BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025070
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 290 bits (743), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 161/181 (88%)
Query: 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDAN 137
E ARR+Y+GNIPRN++NDEL IV+EHGA+E AEV+YDKY+GRSRRF FV MKTVEDAN
Sbjct: 80 GEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDAN 139
Query: 138 AVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
AVIEKLN TEIGGR+IKVNITEKPL +D++ QAEDS FV+SPYKVY+GNLAKTVT+E+
Sbjct: 140 AVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNEL 199
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
LK FSEKG+VL AKV R PGTSKS+GFGFV+FSSEE+ EAAI +LNNS+LEGQ+IRVNK
Sbjct: 200 LKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259
Query: 258 A 258
A
Sbjct: 260 A 260
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 117/179 (65%), Gaps = 3/179 (1%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GN+P ++ + +L++I E G V E++YD+ T RSR FAFV M +VE+A I
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 143 LNGTEIGGREIKVNITEKPLV---QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+G+++GGR +KVN E P +V + +++ FVDSP+K+YV NL+ +TS+ L+
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+++ +SAKV+ + +S GFGF+TFSS E +A+ ++N LEG+ +R+N A
Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D+ L + + G VE EVIYDK TGRSR F FV M T E+ A ++
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPY 182
NG EI GR I+VN P + + S N VDS
Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 207
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
+VYVGNL+ V LK+ FSE+G V+ AKV+ + +S GFGFVT+SS ++ AI S
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+ IRV+ A
Sbjct: 268 LNGVDLDGRSIRVSAA 283
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267
Query: 143 LNGTEIGGREIKVNITEK 160
LNG ++ GR I+V+ E+
Sbjct: 268 LNGVDLDGRSIRVSAAEE 285
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 62 VAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
V++E P E A+ +++GN+P ++D+++L I G VE AEVIY++ T R
Sbjct: 36 VSDEGGVEGGQGFSEPPEEAK-LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR 94
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP 181
SR F FV M TVE+A +E LNG ++ GR++ VN S +A +F S
Sbjct: 95 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP-----RGSPERAPRGDFEPS- 148
Query: 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241
+VYVGNL V + L++ FSE G+V+SA+V+ T +S GFGFVT SSE + AI+
Sbjct: 149 CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIA 208
Query: 242 SLNNSLLEGQRIRVNKA 258
+L+ L+G+ +RVN A
Sbjct: 209 ALDGQTLDGRAVRVNVA 225
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+P ++D L ++ EHG V A V+ D+ TGRSR F FV M + + N I
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR ++VN+ E+
Sbjct: 210 LDGQTLDGRAVRVNVAEE 227
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D+ L + + G VE EVIYDK +GRSR F FV M T E+ A ++
Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPY 182
NG EI GR I+VN P + + S N VDS
Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 208
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
+VYVGNL+ V LK+ FSE+G V+ AKV+ + +S GFGFVT+SS ++ AI S
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268
Query: 243 LNNSLLEGQRIRVNKA 258
LN L+G+ IRV+ A
Sbjct: 269 LNGIDLDGRSIRVSAA 284
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268
Query: 143 LNGTEIGGREIKVNITEK 160
LNG ++ GR I+V+ E+
Sbjct: 269 LNGIDLDGRSIRVSAAEE 286
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 13/189 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +V + A ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 143 LNGTEIGGREIKVNITEKPLVQVD-------------LSLLQAEDSNFVDSPYKVYVGNL 189
NG E+ GR ++VN P + D S + S +VYVGNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249
+ V L+ FSE+G+V+ A+V+ + +S GFGFVT+ S ++ + AI SL+ + L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 250 GQRIRVNKA 258
G++IRV++A
Sbjct: 272 GRQIRVSEA 280
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D+ L + E G V +A VIYD+ +GRS+ F FV + ++ I+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR+I+V+ E
Sbjct: 265 LDGADLDGRQIRVSEAE 281
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY-KVYVGNLAKTVTSEMLKKC 201
NG E+ GR ++VN P + + S +VYVGNLA V + L+
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETL 207
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FSE+G+V+ AKV+ + +S GFGFVT+SS E+ AI SL+ L G+ IRV+ A
Sbjct: 208 FSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR I+V+ E
Sbjct: 249 LDGVDLNGRAIRVSPAE 265
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 113/182 (62%), Gaps = 7/182 (3%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PSE A+ +++GN+P +ID++ L ++ Q+ G VE AEVIY++ T RSR F FV M TVE+A
Sbjct: 93 PSEDAK-LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEA 151
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
+ +E + ++ GR + VN + + + + + Y++YVGN+ +
Sbjct: 152 DKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT------YRIYVGNIPWDIDDA 205
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L++ FSE G+V+SA+V+ + +S GFGFVT SSE + AI++L+ L+G+ IRVN
Sbjct: 206 RLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265
Query: 257 KA 258
A
Sbjct: 266 AA 267
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GNIP +ID+ L ++ EHG V A V++D+ +GRSR F FV M + + + I
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 143 LNGTEIGGREIKVNITEK 160
L+G + GR I+VN E+
Sbjct: 252 LDGQTLDGRTIRVNAAEE 269
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 108/176 (61%), Gaps = 6/176 (3%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+P ++D++ L ++ ++ G VE AEVIY++ T +SR F FV M TVE+A +E
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
N ++ GR + VN + + + E S Y++YVGN+ + L++ F
Sbjct: 197 YNRYDVNGRLLTVNKAARRGERPERPPRTFEQS------YRIYVGNIPWGIDDARLEQLF 250
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
SE G+V+SA+V+ T +S GFGFVT +SE + AI++L+ L+G+ IRVN A
Sbjct: 251 SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+GNIP ID+ L ++ EHG V A V+YD+ TGRSR F FV M + + + I
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 143 LNGTEIGGREIKVNITE 159
L+G + GR I+VN+ E
Sbjct: 291 LDGQSLDGRTIRVNVAE 307
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 108/191 (56%), Gaps = 23/191 (12%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++++GN+ + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 143 LNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY---------------KVYVG 187
