA 283
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 67 ASSSSSSVDTPSEFA---RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
A+ + V+ PS+ ++Y+GN+P D++ L ++ EHG V +A V+YD+ TGRSR
Sbjct: 189 AAPRGTKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSR 248
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
F FV + + N I L+GT++ GR ++VNI E
Sbjct: 249 GFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIAE 284
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 108/182 (59%), Gaps = 5/182 (2%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E A+ +++GN+P ++D+ +L + ++ G VE AEVIY++ T +SR F FV M TVE+A
Sbjct: 120 PPEEAK-LFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEA 178
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+EK + + GR + VN + + + + + +YVGNL V +
Sbjct: 179 ENAVEKFSRYDFDGRLLTVNKASPRGTRPE----RPPPRHSFEPSLSIYVGNLPWDVDNT 234
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G V++A+V+ T +S GFGFVT S E + + A+++L+ L+G+ IRV+
Sbjct: 235 RLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRVS 294
Query: 257 KA 258
A
Sbjct: 295 VA 296
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P ++DN L +I EHG V A V+YD+ T RSR F FV M + + L
Sbjct: 222 IYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAAL 281
Query: 144 NGTEIGGREIKVNITE 159
+G + GR I+V++ E
Sbjct: 282 DGQSLDGRPIRVSVAE 297
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P +ID++ L + + G VE AEVIY++ T RSR F FV M T+E+ +E
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+G E+ GR + VN Q + S +VYVGNL V L++ F
Sbjct: 178 FSGYELNGRVLTVNKAAPKGAQPERPPRPPRS---FSSGLRVYVGNLPWEVDDARLEQIF 234
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
SE G+V A+V+ T +S GFGFVT SSE D AI++L+
Sbjct: 235 SEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALD 276
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K++VGNL + SE L F + G V A+V+ T +S GFGFVT S+ E+ + A+
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 243 LNNSLLEGQRIRVNKA 258
+ L G+ + VNKA
Sbjct: 178 FSGYELNGRVLTVNKA 193
>gi|6900310|emb|CAB71338.1| putative Bci-5 protein [Hordeum vulgare subsp. vulgare]
Length = 76
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 64/76 (84%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNLAK VT+E+LK FSEKG+VLSA V R+PGT KS G+GFVTFSSEE+ EA +S+
Sbjct: 1 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAVVST 60
Query: 243 LNNSLLEGQRIRVNKA 258
NN+ LEGQ IRVN+A
Sbjct: 61 FNNTELEGQTIRVNRA 76
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ + + + L E G V A V T +S+ + FV + E+ AV+
Sbjct: 1 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAVVST 60
Query: 143 LNGTEIGGREIKVN 156
N TE+ G+ I+VN
Sbjct: 61 FNNTELEGQTIRVN 74
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAE-VIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R+Y+GN+ N D++EL K++Q+ G + E V+ D+ TGRSR F +V + +++ A ++
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
KL+G + GR +K + ++ P + + S KV++GNL V L++
Sbjct: 62 KLDGHIVQGRALKASFSQ-PYKKAG----KEGPVEVAASHTKVFIGNLPWGVDDGSLEEF 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G+V+ AK++ T +S GFGFVT SS ++A+ A+ SL+ + +G+R+RV A
Sbjct: 117 FRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRVKLA 173
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 52/77 (67%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+V+IGN+P +D+ L + + HG V +A+++YD+ TGRSR F FV + + ++A+ ++
Sbjct: 98 KVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKS 157
Query: 143 LNGTEIGGREIKVNITE 159
L+G + GR ++V + +
Sbjct: 158 LDGADCDGRRLRVKLAD 174
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 105/176 (59%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++++ +L + + G VE AEVIY++ T +SR F FV M TVE+ IE
Sbjct: 137 KIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRETDQSRGFGFVSMSTVEEVVKAIEM 196
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+ +I GR + VN + + E + ++VYVGN+ V + L++ F
Sbjct: 197 FDRYDINGRTLTVNKAAPRGSRAERPPRDFEPA------FRVYVGNIPWQVDNLRLEQLF 250
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V A+++ T +S GFGFVT SS+ + E AI++L+ S L+G+ I+V+ A
Sbjct: 251 SEYGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAIAALDGSDLDGRAIKVSMA 306
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Query: 77 PSEF--ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
P +F A RVY+GNIP +DN L ++ E+G VE+A +++D+ TGRSR F FV M +
Sbjct: 223 PRDFEPAFRVYVGNIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQI 282
Query: 135 DANAVIEKLNGTEIGGREIKVNIT-EKP 161
+ I L+G+++ GR IKV++ E+P
Sbjct: 283 EMEDAIAALDGSDLDGRAIKVSMAQERP 310
>gi|414883566|tpg|DAA59580.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 277
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 9/150 (6%)
Query: 113 VIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV----QVDLS 168
+IYDK T RSR FAFV M T E+A I+ +G +GGR +VN E P V +S
Sbjct: 79 IIYDKVTNRSRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMS 138
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ +D YK+Y GNL V ++ L+ F + +L A+V+ T +S GFGFV
Sbjct: 139 GRRRDDGT-----YKIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFV 193
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+FS+ EDA+AA+ SL+ LEG+ +R++ A
Sbjct: 194 SFSTAEDAQAALESLDGVELEGRSLRLSLA 223
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+ + D L + + + A VI+++ TGRSR F FV T EDA A +E
Sbjct: 148 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 207
Query: 143 LNGTEIGGREIKVNITEK-PLVQVDLSLLQAE 173
L+G E+ GR +++++ E+ P S QA+
Sbjct: 208 LDGVELEGRSLRLSLAEQNPPPGSPPSTAQAQ 239
>gi|255548039|ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223545556|gb|EEF47060.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 281
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 104/184 (56%), Gaps = 16/184 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+PR+ D EL ++ + +G V EV + TG SR FV M ++ A I L
Sbjct: 100 LYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAKNAIAAL 159
Query: 144 NGTEIGGREIKVNITEKPLVQVDLS--------LLQAEDSN-FVDSPYKVYVGNLAKTVT 194
+G++IGGRE++V + VD++ L A N F +SP+KVYVGNLA TV
Sbjct: 160 DGSDIGGREMRVKFS------VDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVK 213
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E L+ FS+ G V+SA+VL K+ +GF++FSS ++ +AA+ S N G+ +
Sbjct: 214 PEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAAL-SFNGKDFRGRILV 272
Query: 255 VNKA 258
V K
Sbjct: 273 VRKG 276
>gi|326512018|dbj|BAJ95990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 830
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 121/217 (55%), Gaps = 18/217 (8%)
Query: 55 STTRLFAVAEETASSSSSSVDTPS--------EFARR---VYIGNIPRNIDNDELTKIVQ 103
S R++ A ++++ S+ V +P+ + AR VY+ N+P ++DN+ L Q
Sbjct: 531 SAPRVYPAARASSNAHSAQVTSPATASGYPPEQDAREGATVYVRNLPYHLDNEGLKLNFQ 590
Query: 104 EHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV 163
G V ++VIYD+ GRSR F +V M TV++A + +G+E+ GR + V+I P
Sbjct: 591 HAGVVLFSKVIYDREIGRSRGFGYVTMNTVQEAEKAVRIYHGSEVHGRRLTVSIA-APRG 649
Query: 164 QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVL--RVPGTSK 221
+ +++ SP +++V NL V + L++ F++ GQV+ A+V+ R G S
Sbjct: 650 GTWVGATRSQSG----SPLRIFVCNLPSQVDNSRLEELFNKHGQVVDARVIYERREGASC 705
Query: 222 SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S GFGFVT +++E++ AI +LN +LE + V A
Sbjct: 706 SRGFGFVTMATDEESYKAIRALNKQVLEEHTLVVRVA 742
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 6/177 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAE-VIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R+Y+GN+ N D++EL K++Q+ G + E V+ D+ TGRSR F +V + +++ A ++
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
KL+G + GR +K + ++ P + + S KV++GNL V L++
Sbjct: 62 KLDGHIVQGRALKASYSQ-PYKKAG----KEGPVEVAASHTKVFIGNLPWGVDDGSLEEF 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G+V+ K++ T +S GFGFVT SS ++A+ A+ SL+ + +G+R+RV A
Sbjct: 117 FRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRLRVKLA 173
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 51/77 (66%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+V+IGN+P +D+ L + + HG V + +++YD+ TGRSR F FV + + ++A+ ++
Sbjct: 98 KVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKS 157
Query: 143 LNGTEIGGREIKVNITE 159
L+G + GR ++V + +
Sbjct: 158 LDGADCDGRRLRVKLAD 174
>gi|242078001|ref|XP_002443769.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
gi|241940119|gb|EES13264.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
Length = 308
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 105/180 (58%), Gaps = 4/180 (2%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +++ N+PR D +L ++ HG V E+ D TG SR AFV M+++ +A I
Sbjct: 123 RELFVCNLPRRCDVQDLLQLFTPHGTVLSVEISRDAETGISRGTAFVTMRSLAEARTAIN 182
Query: 142 KLNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
L+G E+ GRE+ V + + V+L+ + + +SP+KVYVGNLA +V + L
Sbjct: 183 ALDGFELDGREVFVKLASDVISNRKNVNLAHITPMKDHIFESPHKVYVGNLAWSVQPQDL 242
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
++ F++ G V+S ++L ++ +GF++FSS E+ EAA+ L+ ++ G+ I V +A
Sbjct: 243 RELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAAL-KLDRTVFFGRDIVVKEA 301
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P +++V NL + + L + F+ G VLS ++ R T S G FVT S +A AI
Sbjct: 122 PRELFVCNLPRRCDVQDLLQLFTPHGTVLSVEISRDAETGISRGTAFVTMRSLAEARTAI 181
Query: 241 SSLNNSLLEGQRIRVNKA 258
++L+ L+G+ + V A
Sbjct: 182 NALDGFELDGREVFVKLA 199
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E +VY+GN+ ++ +L ++ + G V ++ D+ GR+R + F+ + E+ A
Sbjct: 223 ESPHKVYVGNLAWSVQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEA 282
Query: 139 VIEKLNGTEIGGREIKV 155
+ KL+ T GR+I V
Sbjct: 283 AL-KLDRTVFFGRDIVV 298
>gi|357139508|ref|XP_003571323.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 288
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 101/180 (56%), Gaps = 4/180 (2%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +++ N+PR D+L + Q +G V EV D TG SR FV M+++ A +
Sbjct: 101 RELFVCNLPRRCGVDDLLHLFQPYGTVLSVEVSRDPETGISRGCGFVTMRSLAAARTAMN 160
Query: 142 KLNGTEIGGREIKVNITEKPLVQ---VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
L+G ++ GRE+ V + + LS + +SPYK+YVGNLA +V + L
Sbjct: 161 ALDGFDLDGREMFVKLASHVVSNRRNPSLSHTAPMKDHIFESPYKIYVGNLAWSVQPQHL 220
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
++ F++ G ++S ++L +++ +GF++FSS E+ +AA+ LNN+ G+ I V +A
Sbjct: 221 RELFTQCGNIVSTRLLTDRKGARNRVYGFLSFSSPEELDAAL-KLNNTNFHGRDIIVREA 279
>gi|125599171|gb|EAZ38747.1| hypothetical protein OsJ_23149 [Oryza sativa Japonica Group]
Length = 220
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Query: 97 ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156
E+++ E G V+ ++IYDK T RSR FAFV M T E+A I+ NG +GGR +VN
Sbjct: 5 EISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQMFNGALLGGRTARVN 64
Query: 157 ITEKPLV--QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVL 214
E P + S ++ D +K+Y GNL V ++ L+ F + +L A+V+
Sbjct: 65 YPEVPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADALRAAFEGQPGLLDARVI 124
Query: 215 RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ +S GFGFV+F + EDA+AA+ +L+ LEG+ +R++ A
Sbjct: 125 FERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMA 168
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y GN+ + D L + + A VI+++ +GRSR F FV +T EDA A +E
Sbjct: 93 KIYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEA 152
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAED 174
L+G E+ GR +++++ E+ S +Q+++
Sbjct: 153 LDGVELEGRPLRLSMAEQNPTAGSPSTVQSQE 184
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
+TS + + FSE G+V + +++ T +S GF FVT ++ E+A AI N +LL G+
Sbjct: 1 MTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQMFNGALLGGRT 60
Query: 253 IRVN 256
RVN
Sbjct: 61 ARVN 64
>gi|326497679|dbj|BAK05929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 5/198 (2%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E A+ S D R +++ N+PR DEL ++ +G V EV D TG SR
Sbjct: 111 EPAAEDGSGWDRRRPRPRELFVCNLPRRCGVDELLELFGPYGTVLSVEVSRDAETGISRG 170
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV----DLSLLQAEDSNFVDS 180
FV M+++ +A I L+G ++ GRE+ V + + LS + +S
Sbjct: 171 CGFVTMRSLAEARTAINALDGFDLDGREMFVKLAAHVIASRRNPGGLSHTPPMKDHIFES 230
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
YK+YVGNLA +V + L++ F++ G V+S ++L +S +GF++FSS E+ EAA+
Sbjct: 231 RYKIYVGNLAWSVQPQHLREHFTKCGTVVSTRLLTDRKGGRSRVYGFLSFSSAEELEAAL 290
Query: 241 SSLNNSLLEGQRIRVNKA 258
LNN+ G+ I V +A
Sbjct: 291 -QLNNTEFHGRDIIVREA 307
>gi|357440095|ref|XP_003590325.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479373|gb|AES60576.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 156
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
M VEDA I +GT +GGR IKVN E P+V + + + +VDSP+K+Y GNL
Sbjct: 1 MGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQM-GSTYRGYVDSPHKIYAGNL 59
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+TS+ L+K F+++ +LSAKV+ KS G+GFV+F + ED E A+S++N ++
Sbjct: 60 GWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQ 119
Query: 250 GQRIRVNKA 258
G+ +R+ A
Sbjct: 120 GRPLRLKLA 128
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
+ S+ VD+P ++Y GN+ ++ + L K + + A+V+Y++ G+SR
Sbjct: 39 QMGSTYRGYVDSP----HKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRG 94
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI---TEKPLVQVDLSLLQAEDSNFVDS 180
+ FV +T ED + +NG E+ GR +++ + KP S L N VDS
Sbjct: 95 YGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDNRKP------SSLDQNKGNNVDS 147
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
M +ED NAVIE LNG E GR ++VN + KP + ++ + ++ +K++VGNL
Sbjct: 1 MSCIEDCNAVIENLNGKEFLGRTLRVNFSSKP---------KPKEPLYPETEHKLFVGNL 51
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ +VT+E+L + F E G V+ A+VL T +S G+GFV +S++ + EAA+++LN+ LE
Sbjct: 52 SWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELE 111
Query: 250 GQRIRVNKA 258
G+ +RV+ A
Sbjct: 112 GRAMRVSLA 120
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++++GN+ ++ N+ LT+ QE+G V A V+YD TGRSR + FV T + A
Sbjct: 41 ETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEA 100
Query: 139 VIEKLNGTEIGGREIKVNITE 159
+ LN E+ GR ++V++ +
Sbjct: 101 AVAALNDVELEGRAMRVSLAQ 121
>gi|297843010|ref|XP_002889386.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335228|gb|EFH65645.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 298
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 101/179 (56%), Gaps = 5/179 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ NIPR+ D +L + Q G V EV + TG SR +V M ++ A I L
Sbjct: 115 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 174
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFV--DSPYKVYVGNLAKTVTSEMLK 199
+GTE+GGRE++V ++ P + + +L + + +S YKVYVGNL + L+
Sbjct: 175 DGTEVGGREMRVRYSVDMNPGARRNPEVLNSTPKKILMYESQYKVYVGNLPWFTQPDGLR 234
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS+ G ++S +VL T K+ F F++F++ E+ +AA+ SLN + EG+RI V +
Sbjct: 235 DHFSKFGTIVSTRVLHDRKTGKNRVFAFLSFTNSEERDAAL-SLNGTQYEGRRIIVREG 292
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 14/190 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+ + D++ L + + G V+ AEV+ D+ +GRSR FAFV M + + A
Sbjct: 91 KLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMASPDAAEKARRG 150
Query: 143 LNGTEIGGREIKVNITEK-----PLVQVDLSLLQAEDSNFVDSPY---------KVYVGN 188
L+GTE+ GR I+VN + P + ++E S +P ++YVGN
Sbjct: 151 LDGTELAGRAIRVNFPQPKGERAPRAERGERSERSERSERTYTPRGDGEAGDANRLYVGN 210
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L ++ ML+ F E G V A+V+ + +S GF FV S+ E+A A+++L+ +
Sbjct: 211 LPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEAMANLDGEEI 270
Query: 249 EGQRIRVNKA 258
G+ IRVN A
Sbjct: 271 GGRTIRVNLA 280
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A R+Y+GN+P ++D+ L + E G V A V+ D+ +GRSR FAFV + T E+AN +
Sbjct: 203 ANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEAM 262
Query: 141 EKLNGTEIGGREIKVNITEK 160
L+G EIGGR I+VN+ K
Sbjct: 263 ANLDGEEIGGRTIRVNLATK 282
>gi|255573485|ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 278
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 14/222 (6%)
Query: 38 PKLSYSLHNLKTASIEDSTTRL----FAVAEETASSSSSSVDTPSEFARRVYIGNIPRNI 93
P LS HN ++I + +L F+ A+E + T R++Y+ N+P ++
Sbjct: 41 PLLS---HNFSLSNIHLTARKLSFERFSTAQEIMIPEETQETTQK---RKLYVFNLPWSL 94
Query: 94 DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153
++ + + G V E+I K GRSR FAFV + + E+A A I+KL+ E+ GR I
Sbjct: 95 SVVDIKNLFGQCGTVTDVEIIKQK-NGRSRGFAFVTLASGEEAQAAIDKLDSHEVSGRII 153
Query: 154 KVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKV 213
+V K L + ++ +K+YV NLA V S L++ FS +S++V
Sbjct: 154 RVEFA-KRLKPPSPPSPTGTSAR--ETRHKIYVSNLAWKVRSTHLREFFSTNFSPVSSRV 210
Query: 214 LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ T +SSG+GFV+F++ E+AEAAIS+L+ L G+ +R+
Sbjct: 211 VFDSPTGRSSGYGFVSFATREEAEAAISALDGKELMGRPLRL 252
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ + + L + + + + V++D TGRS + FV T E+A A I
Sbjct: 180 KIYVSNLAWKVRSTHLREFFSTNFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAISA 239
Query: 143 LNGTEIGGREIKVNITEK 160
L+G E+ GR +++ +++
Sbjct: 240 LDGKELMGRPLRLKFSDR 257
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K+YV NL +++ +K F + G V ++++ +S GF FVT +S E+A+AAI
Sbjct: 84 KLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIK-QKNGRSRGFAFVTLASGEEAQAAIDK 142
Query: 243 LNNSLLEGQRIRVNKA 258
L++ + G+ IRV A
Sbjct: 143 LDSHEVSGRIIRVEFA 158
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 101 IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
+ ++ G VE AEVIY++ T +SR F FV M +V++A +EK N ++ GR + VN
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN---- 57
Query: 161 PLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGT 219
+ + E + V P ++VYVGNL V + L++ FSE G+V+ A+V+ T
Sbjct: 58 ---KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRET 114
Query: 220 SKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+S GFGFVT S ++ AIS+L+ LEG+ IRVN A
Sbjct: 115 GRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 153
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N
Sbjct: 74 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 133
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 134 AISALDGQNLEGRAIRVNVAEE 155
>gi|115474525|ref|NP_001060859.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|50725630|dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa Japonica
Group]
gi|113622828|dbj|BAF22773.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|125559951|gb|EAZ05399.1| hypothetical protein OsI_27607 [Oryza sativa Indica Group]
gi|215704603|dbj|BAG94231.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 110/198 (55%), Gaps = 4/198 (2%)
Query: 64 EETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
+E S S R +++ N+PR D D+L ++ + +G V E+ D TG SR
Sbjct: 116 QEEGSGSGEGRRPRRSRPRELFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSR 175
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ---VDLSLLQAEDSNFVDS 180
FV M+++ +A + L+G ++ GRE+ V ++ + + ++++ + +S
Sbjct: 176 GCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFES 235
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P+K+YVGN+A +V + L++ FS+ G V+S ++L + +GF++F+S E+ EAA+
Sbjct: 236 PHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAAL 295
Query: 241 SSLNNSLLEGQRIRVNKA 258
L+N+ G+ I V +A
Sbjct: 296 -KLDNTHFHGRNILVRQA 312
>gi|303286031|ref|XP_003062305.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455822|gb|EEH53124.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 227
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 5/180 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+ +D+ LT + E+ A A VI D TGRSR F FV + + E A I +
Sbjct: 44 KLYVGNLSWGVDDSMLTDVFAEYDASGIA-VISDMNTGRSRGFGFVEVPSQEIAEKAIAE 102
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAE----DSNFVDSPYKVYVGNLAKTVTSEML 198
L+G ++ GR I+VNI+E + + + E + N+ KVY GNL+ + L
Sbjct: 103 LDGADVDGRPIRVNISEARSSRREYDGERGERAPRERNYDFDARKVYFGNLSWGMDHLDL 162
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ E G+V ++++ T +S GFGFVT SS E AE ++ LN ++G+ +RVN A
Sbjct: 163 QDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKVVNGLNGQDVDGRVLRVNIA 222
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR+VY GN+ +D+ +L + E+G V + +I D+ TGRSR F FV M + E A V+
Sbjct: 145 ARKVYFGNLSWGMDHLDLQDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKVV 204
Query: 141 EKLNGTEIGGREIKVNIT 158
LNG ++ GR ++VNI
Sbjct: 205 NGLNGQDVDGRVLRVNIA 222
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 6/181 (3%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE R +++GN+ I ++ L + + GAV KA++I+D + G + FAFV A+
Sbjct: 34 SEDPRTLFVGNLDPAITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQAS 93
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
++ +NG ++ RE++VN +P D + + E S + V+VG+L+ + S
Sbjct: 94 QALQSMNGRQLLEREMRVNWAVEPNQPGDRN--KPETSRH----FHVFVGDLSAEIDSTK 147
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L++ F G+V AK++R T+K+ G+GFV++ EDAE AI +N L + IR N
Sbjct: 148 LREAFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNW 207
Query: 258 A 258
A
Sbjct: 208 A 208
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 106/242 (43%), Gaps = 34/242 (14%)
Query: 39 KLSYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDEL 98
+ S +L ++ + + R+ E + +T F V++G++ ID+ +L
Sbjct: 91 QASQALQSMNGRQLLEREMRVNWAVEPNQPGDRNKPETSRHF--HVFVGDLSAEIDSTKL 148
Query: 99 TKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158
+ G V +A++I D T +++ + FV EDA IE++NG +G R I+ N
Sbjct: 149 REAFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWA 208
Query: 159 EKPLVQVDLSLLQAEDSNFVDSPYK-------------------------VYVGNLAKTV 193
+ + + + + D P++ VYVGN+ ++
Sbjct: 209 TRKPEEEGGERRERDRNERGDRPHRGEGRHHHFEKTYDEVFREAAADNTSVYVGNI-NSL 267
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
T + +++ F GQ++ ++ KS G+ FV F +E A AI +NN + GQ +
Sbjct: 268 TEDEIRRGFERFGQIVEVRIF------KSQGYAFVKFEQKESAARAIVQMNNQDVSGQMV 321
Query: 254 RV 255
R
Sbjct: 322 RC 323
>gi|344231201|gb|EGV63083.1| hypothetical protein CANTEDRAFT_106956 [Candida tenuis ATCC 10573]
Length = 231
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + NID+D L + + G V A VI ++ TG+SR + +V ++ DA ++
Sbjct: 5 LFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKALQDF 64
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAED-SNFVDSPYK-VYVGNLAKTVTSEMLKK 200
G EI GR I +++ T KP Q +A+ + V +P +++GNL+ T + L +
Sbjct: 65 QGKEIDGRPINLDLSTSKP--QTPAKNDRAKKFGDVVSAPSDTLFIGNLSFNATRDKLFE 122
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F + G+V+S ++ P T + GFG+V + S E+A+AA+ +LN +EG+ R++
Sbjct: 123 AFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEALNGEYIEGRPCRLD 178
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ + + LK+ F G V+SA+V+ T KS G+G+V F S+ DAE A+
Sbjct: 2 PATLFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKAL 61
Query: 241 SSLNNSLLEGQRIRVN 256
++G+ I ++
Sbjct: 62 QDFQGKEIDGRPINLD 77
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ N D+L + ++G V + T + + F +V ++E+A A +E L
Sbjct: 106 LFIGNLSFNATRDKLFEAFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEAL 165
Query: 144 NGTEIGGREIKVNIT 158
NG I GR +++ +
Sbjct: 166 NGEYIEGRPCRLDYS 180
>gi|449445537|ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 286
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 36 RFPKLSYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFAR--RVYIGNIPRNI 93
RFP L L N E + T V + S S S + AR +Y+ N+PR+
Sbjct: 60 RFPVLFTVLDN------ESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSC 113
Query: 94 DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153
D EL ++ + +G V AEV + TG S+ +V M ++ A I L+G+++GGRE+
Sbjct: 114 DIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREM 173
Query: 154 KVNITEKPLVQVDLS--------LLQAEDSNFV-DSPYKVYVGNLAKTVTSEMLKKCFSE 204
+V VD++ L + N + +SPYKVYVGNL+ V L+ FS
Sbjct: 174 RVRFA------VDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSR 227
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
G V+SAKVL KS +GF++FSS + +A+IS
Sbjct: 228 FGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASIS 264
>gi|449518978|ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 284
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 23/217 (10%)
Query: 36 RFPKLSYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFAR--RVYIGNIPRNI 93
RFP L L N E + T V + S S S + AR +Y+ N+PR+
Sbjct: 58 RFPVLFTVLDN------ESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSC 111
Query: 94 DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153
D EL ++ + +G V AEV + TG S+ +V M ++ A I L+G+++GGRE+
Sbjct: 112 DIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREM 171
Query: 154 KVNITEKPLVQVDLS--------LLQAEDSNFV-DSPYKVYVGNLAKTVTSEMLKKCFSE 204
+V VD++ L + N + +SPYKVYVGNL+ V L+ FS
Sbjct: 172 RVRFA------VDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSR 225
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
G V+SAKVL KS +GF++FSS + +A+IS
Sbjct: 226 FGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASIS 262
>gi|388515725|gb|AFK45924.1| unknown [Lotus japonicus]
Length = 290
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 102/182 (56%), Gaps = 8/182 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+PR+ + L + + +G + EV + TG SR +V+M+++ A + I L
Sbjct: 104 IYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAAL 163
Query: 144 NGTEIGGREIKVNIT-EKPLVQVDLSLLQAE------DSNFVDSPYKVYVGNLAKTVTSE 196
+G+++GGRE++V + E L + D + E + + ++P+K+YVGNLA+ V E
Sbjct: 164 DGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPE 223
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L+ F G VLS +VL K+ + F++F SE + +AA+ SLN + G+ I V
Sbjct: 224 QLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAM-SLNGTEFYGRTIVVR 282
Query: 257 KA 258
+
Sbjct: 283 EG 284
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++YV NL ++ + L F G ++S +V R T +S G G+V S A++AI
Sbjct: 101 PCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAI 160
Query: 241 SSLNNSLLEGQRIRV 255
++L+ S + G+ +RV
Sbjct: 161 AALDGSDVGGRELRV 175
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++Y+GN+ R + ++L G V V++D+ G++R +AF+ ++ + +A
Sbjct: 206 EAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDA 265
Query: 139 VIEKLNGTEIGGREIKV 155
+ LNGTE GR I V
Sbjct: 266 AM-SLNGTEFYGRTIVV 281
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 132/266 (49%), Gaps = 24/266 (9%)
Query: 11 ILSQQNLIFSKTHFTFQSRQPILQIRFPKLSYSLH----------NLKTASIEDSTTRLF 60
IL L F TH SR L + P LS +LH N S+ + R
Sbjct: 5 ILEAATLSFFSTHHPSYSRF-FLSPKSPPLSLNLHISNPTPLISHNFPQPSLTQNHPRSK 63
Query: 61 AVAEETASSSSS-SVD-TPSE-------FARRVYIGNIPRNIDNDELTKIVQEHGAVEKA 111
++ + S+ +V+ TP E R++++ N+P + ++ + + G V
Sbjct: 64 SLCFQLCSTVQEVTVEITPEEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDV 123
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQ 171
E+I K GRSR FAFV M T E+A A I+K N E+ GR I+V ++ L + L
Sbjct: 124 EIIKQK-NGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKR-LRRPPSPRLP 181
Query: 172 AEDSNFV--DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
++ ++ +K+Y+ NLA V L++ FS +S++V+ +SSG+GFV+
Sbjct: 182 GTPADIPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVS 241
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRV 255
F++ E+A AAIS+ + L G+ IR+
Sbjct: 242 FATREEAVAAISAFSGKELMGRPIRL 267
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 72 SSVDTPS-EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+ D P+ E ++YI N+ + L + + + V++D GRS + FV
Sbjct: 183 TPADIPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSF 242
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITE 159
T E+A A I +G E+ GR I++ +E
Sbjct: 243 ATREEAVAAISAFSGKELMGRPIRLKFSE 271
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K++V NL + + +K F + G V ++++ +S GF FVT ++ E+A+AAI
Sbjct: 95 KLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQ-KNGRSRGFAFVTMTTGEEAQAAIDK 153
Query: 243 LNNSLLEGQRIRVNKA 258
N+ + G+ IRV A
Sbjct: 154 FNSLEVSGRIIRVEFA 169
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 7/235 (2%)
Query: 21 KTHFTFQSRQPILQIRFPKLSYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEF 80
K +F S P+L + P S + ++ RL + +E +S +
Sbjct: 30 KLRISFSS--PLLSLN-PTTPISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVNQ 86
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R++YI N+P ++ ++ ++ + G V E+I K GRSR FAFV M + ++A A I
Sbjct: 87 KRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-NGRSRGFAFVTMASPDEAQAAI 145
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+K + EI GR IKV ++ V+ K+YV NLA V S L+
Sbjct: 146 QKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVN---KLYVSNLAWKVRSNNLRD 202
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
FSE ++A+V+ +S+G+GFV+F++ E+A+ A+SSL L G+ +R+
Sbjct: 203 FFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRL 257
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++Y+ N+ + ++ L E+ A V++D GRS + FV T E+A
Sbjct: 181 ETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQT 240
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
+ L G E+ GR +++ +E+
Sbjct: 241 ALSSLEGKELMGRPLRLKFSER 262
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 6/186 (3%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D P + V++ N+P +I +DEL K+ EHG + A V+ D G S+ F F+ K
Sbjct: 193 ADRPQDVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGG-SKGFGFINFKDA 251
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN----FVDSPYKVYVGNL 189
E A +E LN E+ G+ + +K + + +AE+S +YV NL
Sbjct: 252 ESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNL 311
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ V + L++ F+ G + S KV++ G+ KS GFGFV F+S ++A A++ +N +++
Sbjct: 312 SDEVDDDALRELFANSGTITSCKVMK-DGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVK 370
Query: 250 GQRIRV 255
G+ + V
Sbjct: 371 GKPLYV 376
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED---ANAVI 140
+Y+G++ +++ +L ++ G V V D T RS +A+V + D A+ +
Sbjct: 25 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRAM 84
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E LN + G+ +++ + + D S ++ N +++ NL KT+ ++ L
Sbjct: 85 ETLNYHVVNGKPMRIMWSHR-----DPSARKSGVGN-------IFIKNLDKTIDAKALHD 132
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
FS G++LS KV S G+GFV F + A+ AI ++N +EG+ + V
Sbjct: 133 TFSAFGKILSCKVA-TDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVG 187
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 22/179 (12%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ + ID L G + +V D G S+ + FV + A+ I+ +
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDA-NGVSKGYGFVHFEDQAAADRAIQTV 174
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVY----VGNLAKTVTSEMLK 199
N EI G+ + V +K D P VY V NL + + L
Sbjct: 175 NQKEIEGKIVYVGPFQK----------------RADRPQDVYTNVFVKNLPADIGDDELG 218
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K +E G++ SA V++ S GFGF+ F E A + LN + G+ + +A
Sbjct: 219 KMATEHGEITSAVVMK-DDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRA 276
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D+D L ++ G + +V+ D +G+S+ F FV + ++A + ++
Sbjct: 306 LYVKNLSDEVDDDALRELFANSGTITSCKVMKDG-SGKSKGFGFVCFTSHDEATRAVTEM 364
Query: 144 NGTEIGGREIKVNITEK 160
NG + G+ + V + ++
Sbjct: 365 NGKMVKGKPLYVALAQR 381
>gi|15223293|ref|NP_171616.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|21554268|gb|AAM63343.1| ribonucleoprotein, putative [Arabidopsis thaliana]
gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|332189110|gb|AEE27231.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 293
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ NIPR+ D +L + Q G V EV + TG SR +V M ++ A I L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFV--DSPYKVYVGNLAKTVTSEMLK 199
+GTE+GGRE++V ++ P + + +L + + +S +KVYVGNL + L+
Sbjct: 170 DGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLR 229
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS+ G ++S +VL T ++ F F++F+S E+ +AA+ S N + EG+RI V +
Sbjct: 230 NHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIVREG 287
>gi|413941709|gb|AFW74358.1| hypothetical protein ZEAMMB73_309849 [Zea mays]
Length = 826
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 105/180 (58%), Gaps = 4/180 (2%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +++ N+PR D +L ++ HG V E+ D +G SR A V M+++ +A A I+
Sbjct: 641 RELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAID 700
Query: 142 KLNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
L+G ++ GRE+ V + + V+L+ + + ++P+KVYVGNLA +V + L
Sbjct: 701 ALDGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDL 760
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
++ F++ G V+S ++L ++ +GF++FSS ++ E A+ L+ ++ G+ I V +A
Sbjct: 761 RELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEAL-KLDRTVFFGRDIVVKEA 819
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E +VY+GN+ ++ +L ++ + G V ++ D+ GR+R + F+ + ++
Sbjct: 741 ETPHKVYVGNLAWSVQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEE 800
Query: 139 VIEKLNGTEIGGREIKV 155
+ KL+ T GR+I V
Sbjct: 801 AL-KLDRTVFFGRDIVV 816
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P +++V NL + + L + F+ G VLS ++ R + S G VT S +A AAI
Sbjct: 640 PRELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAI 699
Query: 241 SSLNNSLLEGQRIRVNKA 258
+L+ ++G+ + V A
Sbjct: 700 DALDGFDMDGREVFVKLA 717
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 129/266 (48%), Gaps = 24/266 (9%)
Query: 11 ILSQQNLIFSKTHFTFQSRQPILQIRFPKLSYSLH----------NLKTASIEDSTTRLF 60
IL L F TH SR L + P LS +LH N S+ + R
Sbjct: 5 ILEAATLSFFSTHHPSYSRF-FLSPKSPPLSLNLHISNPTPLISHNFPQPSLTQNHPRSK 63
Query: 61 AVAEETASSSSSSVD--TPSE-------FARRVYIGNIPRNIDNDELTKIVQEHGAVEKA 111
++ + S+ TP E R++++ N+P + ++ + + G V
Sbjct: 64 SLCFQLCSTVQEVTMEITPEEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDV 123
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQ 171
E+I K GRSR FAFV M T E+A A I+K N E+ GR I+V ++ L + L
Sbjct: 124 EIIKQK-NGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKR-LRRPPSPRLP 181
Query: 172 AEDSNFV--DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
++ ++ +K+Y+ NLA V L++ FS +S++V+ +SSG+GFV+
Sbjct: 182 GTPADIPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVS 241
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRV 255
F++ E+A AAIS+ + L G+ IR+
Sbjct: 242 FATREEAVAAISAFSGKELMGRPIRL 267
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 72 SSVDTPS-EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+ D P+ E ++YI N+ + L + + + V++D GRS + FV
Sbjct: 183 TPADIPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSF 242
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITE 159
T E+A A I +G E+ GR I++ +E
Sbjct: 243 ATREEAVAAISAFSGKELMGRPIRLKFSE 271
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K++V NL + + +K F + G V ++++ +S GF FVT ++ E+A+AAI
Sbjct: 95 KLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQ-KNGRSRGFAFVTMTTGEEAQAAIDK 153
Query: 243 LNNSLLEGQRIRVNKA 258
N+ + G+ IRV A
Sbjct: 154 FNSLEVSGRIIRVEFA 169
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 4/174 (2%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R++YI N+P ++ ++ ++ + G V E+I K GRSR FAFV M + ++A A I+
Sbjct: 94 RKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-NGRSRGFAFVTMASPDEAQAAIQ 152
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
K + EI GR IKV ++ V+ K+YV NLA V S L+
Sbjct: 153 KFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVN---KLYVSNLAWKVRSNNLRDF 209
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
FSE ++A+V+ +S+G+GFV+F++ E+A+ A+SSL L G+ +R+
Sbjct: 210 FSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRL 263
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++Y+ N+ + ++ L E+ A V++D GRS + FV T E+A
Sbjct: 187 ETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQT 246
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
+ L G E+ GR +++ +E+
Sbjct: 247 ALSSLEGKELMGRPLRLKFSER 268
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 172 AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+E++ V+ K+Y+ NL +++ +K+ F + G V ++++ +S GF FVT +
Sbjct: 84 SEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQ-KNGRSRGFAFVTMA 142
Query: 232 SEEDAEAAISSLNNSLLEGQRIRV 255
S ++A+AAI ++ + G+ I+V
Sbjct: 143 SPDEAQAAIQKFDSQEISGRVIKV 166
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 113/210 (53%), Gaps = 12/210 (5%)
Query: 51 SIEDSTTRLFAVAEETASSSSSSVDTPSEFARRV-YIGNIPRNIDNDELTKIVQE-HGAV 108
S ++S T+L +EE+ + +S+V+ E + ++ Y+GN+ ++ +++ +I +
Sbjct: 70 SPKESETQL--ESEESTVAPASAVNGGREISNKILYVGNLAKSASEEQINEIFSSVSNPI 127
Query: 109 EKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLS 168
+ +++ DK +AF+ EDA + LNG ++ G +IKVN + S
Sbjct: 128 KSIKLLNDK-NKLGFNYAFIEFNESEDAEKALNSLNGKDVNGSDIKVNWAYQ-------S 179
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
A S + Y ++VG+L+ V E LKK F++ G + A V+ TS+S G+GFV
Sbjct: 180 AAIAGGSTPEEPSYNIFVGDLSSEVNDEALKKAFTKFGSLKQAHVMWDMQTSRSRGYGFV 239
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
TF +EDAE A+ S+N L G+ IR N A
Sbjct: 240 TFGKQEDAENALQSMNGEWLGGRAIRCNWA 269
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + NID++ L + + G V A VIY+K +G+SR + +V +T A +++
Sbjct: 293 LFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYVDFETKSQAQHALKEY 352
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEMLK 199
G EI GR I ++++E + +A+ F D P +++GNL+ + L
Sbjct: 353 QGREIDGRPINLDMSESKPRPSNPRFDRAK--QFGDVPSAPSSTLFIGNLSFNAQRDNLY 410
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F E G+V+S ++ P T + GFG++ FS+ ++A+AA+ +LN +EG+ R++
Sbjct: 411 DIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEALNGEYVEGRPCRLD 467
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D PS + ++IGN+ N D L I E+G V + T + + F ++ TV+
Sbjct: 386 DVPSAPSSTLFIGNLSFNAQRDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVD 445
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A A +E LNG + GR +++ +
Sbjct: 446 EAKAALEALNGEYVEGRPCRLDFS 469
>gi|212722626|ref|NP_001131649.1| uncharacterized protein LOC100193009 [Zea mays]
gi|194692152|gb|ACF80160.1| unknown [Zea mays]
Length = 314
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 105/180 (58%), Gaps = 4/180 (2%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +++ N+PR D +L ++ HG V E+ D +G SR A V M+++ +A A I+
Sbjct: 129 RELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAID 188
Query: 142 KLNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
L+G ++ GRE+ V + + V+L+ + + ++P+KVYVGNLA +V + L
Sbjct: 189 ALDGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDL 248
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
++ F++ G V+S ++L ++ +GF++FSS ++ E A+ L+ ++ G+ I V +A
Sbjct: 249 RELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEAL-KLDRTVFFGRDIVVKEA 307
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P +++V NL + + L + F+ G VLS ++ R + S G VT S +A AAI
Sbjct: 128 PRELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAEARAAI 187
Query: 241 SSLNNSLLEGQRIRVNKA 258
+L+ ++G+ + V A
Sbjct: 188 DALDGFDMDGREVFVKLA 205
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E +VY+GN+ ++ +L ++ + G V ++ D+ GR+R + F+ + ++
Sbjct: 229 ETPHKVYVGNLAWSVQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEE 288
Query: 139 VIEKLNGTEIGGREIKV 155
+ KL+ T GR+I V
Sbjct: 289 AL-KLDRTVFFGRDIVV 304
>gi|149244172|ref|XP_001526629.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449023|gb|EDK43279.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 510
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 5/197 (2%)
Query: 63 AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
AEETA+ +S +V E +++G + NID+D L K + G V A VI ++ TG+S
Sbjct: 243 AEETAAPTSPAV--AEEEGATLFVGRLSWNIDDDWLKKEFEHLGDVIGARVIMERATGKS 300
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSP 181
R + +V KT A + ++ G EI GR I +++ T KP + +A SP
Sbjct: 301 RGYGYVDFKTKAAAEKALAEMQGKEIDGRPINLDMSTGKPHASKANAGDRARQFGDSQSP 360
Query: 182 YK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
+++GNL+ + L + F E G V+S +V P T + GFG+V FSS ++A+AA
Sbjct: 361 PSDTLFIGNLSFNANRDSLFEIFGEYGTVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAA 420
Query: 240 ISSLNNSLLEGQRIRVN 256
+ +LN +E + R++
Sbjct: 421 LEALNGEYIENRPCRLD 437
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D+ S + ++IGN+ N + D L +I E+G V V T + + F +V +V+
Sbjct: 356 DSQSPPSDTLFIGNLSFNANRDSLFEIFGEYGTVISCRVPTHPDTQQPKGFGYVQFSSVD 415
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A A +E LNG I R +++ +
Sbjct: 416 EAKAALEALNGEYIENRPCRLDFS 439
>gi|406602740|emb|CCH45698.1| Nuclear localization sequence-binding protein [Wickerhamomyces
ciferrii]
Length = 467
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 110/200 (55%), Gaps = 10/200 (5%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V EE A + VD E +++G + +ID++ L + + G V A VI+++ TG+
Sbjct: 218 VEEEAAPAKKQKVD---EEPATLFVGRLSWSIDDEWLKREFEPLGGVISARVIFERATGK 274
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDS 180
SR + +V + A +++ G EI GR I +++ T KP + S +A S F D+
Sbjct: 275 SRGYGYVDFDSKSAAEKALKEYQGREIDGRPINLDMSTGKPHASNNRSNDRA--SKFGDT 332
Query: 181 PYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
P +++GNL+ + L + FSE G ++S ++ P T + GFG+V + S ++A
Sbjct: 333 PSAPSDTLFLGNLSFNANRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEA 392
Query: 237 EAAISSLNNSLLEGQRIRVN 256
+AA+ +LN +EG+ +R++
Sbjct: 393 KAALEALNGEYIEGRPVRLD 412
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 56/104 (53%)
Query: 55 STTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI 114
ST + A + +S DTPS + +++GN+ N + D L+++ E+G++ +
Sbjct: 311 STGKPHASNNRSNDRASKFGDTPSAPSDTLFLGNLSFNANRDNLSEVFSEYGSIVSVRIP 370
Query: 115 YDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158
T + + F +V +V++A A +E LNG I GR ++++ +
Sbjct: 371 THPDTEQPKGFGYVQYGSVDEAKAALEALNGEYIEGRPVRLDFS 414
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 98/174 (56%), Gaps = 1/174 (0%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R++++ N+P ++ ++ + E G V E+I K GRSR +AFV M + E+A AV+E
Sbjct: 89 RKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQK-DGRSRGYAFVTMDSGEEAQAVVE 147
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
K + E+ GR I+V ++ ++ +K+YV NLA V S L++
Sbjct: 148 KFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREF 207
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
FS +S +V+ + +S G+GF +F+++E+AEAAIS+L+ L G+ + +
Sbjct: 208 FSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHL 261
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
++Y+ N+ + + L + + V++D +GRS + F T E+A A I
Sbjct: 188 HKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAIS 247
Query: 142 KLNGTEIGGREIKVNITEK 160
L+G E+ GR + + + K
Sbjct: 248 ALDGKELMGRPVHLKFSVK 266
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K++V NL +++ +K F E G V ++++ +S G+ FVT S E+A+A +
Sbjct: 90 KLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIK-QKDGRSRGYAFVTMDSGEEAQAVVEK 148
Query: 243 LNNSLLEGQRIRVNKA 258
++ L G+ IRV A
Sbjct: 149 FDSYELSGRIIRVEFA 164
>gi|79316226|ref|NP_001030925.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189111|gb|AEE27232.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 294
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 6/180 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVI-YDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+Y+ NIPR+ D +L + Q G V EV+ + TG SR +V M ++ A I
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 143 LNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFV--DSPYKVYVGNLAKTVTSEML 198
L+GTE+GGRE++V ++ P + + +L + + +S +KVYVGNL + L
Sbjct: 170 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 229
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ FS+ G ++S +VL T ++ F F++F+S E+ +AA+ S N + EG+RI V +
Sbjct: 230 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIVREG 288
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 7/176 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D D L+KI ++ G +V+ D GRS+ F FV + EDA I+ +
Sbjct: 292 VYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDD-CGRSKGFGFVNFQKHEDAQNAIDNM 350
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVD-SPYKVYVGNLAKTVTSEMLK 199
NG E+ GR+I +K L Q+ Q + + V +Y+ NL + E L+
Sbjct: 351 NGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLR 410
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
K FS G + SAKV+ G SK GFGFV FS+ E+A A++ +N L+ + + V
Sbjct: 411 KEFSSFGTITSAKVMMNNGRSK--GFGFVCFSAPEEATTAVTEMNGRLVASKPLYV 464
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N+ ++I+N L G + +VI D S+ + FV + E A I+K+
Sbjct: 200 VFVKNLEKSINNKSLYDAFSSFGNILSCKVITDD--NGSKGYGFVHFEHRESAERAIQKM 257
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + ++K+ + + S L A+ F + VY+ N + + + L K F
Sbjct: 258 NGILLN--DLKIFVGHFKSRKDRESELGAQTREFTN----VYIKNFGEDMDEDRLSKIFE 311
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+R +S GFGFV F EDA+ AI ++N L G++I +A
Sbjct: 312 KFGPTLSVKVMR-DDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRA 365
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ +V F DAE ++ +
Sbjct: 112 LYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTDM 171
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 172 NLYIIKGKPVRL 183
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ +ID++ L K G + A+V+ + GRS+ F FV E+A + ++
Sbjct: 395 LYIKNLDDDIDDENLRKEFSSFGTITSAKVMMN--NGRSKGFGFVCFSAPEEATTAVTEM 452
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 453 NGRLVASKPLYVALAQR 469
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 3/196 (1%)
Query: 63 AEETASSSSSSVDTPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
AEE A + + T +E V++G + N+DND L + Q G V A V D+ +G
Sbjct: 89 AEEPAQTPAKKAKTDTEAGESNTVFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSG 148
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS 180
+SR FA+V + +A +E++NG +I GRE+ V+I++ + DS S
Sbjct: 149 KSRGFAYVEFSSPAEAQKAVEEMNGKQIDGREVNVDISQPRQPNPEKRAQVFGDSESQPS 208
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
++VGNL+ T + L F E G V ++ + K GFG+V F +E A A
Sbjct: 209 -TTLFVGNLSWNTTEDGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAY 267
Query: 241 SSLNNSLLEGQRIRVN 256
++ L+G+ +R++
Sbjct: 268 EAMKGKDLDGRTLRLD 283
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 98/174 (56%), Gaps = 1/174 (0%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R++++ N+P ++ ++ + E G V E+I K GRSR +AFV M + E+A AV+E
Sbjct: 59 RKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQK-DGRSRGYAFVTMDSGEEAQAVVE 117
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
K + E+ GR I+V ++ ++ +K+YV NLA V S L++
Sbjct: 118 KFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREF 177
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
FS +S +V+ + +S G+GF +F+++E+AEAAIS+L+ L G+ + +
Sbjct: 178 FSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHL 231
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
++Y+ N+ + + L + + V++D +GRS + F T E+A A I
Sbjct: 158 HKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAIS 217
Query: 142 KLNGTEIGGREIKVNITEKPL 162
L+G E+ GR + + + K +
Sbjct: 218 ALDGKELMGRPVHLKFSVKTI 238
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K++V NL +++ +K F E G V ++++ +S G+ FVT S E+A+A +
Sbjct: 60 KLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIK-QKDGRSRGYAFVTMDSGEEAQAVVEK 118
Query: 243 LNNSLLEGQRIRVNKA 258
++ L G+ IRV A
Sbjct: 119 FDSYELSGRIIRVEFA 134
>gi|147902038|ref|NP_001087561.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
laevis]
gi|51261513|gb|AAH80105.1| MGC84540 protein [Xenopus laevis]
Length = 389
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 15/187 (8%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E R +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 ELPRTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVD-------LSLLQAEDSNFVDSPYKVYVGNLAK 191
+ +NG +I G+E+KVN P Q +S L+++D + V+VG+L+
Sbjct: 62 SLAAINGRKIMGKEVKVNWATTPSSQKKDANSSSVVSTLRSQDH------FHVFVGDLSP 115
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
+T++ +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI+ + L G+
Sbjct: 116 EITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGR 175
Query: 252 RIRVNKA 258
+IR N A
Sbjct: 176 QIRTNWA 182
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I D++ G + A V+ D TG+S+ + FV DA I +
Sbjct: 107 HVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQ 166
Query: 143 LNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L E+ SP VY G + +T
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNAKQLTYEEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FSS E A AI S+N + +EG ++
Sbjct: 227 EQLMRQTFSPFGQIMEVRVF------PDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280
Query: 255 V 255
Sbjct: 281 C 281
>gi|341893520|gb|EGT49455.1| CBN-TIAR-2 protein [Caenorhabditis brenneri]
Length = 420
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 10/197 (5%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
VAE+ +S + P R +++GN+ + ++ + + + GAV KA++I+D + G
Sbjct: 22 VAEKEGYQLASGSEDP----RTLFVGNLDPAVTDEFIATLFNQMGAVTKAKIIFD-FQGL 76
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP 181
+ +AF+ A ++ +NG ++ RE++VN +P D S +F
Sbjct: 77 ADPYAFIEFSDHNQAAQALQSMNGRQLLDRELRVNWAVEPNQPGDSSRKMDYSRHF---- 132
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
V+VG+L+ + S LK+ F G+V AK++R T+K+ G+GFV++ EDAE AI
Sbjct: 133 -HVFVGDLSSEIDSTKLKEAFLPFGEVSEAKIIRDTTTNKAKGYGFVSYPRREDAERAIE 191
Query: 242 SLNNSLLEGQRIRVNKA 258
+N L + IR N A
Sbjct: 192 QMNGQWLGRRTIRTNWA 208
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L +I ++G +V+ D +G+SR F FV + EDAN +E++
Sbjct: 193 VYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDP-SGKSRGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NGTE+ G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKEIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P + KS GFGFV++ EDA A+ +N + L G+ + V +A
Sbjct: 212 DKYGKTLSVKVMTDP-SGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA 266
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L +T ML + FS G VLS +V R T +S G+ +V FS DAE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVVKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ ++ GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
Query: 75 DTPSEFARRV---YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
+TPS+ + V ++G + +D+ L + Q V A V+ ++ TGRSR + +V +
Sbjct: 250 ETPSKKPKEVATLFVGRLAWAVDDQRLLEEFQSLDGVLSARVMTERETGRSRGYGYVDFE 309
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYV 186
+ E A +E+ G EI GR I +++ T KP Q + D+P + ++V
Sbjct: 310 SKEQAQKALEQFQGREIEGRPINLDMSTSKPQTPSQNQKFQDRAKKYGDTPSQPSDTLFV 369
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
GNL+ + LK+ F + G VL ++ P + + GFG+V F S ++A+AA+ +LN
Sbjct: 370 GNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEALNGE 429
Query: 247 LLEGQRIRVN 256
+ G+ +R++
Sbjct: 430 YIAGRPVRLD 439
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPS+ + +++GN+ D D L + ++HG V + + + + F +V +V+
Sbjct: 358 DTPSQPSDTLFVGNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVD 417
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A A +E LNG I GR ++++ +
Sbjct: 418 EAKAALEALNGEYIAGRPVRLDFS 441
>gi|241947949|ref|XP_002416697.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
gi|223640035|emb|CAX44279.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
Length = 423
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + NID+ L + + G V A VI ++ TG+SR + +V +T A +E++
Sbjct: 198 LFVGRLSWNIDDSWLKREFEHIGGVISARVIMERATGKSRGYGYVDFETKSAAEKALEEM 257
Query: 144 NGTEIGGREIKVNI-TEKPLVQ--VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
G EI GR I +++ T KP + Q DS S ++VGNL+ + L
Sbjct: 258 QGKEIDGRPINLDMSTGKPHASRSTNDRAKQYGDSQSALSD-TLFVGNLSFNANRDNLFT 316
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F E G V+S +V P T + GFG+V FSS ++A+AA+ +LN +EG+ R++
Sbjct: 317 VFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGRPCRLD 372
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D+ S + +++GN+ N + D L + E+G V V T + + F +V +V+
Sbjct: 291 DSQSALSDTLFVGNLSFNANRDNLFTVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVD 350
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A A +E LNG I GR +++ +
Sbjct: 351 EAKAALEALNGEYIEGRPCRLDFS 374
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L ++ ++G +V+ D TG+SR F FV + EDAN +E++
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NGTE+ G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 310
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 LRKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 359
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 159
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + ++ E +N VY+ N + + LK+ F
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTN-------VYIKNFGDDMDDQRLKELF 212
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P T KS GFGFV++ EDA A+ +N + L G+ + V +A
Sbjct: 213 DKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA 267
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L +T ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 74 NFDVVKGKPIRI 85
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ ++ GRS+ F FV + E+A + ++
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 354
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 355 NGRIVGSKPLYVALAQR 371
>gi|45361397|ref|NP_989276.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
gi|39795756|gb|AAH64164.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
Length = 386
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 15/187 (8%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
+ R +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 DLPRTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVD-------LSLLQAEDSNFVDSPYKVYVGNLAK 191
+ +NG +I G+E+KVN P Q +S L+++D + V+VG+L+
Sbjct: 62 SLAAMNGRKIMGKEVKVNWATTPSSQKKDANSSSVVSTLRSQDH------FHVFVGDLSP 115
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
+T++ +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI+ + L G+
Sbjct: 116 EITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGR 175
Query: 252 RIRVNKA 258
+IR N A
Sbjct: 176 QIRTNWA 182
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I D++ G + A V+ D TG+S+ + FV DA I +
Sbjct: 107 HVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQ 166
Query: 143 LNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L E+ SP VY G + +T
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLTYEEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FSS E A AI S+N + +EG ++
Sbjct: 227 EQLMRQTFSPFGQIMEVRVF------PDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280
Query: 255 V 255
Sbjct: 281 C 281
>gi|432875366|ref|XP_004072806.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I D T + + FV A A +
Sbjct: 7 RTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVD--TAGNDPYCFVEFYDHRHAAASLA 64
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 65 AMNGRKIMGKEVKVNWATTPTSQ------KKDTSNH----FHVFVGDLSPEITTEDVKAA 114
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 115 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQHMGGQWLGGRQIRTNWA 171
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ +S DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPTSQKKDTSNHF--HVFVGDLSPEITTEDVKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDSNFVDSP 181
V DA I+ + G +GGR+I+ N T KP + + L E+ SP
Sbjct: 141 VSFFNKWDAENAIQHMGGQWLGGRQIRTNWATRKPPAPKTTYESNSKHLSFEEVMSQSSP 200
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G ++ +T +++++ FS GQ++ +V G+ FV F+S E A A
Sbjct: 201 SNCTVYCGGVSSGLTEQLMRQTFSAFGQIMEVRVF------PDKGYSFVRFNSHESAAHA 254
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + ++G ++
Sbjct: 255 IVSVNGTSIDGHVVKC 270
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D P +YVGNL++ VT ++ + F++ G S K++ T+ + + FV F A A
Sbjct: 4 DQPRTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIV--DTAGNDPYCFVEFYDHRHAAA 61
Query: 239 AISSLNNSLLEGQRIRVNKA 258
+++++N + G+ ++VN A
Sbjct: 62 SLAAMNGRKIMGKEVKVNWA 81
>gi|89272716|emb|CAJ83609.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 15/187 (8%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
+ R +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 DLPRTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVD-------LSLLQAEDSNFVDSPYKVYVGNLAK 191
+ +NG +I G+E+KVN P Q +S L+++D + V+VG+L+
Sbjct: 62 SLAAMNGRKIMGKEVKVNWATTPSSQKKDANSSSVVSTLRSQDH------FHVFVGDLSP 115
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
+T++ +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI+ + L G+
Sbjct: 116 EITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGR 175
Query: 252 RIRVNKA 258
+IR N A
Sbjct: 176 QIRTNWA 182
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I D++ G + A V+ D TG+S+ + FV DA I +
Sbjct: 107 HVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQ 166
Query: 143 LNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L E+ SP VY G + +T
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLTYEEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FSS E A AI S+N + +EG ++
Sbjct: 227 EQLMRQTFSPFGQIMEVRVF------PDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280
Query: 255 V 255
Sbjct: 281 C 281
>gi|448521353|ref|XP_003868484.1| Pub1 protein [Candida orthopsilosis Co 90-125]
gi|380352824|emb|CCG25580.1| Pub1 protein [Candida orthopsilosis]
Length = 426
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P++ ++++K+ ++ +++ DK +AF+ +DA+ + L
Sbjct: 61 LYVGNLPKSASEEQISKLFSVSKPIKSIKLLNDK-NKLGFNYAFIEFDENQDADMALSTL 119
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + EIKVN + S A +S D Y V+VG+L+ V E LKK F+
Sbjct: 120 NGKLLNNCEIKVNWAYQ-------SATIASNSTPEDPTYNVFVGDLSSEVNDEALKKAFN 172
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ A V+ TS+S G+GFVTF +EDAE A+ ++N L G+ IR N A
Sbjct: 173 KFDSFKEAHVMWDMQTSRSRGYGFVTFGKQEDAELALQTMNGEWLGGRAIRCNWA 227
>gi|356520229|ref|XP_003528766.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 277
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 10/174 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+PR D L + + +G + EV D T S+ +V + ++ A + L
Sbjct: 95 VYVCNLPRRCDATYLLDMFRPYGTILSVEVCRDAETNESKGCGYVTLGSIYSARNAVAAL 154
Query: 144 NGTEIGGREIKV------NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+G+++GGRE++V N + +++ S + ++ +SP+K+YVGNLAKTV E
Sbjct: 155 DGSDVGGRELRVRFSIEMNSKRRSFNKMNSSTKRI---SYYESPHKLYVGNLAKTVRPEQ 211
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
L+ FS G V+SA+VL S + F++F SE + +AA+ SLN + G+
Sbjct: 212 LRDLFSRFGNVVSARVLHDFKQGNSRVYAFLSFQSEAERDAAM-SLNGTEYYGR 264
>gi|348522243|ref|XP_003448635.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Oreochromis niloticus]
Length = 387
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I D T + + FV A A +
Sbjct: 8 RTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVD--TAGNDPYCFVEFYDHRHAAASLA 65
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 66 AMNGRKIMGKEVKVNWATTPTSQ------KKDTSNH----FHVFVGDLSPEITTEDVKAA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 116 FGPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQHMGGQWLGGRQIRTNWA 172
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ +S DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 84 TPTSQKKDTSNHF--HVFVGDLSPEITTEDVKAAFGPFGRISDARVVKDMATGKSKGYGF 141
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+ + G +GGR+I+ N T KP + D + Q+
Sbjct: 142 VSFFNKWDAENAIQHMGGQWLGGRQIRTNWATRKPPAPKTTHENNSKHLSFDEVVNQSSP 201
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G ++ +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 202 SNCT-----VYCGGVSTGLTEQLMRQTFSPFGQIMEVRVF------PDKGYSFVRFNSHE 250
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N S +EG ++
Sbjct: 251 SAAHAIVSVNGSSIEGHIVKC 271
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D P +YVGNL++ VT ++ + F++ G S K++ T+ + + FV F A A
Sbjct: 5 DQPRTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIV--DTAGNDPYCFVEFYDHRHAAA 62
Query: 239 AISSLNNSLLEGQRIRVNKA 258
+++++N + G+ ++VN A
Sbjct: 63 SLAAMNGRKIMGKEVKVNWA 82
>gi|296089011|emb|CBI38714.3| unnamed protein product [Vitis vinifera]
Length = 166
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 101 IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TE 159
+ + HG V+ EV + TG SR +V M ++ +A A I L+G+++GGRE++V T+
Sbjct: 1 MFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTD 60
Query: 160 KPLVQVDLSLLQ-AEDSNFV-DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVP 217
+ + L A N + +SPYK+YVGNLA + E L+ FS+ G V+SA+V+
Sbjct: 61 MNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDR 120
Query: 218 GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
K +GF++FSS + EAA+ SLN G+ + V
Sbjct: 121 KAGKHRAYGFLSFSSAAECEAAM-SLNGKEFRGRSLVV 157
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+ I ++L + G V A V++D+ G+ R + F+ + + A +
Sbjct: 86 KLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMS- 144
Query: 143 LNGTEIGGREIKVNITEK 160
LNG E GR + V+ K
Sbjct: 145 LNGKEFRGRSLVVSAGMK 162
>gi|294933824|ref|XP_002780863.1| single-stranded G-strand telomeric DNA-binding protein, putative
[Perkinsus marinus ATCC 50983]
gi|239890990|gb|EER12658.1| single-stranded G-strand telomeric DNA-binding protein, putative
[Perkinsus marinus ATCC 50983]
Length = 381
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 15/211 (7%)
Query: 56 TTRLFAVAEETAS----SSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKA 111
T++L A E + SS D + R++++G IP +D+ + + G VE++
Sbjct: 43 TSQLSGKATEQGNTPSFSSGGHGDRGFDDRRQLFVGGIPEGFTDDDFHRYFSQFGNVERS 102
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT-EIGGREIKVNITEKP------LVQ 164
V+ DK TGR R F FV T + + NG ++ G+ + VN ++ P
Sbjct: 103 IVMTDKMTGRCRGFGFVTYATTGEVENCL--ANGPHQLNGKHVDVNRSQDPKDAHKGGWG 160
Query: 165 VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG 224
D S + D P KV+ G L + +E L++ FS+ G ++ +R T +S G
Sbjct: 161 SDRSGGPSRRGGGGDDPKKVFCGGLPQDCDTERLRQHFSQYGNIVDCIAMRDRDTGRSKG 220
Query: 225 FGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+GFVTF SE+ AAI+ N ++G+ + V
Sbjct: 221 YGFVTFDSEDAVNAAINGDN--TIDGRWVEV 249
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 7/179 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N N+D+ LT+I ++G +V+ D GRS+ F FV ++ EDA A ++ +
Sbjct: 227 IYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDD-CGRSKGFGFVSFQSHEDAQAAVDDM 285
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVD-SPYKVYVGNLAKTVTSEMLK 199
NG ++ G++I V +K ++ Q + + + +Y+ NL T+ E L+
Sbjct: 286 NGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHLR 345
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K FS G + SAKV+ G SK GFGFV FSS +DA A +N L+ + + V+ A
Sbjct: 346 KEFSPFGTITSAKVMMENGRSK--GFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLA 402
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N+ ++IDN L G + +VI D+ S+ + FV +T E A IEK+
Sbjct: 135 VFVKNLEKSIDNKALYDTFSTFGRILSCKVISDE--NGSKGYGFVHFETQESAGKAIEKM 192
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + +KV + + S L + ++ + +Y+ N + + + L + F+
Sbjct: 193 NGMLL--NNLKVFVGRFKSRRERESELGVKAKDYTN----IYIKNFGENMDDQRLTEIFA 246
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ +S GFGFV+F S EDA+AA+ +N L G++I V +A
Sbjct: 247 KYGPTLSVKVM-TDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRA 300
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
S S TP+ +Y+G++ ++ L + G + V D T S +A+
Sbjct: 31 SGGSHGHSTPNSPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAY 90
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V + A V+ +N I G I++ +++ Q + V+V
Sbjct: 91 VNFQHRAHAEWVLATMNLDVIKGNPIRIMWSQRDPGQRKRGV------------GNVFVK 138
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL K++ ++ L FS G++LS KV+ SK G+GFV F ++E A AI +N L
Sbjct: 139 NLEKSIDNKALYDTFSTFGRILSCKVISDENGSK--GYGFVHFETQESAGKAIEKMNGML 196
Query: 248 LEGQRIRVNK 257
L ++ V +
Sbjct: 197 LNNLKVFVGR 206
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ I+++ L K G + A+V+ + GRS+ F FV + +DA ++
Sbjct: 330 LYIKNLDDTINDEHLRKEFSPFGTITSAKVMME--NGRSKGFGFVCFSSSKDAAKASREM 387
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V++ ++
Sbjct: 388 NGKLVASKPLYVSLAQR 404
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D TG+SR F FV + EDAN +E +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDM 251
Query: 144 NGTEIGGREIKVNITEK-----PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NGTE+ G+ + V +K ++ +L+ E + +Y+ NL T+ E L
Sbjct: 252 NGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQG-VNLYIKNLDDTIDDEKL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P T KS GFGFV++ EDA A+ +N + L G+ + V +A
Sbjct: 212 DKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRA 266
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L +T ML + FS G VLS +V R T +S G+ +V FS DAE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVVKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ ++ GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|412986787|emb|CCO15213.1| predicted protein [Bathycoccus prasinos]
Length = 260
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++YIGN+ ++D+ L + ++ A + ++ D+ TGRSR F F + + E A++ I
Sbjct: 75 KLYIGNLSWDMDDQALNDLFSQYQASDCV-IVTDRNTGRSRGFGFATVPSQEMADSAIAA 133
Query: 143 LNGTEIGGREIKVNIT----EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
LN ++ GR+++V I+ E+P + Q N+ KVY GNL+ + L
Sbjct: 134 LNDSDQFGRQMRVVISLPPEERPARE------QRPKRNWDADGRKVYFGNLSWGMDHLDL 187
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ +E G V ++++ T +S GFGFVT SSE++AE ++ LN ++G+ +RVN A
Sbjct: 188 QDLCAEFGNVDESRLITDRETGRSRGFGFVTMSSEKEAEDVVAQLNGQDVDGRVLRVNIA 247
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R+VY GN+ +D+ +L + E G V+++ +I D+ TGRSR F FV M + ++A V+
Sbjct: 170 GRKVYFGNLSWGMDHLDLQDLCAEFGNVDESRLITDRETGRSRGFGFVTMSSEKEAEDVV 229
Query: 141 EKLNGTEIGGREIKVNI 157
+LNG ++ GR ++VNI
Sbjct: 230 AQLNGQDVDGRVLRVNI 246
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 97/170 (57%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +++++L ++ +++G +V+ D +G+SR F FV + EDAN +E++
Sbjct: 193 VYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDS-SGKSRGFGFVSFEKHEDANKAVEEI 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NGTE+ G+ + V +K + ++ LL+ E + +Y+ NL T+ E L
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQG-VNLYIKNLDDTIDDEKL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDEMEDEQLKEMF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ + KS GFGFV+F EDA A+ +N + L G+ + V +A
Sbjct: 212 EKYGKTLSVKVM-TDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRA 266
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L +T ML + FS G VLS +V R T +S G+ +V FS DAE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVVKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D TG+SR F FV + EDAN +E +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDM 251
Query: 144 NGTEIGGREIKVNITEK-----PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NGTE+ G+ + V +K ++ +L+ E + +Y+ NL T+ E L
Sbjct: 252 NGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQG-VNLYIKNLDDTIDDEKL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P T KS GFGFV++ EDA A+ +N + L G+ + V +A
Sbjct: 212 DKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRA 266
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L +T ML + FS G VLS +V R T +S G+ +V FS DAE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVVKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ ++ GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|354544201|emb|CCE40924.1| hypothetical protein CPAR2_109610 [Candida parapsilosis]
Length = 475
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 112/211 (53%), Gaps = 6/211 (2%)
Query: 48 KTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGA 107
K +E +TT + A+ +++++++ + P+ V+ G + NID+D L + +
Sbjct: 205 KIEELESTTTPDYKKAKSESTTTTATDEEPAT----VFAGRLSWNIDDDWLKREFEHLEG 260
Query: 108 VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL 167
V A VI ++ TG+SR + +V + A IE++ G EI GR I ++++
Sbjct: 261 VIGARVIMERATGKSRGYGYVDFTSKAAAEKAIEEMQGREIDGRPINLDLSTGRPHATKP 320
Query: 168 SLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
+ +A+ SP +++GNL+ + L + F E G V+S ++ P T + GF
Sbjct: 321 NNDRAKQFGDQQSPPSDTLFIGNLSFNANRDKLFEIFGEYGNVISCRLPTHPDTQQPKGF 380
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G+V F S ++A+AA+ +LN LEG+ R++
Sbjct: 381 GYVQFGSVDEAKAALEALNGEYLEGRPCRLD 411
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ N + D+L +I E+G V + T + + F +V +V++A A +E L
Sbjct: 339 LFIGNLSFNANRDKLFEIFGEYGNVISCRLPTHPDTQQPKGFGYVQFGSVDEAKAALEAL 398
Query: 144 NGTEIGGREIKVNIT 158
NG + GR +++ +
Sbjct: 399 NGEYLEGRPCRLDFS 413
>gi|380748929|ref|NP_001244132.1| nucleolysin TIAR isoform 2 [Gallus gallus]
gi|28883273|gb|AAO49720.1| TIA-1 [Gallus gallus]
Length = 372
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A +
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAS 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDSNFVDSP 181
V DA I+++ G +GGR+I+ N T KP + + L +D SP
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSP 200
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G + +T +++++ FS GQ++ +V G+ FV F+S E A A
Sbjct: 201 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHESAAHA 254
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 255 IVSVNGTTIEGHVVKC 270
>gi|255760009|ref|NP_001157550.1| nucleolysin TIA-1 isoform 2 [Mus musculus]
gi|28386187|gb|AAH46812.1| Tia1 protein [Mus musculus]
Length = 377
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAA 63
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 64 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 113
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 114 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 173
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 85 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 142
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 143 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSP 202
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
+N VY G + +T +++++ FS GQ++ +V G+ FV FSS E
Sbjct: 203 NNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSSHE 251
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 252 SAAHAIVSVNGTTIEGHVVKC 272
>gi|148666754|gb|EDK99170.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_d
[Mus musculus]
Length = 385
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 12 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAA 71
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 72 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 121
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 122 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 181
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 93 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 150
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 151 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSP 210
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
+N VY G + +T +++++ FS GQ++ +V G+ FV FSS E
Sbjct: 211 NNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSSHE 259
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 260 SAAHAIVSVNGTTIEGHVVKC 280
>gi|297823333|ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
gi|297325388|gb|EFH55808.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 15/233 (6%)
Query: 33 LQIRFPKLSYSLHNLKTASIEDSTTRLFAV----------AEETASSSSSSVDT-PSEFA 81
L +R P + +L++ D++ RL +V AEE S + +T S
Sbjct: 37 LSLRLPSNLSPVFSLRSGG--DNSRRLVSVLCSVAEKETSAEEETSQEEKTEETQKSNLK 94
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R++++ N+P ++ ++++++ + G V E+I K G++R FAFV M + E+A A I+
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAID 153
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
K + +++ GR I VN + D+ +K+YV NLA S L++
Sbjct: 154 KFDTSQVSGRIISVNFARRFKKPTPKPPNDLPSPPPGDTRHKLYVSNLAWKARSTHLREL 213
Query: 202 FSEKG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
F+ +SA+V+ +SSG+GFV+F++ E+AE AI+ L+ + G+ I
Sbjct: 214 FTASDFNPVSARVVFADPEGRSSGYGFVSFATREEAEDAIAKLDGKEIMGRPI 266
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K++V NL +++ + + F + G V + +++R K+ GF FVT +S E+A+AAI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAIDK 154
Query: 243 LNNSLLEGQRIRVNKA 258
+ S + G+ I VN A
Sbjct: 155 FDTSQVSGRIISVNFA 170
>gi|226499642|ref|NP_001147738.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195613392|gb|ACG28526.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414585685|tpg|DAA36256.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 272
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 10/222 (4%)
Query: 36 RFPKLSYSLHNLKTASIED-STTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNID 94
R P + L L+ ++ + R+ A + A ++ + D E R++Y+ N+P +
Sbjct: 19 RVPHFALPLLTLRCPRRQNQARLRVAASSPPEAQAAPVAEDEQGEKRRKLYVANLPWSFP 78
Query: 95 NDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154
E+ K+ +HG V+ EVI K GR+R FAFV M T E+A A +KLN ++ GR IK
Sbjct: 79 APEIEKLFAQHGTVKDVEVIKGK-DGRNRGFAFVTMSTAEEAAAAADKLNSHDVMGRTIK 137
Query: 155 VNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVL 214
V ++ ++ +K+YV NL + +K+ F+ LSA V+
Sbjct: 138 VEFSK----SFRRPAPPPPPGTIIER-HKLYVSNLPWKARAPNVKEFFA-NFNPLSANVI 191
Query: 215 RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G K++G+GFV+F ++E+AEAA++ L+ L G+ +R+N
Sbjct: 192 FDNG--KAAGYGFVSFGTKEEAEAALTELDGKELLGRPVRLN 231
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+P + + + A VI+D G++ + FV T E+A A + +
Sbjct: 161 KLYVSNLPWKARAPNVKEFFANFNPL-SANVIFD--NGKAAGYGFVSFGTKEEAEAALTE 217
Query: 143 LNGTEIGGREIKVNITE 159
L+G E+ GR +++N E
Sbjct: 218 LDGKELLGRPVRLNWRE 234
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 11/180 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+P D+ +LT++ EHG+V + D+ G+SR+F FV +T E A V+EKL
Sbjct: 179 VFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDE-NGKSRQFGFVSFETHECAEKVVEKL 237
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ E G++I V +K ++V L+ E + +YV NL ++T ++L
Sbjct: 238 HDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQG-VNLYVKNLDDSITDDIL 296
Query: 199 KKCFSEKGQVLSAKVLR---VPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ F+ G + S+KV+ V GT +S GFGFV F+S E+A A++ +N ++ + + V
Sbjct: 297 REHFAPYGNITSSKVMTDTDVEGT-RSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYV 355
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L T ML FS+ G VLS +V R T +S G+ +V F EDAE AI ++
Sbjct: 13 LYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTM 72
Query: 244 N 244
N
Sbjct: 73 N 73
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 120 GRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD 179
G S+ + FV +T E A IEKL+G + +++ V + +V E +
Sbjct: 121 GESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVR------EYGDRAK 174
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
V++ NL L + F E G V+S L KS FGFV+F + E AE
Sbjct: 175 QFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSV-ALATDENGKSRQFGFVSFETHECAEKV 233
Query: 240 ISSLNNSLLEGQRIRVNKA 258
+ L++ EG++I V +A
Sbjct: 234 VEKLHDKEFEGKKIFVGRA 252
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 38/186 (20%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ L + G V V D T RS +A+V + EDA
Sbjct: 6 PSYPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
I+ +N +Q+ ++L A S +KT T
Sbjct: 66 ERAIDTMN-----------------FIQLSVNLASAISS--------------SKTWTRL 94
Query: 197 MLKKC----FSEKGQVLSAKV-LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
KC FS G +LS KV + + G SK G+GFV F +EE A AI L+ L+ +
Sbjct: 95 STTKCCTIPFSAFGNILSCKVNVNLAGESK--GYGFVHFETEEAAVKAIEKLDGMLMNDK 152
Query: 252 RIRVNK 257
++ V +
Sbjct: 153 KVFVGR 158
>gi|410922589|ref|XP_003974765.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Takifugu rubripes]
Length = 386
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I D T + + FV A A +
Sbjct: 7 RTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVD--TAGNDPYCFVEFYEHRHAAASLA 64
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T++ +K
Sbjct: 65 AMNGRKIMGKEVKVNWATTPTSQ------KKDTSNH----FHVFVGDLSPEITTDDVKAA 114
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 115 FGPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ +S DT + F V++G++ I D++ G + A V+ D TG+S+ + F
Sbjct: 83 TPTSQKKDTSNHF--HVFVGDLSPEITTDDVKAAFGPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQ------------VDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKTTYESNSKQLCFDDVVNQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G ++ +T +++++ FS G ++ +V G+ FV F+S E
Sbjct: 201 SNCT-----VYCGGVSTGLTEQLMRQTFSPFGPIMEIRVF------PDKGYSFVRFNSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N S +EG ++
Sbjct: 250 SAAHAIVSVNGSSIEGHVVKC 270
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D P +YVGNL++ VT ++ + F++ G S K++ T+ + + FV F A A
Sbjct: 4 DQPRTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIV--DTAGNDPYCFVEFYEHRHAAA 61
Query: 239 AISSLNNSLLEGQRIRVNKA 258
+++++N + G+ ++VN A
Sbjct: 62 SLAAMNGRKIMGKEVKVNWA 81
>gi|308807591|ref|XP_003081106.1| Ps16 protein (ISS) [Ostreococcus tauri]
gi|116059568|emb|CAL55275.1| Ps16 protein (ISS) [Ostreococcus tauri]
Length = 1094
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ + ++ L ++ E V A V+ D+ TGRSR FAFV M ED
Sbjct: 915 RVYVGNLSWGVTDESLAELFSEFD-VRDASVMKDRETGRSRGFAFVSMNNEEDVERASAA 973
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLKK 200
LNG E+ GRE++V+ + + + + D +VY GNL+ + L+
Sbjct: 974 LNGREVDGRELRVSKAQAQAERGERPMRMPRQRRDFDQAEGRRVYFGNLSWGMDQYDLQD 1033
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G V ++++ T +S GFGFVT S+ +A+ ++ LN ++G+ +RVN A
Sbjct: 1034 LCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVAQLNGQDVDGRVLRVNIA 1091
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
RRVY GN+ +D +L + E G+VE + +I D+ TGRSR F FV M +A+ V+
Sbjct: 1014 GRRVYFGNLSWGMDQYDLQDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVV 1073
Query: 141 EKLNGTEIGGREIKVNI 157
+LNG ++ GR ++VNI
Sbjct: 1074 AQLNGQDVDGRVLRVNI 1090
>gi|255730137|ref|XP_002549993.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131950|gb|EER31508.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 442
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + NID+D L + + G V A VI ++ TG+SR + +V + A + ++
Sbjct: 217 LFVGRLSWNIDDDWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFEGKSFAEKALAEM 276
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKK 200
G EI GR I +++ T KP S +A+ SP +++GNL+ + L
Sbjct: 277 QGKEIDGRPINLDMSTGKP--HASKSNDRAKQFGDSQSPPSDTLFIGNLSFNANRDGLFN 334
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F E G V+S ++ P T + GFG+V FSS ++A+AA+ +LN +EG+ R++
Sbjct: 335 TFGEYGNVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGQYIEGRPCRLD 390
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 63 AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
A++ S S DT ++IGN+ N + D L E+G V + T +
Sbjct: 304 AKQFGDSQSPPSDT-------LFIGNLSFNANRDGLFNTFGEYGNVISCRIPTHPDTQQP 356
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158
+ F +V +V++A A +E LNG I GR +++ +
Sbjct: 357 KGFGYVQFSSVDEAKAALEALNGQYIEGRPCRLDFS 392
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + NID++ L + + G V A VI ++ TG+SR + +V + A + ++
Sbjct: 177 LFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEKALVEM 236
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I +++ T KP S F D+P +++GNL+ + L
Sbjct: 237 QGKEIDGRPINLDMSTGKPHA----SKSNDRAKQFGDTPSAPSDTLFIGNLSFNAQRDNL 292
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F + G V+S ++ P T + GFG+V FSS ++A+AA+ +LN +EG+ R++
Sbjct: 293 FEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGRACRLD 350
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPS + ++IGN+ N D L +I +HG V + T + + F +V +V+
Sbjct: 269 DTPSAPSDTLFIGNLSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVD 328
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A A +E LNG I GR +++ +
Sbjct: 329 EAKAALEALNGEYIEGRACRLDFS 352
>gi|226288243|gb|EEH43755.1| 28 kDa ribonucleoprotein [Paracoccidioides brasiliensis Pb18]
Length = 492
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 4/177 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ N+D + L +E G + ++ D+ TGRS+ F +V EDA
Sbjct: 249 LFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDTGRSKGFGYVEFTNAEDAVKAHAAK 308
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK--VYVGNLAKTVTSEMLK 199
TE+ GR++ V+ Q+ NF D SP +++GN+A + M+
Sbjct: 309 KDTELDGRKLNVDFANARSNAAPRDRAQSRAQNFGDQRSPESDTLFIGNIAFSADENMIS 368
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F+E G +L ++ P + + GFG+V FSS ++A +A SLN S L G+ +R++
Sbjct: 369 ETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESLNGSELAGRAMRLD 425
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Query: 171 QAEDSNFVDSPYK----------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS 220
+AED V +P K +++GNL+ V E L+ F E G++ +++ T
Sbjct: 226 KAEDEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDTG 285
Query: 221 KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+S GFG+V F++ EDA A ++ ++ L+G+++ V+
Sbjct: 286 RSKGFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVD 321
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 46/75 (61%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGNI + D + +++ E+G++ + D +GR + F +V ++++A + E L
Sbjct: 353 LFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESL 412
Query: 144 NGTEIGGREIKVNIT 158
NG+E+ GR ++++ +
Sbjct: 413 NGSELAGRAMRLDFS 427
>gi|440297981|gb|ELP90622.1| nucleolysin TIA-1, putative [Entamoeba invadens IP1]
Length = 305
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 14/180 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P E ++ V++ + ++D L++I G V +++ DK TG R+ F+ A
Sbjct: 34 PFENSKSVHVAGLHESVDETLLSRIFSIVGHVVSCKIMKDK-TGTHARYGFIEFIDHTTA 92
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
E +NG + G+E+KVN T Q D +K++VG L VT+E
Sbjct: 93 EFAKENMNGRLVYGKELKVNWTHDS--QSD-----------AKGSFKLFVGGLHTEVTNE 139
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+L + F++ G+V A+VLR + KS G+GFVTF +EDAE A+ +N ++G+ ++VN
Sbjct: 140 ILYQNFAKFGRVSDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKVN 199
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 11/173 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++G + + N+ L + + G V A V+ +G+S+ + FV EDA ++
Sbjct: 126 KLFVGGLHTEVTNEILYQNFAKFGRVSDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQM 185
Query: 143 LNGTEIGGREIKVNI---TEKPL--VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+NG +I GR +KVN T+KP V+ + E SN + VYVG + K
Sbjct: 186 MNGEKIQGRTVKVNWGTATQKPTETVKRGFDEISRETSN---TNNNVYVGGIPKETEEST 242
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250
++K F + G+++ K++R T +GFV F S ++A AI LN L G
Sbjct: 243 MRKLFGDFGEIIDLKIMR---TDAEKAYGFVRFVSHDNATKAIMMLNGYQLNG 292
>gi|302673016|ref|XP_003026195.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
gi|300099876|gb|EFI91292.1| hypothetical protein SCHCODRAFT_45556 [Schizophyllum commune H4-8]
Length = 218
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 22/185 (11%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G +P ++DND L + + G +E A V+ D+ TG SR F +V T E A E++
Sbjct: 5 VFVGGLPFDVDNDRLQQEFAKFGDIESAIVMMDRQTGNSRGFGYVHFATHEQAKKAKEEM 64
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN-----FVDSPYK----VYVGNLAKTVT 194
+G E+ GR I+ KP + A D + F D P + ++VGNL+ + T
Sbjct: 65 DGYELDGRNIRTGTATKPQPK------GAHDPSSRARQFGDKPSEPSSTLFVGNLSWSAT 118
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPG---TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
+ + F+E G K +R+P T + GFG+V F E A+ A +L + L+G+
Sbjct: 119 EDAVWGLFNEYG----VKNVRLPTEFETGRPKGFGYVEFEDIEGAKKAYEALAGAELDGR 174
Query: 252 RIRVN 256
IR++
Sbjct: 175 NIRLD 179
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
V+VG L V ++ L++ F++ G + SA V+ T S GFG+V F++ E A+ A +
Sbjct: 5 VFVGGLPFDVDNDRLQQEFAKFGDIESAIVMMDRQTGNSRGFGYVHFATHEQAKKAKEEM 64
Query: 244 NNSLLEGQRIRVNKA 258
+ L+G+ IR A
Sbjct: 65 DGYELDGRNIRTGTA 79
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 63 AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
A + +S + D PSE + +++GN+ + D + + E+G V+ + + TGR
Sbjct: 87 AHDPSSRARQFGDKPSEPSSTLFVGNLSWSATEDAVWGLFNEYG-VKNVRLPTEFETGRP 145
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
+ F +V + +E A E L G E+ GR I+++ ++
Sbjct: 146 KGFGYVEFEDIEGAKKAYEALAGAELDGRNIRLDYSQ 182
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +++++ L ++ ++G +V+ D TG+SR F F+ + EDAN +E +
Sbjct: 193 VYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDP-TGKSRGFGFISYEKHEDANKAVEDM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NGTE+ G+ + V +K + ++ +L+ E + +Y+ NL T+ E L
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQG-VNLYIKNLDDTIDDEKL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMNDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P T KS GFGF+++ EDA A+ +N + L G+ + V +A
Sbjct: 212 DKYGKTLSVKVMTDP-TGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRA 266
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L +T ML + FS G VLS +V R T +S G+ +V FS DAE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVVKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ ++ GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|321249350|ref|XP_003191429.1| single-stranded DNA binding protein [Cryptococcus gattii WM276]
gi|317457896|gb|ADV19642.1| single-stranded DNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 442
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G + N+DND L + G V A V++D+ + +SR F +V +E + IEK
Sbjct: 196 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLEASAKAIEK- 254
Query: 144 NGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLK 199
+G+EI GR I+VN KP + + +A+ N SP +++G+L+ +VT + +
Sbjct: 255 DGSEIDGRAIRVNYATQRKPN---EAAEKRAKVFNDKQSPPAETLWIGSLSFSVTEDQVY 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F + G V S ++ T GFG+V FSS EDA AA+ ++N + + G+ IRV+
Sbjct: 312 EAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDASAALKAMNGAEIAGRAIRVD 368
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D S A ++IG++ ++ D++ + +HG V+ + D+ TG + F +V +VE
Sbjct: 287 DKQSPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVE 346
Query: 135 DANAVIEKLNGTEIGGREIKVNI 157
DA+A ++ +NG EI GR I+V+
Sbjct: 347 DASAALKAMNGAEIAGRAIRVDF 369
>gi|357128483|ref|XP_003565902.1| PREDICTED: uncharacterized protein LOC100828680 [Brachypodium
distachyon]
Length = 357
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+ +ID++ L ++ + G VE +E++YD+ TG+SR + +V M TVE+A +
Sbjct: 209 LYVGNLRHHIDDEYLAQLFENVGIVEFSEILYDRETGQSRGYGYVTMSTVEEAEMAVNTF 268
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
+ E+ G+ L ++ + SP +++VGNL V ML FS
Sbjct: 269 HRRELYGK---------------LMTVEMRSPHQHRSPVRIFVGNLPCEVDGSMLNLLFS 313
Query: 204 EKGQVLSAKVL--RVPGTSKSSGFGFVTFSSEEDAEAAI 240
E GQV+ KV V G +S FGFVT ++ E+++ AI
Sbjct: 314 EHGQVVDTKVAYGYVKGVWRSRRFGFVTMATREESDDAI 352
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG--RSRRFAFVMMKTVEDANAVI 140
R+++GN+P +D L + EHG V +V Y G RSRRF FV M T E+++ I
Sbjct: 293 RIFVGNLPCEVDGSMLNLLFSEHGQVVDTKVAYGYVKGVWRSRRFGFVTMATREESDDAI 352
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVGNL + E L + F G V +++L T +S G+G+VT S+ E+AE A+++
Sbjct: 209 LYVGNLRHHIDDEYLAQLFENVGIVEFSEILYDRETGQSRGYGYVTMSTVEEAEMAVNTF 268
Query: 244 NNSLLEGQRIRV 255
+ L G+ + V
Sbjct: 269 HRRELYGKLMTV 280
>gi|170592088|ref|XP_001900801.1| RNA recognition motif. [Brugia malayi]
gi|158591668|gb|EDP30272.1| RNA recognition motif [Brugia malayi]
Length = 421
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 68 SSSSSSVDTPSEF--ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
++ ++ DT SE R VY+GN+ +I D +T + + GAV K +VI+D G + +
Sbjct: 58 AAQNAGFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFD---GTNDPY 114
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVY 185
AFV A ++ +N + +E+KVN +P Q + + + V+
Sbjct: 115 AFVEFADHYTAAQALQAMNKRVLLEKEMKVNWATEPGSQAKVDTSKH---------FHVF 165
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
VG+L+ V ++ LK F+ G+V AKV+R T KS G+GFV++ E+AE AI +N
Sbjct: 166 VGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNG 225
Query: 246 SLLEGQRIRVNKA 258
L + IR N A
Sbjct: 226 QWLGRRTIRTNWA 238
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 66 TASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
T S + VDT F V++G++ +DN L G V A+VI D T +S+ +
Sbjct: 148 TEPGSQAKVDTSKHF--HVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGY 205
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV------QVDLSLLQAEDSNFV 178
FV E+A IE++NG +G R I+ N T KP Q S L +D
Sbjct: 206 GFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTGAGDGQYGRSELNYDDVYNQ 265
Query: 179 DSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
P VYVGN+ + E L+ F + G++L ++ KS G+ FV F ++ A
Sbjct: 266 TGPDNTSVYVGNVNSSANDEDLRAAFDKFGRILEVRIF------KSQGYAFVRFDKKDSA 319
Query: 237 EAAISSLNNSLLEGQRIRV 255
AI +N L GQ I+
Sbjct: 320 CNAICKMNGQELCGQNIKC 338
>gi|410298560|gb|JAA27880.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 388
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 1/181 (0%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAA 63
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 64 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 123
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 124 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 183
Query: 258 A 258
A
Sbjct: 184 A 184
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 88 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 147
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 148 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 207
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 208 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 256
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 257 RFNSHESAAHAIVSVNGTTIEGHVVKC 283
>gi|255075095|ref|XP_002501222.1| predicted protein [Micromonas sp. RCC299]
gi|226516486|gb|ACO62480.1| predicted protein [Micromonas sp. RCC299]
Length = 199
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E A+ ++V E ++Y+GN+ + ND L + ++GA + V+ D TGRSR
Sbjct: 2 EAAAEDGAAV--SGEEGVKLYVGNLSWGVTNDSLADVFNQYGASD-VTVVTDMNTGRSRG 58
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT---EKPLVQVDLSLLQAEDSNFVDSP 181
F FV + A+A I L+G ++ GR I+VN++ E + D + +
Sbjct: 59 FGFVTVPDQAVADACIAALDGADVDGRAIRVNVSVAREDRPPRPDRPPRDGQRRGYDFDG 118
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
KVY GNL+ + L+ E G V A+++ T++S GFGFVT S+ +AE ++
Sbjct: 119 RKVYFGNLSWGMDHLDLQDLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVN 178
Query: 242 SLNNSLLEGQRIRVNKA 258
LN ++G+ +RVN A
Sbjct: 179 QLNGQDVDGRVLRVNIA 195
>gi|393909208|gb|EFO19127.2| hypothetical protein LOAG_09365 [Loa loa]
Length = 421
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 68 SSSSSSVDTPSEF--ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
++ ++ DT SE R VY+GN+ +I D +T + + GAV K +VI+D G + +
Sbjct: 58 AAQNAGFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFD---GTNDPY 114
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ--VDLSLLQAEDSNFVDSPYK 183
AFV A ++ +N + +E+KVN +P Q VD S +
Sbjct: 115 AFVEFADHYTAAQALQAMNKRVLLEKEMKVNWATEPGSQAKVDTS-----------KHFH 163
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
V+VG+L+ V ++ LK F+ G+V AKV+R T KS G+GFV++ E+AE AI +
Sbjct: 164 VFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQM 223
Query: 244 NNSLLEGQRIRVNKA 258
N L + IR N A
Sbjct: 224 NGQWLGRRTIRTNWA 238
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 66 TASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
T S + VDT F V++G++ +DN L G V A+VI D T +S+ +
Sbjct: 148 TEPGSQAKVDTSKHF--HVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGY 205
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV------QVDLSLLQAEDSNFV 178
FV E+A IE++NG +G R I+ N T KP Q + L +D
Sbjct: 206 GFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTGAGDGQYGRTELNYDDVYNQ 265
Query: 179 DSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
P VYVGN+ + E L+ F + G++L ++ KS G+ FV F ++ A
Sbjct: 266 TGPDNTSVYVGNVNSSANDEDLRAAFDKFGRILEVRIF------KSQGYAFVRFDKKDSA 319
Query: 237 EAAISSLNNSLLEGQRIRV 255
AI +N L GQ I+
Sbjct: 320 CNAICKMNGQELCGQNIKC 338
>gi|312086091|ref|XP_003144941.1| hypothetical protein LOAG_09365 [Loa loa]
Length = 394
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 68 SSSSSSVDTPSEF--ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
++ ++ DT SE R VY+GN+ +I D +T + + GAV K +VI+D G + +
Sbjct: 31 AAQNAGFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFD---GTNDPY 87
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ--VDLSLLQAEDSNFVDSPYK 183
AFV A ++ +N + +E+KVN +P Q VD S +
Sbjct: 88 AFVEFADHYTAAQALQAMNKRVLLEKEMKVNWATEPGSQAKVDTS-----------KHFH 136
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
V+VG+L+ V ++ LK F+ G+V AKV+R T KS G+GFV++ E+AE AI +
Sbjct: 137 VFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQM 196
Query: 244 NNSLLEGQRIRVNKA 258
N L + IR N A
Sbjct: 197 NGQWLGRRTIRTNWA 211
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 66 TASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
T S + VDT F V++G++ +DN L G V A+VI D T +S+ +
Sbjct: 121 TEPGSQAKVDTSKHF--HVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGY 178
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV------QVDLSLLQAEDSNFV 178
FV E+A IE++NG +G R I+ N T KP Q + L +D
Sbjct: 179 GFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTGAGDGQYGRTELNYDDVYNQ 238
