Query 025070
Match_columns 258
No_of_seqs 184 out of 2012
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.5E-38 5.5E-43 268.9 21.4 245 14-258 12-346 (352)
2 TIGR01659 sex-lethal sex-letha 100.0 4.8E-36 1E-40 250.1 22.1 169 76-258 102-272 (346)
3 KOG0148 Apoptosis-promoting RN 100.0 5.6E-36 1.2E-40 230.1 16.3 210 22-257 23-234 (321)
4 TIGR01645 half-pint poly-U bin 100.0 1.3E-34 2.7E-39 253.6 21.3 178 78-258 104-281 (612)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.6E-34 3.5E-39 259.1 20.5 235 22-258 105-361 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 7.1E-34 1.5E-38 255.0 20.1 235 13-258 8-258 (562)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.4E-33 7.5E-38 237.4 21.8 165 80-258 2-168 (352)
8 KOG0145 RNA-binding protein EL 100.0 1.3E-33 2.9E-38 216.1 15.9 236 22-257 58-354 (360)
9 TIGR01622 SF-CC1 splicing fact 100.0 2E-32 4.3E-37 240.3 23.1 179 77-258 85-263 (457)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 4.4E-32 9.6E-37 237.3 19.2 217 22-258 75-304 (578)
11 TIGR01622 SF-CC1 splicing fact 100.0 4.3E-31 9.3E-36 231.9 21.9 233 22-258 106-445 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.3E-31 1.4E-35 233.8 22.7 230 29-258 211-499 (509)
13 KOG0144 RNA-binding protein CU 100.0 2.2E-32 4.8E-37 222.6 12.0 243 14-257 43-500 (510)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.6E-30 5.6E-35 227.0 23.6 232 18-258 15-348 (481)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.2E-30 4.7E-35 227.5 22.0 173 79-258 273-477 (481)
16 KOG0117 Heterogeneous nuclear 100.0 4.3E-31 9.3E-36 216.0 14.9 226 14-258 92-328 (506)
17 KOG0144 RNA-binding protein CU 100.0 3.9E-31 8.5E-36 215.4 14.0 171 74-258 27-203 (510)
18 KOG0131 Splicing factor 3b, su 100.0 2E-30 4.2E-35 188.7 12.0 169 77-258 5-174 (203)
19 KOG0145 RNA-binding protein EL 100.0 1.1E-29 2.5E-34 194.5 15.8 168 77-258 37-206 (360)
20 KOG0127 Nucleolar protein fibr 100.0 2.5E-29 5.5E-34 210.2 19.0 235 23-258 23-375 (678)
21 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.8E-28 4E-33 218.0 21.7 177 75-258 169-372 (509)
22 TIGR01645 half-pint poly-U bin 100.0 2.3E-28 4.9E-33 214.4 21.2 146 15-160 117-283 (612)
23 TIGR01648 hnRNP-R-Q heterogene 100.0 2.5E-28 5.5E-33 213.8 20.2 160 78-258 55-219 (578)
24 KOG0127 Nucleolar protein fibr 100.0 3.8E-28 8.2E-33 203.2 16.2 176 82-258 6-193 (678)
25 KOG0117 Heterogeneous nuclear 100.0 1.9E-27 4.2E-32 194.7 19.4 163 76-258 78-245 (506)
26 KOG0123 Polyadenylate-binding 100.0 2.9E-27 6.4E-32 198.5 16.1 219 15-258 8-243 (369)
27 KOG0146 RNA-binding protein ET 100.0 1.3E-27 2.8E-32 184.0 12.7 178 79-257 17-361 (371)
28 KOG0109 RNA-binding protein LA 99.9 1.8E-26 4E-31 179.5 10.9 144 82-257 3-146 (346)
29 KOG0110 RNA-binding protein (R 99.9 5.9E-26 1.3E-30 195.6 13.4 170 83-258 517-690 (725)