NG E+ GR ++VN P + E+S+F ++ +VYVG
Sbjct: 148 FNGYELDGRALRVNSGPPPE--------KRENSSFRENSSFRGGSRGGGSFDSSNRVYVG 199
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NLA V + L+ FSE+G+V+ AKV+ + +S GFGFVT+SS E+ AI SL+
Sbjct: 200 NLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVD 259
Query: 248 LEGQRIRVNKA 258
L G+ IRV+ A
Sbjct: 260 LNGRAIRVSPA 270
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 143 LNGTEIGGREIKVNITE 159
L+G ++ GR I+V+ E
Sbjct: 255 LDGVDLNGRAIRVSPAE 271
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 9/195 (4%)
Query: 65 ETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
E A S + PSE A+ +++GN+ ++++ L + ++ G VE AEVIY++ T +SR
Sbjct: 134 EGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 192
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YK 183
F FV M +V++A +EK N ++ GR + VN + + E + V P ++
Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-------KAAPRGSRPERAPRVYEPAFR 245
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
VYVGNL V + L++ FSE G+V+ A+V+ T +S GFGFVT S ++ AIS+L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 244 NNSLLEGQRIRVNKA 258
+ LEG+ IRVN A
Sbjct: 306 DGQNLEGRAIRVNVA 320
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 139 VIEKLNGTEIGGREIKVNITEK 160
I L+G + GR I+VN+ E+
Sbjct: 301 AISALDGQNLEGRAIRVNVAEE 322
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 25/202 (12%)
Query: 68 SSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFA 126
+SSS+ V T S+ V++G++ I +++ G + A V+ D TG+S+ +
Sbjct: 91 TSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYG 150
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLSLLQAE 173
FV DA I+++ G +GGR+I+ N T KP + D + Q+
Sbjct: 151 FVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSS 210
Query: 174 DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233
+N VY G + +T +++++ FS GQ++ +V G+ FV FSS
Sbjct: 211 PNNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSSH 259
Query: 234 EDAEAAISSLNNSLLEGQRIRV 255
E A AI S+N + +EG ++
Sbjct: 260 ESAAHAIVSVNGTTIEGHVVKC 281
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++G + +ID++ L K + G V A VIY++ T RSR + +V + A I+++
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 144 NGTEIGGREIKVNI-TEKPLVQVDLSLLQAEDSNFVDSPYK----VYVGNLAKTVTSEML 198
G EI GR I ++ T KP D + F D+P + +++GNL+ + +
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRA------KKFGDTPSEPSDTLFLGNLSFNADRDAI 283
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
+ F++ G+V+S ++ P T + GFG+V FS+ EDA+ A+ +L ++ + +R++
Sbjct: 284 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237
+ P ++VG L+ ++ E LKK F G V+ A+V+ GT +S G+G+V F ++ AE
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 223
Query: 238 AAISSLNNSLLEGQRIRVN 256
AI + ++G+ I +
Sbjct: 224 KAIQEMQGKEIDGRPINCD 242
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
DTPSE + +++GN+ N D D + ++ +HG V + T + + F +V +E
Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 319
Query: 135 DANAVIEKLNGTEIGGREIKVNIT 158
DA ++ L G I R ++++ +
Sbjct: 320 DAKKALDALQGEYIDNRPVRLDFS 343
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138
E + +Y+GN+ R++ + ++ + G + ++I D T + + FV A A
Sbjct: 4 EMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAA 61
Query: 139 VIEKLNGTEIGGREIKVNITEKPLVQV-DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
+ +NG +I G+E+KVN P Q D S + + V+VG+L+ +T+E
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
+K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 258 A 258
A
Sbjct: 182 A 182
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 63 AEETASSSSSSVDTP-SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR 121
+++ +SSS+ V T S+ V++G++ I +++ G + A V+ D TG+
Sbjct: 86 SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145
Query: 122 SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPL------------VQVDLS 168
S+ + FV DA I+++ G +GGR+I+ N T KP + D
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEV 205
Query: 169 LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228
+ Q+ SN VY G + +T +++++ FS GQ++ +V G+ FV
Sbjct: 206 VNQSSPSNCT-----VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFV 254
Query: 229 TFSSEEDAEAAISSLNNSLLEGQRIRV 255
F+S E A AI S+N + +EG ++
Sbjct: 255 RFNSHESAAHAIVSVNGTTIEGHVVKC 281
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134
+TP+ VY+ N+P+ I DEL K + G + A V+ D+ +G SR F FV + E
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTE 280
Query: 135 DANAVIEKLNGTEIG------GREIKVNITEKPLVQVDLSLLQAEDSNFVDSP-YKVYVG 187
A + +EK+NG +G GR K + E+ L + Q + F S +Y+
Sbjct: 281 AAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRR---KFEQERINRFEKSQGANLYLK 337
Query: 188 NLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL 247
NL +V E LK+ FSE G V S+KV+ P S GFGFV +S+ E+A A+S +N +
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKM 396
Query: 248 L 248
+
Sbjct: 397 I 397
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y G++ + L + + V V D+ RS +A++ DA +E L
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T + R I++ ++ + + S + +++ NL ++ ++ L + FS
Sbjct: 110 NYTPLFDRPIRIMLSNR------------DPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + T +S G+GFV F EE A+AAI LN L+ +++ V
Sbjct: 158 SFGTILSCKVA-MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++D+++L ++ E+G V ++V+ + G SR F FV E+A + ++
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEM 392
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + + + ++
Sbjct: 393 NGKMIGRKPLYIALAQR 409
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N +D++ L ++ + G +V+ D G+S+ F FV + EDAN +E++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG EI G+ I V +K + Q +L L Q S + +Y+ NL T+ E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQG--VNLYIKNLDDTIDDEK 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L G + +V+ D+ S+ +AFV +T E A+ IEK+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + V E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-------VYIKNFGEEVDDESLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G+ LS KV+R P KS GFGFV++ EDA A+ +N + G+ I V +A
Sbjct: 212 SQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G VLS +V R T +S G+ +V F DAE A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFDVIKGKPIRI 84