Query: 179 DSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
P VYVGN+ + E L+ F + G++L ++ KS G+ FV F ++ A
Sbjct: 239 TGPDNTSVYVGNVNSSANDEDLRAAFDKFGRILEVRIF------KSQGYAFVRFDKKDSA 292
Query: 237 EAAISSLNNSLLEGQRIRV 255
AI +N L GQ I+
Sbjct: 293 CNAICKMNGQELCGQNIKC 311
>gi|238879474|gb|EEQ43112.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 399
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + NID+ L + + G V A VI ++ TG+SR + +V ++ A +E++
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKC 201
G EI GR I +++ T KP + + + P +++GNL+ + L
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNV 289
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F E G V+S +V P T + GFG+V FSS ++A+AA+ ++N +EG+ R++
Sbjct: 290 FGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 63 AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
A++ S S DT ++IGN+ N + D L + E+G V V T +
Sbjct: 258 AKQYGDSQSPPSDT-------LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQP 310
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158
+ F +V +V++A A +E +NG I GR +++ +
Sbjct: 311 KGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFS 346
>gi|68473894|ref|XP_719050.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|68474099|ref|XP_718946.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440741|gb|EAL00044.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440849|gb|EAL00151.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
Length = 400
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + NID+ L + + G V A VI ++ TG+SR + +V ++ A +E++
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKC 201
G EI GR I +++ T KP + + + P +++GNL+ + L
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNV 289
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F E G V+S +V P T + GFG+V FSS ++A+AA+ ++N +EG+ R++
Sbjct: 290 FGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 63 AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
A++ S S DT ++IGN+ N + D L + E+G V V T +
Sbjct: 258 AKQYGDSQSPPSDT-------LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQP 310
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158
+ F +V +V++A A +E +NG I GR +++ +
Sbjct: 311 KGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFS 346
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 11/180 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+P D+ +LT++ EHG+V + D+ G+SR+F FV +T E A V+EKL
Sbjct: 194 VFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDE-NGKSRQFGFVSFETHECAEKVVEKL 252
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ E G++I V +K ++V L+ E + +YV NL ++T ++L
Sbjct: 253 HDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQG-VNLYVKNLDDSITDDIL 311
Query: 199 KKCFSEKGQVLSAKVLR---VPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ F+ G + S+KV+ V GT +S GFGFV F+S E+A A++ +N ++ + + V
Sbjct: 312 REHFAPYGNITSSKVMTDTDVEGT-RSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYV 370
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ L + G V V D T RS +A+V + EDA
Sbjct: 6 PSYPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
I+ +N E+ G+ I++ +++ D +L ++ N +++ NL KT+ ++
Sbjct: 66 ERAIDTMNFDELKGKAIRIMWSQR-----DPALRKSGVGN-------IFIKNLDKTIDNK 113
Query: 197 MLKKCFSEKGQVLSAKV-LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
ML FS G +LS KV + + G SK G+GFV F +EE A AI L+ L+ +++ V
Sbjct: 114 MLYDTFSAFGNILSCKVNVNLAGESK--GYGFVHFETEEAAVKAIEKLDGMLMNDKKVFV 171
Query: 256 NK 257
+
Sbjct: 172 GR 173
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ + IDN L G + +V + G S+ + FV +T E A IEKL
Sbjct: 101 IFIKNLDKTIDNKMLYDTFSAFGNILSCKVNVN-LAGESKGYGFVHFETEEAAVKAIEKL 159
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
+G + +++ V + +V E + V++ NL L + F
Sbjct: 160 DGMLMNDKKVFVGRFKSRGERV------REYGDRAKQFTNVFIKNLPAEWDDAKLTEVFG 213
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G V+S L KS FGFV+F + E AE + L++ EG++I V +A
Sbjct: 214 EHGSVMSV-ALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRA 267
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L + + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EIGG+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|15226983|ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 308
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 123/236 (52%), Gaps = 21/236 (8%)
Query: 33 LQIRFPKLSYSLHNLKTASIEDSTTRLFAV-----------AEETASSSSSSVDTPSEFA 81
L +R P + +L++ S D++ RL +V EET+ + S
Sbjct: 37 LSLRIPSNLSPVFSLRSGS--DNSRRLVSVLCSVAEKETSADEETSQEEKTEETQNSNLK 94
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R++++ N+P ++ ++++++ + G V E+I K G++R FAFV M + E+A A I+
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAID 153
Query: 142 KLNGTEIGGREIKVNIT---EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
K + ++ GR I V+ +KP + L D+ +K+YV NLA S L
Sbjct: 154 KFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPG---DTRHKLYVSNLAWKARSTHL 210
Query: 199 KKCFSEKG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
++ F+ +SA+V+ +SSG+GFV+F++ E+AE AI+ LN + G+ I
Sbjct: 211 RELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPI 266
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKI--VQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
P + ++Y+ N+ + L ++ + V A V++ GRS + FV T E
Sbjct: 189 PGDTRHKLYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATRE 247
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A I KLNG EI GR I + +
Sbjct: 248 EAENAITKLNGKEIMGRPITLKFS 271
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K++V NL +++ + + F + G V + +++R K+ GF FVT +S E+A+AAI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 243 LNNSLLEGQRIRVNKA 258
+ + G+ I V+ A
Sbjct: 155 FDTFQVSGRIISVSFA 170
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 68 SSSSSSVDTPSEF--ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
++ ++ DT SE R VY+GN+ +I D +T + + GAV K +VI+D G + +
Sbjct: 77 AAQNAGFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFD---GTNDPY 133
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ--VDLSLLQAEDSNFVDSPYK 183
AFV A ++ +N + +E+KVN +P Q VD S +
Sbjct: 134 AFVEFADHYTAAQALQAMNKRVLLEKEMKVNWATEPGSQAKVDTS-----------KHFH 182
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
V+VG+L+ V ++ LK F+ G+V AKV+R T KS G+GFV++ E+AE AI +
Sbjct: 183 VFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQM 242
Query: 244 NNSLLEGQRIRVNKA 258
N L + IR N A
Sbjct: 243 NGQWLGRRTIRTNWA 257
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 66 TASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
T S + VDT F V++G++ +DN L G V A+VI D T +S+ +
Sbjct: 167 TEPGSQAKVDTSKHF--HVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKSKGY 224
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV------QVDLSLLQAEDSNFV 178
FV E+A IE++NG +G R I+ N T KP Q S L +D
Sbjct: 225 GFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTGAGDGQYGRSELNYDDVYNQ 284
Query: 179 DSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
P VYVGN+ E L+ F + G++L ++ KS G+ FV F ++ A
Sbjct: 285 TGPDNTSVYVGNVNSNANDEDLRAAFDKFGRILEVRIF------KSQGYAFVRFDKKDSA 338
Query: 237 EAAISSLNNSLLEGQRIRV 255
AI +N L GQ I+
Sbjct: 339 CNAICKMNGQELCGQNIKC 357
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+GN+ N ++++L + G + + + +S+ +AFV + A I K+
Sbjct: 292 VYVGNVNSNANDEDLRAAFDKFGRILEVRIF------KSQGYAFVRFDKKDSACNAICKM 345
Query: 144 NGTEIGGREIKVNITEKP 161
NG E+ G+ IK + P
Sbjct: 346 NGQELCGQNIKCSWGRTP 363
>gi|300121030|emb|CBK21412.2| unnamed protein product [Blastocystis hominis]
Length = 296
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQ 171
+++YD+ TGR R F FV T + N +E+ NG+ I GREI+V + + L + ++ Q
Sbjct: 33 QIVYDRNTGRPRGFGFVSFSTEDGLNKAMEQ-NGSLINGREIRVEVAKGSLGKNSENVRQ 91
Query: 172 AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+ N KV+V +L+ T EML+ FS+ G++ K+L T +S G G V FS
Sbjct: 92 NRNYN---DENKVFVSSLSWNTTDEMLRDAFSQCGKIEHYKILTDRQTGRSRGMGIVKFS 148
Query: 232 SEEDAEAAISSLNNSLLEGQRIRV 255
+ E+ AIS++N S L+G++I V
Sbjct: 149 TREEMNNAISTMNGSTLDGRQIAV 172
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+V++ ++ N ++ L + G +E +++ D+ TGRSR V T E+ N I
Sbjct: 100 KVFVSSLSWNTTDEMLRDAFSQCGKIEHYKILTDRQTGRSRGMGIVKFSTREEMNNAIST 159
Query: 143 LNGTEIGGREIKV 155
+NG+ + GR+I V
Sbjct: 160 MNGSTLDGRQIAV 172
>gi|294884878|gb|ADF47447.1| TIA1-like protein [Dugesia japonica]
Length = 323
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 97/177 (54%), Gaps = 3/177 (1%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+P +++ L +I G +I D ++ ++ +AF+ A+ +
Sbjct: 7 RTIYVGNLPDAVNDQLLIRIFGNFGQCISCHIIRD-FSCQTNPYAFIEYTDHSSASLALS 65
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
++G + +IKVN + P + + + ++ +S +++VG++ V MLK+
Sbjct: 66 AMDGIYMWNNQIKVNWSSGPSAVPGPAAVASAKIDYSNS-VQIFVGDIGLDVDEPMLKEG 124
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS+ GQ++ AKV+R P +S GF FV+FS+ ++AE AI S++ + + I+ N A
Sbjct: 125 FSQFGQLIDAKVVRYP-DGQSRGFAFVSFSNRDEAERAIQSMHKTWFHNRTIKCNWA 180
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A+ +Y+GN+ + + L +I G V + ++I DK TG S + FV A+ +
Sbjct: 21 AKALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMAL 80
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+ LNG + G+E++VN Q D Q EDS S ++++VG+LA + ++L +
Sbjct: 81 QSLNGRVLHGQELRVNWA----FQKD----QREDSA---SQFQIFVGDLASDINDKLLCE 129
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G A+V+ T +S G+GFV+F + DAE A+S ++ ++L +RIR A
Sbjct: 130 AFQSCG-CADARVMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWA 186
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 25/193 (12%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D+ S+F ++++G++ +I++ L + Q G + A V++D TGRS+ + FV KT
Sbjct: 106 DSASQF--QIFVGDLASDINDKLLCEAFQSCGCAD-ARVMWDHNTGRSKGYGFVSFKTRA 162
Query: 135 DANAVIEKLNGTEIGGREIKVNI-------TEKPLVQVD----LSLLQAEDSNFVDSPYK 183
DA + +++GT +G R I+ ++ VD LS QA+ N
Sbjct: 163 DAEQALSQMSGTMLGSRRIRCGWAQHKQENSQASFAAVDRVSTLSRAQADPEN-----AN 217
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
VYVGNLA V+ L+ S+ G VL K+ R G+ F F+S DA AI L
Sbjct: 218 VYVGNLAPDVSDAELQTAVSQFGAVLDVKIYR------KGGYAFAQFASHADAVRAIVGL 271
Query: 244 NNSLLEGQRIRVN 256
+ L G+ ++ +
Sbjct: 272 SGQNLGGKALKCS 284
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D+ +YVGNL VT ML++ FS GQV K+++ T S+G+GFV F A+
Sbjct: 19 DAAKALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADM 78
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A+ SLN +L GQ +RVN A
Sbjct: 79 ALQSLNGRVLHGQELRVNWA 98
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 100/189 (52%), Gaps = 11/189 (5%)
Query: 75 DTP--SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT 132
+TP SE +++G + N+D++ L + +E G V A V+ ++ TG+SR + +V +
Sbjct: 172 ETPEASEEPATLFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVDFSS 231
Query: 133 VEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVG 187
A + +L G EI GR + +++ T KP + F D P +++G
Sbjct: 232 KAAAEKALNELQGKEIDGRPVNLDMSTGKPKTPASNDRAK----KFGDVPSAPSDTLFIG 287
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL+ L + F E G V+S ++ P T + GFG+V FSS E+A+ A++SLN
Sbjct: 288 NLSFNTERNKLFEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEY 347
Query: 248 LEGQRIRVN 256
L+G+ R++
Sbjct: 348 LDGRPCRLD 356
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D PS + ++IGN+ N + ++L +I E+G V + T + + F +V +VE
Sbjct: 275 DVPSAPSDTLFIGNLSFNTERNKLFEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVE 334
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A + LNG + GR +++ +
Sbjct: 335 EAQNALNSLNGEYLDGRPCRLDFS 358
>gi|295672357|ref|XP_002796725.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283705|gb|EEH39271.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 474
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 4/177 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ N+D + L +E G + ++ D+ +GRS+ F +V EDA
Sbjct: 233 LFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSKGFGYVEFTNAEDAVKAHAAK 292
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK--VYVGNLAKTVTSEMLK 199
TE+ GR++ V+ Q+ NF D SP +++GN+A + M+
Sbjct: 293 KDTELDGRKLNVDFANARSNAAPRDRAQSRAQNFGDQKSPESDTLFIGNIAFSADESMIS 352
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F+E G +L ++ P + + GFG+V FSS ++A +A SLN S L G+ +R++
Sbjct: 353 ETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESLNGSELAGRAMRLD 409
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Query: 171 QAEDSNFVDSPYK----------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS 220
+AED V +P K +++GNL+ V E L+ F E G++ +++ +
Sbjct: 210 KAEDEEEVVAPKKTRVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSG 269
Query: 221 KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+S GFG+V F++ EDA A ++ ++ L+G+++ V+
Sbjct: 270 RSKGFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVD 305
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGNI + D +++ E+G++ + D +GR + F +V ++++A + E L
Sbjct: 337 LFIGNIAFSADESMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESL 396
Query: 144 NGTEIGGREIKVNIT 158
NG+E+ GR ++++ +
Sbjct: 397 NGSELAGRAMRLDFS 411
>gi|326936530|ref|XP_003214306.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Meleagris gallopavo]
Length = 423
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 3/180 (1%)
Query: 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV 139
F Y+GN+ R++ + ++ + G + ++I D T + + FV A +
Sbjct: 45 FVVYPYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASA 102
Query: 140 IEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E +
Sbjct: 103 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQASQDHFHVFVGDLSPEITTEDI 162
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 163 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 222
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Query: 68 SSSSSSVDT-PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
+SSS+ V T S+ V++G++ I +++ G + A V+ D TG+S+ +
Sbjct: 131 TSSSTVVSTQASQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 190
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDSNFVDS 180
FV DA I+++ G +GGR+I+ N T KP + + L +D S
Sbjct: 191 FVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSS 250
Query: 181 P--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
P VY G + +T +++++ FS GQ++ +V G+ FV F+S E A
Sbjct: 251 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHESAAH 304
Query: 239 AISSLNNSLLEGQRIRV 255
AI S+N + +EG ++
Sbjct: 305 AIVSVNGTTIEGHVVKC 321
>gi|410900508|ref|XP_003963738.1| PREDICTED: nucleolysin TIAR-like isoform 3 [Takifugu rubripes]
Length = 395
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 98/179 (54%), Gaps = 12/179 (6%)
Query: 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV 139
++ +Y+GN+ R++ + ++ + G + ++I D + S + FV +DA +
Sbjct: 6 LSKTLYVGNLSRDVTEILILQLFSQIGPCKSCKMITDHTS--SDPYCFVEFVDHKDAASA 63
Query: 140 IEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+N +I G+E+KVN P Q + + SN + V+VG+L+ +T+E ++
Sbjct: 64 RATMNKRKILGKEVKVNWATSPSCQ------KKDTSNH----FHVFVGDLSPDITTEDIR 113
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G + A+VL+ T KS G+GFV+F ++ DAE AIS + L+G++IR N A
Sbjct: 114 AAFAPFGHISDARVLKDMATGKSKGYGFVSFYNKLDAENAISKMAGQWLQGRQIRTNWA 172
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
S S DT + F V++G++ +I +++ G + A V+ D TG+S+ + F
Sbjct: 84 SPSCQKKDTSNHF--HVFVGDLSPDITTEDIRAAFAPFGHISDARVLKDMATGKSKGYGF 141
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD-----SP 181
V DA I K+ G + GR+I+ N T KP ++ F D SP
Sbjct: 142 VSFYNKLDAENAISKMAGQWLQGRQIRTNWATRKPPAPKSFQDNGSKHLKFDDIVTQSSP 201
Query: 182 YK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
+ VY G + +T ++++ FS GQ++ +V G+ FV FSS + A A
Sbjct: 202 HNCTVYCGGIQSGLTEHLMQQTFSPFGQIMEIRVF------PDKGYSFVRFSSHDSAAHA 255
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N +++EG ++
Sbjct: 256 IVSVNGTVIEGNLVKC 271
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 13/183 (7%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE R +++GN+ I ++ L + + GAV KA+V +D G + FAF+ A
Sbjct: 33 SEDPRTLFVGNLDPAITDEFLATLFNQIGAVTKAKVCFD---GMNDPFAFIEFGDHNQAG 89
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTS 195
++ +NG + RE++VN VD S Q DS ++ + V+VG+L+ V S
Sbjct: 90 QALQAMNGRSLLDREMRVNWA------VDAS--QPGDSRKQETSRHFHVFVGDLSSEVDS 141
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
L++ F G V AK++R T+K+ G+GFV++ EDAE AI +N L + IR
Sbjct: 142 TKLREAFLAFGDVSEAKIIRDTATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRT 201
Query: 256 NKA 258
N A
Sbjct: 202 NWA 204
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 25/229 (10%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L + S+ D R+ + + S +T F V++G++ +D+ +L +
Sbjct: 91 ALQAMNGRSLLDREMRVNWAVDASQPGDSRKQETSRHF--HVFVGDLSSEVDSTKLREAF 148
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP 161
G V +A++I D T +++ + FV EDA IE++NG +G R I+ N T KP
Sbjct: 149 LAFGDVSEAKIIRDTATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWATRKP 208
Query: 162 LVQVDLSLLQAEDSNF-------VDSPYK--------VYVGNLAKTVTSEMLKKCFSEKG 206
+ + D Y VYVG + + +T + +++ F G
Sbjct: 209 EEEGGGERRDRGERGERRHYEKTFDEIYNQTSADNTSVYVGQINQ-LTEDEIRRAFDRFG 267
Query: 207 QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ ++ +V G+ FV F +E A AI +NN+ ++GQ++R
Sbjct: 268 PINEVRMFKV------QGYAFVKFEQKEAAARAIVQMNNAEIQGQQVRC 310
>gi|410900504|ref|XP_003963736.1| PREDICTED: nucleolysin TIAR-like isoform 1 [Takifugu rubripes]
Length = 386
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 98/179 (54%), Gaps = 12/179 (6%)
Query: 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV 139
++ +Y+GN+ R++ + ++ + G + ++I D + S + FV +DA +
Sbjct: 8 LSKTLYVGNLSRDVTEILILQLFSQIGPCKSCKMITDHTS--SDPYCFVEFVDHKDAASA 65
Query: 140 IEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+N +I G+E+KVN P Q + + SN + V+VG+L+ +T+E ++
Sbjct: 66 RATMNKRKILGKEVKVNWATSPSCQ------KKDTSNH----FHVFVGDLSPDITTEDIR 115
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G + A+VL+ T KS G+GFV+F ++ DAE AIS + L+G++IR N A
Sbjct: 116 AAFAPFGHISDARVLKDMATGKSKGYGFVSFYNKLDAENAISKMAGQWLQGRQIRTNWA 174
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
S S DT + F V++G++ +I +++ G + A V+ D TG+S+ + F
Sbjct: 86 SPSCQKKDTSNHF--HVFVGDLSPDITTEDIRAAFAPFGHISDARVLKDMATGKSKGYGF 143
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD-----SP 181
V DA I K+ G + GR+I+ N T KP ++ F D SP
Sbjct: 144 VSFYNKLDAENAISKMAGQWLQGRQIRTNWATRKPPAPKSFQDNGSKHLKFDDIVTQSSP 203
Query: 182 YK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
+ VY G + +T ++++ FS GQ++ +V G+ FV FSS + A A
Sbjct: 204 HNCTVYCGGIQSGLTEHLMQQTFSPFGQIMEIRVF------PDKGYSFVRFSSHDSAAHA 257
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N +++EG ++
Sbjct: 258 IVSVNGTVIEGNLVKC 273
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV 139
R +Y+GN+ R + + ++ + G + ++I + G + + FV A A
Sbjct: 12 LPRTLYVGNLDRQVTEAFILQLFGQIGPCKSCKMIAEH--GGNDPYCFVEFVEHSHAAAA 69
Query: 140 IEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
++ +NG I G+E+KVN P S ++ + SN + V+VG+L+ V + LK
Sbjct: 70 LQTMNGRMILGKEVKVNWATTP------SSMKKDTSNH----HHVFVGDLSSEVDTPDLK 119
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ GQ+ A+V++ T+KS G+GFV+F ++ DAE AI +N L G+ IR N A
Sbjct: 120 AAFAPFGQISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIRTNWA 178
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 14/219 (6%)
Query: 45 HNLKTASIEDSTTRLFAVAEE--TASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
H+ A+++ R+ E +++ SS+ + V++G++ +D +L
Sbjct: 63 HSHAAAALQTMNGRMILGKEVKVNWATTPSSMKKDTSNHHHVFVGDLSSEVDTPDLKAAF 122
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK-- 160
G + A V+ D T +S+ + FV DA I+ +NG + GR I+ N +
Sbjct: 123 APFGQISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIRTNWATRKP 182
Query: 161 -PLVQVDLSLLQAEDSNFVDSPY---KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
P Q + + + D S Y VY+G + +T +++ FS G + ++
Sbjct: 183 PPPRQPETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEGKMRETFSHYGHIQEVRIF-- 240
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G+ F+ F + E A AI S+N S + G ++
Sbjct: 241 ----PDKGYAFIRFMTHESAAHAIVSVNGSQINGHMVKC 275
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+D L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 215 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 273
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 274 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 331
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 332 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 380
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 180
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V + LK+ F
Sbjct: 181 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDDNLKELF 233
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 234 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 288
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 95 NFDVIKGKPIRI 106
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 318 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 375
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 376 NGRIVGSKPLYVALAQR 392
>gi|225683278|gb|EEH21562.1| nuclear localization sequence-binding protein [Paracoccidioides
brasiliensis Pb03]
Length = 492
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 4/177 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ N+D + L +E G + ++ D+ +GRS+ F +V EDA
Sbjct: 249 LFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSKGFGYVEFTNAEDAVKAHAAK 308
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK--VYVGNLAKTVTSEMLK 199
TE+ GR++ V+ Q+ NF D SP +++GN+A + M+
Sbjct: 309 KDTELDGRKLNVDFANARSNAAPRDRAQSRAQNFGDQRSPESDTLFIGNIAFSADENMIS 368
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F+E G +L ++ P + + GFG+V FSS ++A +A SLN S L G+ +R++
Sbjct: 369 ETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESLNGSELAGRAMRLD 425
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 46/75 (61%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGNI + D + +++ E+G++ + D +GR + F +V ++++A + E L
Sbjct: 353 LFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESL 412
Query: 144 NGTEIGGREIKVNIT 158
NG+E+ GR ++++ +
Sbjct: 413 NGSELAGRAMRLDFS 427
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Query: 171 QAEDSNFVDSPYK----------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS 220
+AED V +P K +++GNL+ V E L+ F E G++ +++ +
Sbjct: 226 KAEDEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSG 285
Query: 221 KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+S GFG+V F++ EDA A ++ ++ L+G+++ V+
Sbjct: 286 RSKGFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVD 321
>gi|354491765|ref|XP_003508025.1| PREDICTED: nucleolysin TIAR-like [Cricetulus griseus]
Length = 285
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 20/166 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYELNTKQLSYDEVVSQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS 220
SN VY G + +T +++++ FS GQ+L +V G S
Sbjct: 201 SNCT-----VYCGGVTSGLTEQLMRQTFSPFGQILEIRVFPDKGYS 241
>gi|449488383|ref|XP_002188190.2| PREDICTED: nucleolysin TIA-1-like, partial [Taeniopygia guttata]
Length = 537
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFSEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 34/200 (17%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
V DA I+++ G +GGR+I+ N T KP A S F +
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP---------PAPKSTF-----ESRS 186
Query: 187 GNLAKTVTSE-----------MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235
G L+ V E ++++ FS GQ++ +V G+ FV FSS E
Sbjct: 187 GPLSPRVPDEAVQSVLPAPEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSSHES 240
Query: 236 AEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 241 AAHAIVSVNGTTIEGHVVKC 260
>gi|47217530|emb|CAG02457.1| unnamed protein product [Tetraodon nigroviridis]
Length = 418
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 12/174 (6%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +N
Sbjct: 15 YVGNLSRDVTEPLILQVFTQIGPCKSCKMIVD--TAGNDPYCFVEFYEHRHAAASLAAMN 72
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G +I G+E+KVN P Q + + SN + V+VG+L+ +T++ +K F
Sbjct: 73 GRKIMGKEVKVNWATTPTSQ------KKDTSNH----FHVFVGDLSPEITTDDVKAAFGP 122
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 123 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 176
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ +S DT + F V++G++ I D++ G + A V+ D TG+S+ + F
Sbjct: 88 TPTSQKKDTSNHF--HVFVGDLSPEITTDDVKAAFGPFGRISDARVVKDMATGKSKGYGF 145
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD-----SP 181
V DA I+++ G +GGR+I+ N T KP ++ F D SP
Sbjct: 146 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKTTYESNSKQLCFDDVVNQSSP 205
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G ++ +T +++++ FS G ++ +V G+ FV F+S E A A
Sbjct: 206 SNCTVYCGGVSTGLTEQLMRQTFSPFGPIMEIRVF------PDKGYSFVRFNSHESAAHA 259
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N S +EG ++
Sbjct: 260 IVSVNGSSIEGHVVKC 275
>gi|255760011|ref|NP_001157551.1| nucleolysin TIA-1 isoform 3 [Mus musculus]
gi|23271442|gb|AAH23813.1| Tia1 protein [Mus musculus]
Length = 285
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 26/174 (14%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+N VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 201 NNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 243
>gi|148666753|gb|EDK99169.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_c
[Mus musculus]
Length = 293
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 12 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 69
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 70 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 119
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 120 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 179
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 26/174 (14%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 91 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 148
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 149 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSP 208
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+N VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 209 NNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 251
>gi|134106861|ref|XP_777972.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260672|gb|EAL23325.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 444
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G + N+DND L + G V A V++D+ + +SR F +V +E + IEK
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLESSAKAIEK- 256
Query: 144 NGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLK 199
+G+EI GR I+VN KP + + +A N SP +++G+L+ +VT + +
Sbjct: 257 DGSEIDGRAIRVNYATQRKPN---EAAEKRARVFNDKQSPPAETLWIGSLSFSVTEDQVY 313
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F + G V S ++ T GFG+V FSS +DA AA+ ++N + + G+ IRV+
Sbjct: 314 EAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAALKAMNGAEIAGRAIRVD 370
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D S A ++IG++ ++ D++ + +HG V+ + D+ TG + F +V +V+
Sbjct: 289 DKQSPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVD 348
Query: 135 DANAVIEKLNGTEIGGREIKVNI 157
DA+A ++ +NG EI GR I+V+
Sbjct: 349 DASAALKAMNGAEIAGRAIRVDF 371
>gi|432884715|ref|XP_004074554.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oryzias latipes]
Length = 386
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + FV A A
Sbjct: 4 EQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVD--TAGHDPYCFVEFYEHRHATA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
I +NG +I G+E+KVN P Q +D++ S + V+VG+L+ +T++ +
Sbjct: 62 TIAAMNGRKILGKEVKVNWATTPTSQ-------KKDTS---SHFHVFVGDLSPEITTDDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ +V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ +S DT S F V++G++ I D++ G + V+ D TG+S+ + F
Sbjct: 83 TPTSQKKDTSSHF--HVFVGDLSPEITTDDIKAAFAPFGKISDCRVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTTNESSSSKQLSFDEVVNQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 201 SNCT-----VYCGGVTTGLTEQIMRQTFSPFGQIMEIRVF------PEKGYSFVRFNSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 AAAHAIVSVNGTSIEGYVVKC 270
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D TG+S+ F FV + EDAN +E++
Sbjct: 199 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 257
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 258 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 315
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 316 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 364
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 164
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 165 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 217
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ P T KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 218 SKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA 272
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 302 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 359
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 360 NGRIVGSKPLYVALAQR 376
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D TG+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P T KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|326514938|dbj|BAJ99830.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 638
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+YIG+I ++ L + Q G V+ + +D T R + FAF+ + E A IE+
Sbjct: 128 RIYIGSINFELNEAMLKQAFQPFGPVKAVSLTFDPVTNRHKGFAFLEYEIPEAAQLSIEQ 187
Query: 143 LNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +GGR IKV + P Q + L E N+ ++Y+ ++ +T ++
Sbjct: 188 MNGVILGGRNIKVGRPSNMPQAQPIIDQLTEEAKNY----NRIYIASIHPDLTETDIQSV 243
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ S + + TSK G+GF+ + + + A+ AIS++N L GQ +RV KA
Sbjct: 244 FEAFGEIKSCVLAKDTATSKHKGYGFIEYGTVQAAQDAISAMNLFDLGGQHLRVGKA 300
>gi|354545437|emb|CCE42165.1| hypothetical protein CPAR2_807140 [Candida parapsilosis]
Length = 420
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Query: 64 EETASSSSSSVDTPSEFARRV-YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
E T + +S+ + E + ++ Y+GN+P++ ++++++ ++ +++ DK
Sbjct: 35 ESTPVTPASATEGGRETSNKILYVGNLPKSASEEQISELFSVSKPIKSIKLLNDK-NKLG 93
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY 182
+AF+ ++A+ + LNG + EI+VN + S A S D Y
Sbjct: 94 FNYAFIEFDDNQEADMALSTLNGKLLNNCEIRVNWAYQ-------SATIASSSTPEDPTY 146
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
++VG+L+ V E LKK F++ A V+ TS+S G+GFVTFS +EDAE A+ +
Sbjct: 147 NLFVGDLSSEVNDEALKKAFNKFDSFKEAHVMWDMQTSRSRGYGFVTFSKQEDAELALQT 206
Query: 243 LNNSLLEGQRIRVNKA 258
+N + L G+ IR N A
Sbjct: 207 MNGAWLGGRAIRCNWA 222
>gi|297307145|ref|NP_001167497.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1
[Xenopus laevis]
gi|50416510|gb|AAH77169.1| Unknown (protein for MGC:78766) [Xenopus laevis]
Length = 385
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 101/187 (54%), Gaps = 15/187 (8%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
+ + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 DLPKTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVD-------LSLLQAEDSNFVDSPYKVYVGNLAK 191
+ +NG +I G+E+KVN P Q +S L+++D + V+VG+L+
Sbjct: 62 SLAAINGRKILGKEVKVNWATTPSSQKKDANSSSVVSTLRSQDH------FHVFVGDLSP 115
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
++++ +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI+ + L G+
Sbjct: 116 EISTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGR 175
Query: 252 RIRVNKA 258
+IR N A
Sbjct: 176 QIRTNWA 182
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I D++ G + A V+ D TG+S+ + FV DA I +
Sbjct: 107 HVFVGDLSPEISTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQ 166
Query: 143 LNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L E+ SP VY G + ++
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTFESNAKQLTYEEVVNQSSPSNCTVYCGGVTSGLS 226
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FSS E A AI S+N + +EG ++
Sbjct: 227 EQLMRQTFSPFGQIMEVRVF------PDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280
Query: 255 V 255
Sbjct: 281 C 281
>gi|410929559|ref|XP_003978167.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Takifugu rubripes]
Length = 385
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 95/180 (52%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + FV A A
Sbjct: 4 EQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVD--TAGHDPYCFVEFYEHRHATA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
I +NG +I G+E+KVN P Q +D++ S + V+VG+L+ +T++ +
Sbjct: 62 TIAAMNGRKILGKEVKVNWATTPTSQ-------KKDTS---SHFHVFVGDLSPEITTDDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ +V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFGPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ +S DT S F V++G++ I D++ G + V+ D TG+S+ + F
Sbjct: 83 TPTSQKKDTSSHF--HVFVGDLSPEITTDDIKAAFGPFGKISDCRVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTTNETTNTKQLSFDEVVNQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS G ++ +V G+ FV F+S E
Sbjct: 201 SNCT-----VYCGGVTTGLTEQIMRQTFSPFGHIMEIRVF------PDKGYSFVRFNSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 AAAHAIVSVNGTTIEGYVVKC 270
>gi|16215606|emb|CAC95018.1| TIA-1 protein [Xenopus laevis]
Length = 388
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 101/187 (54%), Gaps = 15/187 (8%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
+ + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 DLPKTLYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVD-------LSLLQAEDSNFVDSPYKVYVGNLAK 191
+ +NG +I G+E+KVN P Q +S L+++D + V+VG+L+
Sbjct: 62 SLAAINGRKILGKEVKVNWATTPSSQKKDANSSSVVSTLRSQDH------FHVFVGDLSP 115
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
++++ +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI+ + L G+
Sbjct: 116 EISTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGR 175
Query: 252 RIRVNKA 258
+IR N A
Sbjct: 176 QIRTNWA 182
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I D++ G + A V+ D TG+S+ + FV DA I +
Sbjct: 107 HVFVGDLSPEISTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQ 166
Query: 143 LNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L E+ SP VY G + ++
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTFESNAKQLTYEEVVNQSSPSNCTVYCGGVTSGLS 226
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FSS E A AI S+N + +EG ++
Sbjct: 227 EQLMRQTFSPFGQIMEVRVF------PDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280
Query: 255 V 255
Sbjct: 281 C 281
>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
Length = 249
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++
Sbjct: 5 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 64
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP D + F D+P + +++GNL+ + +
Sbjct: 65 QGKEIDGRPINCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAI 118
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V FS+ EDA+ A+ +L ++ + +R++
Sbjct: 119 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 176
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ ++ E LKK F G V+ A+V+ GT +S G+G+V F ++ AE AI
Sbjct: 2 PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAI 61
Query: 241 SSLNNSLLEGQRIRVN 256
+ ++G+ I +
Sbjct: 62 QEMQGKEIDGRPINCD 77
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ N D D + ++ +HG V + T + + F +V +E
Sbjct: 95 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 154
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA ++ L G I R ++++ +
Sbjct: 155 DAKKALDALQGEYIDNRPVRLDFS 178
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E S+ + D S + +++G + N+D+D L K ++ G V A VI ++ T RS+
Sbjct: 384 EDGSAKKAKTDDASGDIKNLFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTERSKG 443
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT----EKPLVQVDLSLLQAEDSNFVDS 180
F +V + EDA +E + GTEI GR I V+ + E+P Q S Q E S +
Sbjct: 444 FGYVDFASPEDARKAVEAMAGTEIDGRTINVDFSAPKPERP-PQEKRSFGQEELSAPTTT 502
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
+++GNL + T + + + FSE G + S ++ P T + GFG+V F+++E A AA+
Sbjct: 503 ---LFIGNLPFSATQDSVYEAFSEYGDINSVRLPTDPETERIKGFGYVEFATQEAATAAV 559
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
++VG L+ V + LKK F + G+V+SA+V+ GT +S GFG+V F+S EDA A+ ++
Sbjct: 403 LFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEAM 462
Query: 244 NNSLLEGQRIRVN 256
+ ++G+ I V+
Sbjct: 463 AGTEIDGRTINVD 475
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+D L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 184 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 242
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 243 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 300
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 301 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 349
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 149
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V + LK+ F
Sbjct: 150 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDDNLKELF 202
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 203 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 257
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 64 NFDVIKGKPIRI 75
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 287 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 344
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 345 NGRIVGSKPLYVALAQR 361
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 1/173 (0%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + N+D++ L + G V +A V D+ TGRS+ F +V T E A I ++
Sbjct: 393 IFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEM 452
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG EI GR + VN Q D+ +S ++VGN++ +ML + F
Sbjct: 453 NGKEIDGRAVNVNAATPKTPNPAGRAKQFGDTVSAESKV-LFVGNVSFNANEDMLWETFG 511
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
E G ++S ++ T + GFG+V F+S E+A++A ++LN + G+ IR++
Sbjct: 512 EHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNGKDIAGRNIRLD 564
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D+ ++VG L+ V E LK F G+V+ A V T +S GFG+V+FS+ E AE
Sbjct: 388 DANCNIFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEK 447
Query: 239 AISSLNNSLLEGQRIRVNKA 258
AI+ +N ++G+ + VN A
Sbjct: 448 AIAEMNGKEIDGRAVNVNAA 467
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT S ++ +++GN+ N + D L + EHG + + D+ TG+ + F +V +VE
Sbjct: 483 DTVSAESKVLFVGNVSFNANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVE 542
Query: 135 DANAVIEKLNGTEIGGREIKVNITE 159
+A + LNG +I GR I+++ ++
Sbjct: 543 NAKSAFNALNGKDIAGRNIRLDFSQ 567
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D TG+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ P T KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 212 SKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|58258845|ref|XP_566835.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222972|gb|AAW41016.1| single-stranded DNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 441
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G + N+DND L + G V A V++D+ + +SR F +V +E + IEK
Sbjct: 195 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLESSAKAIEK- 253
Query: 144 NGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLK 199
+G+EI GR I+VN KP + + +A N SP +++G+L+ +VT + +
Sbjct: 254 DGSEIDGRAIRVNYATQRKPN---EAAEKRARVFNDKQSPPAETLWIGSLSFSVTEDQVY 310
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F + G V S ++ T GFG+V FSS +DA AA+ ++N + + G+ IRV+
Sbjct: 311 EAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAALKAMNGAEIAGRAIRVD 367
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D S A ++IG++ ++ D++ + +HG V+ + D+ TG + F +V +V+
Sbjct: 286 DKQSPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVD 345
Query: 135 DANAVIEKLNGTEIGGREIKVNI 157
DA+A ++ +NG EI GR I+V+
Sbjct: 346 DASAALKAMNGAEIAGRAIRVDF 368
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 2/196 (1%)
Query: 63 AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
A+E A + T V++GN+ N+D + L + G VE A +I DK TGR+
Sbjct: 164 ADEAAEEPTKKPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRA 223
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY 182
+ F +V ++ + A + L GTE+ GREI+V+++ P D + +++
Sbjct: 224 KGFGYVTFESADALTAAMA-LTGTELDGREIRVDVST-PKPPRDGNRQGRKEAPQSAPTT 281
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
+++GNL+ VT + +++ FS+ GQ++S + T GFG+V + E A+ A+
Sbjct: 282 TLFLGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEG 341
Query: 243 LNNSLLEGQRIRVNKA 258
LN + G+ +R++ A
Sbjct: 342 LNGVEIAGRSLRLDYA 357
>gi|242082447|ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 98/178 (55%), Gaps = 14/178 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEV-IYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R+ NIP + DE+ + Q HG+V E+ +Y ++R AFV M + EDA A +
Sbjct: 73 RLVAQNIPWDSTADEMRALFQTHGSVVGVELSMYS--ASKNRGLAFVTMGSEEDALAALT 130
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP---YKVYVGNLAKTVTSEML 198
LN T + R+IKV+ +P + Q + V +P Y V+VGNL V + L
Sbjct: 131 HLNSTILNDRKIKVDFA-RPRKK------QPKQPVVVSNPMEKYIVFVGNLTWRVRNRHL 183
Query: 199 KKCFSEKGQVLSAKVL-RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ F+ V+SA+V+ +S+G+ FV+FSS+E AEAAIS+ N +L G+ I V
Sbjct: 184 RELFASAPGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISAFNGKILMGRPINV 241
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
N+ T++ ++ F G V+ + L + SK+ G FVT SEEDA AA++ LN+++
Sbjct: 78 NIPWDSTADEMRALFQTHGSVVGVE-LSMYSASKNRGLAFVTMGSEEDALAALTHLNSTI 136
Query: 248 LEGQRIRVNKA 258
L ++I+V+ A
Sbjct: 137 LNDRKIKVDFA 147
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR-SRRFAFVMMKTVEDANAVIEK 142
V++GN+ + N L ++ V AEVI+ T R S +AFV + E A A I
Sbjct: 169 VFVGNLTWRVRNRHLRELFASAPGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISA 228
Query: 143 LNGTEIGGREIKVNITEK 160
NG + GR I V + ++
Sbjct: 229 FNGKILMGRPINVMLKDE 246
>gi|148666756|gb|EDK99172.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_f
[Mus musculus]
Length = 375
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
+N VY G + +T +++++ FS GQ++ +V G+ FV FSS E
Sbjct: 201 NNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKC 270
>gi|348542282|ref|XP_003458614.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Oreochromis
niloticus]
Length = 386
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ +Y+GN+ R++ + ++ + G + ++I D T + FV A A I
Sbjct: 7 KTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVD--TAGHDPYCFVEFYEHRHATATIA 64
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q +D++ S + V+VG+L+ +T++ +K
Sbjct: 65 AMNGRKILGKEVKVNWATTPTSQ-------KKDTS---SHFHVFVGDLSPEITTDDIKAA 114
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ +V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 115 FAPFGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ +S DT S F V++G++ I D++ G + V+ D TG+S+ + F
Sbjct: 83 TPTSQKKDTSSHF--HVFVGDLSPEITTDDIKAAFAPFGKISDCRVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD-----SP 181
V DA I+++ G +GGR+I+ N T KP + + +F + SP
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTTSETTNTKQLSFDEVVNQSSP 200
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G + +T +++++ FS GQ++ +V G+ FV F+S E A A
Sbjct: 201 SNCTVYCGGVTTGLTEQIMRQTFSPFGQIMEIRVF------PEKGYSFVRFNSHEAAAHA 254
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 255 IVSVNGTSIEGYVVKC 270
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D P +YVGNL++ VT ++ + F + G S K++ T+ + FV F A A
Sbjct: 4 DQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIV--DTAGHDPYCFVEFYEHRHATA 61
Query: 239 AISSLNNSLLEGQRIRVNKA 258
I+++N + G+ ++VN A
Sbjct: 62 TIAAMNGRKILGKEVKVNWA 81
>gi|452848411|gb|EME50343.1| hypothetical protein DOTSEDRAFT_69017 [Dothistroma septosporum
NZE10]
Length = 516
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 112/205 (54%), Gaps = 11/205 (5%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A AE +S + + P+ +++GN+ N+D + LT+ +E GA++ VI D+ +G
Sbjct: 233 AEAEPEETSKKTKTEDPAATGN-LFVGNLSWNVDEEWLTREFEEFGAIKAVRVITDRDSG 291
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN---- 176
RS+ + +V ++ +DA +E +G + RE++V++ P Q + + SN
Sbjct: 292 RSKGYGYVEFESADDAAKALEARHGYTLDNRELRVDLG-TPRAQRNDGQTPQQRSNDRQK 350
Query: 177 -FVDSPYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+ D+P + ++VGN++ T +M+ + F E G + + ++ T GFG+V FS
Sbjct: 351 QYGDTPSQPSATLFVGNISFDATQDMVTEVFQEYGSINAVRLPTDRETGAPKGFGYVEFS 410
Query: 232 SEEDAEAAISSLNNSLLEGQRIRVN 256
S E+A++A+ +L + G+ IR++
Sbjct: 411 SIEEAKSAMENLTGVDIAGRPIRLD 435
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPS+ + +++GNI + D +T++ QE+G++ + D+ TG + F +V ++E
Sbjct: 354 DTPSQPSATLFVGNISFDATQDMVTEVFQEYGSINAVRLPTDRETGAPKGFGYVEFSSIE 413
Query: 135 DANAVIEKLNGTEIGGREIKVNI-TEKP 161
+A + +E L G +I GR I+++ T KP
Sbjct: 414 EAKSAMENLTGVDIAGRPIRLDYSTPKP 441
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++DND LT++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 498 VYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDE-SGKSKGFGFVSYEKHEDAQRAVDEM 556
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E G+ I V +K Q +L + Q S + +YV NL ++ E
Sbjct: 557 NGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQG--VNLYVKNLDDSIDDER 614
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G S+ GFGFV FS+ E+A A+S +N L+
Sbjct: 615 LRKAFSPFGTITSAKVMMEGGHSR--GFGFVCFSAPEEAAKAVSEMNGKLV 663
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L K G + +VI D+ S+ + FV + + A+ IEK+
Sbjct: 406 IFIKNLEKSIDNKALYKTFSAFGNILSCKVISDENG--SKGYGFVHFENQQAADKAIEKM 463
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + ++ V + +++L E +N VY+ N + + ++ L + F
Sbjct: 464 NGVRLNNLKVYVGRFKSRKERELELGARAREFTN-------VYIKNFGEDMDNDRLTEVF 516
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV++ EDA+ A+ +N G+RI V +A
Sbjct: 517 GKFGHALSVKVM-TDESGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRA 571
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 14/174 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A+V + + DA V+E +
Sbjct: 318 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLETM 377
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ +++ +++ D SL ++ N +++ NL K++ ++ L K FS
Sbjct: 378 NLDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLEKSIDNKALYKTFS 425
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS KV+ SK G+GFV F +++ A+ AI +N L ++ V +
Sbjct: 426 AFGNILSCKVISDENGSK--GYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGR 477
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + G SR F FV E+A + ++
Sbjct: 601 LYVKNLDDSIDDERLRKAFSPFGTITSAKVMME--GGHSRGFGFVCFSAPEEAAKAVSEM 658
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 659 NGKLVATKPLYVALAQR 675
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D TG+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGAITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ P T KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 212 SKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K GA+ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGAITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|58865762|ref|NP_001012096.1| TIA1 cytotoxic granule-associated RNA binding protein [Rattus
norvegicus]
gi|56268852|gb|AAH87064.1| TIA1 cytotoxic granule-associated RNA binding protein [Rattus
norvegicus]
gi|149036619|gb|EDL91237.1| rCG56007, isoform CRA_c [Rattus norvegicus]
Length = 375
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
N VY G + +T +++++ FS GQ++ +V G+ F+ FSS E
Sbjct: 201 GNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFIRFSSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKC 270
>gi|47228429|emb|CAG05249.1| unnamed protein product [Tetraodon nigroviridis]
Length = 411
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I D T + FV A A I +N
Sbjct: 1 YVGNLSRDVTEALILELFGQIGPCKSCKMIVD--TAGHDPYCFVEFYEHRHATATIAAMN 58
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G +I G+E+KVN P Q +D++ S + V+VG+L+ +T++ +K F
Sbjct: 59 GRKILGKEVKVNWATTPTSQ-------KKDTS---SHFHVFVGDLSPEITTDDIKAAFGP 108
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ +V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 109 FGKISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 162
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ +S DT S F V++G++ I D++ G + V+ D TG+S+ + F
Sbjct: 74 TPTSQKKDTSSHF--HVFVGDLSPEITTDDIKAAFGPFGKISDCRVVKDMATGKSKGYGF 131
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 132 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTTNETTNTKQLSFDEVVNQSSP 191
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS G ++ +V G+ FV F+S E
Sbjct: 192 SNCT-----VYCGGVTTGLTEQIMRQTFSPFGHIMEIRVF------PDKGYSFVRFNSHE 240
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 241 AAAHAIVSVNGTTIEGYVVKC 261
>gi|296223620|ref|XP_002757701.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Callithrix
jacchus]
gi|403260488|ref|XP_003922703.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 375
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 201 SNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKC 270
>gi|380816028|gb|AFE79888.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
gi|383421175|gb|AFH33801.1| nucleolysin TIA-1 isoform p40 isoform 1 [Macaca mulatta]
Length = 375
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 201 SNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKC 270
>gi|188219593|ref|NP_071320.2| nucleolysin TIA-1 isoform p40 isoform 1 [Homo sapiens]
gi|114577932|ref|XP_001141475.1| PREDICTED: uncharacterized protein LOC459303 isoform 1 [Pan
troglodytes]
gi|397521826|ref|XP_003830987.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Pan paniscus]
gi|119620229|gb|EAW99823.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_a [Homo sapiens]
gi|410254976|gb|JAA15455.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298558|gb|JAA27879.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353837|gb|JAA43522.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 375
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 201 SNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKC 270
>gi|387017378|gb|AFJ50807.1| Nucleolysin TIA-1 isoform p40 [Crotalus adamanteus]
Length = 392
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 15/187 (8%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVD-------LSLLQAEDSNFVDSPYKVYVGNLAK 191
+ +NG +I G+E+KVN P Q ++ L+++D + V+VG+L+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVNTLRSQDH------FHVFVGDLSP 115
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
+T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G+
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 252 RIRVNKA 258
+IR N A
Sbjct: 176 QIRTNWA 182
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 15/202 (7%)
Query: 63 AEETASSSSSSVDT-PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V+T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVNTLRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD- 179
S+ + FV DA I+++ G +GGR+I+ N T KP A+ ++ D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNAKQLSYDDV 205
Query: 180 ----SP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
SP VY G + +T +++++ FS GQ++ +V G+ FV F+S
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSH 259
Query: 234 EDAEAAISSLNNSLLEGQRIRV 255
E A AI S+N + +EG ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKC 281
>gi|344250807|gb|EGW06911.1| Nucleolysin TIA-1 [Cricetulus griseus]
Length = 387
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYELNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ+L +V G+ F+
Sbjct: 206 VSQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQILEIRVF------PDKGYSFI 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|6755783|ref|NP_035715.1| nucleolysin TIA-1 isoform 1 [Mus musculus]
gi|1729966|sp|P52912.1|TIA1_MOUSE RecName: Full=Nucleolysin TIA-1; AltName: Full=RNA-binding protein
TIA-1; AltName: Full=T-cell-restricted intracellular
antigen-1; Short=TIA-1
gi|437057|gb|AAA03711.1| TIA [Mus musculus]
gi|1616673|gb|AAC52871.1| RNA binding protein TIA-1 [Mus musculus]
gi|26353510|dbj|BAC40385.1| unnamed protein product [Mus musculus]
gi|74188216|dbj|BAE25782.1| unnamed protein product [Mus musculus]
gi|148666751|gb|EDK99167.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_a
[Mus musculus]
Length = 386
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 25/202 (12%)
Query: 68 SSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
+SSS+ V T S+ V++G++ I +++ G + A V+ D TG+S+ +
Sbjct: 91 TSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAE 173
FV DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 151 FVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSS 210
Query: 174 DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
+N VY G + +T +++++ FS GQ++ +V G+ FV FSS
Sbjct: 211 PNNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSSH 259
Query: 234 EDAEAAISSLNNSLLEGQRIRV 255
E A AI S+N + +EG ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKC 281
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP D + F D+P + +++GNL+ + +
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAI 283
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V FS+ EDA+ A+ +L ++ + +R++
Sbjct: 284 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+ P ++VG L+ ++ E LKK F G V+ A+V+ GT +S G+G+V F ++ AE
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 223
Query: 238 AAISSLNNSLLEGQRIRVN 256
AI + ++G+ I +
Sbjct: 224 KAIQEMQGKEIDGRPINCD 242
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ N D D + ++ +HG V + T + + F +V +E
Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 319
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA ++ L G I R ++++ +
Sbjct: 320 DAKKALDALQGEYIDNRPVRLDFS 343
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++
Sbjct: 172 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 231
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP D + F D+P + +++GNL+ + +
Sbjct: 232 QGKEIDGRPINCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAI 285
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V FS+ EDA+ A+ +L ++ + +R++
Sbjct: 286 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 343
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+ P ++VG L+ ++ E LKK F G V+ A+V+ GT +S G+G+V F ++ AE
Sbjct: 166 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 225
Query: 238 AAISSLNNSLLEGQRIRVN 256
AI + ++G+ I +
Sbjct: 226 KAIQEMQGKEIDGRPINCD 244
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ N D D + ++ +HG V + T + + F +V +E
Sbjct: 262 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 321
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA ++ L G I R ++++ +
Sbjct: 322 DAKKALDALQGEYIDNRPVRLDFS 345
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++
Sbjct: 174 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 233
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP D + F D+P + +++GNL+ + +
Sbjct: 234 QGKEIDGRPINCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAI 287
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V FS+ EDA+ A+ +L ++ + +R++
Sbjct: 288 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 345
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+ P ++VG L+ ++ E LKK F G V+ A+V+ GT +S G+G+V F ++ AE
Sbjct: 168 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 227
Query: 238 AAISSLNNSLLEGQRIRVN 256
AI + ++G+ I +
Sbjct: 228 KAIQEMQGKEIDGRPINCD 246
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ N D D + ++ +HG V + T + + F +V +E
Sbjct: 264 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 323
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA ++ L G I R ++++ +
Sbjct: 324 DAKKALDALQGEYIDNRPVRLDFS 347
>gi|351714346|gb|EHB17265.1| Nucleolysin TIA-1 isoform p40 [Heterocephalus glaber]
Length = 386
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VSQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+TP+ VY+ N+P+ I DEL K + G + A V+ D+ +G SR F FV + E
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTE 280
Query: 135 DANAVIEKLNGTEIG------GREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVG 187
A + +EK+NG +G GR K + E+ L + Q + F S +Y+
Sbjct: 281 AAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRR---KFEQERINRFEKSQGANLYLK 337
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL +V E LK+ FSE G V S+KV+ P S GFGFV +S+ E+A A+S +N +
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKM 396
Query: 248 L 248
+
Sbjct: 397 I 397
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y G++ + L + + V V D+ RS +A++ DA +E L
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + R I++ ++ + + S + +++ NL ++ ++ L + FS
Sbjct: 110 NYTPLFDRPIRIMLSNR------------DPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + T +S G+GFV F EE A+AAI LN L+ +++ V
Sbjct: 158 SFGTILSCKVA-MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++D+++L ++ E+G V ++V+ + G SR F FV E+A + ++
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEM 392
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + + + ++
Sbjct: 393 NGKMIGRKPLYIALAQR 409
>gi|387762942|ref|NP_001248687.1| TIA1 cytotoxic granule-associated RNA binding protein [Macaca
mulatta]
gi|84579193|dbj|BAE73030.1| hypothetical protein [Macaca fascicularis]
gi|355565763|gb|EHH22192.1| hypothetical protein EGK_05415 [Macaca mulatta]
gi|355751389|gb|EHH55644.1| hypothetical protein EGM_04890 [Macaca fascicularis]
gi|380816026|gb|AFE79887.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
gi|383421173|gb|AFH33800.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
gi|384949108|gb|AFI38159.1| nucleolysin TIA-1 isoform p40 isoform 2 [Macaca mulatta]
Length = 386
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|390474361|ref|XP_003734771.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Callithrix jacchus]
gi|403260486|ref|XP_003922702.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 386
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++
Sbjct: 172 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 231
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP D + F D+P + +++GNL+ + +
Sbjct: 232 QGKEIDGRPINCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAI 285
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V FS+ EDA+ A+ +L ++ + +R++
Sbjct: 286 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 343
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+ P ++VG L+ ++ E LKK F G V+ A+V+ GT +S G+G+V F ++ AE
Sbjct: 166 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 225
Query: 238 AAISSLNNSLLEGQRIRVN 256
AI + ++G+ I +
Sbjct: 226 KAIQEMQGKEIDGRPINCD 244
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ N D D + ++ +HG V + T + + F +V +E
Sbjct: 262 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 321
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA ++ L G I R ++++ +
Sbjct: 322 DAKKALDALQGEYIDNRPVRLDFS 345
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP D + F D+P + +++GNL+ + +
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAI 283
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V FS+ EDA+ A+ +L ++ + +R++
Sbjct: 284 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+ P ++VG L+ ++ E LKK F G V+ A+V+ GT +S G+G+V F ++ AE
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 223
Query: 238 AAISSLNNSLLEGQRIRVN 256
AI + ++G+ I +
Sbjct: 224 KAIQEMQGKEIDGRPINCD 242
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ N D D + ++ +HG V + T + + F +V +E
Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 319
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA ++ L G I R ++++ +
Sbjct: 320 DAKKALDALQGEYIDNRPVRLDFS 343
>gi|84579137|dbj|BAE73002.1| hypothetical protein [Macaca fascicularis]
Length = 385
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|188219591|ref|NP_071505.2| nucleolysin TIA-1 isoform p40 isoform 2 [Homo sapiens]
gi|114577930|ref|XP_001141557.1| PREDICTED: uncharacterized protein LOC459303 isoform 2 [Pan
troglodytes]
gi|397521824|ref|XP_003830986.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Pan paniscus]
gi|206729905|sp|P31483.3|TIA1_HUMAN RecName: Full=Nucleolysin TIA-1 isoform p40; AltName:
Full=RNA-binding protein TIA-1; AltName:
Full=T-cell-restricted intracellular antigen-1;
Short=TIA-1; AltName: Full=p40-TIA-1
gi|62702267|gb|AAX93193.1| unknown [Homo sapiens]
gi|119620230|gb|EAW99824.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_b [Homo sapiens]
gi|261861076|dbj|BAI47060.1| TIA1 cytotoxic granule-associated RNA binding protein [synthetic
construct]
gi|410226260|gb|JAA10349.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410254978|gb|JAA15456.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410298556|gb|JAA27878.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
gi|410353839|gb|JAA43523.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 386
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|367043706|ref|XP_003652233.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
gi|346999495|gb|AEO65897.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
Length = 533
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 11/187 (5%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE + +++GN+ +D++ L + Q + V A V+ DK +GRSR F +V +T E A
Sbjct: 284 SEKSATLFVGNLGWGVDDNALYEEFQNNEGVTGARVVTDKDSGRSRGFGYVDFETPEAAE 343
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDS---NFVDSPYK--VYVGNLAKT 192
NG + GRE++++ KP + AE + V SP ++VGNL+ +
Sbjct: 344 KAYNDKNGAFLQGREMRLDFAAKPSADSTPNARAAERARKHGDVISPESDTLFVGNLSFS 403
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSS---GFGFVTFSSEEDAEAAISSLNNSLLE 249
E + F++ +V S LR+P +S GF +VTFSS +DA+AA +LN S L+
Sbjct: 404 ANEESVSAFFNKVAKVQS---LRIPTDQESGRPKGFAYVTFSSVDDAKAAFEALNGSDLD 460
Query: 250 GQRIRVN 256
G+ +R++
Sbjct: 461 GRPVRLD 467
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 45/76 (59%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+ + + + ++ + V+ + D+ +GR + FA+V +V+DA A E L
Sbjct: 395 LFVGNLSFSANEESVSAFFNKVAKVQSLRIPTDQESGRPKGFAYVTFSSVDDAKAAFEAL 454
Query: 144 NGTEIGGREIKVNITE 159
NG+++ GR ++++ +
Sbjct: 455 NGSDLDGRPVRLDFAK 470
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+TP+ VY+ N+P+ I DEL K + G + A V+ D+ +G SR F FV + E
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTE 280
Query: 135 DANAVIEKLNGTEIG------GREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVG 187
A + +EK+NG +G GR K + E+ L + Q + F S +Y+
Sbjct: 281 AAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRR---KFEQERINRFEKSQGANLYLK 337
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL +V E LK+ FSE G V S+KV+ P S GFGFV +S+ E+A A+S +N +
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKM 396
Query: 248 L 248
+
Sbjct: 397 I 397
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y G++ + L + + V V D+ RS +A++ DA +E L
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + R I++ ++ + + S + +++ NL ++ ++ L + FS
Sbjct: 110 NYTPLFDRPIRIMLSNR------------DPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + T +S G+GFV F EE A+AAI LN L+ +++ V
Sbjct: 158 SFGTILSCKVA-MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++D+++L ++ E+G V ++V+ + G SR F FV E+A + ++
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEM 392
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + + + ++
Sbjct: 393 NGKMIGRKPLYIALAQR 409
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR V++ + I +L G + +I D T RS+ A+V + VE A +
Sbjct: 103 ARTVFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLAL 162
Query: 141 EKLNGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
L GT + G I++ + EK V SL + N P K+Y+G+L +T EML
Sbjct: 163 -GLTGTRLLGVPIQIQQSHAEKNRVSATPSLPRPSQQN--KGPMKLYIGSLHYNITEEML 219
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
K F G++ K+++ P T++S G+GFVT+ + +DA+ A+ LN L G+ ++VN
Sbjct: 220 KGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQLNGFELAGRPMKVN 277
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 12/116 (10%)
Query: 57 TRLFAV--------AEETASSSSSSVDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEH 105
TRL V AE+ S++ S+ PS+ + ++YIG++ NI + L I +
Sbjct: 167 TRLLGVPIQIQQSHAEKNRVSATPSLPRPSQQNKGPMKLYIGSLHYNITEEMLKGIFEPF 226
Query: 106 GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEK 160
G +E ++I D T RS+ + FV +DA +++LNG E+ GR +KVN +TE+
Sbjct: 227 GKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQLNGFELAGRPMKVNHVTER 282
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|348566571|ref|XP_003469075.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Cavia porcellus]
Length = 388
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VSQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+TP+ VY+ N+P+ I DEL K + G + A V+ D+ +G SR F FV + E
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTE 280
Query: 135 DANAVIEKLNGTEIG------GREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVG 187
A + +EK+NG +G GR K + E+ L + Q + F S +Y+
Sbjct: 281 AAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRR---KFEQERINRFEKSQGANLYLK 337
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL +V E LK+ FSE G V S+KV+ P S GFGFV +S+ E+A A+S +N +
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKM 396
Query: 248 L 248
+
Sbjct: 397 I 397
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y G++ + L + + V V D+ RS +A++ DA +E L
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + R I++ ++ + + S + +++ NL ++ ++ L + FS
Sbjct: 110 NYTPLFDRPIRIMLSNR------------DPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + T +S G+GFV F EE A+AAI LN L+ +++ V
Sbjct: 158 SFGTILSCKVA-MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++D+++L ++ E+G V ++V+ + G SR F FV E+A + ++
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEM 392
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + + + ++
Sbjct: 393 NGKMIGRKPLYIALAQR 409
>gi|149036617|gb|EDL91235.1| rCG56007, isoform CRA_a [Rattus norvegicus]
Length = 386
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 25/202 (12%)
Query: 68 SSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
+SSS+ V T S+ V++G++ I +++ G + A V+ D TG+S+ +
Sbjct: 91 TSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAE 173
FV DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 151 FVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSS 210
Query: 174 DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
N VY G + +T +++++ FS GQ++ +V G+ F+ FSS
Sbjct: 211 PGNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFIRFSSH 259
Query: 234 EDAEAAISSLNNSLLEGQRIRV 255
E A AI S+N + +EG ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKC 281
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N+P + +DEL+K+ E G V A V+ D+ G S+ F F+ K E A +E L
Sbjct: 203 VFVKNLPAELGDDELSKMATEFGEVTSAVVMKDE-KGSSKGFGFINFKDAECAAKCVEAL 261
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN----FVDSPYKVYVGNLAKTVTSEMLK 199
N EIGG+ + +K + + + E+S +YV NLA V + L+
Sbjct: 262 NDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLADEVDDDALR 321
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+ G + S KV++ + KS GFGFV F+S ++A A++ +N +++G+ + V
Sbjct: 322 DLFTSCGTITSCKVMK-DTSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYV 376
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 16/176 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV---I 140
+Y+G++ +++ +L ++ G V V D T RS +A+V + D A +
Sbjct: 23 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAERAM 82
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E LN + G+ +++ + + D S ++ N +++ NL K++ ++ L
Sbjct: 83 ETLNYHVLNGKPMRIMWSHR-----DPSARKSGVGN-------IFIKNLDKSIDAKALHD 130
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
FS G++LS KV S G+GFV F + A+ AI ++N +EG+ + V
Sbjct: 131 TFSAFGKILSCKVA-TDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVG 185
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++ID L G + +V D G S+ + FV + A+ I+ +
Sbjct: 114 IFIKNLDKSIDAKALHDTFSAFGKILSCKVATDA-NGVSKGYGFVHFEDQAAADRAIQTV 172
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N EI G+ + V +K +A+ D V+V NL + + L K +
Sbjct: 173 NQKEIEGKIVYVGPFQK----------RADRPQGKDVYTNVFVKNLPAELGDDELSKMAT 222
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G+V SA V++ S S GFGF+ F E A + +LN+ + G+ + +A
Sbjct: 223 EFGEVTSAVVMKDEKGS-SKGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRA 276
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D+D L + G + +V+ D +G+S+ F FV + ++A + ++
Sbjct: 306 LYVKNLADEVDDDALRDLFTSCGTITSCKVMKDT-SGKSKGFGFVCFTSHDEATRAVTEM 364
Query: 144 NGTEIGGREIKVNITEK 160
NG + G+ + V + ++
Sbjct: 365 NGKMVKGKPLYVALAQR 381
>gi|301758210|ref|XP_002914948.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2 [Ailuropoda
melanoleuca]
gi|410954993|ref|XP_003984143.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Felis catus]
Length = 375
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 201 SNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKC 270
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|62088002|dbj|BAD92448.1| TIA1 protein variant [Homo sapiens]
Length = 464
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 42 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 99
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 100 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 159
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 160 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 219
Query: 258 A 258
A
Sbjct: 220 A 220
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 66/248 (26%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 124 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 183
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGG------------------------------- 150
S+ + FV DA I+++ G +GG
Sbjct: 184 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYECRCIGEEKEMW 243
Query: 151 ---------------------REIKVNITEKPLVQV--DLSLLQAEDSNFVDSPYKVYVG 187
++IK I + Q+ D + Q+ SN VY G
Sbjct: 244 NFGEKYARFSCSRRLIAEIDEKQIKTTIQKSNTKQLSYDEVVNQSSPSNCT-----VYCG 298
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
+ +T +++++ FS GQ++ +V G+ FV F+S E A AI S+N +
Sbjct: 299 GVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHESAAHAIVSVNGTT 352
Query: 248 LEGQRIRV 255
+EG ++
Sbjct: 353 IEGHVVKC 360
>gi|365986018|ref|XP_003669841.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
gi|343768610|emb|CCD24598.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Length = 426
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 11/178 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++
Sbjct: 173 IFVGRLSWSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFEDKSYAEKAIQEM 232
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I V++ T KP D + F D P + +++GNL+ + +
Sbjct: 233 QGKEIDGRPINVDMSTSKPAGGNDRA------KKFGDVPSEPSDTLFLGNLSFNADKDNI 286
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ FS+ G+++S ++ P T + GFG+V FS+ EDA+ A+ L ++ + +R++
Sbjct: 287 YETFSKYGEIISVRIPTHPETEQPKGFGYVQFSNIEDAKKALEGLQGEYIDNRAVRLD 344
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ ++ E LKK F G V+ A+V+ GT +S G+G+V F + AE AI
Sbjct: 170 PATIFVGRLSWSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFEDKSYAEKAI 229
Query: 241 SSLNNSLLEGQRIRVN 256
+ ++G+ I V+
Sbjct: 230 QEMQGKEIDGRPINVD 245
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|16198525|gb|AAH15944.1| TIA1 protein [Homo sapiens]
gi|119620232|gb|EAW99826.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_d [Homo sapiens]
gi|119620233|gb|EAW99827.1| TIA1 cytotoxic granule-associated RNA binding protein, isoform
CRA_d [Homo sapiens]
Length = 214
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 68 SSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
+SSS+ V T S+ V++G++ I +++ G + A V+ D TG+S+ +
Sbjct: 91 TSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP 161
FV DA I+++ G +GGR+I+ N T KP
Sbjct: 151 FVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 97 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 154
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 155 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 207
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P T KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 208 SQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 262
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D TG+S+ F FV + EDAN +E++
Sbjct: 189 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEM 247
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 248 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 305
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + A+V+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 306 LRKEFSPFGSITRAEVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 354
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ +AEV+ + GRS+ F FV + E+A + ++
Sbjct: 292 LYIKNLDDTIDDEKLRKEFSPFGSITRAEVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 349
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 350 NGRIVGSKPLYVALAQR 366
>gi|344283909|ref|XP_003413713.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Loxodonta
africana]
Length = 375
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 201 SNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKC 270
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 206 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 264
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 265 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 322
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 323 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 371
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 114 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 171
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 172 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 224
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 225 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 279
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 309 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 366
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 367 NGRIVGSKPLYVALAQR 383
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED-------- 235
+YVG+L VT ML + FS G VLS V R T +S G+ +V F D
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTSTSS 72
Query: 236 -----AEAAISSLNNSLLEGQRIRV 255
E A+ ++N +++G+ IR+
Sbjct: 73 SPLTVTERALDTMNFDVIKGKPIRI 97
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+D+L I +++G + A+V+ D +G++R F FV + + A +E+L
Sbjct: 194 VYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDD-SGKNRGFGFVSFEEPDSAERAVEEL 252
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG ++GGR + V +K ++ L+ E N +YV NL + E L
Sbjct: 253 NGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQG-VNLYVKNLDDALDDERL 311
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K F G + SAKV+ +S GFGFV FSS E+A A++ +N ++
Sbjct: 312 RKEFGPFGNITSAKVM-TDANGRSKGFGFVCFSSPEEATKAVTEMNGRIV 360
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + L + G V V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I + I++ +++ D SL ++ N V++ NL KT+ ++ + FS
Sbjct: 73 NFDAIKNKPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKTIDNKAMYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS +V + S G+GFV F +EE A AIS +N LL +++ V K
Sbjct: 121 AFGNILSCRVA-TDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGK 173
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 12/177 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ + IDN + G + V D+ S+ + FV +T E AN I K+
Sbjct: 101 VFIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAA-SKGYGFVHFETEEAANKAISKV 159
Query: 144 NGTEIGGREIKVN--ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + +++ V I K + +L + F + VY+ N + + L
Sbjct: 160 NGMLLNNKKVYVGKFIPRKEREK----MLGDKARCFTN----VYIKNFGDELDDDKLLVI 211
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + G++ SAKV+ + K+ GFGFV+F + AE A+ LN + G+ + V +A
Sbjct: 212 FEKYGKITSAKVM-TDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRA 267
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D++ L K G + A+V+ D GRS+ F FV + E+A + ++
Sbjct: 297 LYVKNLDDALDDERLRKEFGPFGNITSAKVMTDA-NGRSKGFGFVCFSSPEEATKAVTEM 355
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 356 NGRIVVSKPLYVALAQR 372
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|426223384|ref|XP_004005855.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Ovis aries]
Length = 375
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDI 111
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 112 KAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 83 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 140
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 141 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSP 200
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 201 SNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHE 249
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKC 270
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRA 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRA 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|224128049|ref|XP_002320231.1| predicted protein [Populus trichocarpa]
gi|222861004|gb|EEE98546.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 11/165 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+PR+ D +L ++ + G+V EV + TG SR ++ M +VE A + L
Sbjct: 103 LYVCNLPRSSDIADLVEMFKPFGSVLSVEVSRNPETGVSRGCGYITMGSVESARNAVSAL 162
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN-------FVDSPYKVYVGNLAKTVTSE 196
+G+++GGRE++V + V++ E N F +SP+K+YVGNL + +
Sbjct: 163 DGSDVGGREMRVRYS----VEISSGRRNPEALNSAPTKHLFYESPHKLYVGNLPWSTKPD 218
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
L+ F+ G V+SA+VL K+ + F++F S+ + +AA+S
Sbjct: 219 ELRNLFNHFGIVVSARVLSDRKGGKNRTYAFLSFLSDAERDAALS 263
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++YV NL ++ L + F G VLS +V R P T S G G++T S E A A+
Sbjct: 100 PCELYVCNLPRSSDIADLVEMFKPFGSVLSVEVSRNPETGVSRGCGYITMGSVESARNAV 159
Query: 241 SSLNNSLLEGQRIRV 255
S+L+ S + G+ +RV
Sbjct: 160 SALDGSDVGGREMRV 174
>gi|395507384|ref|XP_003758005.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Sarcophilus harrisii]
Length = 394
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +
Sbjct: 8 MYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 65
Query: 144 NGTEIGGREIKVNITEKPLVQVD-------LSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG +I G+E+KVN P Q +S L+++D + V+VG+L+ +T+E
Sbjct: 66 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTLRSQDH------FHVFVGDLSPEITTE 119
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 120 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 179
Query: 257 KA 258
A
Sbjct: 180 WA 181
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 15/202 (7%)
Query: 63 AEETASSSSSSVDT-PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 85 SQKKDTSSSTVVSTLRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 144
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDS 175
S+ + FV DA I+++ G +GGR+I+ N T KP + + L +D
Sbjct: 145 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDV 204
Query: 176 NFVDSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
SP VY G + +T +++++ FS GQ++ +V G+ FV F+S
Sbjct: 205 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSH 258
Query: 234 EDAEAAISSLNNSLLEGQRIRV 255
E A AI S+N + +EG ++
Sbjct: 259 ESAAHAIVSVNGTTIEGHVVKC 280
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 168 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 226
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 227 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 284
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 285 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 333
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 76 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 133
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 134 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 186
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 187 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 241
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
ML + FS G VLS +V R T +S G+ +V F DAE A+ ++N +++G+ IR+
Sbjct: 1 MLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 59
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 271 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 328
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 329 NGRIVGSKPLYVALAQR 345
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|297741610|emb|CBI32742.3| unnamed protein product [Vitis vinifera]
Length = 127
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 112 EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQ 171
EVIYDK TGRSR F FV M TVE+ A ++ NG E+ GR+++VN P
Sbjct: 3 EVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPP---------- 52
Query: 172 AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
A N L+ FSE+G+V A+V+ T +S GFGFVT++
Sbjct: 53 ARREN--------------------TLETLFSEQGKVTEARVIYDRETGRSRGFGFVTYN 92
Query: 232 SEEDAEAAISSLNNSLLEGQRIRVNKA 258
S E+ AI SL+ L G+ IRV A
Sbjct: 93 SAEEVNRAIESLDGVDLNGRSIRVTMA 119
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RV G P +N L + E G V +A VIYD+ TGRSR F FV + E+ N IE
Sbjct: 45 RVNSGPPPARRENT-LETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIES 103
Query: 143 LNGTEIGGREIKVNITE-KPLVQ 164
L+G ++ GR I+V + E +P Q
Sbjct: 104 LDGVDLNGRSIRVTMAEARPRRQ 126
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+TP+ VY+ N+P+ I DEL K + G + A V+ D+ +G SR F FV + E
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTE 280
Query: 135 DANAVIEKLNGTEIG------GREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVG 187
A + +EK+NG +G GR K + E+ L + Q + F S +Y+
Sbjct: 281 AAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRR---KFEQERINRFEKSQGANLYLK 337
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL +V E LK+ FSE G V S+KV+ P S GFGFV +S+ E+A A+S +N +
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGLSRGFGFVAYSNPEEALRALSEMNGKM 396
Query: 248 L 248
+
Sbjct: 397 I 397
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 26/195 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
AVA++T +SS +Y G++ + L + + V V D+
Sbjct: 40 AVADQTHPNSS------------LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NR 86
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS 180
RS +A++ DA +E LN T + R I++ ++ + + S +
Sbjct: 87 RSLGYAYINFSNPNDAYRAMEALNYTPLFERPIRIMLSNR------------DPSTRLSG 134
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
+++ NL ++ ++ L + FS G +LS KV + T +S G+GFV F EE A+AAI
Sbjct: 135 KGNIFIKNLDASIDNKALFETFSSFGTILSCKVA-MDVTGRSKGYGFVQFEKEESAQAAI 193
Query: 241 SSLNNSLLEGQRIRV 255
LN L+ +++ V
Sbjct: 194 DKLNGMLMNDKQVFV 208
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++D+++L ++ E+G V ++V+ + G SR F FV E+A + ++
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGLSRGFGFVAYSNPEEALRALSEM 392
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + + + ++
Sbjct: 393 NGKMIGKKPLYIALAQR 409
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|47086779|ref|NP_997793.1| cytotoxic granule-associated RNA binding protein 1 [Danio rerio]
gi|28279551|gb|AAH45368.1| Cytotoxic granule-associated RNA binding protein 1 [Danio rerio]
Length = 386
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 5 EQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAA 62
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+ +NG +I G+E+KVN P Q + + SN + V+VG+L+ +T++ +
Sbjct: 63 SLAAMNGRKIMGKEVKVNWATSPSSQ------KKDTSNH----FHVFVGDLSPEITTDDI 112
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 113 RAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 172
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
S SS DT + F V++G++ I D++ G + A V+ D TG+S+ + F
Sbjct: 84 SPSSQKKDTSNHF--HVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGF 141
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP------------LVQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 142 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSP 201
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 202 SNCT-----VYCGGVTTGLTEQLMRQTFSPFGQIMEVRVF------PDKGYSFVRFNSHE 250
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + LEG ++
Sbjct: 251 SAAHAIVSVNGTSLEGHIVKC 271
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|37681959|gb|AAQ97857.1| TIA1 cytotoxic granule-associated RNA binding protein [Danio rerio]
gi|160773363|gb|AAI55270.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
++ SS DT + F V++G++ I D++ G + A V+ D TG+S+ +
Sbjct: 84 STPSSQKKDTSNHF--HVFVGDLSPEISTDDVRAAFAPFGKISDARVVRDLATGKSKGYG 141
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP-------------LVQVDLSLLQA 172
F+ DA + I+++NG +GGR+I+ N T KP + + L Q+
Sbjct: 142 FISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQS 201
Query: 173 EDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232
SN VY G +A ++ +++++ FS GQ++ +V G+ FV F S
Sbjct: 202 SPSNCT-----VYCGGIASGLSDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFDS 250
Query: 233 EEDAEAAISSLNNSLLEGQRIRV 255
E A AI S+N + +EG ++
Sbjct: 251 HEGAAHAIVSVNGTCIEGHTVKC 273
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 98/177 (55%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I D T + + FV A A +
Sbjct: 9 RTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRHAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+++KVN P Q + + SN + V+VG+L+ ++++ ++
Sbjct: 67 AMNGRKILGKDMKVNWASTPSSQ------KKDTSNH----FHVFVGDLSPEISTDDVRAA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V+R T KS G+GF++F ++ DAE+AI +N L G++IR N A
Sbjct: 117 FAPFGKISDARVVRDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWA 173
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D P +YVGNL++ VT ++ + FS+ G S K++ T+ + + FV F A A
Sbjct: 6 DQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMIL--DTTGNDPYCFVEFYENRHAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKDMKVNWA 83
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E AN IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E L++ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLRELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|336376899|gb|EGO05234.1| hypothetical protein SERLA73DRAFT_44756 [Serpula lacrymans var.
lacrymans S7.3]
Length = 523
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 72 SSVDTPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFV 128
+ P+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV
Sbjct: 2 GGMGGPAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFV 61
Query: 129 MMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGN 188
+ A ++ LNG +I EI+VN + ED+ Y V+VG+
Sbjct: 62 EYMDMRAAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTT---GHYHVFVGD 111
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+ V E+L K FS G + A+V+ + KS G+GF+ F + DAE AI+++N L
Sbjct: 112 LSPEVNDEILGKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWL 171
Query: 249 EGQRIRVNKA 258
+ IRVN A
Sbjct: 172 GSRAIRVNWA 181
>gi|41055734|ref|NP_956476.1| TIA1 cytotoxic granule-associated RNA binding protein 1 [Danio
rerio]
gi|28277744|gb|AAH45485.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
gi|44890544|gb|AAH66734.1| Cytotoxic granule-associated RNA binding protein 1, like [Danio
rerio]
Length = 342
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 27/203 (13%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
++ SS DT + F V++G++ I D++ G + A V+ D TG+S+ +
Sbjct: 84 STPSSQKKDTSNHF--HVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYG 141
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP-------------LVQVDLSLLQA 172
F+ DA + I+++NG +GGR+I+ N T KP + + L Q+
Sbjct: 142 FISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQS 201
Query: 173 EDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232
SN VY G +A ++ +++++ FS GQ++ +V G+ FV F S
Sbjct: 202 SPSNCT-----VYCGGIASGLSDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFDS 250
Query: 233 EEDAEAAISSLNNSLLEGQRIRV 255
E A AI S+N + +EG ++
Sbjct: 251 HEGAAHAIVSVNGTCIEGHTVKC 273
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 98/177 (55%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I D T + + FV A A +
Sbjct: 9 RTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRHAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+++KVN P Q + + SN + V+VG+L+ ++++ ++
Sbjct: 67 AMNGRKILGKDMKVNWASTPSSQ------KKDTSNH----FHVFVGDLSPEISTDDVRAA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GF++F ++ DAE+AI +N L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWA 173
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D P +YVGNL++ VT ++ + FS+ G S K++ T+ + + FV F A A
Sbjct: 6 DQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMIL--DTTGNDPYCFVEFYENRHAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKDMKVNWA 83
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 105/180 (58%), Gaps = 4/180 (2%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P++ +++Y+ N+ ++ ++T + + G V E+I K GRS+ +AFV M + E+A
Sbjct: 68 PTDNVKKLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSK-DGRSKGYAFVTMASGEEA 126
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
A ++K + E+ GR I+V + ++ ++ SL ++ + +Y NLA S
Sbjct: 127 QAAVDKFDSYELSGRIIRVELAKR--LKKPPSLPPPPGPRPGETRHVIYASNLAWKARST 184
Query: 197 MLKKCFSEKGQVLS-AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
L++ F+E + S A+V+ + +S+G+GFV+F + EDAEAAIS+++ L G+ +R+
Sbjct: 185 HLRQVFTENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAISTVDGKELMGRPLRL 244
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEH-GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+Y N+ + L ++ E+ A V++D +GRS + FV T EDA A I
Sbjct: 172 IYASNLAWKARSTHLRQVFTENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAIST 231
Query: 143 LNGTEIGGREIKVNITEK 160
++G E+ GR +++ +EK
Sbjct: 232 VDGKELMGRPLRLKFSEK 249
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
D+ K+YV NL+ ++T+ + F++ G V ++++ +S G+ FVT +S E+A+
Sbjct: 69 TDNVKKLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSK-DGRSKGYAFVTMASGEEAQ 127
Query: 238 AAISSLNNSLLEGQRIRVNKA 258
AA+ ++ L G+ IRV A
Sbjct: 128 AAVDKFDSYELSGRIIRVELA 148
>gi|115497910|ref|NP_001069577.1| nucleolysin TIA-1 isoform p40 [Bos taurus]
gi|111308630|gb|AAI20428.1| TIA1 cytotoxic granule-associated RNA binding protein [Bos taurus]
gi|296482421|tpg|DAA24536.1| TPA: TIA1 cytotoxic granule-associated RNA binding protein [Bos
taurus]
Length = 384
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|73969892|ref|XP_866571.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 9 [Canis lupus
familiaris]
gi|301758208|ref|XP_002914947.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 1 [Ailuropoda
melanoleuca]
gi|410954995|ref|XP_003984144.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 2 [Felis catus]
gi|431912606|gb|ELK14624.1| Nucleolysin TIA-1 isoform p40 [Pteropus alecto]
Length = 386
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E AN IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E L++ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLRELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|426223382|ref|XP_004005854.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Ovis aries]
gi|440907815|gb|ELR57912.1| Nucleolysin TIA-1 isoform p40 [Bos grunniens mutus]
Length = 386
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E AN IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E L++ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLRELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMR-DCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E AN IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E L++ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDENLRELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMR-DCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|410083501|ref|XP_003959328.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
gi|372465919|emb|CCF60193.1| hypothetical protein KAFR_0J01260 [Kazachstania africana CBS 2517]
Length = 365
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 12/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YIGN+ ++I+ D L + Q G + +V+ DK +AF+ T DAN ++ L
Sbjct: 33 LYIGNLDKSINEDALKQYFQVAGQIVDVKVMVDKKNNHVN-YAFIEYSTNHDANVALQTL 91
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG +I + IK+N Q++ + D+ + +++G+L V L F
Sbjct: 92 NGIQIENKNIKINWA-----------FQSQTNLNDDTSFNLFIGDLNVNVDDTTLANAFK 140
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
L A V+ TS+S G+GFV+F + E+A+AA+ + + G+ IR+N A
Sbjct: 141 SCPGFLQAHVMWDMQTSRSRGYGFVSFDTHENAQAAMDQMQGHEINGRAIRINWA 195
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE+ ++ A S ++++ + F ++IG++ N+D+ L
Sbjct: 87 ALQTLNGIQIENKNIKI-----NWAFQSQTNLNDDTSF--NLFIGDLNVNVDDTTLANAF 139
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
+ +A V++D T RSR + FV T E+A A ++++ G EI GR I++N K
Sbjct: 140 KSCPGFLQAHVMWDMQTSRSRGYGFVSFDTHENAQAAMDQMQGHEINGRAIRINWATK 197
>gi|344283907|ref|XP_003413712.1| PREDICTED: nucleolysin TIA-1 isoform p40 isoform 1 [Loxodonta
africana]
Length = 386
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|336389833|gb|EGO30976.1| hypothetical protein SERLADRAFT_455426 [Serpula lacrymans var.