30 KOG0123 Polyadenylate-binding 99.9 8.2E-26 1.8E-30 189.8 13.9 243 13-258 80-346 (369)
31 KOG0147 Transcriptional coacti 99.9 9.3E-26 2E-30 189.5 13.3 230 23-257 197-524 (549)
32 KOG0124 Polypyrimidine tract-b 99.9 6.9E-26 1.5E-30 181.5 11.5 175 80-258 112-287 (544)
33 KOG0147 Transcriptional coacti 99.9 6.6E-24 1.4E-28 178.5 8.2 182 75-257 173-354 (549)
34 KOG0124 Polypyrimidine tract-b 99.9 5.5E-22 1.2E-26 159.2 16.5 237 20-256 128-530 (544)
35 KOG4205 RNA-binding protein mu 99.9 6.5E-23 1.4E-27 166.6 10.6 169 80-258 5-173 (311)
36 KOG0148 Apoptosis-promoting RN 99.9 8.9E-23 1.9E-27 157.6 10.4 136 79-258 4-139 (321)
37 KOG4206 Spliceosomal protein s 99.9 8.1E-20 1.7E-24 138.6 16.6 172 79-258 7-219 (221)
38 TIGR01659 sex-lethal sex-letha 99.8 5.5E-21 1.2E-25 159.9 10.9 150 14-163 116-277 (346)
39 KOG0105 Alternative splicing f 99.8 5.9E-20 1.3E-24 134.5 14.7 160 79-248 4-175 (241)
40 KOG4212 RNA-binding protein hn 99.8 1.2E-18 2.7E-23 143.0 18.5 179 75-255 38-288 (608)
41 KOG1548 Transcription elongati 99.8 5.9E-19 1.3E-23 140.9 15.8 174 78-256 131-347 (382)
42 KOG4211 Splicing factor hnRNP- 99.8 1.1E-18 2.4E-23 145.5 16.6 169 78-255 7-176 (510)
43 PLN03134 glycine-rich RNA-bind 99.8 4.3E-19 9.4E-24 130.6 12.6 85 78-162 31-115 (144)
44 PLN03134 glycine-rich RNA-bind 99.8 2.8E-18 6E-23 126.3 11.5 80 179-258 32-111 (144)
45 KOG0120 Splicing factor U2AF, 99.8 8.4E-18 1.8E-22 143.5 14.5 181 77-257 285-488 (500)
46 KOG1457 RNA binding protein (c 99.8 2.6E-17 5.6E-22 124.2 14.7 169 76-248 29-273 (284)
47 KOG0110 RNA-binding protein (R 99.7 2E-17 4.3E-22 143.4 13.3 176 77-258 381-595 (725)
48 PF00076 RRM_1: RNA recognitio 99.7 1.7E-17 3.7E-22 107.5 9.2 70 84-154 1-70 (70)
49 KOG0106 Alternative splicing f 99.7 1.2E-17 2.6E-22 128.0 8.1 160 82-257 2-167 (216)
50 KOG0131 Splicing factor 3b, su 99.7 3.6E-18 7.7E-23 124.9 4.3 154 9-162 13-178 (203)
51 KOG1190 Polypyrimidine tract-b 99.7 4E-16 8.7E-21 127.4 15.8 169 81-258 297-488 (492)
52 KOG0122 Translation initiation 99.7 5E-17 1.1E-21 124.3 9.5 83 79-161 187-269 (270)
53 COG0724 RNA-binding proteins ( 99.7 1.1E-15 2.5E-20 125.4 14.0 161 81-241 115-285 (306)
54 PF00076 RRM_1: RNA recognitio 99.7 3.5E-16 7.6E-21 101.3 8.7 70 184-254 1-70 (70)
55 PF14259 RRM_6: RNA recognitio 99.7 4.1E-16 9E-21 101.0 8.6 70 84-154 1-70 (70)
56 KOG0122 Translation initiation 99.7 4.3E-16 9.4E-21 119.2 9.3 80 179-258 187-266 (270)
57 KOG0121 Nuclear cap-binding pr 99.7 4.5E-16 9.8E-21 107.4 7.3 84 78-161 33-116 (153)
58 KOG0109 RNA-binding protein LA 99.6 2.9E-16 6.2E-21 123.0 5.6 133 22-163 19-152 (346)
59 PLN03120 nucleic acid binding 99.6 2.3E-15 5E-20 118.5 10.6 78 81-162 4-81 (260)
60 KOG0125 Ataxin 2-binding prote 99.6 1.9E-15 4.1E-20 120.3 9.5 84 76-161 91-174 (376)