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI N+ ID+++L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGSKPLYVALAQR 370
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKV---YVGNLAKTVTSEM 197
NG E+ G++I V +K + ++ + Q + Y+V YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR--YQVVNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ ++I+N L V G + V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + GR++ V + + +L E N VY+ N + + E LK F
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVED 135
TPS +Y+G++ ++ L + G + + D T S +A+V + +D
Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 136 ANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTS 195
A ++ +N I G+ +++ +++ D SL ++ N ++V NL K++ +
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFVKNLDKSINN 112
Query: 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ L S G +LS V V + S G+GFV F + E AE AI +N LL G+++ V
Sbjct: 113 KALYDTVSAFGNILSCNV--VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Query: 256 NK 257
+
Sbjct: 171 GQ 172
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ + I D L + Q G + +++ DK ++ +AFV DAN ++
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 133
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
LNG +I +K+N Q++ S+ D+ + ++VG+L V E L+
Sbjct: 134 TLNGKQIENNIVKINWA-----------FQSQQSSSDDT-FNLFVGDLNVNVDDETLRNA 181
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + LS V+ T S G+GFV+F+S++DA+ A+ S+ L G+ +R+N A
Sbjct: 182 FKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L L IE++ ++ + SSS + + +++G++ N+D++ L
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--------LFVGDLNVNVDDETLRNAF 182
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
++ + V++D TG SR + FV + +DA ++ + G ++ GR +++N K
Sbjct: 183 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 102 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSP 219
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 273
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 274 IVSVNGTTIEGHVVKC 289
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR---------------SRRFA 126
R +Y+GN+ R++ + ++ + G + ++I ++ R + +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 127 FVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYV 186
FV DA A + +NG +I G+E+KVN P Q + + SN + V+V
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFV 118
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
G+L+ +T+E +K F+ G++ A+V++ T KS G+GFV+F ++ DAE AI +
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ 178
Query: 247 LLEGQRIRVNKA 258
L G++IR N A
Sbjct: 179 WLGGRQIRTNWA 190
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK----SSGFG---------- 226
P +YVGNL++ VT ++ + FS+ G S K++ S+ S GF
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPY 67
Query: 227 -FVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
FV F DA AA++++N + G+ ++VN A
Sbjct: 68 CFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Query: 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141
R +Y+GN+ R++ + ++ + G + ++I + + + + FV DA A +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 142 KLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +I G+E+KVN P Q + + SN + V+VG+L+ +T+E +K
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQ------KKDTSNH----FHVFVGDLSPEITTEDIKSA 116
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F+ G++ A+V++ T KS G+GFV+F ++ DAE AI + L G++IR N A
Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 68 SSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAF 127
+ SS DT + F V++G++ I +++ G + A V+ D TG+S+ + F
Sbjct: 85 TPSSQKKDTSNHF--HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 142
Query: 128 VMMKTVEDANAVIEKLNGTEIGGREIKVNI-TEKPLV-----QVDLSLLQAEDSNFVDSP 181
V DA I + G +GGR+I+ N T KP + + L+ ED SP
Sbjct: 143 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 202
Query: 182 --YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239
VY G +A +T +++++ FS GQ++ +V G+ FV FS+ E A A
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHA 256
Query: 240 ISSLNNSLLEGQRIRV 255
I S+N + +EG ++
Sbjct: 257 IVSVNGTTIEGHVVKC 272
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG--FGFVTFSSEEDAEA 238
P +YVGNL++ VT ++ + FS+ G S K++ T +S + FV F DA A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYCFVEFYEHRDAAA 63
Query: 239 AISSLNNSLLEGQRIRVNKA 258
A++++N + G+ ++VN A
Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 14/180 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ + +D+L E+G + A V+ D G+S+ F FV + +DA +E L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275
Query: 144 NGTEIGGREIKVNITEKP-------LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
NG + +E V +K V+ + +L +A D F S +YV NL +++ E
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAAD-KFQSS--NLYVKNLDPSISDE 332
Query: 197 MLKKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
LK+ FS G V S+KV+R P GTSK S GFV F++ E+A A+S L+ ++E + + V
Sbjct: 333 KLKEIFSPFGTVTSSKVMRDPNGTSKGS--GFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 10/178 (5%)
Query: 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140
A ++I N+ +ID+ L G + +V D +G+S+ + FV E A I
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 141 EKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKK 200
EKLNG + +++ V P ++ A + F + VYV NLA++ T + LK
Sbjct: 182 EKLNGMLLNDKQVYVG----PFLRRQERDSTANKTKFTN----VYVKNLAESTTDDDLKN 233
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F E G++ SA V++ G KS GFGFV F + +DA A+ SLN + + V +A
Sbjct: 234 AFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 14/192 (7%)
Query: 66 TASSSSSSVDTPSEFAR-RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRR 124
T++ ++S T ++F +Y+G++ N+ + +L + G V V D T RS
Sbjct: 19 TSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLG 78
Query: 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKV 184
+ +V +DA I++LN + G+ I+V + + D S+ ++ N +
Sbjct: 79 YGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR-----DPSVRRSGAGN-------I 126
Query: 185 YVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
++ NL +++ + L FS G ++S KV V + +S G+GFV +++EE A+ AI LN
Sbjct: 127 FIKNLDESIDHKALHDTFSSFGNIVSCKVA-VDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 245 NSLLEGQRIRVN 256
LL +++ V
Sbjct: 186 GMLLNDKQVYVG 197
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +I +++L +I G V ++V+ D G S+ FV T E+A + +L