lacrymans S7.9]
Length = 439
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 13/193 (6%)
Query: 69 SSSSSVDTPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRF 125
+S + P+E RR +Y+GN+ + LT+I G V+ ++I D+ Y +
Sbjct: 2 NSMGGMGGPAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNY 61
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVY 185
FV + A ++ LNG +I EI+VN + ED+ Y V+
Sbjct: 62 GFVEYMDMRAAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTT---GHYHVF 111
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
VG+L+ V E+L K FS G + A+V+ + KS G+GF+ F + DAE AI+++N
Sbjct: 112 VGDLSPEVNDEILGKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNG 171
Query: 246 SLLEGQRIRVNKA 258
L + IRVN A
Sbjct: 172 EWLGSRAIRVNWA 184
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D +G+S+ F FV + EDAN +E +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANQAVEDM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ P + KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 212 SKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRA 266
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ ++ GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|392592716|gb|EIW82042.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 589
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 14/182 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ +++G + N+DND L K E G V A V D+ TGRSR F +V T E IE
Sbjct: 333 KSIFVGRLSWNVDNDWLAKEFAECGEVVSATVQMDRSTGRSRGFGYVHFSTSEAVEKAIE 392
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SP--YKVYVGNLAKTVTSEM 197
LNG EI GR + V+ + P D S + F D SP ++VGNL+ + +
Sbjct: 393 -LNGKEIDGRAVNVDKSNPP--NKDAS-REKRAKTFGDTTSPPSATLFVGNLSFGMNDDA 448
Query: 198 LKKCFSEKGQVLSAKVLRVPG---TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
L + FSE G+V K +R+P + + GFG+V FS E A+ A +++ L+G+ +R
Sbjct: 449 LWEAFSEHGEV---KNVRLPTDRESGRPKGFGYVEFSDVETAKKAHAAMQGVELDGRSVR 505
Query: 255 VN 256
++
Sbjct: 506 LD 507
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 174 DSNFVDSPYK-VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232
D+ VD+ K ++VG L+ V ++ L K F+E G+V+SA V T +S GFG+V FS+
Sbjct: 324 DAMDVDNEIKSIFVGRLSWNVDNDWLAKEFAECGEVVSATVQMDRSTGRSRGFGYVHFST 383
Query: 233 EEDAEAAISSLNNSLLEGQRIRVNKA 258
E E AI LN ++G+ + V+K+
Sbjct: 384 SEAVEKAI-ELNGKEIDGRAVNVDKS 408
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT S + +++GN+ +++D L + EHG V+ + D+ +GR + F +V VE
Sbjct: 426 DTTSPPSATLFVGNLSFGMNDDALWEAFSEHGEVKNVRLPTDRESGRPKGFGYVEFSDVE 485
Query: 135 DANAVIEKLNGTEIGGREIKVNITE 159
A + G E+ GR ++++ ++
Sbjct: 486 TAKKAHAAMQGVELDGRSVRLDFSQ 510
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|443899731|dbj|GAC77060.1| nuclear localization sequence binding protein, partial [Pseudozyma
antarctica T-34]
Length = 400
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 1/174 (0%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++G + N+DN+ L ++ G V A V D+ TG+SR F +V T A E+
Sbjct: 204 QIWVGQLSWNVDNEWLKSEMEAFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAFEE 263
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
G E+ GR I+++++ D + D S +++GNL+ ++ + + F
Sbjct: 264 GQGKEVDGRAIRIDLSTPKGDVTDNRAKKFNDQRSAPS-STLFIGNLSFDISEDDVWNAF 322
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
SE G+V ++ + P + + GFG+V F+++E A+AAI ++ L G+ +R++
Sbjct: 323 SEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAIDAMTGQELAGRPLRLD 376
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ +I D++ EHG V + D +GR + F +V E A A I+ +
Sbjct: 304 LFIGNLSFDISEDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAIDAM 363
Query: 144 NGTEIGGREIKVNIT 158
G E+ GR ++++ +
Sbjct: 364 TGQELAGRPLRLDFS 378
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|448520030|ref|XP_003868205.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis Co 90-125]
gi|380352544|emb|CCG22770.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis]
Length = 498
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 3/194 (1%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E + S S T E A ++ G + NID+D L + + V A VI ++ TG+SR
Sbjct: 239 ENKKAKSESFTTDEEPAT-IFAGRLSWNIDDDWLKREFEHLEGVISARVIMERATGKSRG 297
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK 183
+ +V + A I ++ G EI GR I +++ T KP + + + P
Sbjct: 298 YGYVDFSSKSAAENAIAEMQGKEIDGRPINLDLSTGKPHATKSNNDRARQFGDQQSPPSD 357
Query: 184 -VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
+++GNL+ + L + F E G V+S ++ P T + GFG+V FSS ++A+AA+ +
Sbjct: 358 TLFIGNLSFNANRDKLFEVFGEYGNVISCRLPTHPDTQQPKGFGYVQFSSVDEAKAALEA 417
Query: 243 LNNSLLEGQRIRVN 256
LN LEG+ R++
Sbjct: 418 LNGEYLEGRPCRLD 431
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ N + D+L ++ E+G V + T + + F +V +V++A A +E L
Sbjct: 359 LFIGNLSFNANRDKLFEVFGEYGNVISCRLPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 418
Query: 144 NGTEIGGREIKVNIT 158
NG + GR +++ +
Sbjct: 419 NGEYLEGRPCRLDFS 433
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|295789540|pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 59
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D + ++VG+L V E L+
Sbjct: 60 TLNGKQIENNIVKINWA-----------FQSQQSS-SDDTFNLFVGDLNVNVDDETLRNA 107
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ S+ L G+ +R+N A
Sbjct: 108 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 57 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 108
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 109 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|350646433|emb|CCD58930.1| fuse-binding protein-interacting repressor siahbp1, putative
[Schistosoma mansoni]
Length = 522
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I I +E+ K G ++ + +D + + FAFV + E A+ +++
Sbjct: 94 RIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLALDQ 153
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+NG + GR +KV +P + L+AE V + +VY+ ++ +T ++ F
Sbjct: 154 MNGYTLAGRNLKVG---RPSNAPQTAALEAELRAEVSTKPRVYIASVHPELTESDIQTVF 210
Query: 203 SEKGQVLSAKVLRVPGTS-KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G+V S + P S + GFG++ F SEE A AA+SS+N L GQ++RV +A
Sbjct: 211 EAFGKVNSCSLYPDPKCSGRHRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRA 267
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEMDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|343427935|emb|CBQ71460.1| related to NSR1-nuclear localization sequence binding protein
[Sporisorium reilianum SRZ2]
Length = 459
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+V++G + N+DND L ++ G V A V D+ TG+SR F +V T A E+
Sbjct: 208 QVWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAFEE 267
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKK 200
G E+ GR I+++++ + D++ +A+ N S +++GNL+ ++ + +
Sbjct: 268 GQGKEVDGRAIRLDLS---TPKGDVTENRAKKFNDQRSAPSSTLFIGNLSFDISEDDVWN 324
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
FSE G+V ++ + P + + GFG+V F+++E A+AA+ ++ L G+ +R++
Sbjct: 325 AFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAALDAMTGQELAGRPLRLD 380
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ +I D++ EHG V + D +GR + F +V E A A ++ +
Sbjct: 308 LFIGNLSFDISEDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAALDAM 367
Query: 144 NGTEIGGREIKVNIT 158
G E+ GR ++++ +
Sbjct: 368 TGQELAGRPLRLDFS 382
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 9/191 (4%)
Query: 69 SSSSSVDTPSEFARRV-YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ +S+ + E +R+V Y+G +P++I+ D L + G V +++ DK + +AF
Sbjct: 30 NPASATNGGREISRKVLYVGGLPKSINEDALNEKFSASGPVFSVKILNDK-NKQGFNYAF 88
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V A A +++ NG+ +K+N + + Q D D Y ++VG
Sbjct: 89 VEFVDEAGAAAALQEFNGSSFENSMLKINYAYQ---SSTFNATQNSD----DPTYNIFVG 141
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
+L+ V E L K FS + A V+ TS+S G+GFVTF++ DAE A+S++N +
Sbjct: 142 DLSPEVDDESLHKFFSAFESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTMNGKV 201
Query: 248 LEGQRIRVNKA 258
L G+ IR N A
Sbjct: 202 LNGRAIRCNWA 212
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L +S E+S ++ + + +++ + D P+ +++G++ +D++ L K
Sbjct: 100 ALQEFNGSSFENSMLKINYAYQSSTFNATQNSDDPT---YNIFVGDLSPEVDDESLHKFF 156
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157
++++A V++D T RSR + FV + DA + +NG + GR I+ N
Sbjct: 157 SAFESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTMNGKVLNGRAIRCNW 211
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
AR V++ + I +L G + +I D T RS+ A+V + VE A +
Sbjct: 103 ARTVFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVESAQLAL 162
Query: 141 EKLNGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
L GT + G I++ + EK V SL + N P K+Y+G+L +T EML
Sbjct: 163 -GLTGTRLLGVPIQIQQSHAEKNRVSATPSLPRPSQQN--RGPMKLYIGSLHYNITEEML 219
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
K F G++ K+++ P T++S G+GFVT+ + +DA+ A+ LN L G+ ++VN
Sbjct: 220 KGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQLNGFELAGRPMKVN 277
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 12/116 (10%)
Query: 57 TRLFAV--------AEETASSSSSSVDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEH 105
TRL V AE+ S++ S+ PS+ R ++YIG++ NI + L I +
Sbjct: 167 TRLLGVPIQIQQSHAEKNRVSATPSLPRPSQQNRGPMKLYIGSLHYNITEEMLKGIFEPF 226
Query: 106 GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEK 160
G +E ++I D T RS+ + FV +DA +++LNG E+ GR +KVN +TE+
Sbjct: 227 GKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQLNGFELAGRPMKVNHVTER 282
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|256073105|ref|XP_002572873.1| fuse-binding protein-interacting repressor siahbp1 [Schistosoma
mansoni]
Length = 534
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I I +E+ K G ++ + +D + + FAFV + E A+ +++
Sbjct: 106 RIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLALDQ 165
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+NG + GR +KV +P + L+AE V + +VY+ ++ +T ++ F
Sbjct: 166 MNGYTLAGRNLKVG---RPSNAPQTAALEAELRAEVSTKPRVYIASVHPELTESDIQTVF 222
Query: 203 SEKGQVLSAKVLRVPGTS-KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G+V S + P S + GFG++ F SEE A AA+SS+N L GQ++RV +A
Sbjct: 223 EAFGKVNSCSLYPDPKCSGRHRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRA 279
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEMDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N+ N+ ++E+ K+ EHG V ++ D+ G+S+ F F+ + E A+A + L
Sbjct: 215 VFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDE-AGKSKGFGFINFEDAEGAHAAVTAL 273
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEML 198
NG EI G+E+ +K + + L Q D + K +YV NL V + L
Sbjct: 274 NGKEIDGKELYCGRAQK-KAEREAELKQKFDEVRQERIAKYQGMNLYVKNLVDEVDDDQL 332
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ F+ G + SAKV++ KS GFGFV +SS E+A A++ +N +L G+ + V
Sbjct: 333 RAEFAPHGTITSAKVMKD-SAGKSKGFGFVCYSSPEEATRAVTEMNGKMLLGKPMYV 388
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V D G S+ + FV + E A IEK+
Sbjct: 125 IFIKNLDKDIDNKALHDTFTAFGTILSCKVATD-LAGNSKGYGFVHYEKEEAAQLAIEKV 183
Query: 144 NGTEIGGREIKVNI----TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG + G+++ V TE+P VD ++ ++ + V+V NL++ +T E ++
Sbjct: 184 NGMLLEGKKVFVGPFLKRTERP---VD------KEQHYTN----VFVKNLSENLTDEEVE 230
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F+E G V S +++ KS GFGF+ F E A AA+++LN ++G+ + +A
Sbjct: 231 KMFNEHGMVTSFAIMKDE-AGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRA 288
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D+D+L HG + A+V+ D G+S+ F FV + E+A + ++
Sbjct: 318 LYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDS-AGKSKGFGFVCYSSPEEATRAVTEM 376
Query: 144 NGTEIGGREIKVNITEK 160
NG + G+ + V + ++
Sbjct: 377 NGKMLLGKPMYVALAQR 393
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232
+YVG+L + VT L + FS+ G V S +V R T +S G+ +V ++S
Sbjct: 26 LYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNS 74
>gi|358342556|dbj|GAA49996.1| RNA-binding protein 39 [Clonorchis sinensis]
Length = 730
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 6/184 (3%)
Query: 76 TPSEF-ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
TP E AR V++ + I +L G + +I D T RS+ A+V + VE
Sbjct: 72 TPEERDARTVFVWQLSARIRQRDLEDFFTSVGKIRDVRLIMDNKTKRSKGIAYVEFREVE 131
Query: 135 DANAVIEKLNGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
A + L GT + G I++ + EK + S+ + N P K+Y+G+L
Sbjct: 132 SAQLAL-GLTGTRLLGVPIQIQQSHAEKNRMNAIPSVPKPTQQN--RGPMKLYIGSLHYN 188
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
+T EMLK F G++ K+++ P T +S G+GFVT+++ +DA+ A+ LN L G+
Sbjct: 189 ITEEMLKGIFEPFGKIDDIKLIKDPATGRSQGYGFVTYANSDDAKKALDQLNGFELAGRP 248
Query: 253 IRVN 256
++VN
Sbjct: 249 MKVN 252
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 12/116 (10%)
Query: 57 TRLFAV--------AEETASSSSSSVDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEH 105
TRL V AE+ ++ SV P++ R ++YIG++ NI + L I +
Sbjct: 142 TRLLGVPIQIQQSHAEKNRMNAIPSVPKPTQQNRGPMKLYIGSLHYNITEEMLKGIFEPF 201
Query: 106 GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEK 160
G ++ ++I D TGRS+ + FV +DA +++LNG E+ GR +KVN +TE+
Sbjct: 202 GKIDDIKLIKDPATGRSQGYGFVTYANSDDAKKALDQLNGFELAGRPMKVNHVTER 257
>gi|301115672|ref|XP_002905565.1| RNA binding protein, putative [Phytophthora infestans T30-4]
gi|262110354|gb|EEY68406.1| RNA binding protein, putative [Phytophthora infestans T30-4]
Length = 322
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 12/176 (6%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S RVY+GN+ +I +L +Q G V+ A V+ ++ GRS+ V T E A
Sbjct: 70 SSVGSRVYVGNLSWSIKGQDLKDHMQAAGPVDLATVL--EWNGRSKGCGIVTYATEEAAQ 127
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
I LN TE+GGR+I V+ D Q + Y+VYVGNL+ V +
Sbjct: 128 NAIATLNDTELGGRKI--------FVREDREA-QPTATTKPKRGYRVYVGNLSWNVKWQE 178
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
LK G V+ A VL + +S G G V +++E++A AI+ LNN+ LEG+ I
Sbjct: 179 LKDHMKTAGTVVHADVLELA-NGRSKGCGLVEYATEDEAAKAIAELNNTELEGRLI 233
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ N+ EL ++ G V A+V+ + GRS+ V T ++A I +
Sbjct: 164 RVYVGNLSWNVKWQELKDHMKTAGTVVHADVL-ELANGRSKGCGLVEYATEDEAAKAIAE 222
Query: 143 LNGTEIGGREIKVNITEKP-LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LN TE+ GR I V +P + +A ++YVGNL + LK
Sbjct: 223 LNNTELEGRLIFVREDREPEGGSISKFAKRASAPRGNGEGRQLYVGNLPWDTNWQQLKDL 282
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
F G V A + P +S GFG + +++ DA AI
Sbjct: 283 FRTVGDVERADIAEYP-DGRSRGFGIIRYTNAVDALQAIG 321
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 18/179 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+P ++ + +L ++ G + K+ V+ D +TG S+ + FV A I+ +
Sbjct: 231 LFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHM 290
Query: 144 NGTEIGGREIKVNITEKP----LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG + GR ++V + P ++D+S K+YV NL + + L
Sbjct: 291 NGRMVEGRMLEVRLAGAPSSGSTKEMDMS--------------KLYVCNLPLLLHEDKLH 336
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F GQV S KV+R T S G+GFV +S + A AI LN L+EG+++ V A
Sbjct: 337 DLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVA 395
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+P + D+L + +G V +V+ D TG S+ + FV + A I +
Sbjct: 320 KLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQ 379
Query: 143 LNGTEIGGREIKV----------NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
LNG I G++++V N + + + + D L + D + VYV NL
Sbjct: 380 LNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMS------NVYVQNLPLL 433
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
+ ++ L F G+V SAKV + S G+GFV FS DA A+ LN L+EG++
Sbjct: 434 MNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRK 493
Query: 253 IRV 255
I V
Sbjct: 494 ILV 496
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 35/217 (16%)
Query: 62 VAEETASSSSSSVDTPSEFARR---------VYIGNIPRNIDNDELTKIVQEHGAVEKAE 112
VA ++S S++SV SE + VY+ N+P ++ D+L + +G V A+
Sbjct: 394 VAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAK 453
Query: 113 VIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-----------TEKP 161
V D +G S+ + FV DA + +LNG + GR+I V + +
Sbjct: 454 VAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILVRVRPPSSPVESHANNRT 513
Query: 162 LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK 221
L ++D+S L YV N+ ++ L + F G++ A V+ S
Sbjct: 514 LKEIDMSNL--------------YVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNS- 558
Query: 222 SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G+GFV F+ A A++ +N +L+EG+ I V A
Sbjct: 559 SKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVA 595
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 27/212 (12%)
Query: 59 LFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKY 118
L A A ++A S S S +Y+G +P + ++L +I +G + +A+
Sbjct: 694 LPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEIVQAKKF---- 749
Query: 119 TGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFV 178
+ + A A I+ L+G +IGG + V + P +++ + F
Sbjct: 750 ---DAGYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPA--------ESDVATFA 798
Query: 179 DSPY------------KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFG 226
+P +YVG L VT++ L + F GQ+ AKV+ T S GFG
Sbjct: 799 RTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFG 858
Query: 227 FVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FV F+ A AI+ +N L+G + V A
Sbjct: 859 FVRFADAYSAATAITHMNGYPLDGHMLAVRTA 890
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+ N+P+ + D+L + G +++ V+Y +Y+ FV+ + A ++
Sbjct: 624 RLYVTNLPQTMSADKLVSLFMPFGQIDRV-VMYAEYS-------FVLYADINSAAKALKH 675
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYKVYVGNLAKTVTSEMLKK 200
++G I G+ + V +E S S V +YVG + VT E L +
Sbjct: 676 MDGYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQ 735
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G+++ AK +G+G + +++ A AAI L+ + G + V A
Sbjct: 736 IFCLYGEIVQAKKF-------DAGYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVA 786
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY--QGVNLYIKNLDDTIDDEK 120
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 121 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 169
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
VY+ N + V E LK+ FS+ G+ LS KV+R P KS GFGFV++ EDA A+ +
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 244 NNSLLEGQRIRVNKA 258
N + G+ I V +A
Sbjct: 63 NGKEISGKIIFVGRA 77
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 107 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 164
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 165 NGRIVGSKPLYVALAQR 181
>gi|426201609|gb|EKV51532.1| hypothetical protein AGABI2DRAFT_189771 [Agaricus bisporus var.
bisporus H97]
Length = 469
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 13/189 (6%)
Query: 73 SVDTPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVM 129
+ P+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV
Sbjct: 5 GMGGPAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVE 64
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
+ A ++ LNG +I EI+VN + ED++ Y V+VG+L
Sbjct: 65 YMDMRSAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTS---GHYHVFVGDL 114
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ V ++L K FS G + A+V+ + KS G+GF+ F + DAE AI+++N L
Sbjct: 115 SPEVNDDVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLG 174
Query: 250 GQRIRVNKA 258
+ IRVN A
Sbjct: 175 SRAIRVNWA 183
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDGNLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMR-DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVMKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D TG+S+ F FV + E+AN +E++
Sbjct: 180 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEM 238
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 239 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 296
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 297 LRKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 345
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 88 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 145
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 146 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 198
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P T KS GFGFV+F E+A A+ +N + G+ + V +A
Sbjct: 199 GKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRA 253
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ ++ GRS+ F FV + E+A + ++
Sbjct: 283 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 340
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 341 NGRIVGSKPLYVALAQR 357
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 26/224 (11%)
Query: 43 SLHNLKTASIEDSTTRLFA-----VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDE 97
S N TA E+ T A +AE + D P R +Y+GN+ ++ D
Sbjct: 2 SFFNPPTAYAEEVCTGYNARMHSKLAEREGFHLGNGSDEP----RTLYVGNLDPSVSEDF 57
Query: 98 LTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157
+ + + G+V K +VI+D G + +AFV A+ ++ +N + RE+KVN
Sbjct: 58 IATLFNQIGSVTKTKVIHD---GANDPYAFVEFSDHGQASQALQTMNKRLLHDREMKVNW 114
Query: 158 TEKPLVQ---VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVL 214
+P Q +D + + V+VG+L+ V ++ L++ F G V AKV+
Sbjct: 115 AVEPGQQPSKIDTTRH-----------FHVFVGDLSSEVDNQKLREAFIPFGDVSDAKVI 163
Query: 215 RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
R T+KS G+GFV++ E+AE AI +N L + IR N A
Sbjct: 164 RDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 207
>gi|213401557|ref|XP_002171551.1| gar2 [Schizosaccharomyces japonicus yFS275]
gi|211999598|gb|EEB05258.1| gar2 [Schizosaccharomyces japonicus yFS275]
Length = 449
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G + N+D++ L K +E+G V A VI D +GRS+ F +V + E A A +
Sbjct: 208 VFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQSGRSKGFGYVDFDSPEAAKAAVAVN 267
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK--VYVGNLAKTVTSEMLK 199
EI GR + ++I+ Q + Q SNF D SP V++GNL+ T + ++
Sbjct: 268 GQKEIDGRMVNLDISTPRPAQNNNGFAQQRASNFGDKQSPPSDTVFIGNLSFNATEDDVR 327
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
FS G++ S ++ + + GFG+VTF S + A+ + +N + G+ R++
Sbjct: 328 NAFSSCGEIQSVRLPTDMNSGRPKGFGYVTFDSIDAAKQCV-EMNGHFIAGRPCRLD 383
>gi|225459201|ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|302142004|emb|CBI19207.3| unnamed protein product [Vitis vinifera]
Length = 294
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 13/199 (6%)
Query: 67 ASSSSSSVDTPS-----EFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
+ S++ +VDTP EF+R R+ NIP ++ + +++G V E+ T
Sbjct: 68 SPSTAVTVDTPQNDEEEEFSRTRLIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNKT- 126
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS 180
R+R AF+ M + E+A A + L E+ GR IKVN P + S +Q + +
Sbjct: 127 RNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYA-NPQKKKPSSPIQHKPV----T 181
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSE-KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
PY +++ NL ++ L++ FS V+SA+V+ +SSG+GFV+F S+E+A+ A
Sbjct: 182 PYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTA 241
Query: 240 ISSLNNSLLEGQRIRVNKA 258
+SS + G+ +RV ++
Sbjct: 242 LSSFQGQMFMGRPLRVARS 260
>gi|297687497|ref|XP_002821249.1| PREDICTED: nucleolysin TIAR isoform 4 [Pongo abelii]
Length = 396
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN-FVDSPYKVYVGNLAKTVTSEMLKK 200
+NG +I G+E+KVN P Q + + N + + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQKKILPVSTPVPNALISDHFHVFVGDLSPEITTEDIKS 126
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 127 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 184
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I +++ G + A V+ D TG+S+ + FV DA I
Sbjct: 109 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 168
Query: 143 LNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L+ ED SP VY G +A +T
Sbjct: 169 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 228
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FS+ E A AI S+N + +EG ++
Sbjct: 229 DQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 282
Query: 255 V 255
Sbjct: 283 C 283
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>gi|126304035|ref|XP_001381740.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Monodelphis domestica]
Length = 409
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +N
Sbjct: 24 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMN 81
Query: 145 GTEIGGREIKVNITEKPLVQVD-------LSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
G +I G+E+KVN P Q +S L+++D + V+VG+L+ +T+E
Sbjct: 82 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTLRSQDH------FHVFVGDLSPEITTED 135
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 136 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 195
Query: 258 A 258
A
Sbjct: 196 A 196
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 15/202 (7%)
Query: 63 AEETASSSSSSVDT-PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 100 SQKKDTSSSTVVSTLRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 159
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP-----LVQVDLSLLQAEDS 175
S+ + FV DA I+++ G +GGR+I+ N T KP + + L +D
Sbjct: 160 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDV 219
Query: 176 NFVDSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
SP VY G + +T +++++ FS GQ++ +V G+ FV F+S
Sbjct: 220 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSH 273
Query: 234 EDAEAAISSLNNSLLEGQRIRV 255
E A AI S+N + +EG ++
Sbjct: 274 ESAAHAIVSVNGTTIEGHVVKC 295
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ-SGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITR--YQVVNLYVKNLDDAIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G V +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDE--NGSKGYGFVHFETREAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGIPLNDRKVFVGRFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPTLSVKVM-TDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPLRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G VLS KV V + S G+GFV F + E AE AI +N L +++ V
Sbjct: 113 KALYDTVSAFGNVLSCKV--VCDENGSKGYGFVHFETREAAERAIEKMNGIPLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDAIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G E++ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVELMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS +++ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVELM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + + D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F + E AE AI +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|147769276|emb|CAN61580.1| hypothetical protein VITISV_008033 [Vitis vinifera]
Length = 294
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 13/199 (6%)
Query: 67 ASSSSSSVDTPS-----EFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
+ S++ +VDTP EF+R R+ NIP ++ + +++G V E+ T
Sbjct: 68 SPSTAVTVDTPQNDEEEEFSRTRLIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNKT- 126
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS 180
R+R AF+ M + E+A A + L E+ GR IKVN P + S +Q + +
Sbjct: 127 RNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYA-NPQKKKPSSPIQHKPV----T 181
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSE-KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
PY +++ NL ++ L++ FS V+SA+V+ +SSG+GFV+F S+E+A+ A
Sbjct: 182 PYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTA 241
Query: 240 ISSLNNSLLEGQRIRVNKA 258
+SS + G+ +RV ++
Sbjct: 242 LSSFQGQMFMGRPLRVARS 260
>gi|409051430|gb|EKM60906.1| hypothetical protein PHACADRAFT_247129 [Phanerochaete carnosa
HHB-10118-sp]
Length = 425
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 76 TPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKT 132
+P+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV
Sbjct: 5 SPAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMD 64
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
+ A ++ LNG +I EI+VN + ED+ Y V+VG+L+
Sbjct: 65 MRAAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTT---GHYHVFVGDLSPE 114
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
V E+L K F+ G + A+V+ + KS G+GF+ F + DAE AI+++N L +
Sbjct: 115 VNDEVLAKAFAAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRA 174
Query: 253 IRVNKA 258
IRVN A
Sbjct: 175 IRVNWA 180
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 20/176 (11%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+P+ I +DEL K ++G + A V+ D+ +G SR F FV ++ E A +EK+
Sbjct: 240 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFESPEAAAVAVEKM 298
Query: 144 NGTEIG------GREIKVNITEKPLV----QVDLSLLQA-EDSNFVDSPYKVYVGNLAKT 192
NG +G GR K + E+ L Q +S + + SN +Y+ NL +
Sbjct: 299 NGISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSN-------LYLKNLDDS 351
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
V E LK+ FSE G V S KV+ + S GFGFV +SS E+A A+S +N ++
Sbjct: 352 VNDEKLKEMFSEYGNVTSCKVM-MNSQGLSRGFGFVAYSSPEEASRALSEMNGKMI 406
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 14/172 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++D +L + + V+ V D T RS +A+V EDA+ ++ L
Sbjct: 60 LYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRD-LTRRSLGYAYVNFANPEDASRAMDSL 118
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I R I++ ++ + + S + V++ NL ++ ++ L + FS
Sbjct: 119 NYAPIRDRPIRIMLSNR------------DPSTRLSGKGNVFIKNLDPSIDNKALYETFS 166
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + +S G+GFV F EE A+AAI LN LL +++ V
Sbjct: 167 AFGTILSCKVA-MDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 217
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 18/219 (8%)
Query: 41 SYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTK 100
S ++ +L A I D R+ + ++ S + V+I N+ +IDN L +
Sbjct: 112 SRAMDSLNYAPIRDRPIRIMLSNRDPSTRLSGKGN--------VFIKNLDPSIDNKALYE 163
Query: 101 IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
G + +V D GRS+ + FV + E A A I+KLNG + +++ V +
Sbjct: 164 TFSAFGTILSCKVAMDA-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR 222
Query: 161 PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLR-VPGT 219
+ D S +S V VYV NL K +T + LKK F + G + SA V++ G
Sbjct: 223 ---RQDRS---RSESGAVPRFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN 276
Query: 220 SKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+S FGFV F S E A A+ +N L + V +A
Sbjct: 277 SRS--FGFVNFESPEAAAVAVEKMNGISLGEDVLYVGRA 313
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++++++L ++ E+G V +V+ + G SR F FV + E+A+ + ++
Sbjct: 343 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSSPEEASRALSEM 401
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + V ++
Sbjct: 402 NGKMIGRKPLYVAFAQR 418
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 17/184 (9%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S+ R +Y+GN+ ++ D + + + G+V K +VI+D G + +AFV A+
Sbjct: 40 SDEPRTLYVGNLDPSVSEDLIATLFNQIGSVTKTKVIFD---GANDPYAFVEFLDHSQAS 96
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQ---VDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
++ +N + RE+KVN +P Q VD + + V+VG+L+ V
Sbjct: 97 QALQTMNKRLLLDREMKVNWAVEPGQQPSKVDTT-----------RHFHVFVGDLSSEVD 145
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
++ L++ F G V AKV+R T+KS G+GFV++ E+AE AI +N L + IR
Sbjct: 146 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 205
Query: 255 VNKA 258
N A
Sbjct: 206 TNWA 209
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
N D P +YVGNL +V+ +++ F++ G V KV+ + + FV F
Sbjct: 37 GNGSDEPRTLYVGNLDPSVSEDLIATLFNQIGSVTKTKVIF---DGANDPYAFVEFLDHS 93
Query: 235 DAEAAISSLNNSLLEGQRIRVNKA 258
A A+ ++N LL + ++VN A
Sbjct: 94 QASQALQTMNKRLLLDREMKVNWA 117
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL+ + T + L++ FSE GQV+ + V+R T +S GFGFVTFSSE++AEAAI+S
Sbjct: 4 KVYVGNLSWSTTDDTLREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAINS 63
Query: 243 LNNSLLEGQRIRVNKA 258
L+ L+G+RI+VN A
Sbjct: 64 LHEQDLDGRRIKVNLA 79
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ + +D L + E+G V + V+ D+ TGRSR F FV + ++A A I
Sbjct: 4 KVYVGNLSWSTTDDTLREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAINS 63
Query: 143 LNGTEIGGREIKVNI 157
L+ ++ GR IKVN+
Sbjct: 64 LHEQDLDGRRIKVNL 78
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YIGN+ +D+D L ++ + G V V DK TG + + FV + DA+ ++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKLM 90
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ +++N + A+D D V++GNL V + + FS
Sbjct: 91 NMVKLYGKALRLNKS-------------AQDRRNFDVGANVFLGNLDPDVDEKTIYDTFS 137
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G ++SAK++R P T S GFGFV+F + E ++AA++++N + + I V+ A
Sbjct: 138 AFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++GN+ ++D + G + A+++ D TG SR F FV T E ++A + +
Sbjct: 118 VFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAM 177
Query: 144 NGTEIGGREIKVNITEK 160
NG I R I V+ K
Sbjct: 178 NGQFICNRPIHVSYAYK 194
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YIGN+ +D+D L ++ + G V V DK TG + + FV + DA+ ++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKLM 90
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ +++N + A+D D V++GNL V + + FS
Sbjct: 91 NMVKLYGKALRLNKS-------------AQDRRNFDVGANVFLGNLDPDVDEKTIYDTFS 137
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G ++SAK++R P T S GFGFV+F + E ++AA++++N + + I V+ A
Sbjct: 138 AFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++GN+ ++D + G + A+++ D TG SR F FV T E ++A + +
Sbjct: 118 VFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAM 177
Query: 144 NGTEIGGREIKVNITEK 160
NG I R I V+ K
Sbjct: 178 NGQFICNRPIHVSYAYK 194
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YIGN+ +D+D L ++ + G V V DK TG + + FV + DA+ ++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKLM 90
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ +++N + A+D D V++GNL V + + FS
Sbjct: 91 NMVKLYGKALRLNKS-------------AQDRRNFDVGANVFLGNLDPDVDEKTIYDTFS 137
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G ++SAK++R P T S GFGFV+F + E ++AA++++N + + I V+ A
Sbjct: 138 AFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++GN+ ++D + G + A+++ D TG SR F FV T E ++A + +
Sbjct: 118 VFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAM 177
Query: 144 NGTEIGGREIKVNITEK 160
NG I R I V+ K
Sbjct: 178 NGQFICNRPIHVSYAYK 194
>gi|50409715|ref|XP_456900.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
gi|49652564|emb|CAG84877.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
Length = 447
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L + + G V A VI ++ TG+SR + +V + A +++
Sbjct: 200 LFVGRLSWSIDDEWLRREFEPVGGVISARVIMERSTGKSRGYGYVDFDSKSAAEKALQEY 259
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEMLKKC 201
G E+ GR I +++ T KP + + + +P ++VGNL+ + L
Sbjct: 260 QGKELDGRPINLDMSTGKPHASNPNTDRAKQFGDVPSAPSDTLFVGNLSFNAERDSLFNT 319
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F E G V+S ++ P T + GFG+V FSS ++A+AA+ +LN L+G+ R++
Sbjct: 320 FGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYLDGRACRLD 374
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D PS + +++GN+ N + D L E+G V + T + + F +V +V+
Sbjct: 293 DVPSAPSDTLFVGNLSFNAERDSLFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVD 352
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A A +E LNG + GR +++ +
Sbjct: 353 EAKAALEALNGEYLDGRACRLDFS 376
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S+ R +Y+GN+ + D + + + G+V K +VI+D G + +AFV A+
Sbjct: 42 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQAS 98
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQ---VDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
++ +N + RE+KVN +P Q +D + + V+VG+L+ V
Sbjct: 99 QALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRH-----------FHVFVGDLSSEVD 147
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
++ L++ F G V AKV+R T+KS G+GFV++ E+AE AI +N L + IR
Sbjct: 148 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 207
Query: 255 VNKA 258
N A
Sbjct: 208 TNWA 211
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
N D P +YVGNL TVT + + F++ G V KV+ G++ + FV FS
Sbjct: 39 GNGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI-FDGSNDP--YAFVEFSDHG 95
Query: 235 DAEAAISSLNNSLLEGQRIRVNKA 258
A A+ ++N LL + ++VN A
Sbjct: 96 QASQALQTMNKRLLLDREMKVNWA 119
>gi|395742091|ref|XP_003777693.1| PREDICTED: nucleolysin TIAR [Pongo abelii]
Length = 386
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN-FVDSPYKVYVGNLAKTVTSEMLKK 200
+NG +I G+E+KVN P Q + + N + + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQKKILPVSTPVPNALISDHFHVFVGDLSPEITTEDIKS 126
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 127 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 184
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I +++ G + A V+ D TG+S+ + FV DA I
Sbjct: 109 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 168
Query: 143 LNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L+ ED SP VY G +A +T
Sbjct: 169 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 228
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FS+ E A AI S+N + +EG ++
Sbjct: 229 DQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 282
Query: 255 V 255
Sbjct: 283 C 283
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 97/172 (56%), Gaps = 5/172 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P ++ + +L ++ G + ++ V+ D +TG S+ + FV A+ I+++
Sbjct: 295 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 354
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + G +KV +T P + D S +++++ K+YV NL+ ++ ++ L F
Sbjct: 355 NGRLVEGTALKVRVTGFPSSE-DNSQQPSKETDMA----KLYVCNLSLSMNTDRLIHLFL 409
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G+V +AKV + T S G+GFV +SS A A+ LN L++G++I V
Sbjct: 410 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEV 461
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ +++ D L + G V A+V D TG S+ + FV + A +
Sbjct: 389 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 448
Query: 143 LNGTEIGGREIKVNITEKP--LVQVDLSLLQAEDSNFVDSPY-----------KVYVGNL 189
LNG + GR+I+V ++ P L + ++ V+SP +YV N+
Sbjct: 449 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 508
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
++ ++ L + F G++ A+V+ P T + G+GF+ F+ E A AI+++N +L+
Sbjct: 509 PSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVG 568
Query: 250 GQRIRVNKA 258
G+ I V A
Sbjct: 569 GEMIIVRVA 577
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G +P ++ D+ + + G V +A + R +R+ V A A I+ L
Sbjct: 688 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAAIDHL 741
Query: 144 NGTEIGGREIKVNITEKPLVQ-----VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+G +IGG + V + P S + + + +D +YV +L V +E L
Sbjct: 742 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM-TNLYVSHLPSYVNNERL 800
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
F GQ+ AKV+ T S GFGFV F+ A A++ +N L+G + V
Sbjct: 801 IDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEV 857
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 40/209 (19%)
Query: 62 VAEETASSSSSSVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
VA + S+S S+V T + + R+YI N+PR++ D++ + G + K +
Sbjct: 576 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLM------- 628
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE-----------KPLVQVDLSL 169
+ ++ V A ++ ++G + G+ + V +E KP+ ++D++
Sbjct: 629 -NLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMAN 687
Query: 170 LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
L YVG + ++T + F G+V+ A++ R +G V
Sbjct: 688 L--------------YVGRVPSSLTEDQFIDLFRPFGRVVQARMFRF------QRYGMVR 727
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + A AAI L+ + G + V A
Sbjct: 728 FDNPSCAAAAIDHLDGYQIGGSILAVRVA 756
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ ++P ++N+ L + G + +A+V+ ++YTG S+ F FV A + +
Sbjct: 786 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 845
Query: 144 NGTEIGGREIKVNI 157
NG + G ++V I
Sbjct: 846 NGYPLDGHVLEVRI 859
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDS-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS ++A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPDEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ + KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 212 SKYGKTLSVKVM-TDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + ++A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPDEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|254572962|ref|XP_002493590.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|238033389|emb|CAY71411.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|328354581|emb|CCA40978.1| Nuclear localization sequence-binding protein [Komagataella
pastoris CBS 7435]
Length = 362
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 3/176 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A V+ ++ TGRSR + +V A +E++
Sbjct: 128 LFVGRLSWSIDDEWLKKEFEHIGGVVGARVMMERATGRSRGYGYVDFDNKASAEKALEEM 187
Query: 144 NGTEIGGREIKVNITE-KPLVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKK 200
G EI GR I V+++ KP + +A SP +++GNL+ + L +
Sbjct: 188 QGKEIDGRPINVDMSNSKPAAPAARNNDRASQYGDKRSPPSDTLFLGNLSFQADRDTLFE 247
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
FS+ G V S ++ P T + GFG+V FSS ++A A+ +LN ++ + IR++
Sbjct: 248 LFSKHGNVTSVRIPTHPETEQPKGFGYVQFSSVDEATGALEALNGEYVDNRPIRLD 303
>gi|409083337|gb|EKM83694.1| hypothetical protein AGABI1DRAFT_110331 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 444
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 13/189 (6%)
Query: 73 SVDTPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVM 129
+ P+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV
Sbjct: 5 GMGGPAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVE 64
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
+ A ++ LNG +I EI+VN + ED++ Y V+VG+L
Sbjct: 65 YMDMRSAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTS---GHYHVFVGDL 114
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ V ++L K FS G + A+V+ + KS G+GF+ F + DAE AI+++N L
Sbjct: 115 SPEVNDDVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLG 174
Query: 250 GQRIRVNKA 258
+ IRVN A
Sbjct: 175 SRAIRVNWA 183
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 IQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|449302198|gb|EMC98207.1| hypothetical protein BAUCODRAFT_416441 [Baudoinia compniacensis
UAMH 10762]
Length = 479
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 22/206 (10%)
Query: 66 TASSSSSSVDTP---SEFARR---------VYIGNIPRNIDNDELTKIVQEHGAVEKAEV 113
+AS+ S+ + +P S FARR +Y+G + + D L +I + G V+ ++
Sbjct: 54 SASAPSAGILSPGSASSFARRAAPEPNKRALYVGGLDPRVTEDVLKQIFETTGHVQSVKI 113
Query: 114 IYDK-YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQA 172
I DK + + + FV + A ++ LNG + +EI+VN + ++ +
Sbjct: 114 IPDKNFQSKGYNYGFVEYDDPQCAERAMQTLNGRRVHQQEIRVNWAYQ-----SNTISKE 168
Query: 173 EDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232
+ SN + ++VG+L+ V E+L + FS G V A+V+ T +S G+GFV+F
Sbjct: 169 DTSNH----FHIFVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVSFRD 224
Query: 233 EEDAEAAISSLNNSLLEGQRIRVNKA 258
DAE A+SS++ L + IR N A
Sbjct: 225 RGDAEKALSSMDGEWLGSRAIRCNWA 250
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 79 EFARRVYIGNI-PRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
++ Y+GN+ P ND L + Q G V + D R FAFV M T E+A
Sbjct: 297 QWQTTCYVGNLTPYTTQND-LVPLFQNFGYVTETRFHSD------RGFAFVKMDTHENAA 349
Query: 138 AVIEKLNGTEIGGREIKVNITE--KPLVQVDLSLLQAEDSNFVDSP 181
I +L+G + GR +K + + P Q D S F +P
Sbjct: 350 NAICQLSGYNVNGRPLKCSWGKDRPPTGQFDGYSPAPPQSAFPPTP 395
>gi|291386623|ref|XP_002709696.1| PREDICTED: TIA1 cytotoxic granule-associated RNA binding
protein-like [Oryctolagus cuniculus]
Length = 386
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 12/174 (6%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +N
Sbjct: 21 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 78
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+
Sbjct: 79 GRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKAAFAP 128
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 129 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 94 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 151
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 152 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSP 211
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 212 SNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHE 260
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 261 SAAHAIVSVNGTTIEGHVVKC 281
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + + D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F + E AE AI +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 10/181 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +++ D + G + A ++ D + G+SR F FV ++ EDA ++ L
Sbjct: 201 LYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQD-HNGKSRGFGFVDFESPEDAKKAVDAL 259
Query: 144 NGTEIGGREIKVNITE-----KPLVQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG ++ R + V + K ++Q + + F S +YV NLA + ++
Sbjct: 260 NGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKAS--NLYVKNLALCIDNDK 317
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L++ FS G+++SAKV+R S GFGFV FSS E+A+ A+++LN ++ +G+ + V
Sbjct: 318 LQELFSCSGKIVSAKVMRY-DNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAM 376
Query: 258 A 258
A
Sbjct: 377 A 377
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + L + G + + TGRS + +V DA + L
Sbjct: 21 LYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSNL 80
Query: 144 NGTEIGGREIKVNITEK-PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
N T + G+ +++ ++ P A S + +YV NL ++ S L+ F
Sbjct: 81 NHTYLKGKLMRIMWCQRNPC---------ARKSGIGN----LYVKNLDASIDSAGLQSLF 127
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
S+ G +LS KV+ G KS G+GFV F SE+ A AA ++L++++L+ +++ V++
Sbjct: 128 SKFGTILSCKVVEEHG--KSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSR 180
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID+ L + + G + +V+ + G+S+ + FV + + A A L
Sbjct: 109 LYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEH--GKSKGYGFVQFDSEDSALAARTAL 166
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+ T + +++ V+ +K S + + +N +YV NL+K +T + F
Sbjct: 167 HDTMLKEKKLYVSRFVKKSERTTATSYDELKFTN-------LYVKNLSKDMTQDAFHNMF 219
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G+++SA +++ KS GFGFV F S EDA+ A+ +LN LE + + V +A
Sbjct: 220 SAFGEIISAVIMQ-DHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRA 274
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI-YDKYTGRSRRFAFVMMKTVEDANAV 139
A +Y+ N+ IDND+L ++ G + A+V+ YD G SR F FV + E+A
Sbjct: 301 ASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVMRYD--NGASRGFGFVCFSSPEEAKKA 358
Query: 140 IEKLNGTEIGGREIKVNITE 159
+ LNG G+ + V + +
Sbjct: 359 LNALNGAVFQGKSLYVAMAQ 378
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + + D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F + E AE AI +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|226467496|emb|CAX69624.1| Poly U-binding-splicing factor half pint [Schistosoma japonicum]
Length = 411
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I I +E+ K G ++ + +D + + FAFV + E A+ +E+
Sbjct: 94 RIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLALEQ 153
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+NG + GR +KV +P + L+AE + +VY+ ++ +T ++ F
Sbjct: 154 MNGYTLAGRNLKVG---RPSNAPQTAALEAELRAESSTKPRVYIASVHPELTESDIQTVF 210
Query: 203 SEKGQVLSAKVL---RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G+V S + + PG + GFG++ F SEE A AA+SS+N L GQ++RV +A
Sbjct: 211 EAFGKVNSCSLYPDPKCPG--RHRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRA 267
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDDIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPLRIMWSQR-----DPSLRKSGMGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F + E AE AI +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|255939157|ref|XP_002560348.1| Pc15g01230 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584970|emb|CAP83009.1| Pc15g01230 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 507
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 4/194 (2%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A+ S + D P + ++IGN+ N+D + L + E G + ++ D+ +GRSR F
Sbjct: 237 AAKKSKTEDAPEGASANLFIGNLSWNVDEEWLQREFSEFGELSGVRIVTDRESGRSRGFG 296
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK- 183
+V + DA +E GT++ GR I ++ Q ++ D SP
Sbjct: 297 YVEYTSAADAAKAMEAKKGTDLDGRTINLDYAAPRQANPQQDRTQDRARSYGDQTSPESD 356
Query: 184 -VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
++VGNL + T + L + F G VL ++ T + GFG+V FSS ++A+AA +
Sbjct: 357 TLFVGNLPFSATEDALHEVFGAHGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHGA 416
Query: 243 LNNSLLEGQRIRVN 256
LN LEG+ +R++
Sbjct: 417 LNGHELEGRAVRLD 430
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+P + D L ++ HG+V + ++ TGR + F +V ++++A A L
Sbjct: 358 LFVGNLPFSATEDALHEVFGAHGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHGAL 417
Query: 144 NGTEIGGREIKVNI-TEKP 161
NG E+ GR ++++ T +P
Sbjct: 418 NGHELEGRAVRLDFSTPRP 436
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+++GNL+ V E L++ FSE G++ +++ + +S GFG+V ++S DA A+ +
Sbjct: 254 LFIGNLSWNVDEEWLQREFSEFGELSGVRIVTDRESGRSRGFGYVEYTSAADAAKAMEAK 313
Query: 244 NNSLLEGQRIRVNKA 258
+ L+G+ I ++ A
Sbjct: 314 KGTDLDGRTINLDYA 328
>gi|126273923|ref|XP_001387749.1| nuclear localization sequence binding protein [Scheffersomyces
stipitis CBS 6054]
gi|126213619|gb|EAZ63726.1| nuclear localization sequence binding protein, partial
[Scheffersomyces stipitis CBS 6054]
Length = 245
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 8/178 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + NID++ L + + G V A VI ++ TG+SR + +V + A + +
Sbjct: 5 LFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKALNEY 64
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G E+ GR I +++ T KP V + + D+P +++GNL+ + L
Sbjct: 65 QGRELDGRPINLDMSTGKPHV---TKSTENRAKQYGDTPSAPSDTLFIGNLSFNADRDNL 121
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F G V+S ++ P T + GFG+V FSS ++A+AA+ +LN +EG+ R++
Sbjct: 122 FNIFGVHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEALNGEYIEGRACRLD 179
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEV 113
D +T V + T + + DTPS + ++IGN+ N D D L I HG V +
Sbjct: 77 DMSTGKPHVTKSTENRAKQYGDTPSAPSDTLFIGNLSFNADRDNLFNIFGVHGTVISCRI 136
Query: 114 IYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158
T + + F +V +V++A A +E LNG I GR +++ +
Sbjct: 137 PTHPDTQQPKGFGYVQFSSVDEAKAAMEALNGEYIEGRACRLDFS 181
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ + E L++ F G V+SA+V+ T KS G+G+V F S+ AE A+
Sbjct: 2 PATLFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKAL 61
Query: 241 SSLNNSLLEGQRIRVN 256
+ L+G+ I ++
Sbjct: 62 NEYQGRELDGRPINLD 77
>gi|449540824|gb|EMD31812.1| hypothetical protein CERSUDRAFT_88684 [Ceriporiopsis subvermispora
B]
Length = 292
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 2/191 (1%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +++ + S+ + +++G + N+DND L + E G V A V D+ TG+SR F
Sbjct: 29 ADGNAAPAEEASDATKTIFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFG 88
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNIT-EKPLVQVDLSLLQAEDSNFVDSPYKVY 185
+V TVE +A I + NG EI GR + ++ + EK V +A + ++
Sbjct: 89 YVTFATVEAVDAAIAQ-NGKEIDGRAVNIDKSIEKDKGAVRQKRAEAYGDKASEPSSVLF 147
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
VGNL+ T + L + F+E G + S +V T K GF +V FS E ++ A
Sbjct: 148 VGNLSWDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIEASKKAFEGAAG 207
Query: 246 SLLEGQRIRVN 256
+ + G+ IRV+
Sbjct: 208 AEVAGRNIRVD 218
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 165 VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG 224
D + AE+++ D+ ++VG L+ V ++ L + F+E G+V+SA+V T KS G
Sbjct: 29 ADGNAAPAEEAS--DATKTIFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRG 86
Query: 225 FGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
FG+VTF++ E +AAI+ N ++G+ + ++K
Sbjct: 87 FGYVTFATVEAVDAAIAQ-NGKEIDGRAVNIDK 118
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D SE + +++GN+ + D L + E+G ++ V D+ TG+ + FA+V +E
Sbjct: 137 DKASEPSSVLFVGNLSWDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIE 196
Query: 135 DANAVIEKLNGTEIGGREIKVNITE 159
+ E G E+ GR I+V+ ++
Sbjct: 197 ASKKAFEGAAGAEVAGRNIRVDFSQ 221
>gi|443924183|gb|ELU43247.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 498
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 17/193 (8%)
Query: 69 SSSSSVDTPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRF 125
S+ SS + P RR +Y+GN+ + LT+I G V+ ++I D+ Y + +
Sbjct: 35 STCSSAEAP----RRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGQNY 90
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVY 185
FV + A ++ LNG +I EI+VN + ED++ + Y V+
Sbjct: 91 GFVEYMDMRAAETALQTLNGRKIFDTEIRVNWAYQ-------GTQNKEDTS---NHYHVF 140
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
VG+L+ V E+L K F+ G + A+V+ + KS G+GF+ F + DAE AI+++N
Sbjct: 141 VGDLSPEVNDEVLAKAFAAFGSLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNG 200
Query: 246 SLLEGQRIRVNKA 258
L + IRVN A
Sbjct: 201 EWLGSRAIRVNWA 213
>gi|405117835|gb|AFR92610.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
grubii H99]
Length = 444
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 98/177 (55%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G + N+DND L + G V A V++D+ + +SR F +V + + IEK
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLGSSAKAIEK- 256
Query: 144 NGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLK 199
+G+EI GR I+VN KP + + +A N SP +++G+L+ +VT + +
Sbjct: 257 DGSEIDGRAIRVNYATQRKPN---EAAEKRARVFNDKQSPPAETLWIGSLSFSVTEDQVY 313
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F + G V S ++ T GFG+V FSS +DA AA+ ++N + + G+ IRV+
Sbjct: 314 EAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDATAALKAMNGAEIAGRAIRVD 370
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D S A ++IG++ ++ D++ + +HG V+ + D+ TG + F +V +V+
Sbjct: 289 DKQSPPAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVD 348
Query: 135 DANAVIEKLNGTEIGGREIKVNI 157
DA A ++ +NG EI GR I+V+
Sbjct: 349 DATAALKAMNGAEIAGRAIRVDF 371
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S+ R +Y+GN+ + D + + + G+V K +VI+D G + +AFV A+
Sbjct: 38 SDEPRTLYVGNLDPTVSEDFVATLFNQIGSVTKTKVIFD---GANDPYAFVEFSDHAQAS 94
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQ---VDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
++ +N + RE+KVN +P Q +D + + V+VG+L+ V
Sbjct: 95 QALQTMNKRLLLDREMKVNWAVEPGQQPSKIDTT-----------RHFHVFVGDLSSEVD 143
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
++ L++ F G V AKV+R T+KS G+GFV++ E+AE AI +N L + IR
Sbjct: 144 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 203
Query: 255 VNKA 258
N A
Sbjct: 204 TNWA 207
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
N D P +YVGNL TV+ + + F++ G V KV+ + + FV FS
Sbjct: 35 GNGSDEPRTLYVGNLDPTVSEDFVATLFNQIGSVTKTKVIF---DGANDPYAFVEFSDHA 91
Query: 235 DAEAAISSLNNSLLEGQRIRVNKA 258
A A+ ++N LL + ++VN A
Sbjct: 92 QASQALQTMNKRLLLDREMKVNWA 115
>gi|242076980|ref|XP_002448426.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
gi|241939609|gb|EES12754.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
Length = 278
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 12/174 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R++Y+ N+P + E+ K+ +HG V+ EVI K GR+R FAFV M T E+A A E
Sbjct: 75 RKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGK-DGRNRGFAFVTMSTTEEAAAAAE 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
KLN ++ GR IKV + S + + +K+YV NL + +K+
Sbjct: 134 KLNSHDVMGRTIKVEFSR--------SFRKPAPLPPIIERHKLYVSNLPWKARAPNVKEF 185
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+ K LSA V+ G K++G+ FV+F ++E+AEAA++ L+ L G+ +R+
Sbjct: 186 FA-KFNPLSANVIFDNG--KAAGYCFVSFGTKEEAEAALTELDGKELMGRPVRL 236
>gi|349580919|dbj|GAA26078.1| K7_Pub1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 453
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ S+ L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 182
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
>gi|409079870|gb|EKM80231.1| hypothetical protein AGABI1DRAFT_73218 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 568
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 9/200 (4%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
AV EE + +D + +++G + ++DND L + E G V A V D+ TG
Sbjct: 287 AVDEEQPEAKKVKLDPATPETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTG 346
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVD 179
RSR F +V T + + K+NG EI GR IKV+++ P Q+ + +
Sbjct: 347 RSRGFGYVHFSTADAVEKAL-KMNGYEIDGRAIKVDLSTPPNSNQIRERRAKVFNDEISP 405
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG---TSKSSGFGFVTFSSEEDA 236
+++GNL ++T + L F S K +R+P T + GFG+V + EDA
Sbjct: 406 PSSTLFIGNLPFSITEDGLWSYFDGH----SVKTIRLPTDRETGQLKGFGYVELENVEDA 461
Query: 237 EAAISSLNNSLLEGQRIRVN 256
+ A +++ +EG+R+RV+
Sbjct: 462 KKAFEAISGQEIEGRRVRVD 481
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+P +I D L H +V+ + D+ TG+ + F +V ++ VEDA E +
Sbjct: 410 LFIGNLPFSITEDGLWSYFDGH-SVKTIRLPTDRETGQLKGFGYVELENVEDAKKAFEAI 468
Query: 144 NGTEIGGREIKVNITE 159
+G EI GR ++V+ ++
Sbjct: 469 SGQEIEGRRVRVDYSQ 484
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+D L +I G +V+ D GRS+ F FV + E+A + +
Sbjct: 193 VYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDN-NGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG EI GR + V +K L ++ ++ E N +YV NL + E L
Sbjct: 252 NGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQG-VNLYVKNLDDGIDDERL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPYGTITSAKVMTEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D+ SR + FV +T E A IE +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHEAATRAIETM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + ++ E +N VY+ N + + L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTN-------VYIKNFGDDMDDDRLREIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G+ LS KV+ + +S GFGFV F E+A+ A++ +N + G+ + V +A
Sbjct: 212 SRFGKTLSVKVM-MDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRA 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G ++S +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFEVIKGRPIRI 84
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K +G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 97/172 (56%), Gaps = 5/172 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P ++ + +L ++ G + ++ V+ D +TG S+ + FV A+ I+++
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + G +KV +T P + D S +++++ K+YV NL+ ++ ++ L F
Sbjct: 271 NGRLVEGTALKVRVTGFPSSE-DNSQQPSKETDMA----KLYVCNLSLSMNTDRLIHLFL 325
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G+V +AKV + T S G+GFV +SS A A+ LN L++G++I V
Sbjct: 326 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEV 377
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ +++ D L + G V A+V D TG S+ + FV + A +
Sbjct: 305 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 364
Query: 143 LNGTEIGGREIKVNITEKP--LVQVDLSLLQAEDSNFVDSPY-----------KVYVGNL 189
LNG + GR+I+V ++ P L + ++ V+SP +YV N+
Sbjct: 365 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 424
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
++ ++ L + F G++ A+V+ P T + G+GF+ F+ E A AI+++N +L+
Sbjct: 425 PSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVG 484
Query: 250 GQRIRVNKA 258
G+ I V A
Sbjct: 485 GEMIIVRVA 493
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 12/180 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G +P ++ D+ + + G V +A + R +R+ V A A I+ L
Sbjct: 604 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAAIDHL 657
Query: 144 NGTEIGGREIKVNITEKPLVQ-----VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+G +IGG + V + P S + + + +D +YV +L V +E L
Sbjct: 658 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM-TNLYVSHLPSYVNNERL 716
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F GQ+ AKV+ T S GFGFV F+ A A++ +N L+G + V A
Sbjct: 717 IDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIA 776
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 40/209 (19%)
Query: 62 VAEETASSSSSSVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
VA + S+S S+V T + + R+YI N+PR++ D++ + G + K +
Sbjct: 492 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLM------- 544
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE-----------KPLVQVDLSL 169
+ ++ V A ++ ++G + G+ + V +E KP+ ++D++
Sbjct: 545 -NLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMAN 603
Query: 170 LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
L YVG + ++T + F G+V+ A++ R +G V
Sbjct: 604 L--------------YVGRVPSSLTEDQFIDLFRPFGRVVQARMFRF------QRYGMVR 643
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + A AAI L+ + G + V A
Sbjct: 644 FDNPSCAAAAIDHLDGYQIGGSILAVRVA 672
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+V YV NL + E L+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + + D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F + E AE AI +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 268
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 269 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 326
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L++ FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 327 LRREFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 375
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 175
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V LK+ F
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDGNLKELF 228
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 229 SQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 283
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 90 NFDVMKGKPIRI 101
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L + G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 313 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 370
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 371 NGRIVGSKPLYVALAQR 387
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L +I G +V+ D +TGRS+ F FV + E+A + +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI GR + V +K L Q +L + Q S + +YV NL + E
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D+ SR FV +T E A I+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + + E +N VY+ N + L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTN-------VYIKNFGDDMDDNRLREIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G+ LS KV+ + T +S GFGFV F E+A+ A++ +N + G+ + V +A
Sbjct: 212 SRFGKTLSVKVM-MDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRA 266
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R + +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFEVIKGRPVRI 84
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>gi|172438|gb|AAA02808.1| RNA-binding protein [Saccharomyces cerevisiae]
Length = 429
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ S+ L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 182
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + + D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F + E AE AI +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|323335711|gb|EGA76992.1| Pub1p [Saccharomyces cerevisiae Vin13]
Length = 453
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ S+ L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 182
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ ++ D + E G V ++ D G+SR F FV ++ ++A +E L
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF---VDSPYKVYVGNLAKTVTSEMLKK 200
NG +G +++ V +K + +L + E N + +YV NL +V + L++
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS GQ+ SAKV+R + S GFGFV FS+ E+A+ A+++LN +LL G+ + + A
Sbjct: 328 HFSSCGQITSAKVMR-HDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMA 384
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 98/175 (56%), Gaps = 11/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ +I++ L I + G + +V + G+S+ F FV + + A A + L
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--NGKSKCFGFVQFDSDDSATAALNAL 176
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + G+++ V+ K + + S E++ F + VYV NL + +T ++++ FS
Sbjct: 177 NDTMLDGKKLFVSKFVKKCERKEAS----EETKFTN----VYVKNLGEDLTEDIIRDKFS 228
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G+V + +++ G KS GFGFV F S ++A+ A+ +LN ++L +++ V +A
Sbjct: 229 EFGKVGTVVIMK-DGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRA 282
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + EL + G + + D +G+S +A+V DA+ + L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALACL 90
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T++ G+ +++ + + + L ++V NL ++ S L+ F
Sbjct: 91 NHTKLMGKPMRIMWSHRDPLPRKTGLAN------------LFVKNLDPSINSASLQDIFC 138
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+ G +LS KV G SK FGFV F S++ A AA+++LN+++L+G+++ V+K
Sbjct: 139 KFGNILSCKVAEENGKSKC--FGFVQFDSDDSATAALNALNDTMLDGKKLFVSK 190
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI-YDKYTGRSRRFAFVMMKTVEDAN 137
E A +Y+ N+ ++D+D+L + G + A+V+ +D +G S+ F FV T E+A
Sbjct: 306 EKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHD--SGLSKGFGFVCFSTSEEAQ 363
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK 183
+ LNGT + GR + + + ++ + + + QA+ N + Y+
Sbjct: 364 KALTTLNGTLLHGRSLYIAMAQRKEDRQRIPMKQAQQGNTNNWGYQ 409
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+D+L I ++G V+ D+ G+SR F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSL---LQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG E+ G+ I V +K + Q +L +D +YV NL + E L+
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KEFSPFGTITSAKVMMDGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + + LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDDKLKDIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G +S +V+ KS GFGFV+F EDA+ A+ +N + G+ I V +A
Sbjct: 212 SKYGNAMSIRVM-TDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRA 266
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ +++ L + GA+ V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I GR +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGRPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ D GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 122 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 181 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 238
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L++ FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 239 LRREFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 287
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 30 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 87
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V LK+ F
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDGNLKELF 140
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 141 SQFGKTLSVKVMR-DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 195
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L + G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 225 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 282
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 283 NGRIVGSKPLYVALAQR 299
>gi|367000405|ref|XP_003684938.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
gi|357523235|emb|CCE62504.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
Length = 442
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+ ++I+ + L + Q G + +VI DK S +AFV DA+ + L
Sbjct: 81 LYVGNLDKSINEETLKQYFQIGGPISNVKVINDK--NNSVNYAFVEYLQHHDADVAFKNL 138
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG I + +K+N Q++ + +S + ++VG+L V E L FS
Sbjct: 139 NGKTIETKVLKINWA-----------FQSQQTTSDESLFNLFVGDLNVDVDDETLGHAFS 187
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E + A V+ T +S G+GF++FS++EDA+ A+ + ++ L G++IR+N A
Sbjct: 188 EFPSFVQAHVMWDMQTGRSRGYGFISFSNQEDAQTAMDKMQSTELNGRQIRINWA 242
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+ NL +IE ++ + ++S S+ +++G++ ++D++ L
Sbjct: 134 AFKNLNGKTIETKVLKINWAFQSQQTTSDESL-------FNLFVGDLNVDVDDETLGHAF 186
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
E + +A V++D TGRSR + F+ EDA ++K+ TE+ GR+I++N K
Sbjct: 187 SEFPSFVQAHVMWDMQTGRSRGYGFISFSNQEDAQTAMDKMQSTELNGRQIRINWASK 244
>gi|366990603|ref|XP_003675069.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
gi|342300933|emb|CCC68698.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
Length = 443
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPS------EFARRV-YIGNIPRNIDNDELTKIVQEHG 106
D + A E++A + SSV S E + RV Y+GN+ ++I+ D L + Q G
Sbjct: 48 DPVSEAPAAGEQSAENQESSVVPASATQGGRETSDRVLYVGNLDKSINEDLLKQYFQVGG 107
Query: 107 AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVD 166
+ +++ DK + +AF+ DAN ++ LNG +I G+ +++N
Sbjct: 108 QITDVKIMVDK-KNNNVNYAFIEYLKSHDANVALQTLNGIQIEGKTVRINWA-------- 158
Query: 167 LSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFG 226
Q++ + D + ++VG+L V E L F + + A V+ T +S G+G
Sbjct: 159 ---FQSQQTTNSDDTFNLFVGDLNVDVDDETLSHAFDQFPSYVQAHVMWDMQTGRSRGYG 215
Query: 227 FVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FV+F+ +E A+ A++ + + G+ +R+N A
Sbjct: 216 FVSFADQEQAQEAMNVMQGMPINGRAVRINWA 247
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 43 SLHNLKTASIEDSTTRL-FAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKI 101
+L L IE T R+ +A + ++S + + +++G++ ++D++ L+
Sbjct: 139 ALQTLNGIQIEGKTVRINWAFQSQQTTNSDDTFN--------LFVGDLNVDVDDETLSHA 190
Query: 102 VQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
+ + +A V++D TGRSR + FV E A + + G I GR +++N K
Sbjct: 191 FDQFPSYVQAHVMWDMQTGRSRGYGFVSFADQEQAQEAMNVMQGMPINGRAVRINWATK 249
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ ++ D + E G V ++ D G+SR F FV ++ ++A +E L
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF---VDSPYKVYVGNLAKTVTSEMLKK 200
NG +G +++ V +K + +L + E N + +YV NL +V + L++
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS GQ+ SAKV+R + S GFGFV FS+ E+A+ A+++LN +LL G+ + + A
Sbjct: 328 HFSSCGQITSAKVMRH-DSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMA 384
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 98/175 (56%), Gaps = 11/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ +I++ L I + G + +V + G+S+ F FV + + A A + L
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--NGKSKCFGFVQFDSDDSATAALNAL 176
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + G+++ V+ K + + S E++ F + VYV NL + +T ++++ FS
Sbjct: 177 NDTMLDGKKLFVSKFVKKCERKEAS----EETKFTN----VYVKNLGEDLTEDIIRDKFS 228
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G+V + +++ G KS GFGFV F S ++A+ A+ +LN ++L +++ V +A
Sbjct: 229 EFGKVGTVVIMK-DGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRA 282
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + EL + G + + D +G+S +A+V DA+ + L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T++ G+ +++ + + + L ++V NL ++ S L+ F
Sbjct: 91 NHTKLMGKPMRIMWSHRDPLPRKTGLAN------------LFVKNLDPSINSASLQDIFC 138
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+ G +LS KV G SK FGFV F S++ A AA+++LN+++L+G+++ V+K
Sbjct: 139 KFGNILSCKVAEENGKSKC--FGFVQFDSDDSATAALNALNDTMLDGKKLFVSK 190
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A +Y+ N+ ++D+D+L + G + A+V+ +G S+ F FV T E+A
Sbjct: 306 EKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHD-SGLSKGFGFVCFSTSEEAQK 364
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
+ LNGT + GR + + + ++
Sbjct: 365 ALTTLNGTLLHGRSLYIAMAQR 386
>gi|196009388|ref|XP_002114559.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
gi|190582621|gb|EDV22693.1| hypothetical protein TRIADDRAFT_28438 [Trichoplax adhaerens]
Length = 292
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 14/174 (8%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
YIGN+ R + ++ + GA+++ ++I + G + + FV A ++ +N
Sbjct: 8 YIGNLDRQTTEQSIGELFAKFGAIKRCKLITEH--GGNDPYGFVEYAEKNSAARALDAMN 65
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G G R IKVN ++ +D+N Y ++VG+L+ + + +L+ F++
Sbjct: 66 GYSFGSRAIKVNWATNSSMR--------KDTNH----YHIFVGDLSPDIDTTLLRSAFNQ 113
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G V A+V++ T K G+GFV++ + +AE A+ S+N + L G+ IR N A
Sbjct: 114 FGHVSDARVVKDSATGKPRGYGFVSYQFKHEAENAMQSMNGAWLGGRNIRTNWA 167
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 28/210 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A+ A++SS DT +++G++ +ID L + G V A V+ D TG
Sbjct: 73 AIKVNWATNSSMRKDTNH---YHIFVGDLSPDIDTTLLRSAFNQFGHVSDARVVKDSATG 129
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDS---- 175
+ R + FV + +A ++ +NG +GGR I+ N T KP + Q DS
Sbjct: 130 KPRGYGFVSYQFKHEAENAMQSMNGAWLGGRNIRTNWATRKPGATTN---RQNSDSSSTK 186
Query: 176 --NFVDSPY--------KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
N+ D Y VYVGNL+ T E L++ F G + +V +
Sbjct: 187 SLNY-DEIYLQTAVYNCTVYVGNLSAGTTEETLRRIFIPFGPIADIRVF------PDKNY 239
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+ + S + A AI ++ + +EG +++
Sbjct: 240 AFIRYMSHDHATNAIVVIHGTAVEGSQVKC 269
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 11/178 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ-SGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR--YQVVNLYVKNLDDAIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++ + + V
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIVATEPLYV 365
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G V +V+ D+ S+ + FV T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDE--NGSKGYGFVHFGTREAAERAIEKM 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + + KV + + + L A F + VY+ N + + E LK F
Sbjct: 159 NGIPLN--DCKVFVGRFKSRKEREAELGARAKEFPN----VYIKNFGEDMDDERLKDLFG 212
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 213 KFGPTLSVKVM-TDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T RS +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPLRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G VLS KV V + S G+GFV F + E AE AI +N L ++ V
Sbjct: 113 KALYDTVSAFGNVLSCKV--VCDENGSKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDAIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + V + ++
Sbjct: 354 NGRIVATEPLYVALAQR 370
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L++ FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRREFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDGNLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMR-DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 266
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVMKGKPIRI 84
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L + G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|6324312|ref|NP_014382.1| Pub1p [Saccharomyces cerevisiae S288c]
gi|308153665|sp|P32588.4|PUB1_YEAST RecName: Full=Nuclear and cytoplasmic polyadenylated RNA-binding
protein PUB1; AltName: Full=ARS consensus-binding
protein ACBP-60; AltName: Full=Poly uridylate-binding
protein; Short=Poly(U)-binding protein
gi|1301841|emb|CAA95877.1| PUB1 [Saccharomyces cerevisiae]
gi|285814634|tpg|DAA10528.1| TPA: Pub1p [Saccharomyces cerevisiae S288c]
gi|392296972|gb|EIW08073.1| Pub1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 453
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ S+ L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 182
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
>gi|295646|gb|AAC37348.1| RNA-binding protein [Saccharomyces cerevisiae]
gi|311124|gb|AAC37364.1| poly(A)-binding protein [Saccharomyces cerevisiae]
gi|151944515|gb|EDN62793.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|190409011|gb|EDV12276.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
gi|207341619|gb|EDZ69624.1| YNL016Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274171|gb|EEU09080.1| Pub1p [Saccharomyces cerevisiae JAY291]
gi|259148933|emb|CAY82177.1| Pub1p [Saccharomyces cerevisiae EC1118]
gi|323346726|gb|EGA81007.1| Pub1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352444|gb|EGA84945.1| Pub1p [Saccharomyces cerevisiae VL3]
Length = 453
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ S+ L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 182
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
>gi|71024221|ref|XP_762340.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
gi|46101864|gb|EAK87097.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
Length = 475
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++G + N+DND L ++ G V A V D+ +G+SR F +V T A ++
Sbjct: 214 QIWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTSGKSRGFGYVDFATAAAAKKAFDE 273
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKK 200
G E+ GR I+++++ + D++ +A+ N S +++GNL+ V+ + +
Sbjct: 274 GQGKEVDGRAIRIDLS---TPKGDVTENRAKKFNDQRSAPSSTLFIGNLSFDVSEDDVWN 330
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
FSE G+V ++ + P + + GFG+V F+++E A+AAI ++ L G+ +R++
Sbjct: 331 AFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAIDAMTGQELAGRPLRLD 386
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ ++ D++ EHG V + D +GR + F +V E A A I+ +
Sbjct: 314 LFIGNLSFDVSEDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAIDAM 373
Query: 144 NGTEIGGREIKVNIT 158
G E+ GR ++++ +
Sbjct: 374 TGQELAGRPLRLDFS 388
>gi|323303187|gb|EGA56986.1| Pub1p [Saccharomyces cerevisiae FostersB]
Length = 433
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 76 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 134
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 135 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 182
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ S+ L G+ +R+N A
Sbjct: 183 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 239
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 132 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 183
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 184 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 241
>gi|426198367|gb|EKV48293.1| hypothetical protein AGABI2DRAFT_142473 [Agaricus bisporus var.