61 PF14259 RRM_6: RNA recognitio 99.6 3.3E-15 7.1E-20 96.8 8.8 70 184-254 1-70 (70)
62 KOG0149 Predicted RNA-binding 99.6 1.4E-15 3.1E-20 115.9 7.7 82 78-160 9-90 (247)
63 KOG4207 Predicted splicing fac 99.6 1.7E-15 3.7E-20 113.2 6.9 84 76-159 8-91 (256)
64 KOG0149 Predicted RNA-binding 99.6 2.1E-15 4.5E-20 115.0 7.5 76 182-258 13-88 (247)
65 KOG0114 Predicted RNA-binding 99.6 1.2E-14 2.5E-19 96.7 9.6 87 74-163 11-97 (124)
66 KOG0125 Ataxin 2-binding prote 99.6 3.9E-15 8.4E-20 118.5 8.6 82 175-258 90-171 (376)
67 KOG4212 RNA-binding protein hn 99.6 8.2E-14 1.8E-18 115.0 16.0 79 78-157 212-290 (608)
68 PLN03120 nucleic acid binding 99.6 1.3E-14 2.8E-19 114.3 10.9 74 181-258 4-77 (260)
69 KOG1365 RNA-binding protein Fu 99.6 6E-15 1.3E-19 119.7 9.0 174 79-255 159-356 (508)
70 KOG0107 Alternative splicing f 99.6 5E-15 1.1E-19 107.9 7.6 80 79-163 8-87 (195)
71 KOG4207 Predicted splicing fac 99.6 5.2E-15 1.1E-19 110.6 6.7 78 181-258 13-90 (256)
72 KOG0126 Predicted RNA-binding 99.6 3.9E-16 8.4E-21 114.2 0.5 85 78-162 32-116 (219)
73 KOG0113 U1 small nuclear ribon 99.6 2.7E-14 5.8E-19 112.4 10.6 83 79-161 99-181 (335)
74 KOG0130 RNA-binding protein RB 99.6 1E-14 2.2E-19 101.7 7.3 86 76-161 67-152 (170)
75 smart00362 RRM_2 RNA recogniti 99.6 3.4E-14 7.3E-19 91.9 9.5 71 83-155 1-71 (72)
76 KOG4211 Splicing factor hnRNP- 99.6 1.1E-13 2.4E-18 115.9 14.3 221 25-251 30-348 (510)
77 PLN03121 nucleic acid binding 99.6 3.7E-14 8.1E-19 110.0 10.6 79 80-162 4-82 (243)
78 PLN03213 repressor of silencin 99.5 2.6E-14 5.6E-19 119.6 9.8 81 79-163 8-90 (759)
79 KOG0121 Nuclear cap-binding pr 99.5 1.7E-14 3.7E-19 99.7 7.2 79 179-257 34-112 (153)
80 KOG0129 Predicted RNA-binding 99.5 3.5E-13 7.7E-18 113.6 16.1 163 76-242 254-432 (520)
81 smart00360 RRM RNA recognition 99.5 6.8E-14 1.5E-18 90.1 8.7 70 86-155 1-70 (71)
82 smart00362 RRM_2 RNA recogniti 99.5 1.2E-13 2.6E-18 89.2 9.6 72 183-256 1-72 (72)
83 KOG0107 Alternative splicing f 99.5 4.9E-14 1.1E-18 102.8 7.7 72 181-257 10-81 (195)
84 smart00360 RRM RNA recognition 99.5 1.4E-13 3E-18 88.7 8.7 71 186-256 1-71 (71)
85 cd00590 RRM RRM (RNA recogniti 99.5 3.7E-13 8.1E-18 87.4 10.2 74 83-157 1-74 (74)
86 KOG0111 Cyclophilin-type pepti 99.5 2.2E-14 4.8E-19 108.2 4.5 87 77-163 6-92 (298)
87 KOG0130 RNA-binding protein RB 99.5 8E-14 1.7E-18 97.2 6.5 81 178-258 69-149 (170)
88 KOG0120 Splicing factor U2AF, 99.5 1.3E-13 2.8E-18 118.1 9.0 177 75-258 169-366 (500)
89 KOG0108 mRNA cleavage and poly 99.5 1.6E-13 3.4E-18 116.9 8.9 82 82-163 19-100 (435)
90 KOG1456 Heterogeneous nuclear 99.5 4.9E-12 1.1E-16 102.7 16.9 168 77-251 283-475 (494)
91 PLN03213 repressor of silencin 99.5 2.8E-13 6E-18 113.6 9.9 75 180-258 9-85 (759)