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQL 378
Query: 144 NGTEIGGREIKVNITEK 160
+G I + + V I ++
Sbjct: 379 SGKMIESKPLYVAIAQR 395
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L +I G +V+ D TGRSR F FV E+A + ++
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ GR I V +K + ++ ++ E N +YV NL + + L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D++ SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +++ E +N VY+ N + + + L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-------VYIKNFGEDMDDKRLREIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G LS KV+ + T +S GFGFV + + E+A+ A+S +N + G+ I V +A
Sbjct: 212 SAFGNTLSVKVM-MDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ML + FS G ++S +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFEVIKGRPIRI 84
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+D L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 189 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 241
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 242 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 214 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 273
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 274 EKAQSSQDAVSSMNLFDLGGQYLRVG 299
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 161 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 213
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 214 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 186 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 245
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 246 EKAQSSQDAVSSMNLFDLGGQYLRVG 271
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 190 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 242
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 243 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 215 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 274
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 275 EKAQSSQDAVSSMNLFDLGGQYLRVG 300
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 195 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 247
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 248 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 220 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 279
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 280 EKAQSSQDAVSSMNLFDLGGQYLRVG 305
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 90 PRNIDND---ELTKIVQEHGAVEKAEVIYDKYTGRSRRFA-----FVMMKTVEDANAVIE 141
P++ID+D E+T+ + GAV + +IY + G FV + + I+
Sbjct: 477 PKDIDDDLEGEVTEECGKFGAVNRV-IIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQ 535
Query: 142 KLNGTEIGGREIKVNITEK 160
LNG GGR++ + ++
Sbjct: 536 ALNGRWFGGRKVVAEVYDQ 554
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 143 LNGTEIGGREIKV----NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
+N +GGR IKV NI + Q + L E F ++YV ++ + ++ + +
Sbjct: 195 MNSVMLGGRNIKVGRPSNIGQ---AQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 247
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
K F G++ S + R P T K G+GF+ + + ++ A+SS+N L GQ +RV KA
Sbjct: 248 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 74 VDTPSEFAR---RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMM 130
+D +E AR R+Y+ ++ +++ +D++ + + G ++ + D TG+ + + F+
Sbjct: 220 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 279
Query: 131 KTVEDANAVIEKLNGTEIGGREIKVN 156
+ + + + +N ++GG+ ++V
Sbjct: 280 EKAQSSQDAVSSMNLFDLGGQYLRVG 305
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 90 PRNIDND---ELTKIVQEHGAVEKAEVIYDKYTGRSRRFA-----FVMMKTVEDANAVIE 141
P++ID+D E+T+ + GAV + +IY + G FV + + I+
Sbjct: 477 PKDIDDDLEGEVTEECGKFGAVNRV-IIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQ 535
Query: 142 KLNGTEIGGREIKVNITEK 160
LNG GGR++ + ++
Sbjct: 536 ALNGRWFGGRKVVAEVYDQ 554
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L ++ + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKELF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + ++GA +V+ D + G+SR F FV + EDA ++ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG ++ G+ I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K F+ G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFTPFGSITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A I+K+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK+ F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKEWF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ KS GFGFV+F EDA+ A+ +N L G+ I V +A
Sbjct: 212 GQYGAALSVKVM-TDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA 266
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G++ A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ + L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D++ L + + G +V+ D+ +G+S+ F FV + EDA ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 144 NGTEIGGREIKVNITEKPL-VQVDL-----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEM 197
NG E+ G++I V +K + Q +L + Q + + +YV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQG--VNLYVKNLDDGIDDER 309
Query: 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ++IDN L G + +V+ D+ S+ + FV +T E A IEK+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 144 NGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +L E +N VY+ N + + E LK F
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN-------VYIKNFGEDMDDERLKDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G LS KV+ + KS GFGFV+F EDA+ A+ +N L G++I V +A
Sbjct: 212 GKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
PS +Y+G++ ++ L + G + V D T RS +A+V + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196
++ +N I G+ +++ +++ D SL ++ N +++ NL K++ ++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR-----DPSLRKSGVGN-------IFIKNLDKSIDNK 113
Query: 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
L FS G +LS KV V + S G+GFV F ++E AE AI +N LL +++ V
Sbjct: 114 ALYDTFSAFGNILSCKV--VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 257 K 257
+
Sbjct: 172 R 172
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID++ L K G + A+V+ + GRS+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVATKPLYVALAQR 370
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 20/176 (11%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+P+ I +DEL K ++G + A V+ D+ +G SR F FV + E A +EK+
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 144 NGTEIG------GREIKVNITEKPLV----QVDLSLLQA-EDSNFVDSPYKVYVGNLAKT 192