bisporus H97]
Length = 559
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 9/200 (4%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
AV EE + +D + +++G + ++DND L + E G V A V D+ TG
Sbjct: 287 AVDEEQPEAKKVKLDPATPETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTG 346
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVD 179
RSR F +V T + + K+NG EI GR IKV+++ P Q+ + +
Sbjct: 347 RSRGFGYVHFSTADAVEKAL-KMNGYEIDGRAIKVDLSTPPNSNQIRERRAKVFNDEISP 405
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG---TSKSSGFGFVTFSSEEDA 236
+++GNL ++T + L F S K +R+P T + GFG+V + EDA
Sbjct: 406 PSSTLFIGNLPFSITEDGLWSYFDGH----SVKTIRLPTDRETGQLKGFGYVELENVEDA 461
Query: 237 EAAISSLNNSLLEGQRIRVN 256
+ A +++ +EG+R+RV+
Sbjct: 462 KKAFEAISGQEIEGRRVRVD 481
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+P +I D L H +V+ + D+ TG+ + F +V ++ VEDA E +
Sbjct: 410 LFIGNLPFSITEDGLWSYFDGH-SVKTIRLPTDRETGQLKGFGYVELENVEDAKKAFEAI 468
Query: 144 NGTEIGGREIKVNITE 159
+G EI GR ++V+ ++
Sbjct: 469 SGQEIEGRRVRVDYSQ 484
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 16/194 (8%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+ E+ ++ + RVY+GN+ +I +L +Q G VE A V+ + GR
Sbjct: 69 ILEQRGEDDDVDMEQAAAVGCRVYVGNLSWSIKWQDLKDHMQAAGPVELATVL--ESNGR 126
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVD 179
S+ V +T E A I LN TE+GGR+I V + +P+ V
Sbjct: 127 SKGCGIVTYETEEAAQNAIATLNDTELGGRKIFVREDREAQPVSAVKPK----------- 175
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
++VYVGNL+ V + LK + G V+ A VL P +S G G V ++++E+A A
Sbjct: 176 RGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEEP-NGRSKGCGLVEYATQEEAAKA 234
Query: 240 ISSLNNSLLEGQRI 253
I+ LNN+ LEG+ I
Sbjct: 235 IAELNNTELEGRLI 248
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 5/199 (2%)
Query: 58 RLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK 117
R V E+ + S+V F RVY+GN+ N+ EL +++ G V A+V+ ++
Sbjct: 156 RKIFVREDREAQPVSAVKPKRGF--RVYVGNLSWNVKWQELKDHMKKAGTVVHADVL-EE 212
Query: 118 YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSN 176
GRS+ V T E+A I +LN TE+ GR I V +P + +A
Sbjct: 213 PNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPR 272
Query: 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
++YVGNL + LK F G V A + P +S GFG + +++ DA
Sbjct: 273 GSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYP-DGRSRGFGIIRYTNAADA 331
Query: 237 EAAISSLNNSLLEGQRIRV 255
AI LN +EG+ I V
Sbjct: 332 WQAIERLNGLEIEGRLIEV 350
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R++Y+GN+P + +L + + G VE+A+ I + GRSR F + DA I
Sbjct: 277 GRQLYVGNLPWETNWQQLKDLFRTVGDVERAD-IAEYPDGRSRGFGIIRYTNAADAWQAI 335
Query: 141 EKLNGTEIGGREIKVNITEK 160
E+LNG EI GR I+V + ++
Sbjct: 336 ERLNGLEIEGRLIEVRLDKR 355
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDDIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LQKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPLRIMWSQR-----DPSLRKSGMGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F + E AE AI +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDDIDDERLQKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L++ FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRREFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDGNLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMR-DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVMKGKPIRI 84
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L + G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 97/172 (56%), Gaps = 5/172 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P ++ + +L ++ G + ++ V+ D +TG S+ + FV A+ I+++
Sbjct: 299 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 358
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + GR ++V + P + D S +++++ K+YV NL+ ++ ++ L F
Sbjct: 359 NGRLVEGRALEVRVAGFPSSE-DNSQQPSKETDMA----KLYVCNLSLSMNTDRLIHLFL 413
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G+V +AKV + T S G+GFV +SS A A+ LN L++G++I V
Sbjct: 414 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEV 465
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ +++ D L + G V A+V D TG S+ + FV + A +
Sbjct: 393 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 452
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYKVYVGNLAKTVTSEMLKK 200
LNG + GR+I+V ++ P + ++ + V +YV N+ ++ ++ L +
Sbjct: 453 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVE 512
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ A+V+ P T + G+GF+ F+ E A AI+++N +L+ G+ I V A
Sbjct: 513 LFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 570
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 12/180 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G +P ++ D+ + + G V +A + R +R+ V A A I+ L
Sbjct: 681 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAAIDHL 734
Query: 144 NGTEIGGREIKVNITEKPLVQ-----VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+G +IGG + V + P S + + + +D +YV +L V +E L
Sbjct: 735 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM-TNLYVSHLPSYVNNERL 793
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F GQ+ AKV+ T S GFGFV F+ A A++ +N L+G + V A
Sbjct: 794 IDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIA 853
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVGNL +V S L + F GQ++ ++V+ T S G+GFV +S A AI +
Sbjct: 299 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 358
Query: 244 NNSLLEGQRIRVNKA 258
N L+EG+ + V A
Sbjct: 359 NGRLVEGRALEVRVA 373
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 40/209 (19%)
Query: 62 VAEETASSSSSSVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
VA + S+S S+V T + + R+YI N+PR++ D++ + G + K +
Sbjct: 569 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLM------- 621
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE-----------KPLVQVDLSL 169
+ ++ V A ++ ++G + G+ + V +E KP+ ++D++
Sbjct: 622 -NLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMAN 680
Query: 170 LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
L YVG + ++T + F G+V+ A++ R +G V
Sbjct: 681 L--------------YVGRVPSSLTEDQFIDLFRPFGRVVQARMFRF------QRYGMVR 720
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + A AAI L+ + G + V A
Sbjct: 721 FDNPSCAAAAIDHLDGYQIGGSILAVRVA 749
>gi|449267712|gb|EMC78625.1| Nucleolysin TIA-1 isoform p40, partial [Columba livia]
Length = 361
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 12/174 (6%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +N
Sbjct: 1 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMN 58
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+
Sbjct: 59 GRKIMGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKAAFAP 108
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 109 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 162
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 74 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 131
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 132 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYEANTKQLSYDEVVNQSSP 191
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
SN VY G + +T +++++ FS GQ++ +V G+ FV F+S E
Sbjct: 192 SNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNSHE 240
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 241 SAAHAIVSVNGTTIEGHIVKC 261
>gi|167391953|ref|XP_001739964.1| nucleolysin TIAR [Entamoeba dispar SAW760]
gi|165896141|gb|EDR23641.1| nucleolysin TIAR, putative [Entamoeba dispar SAW760]
Length = 306
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
++ V++ I ++D L +I G V +++ DK +G + FV A
Sbjct: 42 SKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDK-SGTHAGYGFVEFVDSTTARFAK 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+ ++G + GRE+KVN + A+ N YK++VG L V ++L K
Sbjct: 101 DNMDGRVVYGRELKVNWS-----------YTAQQEN--QGSYKIFVGGLQPEVNDDLLYK 147
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F + G+V A+VL+ T KS G+GFVTF +EDAE A+ +N LEG+ I+VN
Sbjct: 148 TFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVN 203
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 54 DSTTRLFA---------VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQE 104
DSTT FA E + S + ++ + ++++G + +++D L K Q+
Sbjct: 92 DSTTARFAKDNMDGRVVYGRELKVNWSYTAQQENQGSYKIFVGGLQPEVNDDLLYKTFQK 151
Query: 105 HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI------- 157
G V A V+ TG+S+ + FV EDA ++ +NG ++ GR IKVN
Sbjct: 152 FGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIAS 211
Query: 158 -TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
TE+P D + N VY+GN+ K V S+ LK+ +E G + ++
Sbjct: 212 KTEQPKRSYDEINNETSIQNCT-----VYIGNIPKNVESDDLKQLLAEYGSIEEVRL--- 263
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+K G+ F+ FS E A +AI N ++ G +R
Sbjct: 264 ---NKDKGYAFIKFSKHESATSAILMCNGKIINGSTLRC 299
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDDIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LQKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPLRIMWSQR-----DPSLRKSGMGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F + E AE AI +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDDIDDERLQKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|365763380|gb|EHN04909.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 453
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ S+ L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 182
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
>gi|344301362|gb|EGW31674.1| hypothetical protein SPAPADRAFT_62285 [Spathaspora passalidarum
NRRL Y-27907]
Length = 478
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 102/196 (52%), Gaps = 9/196 (4%)
Query: 64 EETASSSSSSVDTPSEFARRV-YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
E T + +S+V+ E + ++ Y+GN+ ++I + L GA++ +++ DK
Sbjct: 52 ETTPITPASAVEGGREVSNKILYVGNLSKSISEEFLKDTFASAGAIQSVKILNDK-NKPG 110
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY 182
+AF+ + + A+ + +NG + EIK+N ++ + D +
Sbjct: 111 FNYAFIEYENNQAADMALNTMNGKILQNFEIKINWA---FQSATITTANTPE----DPSF 163
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
++VG+L+ + E LK+ FS+ + A V+ TS+S G+GFVTFS++ DAE A+ +
Sbjct: 164 NIFVGDLSPEINDEKLKQAFSKFKSLKQAHVMWDMQTSRSRGYGFVTFSNQSDAELALQT 223
Query: 243 LNNSLLEGQRIRVNKA 258
+N L G+ IR N A
Sbjct: 224 MNGEWLNGRAIRCNWA 239
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+ L ++ + G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 268
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 269 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 326
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L++ FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 327 LRREFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 375
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 175
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V LK+ F
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDGNLKELF 228
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 229 SQFGKTLSVKVMR-DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA 283
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 90 NFDVMKGKPIRI 101
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L + G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 313 LYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 370
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 371 NGRIVGSKPLYVALAQR 387
>gi|402891170|ref|XP_003908827.1| PREDICTED: nucleolysin TIA-1 isoform p40, partial [Papio anubis]
Length = 377
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 3/175 (1%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +N
Sbjct: 1 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 58
Query: 145 GTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
G +I G+E+KVN P Q D S + + V+VG+L+ +T+E +K F+
Sbjct: 59 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 118
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 119 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 173
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 77 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 136
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 137 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 196
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 197 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 245
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 246 RFNSHESAAHAIVSVNGTTIEGHVVKC 272
>gi|187607191|ref|NP_001120082.1| poly-U binding splicing factor 60KDa [Xenopus (Silurana)
tropicalis]
gi|165971204|gb|AAI58522.1| LOC100145091 protein [Xenopus (Silurana) tropicalis]
Length = 507
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 78 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 137
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E +F ++YV ++ + ++ E +
Sbjct: 138 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARSF----NRIYVASVHQDLSDEDI 190
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 191 KSVFEAFGKIKSCMLARDPTTGKHKGYGFIEYEKGQSSQDAVSSMNLFDLGGQYLRVGKA 250
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/86 (17%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ ++++ + + G ++ + D TG+ + + F+
Sbjct: 163 IDQLAEEARSFNRIYVASVHQDLSDEDIKSVFEAFGKIKSCMLARDPTTGKHKGYGFIEY 222
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 223 EKGQSSQDAVSSMNLFDLGGQYLRVG 248
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 108/193 (55%), Gaps = 4/193 (2%)
Query: 64 EETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
E A+ + + P++ +++Y+ N+ ++ ++ + + G V E+I K GRS+
Sbjct: 62 EVAATEETPELTQPTDNVKKLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSK-DGRSK 120
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK 183
+AFV M + E+A A ++K + E+ GR I+V + ++ + S ++ +
Sbjct: 121 GYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAKR--FKKPPSPPPPPGPRPGETRHV 178
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLS-AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
+Y NLA S L++ F+E + S A+V+ + +S+G+GFV+F ++EDAEAAIS+
Sbjct: 179 IYASNLAWKARSTHLRQLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAIST 238
Query: 243 LNNSLLEGQRIRV 255
++ L G+ +R+
Sbjct: 239 VDGKELMGRPLRL 251
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
D+ K+YV NL+ ++T+ + F++ G V ++++ +S G+ FVT +S E+A+
Sbjct: 76 TDNVKKLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSK-DGRSKGYAFVTMASGEEAQ 134
Query: 238 AAISSLNNSLLEGQRIRVNKA 258
AA+ ++ L G+ IRV A
Sbjct: 135 AAVDKFDSYELSGRIIRVELA 155
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEH-GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+Y N+ + L ++ E+ A V++D +GRS + FV T EDA A I
Sbjct: 179 IYASNLAWKARSTHLRQLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAIST 238
Query: 143 LNGTEIGGREIKVNITEK 160
++G E+ GR +++ +EK
Sbjct: 239 VDGKELMGRPLRLKFSEK 256
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+V YV NL + E L+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKVLYDTASAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T R +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR-----DPSLRRSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++L S G +LS KV V + S G+GFV F + E AE AI +N LL +++ V
Sbjct: 113 KVLYDTASAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 97/172 (56%), Gaps = 5/172 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P ++ + +L ++ G + ++ V+ D +TG S+ + FV A+ I+++
Sbjct: 298 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 357
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + GR ++V + P + D S +++++ K+YV NL+ ++ ++ L F
Sbjct: 358 NGRLVEGRALEVRVAGFPSSE-DNSQQPSKETDMA----KLYVCNLSLSMNTDRLIHLFL 412
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G+V +AKV + T S G+GFV +SS A A+ LN L++G++I V
Sbjct: 413 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEV 464
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ +++ D L + G V A+V D TG S+ + FV + A +
Sbjct: 392 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 451
Query: 143 LNGTEIGGREIKVNITEKP--LVQVDLSLLQAEDSNFVDSPY-----------KVYVGNL 189
LNG + GR+I+V ++ P L + ++ V+SP +YV N+
Sbjct: 452 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNM 511
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
++ ++ L + F G++ A+V+ P T + G+GF+ F+ E A AI+++N +L+
Sbjct: 512 PSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVG 571
Query: 250 GQRIRVNKA 258
G+ I V A
Sbjct: 572 GEMIIVRVA 580
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G +P ++ D+ + + G V +A + R +R+ V A A I+ L
Sbjct: 691 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAAIDHL 744
Query: 144 NGTEIGGREIKVNITEKPLVQ-----VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+G +IGG + V + P S + + + +D +YV +L V +E L
Sbjct: 745 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM-TNLYVSHLPSYVNNERL 803
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
F GQ+ AKV+ T S GFGFV F+ A A++ +N L+G + V
Sbjct: 804 IDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEV 860
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVGNL +V S L + F GQ++ ++V+ T S G+GFV +S A AI +
Sbjct: 298 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 357
Query: 244 NNSLLEGQRIRVNKA 258
N L+EG+ + V A
Sbjct: 358 NGRLVEGRALEVRVA 372
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 40/209 (19%)
Query: 62 VAEETASSSSSSVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
VA + S+S S+V T + + R+YI N+PR++ D++ + G + K +
Sbjct: 579 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLM------- 631
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE-----------KPLVQVDLSL 169
+ ++ V A ++ ++G + G+ + V +E KP+ ++D++
Sbjct: 632 -NLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMAN 690
Query: 170 LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
L YVG + ++T + F G+V+ A++ R +G V
Sbjct: 691 L--------------YVGRVPSSLTEDQFIDLFRPFGRVVQARMFRF------QRYGMVR 730
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + A AAI L+ + G + V A
Sbjct: 731 FDNPSCAAAAIDHLDGYQIGGSILAVRVA 759
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ ++P ++N+ L + G + +A+V+ ++YTG S+ F FV A + +
Sbjct: 789 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 848
Query: 144 NGTEIGGREIKVNI 157
NG + G ++V I
Sbjct: 849 NGYPLDGHVLEVRI 862
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D TG+S+ F FV + E+AN +E++
Sbjct: 193 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P T KS GFGFV+F E+A A+ +N + G+ + V +A
Sbjct: 212 GKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L +T ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|452819166|gb|EME26242.1| oligouridylate-binding protein, putative [Galdieria sulphuraria]
gi|452825749|gb|EME32744.1| oligouridylate-binding protein, putative [Galdieria sulphuraria]
Length = 309
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 6/190 (3%)
Query: 69 SSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFV 128
S S + PS + +Y+GN+ + + L +I + G V+ A+V+ D+ TGRS F FV
Sbjct: 2 SGGSGIYQPSGMS--LYVGNLDPRVCTELLQEIFELIGPVKLAKVVGDRNTGRSLGFGFV 59
Query: 129 MMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGN 188
A +E ++G + G+EI+++ +LQ ED + + + ++VGN
Sbjct: 60 DFYDRPTAIRAMELMHGRRVYGQEIRIDWAHA-GAGAAGRILQDED---LANMHTIFVGN 115
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L V E L K FS V AK+ + T +G+GFV+F ++DA+ A+ ++ +L
Sbjct: 116 LGPDVDEEKLMKAFSSFSSVAGAKISKDVETGLPAGYGFVSFREKKDADLAMQTMTGYIL 175
Query: 249 EGQRIRVNKA 258
G+ +R++ A
Sbjct: 176 SGRALRIDWA 185
>gi|50555934|ref|XP_505375.1| YALI0F13475p [Yarrowia lipolytica]
gi|49651245|emb|CAG78182.1| YALI0F13475p [Yarrowia lipolytica CLIB122]
Length = 422
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 6/179 (3%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ V++G + N+D+D LTK + GAV A VI +K TGRS+ F +V + DA +E
Sbjct: 168 KTVFVGGLSWNVDDDWLTKEFADAGAV-SARVITEKATGRSKGFGYVDFASGADAQKCVE 226
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS---PYK-VYVGNLAKTVTSEM 197
+ EI GR ++++I+ + Q + S + D P ++VGNL+ +
Sbjct: 227 EFQDKEIDGRTVRLDISTN-VRQTPEQKQRDRSSQYGDQLSEPADTLFVGNLSFDTNRDD 285
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L F E G V+S ++ P T + GFG+V F S ++A+AA+ L+ G+ R++
Sbjct: 286 LFGIFGEYGSVVSIRLPTHPETEQPKGFGYVQFGSVDEAKAALEGLSGYEYLGRSFRLD 344
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 70 SSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVM 129
SS D SE A +++GN+ + + D+L I E+G+V + T + + F +V
Sbjct: 258 SSQYGDQLSEPADTLFVGNLSFDTNRDDLFGIFGEYGSVVSIRLPTHPETEQPKGFGYVQ 317
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNIT 158
+V++A A +E L+G E GR +++ T
Sbjct: 318 FGSVDEAKAALEGLSGYEYLGRSFRLDYT 346
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L ++ ++G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS ++A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPDEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDGRLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ P + KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 212 SKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + ++A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPDEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|401838326|gb|EJT42016.1| PUB1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 459
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ ++ L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQGQDLNGRPLRINWA 238
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 182
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQGQDLNGRPLRINWAAK 240
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L ++ ++G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS ++A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPDEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDGRLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ P + KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 212 SKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + ++A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPDEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L ++ ++G +V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG +I G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS ++A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPDEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGDDMDDGRLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ P + KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 212 SKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + ++A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPDEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 110/214 (51%), Gaps = 9/214 (4%)
Query: 50 ASIEDSTTRLFAVAEETASSSSSSVD-----TPSEFARRVYIGNIPRNIDNDELTKIVQE 104
A+ +DS R A AE +S+ S D T + +++G + N+DND L ++
Sbjct: 358 AAAKDSKKRK-ADAEPASSTKKSKTDSNENPTHDNGIKTLWVGQLSWNVDNDWLKSEFEQ 416
Query: 105 HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI--TEKPL 162
+G V A V D+ +GRSR F +V T +A ++ +G E+ GR ++V++ P
Sbjct: 417 YGTVLDARVQCDRDSGRSRGFGYVDFATSAEALRASKEAHGKELDGRALRVDLQPARGPQ 476
Query: 163 VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKS 222
+ + +D S +++G LA +T + + F+E G+V ++ + + +
Sbjct: 477 DRAESRAKHFKDERSAPS-NTLFIGGLAWALTEDDIWNAFAEFGEVTGVRLPKEIDSGRP 535
Query: 223 SGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
GFG+V F S+++A A+ ++N L G+ IR++
Sbjct: 536 KGFGYVEFVSQDNAAKALETMNGQALGGRPIRID 569
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IG + + D++ E G V + + +GR + F +V + ++A +E +
Sbjct: 497 LFIGGLAWALTEDDIWNAFAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETM 556
Query: 144 NGTEIGGREIKVNITEK 160
NG +GGR I+++ K
Sbjct: 557 NGQALGGRPIRIDFAGK 573
>gi|297301957|ref|XP_001098541.2| PREDICTED: nucleolysin TIAR isoform 5 [Macaca mulatta]
Length = 506
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 20/219 (9%)
Query: 45 HNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQE 104
H+ + + DS ++ + SS DT + F V++G++ I +++
Sbjct: 197 HDGRRRAAPDSEVKV----NWATTPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAP 250
Query: 105 HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV 163
G + A V+ D TG+S+ + FV DA I + G +GGR+I+ N T KP
Sbjct: 251 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 310
Query: 164 -----QVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
+ + L+ ED SP VY G +A +T +++++ FS GQ++ +V
Sbjct: 311 PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-- 368
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G+ FV FS+ E A AI S+N + +EG ++
Sbjct: 369 ----PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 403
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 152 EIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSA 211
E+KVN P Q + + SN + V+VG+L+ +T+E +K F+ G++ A
Sbjct: 208 EVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAPFGKISDA 257
Query: 212 KVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 258 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 304
>gi|365758602|gb|EHN00436.1| Pub1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 455
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ ++ L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQGQDLNGRPLRINWA 238
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 182
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQTAMDTMQGQDLNGRPLRINWAAK 240
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ ++ D + E G V ++ D G+SR F FV ++ ++A +E L
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF---VDSPYKVYVGNLAKTVTSEMLKK 200
NG +G +++ V +K + +L + E N + +YV NL +V + L++
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS GQ+ SAKV+R + S GFGFV FS+ E+A+ A+++LN +LL G+ + + A
Sbjct: 328 HFSSCGQITSAKVMR-HDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMA 384
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 98/175 (56%), Gaps = 11/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ +I++ L I + G + +V + G+S+ F FV + + A A + L
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--NGKSKCFGFVQFDSDDSATAALNAL 176
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + G+++ V+ K + + S E++ F + VYV NL + +T ++++ FS
Sbjct: 177 NDTMLDGKKLFVSKFVKKCERKEAS----EETKFTN----VYVKNLGEDLTEDIIRDKFS 228
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G+V + +++ G KS GFGFV F S ++A+ A+ +LN ++L +++ V +A
Sbjct: 229 EFGKVGTVVIMK-DGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRA 282
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + EL + G + + D +G+S +A+V DA+ + L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T++ G+ +++ + + + L ++V NL ++ S L+ F
Sbjct: 91 NHTKLMGKPMRIMWSHRDPLPRKTGLAN------------LFVKNLDPSINSASLQDIFC 138
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+ G +LS KV G SK FGFV F S++ A AA+++LN+++L+G+++ V+K
Sbjct: 139 KFGNILSCKVAEENGKSKC--FGFVQFDSDDSATAALNALNDTMLDGKKLFVSK 190
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A +Y+ N+ ++D+D+L + G + A+V+ +G S+ F FV T E+A
Sbjct: 306 EKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHD-SGLSKGFGFVCFSTSEEAQK 364
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
+ LNGT + GR + + + ++
Sbjct: 365 ALTTLNGTLLHGRSLYIAMAQR 386
>gi|67465872|ref|XP_649094.1| RNA-binding protein TIA-1 [Entamoeba histolytica HM-1:IMSS]
gi|56465456|gb|EAL43711.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705857|gb|EMD45818.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica KU27]
Length = 306
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
++ V++ I ++D L +I G V +++ DK +G + FV A
Sbjct: 42 SKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDK-SGVHAGYGFVEFVDSTTARFAK 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+ ++G + GRE+KVN + + Q N YK++VG L V ++L K
Sbjct: 101 DNMDGRVVYGRELKVNWS--------YTAQQENQGN-----YKIFVGGLQPEVNDDLLYK 147
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F + G+V A+VL+ T KS G+GFVTF +EDAE A+ +N LEG+ I+VN
Sbjct: 148 TFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVN 203
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 28/219 (12%)
Query: 54 DSTTRLFA---------VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQE 104
DSTT FA E + S + ++ ++++G + +++D L K Q+
Sbjct: 92 DSTTARFAKDNMDGRVVYGRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQK 151
Query: 105 HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI------- 157
G V A V+ TG+S+ + FV EDA ++ +NG ++ GR IKVN
Sbjct: 152 FGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIAS 211
Query: 158 -TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
TE+P D + N VY+GN+ K V S+ LK+ +E G + ++
Sbjct: 212 KTEQPKRSYDEINNETSSQNCT-----VYIGNIPKNVESDDLKQLLAEYGSIEEVRL--- 263
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+K G+ F+ FS E A +AI N ++ G +R
Sbjct: 264 ---NKDKGYAFIKFSKHESATSAILMCNGKIINGSTLRC 299
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YIGN+ +D+D L ++ + G V V DK TG + + FV DA+ ++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ +++N + A+D D +++GNL V + + FS
Sbjct: 91 NMVKLYGKSLRLNKS-------------AQDRRNFDVGANIFLGNLDPDVDEKTIYDTFS 137
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G +L+AK++R P T S GFGFV+F + E ++AA++++N + + I V+ A
Sbjct: 138 TFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+ ++D + G + A+++ D TG SR F FV T E ++A + +
Sbjct: 118 IFLGNLDPDVDEKTIYDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAM 177
Query: 144 NGTEIGGREIKVNITEK 160
NG I R I V+ K
Sbjct: 178 NGQFICNRPIHVSYAYK 194
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 8/175 (4%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEV-IYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R+ NIP + DE+ + + HG+V E+ +Y ++R AFV M + E+A A +
Sbjct: 72 RLVAQNIPWDCTADEMRALFESHGSVVGVELSMYS--ANKNRGLAFVTMGSEEEALAALT 129
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LN T + R+IKV+ Q + ++D+ Y V+VGNL V + L++
Sbjct: 130 HLNSTILNDRKIKVDFARPRKKQPKQPAVVSDDT----EKYVVFVGNLTWRVRNRHLREL 185
Query: 202 FSEKGQVLSAKVL-RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+ V+SA+V+ +S+G+ FV+FSS+E A AAIS+ N +L G+ I V
Sbjct: 186 FASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINV 240
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
N+ T++ ++ F G V+ + L + +K+ G FVT SEE+A AA++ LN+++
Sbjct: 77 NIPWDCTADEMRALFESHGSVVGVE-LSMYSANKNRGLAFVTMGSEEEALAALTHLNSTI 135
Query: 248 LEGQRIRVNKA 258
L ++I+V+ A
Sbjct: 136 LNDRKIKVDFA 146
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ Q + Y+V YV NL + E
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR--YQVVNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T RS +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ + Q D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWS-----QHDPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS KV V + S G+GFV F + E AE AI +N LL +++ V
Sbjct: 113 KALYDTVSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|354500962|ref|XP_003512565.1| PREDICTED: nucleolysin TIAR [Cricetulus griseus]
Length = 336
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 46 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 103
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 104 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSP 163
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 164 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 217
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 218 IVSVNGTTIEGHVVKC 233
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 60
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 61 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 120
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 121 GQWLGGRQIRTNWA 134
>gi|169404577|pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
gi|169404578|pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 30 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 90 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 142
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ SA + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 143 KSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ A + D TG+ + + F+
Sbjct: 115 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEY 174
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + +N ++GG+ ++V P
Sbjct: 175 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205
>gi|6678349|ref|NP_033409.1| nucleolysin TIAR [Mus musculus]
gi|61557246|ref|NP_001013211.1| nucleolysin TIAR [Rattus norvegicus]
gi|2500589|sp|P70318.1|TIAR_MOUSE RecName: Full=Nucleolysin TIAR; AltName: Full=TIA-1-related protein
gi|1592563|gb|AAC52870.1| RNA binding protein TIAR [Mus musculus]
gi|12848609|dbj|BAB28019.1| unnamed protein product [Mus musculus]
gi|60552455|gb|AAH91409.1| Tia1 cytotoxic granule-associated RNA binding protein-like 1
[Rattus norvegicus]
gi|148685702|gb|EDL17649.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_c [Mus musculus]
gi|149067621|gb|EDM17173.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1
(mapped), isoform CRA_a [Rattus norvegicus]
Length = 392
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 102 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSP 219
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 273
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 274 IVSVNGTTIEGHVVKC 289
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFA 126
R +Y+GN+ R++ + ++ + G + ++I ++ R + +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N+ + ++EL I EHGA+ A V+ D G+S+ F FV ++ +DA +E L
Sbjct: 193 VFVKNLAESTTDEELKNIFAEHGAITSAVVMRDA-DGKSKCFGFVNFESADDAAKAVEAL 251
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEML 198
NG +I G E V +K + +L L + + ++ K +Y+ NL ++ E L
Sbjct: 252 NGKKIDGEEWYVGKAQK-KSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K+ FS+ G + S KV+R P + S G GFV FS+ E+A A++ +N +L
Sbjct: 311 KELFSDFGAITSCKVMRDP-SGISRGSGFVAFSTPEEASRALAEMNGKML 359
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ + ID+ L G + +V D +G+S+ + FV + E A I+KL
Sbjct: 102 IFIKNLDKGIDHKALHDTFSSFGNILSCKVATDA-SGQSKGYGFVQFDSEEAAQNAIDKL 160
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKK 200
NG + +++ V L+ +D + K V+V NLA++ T E LK
Sbjct: 161 NGMLVNDKQVYVG-----------HFLRKQDRDGALYSIKFNNVFVKNLAESTTDEELKN 209
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+E G + SA V+R KS FGFV F S +DA A+ +LN ++G+ V KA
Sbjct: 210 IFAEHGAITSAVVMRD-ADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKA 266
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P +YVG+L VT L F++ GQV+S +V R T +S G+G+V +S+ +DA A+
Sbjct: 11 PTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 70
Query: 241 SSLNNSLLEGQRIRV 255
LN + L + IR+
Sbjct: 71 DVLNFTPLNNKPIRI 85
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ +I++++L ++ + GA+ +V+ D +G SR FV T E+A+ + ++
Sbjct: 296 LYIKNLDDSINDEKLKELFSDFGAITSCKVMRDP-SGISRGSGFVAFSTPEEASRALAEM 354
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 355 NGKMLISKPLYVALAQR 371
>gi|344306484|ref|XP_003421917.1| PREDICTED: nucleolysin TIAR-like [Loxodonta africana]
Length = 504
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 106/203 (52%), Gaps = 16/203 (7%)
Query: 60 FAVAEETASSSSSSVDTPSEF----ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIY 115
+V A + ++ P+ F R +Y+GN+ R++ + ++ + G + ++I
Sbjct: 112 LSVPRAPAHAVRNARQAPATFEVQKGRLLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT 171
Query: 116 DKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDS 175
+ + + + FV DA A + +NG +I G+E+KVN P Q + + S
Sbjct: 172 EHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTS 223
Query: 176 NFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235
N + V+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ D
Sbjct: 224 NH----FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 279
Query: 236 AEAAISSLNNSLLEGQRIRVNKA 258
AE AI + L G++IR N A
Sbjct: 280 AENAIVHMGGQWLGGRQIRTNWA 302
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 214 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 271
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 272 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 331
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 332 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 385
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 386 IVSVNGTTIEGHVVKC 401
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+ L ++ + G +V+ D +G+SR F FV + EDAN ++++
Sbjct: 94 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSRGFGFVSYEKHEDANKAVDEM 152
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 153 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 210
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV F S E+A A++ +N ++
Sbjct: 211 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFPSREEATKAVTEMNGRIV 259
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 2 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 59
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V LK+ F
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDGNLKELF 112
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 113 SQFGKTLSVKVMR-DSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRA 167
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 197 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFPSREEATKAVTEM 254
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 255 NGRIVGSKPLYVALAQR 271
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR--YQVVNLYVKNLDDDIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NGT + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKVKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T RS +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRRSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++L S G +LS KV V + S G+GFV F + E AE AI +N +LL +++ V
Sbjct: 113 KVLYDTVSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+V YV NL + E L+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NGT + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRA 266
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T RS +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR-----DPSLRRSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++L S G +LS KV V + S G+GFV F + E AE AI +N +LL +++ V
Sbjct: 113 KVLYDTVSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|344255843|gb|EGW11947.1| Nucleolysin TIAR [Cricetulus griseus]
Length = 353
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 63 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 120
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 121 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSP 180
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 181 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 234
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 235 IVSVNGTTIEGHVVKC 250
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 28 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 77
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 78 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 137
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 138 GQWLGGRQIRTNWA 151
>gi|407038416|gb|EKE39116.1| RNA-binding protein TIA-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
++ V++ I ++D L +I G V +++ DK +G + FV A
Sbjct: 42 SKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDK-SGVHAGYGFVEFVDSTTARFAK 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+ ++G + GRE+KVN + + Q N YK++VG L V ++L K
Sbjct: 101 DNMDGRVVYGRELKVNWS--------YTAQQENQGN-----YKIFVGGLQPEVNDDLLYK 147
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F + G+V A+VL+ T KS G+GFVTF +EDAE A+ +N LEG+ I+VN
Sbjct: 148 TFQKFGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVN 203
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 28/219 (12%)
Query: 54 DSTTRLFA---------VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQE 104
DSTT FA E + S + ++ ++++G + +++D L K Q+
Sbjct: 92 DSTTARFAKDNMDGRVVYGRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQK 151
Query: 105 HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI------- 157
G V A V+ TG+S+ + FV EDA ++ +NG ++ GR IKVN
Sbjct: 152 FGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIAS 211
Query: 158 -TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
TE+P D + N VY+GN+ K V S+ LK+ +E G + ++
Sbjct: 212 KTEQPKRSYDEINNETSSQNCT-----VYIGNIPKNVESDDLKQLLAEYGSIEEVRL--- 263
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+K G+ F+ FS E A +AI N ++ G +R
Sbjct: 264 ---NKDKGYAFIKFSKHESATSAILMCNGKIINGSTLRC 299
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 97/172 (56%), Gaps = 5/172 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P ++ + +L ++ G + ++ V+ D +TG S+ + FV A+ I+++
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + GR ++V + P + D S +++++ K+YV NL+ ++ ++ L F
Sbjct: 271 NGRLVEGRALEVRVAGFPSSE-DNSQQPSKETDMA----KLYVCNLSLSMNTDRLIHLFL 325
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G+V +AKV + T S G+GFV +SS A A+ LN L++G++I V
Sbjct: 326 PFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEV 377
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 2/178 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ +++ D L + G V A+V D TG S+ + FV + A +
Sbjct: 305 KLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIH 364
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYKVYVGNLAKTVTSEMLKK 200
LNG + GR+I+V ++ P + ++ + V +YV N+ ++ ++ L +
Sbjct: 365 LNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVE 424
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ A+V+ P T + G+GF+ F+ E A AI+++N +L+ G+ I V A
Sbjct: 425 LFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 482
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 12/180 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G +P ++ D+ + + G V +A + R +R+ V A A I+ L
Sbjct: 593 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMF------RFQRYGMVRFDNPSCAAAAIDHL 646
Query: 144 NGTEIGGREIKVNITEKPLVQ-----VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+G +IGG + V + P S + + + +D +YV +L V +E L
Sbjct: 647 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM-TNLYVSHLPSYVNNERL 705
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F GQ+ AKV+ T S GFGFV F+ A A++ +N L+G + V A
Sbjct: 706 IDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIA 765
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVGNL +V S L + F GQ++ ++V+ T S G+GFV +S A AI +
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 244 NNSLLEGQRIRVNKA 258
N L+EG+ + V A
Sbjct: 271 NGRLVEGRALEVRVA 285
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 40/209 (19%)
Query: 62 VAEETASSSSSSVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
VA + S+S S+V T + + R+YI N+PR++ D++ + G + K +
Sbjct: 481 VAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQITKVLM------- 533
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE-----------KPLVQVDLSL 169
+ ++ V A ++ ++G + G+ + V +E KP+ ++D++
Sbjct: 534 -NLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMAN 592
Query: 170 LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
L YVG + ++T + F G+V+ A++ R +G V
Sbjct: 593 L--------------YVGRVPSSLTEDQFIDLFRPFGRVVQARMFRF------QRYGMVR 632
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + A AAI L+ + G + V A
Sbjct: 633 FDNPSCAAAAIDHLDGYQIGGSILAVRVA 661
>gi|14714709|gb|AAH10496.1| Tial1 protein [Mus musculus]
gi|148685700|gb|EDL17647.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_a [Mus musculus]
gi|149067624|gb|EDM17176.1| Tial1 cytotoxic granule-associated RNA binding protein-like 1
(mapped), isoform CRA_d [Rattus norvegicus]
Length = 375
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 85 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSP 202
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 256
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 257 IVSVNGTTIEGHVVKC 272
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>gi|320591904|gb|EFX04343.1| nucleolin protein [Grosmannia clavigera kw1407]
Length = 413
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 10/211 (4%)
Query: 53 EDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAE 112
E+ + + A EE A++ + + E + +++GN+ N+D+ L + + A
Sbjct: 137 EEPSKKRKADDEEPAAAKKAKTEEEGETSSTLFVGNLSWNVDDSVLYDEFKGFDGLTGAR 196
Query: 113 VIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQA 172
VI D+ T RSR F +V +VE A A +K+ G + GRE+K++ + D + +
Sbjct: 197 VITDRETQRSRGFGYVEFDSVEHAQAAFDKMTGYFLDGRELKIDFSTGRAKSNDANPAAS 256
Query: 173 EDSNFVD--SPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG---TSKSSGF 225
+ D SP ++VGNL+ E + FSE V + K LR+P + + GF
Sbjct: 257 RAKKYGDVTSPESDTLFVGNLSFDADEETVSAFFSE---VANVKSLRLPTDMESGRPKGF 313
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G+V+F S ED++ A +LN G+ +R++
Sbjct: 314 GYVSFYSLEDSKKAFDTLNGQSCAGRNVRLD 344
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 8/178 (4%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+ SEF +YI N +D+++L + +G + +V+ D +G+S+ F FV T E
Sbjct: 184 NKASEFTN-IYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDS-SGKSKGFGFVSFDTHE 241
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPL-VQVDLSLL---QAEDSNFVDSPYKVYVGNLA 190
A ++ +NG EI G+++ V +K Q +L L + ++ ++ K+YV NL
Sbjct: 242 AAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLD 301
Query: 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+T+ E L+K FS G ++ KV++ G +S GFG + FSS E+A A++ +N LL
Sbjct: 302 ETIDEEKLRKAFSSFGSIIRVKVMQEEG--RSRGFGLICFSSPEEAARAMAEMNGRLL 357
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L + G + ++V+ D SR + FV + A+ IE++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSVFGKILSSKVMCDDQG--SRGYGFVHFQNQAAADRAIEEM 157
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + ++ ++ + + + LQ + S F + +Y+ N + E LK+ FS
Sbjct: 158 NGVLL--KDFRLFVGPFKNRRDREAELQNKASEFTN----IYIKNFGDEMDDEKLKEFFS 211
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G+++S KV+ + KS GFGFV+F + E A+ A+ +N + GQ++ V +A
Sbjct: 212 HYGKIVSVKVM-TDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRA 265
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 178 VDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
VD+ Y+ +YVG+L VT ML FS G VLS ++ R T S G+ +V F
Sbjct: 3 VDAKYRQASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVA 62
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
DA+ A+ ++N +++GQ IR+
Sbjct: 63 DAQRALDTMNFDVIQGQSIRL 83
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ ID ++L K G++ + +V+ ++ GRSR F + + E+A + +
Sbjct: 294 KIYVKNLDETIDEEKLRKAFSSFGSIIRVKVMQEE--GRSRGFGLICFSSPEEAARAMAE 351
Query: 143 LNGTEIGGREIKVNITEKP 161
+NG +G + + + + ++
Sbjct: 352 MNGRLLGSKPVNIALAQRA 370
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ Q + Y+V YV NL + E
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR--YQVVNLYVKNLDDDIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRA 266
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T RS +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ + Q D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWS-----QHDPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS KV V + S G+GFV F + E AE AI +N LL +++ V
Sbjct: 113 KALYDTVSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 14/180 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +D+L E+G + A V+ D G+S+ F FV + +DA +E L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-DGKSKGFGFVNFENADDAARAVESL 275
Query: 144 NGTEIGGREIKVNITEKP-------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG + +E V +K V+ + +L +A D F S +YV NL +++ E
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAAD-KFQSS--NLYVKNLDPSISDE 332
Query: 197 MLKKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
LK+ FS G V S KV+R P GTSK S GFV FS+ E+A A+S L+ ++E + + V
Sbjct: 333 KLKEIFSPFGTVTSCKVMRDPNGTSKGS--GFVAFSTPEEATEAMSQLSGKMIESKPLYV 390
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++I N+ +ID+ L G + +V D +G+S+ + FV E A I
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
EKLNG + +++ V P ++ A + F + VYV NLA++ T + LK
Sbjct: 182 EKLNGMLLNDKQVYVG----PFLRRQERDSTANKTKFTN----VYVKNLAESTTDDDLKN 233
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E G++ SA V++ G KS GFGFV F + +DA A+ SLN + + V +A
Sbjct: 234 AFGEYGKITSAVVMK-DGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ N+ + +L + G V V D T RS + +V +DA I++L
Sbjct: 38 LYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + G+ I+V + + D S+ ++ N +++ NL +++ + L FS
Sbjct: 98 NYIPLYGKPIRVMYSHR-----DPSVRRSGAGN-------IFIKNLDESIDHKALHDTFS 145
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G ++S KV V + +S G+GFV +++EE A+ AI LN LL +++ V
Sbjct: 146 VFGNIVSCKVA-VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG 197
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 7/177 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GNIP + DEL I G + ++ + GRSR + V V +A I+
Sbjct: 8 RLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQ-GRSRGYGIVEYSNVNEAQVAIQT 66
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEML 198
L+G +G R I V + P + S S D+P + YVGNLA E L
Sbjct: 67 LDGHTLGDRNITVREDKAP-TKSAPSKSGGNRSTIGDTPAADGCRCYVGNLAWETNEESL 125
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
S+ G V+ A+V + PG +S G+G V F + + A +AI++L+NS L+G+ I V
Sbjct: 126 IAHCSQVGTVVQAEVAKQPG-GRSKGWGLVDFETPDAANSAINTLHNSDLQGRSIIV 181
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
++ + S+ DTP+ R Y+GN+ + + L + G V +AEV + GRS+
Sbjct: 92 KSGGNRSTIGDTPAADGCRCYVGNLAWETNEESLIAHCSQVGTVVQAEVA-KQPGGRSKG 150
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--- 181
+ V +T + AN+ I L+ +++ GR I V L +A +N P
Sbjct: 151 WGLVDFETPDAANSAINTLHNSDLQGRSIIVR------------LERAGGANKSGGPNAG 198
Query: 182 -------YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
++ V NL + TSE L++ F + G V+ A+ + T +S G+G V F + E
Sbjct: 199 RPEASSGLQIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETRE 258
Query: 235 DAEAAISSLNNSLLE 249
A+AAI N LE
Sbjct: 259 QAQAAIQGFNGVELE 273
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++ + N+P + +++L ++ Q+ G V KAE + TGRS+ + V+ +T E A A I+
Sbjct: 207 QIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQG 266
Query: 143 LNGTEIGGREIKVNI 157
NG E+ R +++ +
Sbjct: 267 FNGVELEHRPMQIKL 281
>gi|134025329|gb|AAI35084.1| LOC562370 protein [Danio rerio]
Length = 379
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 152
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ ++ + +
Sbjct: 153 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHPDLSDDDI 205
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + A+ A+SS+N L GQ +RV KA
Sbjct: 206 KSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKA 265
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ ++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 178 IDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEY 237
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ A + +N ++GG+ ++V
Sbjct: 238 DKAQSAQDAVSSMNLFDLGGQYLRVG 263
>gi|323348433|gb|EGA82678.1| Nsr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 254
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 11/169 (6%)
Query: 93 IDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152
ID++ L K + G V A VIY++ T RSR + +V + A I+++ G EI GR
Sbjct: 19 IDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRP 78
Query: 153 IKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEMLKKCFSEKGQ 207
I ++ T KP D + F D+P + +++GNL+ + + + F++ G+
Sbjct: 79 INCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGE 132
Query: 208 VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
V+S ++ P T + GFG+V FS+ EDA+ A+ +L ++ + +R++
Sbjct: 133 VVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 181
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ N D D + ++ +HG V + T + + F +V +E
Sbjct: 100 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 159
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA ++ L G I R ++++ +
Sbjct: 160 DAKKALDALQGEYIDNRPVRLDFS 183
>gi|406700097|gb|EKD03282.1| hypothetical protein A1Q2_02392 [Trichosporon asahii var. asahii
CBS 8904]
Length = 387
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G + NIDND L G V A ++ D+ T RSR F +V V+ A IE
Sbjct: 206 VFVGGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEFADVDSAIKAIE-F 264
Query: 144 NGTEIGGREIKVNIT--EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
G E+ GR ++VN KP + + S D+ +++G+L T + + +
Sbjct: 265 EGKELDGRAVRVNFANARKPDADKRAKVFNDKRSPPADT---LWIGSLPFDTTEDHIYET 321
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F E G V S ++ T + GFG+VTF A AA+ +LN S +RIR++
Sbjct: 322 FGEYGDVQSVRLPTDRETGAAKGFGYVTFGDVAQATAALEALNGSEFGSRRIRID 376
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D S A ++IG++P + D + + E+G V+ + D+ TG ++ F +V V
Sbjct: 295 DKRSPPADTLWIGSLPFDTTEDHIYETFGEYGDVQSVRLPTDRETGAAKGFGYVTFGDVA 354
Query: 135 DANAVIEKLNGTEIGGREIKVNI 157
A A +E LNG+E G R I+++
Sbjct: 355 QATAALEALNGSEFGSRRIRIDF 377
>gi|327267754|ref|XP_003218664.1| PREDICTED: nucleolysin TIAR-like [Anolis carolinensis]
Length = 342
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 46 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 103
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + L+ ED SP
Sbjct: 104 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKTTQESTTKQLRFEDVVNQSSP 163
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ+L + PG G+ FV FS+ E A A
Sbjct: 164 KNCTVYCGGIASGLTDQLMRQTFSPFGQILETRAF--PG----KGYSFVRFSTHESAAHA 217
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 218 IVSVNGTTIEGHVVKC 233
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 60
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 61 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 120
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 121 GQWLGGRQIRTNWA 134
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 8/172 (4%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ VY+ N+ + +DEL K+ E G + A V+ D G+S+ F F+ +T EDA +E
Sbjct: 217 QNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDA-DGKSKCFGFINFETAEDAAKAVE 275
Query: 142 KLNGTEIGGREIKVNITEKP--LVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSE 196
LNG + +E V +K Q S + VD Y+ +YV NL T+ E
Sbjct: 276 SLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDK-YQGLNLYVKNLDDTIDDE 334
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
LK+ FSE G + S KV+R P + S G GFV FS+ E+A A+S +N ++
Sbjct: 335 KLKELFSEFGTITSCKVMRDP-SGISRGSGFVAFSTSEEASRALSEMNGKMI 385
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + ++ D G+S+ + FV E A I+KL
Sbjct: 128 IFIKNLDKSIDNKALHDTFSSFGNILSCKIATDS-NGQSKGYGFVQYDNEESAQGAIDKL 186
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + +++ V L + E + + VYV NL+++ T + LKK F
Sbjct: 187 NGMLMNDKQVYVGHF--------LRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFG 238
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G + SA V+R KS FGF+ F + EDA A+ SLN + + V KA
Sbjct: 239 EFGNITSAVVMRD-ADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKA 292
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 13/172 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ N+ + +L + + G V V D T RS + +V DA+ +E L
Sbjct: 40 LYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEML 99
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + G+ I+V + + D +L ++ +N +++ NL K++ ++ L FS
Sbjct: 100 NFTPVNGKSIRVMYSHR-----DPTLRKSGSAN-------IFIKNLDKSIDNKALHDTFS 147
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS K+ +S G+GFV + +EE A+ AI LN L+ +++ V
Sbjct: 148 SFGNILSCKIA-TDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYV 198
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+++L ++ E G + +V+ D +G SR FV T E+A+ + ++
Sbjct: 322 LYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDP-SGISRGSGFVAFSTSEEASRALSEM 380
Query: 144 NGTEIGGREIKVNITEK 160
NG I + + V + ++
Sbjct: 381 NGKMIVSKPLYVALAQR 397
>gi|385305287|gb|EIF49275.1| nuclear localization sequence binding protein [Dekkera bruxellensis
AWRI1499]
Length = 358
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 7/180 (3%)
Query: 84 VYIGNIPRNIDNDELTKI-VQEH-GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+++G + N+D+D L + V E+ V A VI + +GRS+ F +V +V A A ++
Sbjct: 110 MFVGRLSWNVDDDGLKQFFVDENVPGVXSARVITENGSGRSKGFGYVDFDSVAHAEAAVK 169
Query: 142 KLNGTEIGGREIKVNIT-EKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSE 196
K +G EI GR + +++ KP + D+P + ++VGNL+ T +
Sbjct: 170 KYDGAEIDGRAVHLDMAASKPRSSSPNDRANNRAKKYGDTPSEPSDTLFVGNLSFEATMD 229
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
++ F G + ++ PGT GF +V FSS E+A+AA+ +N + G+ +R++
Sbjct: 230 DVRGAFESFGSIEXIRIPTRPGTEDPRGFAYVQFSSVEEAKAALDGMNGEYINGRSVRLD 289
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKG--QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
P ++VG L+ V + LK+ F ++ V SA+V+ G+ +S GFG+V F S AEA
Sbjct: 107 PGTMFVGRLSWNVDDDGLKQFFVDENVPGVXSARVITENGSGRSKGFGYVDFDSVAHAEA 166
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A+ + + ++G+ + ++ A
Sbjct: 167 AVKKYDGAEIDGRAVHLDMA 186
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 78 SEFARR------VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
+EF R VYI N ++D++ L +I G +V+ D TGRS+ F FV +
Sbjct: 181 AEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDN-TGRSKGFGFVNFE 239
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVY 185
E+A + +NG EI GR + V +K L Q +L + Q S + +Y
Sbjct: 240 KHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQG--VNLY 297
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
V NL + E L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N
Sbjct: 298 VKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNG 355
Query: 246 SLL 248
++
Sbjct: 356 RIV 358
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D+ SR FV +T E A IE +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIETM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + + E +N VY+ N + L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTN-------VYIKNFGDDMDDNRLREIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G+ LS KV+ + T +S GFGFV F E+A+ A++ +N + G+ + V +A
Sbjct: 212 SRFGKTLSVKVM-MDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRA 266
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R + +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFEVIKGRPVRI 84
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G+ I V +K + ++ Q + Y+V YV NL + E
Sbjct: 220 NGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITR--YQVVNLYVKNLDDDIDDER 277
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 278 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 326
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDS 180
S+ + FV +T E A IEK+NGT + R++ V + + +L E N
Sbjct: 105 SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPN---- 160
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
VY+ N + + E LK F + G LS KV+ + KS GFGFV+F EDA+ A+
Sbjct: 161 ---VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAV 216
Query: 241 SSLNNSLLEGQRIRVNKA 258
+N L G+ I V +A
Sbjct: 217 DEMNGKELNGKHIYVGRA 234
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +SS + +V F +DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 264 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 321
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 322 NGRIVATKPLYVALAQR 338
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G+ I V +K + ++ Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITR--YQVVNLYVKNLDDDIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NGT + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G+ I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T RS +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR-----DPSLRRSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++L S G +LS KV V + S G+GFV F + E AE AI +N +LL +++ V
Sbjct: 113 KVLYDTVSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|444316792|ref|XP_004179053.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
gi|387512093|emb|CCH59534.1| hypothetical protein TBLA_0B07170 [Tetrapisispora blattae CBS 6284]
Length = 470
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+ ++I+ D L + Q G + ++I DK + +AFV DAN ++ L
Sbjct: 85 LYVGNLDKSINEDSLKQYFQVGGPIANVKIIVDK-NNKYCNYAFVEYLKHHDANVALQTL 143
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG I EK +V+++ + + SN D + +++G+L V E L F
Sbjct: 144 NGKHI----------EKKIVKINWAFQSQQSSN--DDTFNLFIGDLNIDVNDESLTAAFK 191
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ + A V+ T +S G+GF +FS++ DA+ A+ + L G+ IR+N A
Sbjct: 192 DFPSFVQAHVMWDMQTGRSRGYGFASFSTQNDAQLAMDQMQGKELNGRPIRINWA 246
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 46/77 (59%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IG++ +++++ LT ++ + +A V++D TGRSR + F T DA ++++
Sbjct: 172 LFIGDLNIDVNDESLTAAFKDFPSFVQAHVMWDMQTGRSRGYGFASFSTQNDAQLAMDQM 231
Query: 144 NGTEIGGREIKVNITEK 160
G E+ GR I++N K
Sbjct: 232 QGKELNGRPIRINWASK 248
>gi|281346697|gb|EFB22281.1| hypothetical protein PANDA_002889 [Ailuropoda melanoleuca]
Length = 377
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 3/175 (1%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I D T + + FV A A + +N
Sbjct: 1 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAMN 58
Query: 145 GTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
G +I G+E+KVN P Q D S + + V+VG+L+ +T+E +K F+
Sbjct: 59 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 118
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 119 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 173
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 77 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 136
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 137 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 196
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 197 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 245
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 246 RFNSHESAAHAIVSVNGTTIEGHVVKC 272
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YIGN+ + + +D + ++ + G V + DK +G + + FV K+ EDA+ I+ +
Sbjct: 21 IYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKIM 80
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
+ ++ G+ IKVN ++D + +++GNL + + L + FS
Sbjct: 81 HMIKLYGKPIKVNKA-------------SQDKRTQEVGANLFIGNLDTEIDEKTLYETFS 127
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G +LS K++R P T S G+GFV++ + E ++ A++++N L + IRV A
Sbjct: 128 AFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYA 182
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + GA +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGINDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGAALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ I+++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGINDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 10/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ +DEL ++G++ A V+ D G+SR F FV + EDA +E L
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 285
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEML 198
NG + +E V +K + +L L + + D K +YV NL TVT E L
Sbjct: 286 NGKKFDDKEWYVGKAQK-KSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKL 344
Query: 199 KKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ F+E G + S KV+R P GTSK S GFV FS+ +A ++ +N ++ G+ + V
Sbjct: 345 RELFAEFGTITSCKVMRDPSGTSKGS--GFVAFSAASEASRVLNEMNGKMVGGKPLYV 400
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ +++DN L + G + +V D + G+SR + FV T + A IEKL
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + ++I V P ++ + A+ F + VYV NL++ T + LK F
Sbjct: 195 NGKVLNDKQIFVG----PFLRKEERESAADKMKFTN----VYVKNLSEATTDDELKTTFG 246
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G + SA V+R G KS FGFV F + EDA A+ +LN + + V KA
Sbjct: 247 QYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ N+ + +L E V V D T S + +V +DA ++KL
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + + G+ I++ + + + ++V NL K+V ++ L + FS
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGV------------GNLFVKNLDKSVDNKTLHEAFS 155
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G ++S KV +S G+GFV F +E+ A+ AI LN +L ++I V
Sbjct: 156 GCGTIVSCKVA-TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG 207
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ + +++L ++ E G + +V+ D +G S+ FV +A+ V+ ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 144 NGTEIGGREIKVNITEK 160
NG +GG+ + V + ++
Sbjct: 389 NGKMVGGKPLYVALAQR 405
>gi|392597176|gb|EIW86498.1| hypothetical protein CONPUDRAFT_78829 [Coniophora puteana
RWD-64-598 SS2]
Length = 439
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 13/190 (6%)
Query: 72 SSVDTPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFV 128
++ P+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV
Sbjct: 5 GNMGGPAEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFV 64
Query: 129 MMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGN 188
+ A ++ LNG +I EI+VN + ED++ + V+VG+
Sbjct: 65 EYLDMRAAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTS---GHFHVFVGD 114
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+ V E+L K F+ G + A+V+ + KS G+GF+ F + DAE AI+++N L
Sbjct: 115 LSPEVNDEVLAKAFAAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWL 174
Query: 249 EGQRIRVNKA 258
+ IRVN A
Sbjct: 175 GSRAIRVNWA 184
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 10/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ +DEL ++G++ A V+ D G+SR F FV + EDA +E L
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 285
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEML 198
NG + +E V +K + +L L + + D K +YV NL TVT E L
Sbjct: 286 NGKKFDDKEWYVGKAQK-KSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKL 344
Query: 199 KKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ F+E G + S KV+R P GTSK S GFV FS+ +A ++ +N ++ G+ + V
Sbjct: 345 RELFAEFGTITSCKVMRDPSGTSKGS--GFVAFSAASEASRVLNEMNGKMVGGKPLYV 400
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ +++DN L + G + +V D + G+SR + FV T + A IEKL
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + ++I V P ++ + A+ F + VYV NL++ T + LK F
Sbjct: 195 NGKVLNDKQIFVG----PFLRKEERESAADKMKFTN----VYVKNLSEATTDDELKTTFG 246
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G + SA V+R G KS FGFV F + EDA A+ +LN + + V KA
Sbjct: 247 QYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ N+ + +L E V V D T S + +V +DA ++KL
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + + G+ I++ + + + ++V NL K+V ++ L + FS
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGV------------GNLFVKNLDKSVDNKTLHEAFS 155
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G ++S KV +S G+GFV F +E+ A+ AI LN +L ++I V
Sbjct: 156 GCGTIVSCKVA-TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG 207
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ + +++L ++ E G + +V+ D +G S+ FV +A+ V+ ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 144 NGTEIGGREIKVNITEK 160
NG +GG+ + V + ++
Sbjct: 389 NGKMVGGKPLYVALAQR 405
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LWKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A + +N I G+ +++ +++ D SL + N ++V NL K++ +
Sbjct: 65 AEHALHTMNFDVIKGKPLRIMWSQR-----DPSLRKRGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS KV V + S G+GFV F + E AE AI +N LL +++ V
Sbjct: 113 KALYDTVSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLWKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N+P +I +DEL K+ EHG + A V+ D G S+ F F+ K E A +E L
Sbjct: 205 VFVKNLPADIGDDELGKMATEHGEITSAVVMKDD-KGGSKGFGFINFKDAESAAKCVEYL 263
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN----FVDSPYKVYVGNLA-KTVTSEML 198
N E+ G+ + +K + + +AE+S +YV NL+ + V + L
Sbjct: 264 NEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDEEVDDDAL 323
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA-EAAISSLNNSLLEGQRIRV 255
++ F+ G + S KV++ G+ KS GFGFV F+S ++A ++ +N +++G+ + V
Sbjct: 324 RELFANSGTITSCKVMK-DGSGKSKGFGFVCFTSHDEATRPPVTEMNGKMVKGKPLYV 380
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED---ANAVI 140
+Y+G++ +++ +L ++ G V V D T RS +A+V + D A+ +
Sbjct: 25 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADRAM 84
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
E LN + G+ +++ + + D S ++ N +++ NL KT+ ++ L
Sbjct: 85 ETLNYHVVNGKPMRIMWSHR-----DPSARKSGVGN-------IFIKNLDKTIDAKALHD 132
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
FS G++LS KV S G+GFV F + A+ AI ++N +EG+ + V
Sbjct: 133 TFSAFGKILSCKVA-TDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYV 186
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ + ID L G + +V D G S+ + FV + A+ I+ +
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDA-NGVSKGYGFVHFEDQAAADRAIQTV 174
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N +I G+ + V +K + D + +N V+V NL + + L K +
Sbjct: 175 NQKKIEGKIVYVAPFQK---RADRPRARTLYTN-------VFVKNLPADIGDDELGKMAT 224
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G++ SA V++ S GFGF+ F E A + LN + G+ + +A
Sbjct: 225 EHGEITSAVVMK-DDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRA 278
>gi|83773473|dbj|BAE63600.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 440
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+ N+D L +E G + ++ ++ TGRSR F +V DA E
Sbjct: 197 LFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAK 256
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSL---LQAEDSNFVD--SPYK--VYVGNLAKTVTS 195
TEI GR+I ++ T +P + QA +F D SP ++VGN+ +
Sbjct: 257 RDTEIDGRKINLDYATGRPANREQGGFQDRAQARARSFGDQASPESDTLFVGNIPFSANE 316
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L + F +KG +L ++ P + + GFG+V FSS E+A A + LN + ++G+ +R+
Sbjct: 317 DSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNELNGAEIDGRPVRL 376
Query: 256 N 256
+
Sbjct: 377 D 377
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GNIP + + D L ++ + G++ + D +GR + F +V +VE+A +L
Sbjct: 305 LFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNEL 364
Query: 144 NGTEIGGREIKVNIT 158
NG EI GR ++++ +
Sbjct: 365 NGAEIDGRPVRLDFS 379
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
++VGNL+ V L+ F E G++ +++ T +S GFG+V +++ DA A +
Sbjct: 197 LFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAK 256
Query: 244 NNSLLEGQRIRVNKA 258
++ ++G++I ++ A
Sbjct: 257 RDTEIDGRKINLDYA 271
>gi|390604168|gb|EIN13559.1| hypothetical protein PUNSTDRAFT_117298 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 425
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 11/177 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIE 141
+Y+GN+ + LT+I G V+ ++I D+ Y + FV + A ++
Sbjct: 18 HLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYIDMRAAETALQ 77
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I EI+VN + ED++ + Y V+VG+L+ V E+L+K
Sbjct: 78 TLNGRKIFDTEIRVNWAYQ-------GNQNKEDTS---NHYHVFVGDLSPEVNDEVLQKA 127
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS G + A+V+ + KS G+GF+ F + DAE AI+++N L + IRVN A
Sbjct: 128 FSAFGSLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWA 184
>gi|119569771|gb|EAW49386.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_b [Homo sapiens]
Length = 282
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 63 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 120
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 121 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 180
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 181 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 234
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 235 IVSVNGTTIEGHVVKC 250
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 28 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 77
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 78 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 137
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 138 GQWLGGRQIRTNWA 151
>gi|111185612|gb|AAI19438.1| Puf60 protein [Mus musculus]
gi|152060991|gb|AAI48275.1| Puf60 protein [Mus musculus]
Length = 241
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 44 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 103
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 104 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 156
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 157 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 216
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 129 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 188
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + +N ++GG+ ++V P
Sbjct: 189 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 219
>gi|299755830|ref|XP_001828914.2| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|298411401|gb|EAU92921.2| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 433
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 13/184 (7%)
Query: 78 SEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVE 134
+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV +
Sbjct: 10 AEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMR 69
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
A ++ LNG +I EI+VN + ED++ Y V+VG+L+ V
Sbjct: 70 AAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTS---GHYHVFVGDLSPEVN 119
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L K FS G + A+V+ + KS G+GF+ F + DAE AI+++N L + IR
Sbjct: 120 DEVLGKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR 179
Query: 255 VNKA 258
VN A
Sbjct: 180 VNWA 183
>gi|392571669|gb|EIW64841.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 437
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 78 SEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVE 134
+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV +
Sbjct: 10 AEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMR 69
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
A ++ LNG +I EI+VN + ED++ + Y V+VG+L+ V
Sbjct: 70 AAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTS---NHYHVFVGDLSPEVN 119
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L K FS G + A+V+ + KS G+GF+ F + DAE AI+++N L + IR
Sbjct: 120 DEVLGKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR 179
Query: 255 VNKA 258
VN A
Sbjct: 180 VNWA 183
>gi|291404907|ref|XP_002718787.1| PREDICTED: TIA-1 related protein-like [Oryctolagus cuniculus]
Length = 450
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 160 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 217
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 218 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 277
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 278 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 331
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 332 IVSVNGTTIEGHVVKC 347
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 12/174 (6%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I + + + + FV DA A + +N
Sbjct: 87 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMN 144
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+
Sbjct: 145 GRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAP 194
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 195 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 248
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LWKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A + +N I G+ +++ +++ D SL + N ++V NL K++ +
Sbjct: 65 AEHALHTMNFDVIKGKPLRIMWSQR-----DPSLRKRGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS KV V + S G+GFV F + E AE AI +N LL +++ V
Sbjct: 113 KALYDTVSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLWKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|54303906|gb|AAV33303.1| aging-associated gene 7 protein [Homo sapiens]
Length = 374
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 85 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 202
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 256
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 257 IVSVNGTTIEGHVVKC 272
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>gi|321479211|gb|EFX90167.1| hypothetical protein DAPPUDRAFT_300177 [Daphnia pulex]
Length = 612
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 5/177 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ + +D T + + FAFV + E A +E+
Sbjct: 121 RVYVGSISFELREDTVRQSFHPFGPIKSITMSWDPITQKHKGFAFVEYELPEAAQLALEQ 180
Query: 143 LNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG IGGR IKV + P Q + + E ++ ++++ ++ +T E +K
Sbjct: 181 MNGVVIGGRNIKVGRPSNMPQAQPVIDEIMEESRHY----NRIFIASVHPDLTEEDIKSV 236
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ ++ + P K G+GF+ + + + A AI+S+N L GQ +RV +A
Sbjct: 237 FEAFGKIKMCQLAQGPAPGKHRGYGFIEYETTQSAHDAIASMNMFDLGGQHLRVGRA 293
>gi|126273035|ref|XP_001367894.1| PREDICTED: nucleolysin TIAR isoform 2 [Monodelphis domestica]
Length = 371
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 65
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 66 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 116 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 172
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 84 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 141
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + L+ ED SP
Sbjct: 142 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENSTKQLRFEDVVNQSSP 201
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 202 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 255
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 256 IVSVNGTTIEGHVVKC 271
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 7 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 62
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 63 ALAAMNGRKILGKEVKVNWA 82
>gi|449506038|ref|XP_002188262.2| PREDICTED: nucleolysin TIAR [Taeniopygia guttata]
Length = 453
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 166 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 223
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 224 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 283
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 284 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 337
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 338 IVSVNGTTIEGHVVKC 353
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 12/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
Y+GN+ R++ + ++ + G + ++I + + + + FV DA A + +
Sbjct: 92 CYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAM 149
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+
Sbjct: 150 NGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFA 199
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 200 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 254
>gi|119223939|gb|AAI26843.1| TIAL1 protein [Bos taurus]
Length = 279
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 53 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 110
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 111 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 170
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 171 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 224
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 225 IVSVNGTTIEGHVVKC 240
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 18 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 67
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 68 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 127
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 128 GQWLGGRQIRTNWA 141
>gi|300796220|ref|NP_001179985.1| nucleolysin TIAR [Bos taurus]
gi|296472594|tpg|DAA14709.1| TPA: TIA1 cytotoxic granule-associated RNA binding protein-like 1
[Bos taurus]
Length = 380
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 85 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 202
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 256
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 257 IVSVNGTTIEGHVVKC 272
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>gi|170084123|ref|XP_001873285.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650837|gb|EDR15077.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 422
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Query: 78 SEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVE 134
+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV +
Sbjct: 5 AEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMR 64
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
A ++ LNG +I EI+VN + ED+ Y V+VG+L+ V
Sbjct: 65 AAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTT---GHYHVFVGDLSPEVN 114
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L K FS G + A+V+ + KS G+GF+ F + DAE AI+++N L + IR
Sbjct: 115 DEVLAKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR 174
Query: 255 VNKA 258
VN A
Sbjct: 175 VNWA 178
>gi|71897303|ref|NP_001026551.1| poly(U)-binding-splicing factor PUF60 [Gallus gallus]
gi|60098673|emb|CAH65167.1| hypothetical protein RCJMB04_5e8 [Gallus gallus]
Length = 366
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 199
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 200 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 172 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 231
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + +N ++GG+ ++V P
Sbjct: 232 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 262
>gi|431895395|gb|ELK04911.1| Nucleolysin TIAR [Pteropus alecto]
Length = 428
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 138 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 195
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 196 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 255
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 256 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 309
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 310 IVSVNGTAIEGHVVKC 325
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 29/191 (15%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR-----------------FAF 127
Y+GN+ R++ + ++ + G + ++I ++ SRR + F
Sbjct: 48 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQ--PDSRRVNSSVGFSVLQHTSNDPYCF 105
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V DA A + +NG +I G+E+KVN P Q + + SN + V+VG
Sbjct: 106 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVG 155
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 156 DLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW 215
Query: 248 LEGQRIRVNKA 258
L G++IR N A
Sbjct: 216 LGGRQIRTNWA 226
>gi|2281006|dbj|BAA21559.1| T-cluster binding protein [Homo sapiens]
gi|119569770|gb|EAW49385.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_a [Homo sapiens]
Length = 265
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 46 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 103
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 104 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 163
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 164 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 217
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 218 IVSVNGTTIEGHVVKC 233
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 60
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 61 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 120
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 121 GQWLGGRQIRTNWA 134
>gi|157743332|ref|NP_001099058.1| poly(U)-binding-splicing factor PUF60 [Danio rerio]
gi|157423233|gb|AAI53302.1| LOC562370 protein [Danio rerio]
Length = 518
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 152
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ ++ + +
Sbjct: 153 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHPDLSDDDI 205
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + A+ A+SS+N L GQ +RV KA
Sbjct: 206 KSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKA 265
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ ++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 178 IDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEY 237
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ A + +N ++GG+ ++V P
Sbjct: 238 DKAQSAQDAVSSMNLFDLGGQYLRVGKAVTP 268
>gi|4507499|ref|NP_003243.1| nucleolysin TIAR isoform 1 [Homo sapiens]
gi|194205608|ref|XP_001492932.2| PREDICTED: nucleolysin TIAR isoform 2 [Equus caballus]
gi|311271909|ref|XP_001928970.2| PREDICTED: nucleolysin TIAR isoform 1 [Sus scrofa]
gi|332835148|ref|XP_001154534.2| PREDICTED: nucleolysin TIAR isoform 2 [Pan troglodytes]
gi|345792875|ref|XP_865423.2| PREDICTED: nucleolysin TIAR isoform 18 [Canis lupus familiaris]
gi|390473245|ref|XP_002756491.2| PREDICTED: nucleolysin TIAR isoform 1 [Callithrix jacchus]
gi|395827975|ref|XP_003787163.1| PREDICTED: nucleolysin TIAR isoform 2 [Otolemur garnettii]
gi|397510637|ref|XP_003825699.1| PREDICTED: nucleolysin TIAR isoform 1 [Pan paniscus]
gi|402881650|ref|XP_003904379.1| PREDICTED: nucleolysin TIAR isoform 1 [Papio anubis]
gi|403259379|ref|XP_003922194.1| PREDICTED: nucleolysin TIAR [Saimiri boliviensis boliviensis]
gi|426253184|ref|XP_004020280.1| PREDICTED: nucleolysin TIAR isoform 1 [Ovis aries]
gi|426366372|ref|XP_004050232.1| PREDICTED: nucleolysin TIAR isoform 1 [Gorilla gorilla gorilla]
gi|267131|sp|Q01085.1|TIAR_HUMAN RecName: Full=Nucleolysin TIAR; AltName: Full=TIA-1-related protein
gi|189310|gb|AAA36384.1| nucleolysin TIAR [Homo sapiens]
gi|158254826|dbj|BAF83384.1| unnamed protein product [Homo sapiens]
gi|261858270|dbj|BAI45657.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1
[synthetic construct]
gi|380783711|gb|AFE63731.1| nucleolysin TIAR isoform 1 [Macaca mulatta]
gi|383408329|gb|AFH27378.1| nucleolysin TIAR isoform 1 [Macaca mulatta]
gi|384942770|gb|AFI34990.1| nucleolysin TIAR isoform 1 [Macaca mulatta]
gi|410218474|gb|JAA06456.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410257382|gb|JAA16658.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410296996|gb|JAA27098.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
Length = 375
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 85 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 202
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 256
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 257 IVSVNGTTIEGHVVKC 272
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>gi|403335220|gb|EJY66784.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 307
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+ ++ + + ++ + GA+ + DK T + FV KT EDA+ I+ +
Sbjct: 22 LYVGNLDTKVNEELVWELFLQCGAIVNVHIPRDKVTNEHSGYGFVEFKTEEDADYAIKIM 81
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
+ ++ G+ IKVN ++D + V+VGNL + V +ML+ FS
Sbjct: 82 HMVKLFGKPIKVNKA-------------SQDKRTQEVGANVFVGNLHEDVDEKMLRDVFS 128
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G VLS K++R P T S +GFV++ + E ++A+I ++N L G+ I V+ A
Sbjct: 129 SFGIVLSTKIMRDPETQVSKRYGFVSYDNFESSDASIQAMNGQYLCGKPIDVSYA 183
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E V++GN+ ++D L + G V +++ D T S+R+ FV E ++A
Sbjct: 104 EVGANVFVGNLHEDVDEKMLRDVFSSFGIVLSTKIMRDPETQVSKRYGFVSYDNFESSDA 163
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I+ +NG + G+ I V+ K
Sbjct: 164 SIQAMNGQYLCGKPIDVSYAYK 185
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 96/179 (53%), Gaps = 13/179 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + D + + + G ++ ++I++ S + FV DA++ I
Sbjct: 13 RTLYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEP---GSDPYCFVEFVNHSDASSAIT 69
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLK 199
+N GRE++VN S +Q + + D+ + ++VG+L+ + + L+
Sbjct: 70 AMNARMCLGRELRVNWAS--------SAIQQQTPHRPDTSKHHHIFVGDLSPQIETSDLR 121
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ FS G++ +V++ T KS G+GFV+F++++DAE AI +++ S L + IR N A
Sbjct: 122 EAFSPFGEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMDGSWLGSRAIRTNWA 180
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 27/190 (14%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+++G++ I+ +L + G + V+ D T +S+ + FV +DA I
Sbjct: 104 HHIFVGDLSPQIETSDLREAFSPFGEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIH 163
Query: 142 KLNGTEIGGREIKVNI-TEKP--------------LVQVDLSLLQAEDSNFVDSPYKVYV 186
++G+ +G R I+ N + KP + D Q+ SN VY
Sbjct: 164 TMDGSWLGSRAIRTNWASRKPNHKETGSYIGGHHRALNYDEVFAQSSPSNCT-----VYC 218
Query: 187 GNLAKTVTSE-MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
G L + +SE L++ F E G+++ ++ K G+ F+ F+S+E A AI + +N
Sbjct: 219 GGLNQMASSEDFLRQAFDEFGEIVDIRLF------KDKGYAFIKFNSKESACRAIVARHN 272
Query: 246 SLLEGQRIRV 255
S + GQ ++
Sbjct: 273 SDIGGQAVKC 282
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P +YVGNL VT +++ FS+ GQ+ K++ PG+ + FV F + DA +AI
Sbjct: 12 PRTLYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEPGSDP---YCFVEFVNHSDASSAI 68
Query: 241 SSLNNSLLEGQRIRVNKA 258
+++N + G+ +RVN A
Sbjct: 69 TAMNARMCLGRELRVNWA 86
>gi|359806849|ref|NP_001241058.1| uncharacterized protein LOC100776344 [Glycine max]
gi|255634852|gb|ACU17785.1| unknown [Glycine max]
Length = 340
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 23/202 (11%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
++AEE S +S+ P+ R++++ + N ++ L QEHG +E+ VIYDK TG
Sbjct: 51 SIAEEIKSIASAD---PAH--RKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTG 105
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV----DLSLLQAEDSN 176
+SR + F+ K +E + + I GR N+ + L DLSL
Sbjct: 106 KSRGYGFITFKNMESTQQAL-RAPSKLIDGRLAVCNLACESLSGTSSAPDLSLR------ 158
Query: 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
K+Y+G+L+ VTSE+L F+ G++ V T++S GFGFVT+ + E A
Sbjct: 159 ------KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAA 212
Query: 237 EAAISSLNNSLLEGQRIRVNKA 258
+ AI L + L G+ I V A
Sbjct: 213 KKAIDDLEKT-LGGRNIVVKYA 233
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 60 FAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYT 119
AV S S + P R++YIG++ + ++ L HG +E+ V YD+ T
Sbjct: 136 LAVCNLACESLSGTSSAPDLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDT 195
Query: 120 GRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
SR F FV KT E A I+ L T +GGR I V +
Sbjct: 196 NESRGFGFVTYKTAEAAKKAIDDLEKT-LGGRNIVVKYAD 234
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 9/177 (5%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P +F VY+ N ++D++++ +I E G + +V+ D G+S+ F FV +T E+A
Sbjct: 190 PKKFTN-VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDP-EGKSKGFGFVSFETPEEA 247
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAK 191
+ LNG EIGGR + +K V+ ++ + E N +Y+ NL
Sbjct: 248 EEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQG-VNLYIKNLDD 306
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L++ FS G + SAKV++ S GFGFV FSS E+A A++ +N +L
Sbjct: 307 PIDDERLREEFSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAVTEMNGRIL 362
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + ++ D+ G + + FV +T + A I ++
Sbjct: 103 IFIKNLDKSIDNKSLYDTFSAFGNILSCKIAQDEL-GNPKGYGFVHFETEDAALEAIARV 161
Query: 144 NGTEIGGREIKVN--ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+G + +++ V +++K ++ + + F + VYV N + E +K+
Sbjct: 162 DGMLLNDKKVFVGRWMSKKERIEK----MGTQPKKFTN----VYVKNFGDDMDDEQMKEI 213
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+E G+++S KV+ P KS GFGFV+F + E+AE A++ LN + G+R+ +A
Sbjct: 214 CAEAGKIVSLKVMTDP-EGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRA 269
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G+V V D T RS +A+V + A ++ +
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR ++ ++ D SL ++ N +++ NL K++ ++ L FS
Sbjct: 75 NFDPIKGRPCRIMWQQR-----DPSLRKSGVGN-------IFIKNLDKSIDNKSLYDTFS 122
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS K+ + G+GFV F +E+ A AI+ ++ LL +++ V +
Sbjct: 123 AFGNILSCKIAQDE-LGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGR 175
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L + G V A VIY++ T RSR + +V + E A ++++
Sbjct: 167 IFVGRLSWSIDDEWLKNEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKEYAEKAVKEM 226
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
+G EI GREI ++ T KP + + F D P + +++GNL+ + +
Sbjct: 227 HGKEIDGREINCDMSTSKPAAGNNDRAKK-----FGDVPSEPSETLFLGNLSFNADRDNI 281
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ FS+ G+++S ++ P T + GFG+V +++ EDA+ A+ +L ++ + +R++
Sbjct: 282 SEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYTNVEDAKKALDALQGEYIDNRPVRLD 339
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ ++ E LK F G V+ A+V+ GT +S G+G+V F ++E AE A+
Sbjct: 164 PATIFVGRLSWSIDDEWLKNEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKEYAEKAV 223
Query: 241 SSLNNSLLEGQRIRVN 256
++ ++G+ I +
Sbjct: 224 KEMHGKEIDGREINCD 239
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D PSE + +++GN+ N D D ++++ + G + + T + + F +V VE
Sbjct: 258 DVPSEPSETLFLGNLSFNADRDNISEMFSKFGEIVSVRIPTHPETEQPKGFGYVQYTNVE 317
Query: 135 DANAVIEKLNGTEIGGREIKVNI-TEKP 161
DA ++ L G I R ++++ T +P
Sbjct: 318 DAKKALDALQGEYIDNRPVRLDFSTPRP 345
>gi|126323028|ref|XP_001370705.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Monodelphis
domestica]
Length = 637
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 208 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 267
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 268 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 320
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 321 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 380
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 293 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 352
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 353 EKAQSSQDAVSSMNLFDLGGQYLRVG 378
>gi|335775520|gb|AEH58599.1| nucleolysin TIAR-like protein, partial [Equus caballus]
Length = 242
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 41 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 98
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 99 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 158
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 159 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 212
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 213 IVSVNGTTIEGHVVKC 228
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 6 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 55
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 56 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 115
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 116 GQWLGGRQIRTNWA 129
>gi|387017380|gb|AFJ50808.1| Nucleolysin TIAR [Crotalus adamanteus]
Length = 388
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 101 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMTTGKSKGYGF 158
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 159 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 218
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ + V G+ FV FS+ E A A
Sbjct: 219 KNCTVYCGGIASGLTDQLMRQTFSPFGQIVETRAFPV------KGYSFVRFSTHESAAHA 272
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 273 IVSVNGTTIEGHVVKC 288
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 29/194 (14%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR----------------- 124
+ +Y+GN+ R++ + ++ + G + ++I ++ SRR
Sbjct: 8 KTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQ--PDSRRVNSSVGFSVLQHTSNDP 65
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 115
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 116 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMG 175
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 176 GQWLGGRQIRTNWA 189
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 106/210 (50%), Gaps = 7/210 (3%)
Query: 55 STTRLFAVAEETASSSSSSVDTPS--EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAE 112
S R A E A + +V+ P+ E + +++GN+ NID D L + + G +
Sbjct: 205 SKKRKAEEAAEPAIKKTKTVEEPAGAEGIKNLFVGNLSWNIDEDWLRREFEGFGEIVGCR 264
Query: 113 VIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQA 172
+I D+ TGR + F +V T DA +++ E+ GR + V+ + P + D
Sbjct: 265 IITDRETGRGKGFGYVEFATSADAAKAQAEMHQYELDGRPLNVDFS-TPRQKPDAGKTND 323
Query: 173 EDSNFVD---SPYK-VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ + D +P +++GNL+ T++ +++ F+E G + + T GFG+V
Sbjct: 324 RANKYGDKRSAPSNTLFLGNLSFDCTNDSIQEIFAEYGNITRVSLPTDRDTGSIKGFGYV 383
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F S+E+A AA+ +LN + G+ IR++ A
Sbjct: 384 DFGSQEEATAALDALNGQDIAGRNIRIDYA 413
>gi|417410268|gb|JAA51610.1| Putative apoptosis-promoting rna-binding protein tia-1/tiar rrm
superfamily, partial [Desmodus rotundus]
Length = 382
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 91 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 148
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 149 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 208
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 209 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 262
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 263 IVSVNGTTIEGHVVKC 278
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 29/191 (15%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR-----------------FAF 127
Y+GN+ R++ + ++ + G + ++I ++ SRR + F
Sbjct: 1 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQ--PDSRRVNSSVGFSVLQHTSNDPYCF 58
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V DA A + +NG +I G+E+KVN P Q + + SN + V+VG
Sbjct: 59 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVG 108
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 109 DLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW 168
Query: 248 LEGQRIRVNKA 258
L G++IR N A
Sbjct: 169 LGGRQIRTNWA 179
>gi|355562824|gb|EHH19418.1| hypothetical protein EGK_20118, partial [Macaca mulatta]
gi|355766617|gb|EHH62534.1| hypothetical protein EGM_20905, partial [Macaca fascicularis]
gi|440900070|gb|ELR51281.1| Nucleolysin TIAR, partial [Bos grunniens mutus]
Length = 381
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 91 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 148
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 149 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 208
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 209 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 262
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 263 IVSVNGTTIEGHVVKC 278
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 29/191 (15%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR-----------------FAF 127
Y+GN+ R++ + ++ + G + ++I ++ SRR + F
Sbjct: 1 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQ--PDSRRVNSSVGFSVLQHTSNDPYCF 58
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V DA A + +NG +I G+E+KVN P Q + + SN + V+VG
Sbjct: 59 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVG 108
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 109 DLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW 168
Query: 248 LEGQRIRVNKA 258
L G++IR N A
Sbjct: 169 LGGRQIRTNWA 179
>gi|344236628|gb|EGV92731.1| Poly(U)-binding-splicing factor PUF60 [Cricetulus griseus]
Length = 271
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 130 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 182
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 183 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 242
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 155 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 214
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + +N ++GG+ ++V P
Sbjct: 215 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 245
>gi|125549538|gb|EAY95360.1| hypothetical protein OsI_17193 [Oryza sativa Indica Group]
Length = 290
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 14/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R++Y+ NIP + E+ K+ + GAV+ EVI K + + FAFV M T E+A A +E
Sbjct: 80 RKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDG-KKKGFAFVTMATAEEAAAAVE 138
Query: 142 KLNGTEIGGREIKVNITE---KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
KLN ++ GR I+V ++ KP ++L+ +K+YV NL + +
Sbjct: 139 KLNSLDVMGRTIRVEFSKSFRKPAPPPPGTILER---------HKLYVSNLPWKARAPNM 189
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
K+ F K LSAKV+ + KS+G+GFV+F ++E+AEAA++ L+ L G+ +R+
Sbjct: 190 KE-FCSKFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRL 245
>gi|392569148|gb|EIW62322.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 556
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +++G + N+DND L + E G V A V D+ TG+SR F +V T E A
Sbjct: 294 EGTKSIFVGRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGYVEFATTEAVEA 353
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDS-NFVDS---PYKV-YVGNLAKTV 193
+ LNG EI GR + ++ +E Q D + + + F DS P V +VGNL+
Sbjct: 354 AL-LLNGKEIDGRPVNIDKSE----QKDKGAAREKRAEKFGDSASEPSAVLFVGNLSWDC 408
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
T + + + F E G V S ++ T + GFG+V F+ E A+ A L+ + + G+ I
Sbjct: 409 TEDQVWEVFGEHGDVKSVRLPTDRETGRPKGFGYVEFTDIETAKKAFEGLSGTEVAGRPI 468
Query: 254 RVN 256
R++
Sbjct: 469 RLD 471
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D+ SE + +++GN+ + D++ ++ EHG V+ + D+ TGR + F +V +E
Sbjct: 390 DSASEPSAVLFVGNLSWDCTEDQVWEVFGEHGDVKSVRLPTDRETGRPKGFGYVEFTDIE 449
Query: 135 DANAVIEKLNGTEIGGREIKVNITE 159
A E L+GTE+ GR I+++ ++
Sbjct: 450 TAKKAFEGLSGTEVAGRPIRLDYSQ 474
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
++VG L+ V ++ L + F+E G+V+SA+V T KS GFG+V F++ E EAA+ L
Sbjct: 299 IFVGRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGYVEFATTEAVEAAL-LL 357
Query: 244 NNSLLEGQRIRVNK 257
N ++G+ + ++K
Sbjct: 358 NGKEIDGRPVNIDK 371
>gi|50408254|ref|XP_456766.1| DEHA2A10010p [Debaryomyces hansenii CBS767]
gi|49652430|emb|CAG84729.1| DEHA2A10010p [Debaryomyces hansenii CBS767]
Length = 463
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 101/192 (52%), Gaps = 10/192 (5%)
Query: 68 SSSSSSVDTPSEFARRV-YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
++ +S+V+ E + ++ Y+G + +++ ++ L + GA++ +++ DK +A
Sbjct: 83 TNPASAVEGGREVSNKILYVGGLHKSVSDEMLKDLFAVAGAIQSVKILNDK-NRPGFNYA 141
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
F+ + + A+ + LNG I EIK+N + +S L ++ F ++V
Sbjct: 142 FIEFENTQSADMALHTLNGRIINNSEIKINWAYQ---SSTISSLNPDEPTF-----NIFV 193
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ V E L K FS+ + A V+ TS+S G+GFV+F + DAE A+ ++N
Sbjct: 194 GDLSPEVDDETLNKSFSKFPSLKQAHVMWDMQTSRSRGYGFVSFGQQADAELALQTMNGE 253
Query: 247 LLEGQRIRVNKA 258
+ G+ IR N A
Sbjct: 254 WISGRAIRCNWA 265
>gi|449282273|gb|EMC89133.1| Nucleolysin TIAR, partial [Columba livia]
Length = 378
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 91 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 148
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 149 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 208
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 209 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 262
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 263 IVSVNGTTIEGHVVKC 278
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 25/189 (13%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFAFVM 129
Y+GN+ R++ + ++ + G + ++I ++ R + + FV
Sbjct: 1 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVE 60
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
DA A + +NG +I G+E+KVN P Q + + SN + V+VG+L
Sbjct: 61 FYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDL 110
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L
Sbjct: 111 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 170
Query: 250 GQRIRVNKA 258
G++IR N A
Sbjct: 171 GRQIRTNWA 179
>gi|355714554|gb|AES05042.1| poly-U binding splicing factor 60KDa [Mustela putorius furo]
Length = 314
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 191 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 243
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 244 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 303
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 216 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 275
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + +N ++GG+ ++V P
Sbjct: 276 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 306
>gi|16215602|emb|CAC95017.1| TIAR protein [Xenopus laevis]
Length = 389
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 25/192 (13%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFA 126
R +Y+GN+ R++ + ++ + G + + I ++ GR + +
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKSITEQTDGRRVGASVSFPVLPNANNDPYC 67
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 117
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ +T+E +K F+ G++ A+V++ TSKS G+GFV+F ++ DAE AI +
Sbjct: 118 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATSKSKGYGFVSFYNKLDAENAIVHMGGQ 177
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 178 WLGGRQIRTNWA 189
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D T +S+ + F
Sbjct: 101 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATSKSKGYGF 158
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP------------LVQVDLSLLQAED 174
V DA I + G +GGR+I+ N T KP ++ D + Q+
Sbjct: 159 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFDDVVNQSTA 218
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
N VY G + +T +++++ F GQ+L +V G+ F+ FS+ +
Sbjct: 219 KNCT-----VYCGGIGSGLTEQLMRQTFGVFGQILEIRVF------PEKGYSFIRFSTHD 267
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 268 SAAHAIVSVNGTTIEGHVVKC 288
>gi|303324711|pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
gi|303324712|pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 15 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 74
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 75 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 127
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 128 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 187
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 100 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 159
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + +N ++GG+ ++V P
Sbjct: 160 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 190
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 10/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ +DEL ++G++ A V+ D G+SR F FV + EDA +E L
Sbjct: 222 VYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 280
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEML 198
NG + +E V +K + +L L + + D+ K +YV NL TVT E L
Sbjct: 281 NGKKFDDKEWYVGKAQK-KSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKL 339
Query: 199 KKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ F+E G + S KV+R P GTSK S GFV FS+ +A ++ +N ++ G+ + V
Sbjct: 340 RELFAEFGTITSCKVMRDPSGTSKGS--GFVAFSAASEASRVLNEMNGKMVGGKPLYV 395
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ +++DN L + G + +V D + G+SR + FV T + A IEKL
Sbjct: 131 LFVKNLDKSVDNKTLHETFSGCGTIVSCKVAAD-HMGQSRGYGFVQFDTEDSAKNAIEKL 189
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + ++I V P ++ + A+ F + VYV NL++ T + LK F
Sbjct: 190 NGKVLNDKQIFVG----PFLRKEERESAADKMKFTN----VYVKNLSEVTTDDELKTTFG 241
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G + SA V+R G KS FGFV F + EDA A+ +LN + + V KA
Sbjct: 242 QYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 295
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ N+ + +L E V V D T S + +V EDA ++KL
Sbjct: 43 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKL 102
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + + G+ I++ + + + ++V NL K+V ++ L + FS
Sbjct: 103 NYSTLNGKMIRITYSSRDSSARRSGV------------GNLFVKNLDKSVDNKTLHETFS 150
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G ++S KV +S G+GFV F +E+ A+ AI LN +L ++I V
Sbjct: 151 GCGTIVSCKVA-ADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG 202
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ + +++L ++ E G + +V+ D +G S+ FV +A+ V+ ++
Sbjct: 325 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 383
Query: 144 NGTEIGGREIKVNITEK 160
NG +GG+ + V + ++
Sbjct: 384 NGKMVGGKPLYVALAQR 400
>gi|441599875|ref|XP_004087575.1| PREDICTED: nucleolysin TIAR isoform 2 [Nomascus leucogenys]
gi|441599878|ref|XP_003255076.2| PREDICTED: nucleolysin TIAR isoform 1 [Nomascus leucogenys]
gi|119569773|gb|EAW49388.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_d [Homo sapiens]
Length = 353
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 63 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 120
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 121 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 180
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 181 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 234
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 235 IVSVNGTTIEGHVVKC 250
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 28 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 77
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 78 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 137
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 138 GQWLGGRQIRTNWA 151
>gi|395501989|ref|XP_003755369.1| PREDICTED: nucleolysin TIAR [Sarcophilus harrisii]
Length = 392
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 105 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 162
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 163 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 222
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 223 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 276
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 277 IVSVNGTTIEGHVVKC 292
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 25/189 (13%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFAFVM 129
Y+GN+ R++ + ++ + G + ++I ++ R + + FV
Sbjct: 15 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVE 74
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
DA A + +NG +I G+E+KVN P Q + + SN + V+VG+L
Sbjct: 75 FYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDL 124
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L
Sbjct: 125 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 184
Query: 250 GQRIRVNKA 258
G++IR N A
Sbjct: 185 GRQIRTNWA 193
>gi|417410125|gb|JAA51540.1| Putative apoptosis-promoting rna-binding protein tia-1/tiar rrm
superfamily, partial [Desmodus rotundus]
Length = 367
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 76 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 133
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 134 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 193
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 194 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 247
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 248 IVSVNGTTIEGHVVKC 263
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 12/174 (6%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I + + + + FV DA A + +N
Sbjct: 3 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMN 60
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+
Sbjct: 61 GRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAP 110
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 111 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 164
>gi|170098488|ref|XP_001880463.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644901|gb|EDR09150.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 154
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 55/76 (72%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL+ T + L++ FSE GQVL + V+R T +S GFGFVTFSS ++A+AAI
Sbjct: 4 KVYVGNLSWNTTDDTLRQAFSEFGQVLDSIVMRDRDTGRSRGFGFVTFSSGQEADAAIGG 63
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+RI+VN A
Sbjct: 64 LNEQELDGRRIKVNLA 79
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ N +D L + E G V + V+ D+ TGRSR F FV + ++A+A I
Sbjct: 4 KVYVGNLSWNTTDDTLRQAFSEFGQVLDSIVMRDRDTGRSRGFGFVTFSSGQEADAAIGG 63
Query: 143 LNGTEIGGREIKVNI 157
LN E+ GR IKVN+
Sbjct: 64 LNEQELDGRRIKVNL 78
>gi|389639074|ref|XP_003717170.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|351642989|gb|EHA50851.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|440475727|gb|ELQ44390.1| nucleolysin TIA-1 [Magnaporthe oryzae Y34]
gi|440486439|gb|ELQ66302.1| nucleolysin TIA-1 [Magnaporthe oryzae P131]
Length = 479
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + D L +I + G V+ ++I DK + + FV A
Sbjct: 80 PEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAA 138
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ ++ LNG + EI+VN Q S + + SN + ++VG+L+ V E
Sbjct: 139 DRAMQTLNGRRVHQSEIRVNWA----YQAATSATKEDTSNH----FHIFVGDLSNEVNDE 190
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR N
Sbjct: 191 VLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCN 250
Query: 257 KA 258
A
Sbjct: 251 WA 252
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L +I G +V+ D TGRSR F FV E+A + ++
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ GR I V +K + ++ ++ E N +YV NL + + L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D++ SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +++ E +N VY+ N + + + L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-------VYIKNFGEDMDDKRLREIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G LS KV+ + T +S GFGFV + + E+A+ A+S +N + G+ I V +A
Sbjct: 212 SAFGNTLSVKVM-MDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G ++S +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFEVIKGRPIRI 84
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+D L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 14/180 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +D+L E+G + A V+ D G+S+ F FV + +DA +E L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275
Query: 144 NGTEIGGREIKVNITEKP-------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG + +E V +K V+ + +L +A D F S +YV NL +++ E
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAAD-KFQSS--NLYVKNLDPSISDE 332
Query: 197 MLKKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
LK+ FS G V S+KV+R P GTSK S GFV F++ E+A A+S L+ ++E + + V
Sbjct: 333 KLKEIFSPFGTVTSSKVMRDPNGTSKGS--GFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++I N+ +ID+ L G + +V D +G+S+ + FV E A I
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
EKLNG + +++ V P ++ A + F + VYV NLA++ T + LK
Sbjct: 182 EKLNGMLLNDKQVYVG----PFLRRQERDSTANKTKFTN----VYVKNLAESTTDDDLKN 233
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E G++ SA V++ G KS GFGFV F + +DA A+ SLN + + V +A
Sbjct: 234 AFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 14/192 (7%)
Query: 66 TASSSSSSVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
T++ ++S T ++F +Y+G++ N+ + +L + G V V D T RS
Sbjct: 19 TSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLG 78
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ +V +DA I++LN + G+ I+V + + D S+ ++ N +
Sbjct: 79 YGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR-----DPSVRRSGAGN-------I 126
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
++ NL +++ + L FS G ++S KV V + +S G+GFV +++EE A+ AI LN
Sbjct: 127 FIKNLDESIDHKALHDTFSSFGNIVSCKVA-VDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 245 NSLLEGQRIRVN 256
LL +++ V
Sbjct: 186 GMLLNDKQVYVG 197
>gi|301759213|ref|XP_002915456.1| PREDICTED: nucleolysin TIAR-like [Ailuropoda melanoleuca]
Length = 477
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 187 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 244
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 245 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 304
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 305 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 358
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 359 IVSVNGTTIEGHVVKC 374
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 12/174 (6%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I + + + + FV DA A + +N
Sbjct: 114 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMN 171
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+
Sbjct: 172 GRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAP 221
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 222 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 275
>gi|326503644|dbj|BAJ86328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 102/187 (54%), Gaps = 15/187 (8%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
+ A ++ + E R++++GN+P E K+ E G V+ EVI K GR R
Sbjct: 62 QAAEPAAEGDEELGETRRKLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMK-DGRKRG 120
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE---KPLVQVDLSLLQAEDSNFVDSP 181
FAFV M T E+A AV+EK +G +I GR IKV ++ KP + A+
Sbjct: 121 FAFVTMATAEEAAAVVEKFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAK-------- 172
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
YK+YV NLA S LK+ FS+ V SA + V KS+G+GFV+F ++E+AEAA+S
Sbjct: 173 YKLYVSNLAWKARSADLKEFFSQFNPV-SANI--VFDDRKSAGYGFVSFGTKEEAEAALS 229
Query: 242 SLNNSLL 248
LN L
Sbjct: 230 ELNGKEL 236
>gi|281338083|gb|EFB13667.1| hypothetical protein PANDA_003438 [Ailuropoda melanoleuca]
Length = 340
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 91 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 148
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 149 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 208
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 209 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 262
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 263 IVSVNGTTIEGHVVKC 278
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 25/189 (13%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFAFVM 129
Y+GN+ R++ + ++ + G + ++I ++ R + + FV
Sbjct: 1 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVE 60
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
DA A + +NG +I G+E+KVN P Q + + SN + V+VG+L
Sbjct: 61 FYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDL 110
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L
Sbjct: 111 SPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 170
Query: 250 GQRIRVNKA 258
G++IR N A
Sbjct: 171 GRQIRTNWA 179
>gi|45383446|ref|NP_989687.1| nucleolysin TIAR isoform 1 [Gallus gallus]
gi|28883275|gb|AAO49721.1| TIAR [Gallus gallus]
Length = 388
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 101 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 158
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 159 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 218
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 219 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 272
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 273 IVSVNGTTIEGHVVKC 288
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 27/193 (13%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR----------------F 125
R +Y+GN+ R++ + ++ + G + ++I ++ SRR +
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQ-PDSSRRVNSVGFSVLQHTSNDPY 66
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVY 185
FV DA A + +NG +I G+E+KVN P Q + + SN + V+
Sbjct: 67 CFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVF 116
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 117 VGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 176
Query: 246 SLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 177 QWLGGRQIRTNWA 189
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 15/93 (16%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVL-RVPGTSK---SSGFG---------- 226
P +YVGNL++ VT ++ + FS+ G S K++ P +S+ S GF
Sbjct: 7 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSSRRVNSVGFSVLQHTSNDPY 66
Query: 227 -FVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FV F DA AA++++N + G+ ++VN A
Sbjct: 67 CFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 99
>gi|238505292|ref|XP_002383875.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|317151540|ref|XP_001824733.2| nucleolin protein Nsr1 [Aspergillus oryzae RIB40]
gi|220689989|gb|EED46339.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|391872083|gb|EIT81226.1| nuclear localization sequence binding protein [Aspergillus oryzae
3.042]
Length = 525
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+ N+D L +E G + ++ ++ TGRSR F +V DA E
Sbjct: 282 LFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAK 341
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSL---LQAEDSNFVD--SPYK--VYVGNLAKTVTS 195
TEI GR+I ++ T +P + QA +F D SP ++VGN+ +
Sbjct: 342 RDTEIDGRKINLDYATGRPANREQGGFQDRAQARARSFGDQASPESDTLFVGNIPFSANE 401
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L + F +KG +L ++ P + + GFG+V FSS E+A A + LN + ++G+ +R+
Sbjct: 402 DSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNELNGAEIDGRPVRL 461
Query: 256 N 256
+
Sbjct: 462 D 462
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GNIP + + D L ++ + G++ + D +GR + F +V +VE+A +L
Sbjct: 390 LFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNEL 449
Query: 144 NGTEIGGREIKVNIT 158
NG EI GR ++++ +
Sbjct: 450 NGAEIDGRPVRLDFS 464
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
++VGNL+ V L+ F E G++ +++ T +S GFG+V +++ DA A +
Sbjct: 282 LFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAK 341
Query: 244 NNSLLEGQRIRVNKA 258
++ ++G++I ++ A
Sbjct: 342 RDTEIDGRKINLDYA 356
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 14/180 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +D+L E+G + A V+ D G+S+ F FV + +DA +E L
Sbjct: 201 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 259
Query: 144 NGTEIGGREIKVNITEKP-------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG + +E V +K V+ + +L +A D F S +YV NL +++ E
Sbjct: 260 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAAD-KFQSS--NLYVKNLDPSISDE 316
Query: 197 MLKKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
LK+ FS G V S+KV+R P GTSK S GFV F++ E+A A+S L+ ++E + + V
Sbjct: 317 KLKEIFSPFGTVTSSKVMRDPNGTSKGS--GFVAFATPEEATEAMSQLSGKMIESKPLYV 374
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++I N+ +ID+ L G + +V D +G+S+ + FV E A I
Sbjct: 107 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 165
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
EKLNG + +++ V P ++ A + F + VYV NLA++ T + LK
Sbjct: 166 EKLNGMLLNDKQVYVG----PFLRRQERDSTANKTKFTN----VYVKNLAESTTDDDLKN 217
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E G++ SA V++ G KS GFGFV F + +DA A+ SLN + + V +A
Sbjct: 218 AFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 274
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 14/192 (7%)
Query: 66 TASSSSSSVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
T++ ++S T ++F +Y+G++ N+ + +L + G V V D T RS
Sbjct: 3 TSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLG 62
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ +V +DA I++LN + G+ I+V + + D S+ ++ N +
Sbjct: 63 YGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR-----DPSVRRSGAGN-------I 110
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
++ NL +++ + L FS G ++S KV V + +S G+GFV +++EE A+ AI LN
Sbjct: 111 FIKNLDESIDHKALHDTFSSFGNIVSCKVA-VDSSGQSKGYGFVQYANEESAQKAIEKLN 169
Query: 245 NSLLEGQRIRVN 256
LL +++ V
Sbjct: 170 GMLLNDKQVYVG 181
>gi|281341440|gb|EFB17024.1| hypothetical protein PANDA_011097 [Ailuropoda melanoleuca]
Length = 512
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 199
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 200 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 172 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 231
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 232 EKAQSSQDAVSSMNLFDLGGQYLRVG 257
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N +D++ L ++ + +G + +V+ D ++GR++ F FV + DA + L
Sbjct: 193 VFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDL 252
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
N +I GR + V +K + Q +L L++AE +N +YV NL ++ E L
Sbjct: 253 NMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQG-VNLYVKNLDDSLDDERL 311
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K F G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 RKEFMPFGTITSAKVMSEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 359
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN + G + +V+ D+ S+ + FV T E AN IEK+
Sbjct: 101 VFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENG--SKGYGFVHFATEEAANKSIEKV 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + G+++ V + D + + F + V+V N + E L++ F
Sbjct: 159 NGMLLNGKKVYVGKFMSRKERYDA--MGGQQKKFTN----VFVKNFGDELDDEGLREMFE 212
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G+++S KV++ + ++ GFGFV F DAE A LN + G+ + V +A
Sbjct: 213 RYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRA 267
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ +V F DAE A+ S+
Sbjct: 13 LYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGRPIRI 84
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++D++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 297 LYVKNLDDSLDDERLRKEFMPFGTITSAKVMSE--GGRSKGFGFVCFSSPEEATKAVTEM 354
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 355 NGRIVSTKPLYVALAQR 371
>gi|119569772|gb|EAW49387.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1,
isoform CRA_c [Homo sapiens]
Length = 336
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 46 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 103
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 104 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 163
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 164 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 217
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 218 IVSVNGTTIEGHVVKC 233
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 60
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 61 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 120
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 121 GQWLGGRQIRTNWA 134
>gi|268564468|ref|XP_002639117.1| C. briggsae CBR-RNP-6 protein [Caenorhabditis briggsae]
Length = 744
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I I D L K G ++ + +D TG + FAFV + E A E
Sbjct: 103 RIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGHHKTFAFVEYEIPEAALLAQES 162
Query: 143 LNGTEIGGREIKVN---------ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+NG +GGR +KVN P Q + ++Q + + ++VYV ++ +
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKY----FRVYVASVHPDL 218
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
+ L F GQ++ ++ R P GFG++ F++ AI+ +N L GQ +
Sbjct: 219 SESELAGVFEAFGQIIKCQLARTPTGRGHRGFGYIEFNNMNSQNEAIAGMNMFDLGGQYL 278
Query: 254 RVNKA 258
RV K
Sbjct: 279 RVGKC 283
>gi|77695912|ref|NP_001029097.1| nucleolysin TIAR isoform 2 [Homo sapiens]
gi|73998714|ref|XP_852319.1| PREDICTED: nucleolysin TIAR isoform 2 [Canis lupus familiaris]
gi|114633030|ref|XP_001154768.1| PREDICTED: nucleolysin TIAR isoform 6 [Pan troglodytes]
gi|311271911|ref|XP_003133244.1| PREDICTED: nucleolysin TIAR isoform 2 [Sus scrofa]
gi|338716472|ref|XP_003363459.1| PREDICTED: nucleolysin TIAR [Equus caballus]
gi|390473251|ref|XP_003734574.1| PREDICTED: nucleolysin TIAR isoform 2 [Callithrix jacchus]
gi|395827973|ref|XP_003787162.1| PREDICTED: nucleolysin TIAR isoform 1 [Otolemur garnettii]
gi|397510639|ref|XP_003825700.1| PREDICTED: nucleolysin TIAR isoform 2 [Pan paniscus]
gi|402881652|ref|XP_003904380.1| PREDICTED: nucleolysin TIAR isoform 2 [Papio anubis]
gi|426253186|ref|XP_004020281.1| PREDICTED: nucleolysin TIAR isoform 2 [Ovis aries]
gi|426366374|ref|XP_004050233.1| PREDICTED: nucleolysin TIAR isoform 2 [Gorilla gorilla gorilla]
gi|158255404|dbj|BAF83673.1| unnamed protein product [Homo sapiens]
gi|380783709|gb|AFE63730.1| nucleolysin TIAR isoform 2 [Macaca mulatta]
gi|383408327|gb|AFH27377.1| nucleolysin TIAR isoform 2 [Macaca mulatta]
gi|384942768|gb|AFI34989.1| nucleolysin TIAR isoform 2 [Macaca mulatta]
gi|410218476|gb|JAA06457.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410257384|gb|JAA16659.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
gi|410296998|gb|JAA27099.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Pan
troglodytes]
Length = 392
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 102 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 219
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 273
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 274 IVSVNGTTIEGHVVKC 289
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFA 126
R +Y+GN+ R++ + ++ + G + ++I ++ R + +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 11/181 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ Q + Y+V YV NL + E
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR--YQVVNLYVKNLDDDIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L+K FS G + SAKV+ G +S GFGFV FSS E+A A++ +N ++ + + V+
Sbjct: 310 LRKAFSPFGTITSAKVMMEGG--RSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYVSL 367
Query: 258 A 258
A
Sbjct: 368 A 368
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRA 266
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + V D T RS +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ + Q D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWS-----QHDPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS KV V + S G+GFV F + E AE AI +N LL +++ V
Sbjct: 113 KALYDTVSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K G + A+V+ + GRSR F FV + E+A + ++
Sbjct: 296 LYVKNLDDDIDDERLRKAFSPFGTITSAKVMME--GGRSRGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V++ +
Sbjct: 354 NGIIVATKPLYVSLAHR 370
>gi|338728499|ref|XP_003365686.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 2
[Equus caballus]
Length = 516
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 199
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 200 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 172 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 231
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 232 EKAQSSQDAVSSMNLFDLGGQYLRVG 257
>gi|27924240|gb|AAH45086.1| Tia1 protein, partial [Xenopus laevis]
Length = 427
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 25/192 (13%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFA 126
R +Y+GN+ R++ + ++ + G + ++I ++ GR + +
Sbjct: 46 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQTDGRRVGASVSFPVMPNANNDPYC 105
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 106 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 155
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 156 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 215
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 216 WLGGRQIRTNWA 227
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 139 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 196
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD------- 179
V DA I + G +GGR+I+ N T KP + F D
Sbjct: 197 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSS 256
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G + ++ +++++ F GQ+L +V G+ F+ FS+ + A A
Sbjct: 257 KNCTVYCGGIGAGLSEQLMRQTFGVFGQILEIRVF------PEKGYSFIRFSTHDSAAHA 310
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 311 IVSVNGTTIEGHVVKC 326
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 27/179 (15%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+++L ++ +G V+ D TG+S+ F FV + EDA ++ +
Sbjct: 193 VYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDD-TGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK--------------VYVGNL 189
NG E+ GR++ V +K + E N + ++ +YV NL
Sbjct: 252 NGKELNGRQVYVGRAQK----------KGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTN-------VYIKNFGEDMDDEKLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G LS +V+ T KS GFGFV+F EDA+ A+ +N L G+++ V +A
Sbjct: 212 GNYGPALSVRVM-TDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRA 266
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I GR +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGRPLRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F + E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|351710501|gb|EHB13420.1| Nucleolysin TIAR [Heterocephalus glaber]
Length = 392
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 102 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 219
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 273
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 274 IVSVNGTTIEGHVVKC 289
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFA 126
R +Y+GN+ R++ + ++ + G + ++I ++ R + +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
>gi|146420743|ref|XP_001486325.1| hypothetical protein PGUG_01996 [Meyerozyma guilliermondii ATCC
6260]
Length = 397
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GNIP+ ++ L ++ + + ++++DK +AFV T EDA +V+
Sbjct: 80 LYVGNIPKTVNEQYLHELFDK---TKSVKLLHDK-NKPGFNYAFVEFDTREDAESVLTAF 135
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAKTVTSEMLKKCF 202
NG+E+GG IK+N + LS + S + P Y ++VG+L+ V E L K F
Sbjct: 136 NGSEVGGSSIKINWAYQ------LSTISTSSS--PELPLYTIFVGDLSAEVDDETLGKAF 187
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ A V+ TS+S G+GFV+F+ +AE A+ ++ + G+ IR N A
Sbjct: 188 DQFPSRKQAHVMWDMQTSRSRGYGFVSFADPAEAENALVTMPGLFIGGRAIRCNWA 243
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 69 SSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFV 128
S+SSS + P +++G++ +D++ L K + + ++A V++D T RSR + FV
Sbjct: 157 STSSSPELP---LYTIFVGDLSAEVDDETLGKAFDQFPSRKQAHVMWDMQTSRSRGYGFV 213
Query: 129 MMKTVEDANAVIEKLNGTEIGGREIKVN 156
+A + + G IGGR I+ N
Sbjct: 214 SFADPAEAENALVTMPGLFIGGRAIRCN 241
>gi|326918217|ref|XP_003205387.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Meleagris
gallopavo]
Length = 516
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 199
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 200 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 172 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 231
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 232 EKAQSSQDAVSSMNLFDLGGQYLRVG 257
>gi|327290985|ref|XP_003230202.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Anolis
carolinensis]
Length = 541
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 109 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 168
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 169 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 221
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 222 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 281
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 194 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 253
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 254 EKAQSSQDAVSSMNLFDLGGQYLRVG 279
>gi|449495396|ref|XP_002188522.2| PREDICTED: poly(U)-binding-splicing factor PUF60 [Taeniopygia
guttata]
Length = 514
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 199
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 200 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 172 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 231
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + +N ++GG+ ++V P
Sbjct: 232 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 262
>gi|296480748|tpg|DAA22863.1| TPA: poly(U)-binding-splicing factor PUF60 [Bos taurus]
Length = 530
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 161 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 213
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 214 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 186 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 245
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 246 EKAQSSQDAVSSMNLFDLGGQYLRVG 271
>gi|402794180|ref|NP_001258028.1| poly(U)-binding-splicing factor PUF60 isoform g [Homo sapiens]
gi|426360971|ref|XP_004047701.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Gorilla
gorilla gorilla]
gi|441648312|ref|XP_003280819.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1
[Nomascus leucogenys]
Length = 530
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 161 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 213
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 214 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 186 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 245
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 246 EKAQSSQDAVSSMNLFDLGGQYLRVG 271
>gi|148697576|gb|EDL29523.1| RIKEN cDNA 2410104I19, isoform CRA_d [Mus musculus]
Length = 553
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 124 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 183
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 184 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 236
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 237 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 296
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 209 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 268
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 269 EKAQSSQDAVSSMNLFDLGGQYLRVG 294
>gi|431908112|gb|ELK11715.1| Poly(U)-binding-splicing factor PUF60 [Pteropus alecto]
Length = 501
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 72 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 131
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 132 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 184
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 185 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 244
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 157 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 216
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 217 EKAQSSQDAVSSMNLFDLGGQYLRVG 242
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 11/175 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEV-IYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R+ NIP + D++ + +HG+V E+ +Y+ + R+R AFV M + E+A + +
Sbjct: 74 RLIAQNIPWDCTADDMRALFGKHGSVVDVELSMYN--STRNRGLAFVTMGSEEEALSALN 131
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LN T + R IKV+ T Q + + V+VGNL V S L++
Sbjct: 132 HLNSTTLNDRTIKVDFTRSRKKQYVVPSAPMPK-------HSVFVGNLTWRVRSRHLREL 184
Query: 202 FSEKGQVLSAKVL-RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+ V S +V+ +S+G+GFV+FSS+E AEAAIS+ N + L G+ I V
Sbjct: 185 FASTPGVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINV 239
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
N+ T++ ++ F + G V+ + L + ++++ G FVT SEE+A +A++ LN++
Sbjct: 79 NIPWDCTADDMRALFGKHGSVVDVE-LSMYNSTRNRGLAFVTMGSEEEALSALNHLNSTT 137
Query: 248 LEGQRIRVN 256
L + I+V+
Sbjct: 138 LNDRTIKVD 146
>gi|209862867|ref|NP_001129505.1| poly(U)-binding-splicing factor PUF60 isoform c [Homo sapiens]
gi|109087696|ref|XP_001087604.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 3 [Macaca
mulatta]
gi|441648305|ref|XP_004090875.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Nomascus
leucogenys]
gi|15030041|gb|AAH11265.1| PUF60 protein [Homo sapiens]
gi|15080471|gb|AAH11979.1| PUF60 protein [Homo sapiens]
gi|119602595|gb|EAW82189.1| fuse-binding protein-interacting repressor, isoform CRA_f [Homo
sapiens]
Length = 516
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 199
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 200 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 172 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 231
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 232 EKAQSSQDAVSSMNLFDLGGQYLRVG 257
>gi|410042304|ref|XP_003951412.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 530
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 161 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 213
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 214 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 186 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 245
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 246 EKAQSSQDAVSSMNLFDLGGQYLRVG 271
>gi|403302944|ref|XP_003942108.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 509
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 199
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 200 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 172 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 231
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 232 EKAQSSQDAVSSMNLFDLGGQYLRVG 257
>gi|395860112|ref|XP_003802359.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1
[Otolemur garnettii]
Length = 558
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 189 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 241
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 242 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 214 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 273
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 274 EKAQSSQDAVSSMNLFDLGGQYLRVG 299
>gi|355780002|gb|EHH64478.1| 60 kDa poly(U)-binding-splicing factor [Macaca fascicularis]
Length = 521
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 173 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 225
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 226 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 285
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 198 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 257
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 258 EKAQSSQDAVSSMNLFDLGGQYLRVG 283
>gi|294954602|ref|XP_002788227.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239903488|gb|EER20023.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 303
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
VD P R+V+IG IP + D D+L ++ +G+V +++YDK TGR++ + T
Sbjct: 60 VDDP----RKVFIGGIPVSGDKDKLIALLSRYGSVIDCDIMYDKETGRNKGYGRATYSTP 115
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN-----------FVDSPY 182
+ANA I + I + +++ KPL++ ++ ++N +D P
Sbjct: 116 AEANAAIRSGDANMIDAKCVEI----KPLLRPPTNIPTTPNTNRFNNHDNATGYTMDGPC 171
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KV++G + +V + L S G+V ++ R T + GFGF A+AA
Sbjct: 172 KVFLGGIPPSVDEDKLAHHLSRYGRVAEVRIYRDMETGRHKGFGFAIMGDPSQAKAACHG 231
Query: 243 LNNSLLE 249
NN+ ++
Sbjct: 232 GNNNYID 238
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 171 QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230
+ + S VD P KV++G + + + L S G V+ ++ T ++ G+G T+
Sbjct: 53 RVDPSRLVDDPRKVFIGGIPVSGDKDKLIALLSRYGSVIDCDIMYDKETGRNKGYGRATY 112
Query: 231 SSEEDAEAAISSLNNSLLEGQRIRV 255
S+ +A AAI S + ++++ + + +
Sbjct: 113 STPAEANAAIRSGDANMIDAKCVEI 137
>gi|403302946|ref|XP_003942109.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 492
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 130 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 182
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 183 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 242
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 155 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 214
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 215 EKAQSSQDAVSSMNLFDLGGQYLRVG 240
>gi|197100546|ref|NP_001127017.1| poly(U)-binding-splicing factor PUF60 [Pongo abelii]
gi|75040908|sp|Q5R469.1|PUF60_PONAB RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor
gi|55733539|emb|CAH93447.1| hypothetical protein [Pongo abelii]
Length = 558
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 189 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 241
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 242 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 214 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 273
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 274 EKAQSSQDAVSSMNLFDLGGQYLRVG 299
>gi|410042300|ref|XP_003951410.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 516
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 199
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 200 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 172 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 231
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 232 EKAQSSQDAVSSMNLFDLGGQYLRVG 257
>gi|345324102|ref|XP_001514793.2| PREDICTED: nucleolysin TIAR-like [Ornithorhynchus anatinus]
Length = 452
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 165 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 222
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + L+ ED SP
Sbjct: 223 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENSTKQLRFEDVVNQSSP 282
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 283 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 336
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 337 IVSVNGTTIEGHVVKC 352
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ FV DA A + +NG +I G+E+KVN P Q + + SN + V
Sbjct: 130 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHV 179
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
+VG+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 180 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 239
Query: 245 NSLLEGQRIRVNKA 258
L G++IR N A
Sbjct: 240 GQWLGGRQIRTNWA 253
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+++L +I + G V+ D+ +G R F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDE-SGGGRGFGFVSFENHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLL---QAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG E+ GR + V +K + Q++L +D +YV NL + E L+
Sbjct: 252 NGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KEFSPFGSITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ SR + FV +T + A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SRGYGFVHFETHDAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTN-------VYIKNFGEDMDDEKLKEIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G S +V+ + GFGFV+F + EDA+ A+ +N L G+ + V +A
Sbjct: 212 SKFGNATSVRVM-TDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 14/174 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ +++ L + GA+ V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ +++ +++ D SL ++ N +++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGQPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS KV V + S G+GFV F + + AE AI +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGR 172
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|338728501|ref|XP_001496155.3| PREDICTED: poly(U)-binding-splicing factor PUF60-like isoform 1
[Equus caballus]
Length = 499
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 130 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 182
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 183 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 242
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 155 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 214
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 215 EKAQSSQDAVSSMNLFDLGGQYLRVG 240
>gi|301773444|ref|XP_002922145.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60-like [Ailuropoda melanoleuca]
Length = 577
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 139 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 198
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 199 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 251
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 252 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 311
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 224 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 283
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 284 EKAQSSQDAVSSMNLFDLGGQYLRVG 309
>gi|207079925|ref|NP_001128734.1| DKFZP468L0227 protein [Pongo abelii]
gi|402794126|ref|NP_001258026.1| poly(U)-binding-splicing factor PUF60 isoform e [Homo sapiens]
gi|426360969|ref|XP_004047700.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Gorilla
gorilla gorilla]
gi|441648309|ref|XP_003280820.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2
[Nomascus leucogenys]
gi|55725023|emb|CAH89379.1| hypothetical protein [Pongo abelii]
Length = 513
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 84 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 143
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 144 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 196
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 197 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 256
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 169 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 228
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 229 EKAQSSQDAVSSMNLFDLGGQYLRVG 254
>gi|402794208|ref|NP_001258029.1| poly(U)-binding-splicing factor PUF60 isoform h [Homo sapiens]
gi|109087698|ref|XP_001087484.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Macaca
mulatta]
gi|332263566|ref|XP_003280822.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 4
[Nomascus leucogenys]
gi|16307289|gb|AAH09734.1| PUF60 protein [Homo sapiens]
gi|119602596|gb|EAW82190.1| fuse-binding protein-interacting repressor, isoform CRA_g [Homo
sapiens]
gi|261859062|dbj|BAI46053.1| poly-U binding splicing factor 60KDa [synthetic construct]
Length = 499
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 130 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 182
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 183 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 242
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 155 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 214
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 215 EKAQSSQDAVSSMNLFDLGGQYLRVG 240
>gi|114051121|ref|NP_001039598.1| poly(U)-binding-splicing factor PUF60 [Bos taurus]
gi|122144872|sp|Q2HJG2.1|PUF60_BOVIN RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor
gi|88682957|gb|AAI05448.1| Poly-U binding splicing factor 60KDa [Bos taurus]
Length = 530
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 161 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 213
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 214 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 186 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 245
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 246 EKAQSSQDAVSSMNLFDLGGQYLRVG 271
>gi|340502094|gb|EGR28811.1| splicing factor subunit 4, putative [Ichthyophthirius multifiliis]
Length = 267
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 93/175 (53%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G I + + + L ++ + G V + DK TG + + FV K+ EDA+ I+ +
Sbjct: 14 IYVGGIDQKVTQEVLWELFSQCGIVVNVHLPKDKITGEHQGYGFVEFKSEEDADYSIKIM 73
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
+ ++ G+ IKVN ++D + +++GNL +++T + L FS
Sbjct: 74 HLVKLYGKPIKVNKA-------------SQDKRTQEVGANIFIGNLDQSITEQQLHDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G ++S +++R P +S G+ FV++ + E A+AAI+++N ++I V A
Sbjct: 121 QFGLIISRRIVRDPDNDESKGYAFVSYDNFEAADAAINTMNGQFFGSKKINVQYA 175
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++IGN+ ++I +L + G + ++ D S+ +AFV E A+A
Sbjct: 96 EVGANIFIGNLDQSITEQQLHDTFSQFGLIISRRIVRDPDNDESKGYAFVSYDNFEAADA 155
Query: 139 VIEKLNGTEIGGREIKV 155
I +NG G ++I V
Sbjct: 156 AINTMNGQFFGSKKINV 172
>gi|348555826|ref|XP_003463724.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60-like [Cavia porcellus]
Length = 564
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 132 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 191
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 192 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 244
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 245 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 304
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 217 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 276
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 277 EKAQSSQDAVSSMNLFDLGGQYLRVG 302
>gi|297300233|ref|XP_001087975.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 6 [Macaca
mulatta]
Length = 559
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 190 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 242
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 243 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 215 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 274
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 275 EKAQSSQDAVSSMNLFDLGGQYLRVG 300
>gi|402794155|ref|NP_001258027.1| poly(U)-binding-splicing factor PUF60 isoform f [Homo sapiens]
gi|119602601|gb|EAW82195.1| fuse-binding protein-interacting repressor, isoform CRA_l [Homo
sapiens]
Length = 558
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 189 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 241
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 242 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 214 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 273
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 274 EKAQSSQDAVSSMNLFDLGGQYLRVG 299
>gi|6176532|gb|AAF05605.1|AF190744_1 poly-U binding splicing factor PUF60 [Homo sapiens]
Length = 556
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 127 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 186
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 187 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 239
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 240 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 299
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 212 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 271
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 272 EKAQSSQDAVSSMNLFDLGGQYLRVG 297
>gi|426235336|ref|XP_004011640.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
PUF60 [Ovis aries]
Length = 506
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 84 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 143
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 144 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 196
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 197 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 256
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 169 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 228
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + +N ++GG+ ++V P
Sbjct: 229 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 259
>gi|410042302|ref|XP_003951411.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 513
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 84 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 143
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 144 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 196
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 197 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 256
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 169 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 228
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 229 EKAQSSQDAVSSMNLFDLGGQYLRVG 254
>gi|390475872|ref|XP_002759200.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1
[Callithrix jacchus]
Length = 563
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 134 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 193
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 194 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 246
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 247 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 306
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 219 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 278
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 279 EKAQSSQDAVSSMNLFDLGGQYLRVG 304
>gi|326496905|dbj|BAJ98479.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 94/170 (55%), Gaps = 15/170 (8%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R++++GN+P E K+ E G V+ EVI K GR R FAFV M T E+A AV+E
Sbjct: 60 RKLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMK-DGRKRGFAFVTMATAEEAAAVVE 118
Query: 142 KLNGTEIGGREIKVNITE---KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
K +G +I GR IKV ++ KP + A+ YK+YV NLA S L
Sbjct: 119 KFDGHDINGRVIKVEFSKSFRKPAPPSSPDTIVAK--------YKLYVSNLAWKARSADL 170
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K+ FS+ V + V KS+G+GFV+F ++E+AEAA+S LN L
Sbjct: 171 KEFFSQFNPVSANIVFD---DRKSAGYGFVSFGTKEEAEAALSELNGKEL 217
>gi|417402731|gb|JAA48201.1| Putative polypyrimidine tract-binding protein puf60 rrm superfamily
[Desmodus rotundus]
Length = 558
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 189 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 241
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 242 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 214 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 273
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 274 EKAQSSQDAVSSMNLFDLGGQYLRVG 299
>gi|410042306|ref|XP_003951413.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Pan troglodytes]
Length = 499
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 130 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 182
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 183 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 242
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 155 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 214
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 215 EKAQSSQDAVSSMNLFDLGGQYLRVG 240
>gi|359321052|ref|XP_848710.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Canis
lupus familiaris]
Length = 560
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 191 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 243
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 244 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 303
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 216 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 275
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 276 EKAQSSQDAVSSMNLFDLGGQYLRVG 301
>gi|403416100|emb|CCM02800.1| predicted protein [Fibroporia radiculosa]
Length = 433
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 11/177 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIE 141
+Y+GN+ + LT+I G V+ ++I D+ Y + FV + A ++
Sbjct: 17 HLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMRAAETALQ 76
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I EI+VN + ED++ + Y V+VG+L+ V E+L K
Sbjct: 77 TLNGRKIFDTEIRVNWAYQ-------GQQNKEDTS---NHYHVFVGDLSPEVNDEVLGKA 126
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS G + A+V+ + KS G+GF+ F + DAE AI+++N L + IRVN A
Sbjct: 127 FSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWA 183
>gi|380810662|gb|AFE77206.1| poly(U)-binding-splicing factor PUF60 isoform a [Macaca mulatta]
gi|383416607|gb|AFH31517.1| poly(U)-binding-splicing factor PUF60 isoform a [Macaca mulatta]
Length = 560
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 191 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 243
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 244 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 303
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 216 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 275
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 276 EKAQSSQDAVSSMNLFDLGGQYLRVG 301
>gi|156845624|ref|XP_001645702.1| hypothetical protein Kpol_1043p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156116369|gb|EDO17844.1| hypothetical protein Kpol_1043p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 442
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+ ++I+ D L + Q G + +VI DK +AFV DA+ ++ L
Sbjct: 79 LYVGNLDKSINEDILKQYFQVGGPITNVKVINDK--NNEANYAFVEYSQHHDASIALKTL 136
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG +I +K+N Q++ + D + +++G+L V E L F
Sbjct: 137 NGKQIENNTLKINWA-----------FQSQQNTTSDETFNLFIGDLNVDVDDETLVAAFK 185
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ + A V+ T +S G+GFV+FS+ +DA+ A+ ++ S L G+++R+N A
Sbjct: 186 DFKSFIQAHVMWDMQTGRSRGYGFVSFSNLDDAQVAMDTMQGSELNGRQLRINWA 240
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 9/121 (7%)
Query: 41 SYSLHNLKTASIEDSTTRL-FAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELT 99
S +L L IE++T ++ +A + ++S + + ++IG++ ++D++ L
Sbjct: 130 SIALKTLNGKQIENNTLKINWAFQSQQNTTSDETFN--------LFIGDLNVDVDDETLV 181
Query: 100 KIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
++ + +A V++D TGRSR + FV ++DA ++ + G+E+ GR++++N
Sbjct: 182 AAFKDFKSFIQAHVMWDMQTGRSRGYGFVSFSNLDDAQVAMDTMQGSELNGRQLRINWAS 241
Query: 160 K 160
K
Sbjct: 242 K 242
>gi|17978512|ref|NP_510965.1| poly(U)-binding-splicing factor PUF60 isoform a [Homo sapiens]
gi|397497388|ref|XP_003819493.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Pan
paniscus]
gi|402879352|ref|XP_003903307.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Papio
anubis]
gi|441648299|ref|XP_004090873.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Nomascus
leucogenys]
gi|74761960|sp|Q9UHX1.1|PUF60_HUMAN RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor; AltName:
Full=FUSE-binding protein-interacting repressor;
Short=FBP-interacting repressor; AltName:
Full=Ro-binding protein 1; Short=RoBP1; AltName:
Full=Siah-binding protein 1; Short=Siah-BP1
gi|6684440|gb|AAF23589.1|AF114818_1 Ro ribonucleoprotein-binding protein 1 [Homo sapiens]
gi|48146403|emb|CAG33424.1| SIAHBP1 [Homo sapiens]
gi|119602593|gb|EAW82187.1| fuse-binding protein-interacting repressor, isoform CRA_d [Homo
sapiens]
gi|158258178|dbj|BAF85062.1| unnamed protein product [Homo sapiens]
gi|410220384|gb|JAA07411.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
gi|410303418|gb|JAA30309.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
Length = 559
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 190 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 242
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 243 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 215 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 274
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 275 EKAQSSQDAVSSMNLFDLGGQYLRVG 300
>gi|73974710|ref|XP_857040.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 6 [Canis
lupus familiaris]
Length = 543
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 174 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 226
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 227 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 286
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 199 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 258
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 259 EKAQSSQDAVSSMNLFDLGGQYLRVG 284
>gi|409049562|gb|EKM59039.1| hypothetical protein PHACADRAFT_249208 [Phanerochaete carnosa
HHB-10118-sp]
Length = 292
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 10/198 (5%)
Query: 63 AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
E + + VD S + +++G + N+DN L + G + A V D+ TGRS
Sbjct: 20 GEAVEPAQKARVDDGSAPTKTIFVGMLSWNVDNAWLESEFAQCGEIVSAHVQTDRNTGRS 79
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT-EKPLVQVDLSLLQAEDSNFVDSP 181
R F FV + E + +E LNG EI GR I V+ + EK QV + F D+P
Sbjct: 80 RGFGFVTFASPEAVDKALE-LNGKEIDGRSINVDKSVEKDQNQV----RERRARTFGDAP 134
Query: 182 Y----KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+++VGNL+ T E L + FS+ G + S + + + GFG+V F E A+
Sbjct: 135 SEPSSRLFVGNLSFDATEEQLWEVFSDYGSIKSVHMPTSRDSGRPKGFGYVEFEDIESAK 194
Query: 238 AAISSLNNSLLEGQRIRV 255
A SL + G+ IR+
Sbjct: 195 KAHESLVGQEIAGRAIRL 212
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 49/85 (57%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D PSE + R+++GN+ + ++L ++ ++G+++ + + +GR + F +V + +E
Sbjct: 132 DAPSEPSSRLFVGNLSFDATEEQLWEVFSDYGSIKSVHMPTSRDSGRPKGFGYVEFEDIE 191
Query: 135 DANAVIEKLNGTEIGGREIKVNITE 159
A E L G EI GR I++ ++
Sbjct: 192 SAKKAHESLVGQEIAGRAIRLEFSQ 216
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 213 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 271
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 272 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 329
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 330 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 378
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 178
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 179 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 231
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 232 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 286
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 316 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 373
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 374 NGRIVATKPLYVALAQR 390
>gi|351698432|gb|EHB01351.1| Poly(U)-binding-splicing factor PUF60, partial [Heterocephalus
glaber]
Length = 556
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 127 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 186
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 187 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 239
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 240 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 299
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 212 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 271
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 272 EKAQSSQDAVSSMNLFDLGGQYLRVG 297
>gi|332831342|ref|XP_528257.3| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Pan
troglodytes]
Length = 559
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 190 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 242
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 243 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 215 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 274
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 275 EKAQSSQDAVSSMNLFDLGGQYLRVG 300
>gi|395512680|ref|XP_003760563.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Sarcophilus
harrisii]
Length = 553
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 124 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 183
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 184 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 236
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 237 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 296
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 209 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 268
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 269 EKAQSSQDAVSSMNLFDLGGQYLRVG 294
>gi|410987958|ref|XP_004000259.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Felis catus]
Length = 502
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 73 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 132
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 133 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 185
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 186 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 245
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 158 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 217
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 218 EKAQSSQDAVSSMNLFDLGGQYLRVG 243
>gi|354491098|ref|XP_003507693.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Cricetulus
griseus]
Length = 582
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 153 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 212
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 213 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 265
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 266 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 325
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 238 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 297
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 298 EKAQSSQDAVSSMNLFDLGGQYLRVG 323
>gi|257196186|ref|NP_001158072.1| poly(U)-binding-splicing factor PUF60 isoform c [Mus musculus]
gi|14714891|gb|AAH10601.1| Puf60 protein [Mus musculus]
Length = 499
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 130 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 182
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 183 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 242
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 155 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 214
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 215 EKAQSSQDAVSSMNLFDLGGQYLRVG 240
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + ++G +V+ D +G+S+ F FV + EDAN ++ +
Sbjct: 199 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDM 257
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG ++ G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 258 NGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 315
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 316 LRKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 364
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 164
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R KV + + + L A+ F + VY+ N + + E LK+ FS
Sbjct: 165 NGMLLNDR--KVFVGRFKCRREREAELGAKAKEFTN----VYIKNFGEDMDDERLKETFS 218
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P + KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 219 KYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRA 272
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ ++ GRS+ F FV + E+A + ++
Sbjct: 302 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 359
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 360 NGRIVGSKPLYVALAQR 376
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F D E
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADGE 66
>gi|395860114|ref|XP_003802360.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2
[Otolemur garnettii]
Length = 542
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 173 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 225
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 226 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 285
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 198 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 257
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 258 EKAQSSQDAVSSMNLFDLGGQYLRVG 283
>gi|390602556|gb|EIN11949.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 161
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL+ T E L+ FS GQ+L + V+R T +S GFGFVTFSS +A+ AI+S
Sbjct: 4 KVYVGNLSWNTTDESLRAAFSHYGQILDSIVMRDRDTGRSRGFGFVTFSSSAEADNAIAS 63
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+RIRVN A
Sbjct: 64 LNEQDLDGRRIRVNLA 79
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ N ++ L +G + + V+ D+ TGRSR F FV + +A+ I
Sbjct: 4 KVYVGNLSWNTTDESLRAAFSHYGQILDSIVMRDRDTGRSRGFGFVTFSSSAEADNAIAS 63
Query: 143 LNGTEIGGREIKVNI 157
LN ++ GR I+VN+
Sbjct: 64 LNEQDLDGRRIRVNL 78
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 27/179 (15%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+++L ++ ++G V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK--------------VYVGNL 189
NG E+ GR++ V +K + E N + ++ +YV NL
Sbjct: 252 NGKELNGRQVYVGRAQK----------KGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTN-------VYIKNFGEDMDDEKLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G LS +V+ + KS GFGFV+F EDA+ A+ +N L G+++ V +A
Sbjct: 212 SKYGPALSIRVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRA 266
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I GR +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGRPLRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F + E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|417402525|gb|JAA48108.1| Putative polypyrimidine tract-binding protein puf60 rrm superfamily
[Desmodus rotundus]
Length = 541
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 172 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 224
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 225 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 284
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 197 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 256
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 257 EKAQSSQDAVSSMNLFDLGGQYLRVG 282
>gi|190345927|gb|EDK37898.2| hypothetical protein PGUG_01996 [Meyerozyma guilliermondii ATCC
6260]
Length = 397
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GNIP+ ++ L ++ + + ++++DK +AFV T EDA +V+
Sbjct: 80 LYVGNIPKTVNEQYLHELFDK---TKSVKLLHDK-NKPGFNYAFVEFDTREDAESVLTAF 135
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG+E+GG IK+N Q + + + Y ++VG+L+ V E L K F
Sbjct: 136 NGSEVGGSSIKINWA----YQSSTISTSSSPESPL---YTIFVGDLSAEVDDETLGKAFD 188
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ A V+ TS+S G+GFV+F+ +AE A+ ++ S + G+ IR N A
Sbjct: 189 QFPSRKQAHVMWDMQTSRSRGYGFVSFADPAEAENALVTMPGSFIGGRAIRCNWA 243
>gi|444722723|gb|ELW63400.1| Poly(U)-binding-splicing factor PUF60 [Tupaia chinensis]
Length = 577
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 149 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 208
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 209 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 261
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 262 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 321
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 234 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 293
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 294 EKAQSSQDAVSSMNLFDLGGQYLRVG 319
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + ++G +V+ D +G+S+ F FV + EDAN ++ +
Sbjct: 193 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG ++ G+ + V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEEGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T + A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R KV + + + L A+ F + VY+ N + + E LK+ FS
Sbjct: 159 NGMLLNDR--KVFVGRFKCRREREAELGAKAKEFTN----VYIKNFGEDMDDERLKETFS 212
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P + KS GFGFV+F EDA A+ +N + G+ + V +A
Sbjct: 213 KYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRA 266
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ ++ GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>gi|257196183|ref|NP_082640.2| poly(U)-binding-splicing factor PUF60 isoform a [Mus musculus]
gi|158563798|sp|Q3UEB3.2|PUF60_MOUSE RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor
gi|158563997|sp|Q9WV25.2|PUF60_RAT RecName: Full=Poly(U)-binding-splicing factor PUF60; AltName:
Full=60 kDa poly(U)-binding-splicing factor; AltName:
Full=RNA-binding protein Siah-BP; AltName:
Full=Siah-binding protein 1
gi|148697573|gb|EDL29520.1| RIKEN cDNA 2410104I19, isoform CRA_a [Mus musculus]
gi|149066142|gb|EDM16015.1| siah binding protein 1; FBP interacting repressor; pyrimidine tract
binding splicing factor; Ro ribonucleoprotein-binding
protein 1, isoform CRA_a [Rattus norvegicus]
Length = 564
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 195 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 247
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 248 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 220 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 279
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 280 EKAQSSQDAVSSMNLFDLGGQYLRVG 305
>gi|297300235|ref|XP_001087851.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 5 [Macaca
mulatta]
Length = 542
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 173 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 225
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 226 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 285
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 198 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 257
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 258 EKAQSSQDAVSSMNLFDLGGQYLRVG 283
>gi|402794118|ref|NP_001258025.1| poly(U)-binding-splicing factor PUF60 isoform d [Homo sapiens]
gi|119602600|gb|EAW82194.1| fuse-binding protein-interacting repressor, isoform CRA_k [Homo
sapiens]
Length = 541
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 172 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 224
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 225 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 284
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 197 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 256
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 257 EKAQSSQDAVSSMNLFDLGGQYLRVG 282
>gi|440635298|gb|ELR05217.1| hypothetical protein GMDG_01655 [Geomyces destructans 20631-21]
Length = 503
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 15/186 (8%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF--AFVMMKTVE 134
P R +Y+G + + D L +I + G V+ ++I DK G S+ F FV
Sbjct: 84 PEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNVGASKGFNYGFVEYDDPG 143
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKT 192
A ++ LNG + EI+VN Q+ SN D+ + ++VG+L+
Sbjct: 144 AAERAMQTLNGRRVHQAEIRVNWA-----------YQSNTSNKEDTSNHFHIFVGDLSNE 192
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
V E+L + F G V A+V+ T +S G+GFV F +DAE A+SS++ L +
Sbjct: 193 VNDEVLLQAFCAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSMDGEWLGSRA 252
Query: 253 IRVNKA 258
IR N A
Sbjct: 253 IRCNWA 258
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 34/214 (15%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
S++S+ DT + F +++G++ ++++ L + G+V +A V++D TGRSR + F
Sbjct: 170 SNTSNKEDTSNHF--HIFVGDLSNEVNDEVLLQAFCAFGSVSEARVMWDMKTGRSRGYGF 227
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEK---PLVQVDLSLL-------------- 170
V + +DA + ++G +G R I+ N + P + S++
Sbjct: 228 VAFRERQDAEKALSSMDGEWLGSRAIRCNWANQKGQPSISQQQSMVSTGLTPTTPFGHHH 287
Query: 171 ------QAEDSNFVDSPY---KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK 221
Q+ D +P VYVGNL T L F G V+ +
Sbjct: 288 FPTHGVQSYDMIVQQTPQWQTTVYVGNLTPYTTQNDLVPLFQNFGYVVETRF------QS 341
Query: 222 SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
GF FV + E+A AI L+ + G+ ++
Sbjct: 342 DRGFAFVKMDTHENAAMAICQLSGYNVNGRPLKC 375
>gi|440911935|gb|ELR61552.1| Poly(U)-binding-splicing factor PUF60, partial [Bos grunniens
mutus]
Length = 561
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 125 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 184
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 185 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 237
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 238 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 297
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 210 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 269
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 270 EKAQSSQDAVSSMNLFDLGGQYLRVG 295
>gi|126273033|ref|XP_001367857.1| PREDICTED: nucleolysin TIAR isoform 1 [Monodelphis domestica]
Length = 388
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 101 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 158
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + L+ ED SP
Sbjct: 159 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENSTKQLRFEDVVNQSSP 218
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 219 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 272
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 273 IVSVNGTTIEGHVVKC 288
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFA 126
R +Y+GN+ R++ + ++ + G + ++I ++ R + +
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 67
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 117
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 118 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 177
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 178 WLGGRQIRTNWA 189
>gi|393248198|gb|EJD55705.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 426
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 11/177 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIE 141
+Y+GN+ + LT+I G V+ ++I D+ Y + FV + A ++
Sbjct: 7 HLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMRAAETALQ 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I EI+VN + +++ + + V+VG+L+ V+ E+L K
Sbjct: 67 TLNGRKIFDTEIRVNWAYQ----------GSQNKEDTSNHFHVFVGDLSPEVSDEVLGKA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS G + A+V+ + KS G+GF+ F + DAE AI+++N L + IRVN A
Sbjct: 117 FSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWA 173
>gi|332831344|ref|XP_003312009.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Pan
troglodytes]
Length = 542
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 173 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 225
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 226 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 285
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 198 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 257
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 258 EKAQSSQDAVSSMNLFDLGGQYLRVG 283
>gi|380810660|gb|AFE77205.1| poly(U)-binding-splicing factor PUF60 isoform b [Macaca mulatta]
gi|383416605|gb|AFH31516.1| poly(U)-binding-splicing factor PUF60 isoform b [Macaca mulatta]
Length = 543
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 174 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 226
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 227 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 286
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 199 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 258
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 259 EKAQSSQDAVSSMNLFDLGGQYLRVG 284
>gi|17298690|ref|NP_055096.2| poly(U)-binding-splicing factor PUF60 isoform b [Homo sapiens]
gi|397497390|ref|XP_003819494.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Pan
paniscus]
gi|402879354|ref|XP_003903308.1| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 2 [Papio
anubis]
gi|441648302|ref|XP_004090874.1| PREDICTED: poly(U)-binding-splicing factor PUF60 [Nomascus
leucogenys]
gi|17152040|gb|AAF27522.2|AF217197_1 FBP-interacting repressor [Homo sapiens]
gi|14250810|gb|AAH08875.1| Poly-U binding splicing factor 60KDa [Homo sapiens]
gi|119602594|gb|EAW82188.1| fuse-binding protein-interacting repressor, isoform CRA_e [Homo
sapiens]
gi|410220382|gb|JAA07410.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
gi|410303416|gb|JAA30308.1| poly-U binding splicing factor 60KDa [Pan troglodytes]
Length = 542
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 113 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 172
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 173 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 225
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 226 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 285
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 198 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 257
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 258 EKAQSSQDAVSSMNLFDLGGQYLRVG 283
>gi|393217699|gb|EJD03188.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 142
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 54/76 (71%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL+ T + L+K FS+ GQV+ + V+R T +S GFGFVTFSSE +A AIS+
Sbjct: 4 KVYVGNLSWNTTDDTLRKAFSDYGQVVDSIVMRDRDTGRSRGFGFVTFSSETEATGAISA 63
Query: 243 LNNSLLEGQRIRVNKA 258
LN EG+RI+VN A
Sbjct: 64 LNEQEFEGRRIKVNFA 79
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ N +D L K ++G V + V+ D+ TGRSR F FV + +A I
Sbjct: 4 KVYVGNLSWNTTDDTLRKAFSDYGQVVDSIVMRDRDTGRSRGFGFVTFSSETEATGAISA 63
Query: 143 LNGTEIGGREIKVNI 157
LN E GR IKVN
Sbjct: 64 LNEQEFEGRRIKVNF 78
>gi|300798352|ref|NP_001178809.1| poly(U)-binding-splicing factor PUF60 [Rattus norvegicus]
Length = 563
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 134 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 193
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 194 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 246
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 247 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 306
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 219 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 278
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 279 EKAQSSQDAVSSMNLFDLGGQYLRVG 304
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|335310331|ref|XP_003361983.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Sus scrofa]
Length = 362
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 73
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 74 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 126
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 127 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 186
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 99 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 158
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + +N ++GG+ ++V P
Sbjct: 159 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 189
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D+Y G S+ + FV +T E A I+ +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHV 206
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + E KV + + S + +NF + +YV N+ + VT E + F
Sbjct: 207 NGMLL--NEKKVFVGHHIAKKDRQSKFEEMKANFTN----IYVKNVEQDVTDEEFRGLFE 260
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G++ SA + R T KS GFGFV FS E A AA+ +LN L+GQ++ V +A
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRA 315
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +++ ++E + +++G + A + D TG+SR F FV E A+A +E L
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N E+ G+++ V +K + + Q E + S Y+ +Y+ NL+ + E L+
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 200 KCFSEKGQVLSAKVLR 215
+ FS G + SAKV+R
Sbjct: 361 ELFSSYGNITSAKVMR 376
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 120 NYTLIKGRPCRI 131
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 238 VYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDE-SGKSKGFGFVSFERHEDARKAVDEM 296
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+
Sbjct: 297 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 356
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 357 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 403
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 146 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 203
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 204 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 256
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA A+ +N L G++I V +A
Sbjct: 257 GKFGPALSVKVV-TDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRA 311
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 341 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 398
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 399 NGRIVATKPLYVALAQR 415
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 15/183 (8%)
Query: 81 ARR-----VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
ARR VY+ N+ +IDN L ++ E G V +V + G+S+ FV ++ +
Sbjct: 95 ARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVATFE-DGKSKGHGFVQFESEDS 153
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
AN+ IEKLNG+ +G ++I V V+ +L + D+ + + +YV NL +T
Sbjct: 154 ANSAIEKLNGSIVGDKQIYVG----KFVKKSDRVLPSPDAKYTN----LYVKNLDPGITE 205
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
E+L++ FSE G+++S + R S S GFGFV F + +DA A+ +N + L + + V
Sbjct: 206 ELLQEKFSEFGKIVSVAIARDECGS-SRGFGFVNFENPDDARWAMERMNGTELGSKVLYV 264
Query: 256 NKA 258
+A
Sbjct: 265 GRA 267
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 10/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ I + L + E G + + D+ G SR F FV + +DA +E++
Sbjct: 194 LYVKNLDPGITEELLQEKFSEFGKIVSVAIARDE-CGSSRGFGFVNFENPDDARWAMERM 252
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAED------SNFVDSPYKVYVGNLAKTVTSEM 197
NGTE+G + + V +K + + Q E+ + F S VYV N+ VT E
Sbjct: 253 NGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGS--NVYVKNIDDDVTDEE 310
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
L++ FS+ G + SAK+++ +S GFGFV FSS E+A A+++ + + + + V
Sbjct: 311 LREHFSQCGTITSAKLMK-DDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYV 367
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G + ++ + +L E + V D TGRS + +V + EDA IE
Sbjct: 15 LYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAIETK 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + G+ ++V + + D + N VYV NL++++ + L++ F
Sbjct: 75 NHTPLNGKLMRVMWSHR-----DPDARRNGIGN-------VYVKNLSESIDNVGLQELFG 122
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
E G VLS KV KS G GFV F SE+ A +AI LN S++ ++I V K
Sbjct: 123 EFGTVLSCKVATFE-DGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGK 175
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ NI ++ ++EL + + G + A+++ D GRS+ F FV + E+A+ +
Sbjct: 297 VYVKNIDDDVTDEELREHFSQCGTITSAKLMKDD-KGRSKGFGFVCFSSSEEASKAVNTF 355
Query: 144 NGTEIGGREIKVNITEK 160
+G + + V I ++
Sbjct: 356 HGYMFHRKPLYVAIAQR 372
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 84 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 142
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 143 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 200
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 201 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 249
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 93 IDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152
IDN L G + +V+ D+ S+ + FV +T E A IEK+NG + R+
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 58
Query: 153 IKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSA 211
+ V + + +L E +N VY+ N + + E LK+ F + G LS
Sbjct: 59 VFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELFGKFGPALSV 111
Query: 212 KVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 112 KVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 157
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 187 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 244
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 245 NGRIVATKPLYVALAQR 261
>gi|198425950|ref|XP_002126161.1| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D) [Ciona intestinalis]
Length = 564
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145
I +P+ + ++L + G +E ++I DK TG+S + FV DA I LNG
Sbjct: 92 INYLPQAMTQEDLRNLFSSIGELESCKLIRDKLTGQSLGYGFVNYVKAADAEKAINSLNG 151
Query: 146 TEIGGREIKVNITEK--PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
+ + IKV+ PL+ +D+N +YV L K++T E L++ F
Sbjct: 152 LRMQQKTIKVSFARPSTPLI---------KDAN-------LYVSGLPKSMTQEDLQRIFH 195
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
G+++++++L P T S G GFV F +AE AIS+LN ++ G +
Sbjct: 196 PFGRIITSRILVEPSTGMSRGVGFVRFDKRPEAENAISALNGTIPAGAK 244
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L + +T E L+ FS G++ S K++R T +S G+GFV + DAE AI+SLN +
Sbjct: 95 LPQAMTQEDLRNLFSSIGELESCKLIRDKLTGQSLGYGFVNYVKAADAEKAINSLNGLRM 154
Query: 249 EGQRIRVNKA 258
+ + I+V+ A
Sbjct: 155 QQKTIKVSFA 164
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV 139
F +++ N+ D + L ++ GAV +VI D T + + + FV M E+A
Sbjct: 480 FGICIFVYNLAPETDENILWQLFGPFGAVTSVKVIRDYQTQKCKGYGFVTMTNYEEAFIA 539
Query: 140 IEKLNGTEIGGREIKVNITE 159
+ LNG ++G R ++V++T+
Sbjct: 540 VCSLNGYKLGDRVLQVSLTK 559
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
++V NLA +L + F G V S KV+R T K G+GFVT ++ E+A A+ SL
Sbjct: 484 IFVYNLAPETDENILWQLFGPFGAVTSVKVIRDYQTQKCKGYGFVTMTNYEEAFIAVCSL 543
Query: 244 NNSLLEGQRI 253
N L G R+
Sbjct: 544 NGYKL-GDRV 552
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+++ ++L +I G + + ++ + TG SR FV +A I L
Sbjct: 176 LYVSGLPKSMTQEDLQRIFHPFGRIITSRILVEPSTGMSRGVGFVRFDKRPEAENAISAL 235
Query: 144 NGTEIGGREIKVNI 157
NGT G + V +
Sbjct: 236 NGTIPAGAKDPVTV 249
>gi|449550716|gb|EMD41680.1| hypothetical protein CERSUDRAFT_110250 [Ceriporiopsis subvermispora
B]
Length = 448
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 78 SEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVE 134
+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV +
Sbjct: 8 AEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMR 67
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
A ++ LNG +I EI+VN + ED++ + + V+VG+L+ V
Sbjct: 68 AAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTS---NHFHVFVGDLSPEVN 117
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L K FS G + A+V+ + KS G+GF+ F + DAE AI+++N L + IR
Sbjct: 118 DEVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR 177
Query: 255 VNKA 258
VN A
Sbjct: 178 VNWA 181
>gi|388521331|gb|AFK48727.1| unknown [Lotus japonicus]
Length = 285
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 138/268 (51%), Gaps = 29/268 (10%)
Query: 1 MASISSSSSLILSQQNLIFSKTHFTFQSRQPILQIRFPKLSYSL---HNLKTASIEDS-- 55
MA++ SS S+ Q+ FS H F ++ P F KL SL HNL +S S
Sbjct: 1 MAALESSLSVFAPQR---FSTIHL-FPAKPP----EFVKLHASLSHSHNLLFSSNASSKT 52
Query: 56 ---TTRLFAVAEETASSSSSSVDTPSEFA----RRVYIGNIPRNIDNDELTKIVQEHGAV 108
T+L + +E A +++ + A +++Y+ N+P ++ ++ + + G V
Sbjct: 53 PKPCTQLCSALQEVAEAATEEEPEQDQQATYIKKKLYVFNLPWSMSAADIKDLFGQCGTV 112
Query: 109 EKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE--KPLVQVD 166
E+I K GR + +AFV M + E+A A ++K + E+ GR ++V + + K
Sbjct: 113 TDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPG 171
Query: 167 LSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQV-LSAKVLRVPGTSKSSGF 225
++ V +Y NLA V S L++ F+E + LSA+++ + K++G+
Sbjct: 172 PPSPPPSEARHV-----IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGKTTGY 226
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRI 253
GF+++ ++E+AEAAIS+L+ L G+ +
Sbjct: 227 GFISYLTKEEAEAAISALDGKELMGRSL 254
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K+YV NL ++++ +K F + G V +++R + G+ FVT +S E+A+AA+
Sbjct: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIR-GKDGRGKGYAFVTMASGEEAQAAVDK 145
Query: 243 LNNSLLEGQRIRVNKA 258
+ L G+ +RV A
Sbjct: 146 FDTLELSGRILRVELA 161
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEH-GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+Y N+ + + L + E+ A A +++D +G++ + F+ T E+A A I
Sbjct: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISA 243
Query: 143 LNGTEIGGREIKVNITEKPLVQV----DLSLLQAEDS 175
L+G E+ GR + + I+EK + + D L Q D+
Sbjct: 244 LDGKELMGRSLFLKISEKKVKEAGSEKDEDLDQGHDA 280
>gi|224073594|ref|XP_002304117.1| predicted protein [Populus trichocarpa]
gi|222841549|gb|EEE79096.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 32/213 (15%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S DT F +++G++ + + L + + A V++D+ TGRSR F
Sbjct: 125 AYASGQREDTSGHF--NIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFG 182
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAED 174
FV + +DA + I L G +G R+I+ N K V+L++ +ED
Sbjct: 183 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGAGSNEDKQSSDSKSVVELTIGTSED 242
Query: 175 SNFVDSPYK-----------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSS 223
+++P VYVGNL+ VT +L + F VL A V+ +
Sbjct: 243 G--MEAPNNEAPENNPQYTTVYVGNLSPEVTQPVLHRHF----HVLGAGVIEEVRVQRDK 296
Query: 224 GFGFVTFSSEEDAEAAISSLN-NSLLEGQRIRV 255
GFGFV FS+ +A AI N SLL G++I+
Sbjct: 297 GFGFVRFSTHAEAAVAIQMGNAQSLLCGKQIKC 329
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + L ++ G VE ++I + + + F+ A I
Sbjct: 52 CRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKS----SYGFIHYFDRRAAALAI 107
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG + G+ IKVN + Q ED++ + ++VG+L+ VT L
Sbjct: 108 LSLNGRHLFGQPIKVNWA--------YASGQREDTS---GHFNIFVGDLSPEVTDATLYA 156
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F +++DA++AI+ L L ++IR N A
Sbjct: 157 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 214
>gi|1809248|gb|AAB41656.1| siah binding protein 1 [Homo sapiens]
Length = 541
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 172 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 224
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 225 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 284
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 197 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 256
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 257 EKAQSSQDAVSSMNLFDLGGQYLRVG 282
>gi|76677895|ref|NP_598452.2| poly(U)-binding-splicing factor PUF60 isoform b [Mus musculus]
gi|74195824|dbj|BAE30474.1| unnamed protein product [Mus musculus]
gi|74221976|dbj|BAE40622.1| unnamed protein product [Mus musculus]
gi|148697574|gb|EDL29521.1| RIKEN cDNA 2410104I19, isoform CRA_b [Mus musculus]
gi|149066143|gb|EDM16016.1| siah binding protein 1; FBP interacting repressor; pyrimidine tract
binding splicing factor; Ro ribonucleoprotein-binding
protein 1, isoform CRA_b [Rattus norvegicus]
Length = 547
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 118 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 177
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 178 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 230
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 231 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 290
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 203 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 262
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 263 EKAQSSQDAVSSMNLFDLGGQYLRVG 288
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|297687495|ref|XP_002821248.1| PREDICTED: nucleolysin TIAR isoform 3 [Pongo abelii]
Length = 386
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQKKILPVNH---------FHVFVGDLSPEITTEDIKSA 117
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 118 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 174
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I +++ G + A V+ D TG+S+ + FV DA I
Sbjct: 99 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 158
Query: 143 LNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L+ ED SP VY G +A +T
Sbjct: 159 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 218
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FS+ E A AI S+N + +EG ++
Sbjct: 219 DQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 272
Query: 255 V 255
Sbjct: 273 C 273
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|307178104|gb|EFN66931.1| Nucleolysin TIAR [Camponotus floridanus]
Length = 393
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ ++ D L + + GAV+ ++I + + +AFV + A +
Sbjct: 8 RTLYVGNLDASVSEDLLCALFSQIGAVKGCKIIREP---GNDPYAFVEFTNHQSAATALA 64
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +E+KVN P Q L + SN + ++VG+L+ + ++ LK+
Sbjct: 65 AMNKRSFLDKEMKVNWATSPGNQPKL-----DTSNH----HHIFVGDLSPEIETQTLKEA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F+ G++ + +++R P T KS G+ FV+F + +AEAAI+++N L + IR N
Sbjct: 116 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTN 170
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V T+ + +DT + +++G++ I+ L + G + ++ D T +
Sbjct: 78 VNWATSPGNQPKLDTSNH--HHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLK 135
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDS--NFV 178
S+ +AFV +A A I +NG +G R I+ N T KP + +S N+
Sbjct: 136 SKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTNWSTRKPPPPRSERPRHSNNSKPNYE 195
Query: 179 D-----SPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+ SP VY G +T E++KK FS G + +V K G+ F+ F+
Sbjct: 196 EVYNQSSPTNCTVYCGGFTNGITDELIKKTFSPFGTIQDIRVF------KDKGYAFIKFT 249
Query: 232 SEEDAEAAISSLNNSLLEGQRIRV 255
++E A AI S +N+ + G ++
Sbjct: 250 TKEAATHAIESTHNTEINGSIVKC 273
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 172 AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+E+SN P +YVGNL +V+ ++L FS+ G V K++R PG + FV F+
Sbjct: 2 SEESN----PRTLYVGNLDASVSEDLLCALFSQIGAVKGCKIIREPGNDP---YAFVEFT 54
Query: 232 SEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ + A A++++N + ++VN A
Sbjct: 55 NHQSAATALAAMNKRSFLDKEMKVNWA 81
>gi|148697575|gb|EDL29522.1| RIKEN cDNA 2410104I19, isoform CRA_c [Mus musculus]
Length = 546
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 117 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 176
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 177 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 229
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 230 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 289
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 202 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 261
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 262 EKAQSSQDAVSSMNLFDLGGQYLRVG 287
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D ++L + ++G V+ D +G+SR F FV + EDA ++++
Sbjct: 193 VYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDD-SGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSL---LQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG E+ G+ I V +K + Q +L +D +YV NL + E L+
Sbjct: 252 NGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KEFSPFGTITSAKVMLEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E L+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTN-------VYIKNFGDDMDEEKLRDVF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
++ G +S +V+ + KS GFGFV+F EDA+ A+ +N + G+ I V +A
Sbjct: 212 NKYGNAMSIRVM-TDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRA 266
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 14/174 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + GA+ V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR +++ +++ D SL ++ N +++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGRPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 172
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|26390405|dbj|BAC25892.1| unnamed protein product [Mus musculus]
Length = 358
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 66 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGF 123
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAED 174
V DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 124 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSP 183
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
+N VY G + +T +++++ FS GQ++ +V G+ FV FSS E
Sbjct: 184 NNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSSHE 232
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
A AI S+N + +EG ++
Sbjct: 233 SAAHAIVSVNGTTIEGHVVKC 253
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 106 GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV 165
G + ++I D T + + FV A A + +NG +I G+E+KVN P Q
Sbjct: 14 GPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQ- 70
Query: 166 DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
+ + SN + V+VG+L+ +T+E +K F+ G++ A+V++ T KS G+
Sbjct: 71 -----KKDTSNH----FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 121
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
GFV+F ++ DAE AI + L G++IR N A
Sbjct: 122 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 154
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 245
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 246 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 294
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 94
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 147
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 148 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 202
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 289
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 290 NGRIVATKPLYVALAQR 306
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 208 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 266
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 267 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 324
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 325 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 373
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 116 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 173
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 174 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 226
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 227 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 281
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 311 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 368
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 369 NGRIVATKPLYVALAQR 385
>gi|341903554|gb|EGT59489.1| CBN-TIAR-3 protein [Caenorhabditis brenneri]
Length = 417
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 125/268 (46%), Gaps = 31/268 (11%)
Query: 2 ASISSSSSLILSQQNLIFSKTHFTFQSRQPILQIRFPKLSYSLHNLKTASIEDSTTRLFA 61
AS+ S S + L +L+ S HF L + P LS+S + I ++T
Sbjct: 111 ASLPSLSHIGLPH-SLVCSFAHFR-------LFLTPPPLSFSPQSFSPIDIHSTSTDSHL 162
Query: 62 ----VAEETASSSSSS-------VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK 110
V +E+A S+S +DT F V++G++ +++ ND L Q++G V +
Sbjct: 163 ANAIVLQESAVLHSASEPPMEMRIDTSKHF--HVFVGDLSKDVSNDLLKSTFQKYGEVSE 220
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVD---L 167
A+VI D T +S+ + FV ++A I +NG IG R ++ N + + + L
Sbjct: 221 AKVIRDAQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKL 280
Query: 168 SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGF 227
+ Q +S D+ VYVGN+++ T L+ FS G + +V K+ + F
Sbjct: 281 TFEQVFNSTKADN-TSVYVGNISQQTTDADLRDSFSTYGDIAEVRVF------KTQRYAF 333
Query: 228 VTFSSEEDAEAAISSLNNSLLEGQRIRV 255
V + +E A AI +N + G ++R
Sbjct: 334 VRYDKKECATKAIMEMNGKEMAGNQVRC 361
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 53/77 (68%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+ V+VG+L+K V++++LK F + G+V AKV+R T KS G+GFV+F ++++AE AI+
Sbjct: 192 FHVFVGDLSKDVSNDLLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIA 251
Query: 242 SLNNSLLEGQRIRVNKA 258
+N + + +R N A
Sbjct: 252 GMNGKWIGKRAVRTNWA 268
>gi|297687491|ref|XP_002821246.1| PREDICTED: nucleolysin TIAR isoform 1 [Pongo abelii]
gi|410976205|ref|XP_003994513.1| PREDICTED: nucleolysin TIAR isoform 1 [Felis catus]
Length = 376
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQKKILPVNH---------FHVFVGDLSPEITTEDIKSA 117
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 118 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 174
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I +++ G + A V+ D TG+S+ + FV DA I
Sbjct: 99 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 158
Query: 143 LNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L+ ED SP VY G +A +T
Sbjct: 159 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 218
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FS+ E A AI S+N + +EG ++
Sbjct: 219 DQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 272
Query: 255 V 255
Sbjct: 273 C 273
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 97/178 (54%), Gaps = 10/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VI ++ T RSR + +V + A I+++
Sbjct: 164 IFVGRLSWSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEM 223
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GREI V++ T KP + + F D P + +++GNL+ + +
Sbjct: 224 QGKEIDGREINVDMSTSKPAAGNNDRAKK-----FGDVPSEPSETLFLGNLSFNADRDAI 278
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ FS+ G+++S ++ P T + GFG+V +++ EDA+ A+ L ++ + +R++
Sbjct: 279 SELFSKYGEIISVRIPTHPETEQPKGFGYVQYTNVEDAKKALEGLQGEYIDNRPVRLD 336
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ ++ E LKK F G V+SA+V+ GT +S G+G+V F + AE AI
Sbjct: 161 PATIFVGRLSWSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAI 220
Query: 241 SSLNNSLLEGQRIRVN 256
+ ++G+ I V+
Sbjct: 221 KEMQGKEIDGREINVD 236
>gi|358059025|dbj|GAA95206.1| hypothetical protein E5Q_01862 [Mixia osmundae IAM 14324]
Length = 352
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIE 141
+YIGNI + L ++ G V++ ++I D+ + + FV T++ A ++
Sbjct: 13 HLYIGNISPRVTEYMLQEVFALAGPVQQVKIIPDRTFQHGGLNYGFVEFYTMQGAEQALQ 72
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
L G ++ E+KVN + + ED V + + V+ G+L+ VT ++L+K
Sbjct: 73 TLAGRKLFDTEMKVNWAYQ-------NQTAKED---VTNHFHVFCGDLSPEVTDDILQKT 122
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS G + A+V+ + KS G+GF+ F DAEAAI+++N L + IRVN A
Sbjct: 123 FSAFGSLSDARVMWDMASGKSRGYGFLAFRDRADAEAAINAMNGEWLGSRAIRVNWA 179
>gi|355698276|gb|EHH28824.1| 60 kDa poly(U)-binding-splicing factor [Macaca mulatta]
Length = 568
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 139 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 198
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 199 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 251
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 252 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 311
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 224 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 283
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 284 EKAQSSQDAVSSMNLFDLGGQYLRVG 309
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|50286801|ref|XP_445830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525136|emb|CAG58749.1| unnamed protein product [Candida glabrata]
Length = 425
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 106/198 (53%), Gaps = 10/198 (5%)
Query: 64 EETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
+E SS T E A V++G + +ID++ L + + G V A V+Y++ T RSR
Sbjct: 159 DEEEESSPKKAKTDGEPAT-VFVGRLSWSIDDEWLKQEFEHIGGVVAARVMYERGTDRSR 217
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPY 182
+ +V + A +++++G EI GR I V++ T KP V + + F D P
Sbjct: 218 GYGYVDFEDKSYAEKAVKEMHGKEIDGRPINVDMSTSKPTV----NPREDRQKRFGDIPS 273
Query: 183 K----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
+ +++GNL+ + + + F + G+++S ++ P T + GFG+V ++S +DA+
Sbjct: 274 EPSDTLFLGNLSFNADRDNIYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTSIDDAKK 333
Query: 239 AISSLNNSLLEGQRIRVN 256
A+ +L ++ + +R++
Sbjct: 334 ALEALQGEYIDNRPVRLD 351
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 24/209 (11%)
Query: 58 RLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK 117
R V T S + VDT F V+IG++ +DN L G V A+VI D
Sbjct: 9 REMKVNWATEPGSQAKVDTSKHF--HVFIGDLSPEVDNKALKDAFAPFGEVSDAKVIRDS 66
Query: 118 YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT-----------EKPLVQVD 166
T +S+ + FV E+A IE++NG +G R I+ N KP + D
Sbjct: 67 TTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTDGQQSKPELSYD 126
Query: 167 LSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFG 226
Q N VY+GN+ ++V E L+ F + G+++ ++ K+ GF
Sbjct: 127 DVFNQTGPDN-----TSVYIGNVNQSVNDEDLRAAFDKFGRIVEVRIF------KTQGFA 175
Query: 227 FVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
FV F ++ A AI +N + + GQ ++
Sbjct: 176 FVRFDKKDSACNAIVKMNGTEIGGQTVKC 204
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 151 REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLS 210
RE+KVN +P Q + + + V++G+L+ V ++ LK F+ G+V
Sbjct: 9 REMKVNWATEPGSQAKVDTSKH---------FHVFIGDLSPEVDNKALKDAFAPFGEVSD 59
Query: 211 AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
AKV+R T KS G+GFV++ E+AE AI +N L + IR N A
Sbjct: 60 AKVIRDSTTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 107
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYIGN+ +++++++L + G + + + +++ FAFV + A I K+
Sbjct: 139 VYIGNVNQSVNDEDLRAAFDKFGRIVEVRIF------KTQGFAFVRFDKKDSACNAIVKM 192
Query: 144 NGTEIGGREIKVNITEKP 161
NGTEIGG+ +K + P
Sbjct: 193 NGTEIGGQTVKCSWGRTP 210
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK---VYVGNLAKTVTSEML 198
NG E+ G++I V +K V+ L + + D + Y+ +YV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQK-RVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|395731713|ref|XP_002811971.2| PREDICTED: LOW QUALITY PROTEIN: nucleolysin TIA-1 isoform p40
[Pongo abelii]
Length = 386
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I + T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIME--TAGNDPYCFVEFHDDRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG + G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKKMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>gi|407918628|gb|EKG11897.1| hypothetical protein MPH_10939 [Macrophomina phaseolina MS6]
Length = 519
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 6/201 (2%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A A +T S + + ++ + +++GN+ N+D + L + +E G + ++ D+ TG
Sbjct: 246 AEATQTTKKSKTEQNGDAQGSPNLFVGNLSWNVDEEWLGREFEEFGP-KAVRIVTDRATG 304
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD 179
RS+ F +V +TVE A A + GT++ R + ++ T +P Q + S D
Sbjct: 305 RSKGFGYVEFETVEAATAALNAKKGTDLDNRPLNLDFSTPRPEGQNPRDRASSRASQHGD 364
Query: 180 SPYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235
P + ++VGNL+ T + + + F E G + + P GFG+V FSS E+
Sbjct: 365 VPSRPSDTLFVGNLSFDATPDSVTEIFQEYGTITRVSLPTKPEDGMPKGFGYVGFSSVEE 424
Query: 236 AEAAISSLNNSLLEGQRIRVN 256
A+ A +L + L G+ +R++
Sbjct: 425 AQGAFEALQGAELNGRSMRLD 445
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
PS +Y+G++ ++ L + G + V D T RS +A+V + D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N +++ NL K++ +
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 113 KALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|356547954|ref|XP_003542369.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 410
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 31/212 (14%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +SS DT F +++G++ + + L + + A V++D+ TGRSR F
Sbjct: 118 AYASSQREDTSGHF--NIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFG 175
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFV-------- 178
FV + +DA + I L G +G R+I+ N K D Q+ DS V
Sbjct: 176 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEK--QSSDSKIVVELINGSS 233
Query: 179 ---------DSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSS 223
D+P K VYVGNLA VTS L + F L+A ++ +
Sbjct: 234 EEGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS----LNAGIIEDVRVQRDK 289
Query: 224 GFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
GFGFV +S+ +A AI N +L G+ I+
Sbjct: 290 GFGFVRYSTHAEAALAIQMGNARILFGKPIKC 321
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + + L ++ GA+E ++I + + + FV A I
Sbjct: 45 CRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKS----SYGFVDYFDRSSAAFAI 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG I G+ IKVN + Q ED++ + ++VG+L+ VT L
Sbjct: 101 VTLNGRNIFGQPIKVNWA--------YASSQREDTS---GHFNIFVGDLSPEVTDATLYA 149
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F +++DA++AI+ L L ++IR N A
Sbjct: 150 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 207
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 207 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 264
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 265 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTGMNGRIV 313
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 113
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 114 NGMLLNDRKVSVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 166
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 167 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 221
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + +
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTGM 308
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 309 NGRIVATKPLYVALAQR 325
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +D L + ++G V V+ D GRSR F FV E+A +E L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESL 262
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY----KVYVGNLAKTVTSEMLK 199
G ++G +++ V K + ++ L Q NF+ P +YV NL++++ L+
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREM-LKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLR 321
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ F GQ++SAKV+ +S GFGFV FS+ E+++ A LN L++G+ I V A
Sbjct: 322 EIFGCYGQIVSAKVM-CHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 95/174 (54%), Gaps = 11/174 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ +L + V + + TG+S +A++ + A+ + +L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N +++ G+ +++ +++ DL+ + + F + +YV NL ++TS L++ F
Sbjct: 83 NHSDLKGKAMRIMWSQR-----DLAYRRRTRTGFAN----LYVKNLDSSITSSCLERMFC 133
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS KV+ G SK GFGFV F +E+ A +A S+L+ S++ G+++ V K
Sbjct: 134 PFGSILSCKVVEENGQSK--GFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAK 185
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +I + L ++ G++ +V+ + G+S+ F FV T + A + L
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
+G+ + G+++ V + D A + + + VYV NL +TVT + L FS
Sbjct: 172 HGSMVYGKKLFV----AKFINKDERAAMAGNQDSTN----VYVKNLIETVTDDCLHTLFS 223
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G V S V+R G +S GFGFV F + E+A+ A+ SL L +++ V KA
Sbjct: 224 QYGTVSSVVVMR-DGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 70 SSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVM 129
S + + P+ +Y+ N+ +++ L +I +G + A+V+ + GRS+ F FV
Sbjct: 292 SDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVC 350
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL--SLLQAEDSNFVDSP 181
E++ LNG + G+ I V + E+ ++ QA+ + +P
Sbjct: 351 FSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAP 404
>gi|45198625|ref|NP_985654.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|44984635|gb|AAS53478.1| AFR107Wp [Ashbya gossypii ATCC 10895]
gi|374108884|gb|AEY97790.1| FAFR107Wp [Ashbya gossypii FDAG1]
Length = 396
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 100/179 (55%), Gaps = 11/179 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEH-GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+++G + ++D DE K +H G V A VIY++ T +SR + +V + V A +++
Sbjct: 169 IFVGRLSWSVD-DEWLKTEFDHIGGVVGARVIYERGTDKSRGYGYVDFEDVSYAEKAVKE 227
Query: 143 LNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEM 197
++G EI GR I ++ T KP + + + D+P + +++GNL+ +
Sbjct: 228 MHGKEIDGRAINCDMSTSKPAS----APREDRAKKYGDTPSQPSDTLFLGNLSFNADRDA 283
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L + FS+ G V+S ++ P +++ GFG+V + S E+A+AA+ +L ++ + +R++
Sbjct: 284 LFELFSKHGNVISVRIPTHPESNQPKGFGYVQYGSVEEAQAALDALQGEYIDNRPVRID 342
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ +V E LK F G V+ A+V+ GT KS G+G+V F AE A+
Sbjct: 166 PATIFVGRLSWSVDDEWLKTEFDHIGGVVGARVIYERGTDKSRGYGYVDFEDVSYAEKAV 225
Query: 241 SSLNNSLLEGQRIRVN 256
++ ++G+ I +
Sbjct: 226 KEMHGKEIDGRAINCD 241
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPS+ + +++GN+ N D D L ++ +HG V + + + + F +V +VE
Sbjct: 261 DTPSQPSDTLFLGNLSFNADRDALFELFSKHGNVISVRIPTHPESNQPKGFGYVQYGSVE 320
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A A ++ L G I R ++++ +
Sbjct: 321 EAQAALDALQGEYIDNRPVRIDFS 344
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 128 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 186
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 187 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 244
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 245 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 293
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 36 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 93
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 94 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 146
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 147 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 201
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 231 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 288
Query: 144 NGTEIGGREIKVNITEK 160
NG + + V + ++
Sbjct: 289 NGRIVATKPFYVALAQR 305
>gi|270001539|gb|EEZ97986.1| hypothetical protein TcasGA2_TC000381 [Tribolium castaneum]
Length = 591
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 6/178 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ + +D T + + FAFV + E A +E+
Sbjct: 142 RVYVGSISFELKEDTIRQSFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 201
Query: 143 LNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+NG IGGR IKV + P Q + +Q E + ++YV ++ +T + +K
Sbjct: 202 MNGVMIGGRNIKVVGRPSNMPQAQAVIDEIQEEAKQY----NRIYVASIHPDLTEDDIKS 257
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G ++ K+ + K G+GF+ + + + A AI+S+N L GQ +RV +A
Sbjct: 258 VFEAFGPIIYCKLAQGSSGHKHKGYGFIEYETAQAANEAIASMNLFDLGGQYLRVGRA 315
>gi|193648018|ref|XP_001950341.1| PREDICTED: nucleolysin TIAR-like [Acyrthosiphon pisum]
Length = 388
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 12/175 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ ++ + L + G V +VI + S +AF+ T A +
Sbjct: 8 RTLYVGNLDPSVTEELLCALFTNIGPVNACKVIREP---GSDPYAFLEFDTHSGAATALA 64
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +E+KVN P Q L + SN Y ++VG+L+ + + LK+
Sbjct: 65 AMNGRLFLDKEMKVNWATTPGNQPKL-----DTSNH----YHIFVGDLSPEIETHTLKEA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F+ G++ + +++R P T KS G+ FV+F + DAE AI+S+N L + IR N
Sbjct: 116 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSDAENAINSMNGQWLGSRSIRTN 170
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
+P +YVGNL +VT E+L F+ G V + KV+R PG S + F+ F + A A
Sbjct: 6 NPRTLYVGNLDPSVTEELLCALFTNIGPVNACKVIREPG---SDPYAFLEFDTHSGAATA 62
Query: 240 ISSLNNSLLEGQRIRVNKA 258
++++N L + ++VN A
Sbjct: 63 LAAMNGRLFLDKEMKVNWA 81
>gi|169861389|ref|XP_001837329.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|116502051|gb|EAU84946.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 569
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E S++ + D ++ ++ V++G + N+DND L G +E A V D+ TG+SR
Sbjct: 312 ENGSAAPAGGD--AQQSKAVFVGQLSWNVDNDWLASEFASCGEIESATVQMDRNTGKSRG 369
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK- 183
F +V TVE A +E LNG EI R IKV+I+ P +A+ V SP
Sbjct: 370 FGYVHFTTVEAAQKALE-LNGKEIDNRPIKVDIST-PRNPDAARQKRAQTFGDVTSPPSN 427
Query: 184 -VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG---TSKSSGFGFVTFSSEEDAEAA 239
++VGNL+ + + + F++ G K +R+P + + GFG+V F E A+ A
Sbjct: 428 TLFVGNLSFNTSEDSVWSLFNDYG----VKSVRLPTDRESGRPKGFGYVEFEDVEGAKKA 483
Query: 240 ISSLNNSLLEGQRIRVN 256
+ N + L+G+ IR++
Sbjct: 484 FEANNGADLDGRPIRLD 500
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+ N D + + ++G V+ + D+ +GR + F +V + VE A E
Sbjct: 429 LFVGNLSFNTSEDSVWSLFNDYG-VKSVRLPTDRESGRPKGFGYVEFEDVEGAKKAFEAN 487
Query: 144 NGTEIGGREIKVNITE 159
NG ++ GR I+++ ++
Sbjct: 488 NGADLDGRPIRLDYSQ 503
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + ++GA +V+ D + G+SR F FV + EDA ++ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG ++ G+ I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K F+ G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFTPFGSITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKEWF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ KS GFGFV+F EDA+ A+ +N L G+ I V +A
Sbjct: 212 GQYGAALSVKVM-TDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA 266
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + + DK T RS +A+V + D+
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDS 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|294877868|ref|XP_002768167.1| Nucleolysin TIAR, putative [Perkinsus marinus ATCC 50983]
gi|239870364|gb|EER00885.1| Nucleolysin TIAR, putative [Perkinsus marinus ATCC 50983]
Length = 474
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
++V++G +PR D L + + G VE + V+ D++TGRSR F FV +T E +
Sbjct: 157 KKVFVGGLPREADKPALDEYFSQFGPVEDSVVMMDRFTGRSRGFGFVTFETKEQMLGCVA 216
Query: 142 KLNGTEIGGR-EIKVNITEK-----------------PLVQVDLSLLQAEDSNFVDSPYK 183
+G E++ +I + P D S + + + +P K
Sbjct: 217 AAPHVIMGKTVEVRRSINDDGTSTANERRSAGKGSGAPRSYDDYSSGKGKGGHRDQNPNK 276
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
++VG L + VTS++L+ F + G ++ V+ T +S GFG++T+ AEAAIS+
Sbjct: 277 LFVGGLPREVTSDVLRDFFIQYGNLVDCTVITDRMTGQSRGFGYITYEDLAAAEAAISNS 336
Query: 244 NNSLLEGQRIRV 255
N++++G+ + V
Sbjct: 337 ANNVIDGKWVDV 348
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++G +PR + +D L ++G + VI D+ TG+SR F ++ + + A A I
Sbjct: 276 KLFVGGLPREVTSDVLRDFFIQYGNLVDCTVITDRMTGQSRGFGYITYEDLAAAEAAISN 335
Query: 143 LNGTEIGGREIKVNITEK 160
I G+ + V T +
Sbjct: 336 SANNVIDGKWVDVKHTTR 353
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KV+VG L + L + FS+ G V + V+ T +S GFGFVTF ++E +++
Sbjct: 158 KVFVGGLPREADKPALDEYFSQFGPVEDSVVMMDRFTGRSRGFGFVTFETKEQMLGCVAA 217
Query: 243 LNNSLLEGQRIRVNKA 258
+ ++ G+ + V ++
Sbjct: 218 APHVIM-GKTVEVRRS 232
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A V EK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERVSEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 27/179 (15%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+++L ++ ++G V+ D +G+S+ F FV + EDA ++ +
Sbjct: 180 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQKAVDDM 238
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK--------------VYVGNL 189
NG E+ GR++ V +K + E N + ++ +YV NL
Sbjct: 239 NGKELNGRQVYVGRAQK----------KGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 288
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 289 DDGLDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 345
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 88 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 145
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 146 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTN-------VYIKNFGEDMDDEKLKELF 198
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G LS +V+ + KS GFGFV+F EDA+ A+ +N L G+++ V +A
Sbjct: 199 SKYGPALSIRVM-TDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRA 253
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G +T+ ++ FS G +LS +V R T +S G+ +V F DAE A+ ++N
Sbjct: 3 GTCIQTLPKREAQQDFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 62
Query: 247 LLEGQRIRV 255
+++G+ +R+
Sbjct: 63 VIKGRPLRI 71
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 283 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 340
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 341 NGRIVATKPLYVALAQR 357
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ + L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 156 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 214
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 215 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 272
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 273 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 321
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 64 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 121
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 122 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 174
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 175 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 229
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 259 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 316
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 317 NGRIVATKPLYVALAQR 333
>gi|425781065|gb|EKV19047.1| Nucleolin protein Nsr1, putative [Penicillium digitatum PHI26]
Length = 537
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 7/200 (3%)
Query: 64 EETASSS--SSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
EE A+++ S + + P ++IGN+ N+D + L + E G + ++ D+ TGR
Sbjct: 261 EEPAATAKKSKTEEVPEGAVANLFIGNLSWNVDEEWLQREFSEFGELSGVRIVTDRETGR 320
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ---VDLSLLQAEDSNFV 178
SR F +V + DA +E GT++ GR I ++ D S +A
Sbjct: 321 SRGFGYVEYNSAADAAKAMEAKKGTDLDGRTINLDYAAPRQANTQGADRSQDRARSYGDQ 380
Query: 179 DSPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
SP ++VGNL + T + L + F +G VL ++ T + GFG+V FSS ++A
Sbjct: 381 TSPESDTLFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEA 440
Query: 237 EAAISSLNNSLLEGQRIRVN 256
+AA ++LN LEG+ IR++
Sbjct: 441 KAAHAALNGHELEGRAIRLD 460
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+P + D L ++ G+V + ++ TGR + F +V ++++A A L
Sbjct: 388 LFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAAL 447
Query: 144 NGTEIGGREIKVNIT 158
NG E+ GR I+++ +
Sbjct: 448 NGHELEGRAIRLDFS 462
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+++GNL+ V E L++ FSE G++ +++ T +S GFG+V ++S DA A+ +
Sbjct: 283 LFIGNLSWNVDEEWLQREFSEFGELSGVRIVTDRETGRSRGFGYVEYNSAADAAKAMEAK 342
Query: 244 NNSLLEGQRIRVNKA 258
+ L+G+ I ++ A
Sbjct: 343 KGTDLDGRTINLDYA 357
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + ++EL K E+G + A ++ D G+SR F FV + +DA +E L
Sbjct: 214 VYVKNLSESTTDEELMKFFGEYGTITSAVIMRDA-DGKSRCFGFVNFENPDDAAKAVEGL 272
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEML 198
NG ++ +E V +K + + L + + +S K +Y+ NL T++ E L
Sbjct: 273 NGKKVDDKEWYVGKAQK-KSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKL 331
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
K+ F+E G + S KV+R P T G GFV FS+ E+A A+ +N ++ G+ + V
Sbjct: 332 KEMFAEYGTITSCKVMRDP-TGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYV 387
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ + ID+ L G + ++ D +G S+ + FV + E A I+KL
Sbjct: 123 IFIKNLDKAIDHKALHDTFSSFGLILSCKIATDA-SGLSKGYGFVQFDSEESAQNAIDKL 181
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKK 200
NG I +++ V L+ +D S K VYV NL+++ T E L K
Sbjct: 182 NGMLINDKQVYVG-----------HFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMK 230
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E G + SA ++R KS FGFV F + +DA A+ LN ++ + V KA
Sbjct: 231 FFGEYGTITSAVIMRD-ADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKA 287
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 62 VAEETASSSSSSVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
V+ + +++ + P++F +Y+G++ +N+++ +L + + V V D T
Sbjct: 12 VSAPPPNGVANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTR 71
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS 180
RS + +V +DA ++ LN T + R I++ + + D SL ++ +N
Sbjct: 72 RSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHR-----DPSLRKSGTAN---- 122
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
+++ NL K + + L FS G +LS K+ + S G+GFV F SEE A+ AI
Sbjct: 123 ---IFIKNLDKAIDHKALHDTFSSFGLILSCKIA-TDASGLSKGYGFVQFDSEESAQNAI 178
Query: 241 SSLNNSLLEGQRIRV 255
LN L+ +++ V
Sbjct: 179 DKLNGMLINDKQVYV 193
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ I +++L ++ E+G + +V+ D TG R FV T E+A+ + ++
Sbjct: 317 LYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDP-TGIGRGSGFVAFSTPEEASRALGEM 375
Query: 144 NGTEIGGREIKVNITEK 160
NG I G+ + V + ++
Sbjct: 376 NGKMIAGKPLYVALAQR 392