NG +G GR K + E+ L Q +S + + SN +Y+ NL +
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN-------LYLKNLDDS 352
Query: 193 VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
V E LK+ FSE G V S KV+ + S GFGFV +S+ E+A A+ +N ++
Sbjct: 353 VNDEKLKEMFSEYGNVTSCKVM-MNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMI 407
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 41 SYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTK 100
S ++ +L A I D R+ + ++ S + V+I N+ +IDN L +
Sbjct: 113 SRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGN--------VFIKNLDASIDNKALYE 164
Query: 101 IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160
G + +V D GRS+ + FV + E A A I+KLNG + +++ V
Sbjct: 165 TFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG---- 219
Query: 161 PLVQVDLSLLQAED-----SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLR 215
++ +D S V S VYV NL K +T + LKK F + G + SA V++
Sbjct: 220 -------HFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 272
Query: 216 -VPGTSKSSGFGFVTFSSEEDAEAAISSLN 244
G S+S FGFV F S E A A+ +N
Sbjct: 273 DQSGNSRS--FGFVNFVSPEAAAVAVEKMN 300
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ +++ L + + V V D T RS +A+V EDA+ +E L
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 119
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N I R I++ ++ + + S + V++ NL ++ ++ L + FS
Sbjct: 120 NYAPIRDRPIRIMLSNR------------DPSTRLSGKGNVFIKNLDASIDNKALYETFS 167
Query: 204 EKGQVLSAKV-LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV + V G SK G+GFV F EE A+AAI LN LL +++ V
Sbjct: 168 SFGTILSCKVAMDVVGRSK--GYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ++++++L ++ E+G V +V+ + G SR F FV E+A ++++
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEM 402
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + V + ++
Sbjct: 403 NGKMIGRKPLYVALAQR 419
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + + G ++ ++ +D T + + FAFV + E A +E+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 143 LNGTEIGGREIKVNITEKP--LVQVDLSLLQ-AEDSNFVDSPYKVYVGNLAKTVTSEMLK 199
+N +GGR IKV +P + Q + Q AE++ + ++YV ++ ++ + +K
Sbjct: 147 MNSVMLGGRNIKVG---RPGSIGQAQPIIEQLAEEARAYN---RIYVASIHPDLSDDDIK 200
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G++ S + R P T K GFGF+ + + + A+SS+N L GQ +RV KA
Sbjct: 201 SVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/79 (17%), Positives = 41/79 (51%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
R+Y+ +I ++ +D++ + + G ++ + + TG+ + F F+ + + + +
Sbjct: 184 RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSS 243
Query: 143 LNGTEIGGREIKVNITEKP 161
+N ++GG+ ++V P
Sbjct: 244 MNLFDLGGQYLRVGKAVTP 262
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L +I G +V+ D +GRSR F FV E+A + ++
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ GR I V +K + ++ ++ E N +YV NL + + L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K F G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFLPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D++ SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +++ E +N VY+ N + + + L++ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-------VYIKNFGEDMDDKRLREIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G LS KV+ + + +S GFGFV + + E+A+ A+S +N + G+ I V +A
Sbjct: 212 SAFGNTLSVKVM-MDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+Y+G+L VT ML + FS G ++S +V R T +S + ++ F DAE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFEVIKGRPIRI 84
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+D L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI N ++D+ L +I G +V+ D +GRSR F FV E+A + ++
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 144 NGTEIGGREIKVNITEKPL-----VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEML 198
NG E+ GR + V +K + ++ ++ E N +YV NL + + L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQG-VNLYVKNLDDGIDDDRL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + S KV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPYGTITSTKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ +IDN L G + +V+ D+Y SR + FV +T E AN I+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + +++ E +N VY+ N + + + LK+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN-------VYIKNFGEDMDDKRLKEIF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S G LS KV+ + + +S GFGFV + + E+A+ A++ +N + G+ + V +A
Sbjct: 212 SAFGNTLSVKVM-MDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA 266
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+Y+G+L VT ML + FS G ++S +V R T +S G+ ++ F DAE A+ ++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 73 NFEVIKGRPIRI 84
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ ID+D L K +G + +V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG + + + V + ++
Sbjct: 354 NGRIVSTKPLYVALAQR 370
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY NI + +E K+ + +G + + D + G+S+ F FV + E A +++L
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDEL 292
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N EI G++I V +K +++ Q E++ S Y+ +++ NL T+ SE L+
Sbjct: 293 NDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLE 352
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ F G + SA+V+ V T KS GFGFV FSS E+A AI+ +N ++ G+ + V
Sbjct: 353 EEFKPFGSITSARVM-VDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%)
Query: 172 AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231
A+ + D+ +YVG L +V +L + FS GQV S +V R T KS G+ +V F
Sbjct: 41 ADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFH 100
Query: 232 SEEDAEAAISSLNNSLLEGQRIRV 255
ED E AI LN SL+EG+ R+
Sbjct: 101 KFEDGEKAIEDLNYSLIEGRPCRI 124
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ IDN L G + +V D G S+ F FV +T E A A IE +
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATDD-MGISKCFGFVHYETAEAAEAAIENV 199
Query: 144 NGTEIGGREIKVNITEKPLVQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + RE+ V K + + D S + +NF + VY N+ + E KK F
Sbjct: 200 NGMLLNDREVYVG---KHISKKDRESKFEEMKANFTN----VYAKNIDLDFSEEEFKKLF 252
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G++ S L KS GFGFV F + E A A+ LN+ + GQ+I V +A
Sbjct: 253 EAYGKITSI-YLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRA 307
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
+L + AS E++ EE A S+ S + S +Y+G + +++ L +I