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLHKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 277
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 278 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 326
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKP 161
Q ++ K+ V+ D+ S+ + FV +T E A IEK+NG + R++ V +
Sbjct: 88 QRDPSLRKSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 145
Query: 162 LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK 221
+ +L E +N VY+ N + + E LK F + G LS KV+ + K
Sbjct: 146 EREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGK 197
Query: 222 SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 198 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 234
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 321
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 322 NGRIVATKPLYVALAQR 338
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 134 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 192
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 193 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 250
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 251 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 299
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 42 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 99
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 100 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 152
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 153 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 207
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 237 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 294
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 295 NGRIVATKPLYVALAQR 311
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D+Y G S+ + FV +T E A I+ +
Sbjct: 164 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHV 222
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + E KV + + S + +NF + +YV N+ + VT E + F
Sbjct: 223 NGMLL--NEKKVFVGHHIAKKDRQSKFEEMKANFTN----IYVKNVEQDVTDEEFRGLFE 276
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G++ SA + R T KS GFGFV FS E A AA+ +LN L+GQ++ V +A
Sbjct: 277 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRA 331
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 63/235 (26%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +++ ++E + +++G + A + D TG+SR F FV E A+A +E L
Sbjct: 257 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 316
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N E+ G+++ V +K + + Q E + S Y+ +Y+ NL+ + E L+
Sbjct: 317 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 376
Query: 200 KCFSEKGQVLSAKVLR-----VP-------------------------GTSKS------- 222
+ FS G + SAKV+R VP G SKS
Sbjct: 377 ELFSSYGNITSAKVMREAIVDVPAETEKDKEADKEKAKKETGDKSEEKGESKSESEDKSK 436
Query: 223 ----------------------SGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
GFGFV FS+ ++A A++ +N ++ G+ + V
Sbjct: 437 SEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYV 491
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 76 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 135
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 136 NYTLIKGRPCRI 147
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 168 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 226
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+
Sbjct: 227 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 286
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 287 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 333
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 76 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 133
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 134 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 186
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 187 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 241
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
ML + FS G +LS +V R T +S G+ +V F DAE A+ ++N +++G+ +R+
Sbjct: 1 MLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 59
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 271 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 328
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 329 NGRIVATKPLYVALAQR 345
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 213 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 271
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 272 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 329
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 330 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 378
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 178
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 179 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 231
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 232 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 286
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 316 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 373
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 374 NGRIVATKPLYVALAQR 390
>gi|158255914|dbj|BAF83928.1| unnamed protein product [Homo sapiens]
Length = 375
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ D E AI + L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDGENAIVHMGGQWLGGRQIRTNWA 173
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 85 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V D I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 143 VSFYNKLDGENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 202
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 256
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 257 IVSVNGTTIEGHVVKC 272
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 67 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 125
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 126 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 183
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 184 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 232
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDS 180
S+ + FV +T E A IEK+NG + R++ V + + +L E +N
Sbjct: 11 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN---- 66
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
VY+ N + + E LK F + G LS KV+ + KS GFGFV+F EDA+ A+
Sbjct: 67 ---VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAV 122
Query: 241 SSLNNSLLEGQRIRVNKA 258
+N L G++I V +A
Sbjct: 123 DEMNGKELNGKQIYVGRA 140
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 170 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 227
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 228 NGRIVATKPLYVALAQR 244
>gi|341882558|gb|EGT38493.1| hypothetical protein CAEBREN_09163 [Caenorhabditis brenneri]
Length = 757
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I I D L K G ++ + +D TG + FAFV + E A E
Sbjct: 103 RIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGHHKTFAFVEYEIPEAALLAQES 162
Query: 143 LNGTEIGGREIKVN---------ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+NG +GGR +KVN P Q + ++Q + + ++VYV ++ +
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKY----FRVYVASVHPDL 218
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
+ L F GQ++ ++ R P GFG++ F++ AI+ +N L GQ +
Sbjct: 219 SESELAGVFEAFGQIIKCQLARTPTGRGHRGFGYIEFNNVTSQNEAIAGMNMFDLGGQYL 278
Query: 254 RVNKA 258
RV K
Sbjct: 279 RVGKC 283
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +D+L I E G + A V+ D G+ + F FV + +DA +E L
Sbjct: 221 VYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDG-EGKPKGFGFVNFENADDAAKAVESL 279
Query: 144 NGTEIGGREIKVNITEKP-------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG +E V +K VQ + SL +A D F S +YV NL +V+ E
Sbjct: 280 NGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAAD-KFQSS--NLYVKNLDDSVSDE 336
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
LK+ F+ G V S KV+R P S G GFV FS+ E+A A+S ++ ++E + + V
Sbjct: 337 KLKELFTPYGTVTSCKVMRDP-NGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLYV 394
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 12/179 (6%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++I N+ ++ID+ L G + +V D +G+S+ + FV +T E A +
Sbjct: 127 AGNIFIKNLDKSIDHKALHDTFSVFGNIISCKVAVDS-SGQSKGYGFVQYETEESAQKAM 185
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY-KVYVGNLAKTVTSEMLK 199
+LNG + +++ V P ++ Q DS + + VYV NLA++ T + LK
Sbjct: 186 GQLNGMLLNDKQVYVG----PFLR-----RQERDSTGNKTIFTNVYVKNLAESTTDDDLK 236
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E G++ SA V++ G K GFGFV F + +DA A+ SLN + + V +A
Sbjct: 237 NIFGEFGKITSAVVMKD-GEGKPKGFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRA 294
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ N+ + +L + G V V D T RS + +V + +DA I++L
Sbjct: 42 LYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQEL 101
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + G+ ++V + + D S+ ++ N +++ NL K++ + L FS
Sbjct: 102 NYIPLNGKPVRVMYSHR-----DPSVRRSGAGN-------IFIKNLDKSIDHKALHDTFS 149
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G ++S KV V + +S G+GFV + +EE A+ A+ LN LL +++ V
Sbjct: 150 VFGNIISCKVA-VDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVG 201
>gi|302694831|ref|XP_003037094.1| hypothetical protein SCHCODRAFT_84062 [Schizophyllum commune H4-8]
gi|300110791|gb|EFJ02192.1| hypothetical protein SCHCODRAFT_84062 [Schizophyllum commune H4-8]
Length = 435
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIE 141
+Y+GN+ + LT+I G V+ ++I D+ Y + FV + A ++
Sbjct: 17 HLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYLDMRAAETALQ 76
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG I EI+VN + ED+ + Y V+VG+L+ V ++L K
Sbjct: 77 TLNGRRIFDTEIRVNWAYQ-------GQQNKEDTT---NHYHVFVGDLSPEVNDDVLAKA 126
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS G + A+V+ + KS G+GF+ F + DAE AI+++N L + IRVN A
Sbjct: 127 FSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRVNWA 183
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
PS +Y+G++ ++ L + G + V D T RS +A+V + D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N +++ NL K++ +
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 113 KALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|302679630|ref|XP_003029497.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune H4-8]
gi|300103187|gb|EFI94594.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune H4-8]
Length = 174
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 55/76 (72%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL+ T + L++ FS GQVL + V+R T +S GFGFVTFSS +AE+AISS
Sbjct: 4 KVYVGNLSWNTTDDTLRQAFSNFGQVLDSIVMRDRETGRSRGFGFVTFSSSGEAESAISS 63
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+RI+VN A
Sbjct: 64 LNEQELDGRRIKVNLA 79
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ N +D L + G V + V+ D+ TGRSR F FV + +A + I
Sbjct: 4 KVYVGNLSWNTTDDTLRQAFSNFGQVLDSIVMRDRETGRSRGFGFVTFSSSGEAESAISS 63
Query: 143 LNGTEIGGREIKVNI 157
LN E+ GR IKVN+
Sbjct: 64 LNEQELDGRRIKVNL 78
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLHKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 238
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 239 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 287
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 87
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 140
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 141 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 195
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 225 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 282
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 283 NGRIVATKPLYVALAQR 299
>gi|5524727|gb|AAD44358.1|AF165892_1 RNA-binding protein SiahBP [Rattus norvegicus]
Length = 565
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 136 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 195
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 196 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 248
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 249 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 308
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 221 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 280
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 281 EKAQSSQDAVSSMNLFDLGGQYLRVG 306
>gi|7446337|pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis elegans
Length = 448
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S +DT F V++G++ +DN +L + Q G V A+VI D T +S+ + FV
Sbjct: 167 SKIDTTRHF--HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYP 224
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK------- 183
E+A IE++NG +G R I+ N T KP Q S + D Y
Sbjct: 225 KREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKS---YDEIYNQTSGDNT 281
Query: 184 -VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
VYVGN+A ++T + +++ F+ G++ ++ ++ G+ FV F +++ A AI
Sbjct: 282 SVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKM------QGYAFVKFDNKDAAAKAIVQ 334
Query: 243 LNNSLLEGQRIRV 255
+NN + GQ +R
Sbjct: 335 MNNQDVGGQLVRC 347
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 49/220 (22%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYD--------------------- 116
S+ R +Y+GN+ + D + + + G+V K +VI+D
Sbjct: 42 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDVSFSLWNKTNLYRKLLLARGI 101
Query: 117 ----------------KYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
TG + +AFV A+ ++ +N + RE+KVN +
Sbjct: 102 GVPGYKCTRRQPIHTDTETGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVE 161
Query: 161 PLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG 218
P + + +D+ + V+VG+L+ V ++ L++ F G V AKV+R
Sbjct: 162 P----------GQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTN 211
Query: 219 TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
T+KS G+GFV++ E+AE AI +N L + IR N A
Sbjct: 212 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 251
>gi|402218978|gb|EJT99053.1| hypothetical protein DACRYDRAFT_24132 [Dacryopinax sp. DJM-731 SS1]
Length = 474
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 76 TPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKT 132
+P++ RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV
Sbjct: 4 SPAQAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYTD 63
Query: 133 VEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
+ A ++ LNG +I EI+VN + ED++ Y V+VG+L+
Sbjct: 64 MRSAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTS---GHYHVFVGDLSPE 113
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
V E+L K F+ + A+V+ + KS G+GF+ F + DAE AI+++N L +
Sbjct: 114 VNDEVLAKAFAAFPTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRA 173
Query: 253 IRVNKA 258
IRVN A
Sbjct: 174 IRVNWA 179
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 238
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 239 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 287
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 87
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 140
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 141 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 195
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 225 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 282
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 283 NGRIVATKPLYVALAQR 299
>gi|255641747|gb|ACU21144.1| unknown [Glycine max]
Length = 397
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 31/213 (14%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +SS DT F +++G++ + + L + + A V++D+ TGRSR F
Sbjct: 118 AYASSQREDTSGHF--NIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFG 175
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFV-------- 178
FV + +DA + I L G +G R+I+ N K D Q+ DS V
Sbjct: 176 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEK--QSSDSKIVVELINGSS 233
Query: 179 ---------DSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSS 223
D+P K VYVGNLA VTS L + F L+A ++ +
Sbjct: 234 EEGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHF----HSLNAGIIEDVRVQRDK 289
Query: 224 GFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
GFGFV +S+ +A AI N +L G+ I+ +
Sbjct: 290 GFGFVRYSTHAEAALAIQMGNARILFGKPIKCS 322
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + + L ++ GA+E ++I + + + FV A I
Sbjct: 45 CRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKS----SYGFVDYFDRSSAAFAI 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG I G+ IKVN + Q ED++ + ++VG+L+ VT L
Sbjct: 101 VTLNGRNIFGQPIKVNWA--------YASSQREDTS---GHFNIFVGDLSPEVTDATLYA 149
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F +++DA++AI+ L L ++IR N A
Sbjct: 150 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 207
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 239 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 297
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+
Sbjct: 298 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 357
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 358 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 404
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 147 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 204
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 205 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 257
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 258 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 312
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 87
Query: 144 NGTEIGGREIKV-NI--------TEKPLVQVDLSLLQAEDSNFVDSPY----------KV 184
NG + + NI E+ L ++ +++ + + S +
Sbjct: 88 NGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI 147
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
++ NL K++ ++ L FS G +LS KV V + S G+GFV F ++E AE AI +N
Sbjct: 148 FIKNLDKSIDNKALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMN 205
Query: 245 NSLLEGQRIRVNK 257
LL +++ V +
Sbjct: 206 GMLLNDRKVFVGR 218
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 342 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 399
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 400 NGRIVATKPLYVALAQR 416
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 197 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 255
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 256 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 313
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 314 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 362
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 105 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 162
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 163 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 215
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 216 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 270
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + + DK T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+E LN I GR +++ +++ D SL ++ V + +++ NL K++ ++
Sbjct: 66 KRALETLNFDVIKGRPVRIMWSQR-----DPSLRKSGVGGGVGN---IFIKNLDKSIDNK 117
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 118 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 175
Query: 257 K 257
+
Sbjct: 176 R 176
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 300 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 357
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 358 NGRIVATKPLYVALAQR 374
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 129 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 245
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 246 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 294
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 94
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 147
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 148 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 202
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 289
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 290 NGRIVATKPLYVALAQR 306
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++DN L +I G +V+ D+ GRS+ F FV T EDA ++++
Sbjct: 184 VYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDE-RGRSKGFGFVSYATHEDAQRAVDEM 242
Query: 144 NGTEIGGREIKVNITEKP-LVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLK 199
NG E+ GR I V +K Q +L + + Y+ +YV NL T+ E L+
Sbjct: 243 NGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERLR 302
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
FS G + SAKV+ G S+ GFGFV FS+ ++A A++ +N L+
Sbjct: 303 TEFSPFGTITSAKVMMEGGHSR--GFGFVCFSAPDEAAKAVTEMNGKLV 349
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 92 IFVKNLEKSIDNRALFDAFSGFGNILSCKVVSDE--NGSKGYGFVHFETQESAEKAIEKM 149
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + ++ V + + +++L E +N VY+ N + + + L + F
Sbjct: 150 NGIVLKSLKVFVGHFKSRKERELELGARAREFTN-------VYIKNFGEDMDNARLGEIF 202
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G+ LS KV+ +S GFGFV++++ EDA+ A+ +N L G+RI V +A
Sbjct: 203 GRFGRALSVKVM-TDERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYVGRA 257
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 14/172 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T S +A+V + DA V+E +
Sbjct: 4 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLETM 63
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ +++ +++ D SL ++ N ++V NL K++ + L FS
Sbjct: 64 NLDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLEKSIDNRALFDAFS 111
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV V + S G+GFV F ++E AE AI +N +L+ ++ V
Sbjct: 112 GFGNILSCKV--VSDENGSKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFV 161
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 229 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 287
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 288 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 345
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 346 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 394
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 137 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 194
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 195 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 247
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 248 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 302
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 332 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 389
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 390 NGRIVATKPLYVALAQR 406
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 238
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 239 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 287
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 87
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 140
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 141 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 195
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 225 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 282
Query: 144 NGTEIGGREIKVNITEK 160
NG + + V + ++
Sbjct: 283 NGRIVATKPFYVALAQR 299
>gi|17531963|ref|NP_495120.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
gi|373219011|emb|CCD65016.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
Length = 376
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S +DT F V++G++ +DN +L + Q G V A+VI D T +S+ + FV
Sbjct: 95 SKIDTTRHF--HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYP 152
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK------- 183
E+A IE++NG +G R I+ N T KP Q S + D Y
Sbjct: 153 KREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKS---YDEIYNQTSGDNT 209
Query: 184 -VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
VYVGN+A ++T + +++ F+ G++ ++ ++ G+ FV F +++ A AI
Sbjct: 210 SVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKM------QGYAFVKFDNKDAAAKAIVQ 262
Query: 243 LNNSLLEGQRIRV 255
+NN + GQ +R
Sbjct: 263 MNNQDVGGQLVRC 275
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 49/184 (26%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S+ R +Y+GN+ + D + + + G+V K +VI+D
Sbjct: 42 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------- 80
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQ---VDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
E+KVN +P Q +D + + V+VG+L+ V
Sbjct: 81 --------------EMKVNWAVEPGQQQSKIDTTRH-----------FHVFVGDLSSEVD 115
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
++ L++ F G V AKV+R T+KS G+GFV++ E+AE AI +N L + IR
Sbjct: 116 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 175
Query: 255 VNKA 258
N A
Sbjct: 176 TNWA 179
>gi|392579826|gb|EIW72953.1| hypothetical protein TREMEDRAFT_72942 [Tremella mesenterica DSM
1558]
Length = 475
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 7/196 (3%)
Query: 64 EETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
E A + S D +E VY+G + N+DN+ L Q G V +A V++D +S+
Sbjct: 194 EAQAPAKKSRTDGEAEPTANVYVGGLSWNVDNEWLASEFQSCGEVVEARVMFDHQNQKSK 253
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPY 182
F FV KT E+A + + G EI GR I+ + EK V+ + D +
Sbjct: 254 GFGFVRFKTAEEAAKAV-AMTGHEIDGRAIRCDFAAEKTDNPVERRAQKFNDQRSAPA-A 311
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKG--QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
+Y+G L+ + + + + F + G Q +S R G K GFG+V F+ + A AA+
Sbjct: 312 TLYLGGLSYDLNEDAVYEAFGDFGDIQRVSLPTDRETGAPK--GFGYVEFADVDQATAAL 369
Query: 241 SSLNNSLLEGQRIRVN 256
++N L G+RIRV+
Sbjct: 370 EAMNGKELSGRRIRVD 385
>gi|425783198|gb|EKV21057.1| Nucleolin protein Nsr1, putative [Penicillium digitatum Pd1]
Length = 467
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 7/200 (3%)
Query: 64 EETASSS--SSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
EE A+++ S + + P ++IGN+ N+D + + + E G + ++ D+ TGR
Sbjct: 191 EEPAATAKKSKTEEVPEGAVANLFIGNLSWNVDEEWVQREFSEFGELSGVRIVTDRETGR 250
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ---VDLSLLQAEDSNFV 178
SR F +V + DA +E GT++ GR I ++ D S +A
Sbjct: 251 SRGFGYVEYNSAADAAKAMEAKKGTDLDGRTINLDYAAPRQANTQGADRSQDRARSYGDQ 310
Query: 179 DSPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
SP ++VGNL + T + L + F +G VL ++ T + GFG+V FSS ++A
Sbjct: 311 TSPESDTLFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEA 370
Query: 237 EAAISSLNNSLLEGQRIRVN 256
+AA ++LN LEG+ IR++
Sbjct: 371 KAAHAALNGHELEGRAIRLD 390
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+P + D L ++ G+V + ++ TGR + F +V ++++A A L
Sbjct: 318 LFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAAL 377
Query: 144 NGTEIGGREIKVNI-TEKP 161
NG E+ GR I+++ T +P
Sbjct: 378 NGHELEGRAIRLDFSTPRP 396
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+++GNL+ V E +++ FSE G++ +++ T +S GFG+V ++S DA A+ +
Sbjct: 213 LFIGNLSWNVDEEWVQREFSEFGELSGVRIVTDRETGRSRGFGYVEYNSAADAAKAMEAK 272
Query: 244 NNSLLEGQRIRVNKA 258
+ L+G+ I ++ A
Sbjct: 273 KGTDLDGRTINLDYA 287
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ ++I D L + Q G + +V+ DK + +AFV DA+ ++
Sbjct: 79 RVLYVGNLDKSITEDILKQYFQVAGQIVDVKVMIDKKSNYVN-YAFVEYAKAHDASVALQ 137
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I ++K+N Q++ S DS + ++VG+L + + L +
Sbjct: 138 TLNGIQIENNKVKIN-----------RAFQSQQSTTDDSTFNLFVGDLNIDIDDDTLSRS 186
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + + A V+ T +S G+GFV+F+ +E A+ A+ + L G+ IR+N A
Sbjct: 187 FKDFPSYIQAHVMWDMQTGRSRGYGFVSFADQEQAQKAMEEMQGKELNGRPIRINWA 243
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 41 SYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTK 100
S +L L IE++ ++ A S S S F +++G++ +ID+D L++
Sbjct: 133 SVALQTLNGIQIENNKVKI-----NRAFQSQQSTTDDSTF--NLFVGDLNIDIDDDTLSR 185
Query: 101 IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + +A V++D TGRSR + FV E A +E++ G E+ GR I++N K
Sbjct: 186 SFKDFPSYIQAHVMWDMQTGRSRGYGFVSFADQEQAQKAMEEMQGKELNGRPIRINWATK 245
>gi|398407815|ref|XP_003855373.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
gi|339475257|gb|EGP90349.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
Length = 401
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 10/211 (4%)
Query: 49 TASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAV 108
T + S F + T++ P R +Y+G + + D L +I + G V
Sbjct: 36 TNPLPTSMNSAFEMGSPTSAGGLVRRAAPEPNKRALYVGGLDPRVTEDVLKQIFETTGHV 95
Query: 109 EKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL 167
+ ++I DK + + + FV A ++ LNG + +EI+VN +
Sbjct: 96 QNVKIIPDKNFQSKGFNYGFVEYDDPGAAERAMQTLNGRRVHQQEIRVNWAYQ------S 149
Query: 168 SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGF 227
+ ED++ + + ++VG+L+ V E+L + FS G V A+V+ T +S G+GF
Sbjct: 150 NTTSKEDTS---NHFHIFVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGF 206
Query: 228 VTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
V F DAE A+SS++ L + IR N A
Sbjct: 207 VAFRDRADAEKALSSMDGEWLGSRAIRCNWA 237
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
++ Y+GN+ ++L + Q G V + D R FAF+ M T E+A
Sbjct: 285 QWQTTCYVGNLTPYTTQNDLVPLFQNFGYVTETRFQSD------RGFAFIKMDTHENAAN 338
Query: 139 VIEKLNGTEIGGREIKVNITE--KPLVQVD-LSLLQAEDSNFVDS 180
I +L+G ++ GR +K + + P Q D S Q S F S
Sbjct: 339 AICQLSGYQVNGRPLKCSWGKDRPPTGQFDGFSPAQGPPSGFPQS 383
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|357165665|ref|XP_003580455.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 1
[Brachypodium distachyon]
gi|357165668|ref|XP_003580456.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 2
[Brachypodium distachyon]
Length = 286
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 16/170 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+P + E+ K+ E G V+ +VI K GR R FAFV M + E+A A +EK
Sbjct: 82 LYVANLPWTLPAVEIEKLFAECGVVKDVQVIKMK-DGRKRGFAFVTMGSAEEAAAAVEKF 140
Query: 144 NGTEIGGREIKVNITE---KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
N ++ GR IKV ++ KP S + A +K+YV NLA S +K
Sbjct: 141 NSYDVMGRIIKVEFSKTFRKPAPPRIPSTIFAR--------HKLYVSNLAWKARSSDIKA 192
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS-LLE 249
FS+ + SA V V KS+G+GFV+F ++EDAEAA+S LN LLE
Sbjct: 193 FFSQFNPI-SANV--VFDDKKSAGYGFVSFQTKEDAEAALSELNGKELLE 239
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YV NL T+ + ++K F+E G V +V+++ + GF FVT S E+A AA+
Sbjct: 82 LYVANLPWTLPAVEIEKLFAECGVVKDVQVIKM-KDGRKRGFAFVTMGSAEEAAAAVEKF 140
Query: 244 NNSLLEGQRIRV 255
N+ + G+ I+V
Sbjct: 141 NSYDVMGRIIKV 152
>gi|32564506|ref|NP_871980.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
gi|373219014|emb|CCD65019.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
Length = 295
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S +DT F V++G++ +DN +L + Q G V A+VI D T +S+ + FV
Sbjct: 14 SKIDTTRHF--HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYP 71
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK------- 183
E+A IE++NG +G R I+ N T KP Q S + D Y
Sbjct: 72 KREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKS---YDEIYNQTSGDNT 128
Query: 184 -VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
VYVGN+A ++T + +++ F+ G++ ++ ++ G+ FV F +++ A AI
Sbjct: 129 SVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKM------QGYAFVKFDNKDAAAKAIVQ 181
Query: 243 LNNSLLEGQRIRV 255
+NN + GQ +R
Sbjct: 182 MNNQDVGGQLVRC 194
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+ V+VG+L+ V ++ L++ F G V AKV+R T+KS G+GFV++ E+AE AI
Sbjct: 22 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 81
Query: 242 SLNNSLLEGQRIRVNKA 258
+N L + IR N A
Sbjct: 82 QMNGQWLGRRTIRTNWA 98
>gi|32564504|ref|NP_495123.2| Protein TIAR-1, isoform e [Caenorhabditis elegans]
gi|373219013|emb|CCD65018.1| Protein TIAR-1, isoform e [Caenorhabditis elegans]
Length = 305
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131
S +DT F V++G++ +DN +L + Q G V A+VI D T +S+ + FV
Sbjct: 24 SKIDTTRHF--HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYP 81
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK------- 183
E+A IE++NG +G R I+ N T KP Q S + D Y
Sbjct: 82 KREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKS---YDEIYNQTSGDNT 138
Query: 184 -VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
VYVGN+A ++T + +++ F+ G++ ++ ++ G+ FV F +++ A AI
Sbjct: 139 SVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKM------QGYAFVKFDNKDAAAKAIVQ 191
Query: 243 LNNSLLEGQRIRV 255
+NN + GQ +R
Sbjct: 192 MNNQDVGGQLVRC 204
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 151 REIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLKKCFSEKGQV 208
RE+KVN +P + + +D+ + V+VG+L+ V ++ L++ F G V
Sbjct: 9 REMKVNWAVEP----------GQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDV 58
Query: 209 LSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
AKV+R T+KS G+GFV++ E+AE AI +N L + IR N A
Sbjct: 59 SDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 108
>gi|50308683|ref|XP_454345.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643480|emb|CAG99432.1| KLLA0E08779p [Kluyveromyces lactis]
Length = 475
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P++ID+D L + Q G++ ++I DK + + +AFV DAN + L
Sbjct: 99 LYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNS-QECNYAFVEYFEPHDANVAYQTL 157
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG E+ G+ +K+N Q++ N D + ++VG+L V L F
Sbjct: 158 NGKEVEGKVLKINWA-----------FQSQQVN-SDETFNLFVGDLNVDVDDATLAGTFK 205
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E + A V+ + +S G+GFV+F ++ A+ A+ + L G+ +R+N A
Sbjct: 206 EFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETKQGFELNGRALRINWA 260
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G++ ++D+ L +E + +A V++D +GRSR + FV + A +E
Sbjct: 186 LFVGDLNVDVDDATLAGTFKEFPSFIQAHVMWDMQSGRSRGYGFVSFGEQDQAQVAMETK 245
Query: 144 NGTEIGGREIKVNITEK 160
G E+ GR +++N K
Sbjct: 246 QGFELNGRALRINWASK 262
>gi|355724191|gb|AES08143.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1
[Mustela putorius furo]
Length = 183
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 12/174 (6%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ R++ + ++ + G + ++I + + + FV DA A + +N
Sbjct: 1 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMN 58
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
G +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K F+
Sbjct: 59 GRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSAFAP 108
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 109 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 162
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 74 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 131
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP 161
V DA I + G +GGR+I+ N T KP
Sbjct: 132 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 166
>gi|341895702|gb|EGT51637.1| CBN-RNP-6 protein [Caenorhabditis brenneri]
Length = 757
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I I D L K G ++ + +D TG + FAFV + E A E
Sbjct: 103 RIYVGSISFEIREDMLRKAFDPFGPIKSINMSWDPATGHHKTFAFVEYEIPEAALLAQES 162
Query: 143 LNGTEIGGREIKVN---------ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+NG +GGR +KVN P Q + ++Q + + ++VYV ++ +
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKY----FRVYVASVHPDL 218
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
+ L F GQ++ ++ R P GFG++ F++ AI+ +N L GQ +
Sbjct: 219 SESELAGVFEAFGQIIKCQLARTPTGRGHRGFGYIEFNNVTSQNEAIAGMNMFDLGGQYL 278
Query: 254 RVNKA 258
RV K
Sbjct: 279 RVGKC 283
>gi|289724641|gb|ADD18299.1| poly-U binding splicing factor [Glossina morsitans morsitans]
Length = 611
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + G ++ + +D T + + FAFV + E A +E+
Sbjct: 101 RVYVGSISFELKEDTIRAAFLPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 160
Query: 143 LNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +GGR IKV + P Q + +Q E +F ++YV ++ ++ E +K
Sbjct: 161 MNGALMGGRNIKVGRPSNMPQAQQVIDEIQEEAKSF----NRIYVASIHPDLSEEDIKSV 216
Query: 202 FSEKGQVLSAKVLRVPGTSKSS--GFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G +L K+ PGTS + G+GF+ +++++ + AI+S+N L GQ +RV ++
Sbjct: 217 FEAFGPILYCKL--APGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 273
>gi|50289655|ref|XP_447259.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526568|emb|CAG60192.1| unnamed protein product [Candida glabrata]
Length = 416
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ ++I D L + Q G ++ ++I D +AFV DAN ++
Sbjct: 58 RVLYVGNLDKSITEDLLKQYFQAGGPIQNVKIIED-MKNEYVNYAFVEYIRSHDANVALQ 116
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG ++ + +K+N QA ++ D + ++VG+L V E L
Sbjct: 117 TLNGVQLENKTLKINWA--------FETQQAAEN---DDTFNLFVGDLNVDVDDETLAGT 165
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E + A V+ T +S G+GFV+FS++E+A+ A+ ++ L G++IR+N A
Sbjct: 166 FREFPTFIQAHVMWDMQTGRSRGYGFVSFSNQEEAQKAMDAMQGKDLSGRQIRINWA 222
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 35 IRFPKLSYSLHNLKTASIEDSTTRL-FAVAEETASSSSSSVDTPSEFARRVYIGNIPRNI 93
IR + +L L +E+ T ++ +A + A+ + + + +++G++ ++
Sbjct: 106 IRSHDANVALQTLNGVQLENKTLKINWAFETQQAAENDDTFN--------LFVGDLNVDV 157
Query: 94 DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153
D++ L +E +A V++D TGRSR + FV E+A ++ + G ++ GR+I
Sbjct: 158 DDETLAGTFREFPTFIQAHVMWDMQTGRSRGYGFVSFSNQEEAQKAMDAMQGKDLSGRQI 217
Query: 154 KVNITEK 160
++N K
Sbjct: 218 RINWATK 224
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D+Y G S+ + FV +T E A I+ +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHV 206
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + E KV + + S + +NF + +YV N+ + VT E + F
Sbjct: 207 NGMLL--NEKKVFVGHHIAKKDRQSKFEEMKANFTN----IYVKNVEQDVTDEEFRGLFE 260
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G++ SA + R T KS GFGFV FS E A AA+ +LN L+GQ++ V +A
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRA 315
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 63/235 (26%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +++ ++E + +++G + A + D TG+SR F FV E A+A +E L
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N E+ G+++ V +K + + Q E + S Y+ +Y+ NL+ + E L+
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 200 KCFSEKGQVLSAKVLR-----VP-------------------------GTSKS------- 222
+ FS G + SAKV+R VP G SKS
Sbjct: 361 ELFSSYGNITSAKVMREAIVDVPAETEKDKEADKEKAKKEGGDKSEEKGESKSESEDKSK 420
Query: 223 ----------------------SGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
GFGFV FS+ ++A A++ +N ++ G+ + V
Sbjct: 421 SEEKTEGKTESTKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYV 475
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 120 NYTLIKGRPCRI 131
>gi|409044525|gb|EKM54006.1| hypothetical protein PHACADRAFT_257571 [Phanerochaete carnosa
HHB-10118-sp]
Length = 155
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL+ T + L+ FS+ GQ+L + V+R T +S GFGFVTFSS +A+ AI+S
Sbjct: 4 KVYVGNLSWNTTDDSLRTAFSQFGQILDSIVMRDRDTGRSRGFGFVTFSSANEAQTAITS 63
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+RIRVN A
Sbjct: 64 LNEQELDGRRIRVNLA 79
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ N +D L + G + + V+ D+ TGRSR F FV + +A I
Sbjct: 4 KVYVGNLSWNTTDDSLRTAFSQFGQILDSIVMRDRDTGRSRGFGFVTFSSANEAQTAITS 63
Query: 143 LNGTEIGGREIKVNI 157
LN E+ GR I+VN+
Sbjct: 64 LNEQELDGRRIRVNL 78
>gi|41054740|ref|NP_957426.1| nucleolysin TIAR [Danio rerio]
gi|33416339|gb|AAH55501.1| TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Danio
rerio]
Length = 370
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I D++ G + A V+ D TG+S+ + F
Sbjct: 84 TPSSQKKDTSNHF--HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGF 141
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD-----SP 181
V DA I + G +GGR+I+ N T KP + A+ F + SP
Sbjct: 142 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSP 201
Query: 182 YK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G + +T ++++ FS GQ++ +V G+ F+ FSS E A A
Sbjct: 202 QNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVF------PEKGYSFIRFSSHESAAHA 255
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 256 IVSVNGTTIEGHVVKC 271
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 98/177 (55%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ +Y+GN+ R++ + + ++ + G + ++I + + + + FV DA A +
Sbjct: 8 KTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEHTS--NDPYCFVEFFEHRDAAAALA 65
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T++ ++
Sbjct: 66 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTDDIRAA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 116 FAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 172
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + F++ G S K++ T +S + FV F DA A
Sbjct: 7 PKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMI----TEHTSNDPYCFVEFFEHRDAAA 62
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 63 ALAAMNGRKILGKEVKVNWA 82
>gi|302904116|ref|XP_003049006.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729940|gb|EEU43293.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 474
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + + D L +I + G V+ ++I DK R + FV A
Sbjct: 79 PEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK-NARGYNYGFVEYDDPGAA 137
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
++ LNG + EI+VN Q+ SN D+ + ++VG+L+ V
Sbjct: 138 ERAMQTLNGRRVHQSEIRVNWA-----------YQSNTSNKEDTSNHFHIFVGDLSNEVN 186
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR
Sbjct: 187 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIR 246
Query: 255 VNKA 258
N A
Sbjct: 247 CNWA 250
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 76 TPSEFARRVYIGNI-PRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
TPS + Y+GN+ P ND + + Q G V ++ D R FAF+ M T E
Sbjct: 295 TPS-WQTTCYVGNLTPYTTPND-VVPLFQNFGFVVESRFQAD------RGFAFIKMDTHE 346
Query: 135 DANAVIEKLNGTEIGGREIKV 155
+A I ++NG + GR +K
Sbjct: 347 NAAMAICQMNGYNVNGRPLKC 367
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRVV 358
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++ID L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ +
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDIK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRVVATKPLYVALAQR 370
>gi|17510027|ref|NP_491177.1| Protein RNP-6, isoform a [Caenorhabditis elegans]
gi|373220164|emb|CCD72564.1| Protein RNP-6, isoform a [Caenorhabditis elegans]
Length = 339
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I I D L + G ++ + +D TG + FAFV + E A E
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 143 LNGTEIGGREIKVN---------ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+NG +GGR +KVN P Q + ++Q + + ++VYV ++ +
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKY----FRVYVSSVHPDL 218
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
+ LK F G+++ ++ R P GFG++ F++ AI+ +N L GQ +
Sbjct: 219 SETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYL 278
Query: 254 RVNKA 258
RV K
Sbjct: 279 RVGKC 283
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+++L +I ++G V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHEDAQRAVDEM 178
Query: 144 NGTEIGGREIKVNITEKP---LVQVDLSLLQAEDSNFVD-SPYKVYVGNLAKTVTSEMLK 199
NG E+ G+++ V +K ++ Q + +YV NL + E L+
Sbjct: 179 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 238
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 239 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 285
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 28 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 85
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + ++ E +N VY+ N + + E LK+ F
Sbjct: 86 NGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTN-------VYIKNFGEDMDDEKLKEIF 138
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G LS +V+ + KS GFGFV+F EDA+ A+ +N + G+++ V +A
Sbjct: 139 SKYGPALSIRVM-TDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRA 193
>gi|126273037|ref|XP_001367935.1| PREDICTED: nucleolysin TIAR isoform 3 [Monodelphis domestica]
Length = 385
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 16/186 (8%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 65
Query: 142 KLNGTEIGGREIKVNITEKPLVQ---------VDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
+NG +I G+E+KVN P Q V +++ + +F V+VG+L+
Sbjct: 66 AMNGRKILGKEVKVNWATTPSSQKKDTSSKYIVAITVHLRDQDHF-----HVFVGDLSPE 120
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
+T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++
Sbjct: 121 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 180
Query: 253 IRVNKA 258
IR N A
Sbjct: 181 IRTNWA 186
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I +++ G + A V+ D TG+S+ + FV DA I
Sbjct: 111 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 170
Query: 143 LNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + L+ ED SP VY G +A +T
Sbjct: 171 MGGQWLGGRQIRTNWATRKPPAPKSTQENSTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 230
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FS+ E A AI S+N + +EG ++
Sbjct: 231 DQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 284
Query: 255 V 255
Sbjct: 285 C 285
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 7 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 62
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 63 ALAAMNGRKILGKEVKVNWA 82
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 7/166 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N P D+++L ++ E G ++ A V+ D G+S+ F FV E A A + +
Sbjct: 183 IYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDS-EGKSKGFGFVCYLNPEHAEAAVAAM 241
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+G EIGGR + + ++ +++ L +AE + S +YV NL + E L
Sbjct: 242 HGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERL 301
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
K+ FS+ G + SAKV+ ++S GFGFV F++ E A A++ N
Sbjct: 302 KEIFSKYGPISSAKVM-TDSNNRSKGFGFVCFTNPEQATKAVTEAN 346
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 13/172 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ +I++D+L E G V A V D + +S + +V + +DA +E++
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQM 63
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + GR I++ +++ D SL ++ N +++ NLAKT+ + L FS
Sbjct: 64 NYEVVMGRPIRIMWSQR-----DPSLRKSGLGN-------IFIKNLAKTIEQKELYDTFS 111
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G++LS K+ + S G+GFV F +EE A+ AI +NN + G+ + V
Sbjct: 112 LFGRILSCKIA-MDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYV 162
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ + I+ EL G + ++ D+ G S+ + FV + E A I+K+
Sbjct: 92 IFIKNLAKTIEQKELYDTFSLFGRILSCKIAMDE-NGNSKGYGFVHFENEECAKRAIQKV 150
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKK 200
N I G+ + V + + D + K +YV N E LK+
Sbjct: 151 NNMSICGKVVYVG-----------NFIPRSDRKSQNRKQKFNNIYVKNFPPETDDEKLKE 199
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+E G++ SA V++ KS GFGFV + + E AEAA+++++ + G+ + ++A
Sbjct: 200 MFTEFGEIKSACVMKD-SEGKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYASRA 256
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L +I ++G + A+V+ D RS+ F FV E A + +
Sbjct: 287 LYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDS-NNRSKGFGFVCFTNPEQATKAVTEA 345
Query: 144 NG 145
NG
Sbjct: 346 NG 347
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D+Y G S+ + FV +T E A I+ +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHV 206
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + E KV + + S + +NF + +YV N+ + VT E + F
Sbjct: 207 NGMLL--NEKKVFVGHHIAKKDRQSKFEEMKANFTN----IYVKNVEQDVTDEEFRGLFE 260
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G++ SA + R T KS GFGFV FS E A AA+ +LN L+GQ++ V +A
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRA 315
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +++ ++E + +++G + A + D TG+SR F FV E A+A +E L
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N E+ G+++ V +K + + Q E + S Y+ +Y+ NL+ + E L+
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 200 KCFSEKGQVLSAKVLR 215
+ FS G + SAKV+R
Sbjct: 361 ELFSSYGNITSAKVMR 376
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 120 NYTLIKGRPCRI 131
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 7/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D+Y G S+ + FV +T E A I+ +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHV 206
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + E KV + + S + +NF + +YV N+ + VT E + F
Sbjct: 207 NGMLL--NEKKVFVGHHIAKKDRQSKFEEMKANFTN----IYVKNVEQDVTDEEFRSLFE 260
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G++ SA + R T KS GFGFV FS E A AA+ LN L+GQ++ V +A
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRA 315
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +++ ++E + +++G + A + D TG+SR F FV E A+A +E L
Sbjct: 241 IYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGL 300
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N E+ G+++ V +K + + Q E + S Y+ +Y+ NL+ + E L+
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 200 KCFSEKGQVLSAKVLR 215
+ FS G + SAKV+R
Sbjct: 361 ELFSSYGNITSAKVMR 376
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 120 NYTLIKGRPCRI 131
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ G KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|413921822|gb|AFW61754.1| hypothetical protein ZEAMMB73_478558 [Zea mays]
Length = 131
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPS-EFAR--RVYIGNIPRNIDNDELTKIVQEHGAVEK 110
D + RL V ASS + ++ P +FA R Y+GN+P +D+ L ++ EHG V
Sbjct: 18 DISGRLLNV--NRASSRGTRMERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVD 75
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP 161
A+V+YD+ TGRSR F FV M + E+ N I L+G E+ GR ++VN+ E+P
Sbjct: 76 AKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELDGRPLRVNVAAERP 127
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189
M TVE+A+ IE + +I GR + VN +++ Q + ++ YVGNL
Sbjct: 1 MSTVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERPQRQFAPA------FRAYVGNL 54
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
V L + FSE G+V+ AKV+ T +S GFGFV+ S+E+ AIS+L+ L+
Sbjct: 55 PWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDAISALDGQELD 114
Query: 250 GQRIRVNKA 258
G+ +RVN A
Sbjct: 115 GRPLRVNVA 123
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D+Y G S+ + FV +T E A I+ +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHV 206
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + E KV + + S + +NF + +YV N+ + VT E + F
Sbjct: 207 NGMLL--NEKKVFVGHHIAKKDRQSKFEEMKANFTN----IYVKNVEQDVTDEEFRGLFE 260
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G++ SA + R T KS GFGFV FS E A AA+ +LN L+GQ++ V +A
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRA 315
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 62/234 (26%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +++ ++E + +++G + A + D TG+SR F FV E A+A +E L
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEAL 300
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N E+ G+++ V +K + + Q E + S Y+ +Y+ NL+ + E L+
Sbjct: 301 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 360
Query: 200 KCFSEKGQVLSAKVLR-----VP------------------------GTSKS-------- 222
+ FS G + SAKV+R VP G SKS
Sbjct: 361 ELFSSYGNITSAKVMREAIVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSESEDKSKS 420
Query: 223 ---------------------SGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
GFGFV FS+ ++A A++ +N ++ G+ + V
Sbjct: 421 EEKSEGKTESAKPEKRHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYV 474
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 120 NYTLIKGRPCRI 131
>gi|154288132|ref|XP_001544861.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408502|gb|EDN04043.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 500
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 64 EETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
EE ++ + VD S ++IGN+ N+D + L +E G + ++ D+ +GRSR
Sbjct: 243 EEVSAPKKTKVD--SNEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSR 300
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SP 181
F +V DA E+ GR++ V+ Q+ NF D SP
Sbjct: 301 GFGYVEFTNAADAAKAHAAKKDAELDGRKLNVDFANGRSNAAPKERAQSRAQNFGDQTSP 360
Query: 182 YK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
+++GN+A + M+ + F+E G +L ++ P + + GFG+V FSS ++A +A
Sbjct: 361 ESDTLFIGNIAFSANENMISEAFAEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSA 420
Query: 240 ISSLNNSLLEGQRIRVN 256
+LN + L G+ +R++
Sbjct: 421 FQALNGADLGGRSMRLD 437
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 46/75 (61%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGNI + + + +++ EHG++ + D +GR + F +V +V++A + + L
Sbjct: 365 LFIGNIAFSANENMISEAFAEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSAFQAL 424
Query: 144 NGTEIGGREIKVNIT 158
NG ++GGR ++++ +
Sbjct: 425 NGADLGGRSMRLDFS 439
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 84.0 bits (206), Expect = 6e-14, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 7/176 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 360 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 418
Query: 144 NGTEIGGREIKVNITEKPLV-QVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLK 199
NG E+ G++I V +K + Q +L + + Y+ +YV NL + E L+
Sbjct: 419 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 478
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++ + + V
Sbjct: 479 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 532
Score = 81.3 bits (199), Expect = 4e-13, Method: Composition-based stats.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 268 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 325
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 326 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 378
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 379 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 433
Score = 40.0 bits (92), Expect = 0.98, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 463 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 520
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 521 NGRIVATKPLYVALAQR 537
>gi|317420076|emb|CBN82112.1| Poly(U)-binding-splicing factor PUF60 [Dicentrarchus labrax]
Length = 513
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ ++ + +
Sbjct: 147 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHPDLSDDDI 199
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T + GFGF+ + + A A+SS+N L GQ +RV KA
Sbjct: 200 KSVFEAFGRIKSCTLARDPTTGRHRGFGFIEYEKPQSALDAVSSMNLFDLGGQYLRVGKA 259
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ ++ +D++ + + G ++ + D TGR R F F+
Sbjct: 172 IDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTLARDPTTGRHRGFGFIEY 231
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + A + +N ++GG+ ++V P
Sbjct: 232 EKPQSALDAVSSMNLFDLGGQYLRVGKAVTP 262
>gi|328696967|ref|XP_001951881.2| PREDICTED: poly(U)-binding-splicing factor half pint-like
[Acyrthosiphon pisum]
Length = 603
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 6/178 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ + +D T + + FAFV + E A +E+
Sbjct: 142 RVYVGSISFELKEDSIKQAFSPFGCIKSINMSWDPITQKHKGFAFVEYEIPEAAQLALEQ 201
Query: 143 LNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+NG +GGR IKV + P Q + +Q E + ++YV ++ +T + +K
Sbjct: 202 MNGVMLGGRNIKVVGRPSNMPQAQSVIDEIQEEAKQY----NRIYVASIHPDLTEDDIKS 257
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G + + K+ + ++ G+GF+ + + A AISS+N L GQ +RV +A
Sbjct: 258 VFEAFGPIRTCKLAQGSTPNRHRGYGFIEYEGRQAAIEAISSMNLFDLGGQYLRVGRA 315
>gi|449297589|gb|EMC93607.1| hypothetical protein BAUCODRAFT_76311, partial [Baudoinia
compniacensis UAMH 10762]
Length = 253
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 97/184 (52%), Gaps = 15/184 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + N+D + L + +E G + ++ D+ TG+S+ F FV K+V+ A +E
Sbjct: 3 LFVGGLSWNVDEEWLMREFEEFGELASTRIMTDRETGKSKGFGFVEFKSVDGAIKAVEGK 62
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN----FVDSPYK----VYVGNLAKTVTS 195
G EI GR ++++ TE Q + Q S+ F D P + ++VGN++
Sbjct: 63 QGGEIDGRNVRLDFTEG-RSQNNQRTPQQRSSDRAGKFGDVPKEPSSTLFVGNVSFDANE 121
Query: 196 EMLKKCFSEKGQVLSAKVLRVP---GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
+M+ + FSE G + K +R+P T GFG+V S +DA+ A +L + + G+
Sbjct: 122 DMVTEVFSEYGSI---KAVRLPTDRDTGALKGFGYVEMFSIDDAKVAFEALQGAEIAGRS 178
Query: 253 IRVN 256
IR++
Sbjct: 179 IRLD 182
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D P E + +++GN+ + + D +T++ E+G+++ + D+ TG + F +V M +++
Sbjct: 101 DVPKEPSSTLFVGNVSFDANEDMVTEVFSEYGSIKAVRLPTDRDTGALKGFGYVEMFSID 160
Query: 135 DANAVIEKLNGTEIGGREIKVNI-TEKP 161
DA E L G EI GR I+++ T KP
Sbjct: 161 DAKVAFEALQGAEIAGRSIRLDYSTPKP 188
>gi|422295420|gb|EKU22719.1| splicing factor 3B subunit 4 [Nannochloropsis gaditana CCMP526]
Length = 274
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY G + + D L +++Q G V + DK TG + F FV ++ EDA+ ++ +
Sbjct: 15 VYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + G+ ++VN ++D VD +++GNLA V + L FS
Sbjct: 75 NMVRMYGKPLRVNKA-------------SQDRKTVDVGANLFIGNLAAEVDEKDLYDTFS 121
Query: 204 EKGQVL-SAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G + KV+ P T + GFGFV+F S E A+ AI +N + L G+ I V A
Sbjct: 122 AFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYA 177
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAV-EKAEVIYDKYTGRSRRF 125
AS +VD ++IGN+ +D +L G + + +V++D TG ++ F
Sbjct: 89 ASQDRKTVDV----GANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGF 144
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
FV + E A+ IE +NG +GGR I V K
Sbjct: 145 GFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYK 179
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 9/191 (4%)
Query: 70 SSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVM 129
S S D+ +F V++ N+ + +DE+ + EHG V ++ D G+S+ F F+
Sbjct: 208 SERSSDSEVKFTN-VFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDD-EGKSKGFGFIN 265
Query: 130 MKTVEDANAVIEKLNGTEIGGREIKVNITEK-----PLVQVDLSLLQAEDSNFVDSPYKV 184
+ E A + ++ LNG ++ +E+ V +K +++ L++E +
Sbjct: 266 FEEPEQAASAVQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQG-MNL 324
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
YV NL + E L+ FS+ G + SAKV+ V KS GFGFV ++S E+A A++ +N
Sbjct: 325 YVKNLHDDIDDETLRTEFSQFGTITSAKVM-VDSAGKSRGFGFVCYASPEEATRAVTEMN 383
Query: 245 NSLLEGQRIRV 255
+++G+ I V
Sbjct: 384 GRMIKGKPIYV 394
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV---I 140
+Y+G++ R++ +L ++ + G V V D T RS +A+V +V D A +
Sbjct: 40 LYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERAL 99
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
++LN T + GR +++ + + D + ++ N +++ NL ++V ++ L
Sbjct: 100 DQLNYTPLVGRPMRIMWSHR-----DPAFRKSGVGN-------IFIKNLDRSVDNKALHD 147
Query: 201 CFSEKGQVLSAKVLR-VPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
FS G +LS KV + + G SK G+GFV F +E A AI +N LLEG+++ V
Sbjct: 148 TFSAFGNILSCKVAQDLKGESK--GYGFVHFEKDESARLAIEKVNGMLLEGKKVYVG 202
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ R++DN L G + +V D G S+ + FV + E A IEK+
Sbjct: 131 IFIKNLDRSVDNKALHDTFSAFGNILSCKVAQD-LKGESKGYGFVHFEKDESARLAIEKV 189
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKK 200
NG + G+++ V P L ++E S+ DS K V+V NL + V+ + +K
Sbjct: 190 NGMLLEGKKVYVG----PF------LRRSERSS--DSEVKFTNVFVKNLDEAVSDDEVKA 237
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+E G V S ++R KS GFGF+ F E A +A+ +LN + + + V +A
Sbjct: 238 MFAEHGTVNSCIIMR-DDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRA 294
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L + G + A+V+ D G+SR F FV + E+A + ++
Sbjct: 324 LYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDS-AGKSRGFGFVCYASPEEATRAVTEM 382
Query: 144 NGTEIGGREIKVNITEK 160
NG I G+ I V + ++
Sbjct: 383 NGRMIKGKPIYVALAQR 399
>gi|240278920|gb|EER42426.1| ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325090181|gb|EGC43491.1| ribonucleoprotein [Ajellomyces capsulatus H88]
Length = 472
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ N+D + L +E G + ++ D+ +GRSR F +V DA
Sbjct: 233 LFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSRGFGYVEFTNAADAAKAHAAK 292
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK--VYVGNLAKTVTSEMLK 199
E+ GR++ V+ Q+ NF D SP +++GN+A + M+
Sbjct: 293 KDAELDGRKLNVDFANGRSNAAPKERAQSRAQNFGDQTSPESDTLFIGNIAFSANENMIS 352
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F+E G +L ++ P + + GFG+V FSS ++A +A +LN + L G+ +R++
Sbjct: 353 EAFAEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSAFQALNGADLGGRSMRLD 409
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 46/75 (61%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGNI + + + +++ EHG++ + D +GR + F +V +V++A + + L
Sbjct: 337 LFIGNIAFSANENMISEAFAEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSAFQAL 396
Query: 144 NGTEIGGREIKVNIT 158
NG ++GGR ++++ +
Sbjct: 397 NGADLGGRSMRLDFS 411
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 13/182 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ + +++L I +EHGA+ A V+ D G+S+ F FV + V+DA +E L
Sbjct: 212 IYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDA-DGKSKCFGFVNFENVDDAAKAVEAL 270
Query: 144 NGTEIGGREIKVNITEKP-------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG + +E V +K + + SL E V+ +Y+ NL +V E
Sbjct: 271 NGKKFDDKEWYVGKAQKKSERELELKGRFEQSLESVEKYQAVN----LYIKNLDDSVNDE 326
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
LK+ FS+ G + S KV+ P + S G GFV FS+ E+A A++ LN ++ + + V
Sbjct: 327 KLKELFSDFGTITSCKVMHDP-SGISRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVA 385
Query: 257 KA 258
A
Sbjct: 386 PA 387
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ N+ + +L + + G V V D T RS + +V +DA ++ L
Sbjct: 33 LYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 92
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + + +++ + + D S+ ++ +N +++ NL KT+ + L FS
Sbjct: 93 NFTPLNNKPLRIMYSHR-----DPSIRKSGMAN-------IFIKNLDKTIDHKALHDTFS 140
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + +S G+GFV F SEE A+ AI LN L+ +++ V
Sbjct: 141 SFGNILSCKVA-TDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYV 191
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P +YVG+L VT L F++ GQV+S +V R T +S G+G+V +S+ +DA A+
Sbjct: 30 PTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARAL 89
Query: 241 SSLNNSLLEGQRIRV 255
LN + L + +R+
Sbjct: 90 DVLNFTPLNNKPLRI 104
>gi|388579312|gb|EIM19637.1| hypothetical protein WALSEDRAFT_33897 [Wallemia sebi CBS 633.66]
Length = 423
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 71 SSSVDTPSEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAF 127
S D P RR +Y+GN+ + LT+I G V+ ++I D+ ++ + F
Sbjct: 2 SQPSDNPIFEHRRAHLYVGNLSPRVTEYMLTEIFAVAGHVQSVKIIPDRNFSHGGLNYGF 61
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVG 187
V + A ++ LNG +I EI+VN + + ED+ + + V+VG
Sbjct: 62 VEYTDMRAAETALQTLNGRKIFDTEIRVNWAYQ-------GNNKQEDTT---NHFHVFVG 111
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
+L+ V E+L K FS + A+V+ T KS G+GF++F + DAE AIS++N
Sbjct: 112 DLSPEVNDEILSKAFSGFKSISDARVMWDMNTGKSRGYGFLSFREKTDAEQAISTMNGEW 171
Query: 248 LEGQRIRVNKA 258
L + IRVN A
Sbjct: 172 LGSRAIRVNWA 182
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 25/197 (12%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ ++++ L+K ++ A V++D TG+SR + F+ +
Sbjct: 101 DTTNHF--HVFVGDLSPEVNDEILSKAFSGFKSISDARVMWDMNTGKSRGYGFLSFREKT 158
Query: 135 DANAVIEKLNGTEIGGREIKVNITEK-------------PLVQVDLSLLQAEDSNFVDSP 181
DA I +NG +G R I+VN + P + L E + F +P
Sbjct: 159 DAEQAISTMNGEWLGSRAIRVNWANQKTQTGSHRLNDLMPTMNAFNGPLSYE-AVFQQTP 217
Query: 182 Y---KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
VY+GNL T L F G ++ ++ GF FV S E+A
Sbjct: 218 AYNTTVYIGNLTPYTTQADLVPIFQAFGYIIEVRM------QADRGFAFVKLDSHENASM 271
Query: 239 AISSLNNSLLEGQRIRV 255
AI L +L++G+ I+
Sbjct: 272 AIVQLQGTLIQGRPIKC 288
>gi|297850132|ref|XP_002892947.1| hypothetical protein ARALYDRAFT_889143 [Arabidopsis lyrata subsp.
lyrata]
gi|297338789|gb|EFH69206.1| hypothetical protein ARALYDRAFT_889143 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + L ++ G VE ++I + + + FV A I
Sbjct: 53 CRSVYVGNIHIQVTEPLLQEVFASTGPVESCKLIRKEKS----SYGFVHYFDRRSAGLAI 108
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG + G+ IKVN + Q ED++ S + ++VG+L+ VT ML
Sbjct: 109 LSLNGRHLFGQPIKVNWA--------YASGQREDTS---SHFNIFVGDLSPEVTDAMLFN 157
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F +++DA+ AI + L ++IR N A
Sbjct: 158 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 28/211 (13%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S DT S F +++G++ + + L + + A V++D+ TGRSR F
Sbjct: 126 AYASGQREDTSSHF--NIFVGDLSPEVTDAMLFNCFSVYPSCSDARVMWDQKTGRSRGFG 183
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAED 174
FV + +DA I+++ G +G R+I+ N K V+L+ +ED
Sbjct: 184 FVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSED 243
Query: 175 SNFV---DSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
++P VYVGNLA V+ L + F L A V+ + GF
Sbjct: 244 GKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHF----HSLGAGVIEEVRVQRDKGF 299
Query: 226 GFVTFSSEEDAEAAISSLN-NSLLEGQRIRV 255
GFV +S+ +A AIS N +S L G++++
Sbjct: 300 GFVRYSTHVEAALAISMGNTHSYLSGRQMKC 330
>gi|255726450|ref|XP_002548151.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134075|gb|EER33630.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 472
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 8/196 (4%)
Query: 64 EETASSSSSSVDTPSEFARRV-YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
EE++ + +S+ + E + + Y+GN+P++ + + + G K + +
Sbjct: 63 EESSLTPASATEGGREISNTILYVGNLPKSASEEMVKDLFSVGGNPIKTIKLLNDKNKAG 122
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY 182
+AF+ + + A+ + LNG I EIKVN + S L +E+ F
Sbjct: 123 FNYAFIEYDSNDTADMALNTLNGRVIDESEIKVNWAYQSAAIA--STLNSEEPLF----- 175
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
++VG+L+ V E L+ FS+ G + A V+ TS+S G+GFVTFS + DAE A+ +
Sbjct: 176 NIFVGDLSPEVNDEGLRNAFSKFGSLKQAHVMWDMQTSRSRGYGFVTFSEQADAELALQT 235
Query: 243 LNNSLLEGQRIRVNKA 258
+N L G+ IR N A
Sbjct: 236 MNGEWLGGRAIRCNWA 251
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 22/182 (12%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEV-IYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R+ NIP + DE+ + + HG+V E+ +Y ++R AFV M + E+A A +
Sbjct: 72 RLVAQNIPWDCTADEMRALFESHGSVVGVELSMYS--ANKNRGLAFVTMGSEEEALAALT 129
Query: 142 KLNGTEIGGREIKVNIT-------EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
LN T + R+IKV+ ++P V D + Y V+VGNL V
Sbjct: 130 HLNSTILNDRKIKVDFARPRKKQPKQPAVVSDAT-----------EKYVVFVGNLTWRVR 178
Query: 195 SEMLKKCFSEKGQVLSAKVL-RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
+ L++ F+ V+SA+V+ +S+G+ FV+FSS+E A AAIS+ N +L G+ I
Sbjct: 179 NRHLRELFASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPI 238
Query: 254 RV 255
V
Sbjct: 239 NV 240
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
N+ T++ ++ F G V+ + L + +K+ G FVT SEE+A AA++ LN+++
Sbjct: 77 NIPWDCTADEMRALFESHGSVVGVE-LSMYSANKNRGLAFVTMGSEEEALAALTHLNSTI 135
Query: 248 LEGQRIRVNKA 258
L ++I+V+ A
Sbjct: 136 LNDRKIKVDFA 146
>gi|308321266|gb|ADO27785.1| nucleolysin tiar [Ictalurus furcatus]
Length = 374
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I D++ G + A V+ D TG+S+ + F
Sbjct: 84 TPSSQKKDTSNHF--HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGF 141
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLS-----LLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + L+ ED SP
Sbjct: 142 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKNTQDASPKQLRYEDVVNQSSP 201
Query: 182 YK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G + ++ ++++ FS GQ++ +V G+ F+ FSS E A A
Sbjct: 202 QNCTVYCGGIQSGLSDHLMRQTFSPFGQIMEIRVF------PEKGYSFIRFSSHESAAHA 255
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 256 IVSVNGTTIEGHIVKC 271
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 98/177 (55%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ +Y+GN+ R++ + + ++ + G + ++I + + + + FV DA A +
Sbjct: 8 KTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 65
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T++ ++
Sbjct: 66 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTDDIRAA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 116 FAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 172
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + F++ G S K++ T +S + FV F DA A
Sbjct: 7 PKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 62
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 63 ALAAMNGRKILGKEVKVNWA 82
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 12/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L + G V +V D G+S+ + F+ + EDA + I +L
Sbjct: 123 VFIKNLDTKIDNKALYETFASFGPVLSCKVAVDN-NGQSKGYGFIQFENEEDAQSAINRL 181
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDS-NFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + RE+ V P V+ L ++A S F + VYV NL++T + E LKK F
Sbjct: 182 NGMLVNDREVYVG----PFVR-RLERIEANGSPKFTN----VYVKNLSETTSDEDLKKIF 232
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G + SA V++ KS GFGFV F S + A AA+ LN + V +A
Sbjct: 233 SSYGAITSAIVMKD-QNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGRA 287
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ +++L KI +GA+ A V+ D+ G+SR F FV ++ + A A +EKL
Sbjct: 214 VYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQ-NGKSRGFGFVNFQSPDSAAAAVEKL 272
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVD-SPYKVYVGNLAKTVTSEMLK 199
NG + V ++ ++ Q +S + +Y+ NL T+ E LK
Sbjct: 273 NGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLK 332
Query: 200 KCFSEKGQVLSAKV-LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ FSE G + S KV L G SK S GFV FS+ E+A A+S +N ++
Sbjct: 333 ELFSEFGSITSCKVMLDQQGLSKGS--GFVAFSTPEEASRALSEMNGKMI 380
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+G++ N+ +L + + V V D+ S +A+V +DA +E
Sbjct: 33 RSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAME 92
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LN T + G+ I++ + + D + ++ +N V++ NL + ++ L +
Sbjct: 93 VLNFTPLNGKPIRIMFSHR-----DPTTRRSGHAN-------VFIKNLDTKIDNKALYET 140
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+ G VLS KV V +S G+GF+ F +EEDA++AI+ LN L+ + + V
Sbjct: 141 FASFGPVLSCKVA-VDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYV 193
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A +Y+ N+ ID + L ++ E G++ +V+ D+ G S+ FV T E+A+ +
Sbjct: 314 AANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQ-QGLSKGSGFVAFSTPEEASRAL 372
Query: 141 EKLNGTEIGGREIKVNITEK 160
++NG IG + + V I ++
Sbjct: 373 SEMNGKMIGKKPLYVAIAQR 392
>gi|28302297|gb|AAH46684.1| LOC398498 protein, partial [Xenopus laevis]
Length = 531
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 32/178 (17%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE ++++GNI E+T + + +GAV V+ R++AFV M+ +A
Sbjct: 64 SEERMKIFVGNIDERTSEGEVTALFERYGAVLNCAVM--------RQYAFVHMRGTREAT 115
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+E+LNG E+ G+++ V ++ KP Q + +K++VGN++ + +
Sbjct: 116 KAVEELNGRELNGKKMLVELS-KPRPQ---------------NTWKIFVGNVSSSCEAAE 159
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++K F E G+VL +++ + FV + E +A AAI +LN ++G+RI V
Sbjct: 160 IRKIFEEYGRVLECDIVK--------DYAFVHMTRESEARAAIEALNGKDIKGKRINV 209
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + + E+ KI +E+G V + +++ D +AFV M +A A IE
Sbjct: 145 KIFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKD--------YAFVHMTRESEARAAIEA 196
Query: 143 LNGTEIGGREIKVNITEK 160
LNG +I G+ I V ++ K
Sbjct: 197 LNGKDIKGKRINVEMSNK 214
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ N+D L + + G ++ +V+ D G+SR F FV + E+A ++ +
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ G+ + V +K ++ ++ E N +YV NL ++ E L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQG-VNLYVKNLDDSINDERL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K+ FS G + SAKV+ +S S GFGFV FSS E+A A++ +N ++
Sbjct: 311 KEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G++ ++V+Y+++ SR F FV +T E A I +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R KV + Q + L A F + +YV NL V + L+ FS
Sbjct: 159 NGMLLNDR--KVFVGHFKSRQKREAELGARALGFTN----IYVKNLHANVDEQRLQDLFS 212
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G + S KV+R +S GFGFV F E+A+ A+ +N + GQ + V +A
Sbjct: 213 QFGNMQSVKVMR-DSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++GQ IR+
Sbjct: 73 NFEVIKGQPIRI 84
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +I+++ L ++ +G + A+V+ + + S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGTKPLYVALAQR 370
>gi|429863469|gb|ELA37920.1| nuclear and cytoplasmic polyadenylated rna-binding protein pub1
[Colletotrichum gloeosporioides Nara gc5]
Length = 479
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 10/182 (5%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + + D L +I + G V+ ++I DK + + FV A
Sbjct: 81 PEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAA 139
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ LNG + EI+VN Q + S + ++F ++VG+L+ V E
Sbjct: 140 ERAMQTLNGRRVHQSEIRVNWA----YQSNTSSKEDTSNHF-----HIFVGDLSNEVNDE 190
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR N
Sbjct: 191 VLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCN 250
Query: 257 KA 258
A
Sbjct: 251 WA 252
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+ L + G V +V+ D+ G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG E+ G+ I V +K + +++ Q +D +YV NL + E L+
Sbjct: 252 NGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQ 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + S KV+ G SK GFGFV FSS E+A A+S +N ++
Sbjct: 312 KEFSPFGTITSTKVMTEGGRSK--GFGFVCFSSPEEATKAVSEMNGRIV 358
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ + IDN L G + +V+ D+ S+ FV +T E A IEK+
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + L F
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTN-------VYIKNFGDRMDDKTLNGLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
GQVLS KV+ G KS GFGFV+F EDA+ A+ +N L G+ I V A
Sbjct: 212 GRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPA 266
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ V F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + +V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTE--GGRSKGFGFVCFSSPEEATKAVSEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|332029721|gb|EGI69600.1| Nucleolysin TIAR [Acromyrmex echinatior]
Length = 393
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ ++ D L + + GAV+ ++I + + +AFV + A +
Sbjct: 8 RTLYVGNLDTSVSEDLLCALFSQIGAVKGCKIIREP---GNDPYAFVEFTNHQCAATALA 64
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +E+KVN P Q L + SN + ++VG+L+ + ++ LK+
Sbjct: 65 AMNKRSFLDKEMKVNWATSPGNQPKL-----DTSNH----HHIFVGDLSPEIETQTLKEA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F+ G++ + +++R P T KS G+ FV+F + +AEAAI+++N L + IR N
Sbjct: 116 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTN 170
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V T+ + +DT + +++G++ I+ L + G + ++ D T +
Sbjct: 78 VNWATSPGNQPKLDTSNH--HHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLK 135
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDS--NFV 178
S+ +AFV +A A I +NG +G R I+ N T KP + +S N+
Sbjct: 136 SKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTNWSTRKPPPPRSERPRHSNNSKPNYE 195
Query: 179 D-----SPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+ SP VY G +T E++KK FS G + +V K G+ F+ F+
Sbjct: 196 EVYNQSSPTNCTVYCGGFTNGITDELIKKTFSPFGTIQDIRVF------KDKGYAFIKFT 249
Query: 232 SEEDAEAAISSLNNSLLEGQRIRV 255
++E A AI S +N+ + G ++
Sbjct: 250 TKEAATHAIESTHNTEINGSIVKC 273
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 172 AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+E+SN P +YVGNL +V+ ++L FS+ G V K++R PG + FV F+
Sbjct: 2 SEESN----PRTLYVGNLDTSVSEDLLCALFSQIGAVKGCKIIREPGNDP---YAFVEFT 54
Query: 232 SEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ + A A++++N + ++VN A
Sbjct: 55 NHQCAATALAAMNKRSFLDKEMKVNWA 81
>gi|254585491|ref|XP_002498313.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
gi|238941207|emb|CAR29380.1| ZYRO0G07326p [Zygosaccharomyces rouxii]
Length = 468
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 95/178 (53%), Gaps = 9/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + NID+ L + G V+ A VIY++ + RSR + +V A ++++
Sbjct: 238 IFVGRLSWNIDDQWLKNEFEHIGGVQSARVIYERGSTRSRGYGYVDFTDKSYAEKAVKEM 297
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
+G E+ GR I ++ T KP V + + F D P + +++GNL+ + +
Sbjct: 298 HGKELDGRPINCDMSTSKPTV----NPREDRAKRFGDMPSEPSDTLFLGNLSFNADRDQI 353
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ FS G+V+S ++ P T + GFG+V ++S + A+ A+ +L ++ + +R++
Sbjct: 354 YELFSPHGEVISVRIPTHPETEQPKGFGYVQYASVDSAQKALETLQGEYIDNRPVRLD 411
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ + + LK F G V SA+V+ G+++S G+G+V F+ + AE A+
Sbjct: 235 PATIFVGRLSWNIDDQWLKNEFEHIGGVQSARVIYERGSTRSRGYGYVDFTDKSYAEKAV 294
Query: 241 SSLNNSLLEGQRIRVN 256
++ L+G+ I +
Sbjct: 295 KEMHGKELDGRPINCD 310
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D PSE + +++GN+ N D D++ ++ HG V + T + + F +V +V+
Sbjct: 330 DMPSEPSDTLFLGNLSFNADRDQIYELFSPHGEVISVRIPTHPETEQPKGFGYVQYASVD 389
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
A +E L G I R ++++ +
Sbjct: 390 SAQKALETLQGEYIDNRPVRLDFS 413
>gi|422292932|gb|EKU20233.1| splicing factor 3B subunit 4, partial [Nannochloropsis gaditana
CCMP526]
Length = 301
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY G + + D L +++Q G V + DK TG + F FV ++ EDA+ ++ +
Sbjct: 15 VYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIM 74
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + G+ ++VN ++D VD +++GNLA V + L FS
Sbjct: 75 NMVRMYGKPLRVNKA-------------SQDRKTVDVGANLFIGNLAAEVDEKDLYDTFS 121
Query: 204 EKGQVL-SAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G + KV+ P T + GFGFV+F S E A+ AI +N + L G+ I V A
Sbjct: 122 AFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYA 177
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAV-EKAEVIYDKYTGRSRRF 125
AS +VD ++IGN+ +D +L G + + +V++D TG ++ F
Sbjct: 89 ASQDRKTVDV----GANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGF 144
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
FV + E A+ IE +NG +GGR I V K
Sbjct: 145 GFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYK 179
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 9/179 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+ N+D+ L + + G V A VI D+ +GRS+ F +V T E+A +
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK--VYVGNLAKTVTSEMLKK 200
G I GREIKV+ T K D + +A+ SP ++VGNL + +
Sbjct: 301 QGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVGA 360
Query: 201 CFSEKGQVLSAKVLRVPGTSKSS---GFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
FSE V K LR+P +S GFG+VTF+S EDA++A LN + G+ R++
Sbjct: 361 FFSE---VAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLD 416
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
D P ++VGNL+ V ML + F G V SA+V+ + +S GFG+V F++ E+AE
Sbjct: 236 DKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEK 295
Query: 239 AISSLNNSLLEGQRIRVN 256
A + ++G+ I+V+
Sbjct: 296 AHGEKQGAFIDGREIKVD 313
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT S + +++GN+P + D D + E V+ + ++ +GR + F +V +VE
Sbjct: 335 DTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVE 394
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA + E+LNG I GR +++ +
Sbjct: 395 DAKSAFEQLNGQSINGRNCRLDYS 418
>gi|145352790|ref|XP_001420719.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580954|gb|ABO99012.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 161
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS-RRFAFVMMKTVEDANAVI 140
R++Y+G++P N D L + G V+ I D G S + FAF+ TVE A +
Sbjct: 3 RKIYVGHLPNNATADALADAFKSIGGVQDVACIPDAALGYSCKGFAFITFATVEQAKSAA 62
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+NG G R ++V + P + DS D +YVG + +++T E L++
Sbjct: 63 TSMNGALFGDRPMEVRLKTAPREE------PRRDSGSFDPDANLYVGGMTESMTEESLRE 116
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
F+ G V K++R T G+GFV A AAI++L+
Sbjct: 117 IFAPYGLVQKTKLIRDHATQVPKGYGFVQMMDVSHAHAAIAALDG 161
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS---KSSGFGFVTFSSEEDAEAA 239
K+YVG+L T++ L F G V V +P + GF F+TF++ E A++A
Sbjct: 4 KIYVGHLPNNATADALADAFKSIGGV--QDVACIPDAALGYSCKGFAFITFATVEQAKSA 61
Query: 240 ISSLNNSLLEGQRIRV 255
+S+N +L + + V
Sbjct: 62 ATSMNGALFGDRPMEV 77
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 58 RLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK 117
RL E S S D + +Y+G + ++ + L +I +G V+K ++I D
Sbjct: 78 RLKTAPREEPRRDSGSFDPDAN----LYVGGMTESMTEESLREIFAPYGLVQKTKLIRDH 133
Query: 118 YTGRSRRFAFVMMKTVEDANAVIEKLNG 145
T + + FV M V A+A I L+G
Sbjct: 134 ATQVPKGYGFVQMMDVSHAHAAIAALDG 161
>gi|326534302|dbj|BAJ89501.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 447
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GN+ N+ + L ++ Q G VE+ ++I + + F FV A I
Sbjct: 72 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAI 127
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
L+G I G+ IKVN + Q ED++ + ++VG+L+ V L
Sbjct: 128 MTLHGRHIYGQAIKVNWA--------FASTQREDTS---GHFHIFVGDLSSEVNDATLYA 176
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S G+GFV+F ++++AE AI+ + L ++IR N A
Sbjct: 177 CFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWA 234
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A+ A +S+ DT F +++G++ +++ L + + A V++D TG
Sbjct: 139 AIKVNWAFASTQREDTSGHF--HIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTG 196
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ---------------- 164
RSR + FV + ++A I ++ G +G R+I+ N K +
Sbjct: 197 RSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNG 256
Query: 165 --VDLSLLQAEDSNFVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
+ ++ +D+ ++P VYVGNL V + L + F G V + + +RV
Sbjct: 257 GSSNAAMEANQDTGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRV 315
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ GFGF+ +S+ +A AI N ++ G+ I+
Sbjct: 316 ---QQEKGFGFIRYSTHGEAALAIQMANGLVVRGKPIKC 351
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+ ++ DEL + G A+E+ V +K F F+ T +A I+
Sbjct: 284 VYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQEK------GFGFIRYSTHGEAALAIQ 337
Query: 142 KLNGTEIGGREIKVNITEKP 161
NG + G+ IK + KP
Sbjct: 338 MANGLVVRGKPIKCSWGNKP 357
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ N+D L + + G ++ +V+ D G+SR F FV + E+A ++ +
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ G+ + V +K ++ ++ E N +YV NL ++ E L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQG-VNLYVKNLDDSINDERL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K+ FS G + SAKV+ +S S GFGFV FSS E+A A++ +N ++
Sbjct: 311 KEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G++ ++V+Y+++ SR F FV +T E A I +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V + Q + L A F + +YV NL V + L+ FS
Sbjct: 159 NGMLLNDRKVFVGHFKS--RQKREAELGARALGFTN----IYVKNLHANVDEQRLQDLFS 212
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G + S KV+R +S GFGFV F E+A+ A+ +N + GQ + V +A
Sbjct: 213 QFGNMQSVKVMR-DSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++GQ IR+
Sbjct: 73 NFEVIKGQPIRI 84
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +I+++ L ++ +G + A+V+ + + S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGTKPLYVALAQR 370
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ N+D L + + G ++ +V+ D G+SR F FV + E+A ++ +
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ G+ + V +K ++ ++ E N +YV NL ++ E L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQG-VNLYVKNLDDSINDERL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K+ FS G + SAKV+ +S S GFGFV FSS E+A A++ +N ++
Sbjct: 311 KEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G++ ++V+Y+++ SR F FV +T E A I +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V + Q + L A F + +YV NL V + L+ FS
Sbjct: 159 NGMLLNDRKVFVGHFKS--RQKREAELGARALGFTN----IYVKNLHANVDEQRLQDLFS 212
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G + S KV+R +S GFGFV F E+A+ A+ +N + GQ + V +A
Sbjct: 213 QFGNMQSVKVMR-DSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRA 266
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++GQ IR+
Sbjct: 73 NFEVIKGQPIRI 84
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +I+++ L ++ +G + A+V+ + + S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGTKPLYVALAQR 370
>gi|367051094|ref|XP_003655926.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
gi|347003190|gb|AEO69590.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
Length = 500
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + D L +I + G V+ ++I DK R + FV A
Sbjct: 85 PEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDK-NARGYNYGFVEYDDPGAA 143
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
++ LNG + EI+VN Q+ ++N D+ + ++VG+L+ V
Sbjct: 144 ERAMQTLNGRRVHQSEIRVNWA-----------YQSNNANKEDTSNHFHIFVGDLSNEVN 192
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR
Sbjct: 193 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIR 252
Query: 255 VNKA 258
N A
Sbjct: 253 CNWA 256
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
Y+GN+ +++ + Q G V ++ D R FAFV M T E+A I +L
Sbjct: 308 CYVGNLTPYTTQNDIVPLFQNFGFVVESRFQAD------RGFAFVKMDTHENAAMAICQL 361
Query: 144 NGTEIGGREIKV 155
NG + GR +K
Sbjct: 362 NGYNVNGRPLKC 373
>gi|225560173|gb|EEH08455.1| ribonucleoprotein [Ajellomyces capsulatus G186AR]
Length = 470
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 6/197 (3%)
Query: 64 EETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
EE + + VD S ++IGN+ N+D + L +E G + ++ D+ +GRSR
Sbjct: 213 EEVTAPKKTKVD--SNEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSR 270
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SP 181
F +V DA E+ GR++ V+ Q+ NF D SP
Sbjct: 271 GFGYVEFTNAADAAKAHAAKKDAELDGRKLNVDFANGRSNAAPKERAQSRAQNFGDQTSP 330
Query: 182 YK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
+++GN+A + M+ + F+E G +L ++ P + + GFG+V FSS ++A +A
Sbjct: 331 ESDTLFIGNIAFSANENMISEAFAEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSA 390
Query: 240 ISSLNNSLLEGQRIRVN 256
+LN + L G+ +R++
Sbjct: 391 FQALNGADLGGRSMRLD 407
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 46/75 (61%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGNI + + + +++ EHG++ + D +GR + F +V +V++A + + L
Sbjct: 335 LFIGNIAFSANENMISEAFAEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSAFQAL 394
Query: 144 NGTEIGGREIKVNIT 158
NG ++GGR ++++ +
Sbjct: 395 NGADLGGRSMRLDFS 409
>gi|74203983|dbj|BAE28998.1| unnamed protein product [Mus musculus]
Length = 564
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 135 RVYAGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 195 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 247
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 248 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 220 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 279
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 280 EKAQSSQDAVSSMNLFDLGGQYLRVG 305
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+++L +I ++G V+ D +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 144 NGTEIGGREIKVNITEKP---LVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEM 197
NG E+ G+++ V +K ++ Q + Y+ +YV NL + E
Sbjct: 252 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTR--YQGVNLYVKNLDDGLDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + ++ E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTN-------VYIKNFGEDMDDEKLKEIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS +V+ + KS GFGFV+F EDA+ A+ +N + G+++ V +A
Sbjct: 212 CKYGPALSIRVM-TDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRA 266
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A+V + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I GR +++ +++ D SL ++ N +++ NL K++ ++ L FS
Sbjct: 73 NFDVIKGRPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS KV V + S G+GFV F + E AE AI +N LL +++ V +
Sbjct: 121 AFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGR 172
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|325179817|emb|CCA14220.1| RNA binding protein putative [Albugo laibachii Nc14]
Length = 360
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 90/192 (46%), Gaps = 25/192 (13%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
S S D RRVY+GN+ + +L ++ G VE A ++ + GRS+
Sbjct: 56 SDGSEDADMEVVTGRRVYVGNLSWKVKWQDLKDHMRSAGDVEHAVIM--EVGGRSKGCGI 113
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKV------NITEKPLVQVDLSLLQAEDSNFVDSP 181
V T +A IE LN TE+ GR+I V N + +P +
Sbjct: 114 VTYATESEAQNAIETLNDTELDGRKIFVREDREENASAQPRAK----------------G 157
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+VYVGNL TV + LK + G V+ A VL G S G G V FS+ ++A+ AI
Sbjct: 158 CRVYVGNLPWTVKWQALKDHMKQAGTVIHADVLEEAG-GWSKGCGLVEFSTPDEAQNAID 216
Query: 242 SLNNSLLEGQRI 253
LN++ LEG+ I
Sbjct: 217 MLNDTELEGRNI 228
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 92/217 (42%), Gaps = 33/217 (15%)
Query: 64 EETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSR 123
EE AS+ P RVY+GN+P + L +++ G V A+V+ ++ G S+
Sbjct: 146 EENASAQ------PRAKGCRVYVGNLPWTVKWQALKDHMKQAGTVIHADVL-EEAGGWSK 198
Query: 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP---------------------L 162
V T ++A I+ LN TE+ GR I V +P
Sbjct: 199 GCGLVEFSTPDEAQNAIDMLNDTELEGRNIFVREDREPDGGSITSIARRGGRGGRSSGGR 258
Query: 163 VQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG 218
+ + N S +VYVGNL TS L+ F G V A+V+ P
Sbjct: 259 GNSRFAGRGPREGNSGHSHSSDVKQVYVGNLPWDTTSRNLENLFQSAGDVERAEVVEFP- 317
Query: 219 TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+S GFG V F S +A+ AI LN + G+R+ V
Sbjct: 318 DGRSRGFGIVKFKSSSEAQCAIDELNGTEHNGRRLEV 354
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
++VY+GN+P + + L + Q G VE+AEV+ + GRSR F V K+ +A I+
Sbjct: 282 KQVYVGNLPWDTTSRNLENLFQSAGDVERAEVV-EFPDGRSRGFGIVKFKSSSEAQCAID 340
Query: 142 KLNGTEIGGREIKVNITEK 160
+LNGTE GR ++V + ++
Sbjct: 341 ELNGTEHNGRRLEVRLDKR 359
>gi|126133234|ref|XP_001383142.1| hypothetical protein PICST_55837 [Scheffersomyces stipitis CBS
6054]
gi|126094967|gb|ABN65113.1| polyadenylated RNA-binding protein, partial [Scheffersomyces
stipitis CBS 6054]
Length = 453
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 16/179 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G + +++ +D L + G ++ +++ DK +AF+ T + A+ + L
Sbjct: 81 LYVGGLHKSVTDDMLKDLFSVAGGIKSVKILNDK-NKPGFNYAFIEFDTNQAADMALHTL 139
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP----YKVYVGNLAKTVTSEMLK 199
NG I EIK+N Q+ N P + ++VG+L+ V E L
Sbjct: 140 NGRIINNSEIKINWA-----------FQSSTINTAAHPDEPTFNIFVGDLSPEVDDETLT 188
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ FS+ + A V+ TS+S G+GFVTF ++ DAE A+ ++N + G+ IR N A
Sbjct: 189 RAFSKFQTLKQAHVMWDMQTSRSRGYGFVTFGTQADAELALQTMNGEWINGRAIRCNWA 247
>gi|310798412|gb|EFQ33305.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 482
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 10/182 (5%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + + D L +I + G V+ ++I DK + + FV A
Sbjct: 82 PEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAA 140
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ LNG + EI+VN Q + S + ++F ++VG+L+ V E
Sbjct: 141 ERAMQTLNGRRVHQSEIRVNWA----YQSNTSSKEDTSNHF-----HIFVGDLSNEVNDE 191
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR N
Sbjct: 192 ILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCN 251
Query: 257 KA 258
A
Sbjct: 252 WA 253
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 14/182 (7%)
Query: 76 TPSEF-ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
P++F + VY+G++ N+ +L +I + G V V D T RS +A+V + +
Sbjct: 17 APNQFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQ 76
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
DA +E LN T + G+ I++ + + D SL ++ +N +++ NL K +
Sbjct: 77 DATRALELLNFTPVNGKPIRIMFSHR-----DPSLRKSGAAN-------IFIKNLDKAID 124
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
++ L FS G +LS KV + +S G+GFV F EE A++AI +N LL +++
Sbjct: 125 NKALHDTFSAFGGILSCKVA-TDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVF 183
Query: 255 VN 256
V
Sbjct: 184 VG 185
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ N +DEL K+ +G + A V+ D G+S+ F FV + +DA +E L
Sbjct: 205 VYVKNLGENTTDDELKKVFGAYGPISSAVVMRDN-EGKSKCFGFVNFELADDAAKAVEAL 263
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-SLLQAEDSNFVDSPYK---VYVGNLAKTVTSEML 198
NG + +E V +K + +L + + E + ++ Y+ +Y+ NL V E L
Sbjct: 264 NGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEK-YQGVNLYLKNLDDAVDDEKL 322
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ F+E G + S KV++ P +S G GFV FS+ E+A A++ +N ++ + + V
Sbjct: 323 RELFAEYGTITSCKVMKDP-QGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYV 378
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 10/178 (5%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++I N+ + IDN L G + +V D +G+S+ + FV + E A + I
Sbjct: 111 AANIFIKNLDKAIDNKALHDTFSAFGGILSCKVATDS-SGQSKGYGFVQFEKEESAQSAI 169
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
EK+NG + +++ V P V+ L S F + VYV NL + T + LKK
Sbjct: 170 EKVNGMLLNDKQVFVG----PFVRRQERDLSGGVSKFNN----VYVKNLGENTTDDELKK 221
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G + SA V+R KS FGFV F +DA A+ +LN + + V +A
Sbjct: 222 VFGAYGPISSAVVMRD-NEGKSKCFGFVNFELADDAAKAVEALNGKKQDEKEWYVGRA 278
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D+++L ++ E+G + +V+ D G+SR FV T E+A + ++
Sbjct: 308 LYLKNLDDAVDDEKLRELFAEYGTITSCKVMKDP-QGQSRGSGFVAFSTPEEATRAVTEM 366
Query: 144 NGTEIGGREIKVNITEK 160
N +G + + V + ++
Sbjct: 367 NTKMVGSKPLYVALAQR 383
>gi|453089427|gb|EMF17467.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 501
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 9/218 (4%)
Query: 48 KTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGA 107
K A+ +S R E S + + P A ++IGN+ N+D + LT+ +E G
Sbjct: 207 KPATQSESKKRKADSEPEETSKKAKTESNPDAVAN-LFIGNLSWNVDEEWLTREFEEFGE 265
Query: 108 VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL 167
+ +I D+ +GRS+ F +V EDA +E N + + R I+V+ + P + +
Sbjct: 266 LAGVRIITDRDSGRSKGFGYVEFTNAEDAAKALEAKNESLLDNRNIRVDFS-TPRDKSNA 324
Query: 168 SLLQAEDS---NFVDSPYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS 220
Q + F D+P + ++ GNL+ T +++++ F+E G V S ++ T
Sbjct: 325 GPQQRSNDRQQKFGDAPGEPTATIWCGNLSFDATEDVVREYFAEHGNVNSIRLPTDRDTG 384
Query: 221 KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
GFG+V S E+A+AA ++L + G+ +R++ A
Sbjct: 385 APKGFGYVEMGSVEEAQAAFNALQGQDVGGRPVRLDYA 422
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D P E ++ GN+ + D + + EHG V + D+ TG + F +V M +VE
Sbjct: 339 DAPGEPTATIWCGNLSFDATEDVVREYFAEHGNVNSIRLPTDRDTGAPKGFGYVEMGSVE 398
Query: 135 DANAVIEKLNGTEIGGREIKVNITE 159
+A A L G ++GGR ++++ +
Sbjct: 399 EAQAAFNALQGQDVGGRPVRLDYAQ 423
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + +V+ V+ D +G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSKTLSVK---VMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 248
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 249 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 306
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 307 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 355
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S + LS KV+R P + KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 S---KTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 263
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 293 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 350
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 351 NGRIVGSKPLYVALAQR 367
>gi|154269845|ref|XP_001535826.1| hypothetical protein HCAG_09244 [Ajellomyces capsulatus NAm1]
gi|150409464|gb|EDN04912.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 387
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +YIG + + D L +I + G V+ ++I DK + + + FV A
Sbjct: 87 PEPNKRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNS-KGLNYGFVEYDDPGAA 145
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ LNG + EI+VN Q+ ++N D+ + ++VG+L+ V
Sbjct: 146 ERAMSTLNGRRVHQSEIRVNWA-----------YQSNNNNKEDTSNHFHIFVGDLSNEVN 194
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR
Sbjct: 195 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIR 254
Query: 255 VNKA 258
N A
Sbjct: 255 CNWA 258
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 27/179 (15%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+++L ++ ++G V+ D G+S+ F FV + EDA ++ +
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD-GGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK--------------VYVGNL 189
NG E+ GR++ V +K + E N + ++ +YV NL
Sbjct: 252 NGKELNGRQVYVGRAQK----------KGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTN-------VYIKNFGEDMDDEKLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G LS +V+ G KS GFGFV+F EDA+ A+ +N L G+++ V +A
Sbjct: 212 SKYGPALSIRVMTDDG-GKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRA 266
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
PS +Y+G++ ++ L + G + V D T RS +A+V + D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I GR +++ +++ D SL ++ N +++ NL K++ +
Sbjct: 65 AERALDTMNFDVIKGRPLRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L FS G +LS KV V + S G+GFV F + E AE AI +N LL +++ V
Sbjct: 113 KALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GR 172
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 20/176 (11%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+P+ I +DEL K ++G + A V+ D+ +G SR F FV + E A +EK+
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 144 NGTEIG------GREIKVNITEKPLV----QVDLSLLQA-EDSNFVDSPYKVYVGNLAKT 192
NG +G GR K + E+ L Q +S + + SN +Y+ NL +
Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN-------LYLKNLDDS 338
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
V E LK+ FSE G V S KV+ + S GFGFV +S+ E+A A+ +N ++
Sbjct: 339 VNDEKLKEMFSEYGNVTSCKVM-MNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMI 393
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 41 SYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTK 100
S ++ +L A I D R+ + ++ S + V+I N+ +IDN L +
Sbjct: 99 SRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGN--------VFIKNLDASIDNKALYE 150
Query: 101 IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
G + +V D GRS+ + FV + E A A I+KLNG + +++ V
Sbjct: 151 TFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG---- 205
Query: 161 PLVQVDLSLLQAED-----SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLR 215
++ +D S V S VYV NL K +T + LKK F + G + SA V++
Sbjct: 206 -------HFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 258
Query: 216 -VPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
G S+S FGFV F S E A A+ +N
Sbjct: 259 DQSGNSRS--FGFVNFVSPEAAAVAVEKMN 286
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ +++ L + + V V D T RS +A+V EDA+ +E L
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 105
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I R I++ ++ + + S + V++ NL ++ ++ L + FS
Sbjct: 106 NYAPIRDRPIRIMLSNR------------DPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 204 EKGQVLSAKV-LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + V G SK G+GFV F EE A+AAI LN LL +++ V
Sbjct: 154 SFGTILSCKVAMDVVGRSK--GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++++++L ++ E+G V +V+ + G SR F FV E+A ++++
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEM 388
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + V + ++
Sbjct: 389 NGKMIGRKPLYVALAQR 405
>gi|380478106|emb|CCF43782.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 482
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 10/182 (5%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + + D L +I + G V+ ++I DK + + FV A
Sbjct: 82 PEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAA 140
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ LNG + EI+VN Q + S + ++F ++VG+L+ V E
Sbjct: 141 ERAMQTLNGRRVHQSEIRVNWA----YQSNTSSKEDTSNHF-----HIFVGDLSNEVNDE 191
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR N
Sbjct: 192 ILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCN 251
Query: 257 KA 258
A
Sbjct: 252 WA 253
>gi|50415109|gb|AAH77356.1| LOC398498 protein [Xenopus laevis]
Length = 471
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 32/178 (17%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE ++++GNI E+T + + +GAV V+ R++AFV M+ +A
Sbjct: 4 SEERMKIFVGNIDERTSEGEVTALFERYGAVLNCAVM--------RQYAFVHMRGTREAT 55
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+E+LNG E+ G+++ V ++ KP Q + +K++VGN++ + +
Sbjct: 56 KAVEELNGRELNGKKMLVELS-KPRPQ---------------NTWKIFVGNVSSSCEAAE 99
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++K F E G+VL +++ + FV + E +A AAI +LN ++G+RI V
Sbjct: 100 IRKIFEEYGRVLECDIVK--------DYAFVHMTRESEARAAIEALNGKDIKGKRINV 149
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + + E+ KI +E+G V + +++ D +AFV M +A A IE
Sbjct: 85 KIFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKD--------YAFVHMTRESEARAAIEA 136
Query: 143 LNGTEIGGREIKVNITEK 160
LNG +I G+ I V ++ K
Sbjct: 137 LNGKDIKGKRINVEMSNK 154
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 20/176 (11%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+P+ I +DEL K ++G + A V+ D+ +G SR F FV + E A +EK+
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 144 NGTEIG------GREIKVNITEKPLV----QVDLSLLQA-EDSNFVDSPYKVYVGNLAKT 192
NG +G GR K + E+ L Q +S + + SN +Y+ NL +
Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN-------LYLKNLDDS 338
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
V E LK+ FSE G V S KV+ + S GFGFV +S+ E+A A+ +N ++
Sbjct: 339 VNDEKLKEMFSEYGNVTSCKVM-MNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMI 393
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 41 SYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTK 100
S ++ +L A I D R+ + ++ S + V+I N+ +IDN L +
Sbjct: 99 SRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGN--------VFIKNLDASIDNKALYE 150
Query: 101 IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
G + +V D GRS+ + FV + E A A I+KLNG + +++ V
Sbjct: 151 TFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG---- 205
Query: 161 PLVQVDLSLLQAED-----SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLR 215
++ +D S V S VYV NL K +T + LKK F + G + SA V++
Sbjct: 206 -------HFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 258
Query: 216 -VPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
G S+S FGFV F S E A A+ +N
Sbjct: 259 DQSGNSRS--FGFVNFVSPEAAAVAVEKMN 286
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ +++ L + + V V D T RS +A+V EDA+ +E L
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 105
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I R I++ ++ + + S + V++ NL ++ ++ L + FS
Sbjct: 106 NYAPIRDRPIRIMLSNR------------DPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 204 EKGQVLSAKV-LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + V G SK G+GFV F EE A+AAI LN LL +++ V
Sbjct: 154 SFGTILSCKVAMDVVGRSK--GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++++++L ++ E+G V +V+ + G SR F FV E+A ++++
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEM 388
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + V + ++
Sbjct: 389 NGKMIGRKPLYVALAQR 405
>gi|356572088|ref|XP_003554202.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Glycine max]
Length = 336
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 23/202 (11%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
++AEE S +S+ P+ R++++ + N ++ L QEHG +E+ VI+DK TG
Sbjct: 50 SIAEEIKSIASAD---PAH--RKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIFDKVTG 104
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV----DLSLLQAEDSN 176
+SR + F+ K +E + + I GR N+ + L DLSL
Sbjct: 105 KSRGYGFITFKNMESTQQAL-RAPSKLIDGRLAVCNLACESLSGTSSAPDLSLR------ 157
Query: 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
K+Y+G+L+ VTSE+L F+ G++ V T++S GFGFVT+ + E A
Sbjct: 158 ------KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAA 211
Query: 237 EAAISSLNNSLLEGQRIRVNKA 258
+ AI + +L G+ I V A
Sbjct: 212 KKAIDDVEK-MLGGRNIVVKYA 232
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 60 FAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYT 119
AV S S + P R++YIG++ + ++ L HG +E+ V YD+ T
Sbjct: 135 LAVCNLACESLSGTSSAPDLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDT 194
Query: 120 GRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
SR F FV KT E A I+ + +GGR I V +
Sbjct: 195 NESRGFGFVTYKTAEAAKKAIDDVE-KMLGGRNIVVKYAD 233
>gi|367020140|ref|XP_003659355.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
gi|347006622|gb|AEO54110.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
Length = 534
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 11/189 (5%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE + +++GN+ +D++ L + Q G V A V+ DK +GRSR F +V + + A
Sbjct: 292 SEKSSTLWVGNLGWGVDDNALYEEFQHVGGVVGARVVTDKDSGRSRGFGYVDFENPDAAE 351
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDS---NFVDSPYK--VYVGNLAKT 192
+ NG + GRE++++ KP S AE + V SP ++VGNL +
Sbjct: 352 KAYNEKNGAFLQGREMRLDFASKPNADAPPSARAAERARKHGDVISPESDTLFVGNLPFS 411
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSS---GFGFVTFSSEEDAEAAISSLNNSLLE 249
+ + K F++ +V S LR+P +S GF +VTFSS EDA+ A +LN S L+
Sbjct: 412 ADEDSVSKFFNKAAKVQS---LRIPTDQESGRPKGFAYVTFSSVEDAKKAFETLNGSDLD 468
Query: 250 GQRIRVNKA 258
G+ +R++ A
Sbjct: 469 GRPVRLDYA 477
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 8/176 (4%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
SEF +YI N ++D++ L + ++G +V+ D +G+S+ F FV + E A
Sbjct: 186 ASEFTN-IYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAA 243
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPY---KVYVGNLAKT 192
+E++NG +I G+ I V +K + Q +L + + Y K+YV NL T
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDT 303
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L+ FS G ++ KV++ G SK GFGF+ FSS EDA A+ +N L
Sbjct: 304 IDDEKLRNEFSSFGSIIRVKVMQQEGQSK--GFGFICFSSLEDATKAMIEMNGCFL 357
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L + G + ++V+ D S+ +AFV + A+ IE++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + + KV + + + L+++ S F + +Y+ N + E LK FS
Sbjct: 158 NGKLL--KSCKVFVGRFKNRKDREAELRSKASEFTN----IYIKNFGGDMDDERLKDVFS 211
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ + KS GFGFV+F S E A+ A+ +N + GQ I V +A
Sbjct: 212 KYGKTLSVKVM-TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ++L + FS G VLS ++ R T +S G+ +V F DA+ A+ ++
Sbjct: 12 LYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDTM 71
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 72 NFDIIKGKSIRL 83
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ ID+++L G++ + +V+ + G+S+ F F+ ++EDA + +
Sbjct: 294 KLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVM--QQEGQSKGFGFICFSSLEDATKAMIE 351
Query: 143 LNGTEIGGREIKVNITE 159
+NG +G + I + + +
Sbjct: 352 MNGCFLGSKPISIALAQ 368
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
+ VY+ N+ + +D L K+ E G + A V+ D G+S+ F F+ +T EDA +E
Sbjct: 39 QNVYVKNLSESTTDDGLKKVFGEFGNITSAVVMRDA-DGKSKCFGFINFETAEDAAKAVE 97
Query: 142 KLNGTEIGGREIKVNITEKP--LVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSE 196
LNG + +E V +K Q S + VD Y+ +YV NL T+ E
Sbjct: 98 SLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDK-YQGLNLYVKNLDDTIDDE 156
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
LK+ FSE G + S KV+R P + S G GFV FS+ E+A A+S +N ++
Sbjct: 157 KLKELFSEFGTITSCKVMRDP-SGISRGSGFVAFSTSEEASRALSEMNGKMI 207
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A I+KLNG + +++ V L + E + + VYV NL+++ T
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHF--------LRKQERESTTGMTKFQNVYVKNLSESTTD 52
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ LKK F E G + SA V+R KS FGF+ F + EDA A+ SLN + + V
Sbjct: 53 DGLKKVFGEFGNITSAVVMRD-ADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYV 111
Query: 256 NKA 258
KA
Sbjct: 112 GKA 114
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+++L ++ E G + +V+ D +G SR FV T E+A+ + ++
Sbjct: 144 LYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDP-SGISRGSGFVAFSTSEEASRALSEM 202
Query: 144 NGTEIGGREIKVNITEK 160
NG I + + V + ++
Sbjct: 203 NGKMIVSKPLYVALAQR 219
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ R+ID+ L G + +V+ D+ S+ + FV +T E+A IEK+
Sbjct: 101 IFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + Q +L E +N VY+ NL + + E L+ F
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTN-------VYIKNLGEDMDDERLQGLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G LS KV+ + KS GFGFV+F EDA A+ +N L G++I V +A
Sbjct: 212 SKFGPALSVKVM-TDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRA 266
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 17/179 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N+ ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKV---------YVGNL 189
NG ++ G++I V +K + ++ ++ + P + YV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNL 311
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L+K FS G + SAKV G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 368
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ V F EDAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V + GRS+ F FV + E+A + ++
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 364 NGRIVATKPLYVALAQR 380
>gi|299751777|ref|XP_001830476.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298409530|gb|EAU91356.2| glycine-rich RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 142
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL+ T + L++ FS+ G VL + V+R T +S GFGFVT+S+ E+A+AAI+S
Sbjct: 4 KVYVGNLSWNTTDDSLRQAFSQYGNVLDSIVMRDRDTGRSRGFGFVTYSATEEADAAIAS 63
Query: 243 LNNSLLEGQRIRVNKA 258
L++ L+G+RI+VN A
Sbjct: 64 LHDQELDGRRIKVNIA 79
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ N +D L + ++G V + V+ D+ TGRSR F FV E+A+A I
Sbjct: 4 KVYVGNLSWNTTDDSLRQAFSQYGNVLDSIVMRDRDTGRSRGFGFVTYSATEEADAAIAS 63
Query: 143 LNGTEIGGREIKVNI 157
L+ E+ GR IKVNI
Sbjct: 64 LHDQELDGRRIKVNI 78
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++ +
Sbjct: 161 VYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDVM 219
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 277
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 278 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 326
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKP 161
Q ++ K+ V+ D+ + + FV +T E A IEK+NG + R++ V +
Sbjct: 88 QRDPSLRKSGVVCDENGPKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRK 145
Query: 162 LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK 221
+ +L E +N VY+ N + + E LK F + G LS KV+ + K
Sbjct: 146 EREAELGARAKEFTN-------VYIKNFGEDMDDEHLKDLFGKFGPALSVKVM-TDESGK 197
Query: 222 SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 198 SKGFGFVSFERHEDAQKAVDVMNGKELNGKQIYVGRA 234
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 321
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 322 NGRIVATKPLYVALAQR 338
>gi|348541381|ref|XP_003458165.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oreochromis
niloticus]
Length = 513
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 90 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEMPEAAQLALEQ 149
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ ++ + +
Sbjct: 150 MNSVVLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHPDLSDDDI 202
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T + G+GF+ + + A+ A++S+N L GQ +RV KA
Sbjct: 203 KSVFEAFGKIKSCMLAREPTTGRHKGYGFIEYEKAQSAQDAVASMNLFDLGGQYLRVGKA 262
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ ++ +D++ + + G ++ + + TGR + + F+
Sbjct: 175 IDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGRHKGYGFIEY 234
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + A + +N ++GG+ ++V P
Sbjct: 235 EKAQSAQDAVASMNLFDLGGQYLRVGKAVTP 265
>gi|82400162|gb|ABB72820.1| oligouridylate binding protein-like protein [Solanum tuberosum]
Length = 417
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R V++GNI + L ++ G VE ++I + + + F+ A I
Sbjct: 53 CRSVFVGNIHPQVTEPLLQEVFSSTGLVEGCKLIRKEKS----SYGFIHYYDRRSAALAI 108
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG + G+ IKVN + Q ED++ S + ++VG+L+ VT ML
Sbjct: 109 VSLNGRHLFGQPIKVNWA--------FASGQREDTS---SHFNIFVGDLSPEVTDAMLFA 157
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F +++DA++AI+ L L ++IR N A
Sbjct: 158 CFSVYPGCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S DT S F +++G++ + + L + A V++D+ TGRSR F
Sbjct: 126 AFASGQREDTSSHF--NIFVGDLSPEVTDAMLFACFSVYPGCSDARVMWDQKTGRSRGFG 183
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAED 174
FV + +DA + I L G +G R+I+ N K V+L+ +ED
Sbjct: 184 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDDKQSSDAKSVVELTNGSSED 243
Query: 175 SNFV---DSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
D+P VYVGN+A VT L + F L A V+ + GF
Sbjct: 244 GKEAANSDAPENNPQYTTVYVGNIAPEVTQLDLHRYF----HALGAGVIEEIRIQRDKGF 299
Query: 226 GFVTFSSEEDAEAAISSLN-NSLLEGQRIRV 255
GFV +++ +A AI N +S+L G++I+
Sbjct: 300 GFVRYNTHAEAALAIQMGNTHSVLGGRQIKC 330
>gi|406861752|gb|EKD14805.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 495
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 14/184 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + D L +I + G V+ ++I DK + + + FV A
Sbjct: 84 PEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNS-KGFNYGFVEYDDPAAA 142
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
++ LNG + EI+VN Q+ SN D+ + ++VG+L+ V
Sbjct: 143 ERAMQTLNGRRVHQAEIRVNWA-----------YQSNTSNKEDTSNHFHIFVGDLSNEVN 191
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L + FS G V A+V+ T +S G+GFV F +DAE A+SS++ L + IR
Sbjct: 192 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSMDGEWLGSRAIR 251
Query: 255 VNKA 258
N A
Sbjct: 252 CNWA 255
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 84 VYIGNI-PRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
VY+GN+ P ND L + Q G V + D R FAFV M T E+A I +
Sbjct: 307 VYVGNLTPYTTQND-LIPLFQNFGYVVETRFQAD------RGFAFVKMDTHENAAMAICQ 359
Query: 143 LNGTEIGGREIKVNIT-EKPLVQVDLSLLQAEDSNFVDSP 181
L+G + GR +K + +K Q QA S V +P
Sbjct: 360 LSGYNVNGRPLKCSWGKDKAPGQPGADGSQAPWSPAVQTP 399
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 20/176 (11%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+P+ I +DEL K ++G + A V+ D+ +G SR F FV + E A +EK+
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 144 NGTEIG------GREIKVNITEKPLV----QVDLSLLQA-EDSNFVDSPYKVYVGNLAKT 192
NG +G GR K + E+ L Q +S + + SN +Y+ NL +
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN-------LYLKNLDDS 352
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
V E LK+ FSE G V S KV+ + S GFGFV +S+ E+A A+ +N ++
Sbjct: 353 VNDEKLKEMFSEYGNVTSCKVM-MNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMI 407
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 41 SYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTK 100
S ++ +L A I D R+ + ++ S + V+I N+ +IDN L +
Sbjct: 113 SRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGN--------VFIKNLDASIDNKALYE 164
Query: 101 IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
G + +V D GRS+ + FV + E A A I+KLNG + +++ V
Sbjct: 165 TFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG---- 219
Query: 161 PLVQVDLSLLQAED-----SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLR 215
++ +D S V S VYV NL K +T + LKK F + G + SA V++
Sbjct: 220 -------HFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 272
Query: 216 -VPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
G S+S FGFV F S E A A+ +N
Sbjct: 273 DQSGNSRS--FGFVNFVSPEAAAVAVEKMN 300
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ +++ L + + V V D T RS +A+V EDA+ +E L
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 119
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I R I++ ++ + + S + V++ NL ++ ++ L + FS
Sbjct: 120 NYAPIRDRPIRIMLSNR------------DPSTRLSGKGNVFIKNLDASIDNKALYETFS 167
Query: 204 EKGQVLSAKV-LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + V G SK G+GFV F EE A+AAI LN LL +++ V
Sbjct: 168 SFGTILSCKVAMDVVGRSK--GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++++++L ++ E+G V +V+ + G SR F FV E+A ++++
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEM 402
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + V + ++
Sbjct: 403 NGKMIGRKPLYVALAQR 419
>gi|348503274|ref|XP_003439190.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oreochromis
niloticus]
Length = 526
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 13/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV E A +E+
Sbjct: 100 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 159
Query: 143 LNGTEIGGREIKV----NITE-KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+N +GGR IKV NI + +P++ D +A N ++YV ++ ++ +
Sbjct: 160 MNSVMLGGRNIKVGRPSNIGQAQPII--DQLAEEARAYN------RIYVASVHPDLSDDD 211
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F G++ S + R P T + GFGF+ + + A A+SS+N L GQ +RV K
Sbjct: 212 IKSVFEAFGRIKSCTLARDPTTGRHRGFGFIEYEKPQSALDAVSSMNLFDLGGQYLRVGK 271
Query: 258 A 258
A
Sbjct: 272 A 272
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ ++ +D++ + + G ++ + D TGR R F F+
Sbjct: 185 IDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTLARDPTTGRHRGFGFIEY 244
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + A + +N ++GG+ ++V P
Sbjct: 245 EKPQSALDAVSSMNLFDLGGQYLRVGKAVTP 275
>gi|401842356|gb|EJT44580.1| NSR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 393
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VI ++ T RSR + +V + A I+++
Sbjct: 143 IFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAIQEM 202
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP + F D+P + +++GNL+ + +
Sbjct: 203 QGKEIDGRPINCDLSTSKPAGNNTNDRAKK----FGDTPSEPSDTLFLGNLSFNADRDTI 258
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V FSS ED++ A+ SL ++ + +R++
Sbjct: 259 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQGEYIDNRPVRLD 316
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ ++ E LKK F G V+SA+V+ GT +S G+G+V F ++ AE AI
Sbjct: 140 PATIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAI 199
Query: 241 SSLNNSLLEGQRIRVN 256
+ ++G+ I +
Sbjct: 200 QEMQGKEIDGRPINCD 215
>gi|356565743|ref|XP_003551097.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 411
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + + L ++ GA+E ++I + + + FV A I
Sbjct: 45 CRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKS----SYGFVDYFDRSSAAFAI 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG I G+ IKVN + Q ED++ + ++VG+L+ VT L
Sbjct: 101 VTLNGRNIFGQPIKVNWA--------YASSQREDTS---GHFNIFVGDLSPEVTDATLYA 149
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F +++DA++AI+ L L ++IR N A
Sbjct: 150 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 207
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 27/211 (12%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +SS DT F +++G++ + + L + + A V++D+ TGRSR F
Sbjct: 118 AYASSQREDTSGHF--NIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFG 175
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAED 174
FV + +DA + I L G +G R+I+ N K V+L+ +ED
Sbjct: 176 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQTSDSRSVVELTNGSSED 235
Query: 175 SNFV---DSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
D+P K VYVGNLA VTS L + F L+A + + GF
Sbjct: 236 GQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHF----HSLNAGTIEDVRVQRDKGF 291
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
GFV +S+ +A AI N +L G+ I+ +
Sbjct: 292 GFVRYSTHAEAALAIQMGNARILFGKPIKCS 322
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++D L ++ + G + +V+ D +G SR F FV +T E+A + +
Sbjct: 193 IYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDS-SGHSRGFGFVNFETHEEAQKAVVHM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ GR + V +K + ++ ++ + N +YV NL ++ E L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQG-VNLYVKNLDDSIDDEKL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPYGMITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G + +V D++ SR F FV +T E A I +
Sbjct: 101 IFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQHAINTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + ++ V + + +V+L E +N +YV NL V + L++ F
Sbjct: 159 NGMLLNDHKVFVGHFKSRREREVELGARAMEFTN-------IYVKNLQADVDEQGLQELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G++LS KV+R + S GFGFV F + E+A+ A+ +N + G+ + V +A
Sbjct: 212 SQFGKMLSVKVMR-DSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRA 266
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT +L + FS G +LS +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++GQ IR+
Sbjct: 73 NFEMIKGQPIRI 84
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID+++L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGTKPLYVALAQR 370
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VI ++ T RSR + +V + A I+++
Sbjct: 143 IFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAIQEM 202
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP + F D+P + +++GNL+ + +
Sbjct: 203 QGKEIDGRPINCDLSTSKPAGNNTNDRAKK----FGDTPSEPSDTLFLGNLSFNADRDTI 258
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V FSS ED++ A+ SL ++ + +R++
Sbjct: 259 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSSLEDSKKALESLQGEYIDNRPVRLD 316
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
P ++VG L+ ++ E LKK F G V+SA+V+ GT +S G+G+V F ++ AE AI
Sbjct: 140 PATIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFENKSYAEKAI 199
Query: 241 SSLNNSLLEGQRIRVN 256
+ ++G+ I +
Sbjct: 200 QEMQGKEIDGRPINCD 215
>gi|398409740|ref|XP_003856335.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
gi|339476220|gb|EGP91311.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
Length = 505
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 98/184 (53%), Gaps = 12/184 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GNI N+D + LT+ +E G + +I D+ +GRS+ F +V ++A +E
Sbjct: 244 LFVGNISWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFSDPQNAKKALEAK 303
Query: 144 NGTEIGGREIKVNIT-----EKPLVQVDLSLLQAEDSNFVDSPYK-VYVGNLAKTVTSEM 197
NG E+ GRE++++ + + P + A + ++P ++VGN++
Sbjct: 304 NGAELDGRELRLDFSTPRTNDGPGAGNKSNDRAARFGDTTNAPAATLFVGNISFDADENA 363
Query: 198 LKKCFSEKGQVLSAKVLRVPG---TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+ + F E G + K +R+P T GFG+V SS E+A+AA ++L + + G+ IR
Sbjct: 364 ITEYFQEHGTI---KAVRLPTDRETGAPKGFGYVEMSSIEEAQAAFTALQGADIAGRPIR 420
Query: 255 VNKA 258
++ A
Sbjct: 421 LDYA 424
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + A +++GNI + D + +T+ QEHG ++ + D+ TG + F +V M ++E
Sbjct: 341 DTTNAPAATLFVGNISFDADENAITEYFQEHGTIKAVRLPTDRETGAPKGFGYVEMSSIE 400
Query: 135 DANAVIEKLNGTEIGGREIKVN 156
+A A L G +I GR I+++
Sbjct: 401 EAQAAFTALQGADIAGRPIRLD 422
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ R+ID+ L G + +V+ D+ S+ + FV +T E+A IEK+
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + Q +L E +N VY+ NL + + E L+ F
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTN-------VYIKNLGEDMDDERLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G LS KV+ + KS GFGFV+F EDA A+ +N L G++I V +A
Sbjct: 212 SRFGPALSVKVM-TDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRA 266
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 17/179 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N+ ++D++ L + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL------------VQVDLSLLQ--AEDSNFVDSPYKVYVGNL 189
NG ++ G++I V +K + ++ D ++ +D + +YV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNL 311
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L+K FS G + SAKV G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 368
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ V F EDAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V + GRS+ F FV + E+A + ++
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 364 NGRIVATKPLYVALAQR 380
>gi|410925539|ref|XP_003976238.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Takifugu
rubripes]
Length = 506
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSFDSVTMKHKGFAFVEYEMPEAAQLALEQ 152
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ ++ + +
Sbjct: 153 MNSVVLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHPDLSDDDI 205
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T + G+GFV + + A+ A++S+N L GQ +RV KA
Sbjct: 206 KSVFEAFGRIKSCLLAREPTTGRHKGYGFVEYDKAQSAQDAVASMNLFDLGGQYLRVGKA 265
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ ++ +D++ + + G ++ + + TGR + + FV
Sbjct: 178 IDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCLLAREPTTGRHKGYGFVEY 237
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKPLV 163
+ A + +N ++GG+ ++V P V
Sbjct: 238 DKAQSAQDAVASMNLFDLGGQYLRVGKAVTPPV 270
>gi|23928438|gb|AAN40024.1| putative oligouridylate binding protein [Zea mays]
Length = 639
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 25/210 (11%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S+ DT F +++G++ + + L + A V++D+ TGRSR F
Sbjct: 191 AYTSTPREDTSGHF--NIFVGDLCPEVTDATLFAFFSGYSTCSDARVMWDQKTGRSRGFG 248
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL----------VQVDLSLLQAE--- 173
FV + +DA + I LNG +G R+I+ N K +VDLS +E
Sbjct: 249 FVSFRNQQDAQSAINDLNGKWLGNRQIRCNWATKGANAGEEKQILDTKVDLSNGSSESGK 308
Query: 174 ----DSNFVDSPY--KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGF 227
D ++P VYVGNL T + F G S + +RV ++ GFGF
Sbjct: 309 ENPNDDGPENNPQFTTVYVGNLPHEATMNDVHLFFHSLG-AGSIEEVRV---TRDKGFGF 364
Query: 228 VTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
V +S+ E+A AI N L+ G++I+ +K
Sbjct: 365 VRYSTHEEAALAIQMGNGQLIGGRQIKSSK 394
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S R VY+GNI + + L ++ Q G VE ++I + + F F+ A
Sbjct: 115 SSTCRSVYVGNIHLQVTDTVLQEVFQSIGPVEGCKLIRKEKS----SFGFIDYYDRRYAA 170
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
I LNG ++ G+ IKVN + D S + ++VG+L VT
Sbjct: 171 LAILSLNGRQLYGQPIKVNWAYTSTPREDTS-----------GHFNIFVGDLCPEVTDAT 219
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L FS A+V+ T +S GFGFV+F +++DA++AI+ LN L ++IR N
Sbjct: 220 LFAFFSGYSTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGNRQIRCNW 279
Query: 258 A 258
A
Sbjct: 280 A 280
>gi|371927697|pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ + +D T + + FAFV + E A +E+
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQ 73
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 74 XNSVXLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 126
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS N L GQ +RV KA
Sbjct: 127 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSXNLFDLGGQYLRVGKA 186
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 99 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 158
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + + + N ++GG+ ++V P
Sbjct: 159 EKAQSSQDAVSSXNLFDLGGQYLRVGKAVTP 189
>gi|189205843|ref|XP_001939256.1| nucleolar protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975349|gb|EDU41975.1| nucleolar protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 756
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 12/215 (5%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPSEFARR-VYIGNIPRNIDNDELTKIVQEHGAVEKAE 112
D + A A+ SS+++ V TP E ARR +++ + N+ +++LT+ E ++ A
Sbjct: 13 DGAEAVTATADAEPSSNAAKV-TPKEVARRQLFVRGLAPNVTSEDLTEYFSESYPIKNAL 71
Query: 113 VIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQA 172
V+ DK T S+ + FV VEDA E+LN TEI G++IKV+ E + + +A
Sbjct: 72 VVLDKETRESKSYGFVTFADVEDAQRAKEELNNTEIKGKKIKVDFAEARQREGEEKRPRA 131
Query: 173 EDSNFVDSPY--------KVYVGNLAKTV-TSEMLKKCFSEKGQVLSAKVLRVPGTSKSS 223
D + K+ + NL T+ T E L+K F G+V + + P +
Sbjct: 132 GDRAKAEREQQIKEAQTPKLIIRNLPWTIKTQEDLQKLFRSYGKVNFVNLPKKP-NGELR 190
Query: 224 GFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
GFGFV+ +++AE AI LN ++ + I V+ A
Sbjct: 191 GFGFVSLRGKKNAERAIQELNGKEIDERPIAVDWA 225
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 170 LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
+Q +D+ Y ++V N+ TV E LK+ F + G + A+V+ T + G GFV+
Sbjct: 305 IQLDDNRPKREEYTLFVRNVPFTVDDERLKEHFQQFGGIRFARVVVDRETERPKGTGFVS 364
Query: 230 FSSEED 235
F +EED
Sbjct: 365 FFTEED 370
>gi|115473341|ref|NP_001060269.1| Os07g0615400 [Oryza sativa Japonica Group]
gi|23237933|dbj|BAC16506.1| putative oligouridylate binding protein [Oryza sativa Japonica
Group]
gi|113611805|dbj|BAF22183.1| Os07g0615400 [Oryza sativa Japonica Group]
gi|215737207|dbj|BAG96136.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767365|dbj|BAG99593.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637457|gb|EEE67589.1| hypothetical protein OsJ_25126 [Oryza sativa Japonica Group]
Length = 427
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S DT F +++G++ + + L + + A V++D+ TGRSR +
Sbjct: 137 AYASGQREDTTDHF--NIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYG 194
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ-----------VDLSLLQAEDS 175
FV + +DA + I LNG +G R+I+ N K DL+ ED
Sbjct: 195 FVSFRNQQDAQSAINDLNGQWLGSRQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDG 254
Query: 176 N---FVDSP-----YK-VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFG 226
D+P Y+ VYVGNLA VT ++L + F L A + GFG
Sbjct: 255 KEKANEDAPENNPQYRTVYVGNLAHEVTQDVLHRLF----HALGAGAIEEVRIQLGKGFG 310
Query: 227 FVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
FV +S+ +A AI N +L G+ I+
Sbjct: 311 FVRYSNHAEAALAIQMGNGRILGGKPIKC 339
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GN+ + L ++ Q G VE ++I + + + FV A I
Sbjct: 64 CRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKS----SYGFVDYYDRRSAALSI 119
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG +I G+ I+VN + Q ED+ + ++VG+L+ VT L
Sbjct: 120 LTLNGKQIFGQLIRVNWA--------YASGQREDTT---DHFNIFVGDLSPEVTDSALFA 168
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS A+V+ T +S G+GFV+F +++DA++AI+ LN L ++IR N A
Sbjct: 169 FFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWA 226
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQE--HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV 139
R VY+GN+ + D L ++ GA+E+ + K F FV +A
Sbjct: 270 RTVYVGNLAHEVTQDVLHRLFHALGAGAIEEVRIQLGK------GFGFVRYSNHAEAALA 323
Query: 140 IEKLNGTEIGGREIKVNITEKP 161
I+ NG +GG+ IK + KP
Sbjct: 324 IQMGNGRILGGKPIKCSWGNKP 345
>gi|115477340|ref|NP_001062266.1| Os08g0520300 [Oryza sativa Japonica Group]
gi|42408523|dbj|BAD09702.1| putative oligouridylate binding protein [Oryza sativa Japonica
Group]
gi|42409171|dbj|BAD10437.1| putative oligouridylate binding protein [Oryza sativa Japonica
Group]
gi|113624235|dbj|BAF24180.1| Os08g0520300 [Oryza sativa Japonica Group]
gi|215697677|dbj|BAG91671.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640879|gb|EEE69011.1| hypothetical protein OsJ_27962 [Oryza sativa Japonica Group]
Length = 447
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GN+ N+ L ++ Q G VE+ ++I + + F FV A I
Sbjct: 72 CRSVYVGNVHPNVTESLLIEVFQSSGLVERCKLIRKEKS----SFGFVDYYDRRSAALAI 127
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
L+G I G+ IKVN + Q ED++ + ++VG+L+ V L
Sbjct: 128 MTLHGRHICGQAIKVNWA--------YASTQREDTS---GHFHIFVGDLSSEVNDATLYA 176
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S G+GFV+F ++++AE AI+ + L ++IR N A
Sbjct: 177 CFSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWA 234
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A+ A +S+ DT F +++G++ +++ L + + A V++D TG
Sbjct: 139 AIKVNWAYASTQREDTSGHF--HIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTG 196
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ---------------- 164
RSR + FV + ++A I ++ G +G R+I+ N K +
Sbjct: 197 RSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKNNAEEKQETDNHNAVVLTNG 256
Query: 165 --VDLSLLQAEDSNFVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
+ + ++D+ ++P VYVGNL V + L + F G V + + +RV
Sbjct: 257 SSSNPGMEASQDTGSKENPENNPDCTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRV 315
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ GFGFV +S+ +A AI N ++ G+ I+
Sbjct: 316 ---QQDKGFGFVRYSNHGEAALAIQMANGLVVRGKPIKC 351
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+ ++ DEL + G A+E+ V DK F FV +A I+
Sbjct: 284 VYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQDK------GFGFVRYSNHGEAALAIQ 337
Query: 142 KLNGTEIGGREIKVNITEKP 161
NG + G+ IK + KP
Sbjct: 338 MANGLVVRGKPIKCSWGNKP 357
>gi|361127946|gb|EHK99901.1| putative Nucleolysin TIA-1 [Glarea lozoyensis 74030]
Length = 505
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR-----FAFVMMK 131
P R +Y+G + + D L +I + G V+ ++I DK G ++ + FV
Sbjct: 82 PEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQHVKIIPDKNVGAEQQAKGFNYGFVEYD 141
Query: 132 TVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNL 189
A ++ LNG + EI+VN Q+ SN D+ + ++VG+L
Sbjct: 142 DPGAAERAMQTLNGRRVHQAEIRVNWA-----------YQSNTSNKEDTSNHFHIFVGDL 190
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ V E+L + FS G V A+V+ T +S G+GFV F +DAE A+SS++ L
Sbjct: 191 SNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSMDGEWLG 250
Query: 250 GQRIRVNKA 258
+ IR N A
Sbjct: 251 SRAIRCNWA 259
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 97/177 (54%), Gaps = 6/177 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+GN+P ++ + +L ++ G + +++V + +TG S+ + FV A A I ++
Sbjct: 206 LYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRM 265
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSL-----LQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG + G+ ++V + P + S+ ++ S +D +YV NL+ ++T E L
Sbjct: 266 NGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMS-SLYVRNLSLSMTKEEL 324
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ F G+++ AKV R T + G+GFV +S+ +A AI LN L+EG+++ V
Sbjct: 325 LQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEV 381
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G IP ++ D+L ++ + G + + V + + + A A I+ +
Sbjct: 607 VFVGRIPSTVNGDQLVELFRPFGQIVQVRVF------QHQGYGMFRFNDPFSAAAAIDHM 660
Query: 144 NGTEIGGREIKVNITEKP------LVQVDLSL-LQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG +IGG + V + P DL L + + +D +YV +L +T+E
Sbjct: 661 NGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDMA-NLYVCHLPLYITTE 719
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L + F GQ+ A+V+ T S GFGFV F+ A A++ +N LEG + V
Sbjct: 720 KLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNGYPLEGHILEVR 779
Query: 257 KA 258
A
Sbjct: 780 IA 781
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
ET S S +D S +Y+ N+ ++ +EL + G + A+V D TG ++
Sbjct: 296 ETYSQPSEEIDMSS-----LYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKG 350
Query: 125 FAFVMM-KTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SP 181
+ FV + E ANA+I LNG + G++++V ++ + ++ D+ +
Sbjct: 351 YGFVRYSNSHEAANAIIH-LNGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDM 409
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG-FGFVTFSSEEDAEAAI 240
+YV N+ ++ ++ L + F G++ A+V GT G +GFV F+ + A AI
Sbjct: 410 ANLYVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAI 469
Query: 241 SSLNNSLLEGQRIRVNKA 258
+ ++ +L+EG+ + V A
Sbjct: 470 TLMDGALVEGETLVVRVA 487
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 23/220 (10%)
Query: 47 LKTASIEDSTTRLFAVAEETASSSSSSVD-----TPSEFARRVYIGNIPRNIDNDELTKI 101
L ++ + T + VA ++S+SS +V +P R+YI N+PR+ + D + K+
Sbjct: 471 LMDGALVEGETLVVRVAGLSSSASSPAVHGLPIPSPEINKSRIYITNLPRSTNADMMVKL 530
Query: 102 VQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK- 160
G + K + + ++ V V A I+ ++G IGG+ + V ++
Sbjct: 531 FVPFGQISKVVM--------NLEYSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSDSC 582
Query: 161 PLVQVDLSLLQ--AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG 218
P + Q ++ +D V+VG + TV + L + F GQ++ +V
Sbjct: 583 PTDAAGHTSTQSLGKEVKEIDMA-NVFVGRIPSTVNGDQLVELFRPFGQIVQVRVF---- 637
Query: 219 TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+G F+ A AAI +N + G + V A
Sbjct: 638 --QHQGYGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVA 675
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 161 PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS 220
PL Q L + +++N +YVGNL +V S L + F G+++ +KV T
Sbjct: 190 PLSQEGGKLKEVDNTN-------LYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTG 242
Query: 221 KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G+GFV + A AAI+ +N L++G+ + V A
Sbjct: 243 LSKGYGFVKYDDPHSATAAINRMNGRLVDGKILEVRVA 280
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 17/179 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N+ ++D++ L + G +V+ D+ +G+S+ F FV + EDA +E++
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL------------VQVDLSLLQ--AEDSNFVDSPYKVYVGNL 189
NG ++ G++I V +K + ++ D ++ +D + +YV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNL 311
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L+K FS G + SAKV G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEGGRSK--GFGFVCFSSPEEATKAVTEMNGKIV 368
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ R+ID+ L G + +V+ D+ S+ + FV +T E+A IEK+
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + ++ V + Q +L E +N VY+ NL + + E L+ F
Sbjct: 159 NGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTN-------VYIKNLGEDMDDERLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G LS KV+ + KS GFGFV+F EDA A+ +N L G++I V +A
Sbjct: 212 GRFGPALSVKVM-TDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRA 266
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ V F EDAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V + GRS+ F FV + E+A + ++
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 364 NGKIVATKPLYVALAQR 380
>gi|241953527|ref|XP_002419485.1| poly uridylate-binding protein, putative; poly(A)+ RNA-binding
protein, putative [Candida dubliniensis CD36]
gi|223642825|emb|CAX43080.1| poly uridylate-binding protein, putative [Candida dubliniensis
CD36]
Length = 497
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 10/177 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+Y+GN+P++ + + ++ G V+ +V+ DK +AF+ T E A+ +
Sbjct: 72 LYVGNLPKSASEEMIQELFSVDGNPVKTIKVLNDKNKA-GFNYAFIEYDTNEAADMALNT 130
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVGNLAKTVTSEMLKKC 201
LNG + EIKVN + S A + N + P + ++VG+L+ V E L+
Sbjct: 131 LNGRLVDNVEIKVNWAFQ-------SAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNA 183
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS+ + A V+ TS+S G+GFVTF ++ DAE A+ ++N L G+ IR N A
Sbjct: 184 FSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWA 240
>gi|297687493|ref|XP_002821247.1| PREDICTED: nucleolysin TIAR isoform 2 [Pongo abelii]
gi|410976207|ref|XP_003994514.1| PREDICTED: nucleolysin TIAR isoform 2 [Felis catus]
Length = 393
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I +++ G + A V+ D TG+S+ + FV DA I
Sbjct: 116 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 175
Query: 143 LNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L+ ED SP VY G +A +T
Sbjct: 176 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 235
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FS+ E A AI S+N + +EG ++
Sbjct: 236 DQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 289
Query: 255 V 255
Sbjct: 290 C 290
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 96/192 (50%), Gaps = 24/192 (12%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFA 126
R +Y+GN+ R++ + ++ + G + ++I ++ R + +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA A + +NG +I G+E+KVN P Q + + + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKILPVNH---------FHVFV 119
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 120 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 179
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 180 WLGGRQIRTNWA 191
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 7/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D+Y G S+ + FV +T E A I+ +
Sbjct: 76 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATNAIKHV 134
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + E KV + + S + +NF + +YV N+ + VT E + F
Sbjct: 135 NGMLL--NEKKVFVGHHIAKKDRQSKFEEMKANFTN----IYVKNVEQDVTDEEFRALFE 188
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G + SA + R T KS GFGFV FS E A AA+ LN L+GQ++ V +A
Sbjct: 189 KYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRA 243
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +++ ++E + +++G + A + D TG+SR F FV E A+A +E L
Sbjct: 169 IYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGL 228
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N E+ G+++ V +K + + Q E + S Y+ +Y+ NL+ + E L+
Sbjct: 229 NEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 288
Query: 200 KCFSEKGQVLSAKVLR 215
+ FS G + SAKV+R
Sbjct: 289 ELFSSYGNITSAKVMR 304
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
ML + FS GQV S +V R T +S G+ +V +++ D E A+ LN +L++G+ R+
Sbjct: 1 MLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRI 59
>gi|186478580|ref|NP_001117301.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
gi|332191459|gb|AEE29580.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
Length = 416
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + L ++ G VE ++I + + + FV A I
Sbjct: 53 CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SYGFVHYFDRRSAGLAI 108
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG + G+ IKVN + Q ED++ S + ++VG+L+ VT ML
Sbjct: 109 LSLNGRHLFGQPIKVNWA--------YASGQREDTS---SHFNIFVGDLSPEVTDAMLFT 157
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F +++DA+ AI + L ++IR N A
Sbjct: 158 CFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 25/208 (12%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S DT S F +++G++ + + L + A V++D+ TGRSR F
Sbjct: 126 AYASGQREDTSSHF--NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAED 174
FV + +DA I+++ G +G R+I+ N K V+L+ +D
Sbjct: 184 FVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKD 243
Query: 175 SNFVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ ++P VYVGNLA V+ L + F L A V+ + GFGFV
Sbjct: 244 TTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHF----HSLGAGVIEEVRVQRDKGFGFV 299
Query: 229 TFSSEEDAEAAISSLN-NSLLEGQRIRV 255
+S+ +A AI N +S L G++++
Sbjct: 300 RYSTHVEAALAIQMGNTHSYLSGRQMKC 327
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 17/179 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N+ ++D++ L + G +V+ D+ +G+S+ F FV + EDA +E++
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL------------VQVDLSLLQ--AEDSNFVDSPYKVYVGNL 189
NG ++ G++I V +K + ++ D ++ +D + +YV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNL 311
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ E L+K FS G + SAKV G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEGGRSK--GFGFVCFSSPEEATKAVTEMNGKIV 368
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ R+ID+ L G + +V+ D+ S+ + FV +T E+A IEK+
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + ++ V + Q +L E +N VY+ NL + + E L+ F
Sbjct: 159 NGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTN-------VYIKNLGEDMDDERLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G LS KV+ + KS GFGFV+F EDA A+ +N L G++I V +A
Sbjct: 212 GRFGPALSVKVM-TDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRA 266
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +S G+ V F EDAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ +R+
Sbjct: 73 NFDVIKGKPVRI 84
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V + GRS+ F FV + E+A + ++
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 364 NGKIVATKPLYVALAQR 380
>gi|18394471|ref|NP_564018.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
gi|9665134|gb|AAF97318.1|AC007843_21 Putative RNA binding protein [Arabidopsis thaliana]
gi|21553830|gb|AAM62923.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
gi|111074422|gb|ABH04584.1| At1g17370 [Arabidopsis thaliana]
gi|332191458|gb|AEE29579.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
Length = 419
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + L ++ G VE ++I + + + FV A I
Sbjct: 53 CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SYGFVHYFDRRSAGLAI 108
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG + G+ IKVN + Q ED++ S + ++VG+L+ VT ML
Sbjct: 109 LSLNGRHLFGQPIKVNWA--------YASGQREDTS---SHFNIFVGDLSPEVTDAMLFT 157
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F +++DA+ AI + L ++IR N A
Sbjct: 158 CFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S DT S F +++G++ + + L + A V++D+ TGRSR F
Sbjct: 126 AYASGQREDTSSHF--NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAED 174
FV + +DA I+++ G +G R+I+ N K V+L+ +ED
Sbjct: 184 FVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSED 243
Query: 175 SNFV---DSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
++P VYVGNLA V+ L + F L A V+ + GF
Sbjct: 244 GKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHF----HSLGAGVIEEVRVQRDKGF 299
Query: 226 GFVTFSSEEDAEAAISSLN-NSLLEGQRIRV 255
GFV +S+ +A AI N +S L G++++
Sbjct: 300 GFVRYSTHVEAALAIQMGNTHSYLSGRQMKC 330
>gi|170091988|ref|XP_001877216.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648709|gb|EDR12952.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 218
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 9/177 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++G + +DND L + + G +E A V D+ TG+SR F +V T DA ++
Sbjct: 1 VFVGQLSWAVDNDRLAQEFADCGEIESATVQMDRNTGKSRGFGYVHF-TTPDAVEKALQM 59
Query: 144 NGTEIGGREIKVNIT-EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG EI GR IKV+ + + QV QA ++VGNL+ VT + + F
Sbjct: 60 NGQEIDGRAIKVDRSLPRDKSQVREKRAQAFGDEVSAPSSTLFVGNLSFGVTEDTVWSFF 119
Query: 203 SEKGQVLSAKVLRVPG---TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
++ G K +R+P T + GFG+V F + A+ A + N S +EG+ IR++
Sbjct: 120 NDYG----VKSVRLPTDRETGRPKGFGYVEFEDIDGAKKAFEAANGSEIEGRSIRLD 172
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
V+VG L+ V ++ L + F++ G++ SA V T KS GFG+V F++ + E A+ +
Sbjct: 1 VFVGQLSWAVDNDRLAQEFADCGEIESATVQMDRNTGKSRGFGYVHFTTPDAVEKAL-QM 59
Query: 244 NNSLLEGQRIRVNKA 258
N ++G+ I+V+++
Sbjct: 60 NGQEIDGRAIKVDRS 74
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V E+ A + V PS +++GN+ + D + ++G V+ + D+ TGR
Sbjct: 82 VREKRAQAFGDEVSAPSS---TLFVGNLSFGVTEDTVWSFFNDYG-VKSVRLPTDRETGR 137
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
+ F +V + ++ A E NG+EI GR I+++ ++
Sbjct: 138 PKGFGYVEFEDIDGAKKAFEAANGSEIEGRSIRLDYSQ 175
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ NI D L ++ ++G V V+ D GRSR F FV E+A ++ L
Sbjct: 202 VYVKNLIENITEDILHRLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCHPENAKKAVDSL 260
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKK 200
+G ++G + + V K + ++ + D+ S + +YV NL++++ L++
Sbjct: 261 HGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTLRE 320
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F GQ++SAKV+R +S GFGFV FS+ E+++ A LN ++G+ + V A
Sbjct: 321 IFGRYGQIVSAKVMRHE-NGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVA 377
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +I + L ++ G + +V+ + G+S+ F FV +T + A L
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVVEE--NGQSKGFGFVQFETEQSAVTARSAL 169
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
+G+ + G+++ V + + + A + F + VYV NL + +T ++L + FS
Sbjct: 170 HGSMVDGKKLFV----AKFINKNERVAMAGNKGFTN----VYVKNLIENITEDILHRLFS 221
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G V S V+R G +S GFGFV F E+A+ A+ SL+ + + + V KA
Sbjct: 222 QYGTVSSVVVMR-DGMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVGKA 275
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ +L V + + TG+S +A++ + A+ + +L
Sbjct: 23 LYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAMARL 82
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T++ G+ +++ +++ DLS + + F + +YV NL ++TS L++ F+
Sbjct: 83 NHTDLKGKAMRIMWSQR-----DLSYRR--RTGFGN----LYVKNLDISITSSGLERMFN 131
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS KV+ G SK GFGFV F +E+ A A S+L+ S+++G+++ V K
Sbjct: 132 PFGVILSCKVVEENGQSK--GFGFVQFETEQSAVTARSALHGSMVDGKKLFVAK 183
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++++ L +I +G + A+V+ + GRS+ F FV E++ L
Sbjct: 304 LYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHE-NGRSKGFGFVCFSNREESKQAKRYL 362
Query: 144 NGTEIGGREIKVNITEK 160
NG + G+ + V + E+
Sbjct: 363 NGFSVDGKLLVVRVAER 379
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 55/76 (72%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL+ T + L++ FSE G +L + V+R T +S GFGFVTF + E+A+AAI++
Sbjct: 4 KVYVGNLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAINN 63
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+RIRVN A
Sbjct: 64 LNEQELDGRRIRVNLA 79
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ N +D L + E GA+ + V+ D+ TGRSR F FV T E+A+A I
Sbjct: 4 KVYVGNLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAINN 63
Query: 143 LNGTEIGGREIKVNI 157
LN E+ GR I+VN+
Sbjct: 64 LNEQELDGRRIRVNL 78
>gi|160332383|sp|Q6IQE0.2|PU60B_DANRE RecName: Full=Poly(U)-binding-splicing factor PUF60-B
Length = 516
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKVNITEKP--LVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+N +GGR IKV +P + Q + Q AE++ + ++YV ++ ++ + +K
Sbjct: 147 MNSVMLGGRNIKVG---RPGSIGQAQPIIEQLAEEARAYN---RIYVASIHPDLSDDDIK 200
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ S + R P T K GFGF+ + + + A+SS+N L GQ +RV KA
Sbjct: 201 SVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259
>gi|363754371|ref|XP_003647401.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891038|gb|AET40584.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
Length = 448
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 101/188 (53%), Gaps = 12/188 (6%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEH-GAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
D+P+E A +++G + +ID DE K EH G V A VIY++ T RSR + +V +
Sbjct: 205 DSPTEPAT-IFVGRLSWSID-DEWLKTEFEHIGGVISARVIYERGTERSRGYGYVDFEDK 262
Query: 134 EDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGN 188
A I+++ G EI GR I V++ T KP + F D P + +++GN
Sbjct: 263 SYAEKAIKEMQGKEIDGRPINVDMSTSKPASNPKEDRAK----KFGDVPSQPSDTLFLGN 318
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+ + + + F + G ++S ++ P T++ GFG+V ++S E+A+ A+ L +
Sbjct: 319 LSFNADRDNIFELFKDYGSIISVRIPTHPETNQPKGFGYVQYASIEEAQKALDKLQGEYI 378
Query: 249 EGQRIRVN 256
+ + +R++
Sbjct: 379 DNRPVRLD 386
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 47/84 (55%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D PS+ + +++GN+ N D D + ++ +++G++ + T + + F +V ++E
Sbjct: 305 DVPSQPSDTLFLGNLSFNADRDNIFELFKDYGSIISVRIPTHPETNQPKGFGYVQYASIE 364
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
+A ++KL G I R ++++ +
Sbjct: 365 EAQKALDKLQGEYIDNRPVRLDFS 388
>gi|358397912|gb|EHK47280.1| hypothetical protein TRIATDRAFT_165657, partial [Trichoderma
atroviride IMI 206040]
Length = 465
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 10/182 (5%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + + D L +I + G V+ ++I DK + + FV A
Sbjct: 71 PEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAA 129
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ + LNG + EI+VN Q + + + ++F ++VG+L+ V +
Sbjct: 130 DRAMATLNGRRVHQSEIRVNWA----YQSNTTTKEDTSNHF-----HIFVGDLSNEVNDD 180
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR N
Sbjct: 181 ILHQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCN 240
Query: 257 KA 258
A
Sbjct: 241 WA 242
>gi|41581275|emb|CAE47924.1| oligouridylate binding protein, putative [Aspergillus fumigatus]
Length = 485
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVED 135
P R +Y+G + + D L +I + G V+ ++I DK + + + FV
Sbjct: 86 PEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFNSKGYNYGFVEFDDPGA 145
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYKVYVGNLAKTV 193
A ++ LNG I EI+VN Q+ +N D S + ++VG+L+ V
Sbjct: 146 AERAMQTLNGRRIHQSEIRVNWA-----------YQSNSANKEDTSSHFHIFVGDLSNEV 194
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
E+L + FS G V A+V+ T +S G+GFV F DAE A+++++ L + I
Sbjct: 195 NDEILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALNAMDGEWLGSRAI 254
Query: 254 RVNKA 258
R N A
Sbjct: 255 RCNWA 259
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TP ++ Y+GN+ ++L + G V + + D R FAF+ M T E+
Sbjct: 304 TP-QWQTTCYVGNLTPYTTQNDLVPLFHNFGYVLETRLQAD------RGFAFIKMDTHEN 356
Query: 136 ANAVIEKLNGTEIGGREIKVNITE--KPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAK 191
A I +LNG + GR +K + + P Q D Q +S F +P Y G
Sbjct: 357 AAMAICQLNGYNVNGRPLKCSWGKDRPPTGQFDNFSGQQPNSPFNSNPATYFPQYGGPGA 416
Query: 192 TVTSE 196
+T +
Sbjct: 417 PITPQ 421
>gi|17510025|ref|NP_491176.1| Protein RNP-6, isoform b [Caenorhabditis elegans]
gi|373220165|emb|CCD72565.1| Protein RNP-6, isoform b [Caenorhabditis elegans]
Length = 749
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I I D L + G ++ + +D TG + FAFV + E A E
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 143 LNGTEIGGREIKVN---------ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+NG +GGR +KVN P Q + ++Q + + ++VYV ++ +
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKY----FRVYVSSVHPDL 218
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
+ LK F G+++ ++ R P GFG++ F++ AI+ +N L GQ +
Sbjct: 219 SETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYL 278
Query: 254 RVNKA 258
RV K
Sbjct: 279 RVGKC 283
>gi|440797982|gb|ELR19056.1| spliceosomal protein, putative [Acanthamoeba castellanii str. Neff]
Length = 316
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+G + + L +++ + G V + DK T + + FV T EDA I+ +
Sbjct: 13 VYVGELDSRVSEALLWELMLQSGPVVNVYIPKDKLTNLHQGYGFVEFATEEDAEYAIKIM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N ++ G+ ++VN ++ D VD +++GNL V ++L FS
Sbjct: 73 NMIKLYGKPLRVNKAKR-------------DGKTVDVGANLFIGNLDAEVDEKLLYDTFS 119
Query: 204 EKGQVLSA-KVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G +++ K++R P T +S GFGFV+F S E ++AAI S+NN L + I V+ A
Sbjct: 120 AFGVIITTPKIMRDPETGESRGFGFVSFDSFESSDAAIESMNNQYLCNRAITVSYA 175
>gi|322795213|gb|EFZ18035.1| hypothetical protein SINV_11488 [Solenopsis invicta]
Length = 455
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + D L + + GAV+ ++I + + +AFV + A +
Sbjct: 80 RTLYVGNLDTTVSEDLLCALFSQIGAVKGCKIIREP---GNDPYAFVEFTNHQCAATALA 136
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +E+KVN P Q L + SN + ++VG+L+ + ++ LK+
Sbjct: 137 AMNKRSFLEKEMKVNWATSPGNQPKL-----DTSNH----HHIFVGDLSPEIETQTLKEA 187
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F+ G++ + +++R P T KS G+ FV+F + +AEAAI+++N L + IR N
Sbjct: 188 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTN 242
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 8/190 (4%)
Query: 66 TASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF 125
T+ + +DT + +++G++ I+ L + G + ++ D T +S+ +
Sbjct: 154 TSPGNQPKLDTSNH--HHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGY 211
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVY 185
AFV +A A I +NG +G R I+ N + + + +++ + +Y
Sbjct: 212 AFVSFVKKSEAEAAINAMNGQWLGSRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVLY 271
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
G +T E++KK FS G + +V K G+ F+ F+++E A AI S +N
Sbjct: 272 CGGFTNGITDELIKKTFSPFGTIQDIRVF------KDKGYAFIKFTTKEAATHAIESTHN 325
Query: 246 SLLEGQRIRV 255
+ + G ++
Sbjct: 326 TEINGSIVKC 335
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 16/174 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ IDN +L G + +V+ D+ G S + +V +T E ANA IEKL
Sbjct: 129 IFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKL 188
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
+G I G+E++V ++ D +DS Y+ N+ L + F+
Sbjct: 189 DGMLIDGQEVQVG-----------HFMRRNDRPDIDSWTNCYIKNVPYEWDDARLNQEFA 237
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN----SLLEGQRI 253
+ G+VLSA V R T+++ GFGF+ F+ E A AA+ +LN + L+G+ I
Sbjct: 238 QFGEVLSATVSRE-DTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEI 290
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 99/203 (48%), Gaps = 17/203 (8%)
Query: 53 EDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAE 112
E+ TT +++S + TPS +Y+G++ +++ L +I G V
Sbjct: 15 ENPTTEAPVAVPSASTASDNPFQTPS-----LYVGDLAPDVNESLLFEIFSAVGPVASIR 69
Query: 113 VIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQA 172
V D T RS +++V + DA ++ +N + I G+ ++ +++ D SL ++
Sbjct: 70 VCRDAVTRRSLGYSYVNFHQMADAERAMDTMNFSMIKGKPCRIMWSQR-----DPSLRRS 124
Query: 173 EDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232
N ++V NL + + ++ L FS G +LS KV+ S G+G+V + +
Sbjct: 125 GVGN-------IFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYET 177
Query: 233 EEDAEAAISSLNNSLLEGQRIRV 255
E A AAI L+ L++GQ ++V
Sbjct: 178 AEAANAAIEKLDGMLIDGQEVQV 200
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 13/184 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
YI N+P D+ L + + G V A V + T ++ F F+ E A A +E L
Sbjct: 218 CYIKNVPYEWDDARLNQEFAQFGEVLSATVSRED-TNQTLGFGFINFAEHESAVAAVEAL 276
Query: 144 NGTE----IGGREIKVNI-----TEKPLVQVDL-SLLQAEDSNFVD--SPYKVYVGNLAK 191
NG E + G EI I +K + +L + +AE + + +YV NL
Sbjct: 277 NGKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGVNLYVKNLDD 336
Query: 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251
+VT +ML+ F+ G + SA+V++ +S GFGFV +S+ E++ A++ +N L+ +
Sbjct: 337 SVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIANK 396
Query: 252 RIRV 255
I V
Sbjct: 397 PIFV 400
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++ +D L G + A V+ D GRSR F FV T E++ + ++
Sbjct: 329 LYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEM 388
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP 181
NG I + I V + ++ +V + L+A+ +N P
Sbjct: 389 NGKLIANKPIFVALAQR--REVRRAQLEAQHANRAGGP 424
>gi|340905400|gb|EGS17768.1| putative polyadenylated RNA protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 485
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + D L +I + G V+ ++I DK R + FV A
Sbjct: 88 PEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDK-NHRGYNYGFVEYDDPGAA 146
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
++ LNG + EI+VN Q+ ++N D+ + ++VG+L+ V
Sbjct: 147 ERAMQTLNGRRVHQNEIRVNWA-----------YQSNNANKEDTSNHFHIFVGDLSNEVN 195
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L + FS G + A+V+ T +S G+GFV F DAE A+SS++ L + IR
Sbjct: 196 DEVLWQAFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIR 255
Query: 255 VNKA 258
N A
Sbjct: 256 CNWA 259
>gi|426253188|ref|XP_004020282.1| PREDICTED: nucleolysin TIAR isoform 3 [Ovis aries]
Length = 385
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
V++G++ I +++ G + A V+ D TG+S+ + FV DA I
Sbjct: 108 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 167
Query: 143 LNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ G +GGR+I+ N T KP + + L+ ED SP VY G +A +T
Sbjct: 168 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 227
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+++++ FS GQ++ +V G+ FV FS+ E A AI S+N + +EG ++
Sbjct: 228 DQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 281
Query: 255 V 255
Sbjct: 282 C 282
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 13/183 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 65
Query: 142 KLNGTEIGGREIKVNITEKPLVQVD------LSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
+NG +I G+E+KVN P Q + + +F V+VG+L+ +T+
Sbjct: 66 AMNGRKILGKEVKVNWATTPSSQKKDTSSKYFCCILRKSYHF-----HVFVGDLSPEITT 120
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR
Sbjct: 121 EDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRT 180
Query: 256 NKA 258
N A
Sbjct: 181 NWA 183
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 7 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 62
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 63 ALAAMNGRKILGKEVKVNWA 82
>gi|327357360|gb|EGE86217.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces dermatitidis ATCC 18188]
Length = 492
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +YIG + + D L +I + G V+ ++I DK + + + FV A
Sbjct: 87 PEPNKRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNS-KGLNYGFVEYDDPGAA 145
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
+ LNG + EI+VN Q+ +SN D+ + ++VG+L+ V
Sbjct: 146 ERAMATLNGRRVHQSEIRVNWA-----------YQSNNSNKEDTSNHFHIFVGDLSNEVN 194
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR
Sbjct: 195 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIR 254
Query: 255 VNKA 258
N A
Sbjct: 255 CNWA 258
>gi|413920411|gb|AFW60343.1| putative oligouridylate binding protein [Zea mays]
Length = 425
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 25/210 (11%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S+ DT F +++G++ + + L + A V++D+ TGRSR F
Sbjct: 191 AYTSTPREDTSGHF--NIFVGDLCPEVTDATLFAFFSGYSTCSDARVMWDQKTGRSRGFG 248
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNIT--------EKPLV--QVDLSLLQAE--- 173
FV + +DA + I LNG +G R+I+ N EK ++ +VDLS +E
Sbjct: 249 FVSFRNQQDAQSAINDLNGKWLGNRQIRCNWATKGANAGEEKQILDTKVDLSNGSSESGK 308
Query: 174 DSNFVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGF 227
++ D P VYVGNL T + F G S + +RV ++ GFGF
Sbjct: 309 ENPNEDGPENNPQFTTVYVGNLPHEATMNDVHLFFHSLG-AGSIEEVRV---TRDKGFGF 364
Query: 228 VTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
V +S+ E+A AI N L+ G++I+ +K
Sbjct: 365 VRYSTHEEAALAIQMGNGQLIGGRQIKSSK 394
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + + L ++ Q G VE ++I + + F F+ A I
Sbjct: 118 CRSVYVGNIHLQVTDTVLQEVFQSIGPVEGCKLIRKEKS----SFGFIDYYDRRYAALAI 173
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG ++ G+ IKVN + D S + ++VG+L VT L
Sbjct: 174 LSLNGRQLYGQPIKVNWAYTSTPREDTS-----------GHFNIFVGDLCPEVTDATLFA 222
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS A+V+ T +S GFGFV+F +++DA++AI+ LN L ++IR N A
Sbjct: 223 FFSGYSTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGNRQIRCNWA 280
>gi|58266842|ref|XP_570577.1| mRNA catabolism, nonsense-mediated-related protein [Cryptococcus
neoformans var. neoformans JEC21]
gi|134110468|ref|XP_776061.1| hypothetical protein CNBD1090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258729|gb|EAL21414.1| hypothetical protein CNBD1090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226810|gb|AAW43270.1| mRNA catabolism, nonsense-mediated-related protein, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 434
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIE 141
+Y+GN+ + + LT+I G V A++I D+ + + FV + A+ +
Sbjct: 23 HLYVGNLSPRVTDYILTEIFAVAGPVVSAKIIQDRNFQHGGFNYGFVEYADMRSADQALT 82
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I EI+VN + ED+ Y V+VG+L+ V ++L K
Sbjct: 83 TLNGRKIFDAEIRVNWAYQ-------GNQNKEDTQHH---YHVFVGDLSPEVNDDVLSKA 132
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G + A+V+ + KS G+GF++F + DAE AI+S+N L + IRVN A
Sbjct: 133 FGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIASMNGEWLGSRAIRVNWA 189
>gi|119495558|ref|XP_001264561.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
gi|119412723|gb|EAW22664.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
Length = 477
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVED 135
P R +Y+G + + D L +I + G V+ ++I DK + + + FV
Sbjct: 86 PEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFNSKGYNYGFVEFDDPGA 145
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYKVYVGNLAKTV 193
A ++ LNG I EI+VN Q+ +N D S + ++VG+L+ V
Sbjct: 146 AERAMQTLNGRRIHQSEIRVNWA-----------YQSNSTNKEDTSSHFHIFVGDLSNEV 194
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
E+L + FS G V A+V+ T +S G+GFV F DAE A+++++ L + I
Sbjct: 195 NDEILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALNAMDGEWLGSRAI 254
Query: 254 RVNKA 258
R N A
Sbjct: 255 RCNWA 259
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 16/157 (10%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TP ++ Y+GN+ ++L + G V + + D R FAF+ M T E+
Sbjct: 304 TP-QWQTTCYVGNLTPYTTQNDLVPLFHNFGYVLETRLQAD------RGFAFIKMDTHEN 356
Query: 136 ANAVIEKLNGTEIGGREIKVNITE--KPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAK 191
A I +LNG + GR +K + + P Q D Q +S F SP Y G
Sbjct: 357 AAMAICQLNGYNVNGRPLKCSWGKDRPPTGQFDNFSGQQPNSPFNSSPATYFPQYGGPGA 416
Query: 192 TVTSEMLKKC--FSEKGQVLSAKVLRVPGTSKSSGFG 226
+T + E+G + + P +++GFG
Sbjct: 417 PITPQGPTPAGRGWEQGGMTGQGYGQAP---QNAGFG 450
>gi|50344898|ref|NP_001002121.1| poly(U)-binding-splicing factor PUF60-B [Danio rerio]
gi|47940403|gb|AAH71467.1| Poly-U binding splicing factor b [Danio rerio]
Length = 502
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 70 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 129
Query: 143 LNGTEIGGREIKVNITEKP--LVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+N +GGR IKV +P + Q + Q AE++ + ++YV ++ ++ + +K
Sbjct: 130 MNSVMLGGRNIKVG---RPGSIGQAQPIIEQLAEEARAYN---RIYVASIHPDLSDDDIK 183
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ S + R P T K GFGF+ + + + A+SS+N L GQ +RV KA
Sbjct: 184 SVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 242
>gi|405119959|gb|AFR94730.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Cryptococcus neoformans var. grubii H99]
Length = 434
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIE 141
+Y+GN+ + + LT+I G V A++I D+ + + FV + A+ +
Sbjct: 23 HLYVGNLSPRVTDYILTEIFAVAGPVVSAKIIQDRNFQHGGFNYGFVEYADMRSADQALT 82
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I EI+VN + ED+ Y V+VG+L+ V ++L K
Sbjct: 83 TLNGRKIFDAEIRVNWAYQ-------GNQNKEDTQHH---YHVFVGDLSPEVNDDVLSKA 132
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G + A+V+ + KS G+GF++F + DAE AI+S+N L + IRVN A
Sbjct: 133 FGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIASMNGEWLGSRAIRVNWA 189
>gi|357156104|ref|XP_003577343.1| PREDICTED: nucleolysin TIAR-like [Brachypodium distachyon]
Length = 451
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 15/181 (8%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S R VY+GNI + + L ++ Q G VE ++I + + F FV A
Sbjct: 73 SSTCRSVYVGNIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKS----SFGFVDYYDRRSAA 128
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
I LNG ++ G+ IKVN + Q ED++ + ++VG+L VT
Sbjct: 129 LAIVSLNGRQLFGQPIKVNWA--------YASTQREDTS---GHFNIFVGDLCPEVTDAA 177
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L FS A+V+ T +S GFGFV+F +++DA+ AI+ LN L ++IR N
Sbjct: 178 LFAFFSAYSTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINELNGKWLGNRQIRCNW 237
Query: 258 A 258
A
Sbjct: 238 A 238
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 27/210 (12%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S+ DT F +++G++ + + L + A V++D+ TGRSR F
Sbjct: 149 AYASTQREDTSGHF--NIFVGDLCPEVTDAALFAFFSAYSTCSDARVMWDQKTGRSRGFG 206
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNIT--------------EKPLVQ-VDLSLLQ 171
FV + +DA I +LNG +G R+I+ N K +V+ ++ S
Sbjct: 207 FVSFRNQQDAQTAINELNGKWLGNRQIRCNWATKGANAGEEKQNTDSKGMVELINGSSEA 266
Query: 172 AEDSNFVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
+++ D P VYVGNL + S + + F +L A + ++ GF
Sbjct: 267 GKENANEDGPENNPQYTTVYVGNLPHDINSNDVHRFF----HLLGAGSIEEVRVTRDKGF 322
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
GFV +S+ E+A AI + N L+ G++I+
Sbjct: 323 GFVRYSTHEEAALAIQTGNGQLVGGRQIKC 352
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGA--VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+P +I+++++ + GA +E+ V DK F FV T E+A I+
Sbjct: 285 VYVGNLPHDINSNDVHRFFHLLGAGSIEEVRVTRDK------GFGFVRYSTHEEAALAIQ 338
Query: 142 KLNGTEIGGREIKVNITEKP 161
NG +GGR+IK + KP
Sbjct: 339 TGNGQLVGGRQIKCSWGSKP 358
>gi|402079107|gb|EJT74372.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 482
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + D L +I + G V+ ++I DK + + FV A
Sbjct: 82 PEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK-NAKGFNYGFVEYDDPGAA 140
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ ++ LNG + EI+VN Q + + + SN + ++VG+L+ V E
Sbjct: 141 DRAMQTLNGRRVHQSEIRVNWA----YQSANTTTKEDTSNH----FHIFVGDLSNEVNDE 192
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR N
Sbjct: 193 VLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCN 252
Query: 257 KA 258
A
Sbjct: 253 WA 254
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 84 VYIGNI-PRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
Y+GN+ P ND L + Q G V ++ D R FAF+ M T E+A + I
Sbjct: 306 CYVGNLTPYTTAND-LVPLFQNFGYVVESRFQSD------RGFAFIKMDTHENATSAICN 358
Query: 143 LNGTEIGGREIKVNI-----TEKPLVQVDLS 168
LNG + GR +K + T P V D S
Sbjct: 359 LNGYNVNGRPLKCSWGKDKNTASPQVGFDPS 389
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+++L ++ ++G V+ D+ G+SR F FV + EDA ++++
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSL---LQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG E+ G+ + V +K + Q +L +D +YV NL + E L+
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E L++ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGDEMDDEKLRELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G +S +V+ KS GFGFV+F EDA+ A+ +N + G+ + V +A
Sbjct: 212 SKYGNAMSIRVM-TDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRA 266
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ +++ L + GA+ V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGQPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|255576617|ref|XP_002529199.1| nucleolysin tia-1, putative [Ricinus communis]
gi|223531377|gb|EEF33213.1| nucleolysin tia-1, putative [Ricinus communis]
Length = 422
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + L ++ G VE ++I + + + F+ A I
Sbjct: 52 CRSVYVGNIHTQVTEPLLQEVFASTGPVESCKLIRKEKS----SYGFIHYFDRRSAALAI 107
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG + G+ IKVN + Q ED++ Y ++VG+L+ VT L
Sbjct: 108 LSLNGRHLFGQPIKVNWA--------YASGQREDTS---GHYNIFVGDLSPEVTDATLFA 156
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F +++DA++AI+ L L ++IR N A
Sbjct: 157 CFSVYHSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 214
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 94/213 (44%), Gaps = 32/213 (15%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S DT + +++G++ + + L + + A V++D+ TGRSR F
Sbjct: 125 AYASGQREDTSGHY--NIFVGDLSPEVTDATLFACFSVYHSCSDARVMWDQKTGRSRGFG 182
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFV-------- 178
FV + +DA + I L G +G R+I+ N K D Q+ D+ V
Sbjct: 183 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGATSNDDK--QSSDAKSVVELTNGSS 240
Query: 179 ---------DSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSS 223
D+P VYVGNLA VT L + F L A V+ +
Sbjct: 241 EEGKETANNDAPENNPQYTTVYVGNLAPEVTQLDLHRHF----HSLGAGVIEEVRVQRDK 296
Query: 224 GFGFVTFSSEEDAEAAISSLN-NSLLEGQRIRV 255
GFGFV FS+ +A AI N S+L G++I+
Sbjct: 297 GFGFVRFSTHAEAALAIQMGNTQSILYGKQIKC 329
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 89 IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI 148
+P+ + DE+ + G VE ++I DK TG+S + FV +DA I LNG +
Sbjct: 30 LPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKAINTLNGLRL 89
Query: 149 GGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQV 208
+ IKV+ +P Q +D+N +YV L KT+T + L+ F G++
Sbjct: 90 QAKTIKVSYA-RPSSQA------IKDAN-------LYVSGLPKTMTQQDLEGLFEAHGRI 135
Query: 209 LSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250
+++++L P T +S G GFV F +AE AI+ LN + +G
Sbjct: 136 ITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKG 177
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 34/206 (16%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + +L + + HG + + +++D TG+SR FV +A I +L
Sbjct: 111 LYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITEL 170
Query: 144 NGTEIGGR--EIKVNITEKPLVQVDLSLLQA---------------EDSNFVDSP----- 181
NG G I V P +L QA + + F SP
Sbjct: 171 NGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGADP 230
Query: 182 ------------YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
+ ++V NLA +L + F G V + KV+R T+K GFGFVT
Sbjct: 231 MGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFVT 290
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRV 255
+ ++A AI+ LN L G+ ++V
Sbjct: 291 MAHYDEAVVAIAQLNGYCLGGRVLQV 316
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
DS + V L +T+T + +K FS G+V S K++R T +S G+GFV + +DAE
Sbjct: 20 DSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEK 79
Query: 239 AISSLNNSLLEGQRIRVNKA 258
AI++LN L+ + I+V+ A
Sbjct: 80 AINTLNGLRLQAKTIKVSYA 99
>gi|22208507|gb|AAM94322.1| putative oligouridylate binding protein [Sorghum bicolor]
Length = 581
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 25/207 (12%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S+ DT F +++G++ + + L + A V++D+ TGRSR F
Sbjct: 139 AYTSTQREDTSGHF--NIFVGDLCPEVTDATLFAFFSGYSTCSDARVMWDQKTGRSRGFG 196
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNIT--------EKPLVQVDLSLLQAEDSNFV 178
FV + +DA + I LNG +G R+I+ N EK +V + L +
Sbjct: 197 FVSFRNQQDAQSAINDLNGKWLGNRQIRCNWATKGANAGEEKQIVDSKVDLTNGTSESGK 256
Query: 179 DSPYK-----------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGF 227
++P + VYVGNL T+ + F G S + +RV ++ GFGF
Sbjct: 257 ENPNEDGPESNPQFTTVYVGNLPHEATNNDVHLFFHSLG-AGSIEEVRV---TRDKGFGF 312
Query: 228 VTFSSEEDAEAAISSLNNSLLEGQRIR 254
V +S+ E+A AI N L+ G++I+
Sbjct: 313 VRYSTHEEAAQAIQMANGQLIGGRQIK 339
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 15/181 (8%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S R VY+GNI + + L ++ Q G VE ++I + + F F+ A
Sbjct: 63 SSTCRSVYVGNISLQVTDTVLQEVFQSIGPVEGCKLIRKEKS----SFGFIDYYDRRYAA 118
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
I LNG + G+ IKVN + Q ED++ + ++VG+L VT
Sbjct: 119 LAILSLNGRPLYGQPIKVNWA--------YTSTQREDTS---GHFNIFVGDLCPEVTDAT 167
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L FS A+V+ T +S GFGFV+F +++DA++AI+ LN L ++IR N
Sbjct: 168 LFAFFSGYSTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGNRQIRCNW 227
Query: 258 A 258
A
Sbjct: 228 A 228
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGA--VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+P N+++ GA +E+ V DK F FV T E+A I+
Sbjct: 273 VYVGNLPHEATNNDVHLFFHSLGAGSIEEVRVTRDK------GFGFVRYSTHEEAAQAIQ 326
Query: 142 KLNGTEIGGREIKVNI 157
NG IGGR+IK I
Sbjct: 327 MANGQLIGGRQIKTTI 342
>gi|392570008|gb|EIW63181.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 126
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 53/76 (69%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
KVYVGNL+ T + L+ FS GQ+L + V+R T +S GFGFVTFSS +A+ AISS
Sbjct: 4 KVYVGNLSWNTTDDSLRSAFSNYGQILDSIVMRDRDTGRSRGFGFVTFSSSGEAQTAISS 63
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+RI+VN A
Sbjct: 64 LNEQELDGRRIKVNLA 79
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ N +D L +G + + V+ D+ TGRSR F FV + +A I
Sbjct: 4 KVYVGNLSWNTTDDSLRSAFSNYGQILDSIVMRDRDTGRSRGFGFVTFSSSGEAQTAISS 63
Query: 143 LNGTEIGGREIKVNI 157
LN E+ GR IKVN+
Sbjct: 64 LNEQELDGRRIKVNL 78
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+++L ++ ++G V+ D+ G+SR F FV + EDA ++++
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDLSL---LQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG E+ G+ + V +K + Q +L +D +YV NL + E L+
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 312 KEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E L++ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGDEMDDEKLRELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G +S +V+ KS GFGFV+F EDA+ A+ +N + G+ + V +A
Sbjct: 212 SKYGNAMSIRVM-TDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRA 266
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ +++ L + GA+ V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGQPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|189234753|ref|XP_974490.2| PREDICTED: similar to STE20-like kinase (yeast) [Tribolium
castaneum]
Length = 1819
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 6/178 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ + +D T + + FAFV + E A +E+
Sbjct: 99 RVYVGSISFELKEDTIRQSFLPFGPIKSINMSWDPVTQKHKGFAFVEYEIPEAAQLALEQ 158
Query: 143 LNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+NG IGGR IKV + P Q + +Q E + ++YV ++ +T + +K
Sbjct: 159 MNGVMIGGRNIKVVGRPSNMPQAQAVIDEIQEEAKQY----NRIYVASIHPDLTEDDIKS 214
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G ++ K+ + K G+GF+ + + + A AI+S+N L GQ +RV +A
Sbjct: 215 VFEAFGPIIYCKLAQGSSGHKHKGYGFIEYETAQAANEAIASMNLFDLGGQYLRVGRA 272
>gi|384491350|gb|EIE82546.1| hypothetical protein RO3G_07251 [Rhizopus delemar RA 99-880]
Length = 348
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 11/198 (5%)
Query: 66 TASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI----YDKYTGR 121
+A +S+V + A +Y+GN+ + + + L +I G V ++I ++ +
Sbjct: 2 SAMDVTSNVAETTNPATTIYVGNLDQRVTDTMLNEIFTTVGQVVSVKIISVRKHNNFG-- 59
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSL-LQAEDSNFVDS 180
+ + FV A I+ +NG +I EI+ N + P ++ L + ED+ +
Sbjct: 60 AVNYGFVEFADPRVAEQAIQDMNGRKIFNYEIRANWAQ-PSANINPPLQMTKEDTT---N 115
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240
+ V+VG+LA + E L + FSE G + A V+ P + KS GFGFV F + DAE AI
Sbjct: 116 HFHVFVGDLAAEINDEKLAQAFSEFGTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERAI 175
Query: 241 SSLNNSLLEGQRIRVNKA 258
+++N L + IR N A
Sbjct: 176 ATMNGEWLGTRPIRCNWA 193
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 21/186 (11%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT + F V++G++ I++++L + E G + +A V++D +G+SR F FV +
Sbjct: 112 DTTNHF--HVFVGDLAAEINDEKLAQAFSEFGTMSEAHVMWDPLSGKSRGFGFVAFRDKT 169
Query: 135 DANAVIEKLNGTEIGGREIKVNI-TEK---------PLVQVDLSLLQAEDSNFVDSPYKV 184
DA I +NG +G R I+ N T+K P Q+ ++ + +V S +
Sbjct: 170 DAERAIATMNGEWLGTRPIRCNWATQKGQTAMPAPQPGQQLPYEVVVQQTPAYVTS---I 226
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
YVGN+ V+ L + F G V K GF FV + E+A AI L
Sbjct: 227 YVGNIPLNVSQNDLVQPFQRFGYVQEVKF------QADRGFAFVKMDTHENAANAIVHLQ 280
Query: 245 NSLLEG 250
N + G
Sbjct: 281 NMSING 286
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TP+ + +Y+GNIP N+ ++L + Q G V++ + D R FAFV M T E+
Sbjct: 219 TPA-YVTSIYVGNIPLNVSQNDLVQPFQRFGYVQEVKFQAD------RGFAFVKMDTHEN 271
Query: 136 ANAVIEKLNGTEIGGREIKV 155
A I L I G K+
Sbjct: 272 AANAIVHLQNMSINGNVTKL 291
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 10/171 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D+D++ ++ G + A+V+ D+ G+SR F FV + E A ++ L
Sbjct: 193 VYIKNFGDELDDDKIRELFDPFGKIISAKVMTDE-IGKSRGFGFVSYEEPEAAEKAVDNL 251
Query: 144 NGTEIGGREI--KVNITEKPLVQVDLS----LLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+GG ++ +K Q +L ++ E N +YV NL V E
Sbjct: 252 NGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQG-VNLYVKNLDDVVDDER 310
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS+ G + SA+V+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 LRKEFSQFGTITSARVMSEGGRSK--GFGFVCFSSPEEATKAVTEMNGRII 359
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G V V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I GR I++ +++ D SL ++ N V++ NL K++ ++
Sbjct: 66 ERALDTMNFDTIKGRPIRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS K+ SK G+GFV F +EE A AI +N LL G+++ V
Sbjct: 114 ALYDTFSAFGNILSCKIASDENGSK--GYGFVHFETEEAARQAIEKVNGMLLNGKKVYVG 171
Query: 257 K 257
K
Sbjct: 172 K 172
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +D++ L K + G + A V+ + GRS+ F FV + E+A + ++
Sbjct: 297 LYVKNLDDVVDDERLRKEFSQFGTITSARVMSE--GGRSKGFGFVCFSSPEEATKAVTEM 354
Query: 144 NGTEIGGREIKVNITEK 160
NG I + + V + ++
Sbjct: 355 NGRIIVSKPLYVALAQR 371
>gi|110756942|ref|XP_395357.3| PREDICTED: nucleolysin TIAR [Apis mellifera]
gi|340713958|ref|XP_003395500.1| PREDICTED: nucleolysin TIAR-like [Bombus terrestris]
gi|350421173|ref|XP_003492759.1| PREDICTED: nucleolysin TIAR-like [Bombus impatiens]
gi|380025693|ref|XP_003696603.1| PREDICTED: nucleolysin TIAR-like [Apis florea]
Length = 392
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ ++ + L + + GAV+ ++I + + +AFV + A +
Sbjct: 8 RTLYVGNLDTSVSEELLCALFSQIGAVKGCKIIREP---GNDPYAFVEFTNHQCAATALA 64
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +E+KVN P Q L + SN + ++VG+L+ + ++ LK+
Sbjct: 65 AMNKRSFLNKEMKVNWATSPGNQPKL-----DTSNH----HHIFVGDLSPEIETQTLKEA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F+ G++ + +++R P T KS G+ FV+F + +AEAAI+++N L + IR N
Sbjct: 116 FAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAMNGQWLGSRSIRTN 170
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 172 AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+E+SN P +YVGNL +V+ E+L FS+ G V K++R PG + FV F+
Sbjct: 2 SEESN----PRTLYVGNLDTSVSEELLCALFSQIGAVKGCKIIREPGNDP---YAFVEFT 54
Query: 232 SEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ + A A++++N + ++VN A
Sbjct: 55 NHQCAATALAAMNKRSFLNKEMKVNWA 81
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY G I +D +TK G ++ V DK +AF+ T E A IE
Sbjct: 208 VYCGGFTNGITDDLITKTFSPFGTIQDIRVFKDK------GYAFIKFTTKEAATHAIEST 261
Query: 144 NGTEIGGREIKV 155
+ TEI G +K
Sbjct: 262 HNTEINGSIVKC 273
>gi|410900506|ref|XP_003963737.1| PREDICTED: nucleolysin TIAR-like isoform 2 [Takifugu rubripes]
Length = 408
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
S S DT + F V++G++ +I +++ G + A V+ D TG+S+ + F
Sbjct: 108 SPSCQKKDTSNHF--HVFVGDLSPDITTEDIRAAFAPFGHISDARVLKDMATGKSKGYGF 165
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD-----SP 181
V DA I K+ G + GR+I+ N T KP ++ F D SP
Sbjct: 166 VSFYNKLDAENAISKMAGQWLQGRQIRTNWATRKPPAPKSFQDNGSKHLKFDDIVTQSSP 225
Query: 182 YK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
+ VY G + +T ++++ FS GQ++ +V G+ FV FSS + A A
Sbjct: 226 HNCTVYCGGIQSGLTEHLMQQTFSPFGQIMEIRVF------PDKGYSFVRFSSHDSAAHA 279
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N +++EG ++
Sbjct: 280 IVSVNGTVIEGNLVKC 295
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 34/202 (16%)
Query: 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYD----------------------- 116
++ +Y+GN+ R++ + ++ + G + ++I D
Sbjct: 6 LSKTLYVGNLSRDVTEILILQLFSQIGPCKSCKMITDVNNRDRLLEWLQLNNFYVWLCCL 65
Query: 117 KYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN 176
++T S + FV +DA + +N +I G+E+KVN P Q + + SN
Sbjct: 66 QHT-SSDPYCFVEFVDHKDAASARATMNKRKILGKEVKVNWATSPSCQ------KKDTSN 118
Query: 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
+ V+VG+L+ +T+E ++ F+ G + A+VL+ T KS G+GFV+F ++ DA
Sbjct: 119 H----FHVFVGDLSPDITTEDIRAAFAPFGHISDARVLKDMATGKSKGYGFVSFYNKLDA 174
Query: 237 EAAISSLNNSLLEGQRIRVNKA 258
E AIS + L+G++IR N A
Sbjct: 175 ENAISKMAGQWLQGRQIRTNWA 196
>gi|358339509|dbj|GAA27913.2| poly(U)-binding-splicing factor PUF60-B [Clonorchis sinensis]
Length = 512
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I + DEL + G ++ + +D + + FAFV + E A+ +E+
Sbjct: 93 RIYVGSISFEVGEDELRRTFGPFGPIKSVALSWDATLQKHKGFAFVEFEVPEAASLALEQ 152
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
+NG + GR +KV +P L++E + ++ +VYV ++ +T ++ F
Sbjct: 153 MNGHTLAGRTLKVG---RPSNAPQTGNLESELRSDENTRCRVYVASVHPELTEADMQTVF 209
Query: 203 SEKGQVLSAKVL---RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G+V + + PG + GFG++ F SEE+A AA++S+N L G ++RV +A
Sbjct: 210 EAFGKVEECLLYPDPKCPG--RHRGFGYIYFHSEEEAIAAVTSMNGFDLAGLQLRVCRA 266
>gi|327299776|ref|XP_003234581.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
gi|326463475|gb|EGD88928.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
Length = 507
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 10/183 (5%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVED 135
P R +Y+G + + D L +I + G V+ ++I DK + + + F+
Sbjct: 97 PEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSKGLNYGFIEYDDPGA 156
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ LNG + EI+VN Q + + + S+F ++VG+L+ V
Sbjct: 157 AERAMQTLNGRRVHQSEIRVNWA----YQSNTASKEDTSSHF-----HIFVGDLSNEVND 207
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
E+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR
Sbjct: 208 EVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRC 267
Query: 256 NKA 258
N A
Sbjct: 268 NWA 270
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
++ Y+GN+ ++L + Q G V + D R FAFV M T E+A
Sbjct: 317 QWQTTCYVGNLTPYTTQNDLIPLFQNFGYVVETRFQAD------RGFAFVKMDTHENAAM 370
Query: 139 VIEKLNGTEIGGREIKVNITE--KPLVQVD-LSLLQAEDSNFVD--SPYKVYVGNLAKTV 193
I +LNG + GR +K + + P Q D S Q+ + F SPY G +
Sbjct: 371 AICQLNGYNVNGRPLKCSWGKDRPPTGQFDAYSPQQSGNPAFNSGTSPYFPQYGGPGGPM 430
Query: 194 TSE 196
T +
Sbjct: 431 TPQ 433
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 8/171 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N +D+ +L ++ + +G + A V+ D+ TG+SR F FV + ++A +++L
Sbjct: 194 VYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQ-TGKSRGFGFVSFENPDNAEQAVKEL 252
Query: 144 NGTEIG-GREIKVNITEKPLVQV-DLSL----LQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
N E+G G++I V +K ++ DL L+ E +YV NL + E
Sbjct: 253 NDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQG-VNLYVKNLDDVIDDER 311
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L++ F+ G + SAKV+ ++S GFGFV FSS E+A A++ +N ++
Sbjct: 312 LRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRII 362
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + + G V V D + RS +A+V DA ++ +
Sbjct: 13 LYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + R +++ +++ D SL ++ N V++ NL K + ++ + FS
Sbjct: 73 NFEPLKNRPMRIMWSQR-----DPSLRKSGVGN-------VFIKNLHKDIDNKAIFDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS +V S G+GFV F +EE A AI+ +N LL +++ V K
Sbjct: 121 AFGNILSCRVA-TDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGK 173
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L + +G + A+V+ D RS+ F FV + E+A + ++
Sbjct: 298 LYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEM 357
Query: 144 NGTEIGGREIKVNITEK 160
NG I + + V + ++
Sbjct: 358 NGRIIVQKPLYVALAQR 374
>gi|389742195|gb|EIM83382.1| polyadenylate-binding protein [Stereum hirsutum FP-91666 SS1]
Length = 422
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 78 SEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVE 134
+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV +
Sbjct: 10 AEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMR 69
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
A ++ LNG +I EI+VN + ED++ + + V+VG+L+ V
Sbjct: 70 AAETALQTLNGRKIFDTEIRVNWAYQ-------GQQNKEDTS---NHFHVFVGDLSPEVN 119
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
++L K F+ G + A+V+ + KS G+GF+ F + DAE AI+++N L + IR
Sbjct: 120 DDVLAKAFAAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR 179
Query: 255 VNKA 258
VN A
Sbjct: 180 VNWA 183
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ +L I E+GA+ A V+ D G+S+ F FV VEDA +E L
Sbjct: 205 VYVKNLFEATTEADLKSIFGEYGAITSAVVMRD-VDGKSKGFGFVNFANVEDAAKAVEAL 263
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEML 198
NG G+E V +K + +L L + + + ++ K +Y+ NL +V E L
Sbjct: 264 NGKNFDGKEWYVGKAQKK-SERELELKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEEL 322
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ FSE G + S KV+R P + S G GFV FS E A A+ +N ++ G+ + V
Sbjct: 323 RELFSEFGTITSCKVMRDP-SGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLYV 378
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 12/179 (6%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A V+I N+ + ID+ L G + ++ D +G+S+ FV ++ E A I
Sbjct: 111 AANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDA-SGQSKGHGFVQFESEESAQNAI 169
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+KLNG I +++ V ++ Q S L N VYV NL + T LK
Sbjct: 170 DKLNGMLINDKQVYVGPFQR--KQDRESALSGTKFN------NVYVKNLFEATTEADLKS 221
Query: 201 CFSEKGQVLSAKVLR-VPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E G + SA V+R V G KS GFGFV F++ EDA A+ +LN +G+ V KA
Sbjct: 222 IFGEYGAITSAVVMRDVDG--KSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKA 278
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 13/194 (6%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+ + + +++S PS +Y+G++ ++++ +L + + V + D T +
Sbjct: 4 IPQTPTNDAAASGANPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQ 63
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP 181
S + +V DA I+ LN T + G+ I++ + + D S ++ +N
Sbjct: 64 SLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSIR-----DPSARKSGAAN----- 113
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
V++ NL K + + L FS G +LS K+ + +S G GFV F SEE A+ AI
Sbjct: 114 --VFIKNLDKAIDHKALFDTFSAFGNILSCKIA-TDASGQSKGHGFVQFESEESAQNAID 170
Query: 242 SLNNSLLEGQRIRV 255
LN L+ +++ V
Sbjct: 171 KLNGMLINDKQVYV 184
>gi|194701250|gb|ACF84709.1| unknown [Zea mays]
Length = 424
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GN+ N+ L ++ Q G VE+ ++I + + F FV A I
Sbjct: 47 CRSVYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKS----SFGFVDYYDRRSAALAI 102
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
L+G I G+ IKVN + Q ED++ + ++VG+L+ V L
Sbjct: 103 MTLHGRHIYGQAIKVNWA--------YASTQREDTS---GHFHIFVGDLSSEVNDATLYA 151
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S G+GFV+F ++++AE AI+ + L ++IR N A
Sbjct: 152 CFSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWA 209
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A+ A +S+ DT F +++G++ +++ L + + A V++D TG
Sbjct: 114 AIKVNWAYASTQREDTSGHF--HIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTG 171
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT------EKPLVQ---------- 164
RSR + FV + ++A I ++ G +G R+I+ N EKP
Sbjct: 172 RSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNSEEKPETDNHNAVVLTNG 231
Query: 165 ------VDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
D S N ++P VYVGNL V + L + F G V + + +RV
Sbjct: 232 SSTNSATDASQDAGSKENPENNPDCTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEIRV 290
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ GFGFV +S+ +A AI N ++ G+ I+
Sbjct: 291 ---QQDKGFGFVRYSTHGEAALAIQMANGLVVRGKSIKC 326
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+ ++ DEL + G A+E+ V DK F FV T +A I+
Sbjct: 259 VYVGNLGHEVNRDELHRHFYNLGVGAIEEIRVQQDK------GFGFVRYSTHGEAALAIQ 312
Query: 142 KLNGTEIGGREIKVNITEKP 161
NG + G+ IK + KP
Sbjct: 313 MANGLVVRGKSIKCSWGNKP 332
>gi|383863609|ref|XP_003707272.1| PREDICTED: nucleolysin TIAR-like [Megachile rotundata]
Length = 392
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ ++ + L + + GAV+ ++I + + +AFV + A +
Sbjct: 8 RTLYVGNLDSSVSEELLCALFSQIGAVKGCKIIREP---GNDPYAFVEFTNHQCAATALA 64
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+N +E+KVN P Q L + SN + ++VG+L+ + ++ LK+
Sbjct: 65 AMNKRSFLNKEMKVNWATSPGNQPKL-----DTSNH----HHIFVGDLSPEIETQTLKEA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
F+ G++ + +++R P T KS G+ FV+F + +AEAAI+++N L + IR N
Sbjct: 116 FAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAMNGQWLGSRSIRTN 170
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 172 AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
+E+SN P +YVGNL +V+ E+L FS+ G V K++R PG + FV F+
Sbjct: 2 SEESN----PRTLYVGNLDSSVSEELLCALFSQIGAVKGCKIIREPGNDP---YAFVEFT 54
Query: 232 SEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ + A A++++N + ++VN A
Sbjct: 55 NHQCAATALAAMNKRSFLNKEMKVNWA 81
>gi|326480772|gb|EGE04782.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton equinum CBS 127.97]
Length = 507
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 10/183 (5%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVED 135
P R +Y+G + + D L +I + G V+ ++I DK + + + F+
Sbjct: 97 PEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSKGLNYGFIEYDDPGA 156
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ LNG + EI+VN Q + + + S+F ++VG+L+ V
Sbjct: 157 AERAMQTLNGRRVHQSEIRVNWA----YQSNTASKEDTSSHF-----HIFVGDLSNEVND 207
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
E+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR
Sbjct: 208 EVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRC 267
Query: 256 NKA 258
N A
Sbjct: 268 NWA 270
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
++ Y+GN+ ++L + Q G V + D R FAFV M T E+A
Sbjct: 317 QWQTTCYVGNLTPYTTQNDLIPLFQNFGYVVETRFQAD------RGFAFVKMDTHENAAM 370
Query: 139 VIEKLNGTEIGGREIKVNITE--KPLVQVD-LSLLQAEDSNFVD--SPYKVYVGNLAKTV 193
I +LNG + GR +K + + P Q D S Q+ + F SPY G +
Sbjct: 371 AICQLNGYNVNGRPLKCSWGKDRPPTGQFDAYSPQQSGNPAFNSGTSPYFPQYGGPGGPM 430
Query: 194 TSE 196
T +
Sbjct: 431 TPQ 433
>gi|326476993|gb|EGE01003.1| nucleolin protein Nsr1 [Trichophyton equinum CBS 127.97]
Length = 479
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 104/202 (51%), Gaps = 8/202 (3%)
Query: 63 AEETAS--SSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
AEE A + + VD P + +++GN+ N+D + L +E G + ++ D+ +G
Sbjct: 217 AEEEAEPVAKKAKVDVPEGASANLFVGNLSWNVDEEWLRSEFEEFGELSGTRIVTDRESG 276
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAED--SNFV 178
RSR F +V VEDA E+ GR++ ++ +A++ +F
Sbjct: 277 RSRGFGYVEFVNVEDAVKAHGAKKDAELDGRKMNLDYANARANGNANPRERADNRAKSFG 336
Query: 179 D--SPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
D SP +++GN++ + M+++ FS+ G + ++ P + + GFG+V FSS +
Sbjct: 337 DQTSPESDTLFIGNISFSADENMVQELFSKYGTIQGIRLPTDPDSGRPKGFGYVQFSSVD 396
Query: 235 DAEAAISSLNNSLLEGQRIRVN 256
+A AA+ + N + L G+ IR++
Sbjct: 397 EARAALEAENGADLGGRSIRLD 418
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 46/75 (61%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGNI + D + + ++ ++G ++ + D +GR + F +V +V++A A +E
Sbjct: 346 LFIGNISFSADENMVQELFSKYGTIQGIRLPTDPDSGRPKGFGYVQFSSVDEARAALEAE 405
Query: 144 NGTEIGGREIKVNIT 158
NG ++GGR I+++ +
Sbjct: 406 NGADLGGRSIRLDFS 420
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 11/181 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N ++ L +I ++G + +++ D +G+S+ F F+ + DA IE++
Sbjct: 201 VYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDD-SGKSKGFGFIRFECHADAKRAIEEV 259
Query: 144 NGTEIGGREIKVNITEKP------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG + GGR+I V+ +K L Q + Q + + ++V NLA++ E
Sbjct: 260 NGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHG--MSLFVKNLAESTDDEH 317
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L+K F+ G V SAKV+ G K GFGFV+FSS E+A+ A+ ++ +L + + V+
Sbjct: 318 LRKIFAPFGTVTSAKVIVKGGRRK--GFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSY 375
Query: 258 A 258
A
Sbjct: 376 A 376
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ ++ +IDN EL + G + +V+ D+ + FV +T E A+ I+++
Sbjct: 109 VFVNHLDASIDNKELYDLFAGFGTILSCKVVSDENGPKGH--GFVHFETREAADKAIKEM 166
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG+ + R++ V ++P + + + E F + VYV N A T E L + FS
Sbjct: 167 NGSLVKERKVFVGQFKRPNQREEERRAKME--QFTN----VYVKNFADGTTDEYLLEIFS 220
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G + S K++ + KS GFGF+ F DA+ AI +N G++I V++A
Sbjct: 221 QYGPLSSVKIM-TDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRA 274
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R +S+S G+G+V F EDA A++++
Sbjct: 21 LYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTM 80
Query: 244 NNSLLEGQRIRV 255
N +L G+ +R+
Sbjct: 81 NFDVLHGKPVRI 92
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN + G + +V D+ + S+ + FV +T E AN I+K+
Sbjct: 83 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESN-SKGYGFVHFETEEAANNAIQKV 141
Query: 144 NGTEIGGREIKVNI------TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG + GR++ V EK L Q + VY+ N + E
Sbjct: 142 NGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMN------------VYIKNFGDDLDDEK 189
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L++ F + G++ SAKV+ T K GFGFV+F E+AE A++ LNN L G+ + V +
Sbjct: 190 LREMFEKYGKITSAKVM-ADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGR 248
Query: 258 A 258
A
Sbjct: 249 A 249
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 11/164 (6%)
Query: 81 ARR---VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
ARR VYI N ++D+++L ++ +++G + A+V+ D+ TG+ + F FV + E+A
Sbjct: 170 ARRFMNVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADE-TGKPKGFGFVSFEDPENAE 228
Query: 138 AVIEKLNGTEIGGREIKVNITEK-----PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKT 192
+ LN E+ G+ + V +K ++ L+ + N +YV NL +
Sbjct: 229 KAVNDLNNKELNGKVLYVGRAQKKSERAAELKRRFEQLKMDRINRYQG-VNLYVKNLDDS 287
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236
+ E L+K F+ G + SAKV+ +S GFGFV FS+ E+A
Sbjct: 288 IDDERLRKEFTPFGTITSAKVM-TDSNGRSKGFGFVCFSAPEEA 330
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
VT ML + FS G VLS +V R +S G+ +V F DAE A+ ++N +++G+
Sbjct: 4 VTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRP 63
Query: 253 IRV 255
IR+
Sbjct: 64 IRI 66
>gi|46139099|ref|XP_391240.1| hypothetical protein FG11064.1 [Gibberella zeae PH-1]
Length = 127
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
K+YVGNL+ T E L++ FSE G+V + ++R T ++ GFGFVTFS+EE A AA+ +
Sbjct: 3 KLYVGNLSWNTTDETLRQTFSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVDA 62
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+RIRVN A
Sbjct: 63 LNEQELDGRRIRVNVA 78
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+GN+ N ++ L + E G V + ++ D+ TGR+R F FV T E A A ++
Sbjct: 3 KLYVGNLSWNTTDETLRQTFSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVDA 62
Query: 143 LNGTEIGGREIKVNI 157
LN E+ GR I+VN+
Sbjct: 63 LNEQELDGRRIRVNV 77
>gi|413920410|gb|AFW60342.1| nucleolysin TIAR [Zea mays]
Length = 447
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 25/208 (12%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S+ DT F +++G++ + + L + A V++D+ TGRSR F
Sbjct: 147 AYTSTPREDTSGHF--NIFVGDLCPEVTDATLFAFFSGYSTCSDARVMWDQKTGRSRGFG 204
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL----------VQVDLSLLQAE--- 173
FV + +DA + I LNG +G R+I+ N K +VDLS +E
Sbjct: 205 FVSFRNQQDAQSAINDLNGKWLGNRQIRCNWATKGANAGEEKQILDTKVDLSNGSSESGK 264
Query: 174 DSNFVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGF 227
++ D P VYVGNL T + F G S + +RV ++ GFGF
Sbjct: 265 ENPNEDGPENNPQFTTVYVGNLPHEATMNDVHLFFHSLG-AGSIEEVRV---TRDKGFGF 320
Query: 228 VTFSSEEDAEAAISSLNNSLLEGQRIRV 255
V +S+ E+A AI N L+ G++I+
Sbjct: 321 VRYSTHEEAALAIQMGNGQLIGGRQIKC 348
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
S R VY+GNI + + L ++ Q G VE ++I + + F F+ A
Sbjct: 71 SSTCRSVYVGNIHLQVTDTVLQEVFQSIGPVEGCKLIRKEKS----SFGFIDYYDRRYAA 126
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
I LNG ++ G+ IKVN + D S + ++VG+L VT
Sbjct: 127 LAILSLNGRQLYGQPIKVNWAYTSTPREDTS-----------GHFNIFVGDLCPEVTDAT 175
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
L FS A+V+ T +S GFGFV+F +++DA++AI+ LN L ++IR N
Sbjct: 176 LFAFFSGYSTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGNRQIRCNW 235
Query: 258 A 258
A
Sbjct: 236 A 236
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGA--VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+P +++ GA +E+ V DK F FV T E+A I+
Sbjct: 281 VYVGNLPHEATMNDVHLFFHSLGAGSIEEVRVTRDK------GFGFVRYSTHEEAALAIQ 334
Query: 142 KLNGTEIGGREIKVNITEKPLVQ 164
NG IGGR+IK + KP Q
Sbjct: 335 MGNGQLIGGRQIKCSWGSKPTPQ 357
>gi|357479383|ref|XP_003609977.1| RNA-binding protein [Medicago truncatula]
gi|355511032|gb|AES92174.1| RNA-binding protein [Medicago truncatula]
Length = 245
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + L ++ GA+E ++I + + + FV A I
Sbjct: 45 CRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKS----SYGFVDYFDRSSAAIAI 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG I G+ IKVN + Q ED++ + ++VG+L+ VT L
Sbjct: 101 VTLNGRNIFGQSIKVNWA--------YTRGQREDTS---GHFHIFVGDLSPEVTDATLYA 149
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F ++++A++AI+ L L ++IR N A
Sbjct: 150 CFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWA 207
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT F +++G++ + + L + + A V++D+ TGRSR F FV + +
Sbjct: 126 DTSGHF--HIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 183
Query: 135 DANAVIEKLNGTEIGGREIKVNITEK 160
+A + I L G +G R+I+ N K
Sbjct: 184 EAQSAINDLTGKWLGSRQIRCNWATK 209
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 13/187 (6%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
VDT F V++G++ IDN+ L +G + +A+VI D T +S+ + FV +
Sbjct: 128 VDTSKHF--HVFVGDLATEIDNNALKAAFAAYGEISEAKVIRDPQTMKSKGYGFVSFPSK 185
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGN 188
E A I +NG IG R+I+ N + + + + + + V + + VYVGN
Sbjct: 186 ESAEKAIAGMNGQLIGRRQIRTNWASRKPASAEEAHTKEQTFDEVFNATRADNTSVYVGN 245
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+ + T E L++ F+ G + ++ K G+ FV ++++E A AI +N +
Sbjct: 246 VHSSTTEEDLREAFASIGAISEVRIF------KQQGYAFVRYATKEAATRAIMQMNGKEI 299
Query: 249 EGQRIRV 255
GQ I+
Sbjct: 300 NGQNIKC 306
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+ V+VG+LA + + LK F+ G++ AKV+R P T KS G+GFV+F S+E AE AI+
Sbjct: 134 FHVFVGDLATEIDNNALKAAFAAYGEISEAKVIRDPQTMKSKGYGFVSFPSKESAEKAIA 193
Query: 242 SLNNSLLEGQRIRVNKA 258
+N L+ ++IR N A
Sbjct: 194 GMNGQLIGRRQIRTNWA 210
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+GN+ + ++L + GA+ + + + + +AFV T E A I ++
Sbjct: 241 VYVGNVHSSTTEEDLREAFASIGAISEVRIF------KQQGYAFVRYATKEAATRAIMQM 294
Query: 144 NGTEIGGREIKVNITEKP 161
NG EI G+ IK + P
Sbjct: 295 NGKEINGQNIKCSWGRTP 312
>gi|320585953|gb|EFW98632.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Grosmannia clavigera kw1407]
Length = 488
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 10/197 (5%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
++ +A++ P R +Y+G + + + D L +I + G V+ ++I DK +
Sbjct: 67 MSPTSAAAYGGRRSAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK-NAK 125
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP 181
+ FV A ++ LNG + EI+VN Q + + + +F
Sbjct: 126 GYNYGFVEYDDPGAAERAMQNLNGRRVHQSEIRVNWA----YQSNTTSKEDTSGHF---- 177
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
++VG+L+ V E+L + F+ G V A+V+ T +S G+GFV F DAE A+S
Sbjct: 178 -HIFVGDLSNEVNDEVLTQAFTSFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALS 236
Query: 242 SLNNSLLEGQRIRVNKA 258
S++ L + IR N A
Sbjct: 237 SMDGEWLGSRAIRCNWA 253
>gi|89272470|emb|CAJ83096.1| OTTXETP00000006403 [Xenopus (Silurana) tropicalis]
Length = 389
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFA 126
R +Y+GN+ R++ + ++ + G + ++I ++ R + +
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQTDSRRVGASVSFPVLPNTNNDPYC 67
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 117
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 118 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 177
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 178 WLGGRQIRTNWA 189
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 101 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 158
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 159 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 218
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G + +T +++++ F GQ+L +V G+ F+ FS+ + A A
Sbjct: 219 KNCTVYCGGIGSGLTEQLMRQTFGVFGQILEIRVF------PEKGYSFIRFSTHDSAAHA 272
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 273 IVSVNGTTIEGHVVKC 288
>gi|47221195|emb|CAG05516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 520
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV E A +E+
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 153
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ ++ + +
Sbjct: 154 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHPDLSDDDI 206
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P + + GFGF+ + + A A+SS+N L GQ +RV KA
Sbjct: 207 KSVFEAFGRIKSCMLARDPTSGRHRGFGFIEYEKPQSALDAVSSMNLFDLGGQYLRVGKA 266
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ ++ +D++ + + G ++ + D +GR R F F+
Sbjct: 179 IDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCMLARDPTSGRHRGFGFIEY 238
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + A + +N ++GG+ ++V P
Sbjct: 239 EKPQSALDAVSSMNLFDLGGQYLRVGKAVTP 269
>gi|226500040|ref|NP_001150056.1| LOC100283683 [Zea mays]
gi|195636346|gb|ACG37641.1| nucleolysin TIAR [Zea mays]
Length = 421
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 25/208 (12%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S+ DT F +++G++ + + L + A V++D+ TGRSR F
Sbjct: 147 AYTSTPREDTSGHF--NIFVGDLCPEVTDATLFAFFSGYSTCSDARVMWDQKTGRSRGFG 204
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL----------VQVDLSLLQAE--- 173
FV + +DA + I LNG +G R+I+ N K +VDLS +E
Sbjct: 205 FVSFRNQQDAQSAINDLNGKWLGNRQIRCNWATKGANAGEEKQILDTKVDLSNGSSESGK 264
Query: 174 ----DSNFVDSPY--KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGF 227
D ++P VYVGNL T + F G S + +RV ++ GFGF
Sbjct: 265 ENPNDDGPENNPQFTTVYVGNLPHEATMNDVHLFFHSLG-AGSIEEVRV---TRDKGFGF 320
Query: 228 VTFSSEEDAEAAISSLNNSLLEGQRIRV 255
V +S+ E+A AI N L+ G++I+
Sbjct: 321 VRYSTHEEAALAIQMGNGQLIGGRQIKC 348
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + + L ++ Q G VE ++I + + F F+ A I
Sbjct: 74 CRSVYVGNIHLQVTDTVLQEVFQSIGPVEGCKLIRKEKS----SFGFIDYYDRRYAALAI 129
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG ++ G+ IKVN + D S + ++VG+L VT L
Sbjct: 130 LSLNGRQLYGQPIKVNWAYTSTPREDTS-----------GHFNIFVGDLCPEVTDATLFA 178
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FS A+V+ T +S GFGFV+F +++DA++AI+ LN L ++IR N A
Sbjct: 179 FFSGYSTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGNRQIRCNWA 236
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGA--VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+P +++ GA +E+ V DK F FV T E+A I+
Sbjct: 281 VYVGNLPHEATMNDVHLFFHSLGAGSIEEVRVTRDK------GFGFVRYSTHEEAALAIQ 334
Query: 142 KLNGTEIGGREIKVNITEKPLVQ 164
NG IGGR+IK + KP Q
Sbjct: 335 MGNGQLIGGRQIKCSWGSKPTPQ 357
>gi|239608318|gb|EEQ85305.1| nucleolin protein Nsr1 [Ajellomyces dermatitidis ER-3]
gi|327349518|gb|EGE78375.1| nucleolin protein Nsr1 [Ajellomyces dermatitidis ATCC 18188]
Length = 512
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+ N+D + L +E G + ++ D+ +GRSR F +V DA
Sbjct: 263 LFVGNLSWNVDEEWLRSEFEEFGELSGVRIVTDRDSGRSRGFGYVEFVNAADAAKAHAAK 322
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK--VYVGNLAKTVTSEMLK 199
E+ GR++ ++ Q+ NF D SP +++GN++ + M+
Sbjct: 323 KDVELDGRKLNIDFANARSNAAPRERAQSRAQNFGDQASPESDTLFIGNISFSADENMIS 382
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ FSE G +L ++ P + + GFG+V FSS ++A +A +LN + L G+ +R++
Sbjct: 383 EAFSEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSAFQTLNGADLGGRPMRLD 439
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 46/75 (61%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGNI + D + +++ EHG++ + D +GR + F +V +V++A + + L
Sbjct: 367 LFIGNISFSADENMISEAFSEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSAFQTL 426
Query: 144 NGTEIGGREIKVNIT 158
NG ++GGR ++++ +
Sbjct: 427 NGADLGGRPMRLDFS 441
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 167 LSLLQAEDSNFVDSPYK----------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
L +AED + +P K ++VGNL+ V E L+ F E G++ +++
Sbjct: 236 LQKRKAEDDEELAAPKKTKVESSEGGNLFVGNLSWNVDEEWLRSEFEEFGELSGVRIVTD 295
Query: 217 PGTSKSSGFGFVTF 230
+ +S GFG+V F
Sbjct: 296 RDSGRSRGFGYVEF 309
>gi|226505614|ref|NP_001148740.1| LOC100282356 [Zea mays]
gi|195621754|gb|ACG32707.1| mRNA 3-UTR binding protein [Zea mays]
gi|224030425|gb|ACN34288.1| unknown [Zea mays]
gi|413921566|gb|AFW61498.1| mRNA 3-UTR binding protein [Zea mays]
Length = 449
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GN+ N+ L ++ Q G VE+ ++I + + F FV A I
Sbjct: 72 CRSVYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKS----SFGFVDYYDRRSAALAI 127
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
L+G I G+ IKVN + Q ED++ + ++VG+L+ V L
Sbjct: 128 MTLHGRHIYGQAIKVNWA--------YASTQREDTS---GHFHIFVGDLSSEVNDATLYA 176
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S G+GFV+F ++++AE AI+ + L ++IR N A
Sbjct: 177 CFSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWA 234
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A+ A +S+ DT F +++G++ +++ L + + A V++D TG
Sbjct: 139 AIKVNWAYASTQREDTSGHF--HIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTG 196
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT------EKPLVQ---------- 164
RSR + FV + ++A I ++ G +G R+I+ N EKP
Sbjct: 197 RSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNSEEKPETDNHNAVVLTNG 256
Query: 165 ------VDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
D S N ++P VYVGNL V + L + F G V + + +RV
Sbjct: 257 SSTNSATDASQDAGSKENPENNPDCTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEIRV 315
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ GFGFV +S+ +A AI N ++ G+ I+
Sbjct: 316 ---QQDKGFGFVRYSTHGEAALAIQMANGLVVRGKSIKC 351
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+ ++ DEL + G A+E+ V DK F FV T +A I+
Sbjct: 284 VYVGNLGHEVNRDELHRHFYNLGVGAIEEIRVQQDK------GFGFVRYSTHGEAALAIQ 337
Query: 142 KLNGTEIGGREIKVNITEKP 161
NG + G+ IK + KP
Sbjct: 338 MANGLVVRGKSIKCSWGNKP 357
>gi|6715645|gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 17/179 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVI-YDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+Y+ NIPR+ D +L + Q G V EV+ + TG SR +V M ++ A I
Sbjct: 466 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 525
Query: 143 LNGT---------EIGGREIKV--NITEKPLVQVDLSLLQAEDSNFV--DSPYKVYVGNL 189
L+GT E+GGRE++V ++ P + + +L + + +S +KVYVGNL
Sbjct: 526 LDGTVRARETKKQEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNL 585
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS---SLNN 245
+ L+ FS+ G ++S +VL T ++ F F++F+S E+ +AA+S ++NN
Sbjct: 586 PWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTVNN 644
>gi|260821286|ref|XP_002605964.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
gi|229291301|gb|EEN61974.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
Length = 330
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 89 IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI 148
+P+ + DE+ + G VE ++I DK TG+S + FV +DA I LNG +
Sbjct: 34 LPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEKAINTLNGLRL 93
Query: 149 GGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQV 208
+ IKV+ +P Q +D+N +YV L KT+T + L+ F G++
Sbjct: 94 QAKTIKVSYA-RPSSQA------IKDAN-------LYVSGLPKTMTQQDLEGLFEAHGRI 139
Query: 209 LSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250
+++++L P T +S G GFV F +AE AI+ LN + +G
Sbjct: 140 ITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNGHIPKG 181
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 34/206 (16%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ +P+ + +L + + HG + + +++D TG+SR FV +A I +L
Sbjct: 115 LYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITEL 174
Query: 144 NGTEIGGR--EIKVNITEKPLVQVDLSLLQA---------------EDSNFVDSP----- 181
NG G I V P +L QA + + F SP
Sbjct: 175 NGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMGADP 234
Query: 182 ------------YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
+ ++V NLA +L + F G V + KV+R T+K GFGFVT
Sbjct: 235 MGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFGFVT 294
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRV 255
+ ++A AI+ LN L G+ ++V
Sbjct: 295 MAHYDEAVVAIAQLNGYCLGGRVLQV 320
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238
DS + V L +T+T + +K FS G+V S K++R T +S G+GFV + +DAE
Sbjct: 24 DSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVKPQDAEK 83
Query: 239 AISSLNNSLLEGQRIRVNKA 258
AI++LN L+ + I+V+ A
Sbjct: 84 AINTLNGLRLQAKTIKVSYA 103
>gi|393218535|gb|EJD04023.1| hypothetical protein FOMMEDRAFT_133373 [Fomitiporia mediterranea
MF3/22]
Length = 422
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Query: 78 SEFARR--VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVE 134
+E RR +Y+GN+ + LT+I G V+ ++I D+ Y + FV +
Sbjct: 7 AEAPRRAHLYVGNLSPRVTEYMLTEIFAVAGPVQHVKIIPDRNYQHGGLNYGFVEYMDMR 66
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194
A ++ LNG +I EI+VN + ED++ + V+VG+L+ V
Sbjct: 67 AAETALQTLNGRKIFDTEIRVNWAYQ-------GSTAKEDTS---GHFHVFVGDLSPEVN 116
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
+L K FS G + A+V+ + KS G+GF+ F + DAE AI+++N L + IR
Sbjct: 117 DAVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR 176
Query: 255 VNKA 258
VN A
Sbjct: 177 VNWA 180
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +E K+ +++G + A + D+ G+SR F FV E A +E+L
Sbjct: 262 VYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQ-EGKSRGFGFVNFSEHEQAAKAVEEL 320
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDS--NFVDSPYK---VYVGNLAKTVTSEML 198
N TE G+++ + +K + + L +A ++ N S Y+ +Y+ NL + E L
Sbjct: 321 NDTEFHGQKLFLGRAQK-KSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERL 379
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ F+ G SAKV+R P T S GFGFV +S+ E+A A++ +N ++E + + V
Sbjct: 380 QEEFAPFGTTTSAKVMRTP-TGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYV 435
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G + N++ L +I GAV V D T RS +A+V ED+ +E+L
Sbjct: 82 LYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALEQL 141
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T I GR ++ +++ D +A N +++ NL + + ++ L F+
Sbjct: 142 NYTPIRGRPCRIMWSQR-----DPGQRRAGQGN-------IFIKNLDEAIDNKALHDTFA 189
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G++LS KV S G+GFV + S + AEAAI +N LL +++ V
Sbjct: 190 AFGKILSCKVAS--NEHGSLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVG 240
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 13/177 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ IDN L G + +V +++ S + FV ++ + A A I+ +
Sbjct: 170 IFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHG--SLGYGFVHYESNDAAEAAIKHV 227
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + +++ V +I++K Q + +A +N VYV NL VT E +K
Sbjct: 228 NGMLLNDKKVYVGHHISKKDR-QAKIEEARAHYTN-------VYVKNLDPAVTQEEFEKL 279
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + G++ SA + KS GFGFV FS E A A+ LN++ GQ++ + +A
Sbjct: 280 FEKYGKITSAAIA-TDQEGKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRA 335
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+P + D++ L + G A+V+ TG SR F FV E+AN + ++
Sbjct: 365 LYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTP-TGASRGFGFVCYSAPEEANKAVAEM 423
Query: 144 NGTEIGGREIKVNITEK 160
NG I R + V + ++
Sbjct: 424 NGKMIENRPLYVALAQR 440
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 9/177 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V++ N +ID+++L K+ E+G E +VI D TG+S+ F FV +T E A + +L
Sbjct: 200 VFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLEL 258
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+G I G+ + V +K + ++ L+ ++ N S +Y+ NL +T+ E L
Sbjct: 259 HGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKN-RPSGVPIYIKNLDETINDEKL 317
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
K+ FS G + AKV+ G K GFG V FSS E+A A+ +N ++ + + V
Sbjct: 318 KEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEACKAVDEMNGRIIGSKTLHV 372
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ + IDN L + G + +V+ D S+ +A+V ++ AN I +
Sbjct: 107 IFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHM 164
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + R++ V + P + + E + F + V+V N + E L K FS
Sbjct: 165 NGVRLNNRQVYVGRFKFPEERA-AEVRTRERATFTN----VFVKNFGDDIDDEKLNKLFS 219
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G S KV+R T KS GFGFV + + E A+ A+ L+ ++G+ + V +A
Sbjct: 220 EYGPTESVKVIR-DATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRA 273
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245
VG+L VT +ML K F G + ++ R P T G+G+V F DAE A++++N
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 246 SLLEGQRIRV 255
L+ G+ R+
Sbjct: 81 DLINGKPFRL 90
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ I++++L + G++ +A+V+ + G+ + F V + E+A ++++
Sbjct: 303 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEACKAVDEM 360
Query: 144 NGTEIGGREIKVNITE 159
NG IG + + V + +
Sbjct: 361 NGRIIGSKTLHVTLGQ 376
>gi|392869588|gb|EJB11873.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides immitis RS]
Length = 466
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVED 135
P R +Y+G + + D L +I + G V+ ++I DK + + + FV
Sbjct: 87 PEPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNFQSKGLNYGFVEYDDPGA 146
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTV 193
A ++ LNG + EI+VN Q+ ++N D+ + ++VG+L+ V
Sbjct: 147 AERAMQTLNGRRVHQSEIRVNWA-----------YQSNNANKEDTSNHFHIFVGDLSNEV 195
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
E+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + I
Sbjct: 196 NDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAI 255
Query: 254 RVNKA 258
R N A
Sbjct: 256 RCNWA 260
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TP ++ Y+GN+ ++L + Q G V + D R FAFV M T E+
Sbjct: 305 TP-QWQTTCYVGNLTPYTTQNDLVPLFQNFGYVVETRFQAD------RGFAFVKMDTHEN 357
Query: 136 ANAVIEKLNGTEIGGREIKVNITE--KPLVQVDLSLLQAEDSNFVDSP 181
A I +LNG + GR +K + + P Q D S Q + F P
Sbjct: 358 AAMAICQLNGYNVNGRPLKCSWGKDRPPTGQFDYSPQQGANPAFNSGP 405
>gi|115491713|ref|XP_001210484.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
gi|114197344|gb|EAU39044.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
Length = 478
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK--YTGRSRRFAFVMMKTVE 134
P R +Y+G + + D L +I + G V ++I DK + + + FV
Sbjct: 86 PEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPG 145
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKT 192
A ++ LNG I EI+VN Q+ ++N D+ + ++VG+L+
Sbjct: 146 AAERAMQTLNGRRIHQSEIRVNWA-----------YQSNNTNKEDTSNHFHIFVGDLSNE 194
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
V E+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L +
Sbjct: 195 VNDEILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSMDGEWLGSRA 254
Query: 253 IRVNKA 258
IR N A
Sbjct: 255 IRCNWA 260
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TP ++ Y+GN+ ++L + Q G V + + D R FAF+ M + E+
Sbjct: 305 TP-QWQTTCYVGNLTPYTSQNDLVPLFQNFGFVLETRLQAD------RGFAFIKMDSHEN 357
Query: 136 ANAVIEKLNGTEIGGREIKVNITE--KPLVQVDLSLLQAEDSNFVDSP 181
A I +LNG + GR +K + + P Q D Q +S F SP
Sbjct: 358 AAMAICQLNGYNVNGRPLKCSWGKDRPPTGQFDNFPGQQGNSPFNSSP 405
>gi|388578824|gb|EIM19158.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 430
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++G + NID+D L ++ G V+ A V D+ +GRSR F +V ++ E A +++
Sbjct: 206 QIFVGQLSWNIDDDWLKSEFEQLGPVKTARVQLDRQSGRSRGFGYVEFESHELAVKAMDQ 265
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
G EI GR ++V+++ P ++ D +++GNL+ + + + F
Sbjct: 266 FAGKEIDGRPVRVDLS-VPRAPNPEKRAKSFGDQRSDPSNTLFIGNLSFNTNEDRVWEFF 324
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
E G V S +V T GFG+V+F+ + A+AAI S L+G+ IR++
Sbjct: 325 GEFGSVESVRVPTDRETGAPKGFGYVSFADVDTAKAAIDGAAGSELDGRVIRLD 378
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGN+ N + D + + E G+VE V D+ TG + F +V V+ A A I+
Sbjct: 306 LFIGNLSFNTNEDRVWEFFGEFGSVESVRVPTDRETGAPKGFGYVSFADVDTAKAAIDGA 365
Query: 144 NGTEIGGREIKVNIT 158
G+E+ GR I+++ +
Sbjct: 366 AGSELDGRVIRLDFS 380
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 170 LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229
++A ++ +D+ +++VG L+ + + LK F + G V +A+V + +S GFG+V
Sbjct: 193 MEAAEAITLDNTPQIFVGQLSWNIDDDWLKSEFEQLGPVKTARVQLDRQSGRSRGFGYVE 252
Query: 230 FSSEEDAEAAISSLNNSLLEGQRIRVN 256
F S E A A+ ++G+ +RV+
Sbjct: 253 FESHELAVKAMDQFAGKEIDGRPVRVD 279
>gi|357148481|ref|XP_003574781.1| PREDICTED: nucleolysin TIAR-like [Brachypodium distachyon]
Length = 452
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GN+ N+ L ++ Q G VE+ ++I + + F FV A I
Sbjct: 76 CRSVYVGNVHPNVTESLLIEVFQSSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAI 131
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
L+G I G+ IKVN + Q ED++ + ++VG+L+ V L
Sbjct: 132 MSLHGRHIYGQAIKVNWA--------YASTQREDTS---GHFHIFVGDLSSEVNDATLYA 180
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S G+GFV+F ++++AE AI+ + L ++IR N A
Sbjct: 181 CFSVYTSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWA 238
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A+ A +S+ DT F +++G++ +++ L + + A V++D TG
Sbjct: 143 AIKVNWAYASTQREDTSGHF--HIFVGDLSSEVNDATLYACFSVYTSCSDARVMWDNKTG 200
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ---------------- 164
RSR + FV + ++A I ++ G +G R+I+ N K +
Sbjct: 201 RSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKTNAEEKQETDNHNAVVLTNG 260
Query: 165 --VDLSLLQAEDSNFVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
+ ++ +++ ++P VYVGNL V + L + F G V + + +RV
Sbjct: 261 SSSNAAMEGNQETGSKENPENNPDFTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRV 319
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ GFGFV +++ +A AI N ++ G+ I+
Sbjct: 320 ---QQDKGFGFVRYNTHGEAALAIQMANGLVIRGKPIKC 355
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+ ++ DEL + G A+E+ V DK F FV T +A I+
Sbjct: 288 VYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQDK------GFGFVRYNTHGEAALAIQ 341
Query: 142 KLNGTEIGGREIKVNITEKP 161
NG I G+ IK + KP
Sbjct: 342 MANGLVIRGKPIKCSWGNKP 361
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L ++ + G +V+ D+ +G S+ F FV + EDA +E++
Sbjct: 262 VYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDE-SGTSKGFGFVNFERHEDAQKAVEEM 320
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K Q +L L Q + + +YV NL + E
Sbjct: 321 NGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQG--VNLYVKNLDDGIDDER 378
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 379 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 427
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 13/177 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D++ S+ + FV +T + A I+K+
Sbjct: 170 IFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG--SKGYGFVHFETRDAAERAIDKM 227
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + LK+ F
Sbjct: 228 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDLRLKRLF 280
Query: 203 SEKGQVLSAKVLR-VPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ GTSK GFGFV F EDA+ A+ +N L G++I V +A
Sbjct: 281 GKFGPALSVKVMTDESGTSK--GFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRA 335
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 365 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 422
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + + + ++
Sbjct: 423 NGRIVATKPLYIALAQR 439
>gi|222639809|gb|EEE67941.1| hypothetical protein OsJ_25829 [Oryza sativa Japonica Group]
Length = 164
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 109 EKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ---V 165
+ ++ D TG SR FV M+++ +A + L+G ++ GRE+ V ++ + + +
Sbjct: 6 DNPQISRDPETGLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNI 65
Query: 166 DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
+++ + +SP+K+YVGN+A +V + L++ FS+ G V+S ++L + +
Sbjct: 66 NMTHTPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVY 125
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
GF++F+S E+ EAA+ L+N+ G+ I V +A
Sbjct: 126 GFLSFASAEELEAAL-KLDNTHFHGRNILVRQA 157
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++Y+GNI +++ EL + + G V ++ D+ GR R + F+ + E+ A
Sbjct: 79 ESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEA 138
Query: 139 VIEKLNGTEIGGREIKV 155
+ KL+ T GR I V
Sbjct: 139 AL-KLDNTHFHGRNILV 154
>gi|410909355|ref|XP_003968156.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Takifugu
rubripes]
Length = 526
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV E A +E+
Sbjct: 100 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 159
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ ++ + +
Sbjct: 160 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHPDLSDDDI 212
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P + + GFGF+ + + A A+SS+N L GQ +RV KA
Sbjct: 213 KSVFEAFGRIKSCMLARDPTSGRHRGFGFIEYEKPQSALDAVSSMNLFDLGGQYLRVGKA 272
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ ++ +D++ + + G ++ + D +GR R F F+
Sbjct: 185 IDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCMLARDPTSGRHRGFGFIEY 244
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + A + +N ++GG+ ++V P
Sbjct: 245 EKPQSALDAVSSMNLFDLGGQYLRVGKAVTP 275
>gi|261203287|ref|XP_002628857.1| ribonucleoprotein [Ajellomyces dermatitidis SLH14081]
gi|239586642|gb|EEQ69285.1| ribonucleoprotein [Ajellomyces dermatitidis SLH14081]
Length = 510
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++GN+ N+D + L +E G + ++ D+ +GRSR F +V DA
Sbjct: 261 LFVGNLSWNVDEEWLRSEFEEFGELSGVRIVTDRDSGRSRGFGYVEFVDAADAAKAHAAK 320
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK--VYVGNLAKTVTSEMLK 199
E+ GR++ ++ Q+ NF D SP +++GN++ + M+
Sbjct: 321 KDVELDGRKLNIDFANARSNAAPRERAQSRAQNFGDQASPESDTLFIGNISFSADENMIS 380
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ FSE G +L ++ P + + GFG+V FSS ++A +A +LN + L G+ +R++
Sbjct: 381 EAFSEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSAFQTLNGADLGGRPMRLD 437
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 46/75 (61%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++IGNI + D + +++ EHG++ + D +GR + F +V +V++A + + L
Sbjct: 365 LFIGNISFSADENMISEAFSEHGSILGVRLPTDPESGRPKGFGYVQFSSVDEARSAFQTL 424
Query: 144 NGTEIGGREIKVNIT 158
NG ++GGR ++++ +
Sbjct: 425 NGADLGGRPMRLDFS 439
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 167 LSLLQAEDSNFVDSPYK----------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
L +AED + +P K ++VGNL+ V E L+ F E G++ +++
Sbjct: 234 LQKRKAEDDEELAAPKKTKVESSEGGNLFVGNLSWNVDEEWLRSEFEEFGELSGVRIVTD 293
Query: 217 PGTSKSSGFGFVTF 230
+ +S GFG+V F
Sbjct: 294 RDSGRSRGFGYVEF 307
>gi|15231783|ref|NP_188026.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9294635|dbj|BAB02974.1| RNA binding protein nucleolysin; oligouridylate binding protein
[Arabidopsis thaliana]
gi|22655004|gb|AAM98093.1| AT3g14100/MAG2_5 [Arabidopsis thaliana]
gi|28416511|gb|AAO42786.1| AT3g14100/MAG2_5 [Arabidopsis thaliana]
gi|332641947|gb|AEE75468.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 427
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIY-DKYTGRSRRFAFVMMKTVEDANAV 139
R VY+GNI + L +I G VE +++I DK + + FV A
Sbjct: 58 CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALA 112
Query: 140 IEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
I LNG + G+ IKVN + Q ED++ S + ++VG+L+ VT L
Sbjct: 113 ILSLNGRHLFGQPIKVNWA--------YATGQREDTS---SHFNIFVGDLSPEVTDATLY 161
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ FS A+V+ T +S GFGFV+F +++DA+ AI+ +N L ++IR N A
Sbjct: 162 QSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 27/191 (14%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT S F +++G++ + + L + + A V++D+ TGRSR F FV + +
Sbjct: 139 DTSSHF--NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAEDSNFV---D 179
DA I ++NG + R+I+ N K V+L+ +ED +
Sbjct: 197 DAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEE 256
Query: 180 SPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
+P VYVGNLA VT L + F L A V+ + GFGFV +++
Sbjct: 257 TPENNSQFTTVYVGNLAPEVTQLDLHRYF----HALGAGVIEEVRVQRDKGFGFVRYNTH 312
Query: 234 EDAEAAISSLN 244
+A AI N
Sbjct: 313 PEAALAIQMGN 323
>gi|357479379|ref|XP_003609975.1| RNA-binding protein [Medicago truncatula]
gi|355511030|gb|AES92172.1| RNA-binding protein [Medicago truncatula]
Length = 404
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + L ++ GA+E ++I + + + FV A I
Sbjct: 45 CRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKS----SYGFVDYFDRSSAAIAI 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG I G+ IKVN + Q ED++ + ++VG+L+ VT L
Sbjct: 101 VTLNGRNIFGQSIKVNWA--------YTRGQREDTS---GHFHIFVGDLSPEVTDATLYA 149
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F ++++A++AI+ L L ++IR N A
Sbjct: 150 CFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWA 207
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT F +++G++ + + L + + A V++D+ TGRSR F FV + +
Sbjct: 126 DTSGHF--HIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 183
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAEDSNFV---D 179
+A + I L G +G R+I+ N K V+L+ +E++ + D
Sbjct: 184 EAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDD 243
Query: 180 SPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
SP K VYVGNLA VTS L F G V + + +RV + GFGFV +S+
Sbjct: 244 SPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALG-VGTIEDVRV---QRDKGFGFVRYSTH 299
Query: 234 EDAEAAISSLNNSLLEGQRIRVN 256
+A AI N L G+ I+ +
Sbjct: 300 GEAALAIQMGNTRFLFGKPIKCS 322
>gi|357479381|ref|XP_003609976.1| RNA-binding protein [Medicago truncatula]
gi|355511031|gb|AES92173.1| RNA-binding protein [Medicago truncatula]
Length = 415
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GNI + L ++ GA+E ++I + + + FV A I
Sbjct: 45 CRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKS----SYGFVDYFDRSSAAIAI 100
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
LNG I G+ IKVN + Q ED++ + ++VG+L+ VT L
Sbjct: 101 VTLNGRNIFGQSIKVNWA--------YTRGQREDTS---GHFHIFVGDLSPEVTDATLYA 149
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S GFGFV+F ++++A++AI+ L L ++IR N A
Sbjct: 150 CFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWA 207
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 27/203 (13%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT F +++G++ + + L + + A V++D+ TGRSR F FV + +
Sbjct: 126 DTSGHF--HIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 183
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAEDSNFV---D 179
+A + I L G +G R+I+ N K V+L+ +E++ + D
Sbjct: 184 EAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDD 243
Query: 180 SPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
SP K VYVGNLA VTS L F G V + + +RV + GFGFV +S+
Sbjct: 244 SPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALG-VGTIEDVRV---QRDKGFGFVRYSTH 299
Query: 234 EDAEAAISSLNNSLLEGQRIRVN 256
+A AI N L G+ I+++
Sbjct: 300 GEAALAIQMGNTRFLFGKPIKMH 322
>gi|321474916|gb|EFX85880.1| hypothetical protein DAPPUDRAFT_20224 [Daphnia pulex]
Length = 346
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 23/212 (10%)
Query: 54 DSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEV 113
+ R V T+ ++ DT F +++G++ I+ L G + V
Sbjct: 60 NCMGREMKVNWATSPGNAPKQDTSKHF--HIFVGDLSPEIETHTLRDAFAAFGEISDCRV 117
Query: 114 IYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLS---- 168
+ D T +S+ + FV DA I +NG +G R I+ N T KP D
Sbjct: 118 VRDPQTLKSKGYGFVSFVKKSDAENAIAGMNGQWLGTRAIRTNWATRKPPAPKDAGSKPM 177
Query: 169 -----LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSS 223
Q+ +N VY GNLA+ T E L+K F GQ+ +V K
Sbjct: 178 SYEEVFGQSSSTNCT-----VYCGNLAQGSTEEALQKIFGPYGQIQEIRVF------KDK 226
Query: 224 GFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G+ F+ F+S+E A AI S++N+ L GQ ++
Sbjct: 227 GYAFIRFASKESATQAIVSVHNTDLNGQNVKC 258
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 12/174 (6%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ ++ + + + + G V+ ++I++ + FV A A + +N
Sbjct: 1 YVGNLDPSVTEELIMVLFGQIGTVKGCKIIHEP---GHEPYCFVEFAEHHSAAAALAAMN 57
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
GRE+KVN P +D++ + ++VG+L+ + + L+ F+
Sbjct: 58 KRNCMGREMKVNWATSP------GNAPKQDTS---KHFHIFVGDLSPEIETHTLRDAFAA 108
Query: 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ +V+R P T KS G+GFV+F + DAE AI+ +N L + IR N A
Sbjct: 109 FGEISDCRVVRDPQTLKSKGYGFVSFVKKSDAENAIAGMNGQWLGTRAIRTNWA 162
>gi|297829972|ref|XP_002882868.1| hypothetical protein ARALYDRAFT_478823 [Arabidopsis lyrata subsp.