Sbjct: 17 NLDSAPVASTEETEQTASGETEEAADSAQVSDTSAS-----LYVGELNPSVNEALLFEIF 71
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL 162
G V V D T +S +A+V ED IE LN + I GR ++ +++
Sbjct: 72 SPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQR-- 129
Query: 163 VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVP-GTSK 221
D SL + D N +++ NL + ++ L F+ G++LS KV G SK
Sbjct: 130 ---DPSLRRNGDGN-------IFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISK 179
Query: 222 SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
FGFV + + E AEAAI ++N LL + + V K
Sbjct: 180 C--FGFVHYETAEAAEAAIENVNGMLLNDREVYVGK 213
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ID+++L + + G++ A V+ D+ TG+S+ F FV + E+A I ++
Sbjct: 337 LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDE-TGKSKGFGFVCFSSPEEATKAITEM 395
Query: 144 NGTEIGGREIKVNITEK 160
N I G+ + V + ++
Sbjct: 396 NQRMIYGKPLYVALAQR 412
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 8/177 (4%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ N+ +DN + +I + G V + D+ G+SR F FV + E A ++++
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEM 299
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD--SPYK---VYVGNLAKTVTSEML 198
N EI G+++ V +K ++D L + +S ++ S Y+ ++V NL ++ SE L
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLD-ELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKL 358
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
++ F G + SA+V+ V KS GFGFV FSS E+A AI+ +N +++G+ + V
Sbjct: 359 EEEFKPFGTITSARVM-VDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 10/176 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ IDN L G + +V D+ G+S+ F FV +T E A A IE +
Sbjct: 148 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDE-LGQSKCFGFVHYETAEAAEAAIENV 206
Query: 144 NGTEIGGREIKVNITEKPLVQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + RE+ V K + + D S + +NF + VYV NLA V + ++ F
Sbjct: 207 NGMLLNDREVFVG---KHVSKRDRESKFEEMKANFTN----VYVKNLAPEVDNAKFEEIF 259
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
G V S L KS GFGFV F + E A A+ +N+ ++GQ++ V +A
Sbjct: 260 KPFGPVTSVH-LETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRA 314
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G + +++ L +I G V V D T +S +A+V D + IE+L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + + GR ++ +++ D SL + D N +++ NL + ++ L FS
Sbjct: 120 NYSLVDGRPCRIMWSQR-----DPSLRRNGDGN-------IFIKNLHPAIDNKALHDTFS 167
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257
G++LS KV +S FGFV + + E AEAAI ++N LL + + V K
Sbjct: 168 AFGRILSCKVA-TDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 220
Score = 38.1 bits (87), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+++ N+ +ID+++L + + G + A V+ D G+S+ F FV + E+A I ++
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDD-AGKSKGFGFVCFSSPEEATKAITEM 402
Query: 144 NGTEIGGREIKVNITEK 160
N I G+ + V + ++
Sbjct: 403 NQRMIQGKPLYVALAQR 419
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 5/177 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
RVY+G+I + D + G ++ + +D T + + FAFV + E A +E+
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 143 LNGTEIGGREIKVN-ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
+NG +GGR IKV + P Q + +Q E +F ++YV ++ ++ E +K
Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSF----NRIYVASIHPDLSEEDIKSV 246
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F G +L K+ + G+GF+ +++++ + AI+S+N L GQ +RV ++
Sbjct: 247 FEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 12/177 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D++ G S+ + FV +T E AN I+ +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHV 200
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + +++ V +I++K S + +NF + VY+ N+ + VT E +K
Sbjct: 201 NGMLLNDKKVFVGHHISKK----DRQSKFEEMKANFTN----VYIKNIDQEVTDEEFRKM 252
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + G++ SA + R KS GFGFV FS+ + A+AA+ +N+ ++GQ++ V +A
Sbjct: 253 FEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 51/222 (22%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI NI + + ++E K+ ++ G + A + D+ G+SR F FV T + A A ++++
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N EI G+++ V +K + + Q E + S Y+ +YV NL V E L+
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 200 KCFSEKGQVLSAKVLRVPGTS--------------------------------------- 220
+ FS G + SAKV+R T+
Sbjct: 354 ELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKK 413
Query: 221 -------KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
KS GFGFV FSS ++A A++ +N ++ G+ + V
Sbjct: 414 TEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 455
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 114 NYTLIKGKPCRI 125
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ NI ++L K+ +GA+ + D G+S+ F FV + E A +E+L
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDA-EGKSKGFGFVNYEGHEAAVKAVEEL 293
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N EI G++I V +K +++ Q E++ S Y+ +++ NL T+ SE L+
Sbjct: 294 NDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLE 353
Query: 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
+ F G + SA+V+ V T KS GFGFV FSS E+A AI+ +N + G+ + V
Sbjct: 354 EEFKPFGTITSARVM-VDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYV 408
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 43 SLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIV 102
++ L + IE R+ + ++ S + ++I N+ IDN L
Sbjct: 109 AIEELNYSPIEGRPCRIMWSQRDPSARRSGDGN--------IFIKNLHPAIDNKALHDTF 160
Query: 103 QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL 162
G + +V D G+S+ F FV +T E A A IE +NG + RE+ V K +
Sbjct: 161 STFGKILSCKVATDD-MGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG---KHI 216
Query: 163 VQVDL-SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK 221
+ D S + +NF + +YV N+ + E LKK F+ G + S L K
Sbjct: 217 SKKDRESKFEEIKANFTN----IYVKNIDLEYSEEDLKKLFTPYGAITSI-YLEKDAEGK 271
Query: 222 SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S GFGFV + E A A+ LN+ + GQ+I V +A
Sbjct: 272 SKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRA 308
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 63 AEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRS 122
EE A S++ + T S +Y+G + +++ L +I G V V D + +S
Sbjct: 38 GEEGADSANVAESTAS-----LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKS 92
Query: 123 RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPY 182