lyrata]
gi|297328708|gb|EFH59127.1| hypothetical protein ARALYDRAFT_478823 [Arabidopsis lyrata subsp.
lyrata]
Length = 430
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIY-DKYTGRSRRFAFVMMKTVEDANAV 139
R VY+GNI + L +I G VE +++I DK + + FV A
Sbjct: 60 CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALA 114
Query: 140 IEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
I LNG + G+ IKVN + Q ED++ S + ++VG+L+ VT L
Sbjct: 115 ILSLNGRHLFGQPIKVNWA--------YATGQREDTS---SHFNIFVGDLSPEVTDATLY 163
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ FS A+V+ T +S GFGFV+F +++DA+ AI+ +N L ++IR N A
Sbjct: 164 QSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 222
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 27/191 (14%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT S F +++G++ + + L + + A V++D+ TGRSR F FV + +
Sbjct: 141 DTSSHF--NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 198
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAEDSNFV---D 179
DA I ++NG + R+I+ N K V+L+ +ED +
Sbjct: 199 DAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEE 258
Query: 180 SPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
+P VYVGNLA VT L + F L A V+ + GFGFV +++
Sbjct: 259 APENNSQFTTVYVGNLAPEVTQLDLHRYF----HALGAGVIEEVRVQRDKGFGFVRYNTH 314
Query: 234 EDAEAAISSLN 244
+A AI N
Sbjct: 315 PEAALAIQMGN 325
>gi|21593280|gb|AAM65229.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
Length = 427
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIY-DKYTGRSRRFAFVMMKTVEDANAV 139
R VY+GNI + L +I G VE +++I DK + + FV A
Sbjct: 58 CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALA 112
Query: 140 IEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
I LNG + G+ IKVN + Q ED++ S + ++VG+L+ VT L
Sbjct: 113 ILSLNGRHLFGQPIKVNWA--------YATGQREDTS---SHFNIFVGDLSPEVTDATLY 161
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ FS A+V+ T +S GFGFV+F +++DA+ AI+ +N L ++IR N A
Sbjct: 162 QSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 27/191 (14%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT S F +++G++ + + L + + A V++D+ TGRSR F FV + +
Sbjct: 139 DTSSHF--NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQ------------VDLSLLQAEDSNFV---D 179
DA I ++NG + R+I+ N K V+L+ +ED +
Sbjct: 197 DAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEE 256
Query: 180 SPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
+P VYVGNLA VT L + F L A V+ + GFGFV +++
Sbjct: 257 TPENNSQFTTVYVGNLAPEVTQLDLHRYF----HALGAGVIEEVRVQRDKGFGFVRYNTH 312
Query: 234 EDAEAAISSLN 244
+A AI N
Sbjct: 313 PEAALAIQMGN 323
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ ++G +V+ D G+S+ F FV + EDA ++ +
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG ++ G+ I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKEMF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ KS GFGFV+F EDA+ A+ +N + G+ I V +A
Sbjct: 212 GKYGPALSVKVM-TDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRA 266
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|6996560|emb|CAB75429.1| oligouridylate binding protein [Nicotiana plumbaginifolia]
Length = 406
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIY-DKYTGRSRRFAFVMMKTVEDA 136
S R VY+GNI + L ++ G +E ++I DK + + FV A
Sbjct: 45 SSTCRSVYVGNIHPQVTEPLLQEVFASTGPLEGCKLIRKDKSS-----YGFVDYFDRRSA 99
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
I LNG + G+ IKVN + Q ED++ + Y ++VG+L+ VT
Sbjct: 100 ALAIVTLNGRHLFGQPIKVNWA--------YASAQREDTS---NHYNIFVGDLSPEVTDA 148
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L CFS A+V+ T +S GFGFV+F ++++A++AI+ LN L ++IR N
Sbjct: 149 TLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLNGKWLGSRQIRCN 208
Query: 257 KA 258
A
Sbjct: 209 WA 210
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 27/210 (12%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A +S+ DT + + +++G++ + + L + + A V++D+ TGRSR F
Sbjct: 121 AYASAQREDTSNHY--NIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFG 178
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ-----------VDLSLLQAEDS 175
FV + ++A + I LNG +G R+I+ N K V+L+ ++D
Sbjct: 179 FVSFRNQQEAQSAINDLNGKWLGSRQIRCNWAAKGAGAVGEQNSDAKSVVELTSGTSDDG 238
Query: 176 N----FVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
D+P VYVGNLA VTS L + F L A V+ + GF
Sbjct: 239 QEKVVNEDAPENNPQYTTVYVGNLAPEVTSVDLHRHF----HALGAGVIEDVRIQRDKGF 294
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
GFV +SS +A AI N LL G+ ++
Sbjct: 295 GFVRYSSHAEAARAIQLGNARLLFGKPVKC 324
>gi|242082185|ref|XP_002445861.1| hypothetical protein SORBIDRAFT_07g027050 [Sorghum bicolor]
gi|241942211|gb|EES15356.1| hypothetical protein SORBIDRAFT_07g027050 [Sorghum bicolor]
Length = 447
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GN+ N+ L ++ Q G VE+ ++I + + F FV A I
Sbjct: 70 CRSVYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKS----SFGFVDYYDRRSAALAI 125
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
L+G I G+ IKVN + Q ED++ + ++VG+L+ V L
Sbjct: 126 MTLHGRHIYGQAIKVNWA--------YASTQREDTS---GHFHIFVGDLSSEVNDATLYA 174
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S G+GFV+F ++++AE AI+ + L ++IR N A
Sbjct: 175 CFSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWA 232
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A+ A +S+ DT F +++G++ +++ L + + A V++D TG
Sbjct: 137 AIKVNWAYASTQREDTSGHF--HIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTG 194
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT------EKPLVQ---------- 164
RSR + FV + ++A I ++ G +G R+I+ N EKP
Sbjct: 195 RSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKNNSEEKPETDNHNAVVLTNG 254
Query: 165 ------VDLSLLQAEDSNFVDSP--YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
D S N ++P VYVGNL V + L + F G V + + +RV
Sbjct: 255 SSSNSATDASQDGGSKENPENNPDCTTVYVGNLGHEVNRDELHRHFYSLG-VGAIEEIRV 313
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ GFGFV +S+ +A AI N ++ G+ I+
Sbjct: 314 ---QQDKGFGFVRYSTHGEAALAIQMGNGLVVRGKPIKC 349
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 61 AVAEETASSSSSSVDTPSEFARR-----------VYIGNIPRNIDNDELTKIVQEHG--A 107
AV SSS+S+ D + + VY+GN+ ++ DEL + G A
Sbjct: 248 AVVLTNGSSSNSATDASQDGGSKENPENNPDCTTVYVGNLGHEVNRDELHRHFYSLGVGA 307
Query: 108 VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+E+ V DK F FV T +A I+ NG + G+ IK + KP
Sbjct: 308 IEEIRVQQDK------GFGFVRYSTHGEAALAIQMGNGLVVRGKPIKCSWGNKP 355
>gi|169772913|ref|XP_001820925.1| glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40]
gi|238490830|ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
gi|83768786|dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697065|gb|EED53406.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
Length = 125
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 54/79 (68%)
Query: 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
S KVYVGNL+ E L++ FSE G VL A V++ T +S GFGFVTFS++ +A+AA
Sbjct: 2 SSAKVYVGNLSWNTNDESLRQTFSEFGNVLDAIVMKDRETGRSRGFGFVTFSAQTEADAA 61
Query: 240 ISSLNNSLLEGQRIRVNKA 258
I LN L+G+RIRVN A
Sbjct: 62 IGGLNEQELDGRRIRVNLA 80
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+VY+GN+ N +++ L + E G V A V+ D+ TGRSR F FV +A+A I
Sbjct: 5 KVYVGNLSWNTNDESLRQTFSEFGNVLDAIVMKDRETGRSRGFGFVTFSAQTEADAAIGG 64
Query: 143 LNGTEIGGREIKVNI 157
LN E+ GR I+VN+
Sbjct: 65 LNEQELDGRRIRVNL 79
>gi|348507121|ref|XP_003441105.1| PREDICTED: nucleolysin TIAR [Oreochromis niloticus]
Length = 382
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 98/177 (55%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 8 RTLYVGNLSRDVTEILILQLFTQIGPCKSCKMITEHTS--NDPYCFVEFFEHRDAAAALA 65
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L +T+E ++
Sbjct: 66 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLNPEITTEDVRVA 115
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +++ L G++IR N A
Sbjct: 116 FAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIINMSGQWLGGRQIRTNWA 172
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 84 TPSSQKKDTSNHF--HVFVGDLNPEITTEDVRVAFAPFGKISDARVVKDMTTGKSKGYGF 141
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD-----SP 181
V DA I ++G +GGR+I+ N T KP ++ F D SP
Sbjct: 142 VSFYNKLDAENAIINMSGQWLGGRQIRTNWATRKPPAPKSTQDNGSKQLRFDDVVNQSSP 201
Query: 182 YK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G + ++ ++++ FS GQ++ +V G+ F+ FSS + A A
Sbjct: 202 QNCTVYCGGIQSGLSEHLMRQTFSPFGQIMEVRVF------PEKGYSFIRFSSHDSAAHA 255
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N +++EG ++
Sbjct: 256 IVSVNGTVIEGHVVKC 271
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + F++ G S K++ T +S + FV F DA A
Sbjct: 7 PRTLYVGNLSRDVTEILILQLFTQIGPCKSCKMI----TEHTSNDPYCFVEFFEHRDAAA 62
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 63 ALAAMNGRKILGKEVKVNWA 82
>gi|218200393|gb|EEC82820.1| hypothetical protein OsI_27609 [Oryza sativa Indica Group]
Length = 164
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 109 EKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ---V 165
+ ++ D TG SR FV M+++ +A + L+G ++ GRE+ V ++ + + +
Sbjct: 6 DNPQISRDPETGLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNI 65
Query: 166 DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF 225
+++ + +SP+K+YVGN+A +V + L++ FS+ G V+S ++L + +
Sbjct: 66 NMTHTPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVY 125
Query: 226 GFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
GF++F+S E+ EAA+ L+N+ G+ I V +A
Sbjct: 126 GFLSFASAEELEAAL-KLDNTHFHGRNILVRQA 157
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E ++Y+GNI +++ EL + + G V ++ D+ GR R + F+ + E+ A
Sbjct: 79 ESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEA 138
Query: 139 VIEKLNGTEIGGREIKV 155
+ KL+ T GR I V
Sbjct: 139 AL-KLDNTHFHGRNILV 154
>gi|195427509|ref|XP_002061819.1| GK17204 [Drosophila willistoni]
gi|194157904|gb|EDW72805.1| GK17204 [Drosophila willistoni]
Length = 631
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 5/177 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + G ++ + +D T + + FAFV + E A +E+
Sbjct: 111 RVYVGSISFELKEDTIRAAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 170
Query: 143 LNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +GGR IKV + P Q + +Q E +F ++YV ++ ++ E +K
Sbjct: 171 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSF----NRIYVASIHPDLSEEDIKSV 226
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G +L K+ + G+GF+ +++++ + AI+S+N L GQ +RV ++
Sbjct: 227 FEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 283
>gi|358335955|dbj|GAA54545.1| poly(U)-binding-splicing factor PUF60 [Clonorchis sinensis]
Length = 511
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+G+I ++ D + Q G + + +D T + + FAF+ + E A+ +E+
Sbjct: 77 RIYVGSISYDLKEDSIKTAFQPFGPIRTVTMSWDAATQKHKGFAFIEFEFPEAAHLAVEQ 136
Query: 143 LNGTEIGGREIKV----NITE-KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+N +GGR++KV N+ + PL+ ++ + E KVYV + ++ +
Sbjct: 137 MNNASLGGRQLKVGRPSNLPQADPLINELVTEYKLEK--------KVYVAGVHPDLSEDD 188
Query: 198 LKKCFSEKGQVLSAKVLRVPGTS-KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L F G++ S K+ P + K GFG++ + SE+ A A++S+N L GQ +RV
Sbjct: 189 LALVFEAFGKITSCKLHVDPTKAQKHRGFGYIEYESEQAANDAVASMNMFDLGGQFLRVG 248
Query: 257 KA 258
KA
Sbjct: 249 KA 250
>gi|212538449|ref|XP_002149380.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
gi|210069122|gb|EEA23213.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
Length = 424
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVED 135
P R +YIG + + D L +I + G V+ ++I DK + + + FV
Sbjct: 86 PEPNKRALYIGGLDARVTEDILKQIFETTGHVQSVKIIPDKNFQSKGMNYGFVEYDDPGA 145
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTV 193
A ++ LNG I EI+VN Q+ +++ D+ + ++VG+L+ V
Sbjct: 146 AERAMQTLNGRRIHQSEIRVNWA-----------YQSNNTHKEDTSNHFHIFVGDLSNEV 194
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
E+L + FS G V A+V+ T +S G+GFV F EDAE A+ S++ L + I
Sbjct: 195 NDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKALKSMDREWLGSRAI 254
Query: 254 RVNKA 258
R N A
Sbjct: 255 RCNWA 259
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
++ Y+GN+ ++L + Q G V + + D R FAF+ M T E+A
Sbjct: 306 QWQTTCYVGNLTPYTTQNDLVPLFQNFGYVVETRLQAD------RGFAFLKMDTHENAAM 359
Query: 139 VIEKLNGTEIGGREIKVNITE--KPLVQVDLSLLQAEDSNFVDSPY 182
I +LNG ++ GR +K + + P Q D Q F SPY
Sbjct: 360 AICQLNGYQVNGRPLKCSWGKDRPPTGQFDGYQAQQGGPGFNASPY 405
>gi|223973753|gb|ACN31064.1| unknown [Zea mays]
Length = 359
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 16/220 (7%)
Query: 39 KLSYSLHNLKTASIEDSTTRL-FAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDE 97
KL+++ + D +L A +E ++ SS D +++G++ N+
Sbjct: 111 KLNWATQQPAPKKLPDPDFKLDLATQQERHAAVDSSSD------HSIFVGDLAYNVTGYM 164
Query: 98 LTKIVQ-EHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156
L + + + +V+ A++I+DK+TG S+ + FV V++ + ++NG R +++
Sbjct: 165 LHHVFKARYPSVKSAKIIFDKFTGLSKCYGFVQFGDVDEQIQALTEMNGAYCSTRPMRIG 224
Query: 157 ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
P + Q +S + +++VG L ++VTSE L + FS G+++ K L
Sbjct: 225 PV--PKKKNSFRSKQWTESYHDANNSRLFVGQLDQSVTSEDLMQAFSPYGELVDVKAL-- 280
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
PG G GFVT+S+ AE AI LN S L G+ I+++
Sbjct: 281 PG----KGCGFVTYSNRASAEEAIRMLNGSQLGGKAIKLS 316
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 15/219 (6%)
Query: 51 SIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK 110
S D+ + + A S +S D R ++IG + +D D L +
Sbjct: 8 SWADAPPYHYHGRPQPAPDSPASSDGAGP--RSLWIGGLLLWMDEDYLYGCFTTSRELLS 65
Query: 111 AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG--REIKVNI-TEKP----LV 163
+ +K TG+S F F+ A +++ NG ++ ++ K+N T++P L
Sbjct: 66 LVIKRNKQTGQSEGFGFLKFSDHTAAAHILKSYNGQKMPNAVQDFKLNWATQQPAPKKLP 125
Query: 164 QVDLSL---LQAEDSNFVDSP--YKVYVGNLAKTVTSEMLKKCFSEK-GQVLSAKVLRVP 217
D L Q E VDS + ++VG+LA VT ML F + V SAK++
Sbjct: 126 DPDFKLDLATQQERHAAVDSSSDHSIFVGDLAYNVTGYMLHHVFKARYPSVKSAKIIFDK 185
Query: 218 GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
T S +GFV F ++ A++ +N + + +R+
Sbjct: 186 FTGLSKCYGFVQFGDVDEQIQALTEMNGAYCSTRPMRIG 224
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 12/180 (6%)
Query: 84 VYIGNIPRNI-DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
+Y+ N+P + ND+L K+ ++ G + + D+ +SR F FV + E ANA +E
Sbjct: 188 IYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDE-NDKSRGFGFVNFENSEAANAAVEA 246
Query: 143 LNGTEIG-------GREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
+N EI GR +K + E+ L ++ + Q D +S +Y+ +L + VT
Sbjct: 247 MNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNS--NLYIKHLPEDVTE 304
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L+ FS+ G + S K++ S GFGFV F S ++A AAI ++ S+++G+ + V
Sbjct: 305 DALRDKFSKFGTITSLKIM-TDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYV 363
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 22/213 (10%)
Query: 42 YSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKI 101
++L L I D R+ A+ S A ++I N+ + IDN L
Sbjct: 64 HALEELNFEKIHDKPCRIMWAQRNPAARRSG--------AGNIFIKNLNKEIDNKALYDT 115
Query: 102 VQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
G + +V D+ G SR + FV + EDA I+ +NG + K
Sbjct: 116 FSAFGTILSCKVAADE-KGESRGYGFVHFEKEEDAQKAIDTVNGK----------MLLKQ 164
Query: 162 LVQVDLSLLQAEDSNFVDSPY-KVYVGNLAKT-VTSEMLKKCFSEKGQVLSAKVLRVPGT 219
+V V L + E Y +YV NL + T++ LKK F + G + S L
Sbjct: 165 VVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITST-FLAKDEN 223
Query: 220 SKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252
KS GFGFV F + E A AA+ ++N +E R
Sbjct: 224 DKSRGFGFVNFENSEAANAAVEAMNEKEIETDR 256
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + L + + G+V V D + +S +A+V + DA +E+L
Sbjct: 10 LYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEEL 69
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N +I + ++ Q + + ++ N +++ NL K + ++ L FS
Sbjct: 70 NFEKIHDKPCRIM-----WAQRNPAARRSGAGN-------IFIKNLNKEIDNKALYDTFS 117
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G +LS KV +S G+GFV F EEDA+ AI ++N +L Q + V K
Sbjct: 118 AFGTILSCKVA-ADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTK 170
>gi|262401121|gb|ACY66463.1| TIA-1-like protein [Scylla paramamosain]
Length = 325
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+G++ ID L + Q G + +V+ D + +SR + FV+ DA I
Sbjct: 89 HHVYVGDLSPEIDEQALREAFQVFGEISDCKVVKDPQSFKSRGYGFVVFVKKMDAETSIS 148
Query: 142 KLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD-----SPYK--VYVGNLAKTV 193
+NG +G + IK T KP + + + + N+ + +P V+ G L + +
Sbjct: 149 AMNGQWLGRKMIKTRWATRKPANTPNETKPEQKKLNYDEVFNQTTPTNTTVFCGGLKQDI 208
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
T EML K F GQ+ K+ K G+ F+ ++S+E A AI L+NS L GQ I
Sbjct: 209 TEEMLHKSFQPHGQIEKIKIF------KEKGYAFIKYTSKESACQAIVELHNSNLNGQMI 262
Query: 254 RV 255
R
Sbjct: 263 RC 264
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ ++ D + + + G V ++ + T + FV A I +N
Sbjct: 1 YVGNLDNSVTEDLIMMLFGQLGEVRSCKMFREPTT---DPYCFVEFCDHMTALNAITMMN 57
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF--VDSP--YKVYVGNLAKTVTSEMLKK 200
+ R+++V D + Q + + VD+ + VYVG+L+ + + L++
Sbjct: 58 DKMLQNRKMRV----------DWATGQGNKNKYTKVDTSRHHHVYVGDLSPEIDEQALRE 107
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ KV++ P + KS G+GFV F + DAE +IS++N L + I+ A
Sbjct: 108 AFQVFGEISDCKVVKDPQSFKSRGYGFVVFVKKMDAETSISAMNGQWLGRKMIKTRWA 165
>gi|321262697|ref|XP_003196067.1| non-translatable mRNA -binding protein [Cryptococcus gattii WM276]
gi|317462542|gb|ADV24280.1| Non-translatable mRNA -binding protein, putative [Cryptococcus
gattii WM276]
Length = 434
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIE 141
+Y+GN+ + + LT+I G V A++I D+ + + FV + A +
Sbjct: 23 HLYVGNLSPRVTDYILTEIFAVAGPVVSAKIIQDRNFQHGGFNYGFVEYADMRSAEQALT 82
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I EI+VN + ED+ Y V+VG+L+ V ++L K
Sbjct: 83 TLNGRKIFDAEIRVNWAYQ-------GNQNKEDTQHH---YHVFVGDLSPEVNDDVLSKA 132
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G + A+V+ + KS G+GF++F + DAE AI+S+N L + IRVN A
Sbjct: 133 FGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIASMNGEWLGSRAIRVNWA 189
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats.
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 57/227 (25%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ++ +DE K+ +++GAV + + D+ TG+SR F F+ T E A +E+L
Sbjct: 242 IYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEEL 301
Query: 144 NGTEIGGREIKVNITEKP------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
N EI G+E+ V +K L + + Q + S +V +Y+ NL V E
Sbjct: 302 NSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVG--VNLYIKNLDDEVDDEK 359
Query: 198 LKKCFSEKGQVLSAKVLRV----------------------------------------- 216
L++ F+ G + SAKV+R
Sbjct: 360 LRELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEGAAEGEADAS 419
Query: 217 --------PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
P KS GFGFV FS+ +DA A++ +N ++ G+ + V
Sbjct: 420 GEKQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYV 466
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 9/176 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ IDN L G + +V D++ G S+ + FV +T E A I+ +
Sbjct: 149 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAAQQAIKHV 207
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + +++ V + K Q ++A +N +Y+ NL VT + +K F
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTN-------IYIKNLHADVTDDEFRKLF 260
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G V S+ + R T KS GFGF+ F++ E A A+ LN+ + GQ + V +A
Sbjct: 261 EQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRA 316
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 13/191 (6%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
+TA + SS + + +Y+G + ++ L ++ + G V V D T RS
Sbjct: 42 DTAGPTPSSAAAHPQASASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLG 101
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+A+V + D +E+LN T I R ++ +++ D +L + N +
Sbjct: 102 YAYVNYNSTADGEKALEELNYTLIKNRPCRIMWSQR-----DPALRKTGQGN-------I 149
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
++ NL + ++ L F+ G +LS KV + S G+GFV + ++E A+ AI +N
Sbjct: 150 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAAQQAIKHVN 208
Query: 245 NSLLEGQRIRV 255
LL +++ V
Sbjct: 209 GMLLNEKKVYV 219
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY---KVYVGNLAKTVTSEMLK 199
LNG E I N+T + D S+ P +YVG L ++VT ML
Sbjct: 21 LNGGERAAPAINTNVT----AEADNDTAGPTPSSAAAHPQASASLYVGELDESVTEAMLF 76
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ FS+ G V S +V R T +S G+ +V ++S D E A+ LN +L++ + R+
Sbjct: 77 ELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEELNYTLIKNRPCRI 132
>gi|432911999|ref|XP_004078817.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oryzias
latipes]
Length = 523
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEMPEAAQLALEQ 160
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ ++ E +
Sbjct: 161 MNSVVLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHPDLSDEDI 213
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T + G+GF+ + + + A++S+N L GQ +RV KA
Sbjct: 214 KSVFEAFGRIKSCMLAREPTTGRHKGYGFIEYDKPQSSLDAVASMNLFDLGGQYLRVGKA 273
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L +I G +V+ D +GRSR F FV E+A + ++
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ GR I V +K + ++ ++ E N +YV NL + + L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K F G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFLPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D++ SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +++ E +N VY+ N + + + L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-------VYIKNFGEDMDDKRLREIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G LS KV+ + + +S GFGFV + + E+A+ A+S +N + G+ I V +A
Sbjct: 212 SAFGNTLSVKVM-MDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+Y+G+L VT ML + FS G ++S +V R T +S + ++ F DAE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFEVIKGRPIRI 84
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+D L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>gi|426335862|ref|XP_004029425.1| PREDICTED: nucleolysin TIA-1 isoform p40 [Gorilla gorilla gorilla]
Length = 353
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 53 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 112
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 113 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 172
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 173 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 221
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 222 RFNSHESAAHAIVSVNGTTIEGHVVKC 248
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD---------------------- 41
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 42 -------------EVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 88
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 89 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 148
Query: 258 A 258
A
Sbjct: 149 A 149
>gi|356560231|ref|XP_003548397.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 271
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 10/161 (6%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIY-DKYTGRSRRFAFVMMKTVEDANAV 139
A VY+ N+PR+ D L + + +G + EV+ + S+ ++V + ++ A
Sbjct: 97 ACEVYVCNLPRSCDAAYLLDMFRPYGTILSIEVVCRNAENNESKGCSYVTLGSIHSARNA 156
Query: 140 IEKLNGTEIGGREIKV------NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTV 193
+ L+G+++GG E++V N + +++ S + ++ +SP+K+YVGNLAKTV
Sbjct: 157 VAALDGSDVGGCELRVRFSIEMNSRRRSFNKMNSSTKRI---SYYESPHKLYVGNLAKTV 213
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
E L+ F G ++SA+VLR S + F++F SEE
Sbjct: 214 RPEQLRDLFCRFGNIVSARVLRDFKQGNSRVYAFLSFQSEE 254
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVL-RVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+VYV NL ++ + L F G +LS +V+ R ++S G +VT S A A++
Sbjct: 99 EVYVCNLPRSCDAAYLLDMFRPYGTILSIEVVCRNAENNESKGCSYVTLGSIHSARNAVA 158
Query: 242 SLNNSLLEGQRIRV 255
+L+ S + G +RV
Sbjct: 159 ALDGSDVGGCELRV 172
>gi|242806685|ref|XP_002484795.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces stipitatus ATCC 10500]
gi|218715420|gb|EED14842.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces stipitatus ATCC 10500]
Length = 482
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVED 135
P R +YIG + + D L +I + G V+ ++I DK + + + FV
Sbjct: 87 PEPNKRALYIGGLDARVTEDILKQIFETTGHVQSVKIIPDKNFQSKGMNYGFVEYDDPGA 146
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTV 193
A ++ LNG I EI+VN Q+ +S+ D+ + ++VG+L+ V
Sbjct: 147 AERAMQTLNGRRIHQSEIRVNWA-----------YQSNNSHKEDTSNHFHIFVGDLSNEV 195
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
E+L + FS G V A+V+ T +S G+GFV F EDAE A+ S++ L + I
Sbjct: 196 NDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKALKSMDREWLGSRAI 255
Query: 254 RVNKA 258
R N A
Sbjct: 256 RCNWA 260
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 79 EFARRVYIGNI-PRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
++ Y+GN+ P ND L + Q G V + + D R FAF+ M T E+A
Sbjct: 307 QWQTTCYVGNLTPYTTQND-LVPLFQNFGYVVETRLQAD------RGFAFLKMDTHENAA 359
Query: 138 AVIEKLNGTEIGGREIKVNITE--KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
I +LNG ++ GR +K + + P Q D Q F SPY G ++
Sbjct: 360 MAICQLNGYQVNGRPLKCSWGKDRPPTGQFDGYQAQQGGPGFNASPYFPQYGVPGGPMSP 419
Query: 196 E---MLKKCFSEKGQVLSAKV-LRVPGTSKSSGFG 226
+ + + ++G S + PG++ G G
Sbjct: 420 QGPAPAGRGWDQQGNNFSGGAGYQAPGSAGGYGRG 454
>gi|345569038|gb|EGX51907.1| hypothetical protein AOL_s00043g641 [Arthrobotrys oligospora ATCC
24927]
Length = 512
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 7/183 (3%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SE ++ +++G + N+D D L + ++ VE A V++D RS+ +V T DA
Sbjct: 249 SEESKTLFVGQLSWNVDEDWLRREFEDVATVENARVVWDNQRNRSKGIGYVDFATRADAE 308
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTV 193
+ + G EI GR I ++ T + + + Q F DS ++VGNL+
Sbjct: 309 KALAEKQGAEIDGRPINLDFT---TARQNNNNSQDRARKFGDSESPPSDTLFVGNLSFNA 365
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
E L SE G+V S ++ T GF +VTFS+ ++A+ A +++N + G+ I
Sbjct: 366 DEEALGAAMSEHGEVTSVRIPTDKDTGNKKGFAYVTFSTIDEAKKAHAAMNGQQVCGRSI 425
Query: 254 RVN 256
R +
Sbjct: 426 RTD 428
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
D+ S + +++GN+ N D + L + EHG V + DK TG + FA+V T++
Sbjct: 347 DSESPPSDTLFVGNLSFNADEEALGAAMSEHGEVTSVRIPTDKDTGNKKGFAYVTFSTID 406
Query: 135 DANAVIEKLNGTEIGGREIKVNITE 159
+A +NG ++ GR I+ + ++
Sbjct: 407 EAKKAHAAMNGQQVCGRSIRTDYSQ 431
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L +I G +V+ D +GRSR F FV E+A + ++
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ GR I V +K + ++ ++ E N +YV NL + + L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K F G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFLPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D++ SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +++ E +N VY+ N + + + L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-------VYIKNFGEDMDDKRLREIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G LS KV+ + + +S GFGFV + + E+A+ A+S +N + G+ I V +A
Sbjct: 212 SAFGNTLSVKVM-MDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+Y+G+L VT ML + FS G ++S +V R T +S + ++ F DAE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFEVIKGRPIRI 84
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+D L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>gi|432929636|ref|XP_004081203.1| PREDICTED: poly(U)-binding-splicing factor PUF60-like [Oryzias
latipes]
Length = 526
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 13/181 (7%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV E A +E+
Sbjct: 100 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQ 159
Query: 143 LNGTEIGGREIKV----NITE-KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+N +GGR IKV NI + +P++ D +A N ++YV ++ ++ +
Sbjct: 160 MNSVMLGGRNIKVGRPSNIGQAQPII--DQLAEEARAYN------RIYVASVHPDLSDDD 211
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F G++ S + R P + + GFGF+ + + A A+SS+N L GQ +RV K
Sbjct: 212 IKSVFEAFGRIKSCMLARDPTSGRHRGFGFIEYEKPQSAVDAVSSMNLFDLGGQYLRVGK 271
Query: 258 A 258
A
Sbjct: 272 A 272
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ ++ +D++ + + G ++ + D +GR R F F+
Sbjct: 185 IDQLAEEARAYNRIYVASVHPDLSDDDIKSVFEAFGRIKSCMLARDPTSGRHRGFGFIEY 244
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVNITEKP 161
+ + A + +N ++GG+ ++V P
Sbjct: 245 EKPQSAVDAVSSMNLFDLGGQYLRVGKAVTP 275
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N ++D++ L ++ + G +V+ D+ G+SR F FV + E+A + +
Sbjct: 193 IYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDE-NGQSRGFGFVNFEKHEEAQKAVSNM 251
Query: 144 NGTEIGGREIKVNITEK-----PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+GGR + V +K ++ ++ E N +YV NL + E L
Sbjct: 252 NGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQG-VNLYVKNLDDIIDDEKL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPYGVITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G + +V+ D+ SR F FV +T E AN I +
Sbjct: 101 IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDE--NGSRGFGFVHFETHEAANQAINTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + +L E +N +YV N + E L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRQEREAELGARALEFTN-------IYVKNFEGDMDDECLQELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+ V +S GFGFV F E+A+ A+S++N L G+ + V +A
Sbjct: 212 SQFGKTLSVKVM-VDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRA 266
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G ++S +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFEVIKGRPIRI 84
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+++L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDIIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N ++D++ L + + G +V+ D+ G+S+ F FV + EDA +++L
Sbjct: 161 VYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDE-RGKSKGFGFVSFERGEDAQKAVDEL 219
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + + +YV L + E
Sbjct: 220 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQG--LNLYVKYLDDYIDDER 277
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 278 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGKIV 326
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKP 161
Q ++ K+ V+ D+ S+ + FV +T E A IEK+NG + +++ V +
Sbjct: 88 QRDPSLRKSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRK 145
Query: 162 LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK 221
+ +L E +N VYV N + + E LK F + G LS KV+ K
Sbjct: 146 EREAELGARAKEFTN-------VYVKNFGEDMDDEHLKDLFGKFGPTLSVKVM-TDERGK 197
Query: 222 SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S GFGFV+F EDA+ A+ LN L G++I V +A
Sbjct: 198 SKGFGFVSFERGEDAQKAVDELNGKELSGKQIYVGRA 234
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G +LS +V R T +SSG+ +V F +DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N ++ G+ +R+
Sbjct: 73 NFDVINGKSVRI 84
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ + ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 264 LYVKYLDDYIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 321
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 322 NGKIVATKPLYVALAQR 338
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+P + D D L K ++ G V +VI D+ TG S+ F+ K + A A +E +
Sbjct: 184 LFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK--------------VYVGNL 189
+ EI G+++ +K +AE S+ + + Y+ +YV NL
Sbjct: 244 HEKEIEGKKLYCGRAQK----------KAERSSELKAKYEKIKQERIQRYQGVNLYVKNL 293
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
++ E L++ F + G + SAKV+ +S GFGFV FSS E+A A++ +N +
Sbjct: 294 DDSIDDEGLREAFKQFGNITSAKVI-TDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFG 352
Query: 250 GQRIRVNKA 258
G+ + V A
Sbjct: 353 GKPLYVGLA 361
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ +I L Q G V V D T RS +A+V + DA ++ +
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I G+ I++ +++ D SL ++ N V++ NL +++ ++ L FS
Sbjct: 64 NFDVIKGKPIRIMWSQR-----DPSLRRSGQGN-------VFIKNLDRSIDNKALYDTFS 111
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV V + S GFGFV + S+E A+ AI +N L+E +++ V
Sbjct: 112 SFGNILSCKV--VCDINGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFV 161
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L + ++ G + A+VI D GRS+ F FV + E+A + ++
Sbjct: 288 LYVKNLDDSIDDEGLREAFKQFGNITSAKVITD-LNGRSKGFGFVCFSSPEEATKAVTEM 346
Query: 144 NGTEIGGREIKVNITEK 160
NG GG+ + V + ++
Sbjct: 347 NGRIFGGKPLYVGLAQR 363
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 8/178 (4%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+ SEF VYI N ++D++ L ++ ++G +V+ D +G+S+ F FV E
Sbjct: 184 NKASEFTN-VYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDP-SGKSKGFGFVSFDNHE 241
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPL-VQVDLSLL---QAEDSNFVDSPYKVYVGNLA 190
A +E++NG +I G+ I V +K + Q +L + Q + K+Y+ NL
Sbjct: 242 AAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLD 301
Query: 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
T+ E L+K FS G + KV++ G SK GFG + FSS E+A A++ +N +L
Sbjct: 302 DTIDDEKLRKEFSSFGSISRVKVMQEEGQSK--GFGLICFSSPEEATKAMTEMNGQIL 357
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ R+IDN L + G + ++V+ D S+ +AFV + A+ IE++
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + ++ KV + + + L+ + S F + VY+ N + E L++ FS
Sbjct: 158 NGKLL--KDCKVFVGRFKNRKDREAELRNKASEFTN----VYIKNFGDDMDDERLREVFS 211
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ P + KS GFGFV+F + E A+ A+ +N + GQ I V +A
Sbjct: 212 KYGKTLSVKVMTDP-SGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRA 265
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 178 VDSPYK---VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
V++ Y+ +YVG+L+ VT ++L K FS G VLS ++ R T +S G+ +V F
Sbjct: 3 VEAKYRMASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
DA+ A+ ++N +++G+ IR+
Sbjct: 63 DAQKALDTMNFDMIKGKSIRL 83
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++YI N+ ID+++L K G++ + +V+ ++ G+S+ F + + E+A + +
Sbjct: 294 KLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEEATKAMTE 351
Query: 143 LNGTEIGGREIKVNITEK 160
+NG +G + + + +++K
Sbjct: 352 MNGQILGSKPLNIALSQK 369
>gi|340522219|gb|EGR52452.1| predicted protein [Trichoderma reesei QM6a]
Length = 477
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 10/182 (5%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + + D L +I + G V+ ++I DK + + FV A
Sbjct: 70 PEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAA 128
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ LNG + EI+VN Q + + + ++F ++VG+L+ V +
Sbjct: 129 ERAMQTLNGRRVHQSEIRVNWA----YQSNTTSKEDTSNHF-----HIFVGDLSNEVNDD 179
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + IR N
Sbjct: 180 ILMQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCN 239
Query: 257 KA 258
A
Sbjct: 240 WA 241
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SEF +YI N ++D++ L + ++G +V+ D G+S+ F FV + E A
Sbjct: 313 SEFTN-IYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-RGKSKGFGFVSFDSHEAAK 370
Query: 138 AVIEKLNGTEIGGREIKVNITEKPL-VQVDLSLLQAEDSNFVDSPY---KVYVGNLAKTV 193
+E++NG +I G+ I V +K + Q +L + + Y K+YV NL T+
Sbjct: 371 KAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTI 430
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
E L+ FS G ++ KV++ G SK GFGF+ FSS EDA A+ +N L
Sbjct: 431 DDEKLRNEFSSFGSIIRVKVMQQEGQSK--GFGFICFSSLEDATKAMIEMNGRFL 483
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L + G + ++V+ D S+ +AFV + A+ IE++
Sbjct: 226 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 283
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + + KV + + + L+++ S F + +Y+ N + E LK FS
Sbjct: 284 NGRLL--KSCKVFVGRFKNRKDREAELRSKASEFTN----IYIKNFGGDMDDERLKDVFS 337
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ KS GFGFV+F S E A+ A+ +N + GQ I V +A
Sbjct: 338 KYGKTLSVKVM-TDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 391
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ++L + FS G VLS ++ R T +S G+ +V F DA+ A+ ++
Sbjct: 138 LYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDTM 197
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 198 NFDIIKGKSIRL 209
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ ID+++L G++ + +V+ + G+S+ F F+ ++EDA + +
Sbjct: 420 KLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVM--QQEGQSKGFGFICFSSLEDATKAMIE 477
Query: 143 LNGTEIGGREIKVNITE 159
+NG +G + I + + +
Sbjct: 478 MNGRFLGSKPISIALAQ 494
>gi|338762832|gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
Length = 368
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 14/175 (8%)
Query: 85 YIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144
Y+GN+ + + L ++ + G V V D+ T + + FV ++ EDA+ I+ LN
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEEDADYAIKVLN 87
Query: 145 GTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204
++ G+ I+VN ++D VD +++GNL V ++L FS
Sbjct: 88 MIKLYGKPIRVNKA-------------SQDKKSVDVGANLFIGNLDPDVDEKLLYDTFSA 134
Query: 205 KGQVLS-AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G +++ K++R P T S GFGF+++ S E ++AAI ++N L ++I V+ A
Sbjct: 135 FGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGA-VEKAEVIYDKYTGRSRRF 125
AS SVD ++IGN+ ++D L G V +++ D TG SR F
Sbjct: 101 ASQDKKSVDV----GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGF 156
Query: 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
F+ + E ++A IE +NG + R+I V+ K
Sbjct: 157 GFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L +I G +V+ D +GRSR F FV E+A + ++
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ GR + V +K + ++ ++ E N +YV NL + + L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + S KV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPYGTITSTKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D+Y SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +++ E +N VY+ N + + + LK+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-------VYIKNFGEDMDDKRLKEIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G LS KV+ + + +S GFGFV + + E+A+ A++ +N + G+ + V +A
Sbjct: 212 SAFGNTLSVKVM-MDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+Y+G+L VT ML + FS G ++S +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFEVIKGRPIRI 84
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+D L K +G + +V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 8/175 (4%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
SEF VYI N ++D++ L + ++G +V+ D +G+S+ F FV + E A
Sbjct: 464 SEFTN-VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAK 521
Query: 138 AVIEKLNGTEIGGREIKVNITEKPL-VQVDLSLL--QAEDSNFVDSPY-KVYVGNLAKTV 193
+E++NG +I G+ I V +K + Q +L + Q ++ K+YV NL T+
Sbjct: 522 KAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTI 581
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
E L+K FS G + KV++ G SK GFG + FSS EDA A++ +N +L
Sbjct: 582 DDEKLRKEFSSFGSISRVKVMQEEGQSK--GFGLICFSSPEDALKAMTEMNGRIL 634
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L + G + ++V+ D S+ +AFV + A+ IE++
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 434
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + G KV + Q + L+++ S F + VY+ N + E LK FS
Sbjct: 435 NGKLLQG--CKVFVGRFKSRQDREAELRSKASEFTN----VYIKNFGGDMDDERLKDVFS 488
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ + KS GFGFV+F S E A+ A+ +N + GQ I V +A
Sbjct: 489 KYGKTLSVKVM-TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARA 542
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 178 VDSPYKV---YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
V++ Y++ YVG+L VT ++L + FS G VLS ++ R T +S G+ +V F
Sbjct: 280 VEAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLA 339
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
DA+ A+ ++N +++G+ IR+
Sbjct: 340 DAQKALDTMNFDVIQGKSIRL 360
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++Y+ N+ ID+++L K G++ + +V+ ++ G+S+ F + + EDA + +
Sbjct: 571 KLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDALKAMTE 628
Query: 143 LNGTEIGGREIKVNITEK 160
+NG +G + + + + ++
Sbjct: 629 MNGRILGSKPLSIALAQR 646
>gi|345484300|ref|XP_003424998.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor
half pint-like [Nasonia vitripennis]
Length = 605
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 6/178 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ + +D T + + FAFV + E A +E+
Sbjct: 123 RVYVGSISFELKEDTIRQAFLPFGPIKSINMSWDPATQKHKGFAFVEYEIPEAAQLALEQ 182
Query: 143 LNGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
+NG IGGR IKV + P Q + + E ++ ++Y+ ++ + +T E +K
Sbjct: 183 MNGVMIGGRNIKVVGRPSNMPQAQSVIDEITEESKHY----NRIYIASIHQDLTEEDIKS 238
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G + K+ + + G+GF+ + S + A AI+S+N L GQ +RV +A
Sbjct: 239 VFEAFGPITYCKLAQGSSPHRHKGYGFIEYESMQSALEAIASMNLFDLGGQYLRVGRA 296
>gi|223948725|gb|ACN28446.1| unknown [Zea mays]
gi|414869520|tpg|DAA48077.1| TPA: mRNA 3-UTR binding protein [Zea mays]
Length = 446
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GN+ N+ L ++ Q G VE+ ++I + + F FV A I
Sbjct: 70 CRSVYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKS----SFGFVDYYDRRSAALAI 125
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
L+G + G+ IKVN + Q ED++ + ++VG+L+ V L
Sbjct: 126 MTLHGRHVYGQAIKVNWA--------YASTQREDTS---GHFHIFVGDLSSEVNDATLYA 174
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S G+GFV+F ++++AE AI+ + L ++IR N A
Sbjct: 175 CFSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWA 232
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A+ A +S+ DT F +++G++ +++ L + + A V++D TG
Sbjct: 137 AIKVNWAYASTQREDTSGHF--HIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTG 194
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT------EKPLVQVDLSLL---- 170
RSR + FV + ++A I ++ G +G R+I+ N EKP +++
Sbjct: 195 RSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWATKNNSEEKPETDNHNAVVLTNG 254
Query: 171 --------QAEDSNFVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
++D+ + P VYVGNL V + L + F G V + + +RV
Sbjct: 255 SSNNSATDASQDAGSKEPPQNNPDCTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRV 313
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ GFGFV +S+ +A AI N S++ G+ I+
Sbjct: 314 ---QQDKGFGFVRYSTHGEAALAIQMSNGSVVRGKPIKC 349
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+ ++ DEL + G A+E+ V DK F FV T +A I+
Sbjct: 282 VYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQDK------GFGFVRYSTHGEAALAIQ 335
Query: 142 KLNGTEIGGREIKVNITEKP 161
NG+ + G+ IK + KP
Sbjct: 336 MSNGSVVRGKPIKCSWGVKP 355
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 90/173 (52%), Gaps = 32/173 (18%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ +E+T++ + +G V V+ +++AFV M+ E+A +E
Sbjct: 2 KIFVGNVDDRTTQEEITELFERYGTVVNCAVM--------KQYAFVHMRGAEEATKAVED 53
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
LNG E+ G+++ V ++ KP Q + +K++VGN++ + ++K F
Sbjct: 54 LNGRELNGKKMLVELS-KPRPQ---------------NTWKIFVGNVSSSCEGSEIRKIF 97
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
E G+V+ +++ + FV + E +A AAI +LN ++G+RI V
Sbjct: 98 EEYGRVVECDIVK--------DYAFVHMTRESEARAAIEALNGKEIKGKRINV 142
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + + E+ KI +E+G V + +++ D +AFV M +A A IE
Sbjct: 78 KIFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKD--------YAFVHMTRESEARAAIEA 129
Query: 143 LNGTEIGGREIKVNITEK 160
LNG EI G+ I V ++ K
Sbjct: 130 LNGKEIKGKRINVEMSHK 147
>gi|226528727|ref|NP_001148487.1| mRNA 3-UTR binding protein [Zea mays]
gi|195619730|gb|ACG31695.1| mRNA 3-UTR binding protein [Zea mays]
Length = 447
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
R VY+GN+ N+ L ++ Q G VE+ ++I + + F FV A I
Sbjct: 71 CRSVYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKS----SFGFVDYYDRRSAALAI 126
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
L+G + G+ IKVN + Q ED++ + ++VG+L+ V L
Sbjct: 127 MTLHGRHVYGQAIKVNWA--------YASTQREDTS---GHFHIFVGDLSSEVNDATLYA 175
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
CFS A+V+ T +S G+GFV+F ++++AE AI+ + L ++IR N A
Sbjct: 176 CFSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAIAEMTGKWLGSRQIRCNWA 233
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A+ A +S+ DT F +++G++ +++ L + + A V++D TG
Sbjct: 138 AIKVNWAYASTQREDTSGHF--HIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTG 195
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT------EKPLVQVDLSLL---- 170
RSR + FV + ++A I ++ G +G R+I+ N EKP +++
Sbjct: 196 RSRGYGFVSFRNQQEAETAIAEMTGKWLGSRQIRCNWATKNNSEEKPETDNHNAVVLTNG 255
Query: 171 --------QAEDSNFVDSPYK------VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV 216
++D+ + P VYVGNL V + L + F G V + + +RV
Sbjct: 256 SSNNSATDASQDAGSKEPPQNNPDCTTVYVGNLGHEVNRDELHRHFYNLG-VGAIEEVRV 314
Query: 217 PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ GFGFV +S+ +A AI N S++ G+ I+
Sbjct: 315 ---QQDKGFGFVRYSTHGEAALAIQMSNGSVVRGKPIKC 350
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
VY+GN+ ++ DEL + G A+E+ V DK F FV T +A I+
Sbjct: 283 VYVGNLGHEVNRDELHRHFYNLGVGAIEEVRVQQDK------GFGFVRYSTHGEAALAIQ 336
Query: 142 KLNGTEIGGREIKVNITEKP 161
NG+ + G+ IK + KP
Sbjct: 337 MSNGSVVRGKPIKCSWGVKP 356
>gi|255642249|gb|ACU21389.1| unknown [Glycine max]
Length = 452
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 39/263 (14%)
Query: 26 FQSRQPILQ---IRFPKLSYSL---HNLKTASIEDSTT---RLF--AVAEETASSSSSSV 74
FQS P+ IR K SY H+ +A++ T +L+ A+ A ++SS
Sbjct: 75 FQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSRE 134
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DT F +++G++ + + L + + A V++D TGRS+ + FV + +
Sbjct: 135 DTSGHF--NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQ 192
Query: 135 DANAVIEKLNGTEIGGREI----------------KVNITEKPLVQVDLSLLQAEDSNFV 178
DA + I + G +G R+I K+N ++ +V + S +D+N
Sbjct: 193 DAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNNNE 252
Query: 179 DSP------YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232
D+P VYVGNL VT L F L A V+ + GFGFV +++
Sbjct: 253 DAPDNNPSYTTVYVGNLPHDVTQAELHCQF----HALGAGVIEEVRVQRDKGFGFVRYNT 308
Query: 233 EEDAEAAISSLNNSLLEGQRIRV 255
++A AI N L+ G+ ++
Sbjct: 309 HDEAALAIQMANGRLVRGKNMKC 331
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 73 SVDTPSEF----ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFV 128
S + P F R VY+GNI N+ + L ++ Q G + ++I + + + FV
Sbjct: 42 SGNVPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKS----SYGFV 97
Query: 129 MMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGN 188
A I L+G ++ G+ +KVN + D S + ++VG+
Sbjct: 98 DYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTS-----------GHFNIFVGD 146
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+ VT L CFS A+V+ T +S G+GFV+F +DA++AI+ + L
Sbjct: 147 LSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWL 206
Query: 249 EGQRIRVNKA 258
++IR N A
Sbjct: 207 GNRQIRCNWA 216
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+GN+P ++ EL Q H A VI + R + F FV T ++A I+
Sbjct: 264 VYVGNLPHDVTQAELH--CQFH--ALGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMA 319
Query: 144 NGTEIGGREIKVNITEKP 161
NG + G+ +K + KP
Sbjct: 320 NGRLVRGKNMKCSWGSKP 337
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L + G + +V+ D+ G+S+ F FV + EDA ++++
Sbjct: 168 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEM 226
Query: 144 NGTEIGGREIKVNITEKP---LVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
NG E+ G+ I V +K ++ Q +D + +YV NL + E L+
Sbjct: 227 NGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQ 286
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
K FS G + S KV+ G SK GFGFV FSS E+A A+S +N ++
Sbjct: 287 KEFSPFGTITSTKVMTEGGRSK--GFGFVCFSSPEEATKAVSEMNGRIV 333
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ + IDN L G + +V+ D+ S+ FV +T E A IEK+
Sbjct: 76 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDE--NGSKGHGFVHFETEEAAERAIEKM 133
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + E L F
Sbjct: 134 NGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTN-------VYIKNFGDRMDDETLNGLF 186
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
GQ+LS KV+ G KS GFGFV+F EDA+ A+ +N L G+ I V +A
Sbjct: 187 GRFGQILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA 241
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
ML + FS G +LS +V R T +S G+ V F DAE A+ ++N +++G+ +R+
Sbjct: 1 MLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRI 59
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + +V+ + GRS+ F FV + E+A + ++
Sbjct: 271 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTE--GGRSKGFGFVCFSSPEEATKAVSEM 328
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 329 NGRIVATKPLYVALAQR 345
>gi|444318191|ref|XP_004179753.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
gi|387512794|emb|CCH60234.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
Length = 403
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 61 AVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG 120
A EE++ S D SE +++G + +ID++ L + G V A VIY+K T
Sbjct: 141 ADDEESSESKKQKPDE-SEEPATIFVGRLSWSIDDEWLKTEFEPIGGVLSARVIYEKGTD 199
Query: 121 RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVD 179
RSR + +V K A I+++ G EI GR I ++ T KP S F D
Sbjct: 200 RSRGYGYVDFKNKTFAEKAIKEMQGKEIDGRPINCDMSTSKP-----ASNGGDRAKKFGD 254
Query: 180 SPYK----VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235
+P + +++GNL+ + + + FS+ G+++S ++ P T + GFG+V + E
Sbjct: 255 TPSEPSETLFLGNLSFDADRDNIYEVFSKYGEIISVRIPTHPETEQPKGFGYVQYGDVES 314
Query: 236 AEAAISSLNNSLLEGQRIRVN 256
A+ A+ +L + + +R++
Sbjct: 315 AKKALDALQGEYINNRPVRLD 335
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ + D D + ++ ++G + + T + + F +V VE
Sbjct: 254 DTPSEPSETLFLGNLSFDADRDNIYEVFSKYGEIISVRIPTHPETEQPKGFGYVQYGDVE 313
Query: 135 DANAVIEKLNGTEIGGREIKVNITEKPLVQVD 166
A ++ L G I R ++++ + P Q D
Sbjct: 314 SAKKALDALQGEYINNRPVRLDFS-TPRPQND 344
>gi|119174082|ref|XP_001239402.1| hypothetical protein CIMG_09023 [Coccidioides immitis RS]
Length = 485
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVED 135
P R +Y+G + + D L +I + G V+ ++I DK + + + FV
Sbjct: 87 PEPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNFQSKGLNYGFVEYDDPGA 146
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTV 193
A ++ LNG + EI+VN Q+ ++N D+ + ++VG+L+ V
Sbjct: 147 AERAMQTLNGRRVHQSEIRVNWA-----------YQSNNANKEDTSNHFHIFVGDLSNEV 195
Query: 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253
E+L + FS G V A+V+ T +S G+GFV F DAE A+SS++ L + I
Sbjct: 196 NDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAI 255
Query: 254 RVNKA 258
R N A
Sbjct: 256 RCNWA 260
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TP ++ Y+GN+ ++L + Q G V + D R FAFV M T E+
Sbjct: 305 TP-QWQTTCYVGNLTPYTTQNDLVPLFQNFGYVVETRFQAD------RGFAFVKMDTHEN 357
Query: 136 ANAVIEKLNGTEIGGREIKVNITE--KPLVQVDLSLLQAEDSNF--VDSPYKVYVGNLAK 191
A I +LNG + GR +K + + P Q D S Q + F SPY G
Sbjct: 358 AAMAICQLNGYNVNGRPLKCSWGKDRPPTGQFDYSPQQGANPAFNSGTSPYFPQYGGPGG 417
Query: 192 TVTSE 196
+T +
Sbjct: 418 PMTPQ 422
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 13/172 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ N+ +L ++ G V V D T RS +A+V V DA ++ L
Sbjct: 26 LYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAERALDTL 85
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T+I G+ ++ + D S+ ++ N +++ NL KTV + L FS
Sbjct: 86 NYTQIKGKACRIMWKHR-----DPSIRKSGAGN-------IFIKNLDKTVDTRTLHDTFS 133
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ G +LS KV + + S GFGFV F + E+A AIS +N LLE +R+ V
Sbjct: 134 QFGNILSCKV-SMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFV 184
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 97/185 (52%), Gaps = 20/185 (10%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N P N+ +D+ K + +G + +++ K G S+ F FV K +DA E++
Sbjct: 205 VYVKNFPDNVSDDDFRKSFERYGEITSCKIMR-KEDGTSKCFGFVNFKEADDAKKCCEEM 263
Query: 144 NGTE-IGG-REIKVNITEKPLVQVD--------LSLLQAEDSNFVDSPYKVYVGNLAKTV 193
NG + GG R+I EK + + + + + +++ V+ +Y+ NL T+
Sbjct: 264 NGQKPFGGERDIYAGRAEKESERKEKLKKKYDQIRMERLKNNQLVN----LYIKNLDDTI 319
Query: 194 TSEMLKKCFSEKGQVLSAKVLR---VPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250
E L++ F + G + SAKV+R P SK GFGFV F+ E+A A++++N ++
Sbjct: 320 DDEKLRQTFEQFGTITSAKVMRDKDRPEVSK--GFGFVCFAQPEEATRAVTAMNGQMVGT 377
Query: 251 QRIRV 255
+ I V
Sbjct: 378 KPIYV 382
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR-SRRFAFVMMKTVEDANAVIEK 142
+YI N+ ID+++L + ++ G + A+V+ DK S+ F FV E+A +
Sbjct: 310 LYIKNLDDTIDDEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTA 369
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFV 178
+NG +G + I V + + ++ + Q + N +
Sbjct: 370 MNGQMVGTKPIYVALHQPIEIRRQMQAAQGQRQNLL 405
>gi|121705054|ref|XP_001270790.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
gi|119398936|gb|EAW09364.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
Length = 514
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 11/204 (5%)
Query: 64 EETASSSSSSVDTPSEFAR--RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
EE+AS+ S E ++IGN+ N+D D L + + G + ++ D+ +GR
Sbjct: 240 EESASTPKKSKQAEEETGASANLFIGNLSWNVDEDWLRQEFETFGELSGVRIVTDRDSGR 299
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN-ITEKPLVQVDLSLLQ----AEDSN 176
SR F +V + DA + TE+ GR+I ++ T +P Q A +
Sbjct: 300 SRGFGYVEYVSAADAAKAYKAKKDTELDGRKINLDYATGRPANNQQGGGFQDRAQARARS 359
Query: 177 FVD--SPYK--VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232
F D SP ++VGNL + + +++ F EKG ++ ++ P + + GFG+V F+S
Sbjct: 360 FGDQSSPESDTLFVGNLPFSANEDSVQELFGEKGSIVGIRLPTDPDSGRPKGFGYVQFAS 419
Query: 233 EEDAEAAISSLNNSLLEGQRIRVN 256
++A A +SLN + L+G+ +R++
Sbjct: 420 VDEAREAFNSLNGAELDGRPVRLD 443
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 45 HNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQE 104
+N + +D R A A SS DT +++GN+P + + D + ++ E
Sbjct: 342 NNQQGGGFQD---RAQARARSFGDQSSPESDT-------LFVGNLPFSANEDSVQELFGE 391
Query: 105 HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKP 161
G++ + D +GR + F +V +V++A LNG E+ GR ++++ T +P
Sbjct: 392 KGSIVGIRLPTDPDSGRPKGFGYVQFASVDEAREAFNSLNGAELDGRPVRLDFSTPRP 449
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 90/173 (52%), Gaps = 32/173 (18%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ +E+T++ + +G V V+ +++AFV M+ E+A +E
Sbjct: 9 KIFVGNVDDRTTQEEITELFERYGTVVNCAVM--------KQYAFVHMRGAEEATKAVED 60
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
LNG E+ G+++ V ++ KP Q + +K++VGN++ + ++K F
Sbjct: 61 LNGRELNGKKMLVELS-KPRPQ---------------NTWKIFVGNVSSSCEGSEIRKIF 104
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
E G+V+ +++ + FV + E +A AAI +LN ++G+RI V
Sbjct: 105 EEYGRVVECDIVK--------DYAFVHMTRESEARAAIEALNGKEIKGKRINV 149
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + + E+ KI +E+G V + +++ D +AFV M +A A IE
Sbjct: 85 KIFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKD--------YAFVHMTRESEARAAIEA 136
Query: 143 LNGTEIGGREIKVNITEK 160
LNG EI G+ I V ++ K
Sbjct: 137 LNGKEIKGKRINVEMSHK 154
>gi|363750866|ref|XP_003645650.1| hypothetical protein Ecym_3344 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889284|gb|AET38833.1| Hypothetical protein Ecym_3344 [Eremothecium cymbalariae
DBVPG#7215]
Length = 421
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I+ D L + Q G + +V+ DK +AFV DAN +
Sbjct: 63 RILYVGNLDKAINEDTLKQYFQVGGPIANVKVLVDK-NNEEANYAFVEYHQPHDANVAFQ 121
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
L+G +I G IK+N Q++ + D+ + ++VG+L V E L
Sbjct: 122 TLDGKQIEGNVIKINWA-----------FQSQHVSSDDT-FNLFVGDLNVDVDDETLTGT 169
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E + A V+ + +S G+GFV+FS ++ A+ A+ S +L G+ IR+N A
Sbjct: 170 FKEFPSFIQAHVMWDMLSGRSRGYGFVSFSEQDVAQQAMESKQGFILNGRAIRINWA 226
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G++ ++D++ LT +E + +A V++D +GRSR + FV + A +E
Sbjct: 152 LFVGDLNVDVDDETLTGTFKEFPSFIQAHVMWDMLSGRSRGYGFVSFSEQDVAQQAMESK 211
Query: 144 NGTEIGGREIKVNITEK 160
G + GR I++N K
Sbjct: 212 QGFILNGRAIRINWASK 228
>gi|367026720|ref|XP_003662644.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
gi|347009913|gb|AEO57399.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
Length = 500
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
P R +Y+G + + D L +I + G V+ ++I DK + + FV A
Sbjct: 85 PEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDK-NAKGYNYGFVEYDDPGAA 143
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP--YKVYVGNLAKTVT 194
++ LNG + EI+VN Q+ +SN D+ + ++VG+L+ V
Sbjct: 144 ERAMQTLNGRRVHQSEIRVNWA-----------YQSNNSNKEDTSNHFHIFVGDLSNEVN 192
Query: 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254
E+L + FS G + A+V+ T +S G+GFV F DAE A+SS++ L + IR
Sbjct: 193 DEVLFQAFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIR 252
Query: 255 VNKA 258
N A
Sbjct: 253 CNWA 256
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
Y+GN+ ++ + Q G V ++ D R FAF+ M T E+A I +L
Sbjct: 308 CYVGNLTPYTTQTDIVPLFQNFGFVVESRFQAD------RGFAFIKMDTHENAAMAICQL 361
Query: 144 NGTEIGGREIKV 155
NG + GR +K
Sbjct: 362 NGYNVNGRPLKC 373
>gi|308480880|ref|XP_003102646.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
gi|308261080|gb|EFP05033.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
Length = 358
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 12/185 (6%)
Query: 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV 133
+DT F V++G++ +++ N+ L Q++G V +A+VI D T +S+ + FV
Sbjct: 127 IDTSKHF--HVFVGDLSKDVSNELLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNK 184
Query: 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVD---LSLLQAEDSNFVDSPYKVYVGNLA 190
++A I +NG IG R ++ N + + + L+ Q +S D+ VYVGN++
Sbjct: 185 QNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADN-TSVYVGNIS 243
Query: 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250
+ T L++ FS G + +V K+ + FV + +E A AI +N L G
Sbjct: 244 QQTTETDLRESFSTYGDIAEVRVF------KTQRYAFVRYDKKECATKAIMEMNGKELTG 297
Query: 251 QRIRV 255
++R
Sbjct: 298 NQVRC 302
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 53/77 (68%)
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+ V+VG+L+K V++E+LK F + G+V AKV+R T KS G+GFV+F ++++AE AI+
Sbjct: 133 FHVFVGDLSKDVSNELLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIA 192
Query: 242 SLNNSLLEGQRIRVNKA 258
+N + + +R N A
Sbjct: 193 GMNGKWIGKRAVRTNWA 209
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N N+ +++L + G V+ D+ GRSR F FV EDA ++++
Sbjct: 193 IYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDE-KGRSRGFGFVNYAHHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G+ I V +K L Q +L L Q + +YV NL ++ E
Sbjct: 252 NGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRY--QGVNLYVKNLDDSIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPYGTITSAKVMTEAGQSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I NI +IDN L G + +V+ D+ S+ + FV +T E AN IE +
Sbjct: 101 IFIKNIDDSIDNKALYDTFSAFGNILSCKVVCDERG--SKGYGFVHFETQEAANRAIETM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +V+ + +N +Y+ N +T E LK+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREVEFGTKVMKFTN-------IYIKNFGDNLTDEKLKEAF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G+ LS +V+R +S GFGFV ++ EDA+ A+ +N + G+ I V +A
Sbjct: 212 SAFGKTLSVRVMR-DEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRA 266
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G ++S +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NYDVIKGRPIRI 84
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID++ L K +G + A+V+ + G+S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDSIDDERLRKEFSPYGTITSAKVMTE--AGQSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++ID+ L + G + +V D +G+S+ + FV T E A I+KL
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + +++ V P V E F + VYV NL+++++ E L K F
Sbjct: 194 NGMLLNDKQVYVG----PFVHKLQRDPSGEKVKFTN----VYVKNLSESLSDEELNKVFG 245
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
E G S ++R G KS GFGFV F + +DA A+ +LN + + V KA
Sbjct: 246 EFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + + +L + + G V V D T RS + +V T +DA+ + +L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + GR I+V + + D SL ++ N +++ NL K++ + L + FS
Sbjct: 107 NFMALNGRAIRVMYSVR-----DPSLRKSGVGN-------IFIKNLDKSIDHKALHETFS 154
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G +LS KV P + +S G+GFV + ++E A+ AI LN LL +++ V
Sbjct: 155 AFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG 206
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ ++ ++EL K+ E G ++ D G+S+ F FV + +DA ++ L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 284
Query: 144 NGTEIGGREIKVNITEKP------LVQ-VDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG +E V +K L Q + SL +A D + +YV NL ++VT +
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKS---QGSNLYVKNLDESVTDD 341
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L++ F+ G + S KV+R P + S G GFV FS+ E+A AI+ +N ++
Sbjct: 342 KLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
>gi|409049565|gb|EKM59042.1| hypothetical protein PHACADRAFT_169505 [Phanerochaete carnosa
HHB-10118-sp]
Length = 578
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 10/178 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + N+DND L E G V A V D+ TG+SR F FV + E + +E L
Sbjct: 311 IFVGKLSWNVDNDWLESEFAECGEVVSARVQMDRNTGKSRGFGFVTFASPEAVDKALE-L 369
Query: 144 NGTEIGGREIKVNIT-EKPLVQVDLSLLQAEDSNFVDS---PYKV-YVGNLAKTVTSEML 198
NG EI GR I ++ + EK QV +A F D+ P V +VGNL+ T + L
Sbjct: 370 NGKEIDGRPINIDKSVEKDQNQVRERRAKA----FGDATSAPSSVLFVGNLSFDATEDQL 425
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ FS+ G V S ++ + + GFG+V F E A+ A L + G+ +R++
Sbjct: 426 WEVFSDYGSVKSVRMPTDRESGRPKGFGYVEFEDVESAKKAHEGLAGQEIAGRAVRLD 483
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
++VG L+ V ++ L+ F+E G+V+SA+V T KS GFGFVTF+S E + A+ L
Sbjct: 311 IFVGKLSWNVDNDWLESEFAECGEVVSARVQMDRNTGKSRGFGFVTFASPEAVDKAL-EL 369
Query: 244 NNSLLEGQRIRVNK 257
N ++G+ I ++K
Sbjct: 370 NGKEIDGRPINIDK 383
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 67 ASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
A+S+ SSV +++GN+ + D+L ++ ++G+V+ + D+ +GR + F
Sbjct: 403 ATSAPSSV---------LFVGNLSFDATEDQLWEVFSDYGSVKSVRMPTDRESGRPKGFG 453
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159
+V + VE A E L G EI GR ++++ ++
Sbjct: 454 YVEFEDVESAKKAHEGLAGQEIAGRAVRLDFSQ 486
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.127 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,243,620,825
Number of Sequences: 23463169
Number of extensions: 118366275
Number of successful extensions: 415800
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 16787
Number of HSP's successfully gapped in prelim test: 8954
Number of HSP's that attempted gapping in prelim test: 341770
Number of HSP's gapped (non-prelim): 60876
length of query: 258
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 119
effective length of database: 9,097,814,876
effective search space: 1082639970244
effective search space used: 1082639970244
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.5 bits)