+A+V +ED IE+LN + I GR ++ +++ D S ++ D N
Sbjct: 93 LGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQR-----DPSARRSGDGN------ 141
Query: 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242
+++ NL + ++ L FS G++LS KV +S FGFV + + E AEAAI +
Sbjct: 142 -IFIKNLHPAIDNKALHDTFSTFGKILSCKVA-TDDMGQSKCFGFVHYETAEAAEAAIEN 199
Query: 243 LNNSLLEGQRIRVNK 257
+N LL + + V K
Sbjct: 200 VNGMLLNDREVFVGK 214
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ ID+++L + + G + A V+ D+ TG+S+ F FV + E+A I ++
Sbjct: 338 LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDE-TGKSKGFGFVCFSSPEEATKAITEM 396
Query: 144 NGTEIGGREIKVNITEK 160
N G+ + V + ++
Sbjct: 397 NQRMFFGKPLYVALAQR 413
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 20/182 (10%)
Query: 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDA 136
SEF VYI N ++D++ L + ++G +V+ D +G+S+ F FV + E A
Sbjct: 186 ASEFTN-VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAA 243
Query: 137 NAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDS----------PYKVYV 186
+E++NG +I G+ I V +K + + QAE + K+Y+
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVER------QAELKQMFEQLKRERIRGCQGVKLYI 297
Query: 187 GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246
NL T+ E L+ FS G + KV++ G SK GFG + FSS EDA A++ +N
Sbjct: 298 KNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSK--GFGLICFSSPEDATKAMTEMNGR 355
Query: 247 LL 248
+L
Sbjct: 356 IL 357
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ ++IDN L + G + ++V+ D S+ +AFV + A+ IE++
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG + G KV + + + L+++ S F + VY+ N + E LK FS
Sbjct: 158 NGKLLKG--CKVFVGRFKNRKDREAELRSKASEFTN----VYIKNFGGDMDDERLKDVFS 211
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G+ LS KV+ + KS GFGFV+F S E A+ A+ +N + GQ I V +A
Sbjct: 212 KYGKTLSVKVM-TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG+L VT ++L + FS G VLS ++ R T +S G+ +V F DA+ A+ ++
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 244 NNSLLEGQRIRV 255
N +++G+ IR+
Sbjct: 72 NFDIIKGKSIRL 83
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142
++YI N+ ID+++L G++ + +V+ ++ G+S+ F + + EDA + +
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 351
Query: 143 LNGTEIGGREIKVNITEK 160
+NG +G + + + + ++
Sbjct: 352 MNGRILGSKPLSIALAQR 369
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 12/177 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D++ G S+ + FV +T E AN I+ +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHV 200
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + +++ V +I++K S + +NF + VY+ N+ + VT E +K
Sbjct: 201 NGMLLNDKKVFVGHHISKK----DRQSKFEEMKANFTN----VYIKNIDQEVTDEEFRKM 252
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + G++ SA + R KS GFGFV FS+ + A+AA+ +N+ ++GQ++ V +A
Sbjct: 253 FEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 49/220 (22%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VYI NI + + ++E K+ ++ G + A + D+ G+SR F FV T + A A ++++
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N EI G+++ V +K + + Q E + S Y+ +YV NL V E L+
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 353
Query: 200 KCFSEKGQVLSAKVLRVPGTS--------------------------------------- 220
+ FS G + SAKV+R T+
Sbjct: 354 ELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTE 413
Query: 221 -----KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
KS GFGFV FSS ++A A++ +N ++ G+ + V
Sbjct: 414 KKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 453
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 114 NYTLIKGKPCRI 125
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 11/177 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D++ G S+ + FV +T E A I+ +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHV 203
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + +++ V +I +K S + +NF + VYV N+ + T E +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDR----QSKFEEMKANFTN----VYVKNIDQDTTEEEFRDL 255
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + G++ SA + R + KS GFGFV F+S ++A AA+ +LN+ +GQ++ V +A
Sbjct: 256 FEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRA 312
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
VY+ NI ++ +E + ++ G + A + D +G+SR F FV + ++A A +E L
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
N + G+++ V +K + + Q E + S Y+ +Y+ NL+ + E L+
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLR 357
Query: 200 KCFSEKGQVLSAKVLR 215
+ FS G + SAKV+R
Sbjct: 358 ELFSSYGTITSAKVMR 373
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 117 NYTLIKGRPCRI 128
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 220 SKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
KS GFGFV FSS ++A A++ +N ++ G+ + V
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYV 465
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 14/162 (8%)
Query: 89 IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI 148
+P+++ + EL + + G + ++ D TG S + FV + DA I LNG +
Sbjct: 85 LPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITV 144
Query: 149 GGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQV 208
+ IKV+ +P + Q D+N +YV NL++++T E L+ F + GQ+
Sbjct: 145 RNKRIKVSFA-RPGGE------QLRDTN-------LYVTNLSRSITDEQLETIFGKYGQI 190
Query: 209 LSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250
+ +LR T G F+ F+ E+A+ AIS+LNN + EG
Sbjct: 191 VQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEG 232
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L + + L F G + + +++R T S G+GFV F SE DA AI++LN +
Sbjct: 85 LPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITV 144
Query: 249 EGQRIRV 255
+RI+V
Sbjct: 145 RNKRIKV 151
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ + L +I + G V V D T RS +A+V DA ++ L
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N T I G+ ++ +++ D SL ++ N V++ NL K + + L FS
Sbjct: 72 NNTPIRGKACRIMWSQR-----DPSLRKSGVGN-------VFIKNLDKGIDHKALYDTFS 119
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
G +LS KV+ G S S GFGFV + ++E A+ AI+ +N ++ GQ++ V
Sbjct: 120 AFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFV 170
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 92/168 (54%), Gaps = 10/168 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+ N+ ++ D+L +++Q++G + ++ D G+S+ F F ++ E A V+E
Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESAEAAKNVVENE 248
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK---VYVGNLAKTVTSEMLKK 200
NG G+ I +K + + +AE + ++ Y+ +Y+ N+ ++ ++ L++
Sbjct: 249 NGKIFHGKPIYAGRAQKKIER------EAELKHTFETKYQGVNLYIKNIDDSIDNDKLRE 302
Query: 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
FS+ G + SA V++ + S GFGFV +++ ++A A++ +N ++
Sbjct: 303 VFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMI 350
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ + ID+ L G + +V+ D S+ F FV +T E A+ I K+
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDD-GNSSKGFGFVHYETQESADKAIAKV 158
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
NG I G+++ V P + Q + F + V+ NL++ V + LK+
Sbjct: 159 NGMMINGQKVFVG----PF-KSSKERGQPTEVKFTN----VFFKNLSEDVGPDQLKELLQ 209
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
+ G++ + ++ KS GFGF F S E A+ + + N + G+ I +A
Sbjct: 210 QYGEITNITIM-ADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRA 263
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234
+NF +YVG+L V+ + L + F++ G V + +V R T +S + +V + +
Sbjct: 3 TNFTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGA 62
Query: 235 DAEAAISSLNNSLLEGQRIRV 255
DAE A+ +LNN+ + G+ R+
Sbjct: 63 DAERALDTLNNTPIRGKACRI 83
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI NI +IDND+L ++ + G + A V+ D S+ F FV ++A + ++
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEM 345
Query: 144 NGTEIGGREIKVNITEK 160
NG IG + + V + ++
Sbjct: 346 NGRMIGTKPLYVALAQR 362
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 14/162 (8%)
Query: 89 IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI 148
+P+++ + EL + + G + ++ D TG S +AFV + DA I+ LNG +
Sbjct: 92 LPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTV 151
Query: 149 GGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQV 208
+ +KV+ + +D+N +YV NL +T+T + L+K F + G +
Sbjct: 152 RNKRLKVSYARPGGESI-------KDTN-------LYVTNLPRTITDDELEKIFGKYGNI 197
Query: 209 LSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250
+ +LR T K G FV F+ E+A+ AIS+LNN + EG
Sbjct: 198 VQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEG 239
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+PR I +DEL KI ++G + + ++ DK TG+ R AFV E+A I L
Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 232
Query: 144 N 144
N
Sbjct: 233 N 233
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 189 LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
L + +T L F G + + ++++ T S G+ FV F+SE DA+ AI SLN +
Sbjct: 92 LPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTV 151
Query: 249 EGQRIRVNKA 258
+R++V+ A
Sbjct: 152 RNKRLKVSYA 161
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 12/177 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
V+I N+ IDN L G + +V D++ G S+ + FV +T E AN I+ +
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHV 199
Query: 144 NGTEIGGREIKV--NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKC 201
NG + +++ V +I++K Q ++A NF + +Y+ N+ VT E +K
Sbjct: 200 NGMLLNDKKVFVGHHISKKDR-QSKFDEMKA---NFTN----IYIKNIDPDVTEEEFRKI 251
Query: 202 FSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
F + G++ SA + R P KS GFGFV +S+ E A+AA+ +++ ++ Q++ V +A
Sbjct: 252 FEQFGEITSATLSRDP-EGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRA 307
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 57/228 (25%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+YI NI ++ +E KI ++ G + A + D G+SR F FV T E A A ++++
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDP-EGKSRGFGFVNYSTHESAQAAVDEM 292
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVD-SPYK---VYVGNLAKTVTSEMLK 199
+ E+ +++ V +K + + Q E + S Y+ +YV NL V E L+
Sbjct: 293 HDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLR 352
Query: 200 KCFSEKGQVLSAKVLR---------VPGTSK----------------------------- 221
+ F G + SAKV+R P + K
Sbjct: 353 ELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDEEK 412
Query: 222 --------------SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255
S GFGFV FSS ++A A++ +N ++ G+ + V
Sbjct: 413 KDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 460
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243
+YVG L +VT ML + FS GQV S +V R T +S G+ +V +++ D E A+ L
Sbjct: 53 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 112
Query: 244 NNSLLEGQRIRV 255
N +L++G+ R+
Sbjct: 113 NYTLIKGKPCRI 124
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+P ++D L + + G + +V+ D +G SR F FV + E+A + +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYK-----VYVGNLAKTVTSEML 198
NG E+ GR + +K V+ L + + D + +YV NL ++ + L
Sbjct: 252 NGKEVSGRLLYAGRAQK-RVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248
+K FS G + SAKV+ G SK GFGFV FSS E+A A++ +N ++
Sbjct: 311 RKEFSPYGVITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
++I N+ +IDN L G + +V D++ SR F FV +T E A I +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 144 NGTEIGGREIKV-NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCF 202
NG + R++ V + + + +L E +N +YV NL V + L+ F
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTN-------IYVKNLPVDVDEQGLQDLF 211
Query: 203 SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258
S+ G++LS KV+R + S FGFV F E+A+ A+ +N + G+ + +A
Sbjct: 212 SQFGKMLSVKVMR-DNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA 266
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+G++ ++ L + G + V D T RS +A++ + DA ++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 144 NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203
N + G+ I++ +++ D L ++ N +++ NL ++ ++ L FS
Sbjct: 73 NFEMLKGQPIRIMWSQR-----DPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFS 120
Query: 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256
G +LS KV S GFGFV F + E A+ AI+++N LL +++ V
Sbjct: 121 TFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG 171
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143
+Y+ N+ +ID+D+L K +G + A+V+ + G S+ F FV + E+A + ++
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 144 NGTEIGGREIKVNITEK 160
NG +G + + V + ++
Sbjct: 354 NGRIVGTKPLYVALAQR 370
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,217,457
Number of Sequences: 539616
Number of extensions: 2900282
Number of successful extensions: 12327
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 329
Number of HSP's that attempted gapping in prelim test: 9412
Number of HSP's gapped (non-prelim): 2384
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)