92 PF13893 RRM_5: RNA recognitio 99.5 3.2E-13 7E-18 83.2 7.8 56 198-258 1-56 (56)
93 KOG1456 Heterogeneous nuclear 99.5 1.3E-12 2.7E-17 106.0 13.1 164 77-258 27-196 (494)
94 KOG0114 Predicted RNA-binding 99.5 5.2E-13 1.1E-17 88.9 8.9 74 181-257 18-91 (124)
95 KOG0126 Predicted RNA-binding 99.5 7.7E-15 1.7E-19 107.5 0.1 78 180-257 34-111 (219)
96 PLN03121 nucleic acid binding 99.5 5.8E-13 1.3E-17 103.4 10.5 74 180-257 4-77 (243)
97 KOG0113 U1 small nuclear ribon 99.5 3.4E-13 7.3E-18 106.3 9.1 79 179-257 99-177 (335)
98 cd00590 RRM RRM (RNA recogniti 99.5 1.1E-12 2.3E-17 85.2 10.2 74 183-257 1-74 (74)
99 KOG0108 mRNA cleavage and poly 99.4 3.5E-13 7.6E-18 114.8 8.6 77 182-258 19-95 (435)
100 smart00361 RRM_1 RNA recogniti 99.4 9.2E-13 2E-17 85.0 8.2 62 195-256 2-70 (70)
101 PF13893 RRM_5: RNA recognitio 99.4 1.4E-12 3.1E-17 80.3 7.7 56 98-158 1-56 (56)
102 smart00361 RRM_1 RNA recogniti 99.4 1.8E-12 3.8E-17 83.7 8.3 61 95-155 2-69 (70)
103 KOG1190 Polypyrimidine tract-b 99.4 1.2E-11 2.7E-16 101.5 14.9 166 83-257 152-369 (492)
104 KOG0105 Alternative splicing f 99.4 8.7E-13 1.9E-17 97.1 6.7 76 180-258 5-80 (241)
105 KOG0111 Cyclophilin-type pepti 99.4 3.8E-13 8.2E-18 101.6 4.3 79 180-258 9-87 (298)
106 COG0724 RNA-binding proteins ( 99.4 3.8E-12 8.2E-17 104.3 10.0 78 181-258 115-192 (306)
107 KOG4307 RNA binding protein RB 99.3 3.2E-11 7E-16 105.0 13.1 76 182-257 868-943 (944)
108 KOG4205 RNA-binding protein mu 99.3 1E-11 2.3E-16 101.5 8.7 143 22-165 23-180 (311)
109 KOG4454 RNA binding protein (R 99.3 7E-13 1.5E-17 100.1 1.2 144 77-246 5-148 (267)
110 KOG0226 RNA-binding proteins [ 99.3 4.5E-12 9.7E-17 97.9 5.4 165 83-256 98-265 (290)
111 KOG0146 RNA-binding protein ET 99.3 4.3E-12 9.3E-17 98.7 5.2 87 76-162 280-366 (371)
112 KOG0415 Predicted peptidyl pro 99.3 1.2E-11 2.6E-16 99.8 6.9 83 175-257 233-315 (479)
113 KOG4208 Nucleolar RNA-binding 99.3 3.2E-11 6.9E-16 90.6 8.2 86 76-161 44-130 (214)
114 KOG0128 RNA-binding protein SA 99.2 6.8E-13 1.5E-17 117.7 -2.4 144 80-255 666-809 (881)
115 KOG0415 Predicted peptidyl pro 99.2 2.9E-11 6.3E-16 97.6 7.0 87 75-161 233-319 (479)
116 KOG4206 Spliceosomal protein s 99.2 6.1E-11 1.3E-15 90.5 8.4 74 182-258 10-87 (221)
117 KOG0132 RNA polymerase II C-te 99.2 9.7E-11 2.1E-15 103.3 8.1 111 79-204 419-529 (894)
118 KOG0112 Large RNA-binding prot 99.2 3.2E-11 7E-16 107.8 5.1 161 75-258 366-528 (975)
119 KOG0132 RNA polymerase II C-te 99.2 9.1E-11 2E-15 103.5 7.6 73 180-258 420-492 (894)
120 KOG4210 Nuclear localization s 99.1 7.1E-11 1.5E-15 96.3 6.4 174 79-257 86-260 (285)
121 KOG0153 Predicted RNA-binding 99.1 2.2E-10 4.8E-15 92.4 8.3 81 74-160 221-302 (377)
122 PF04059 RRM_2: RNA recognitio 99.1 8.9E-10 1.9E-14 74.5 9.7 81 82-162 2-88 (97)
123 KOG4208 Nucleolar RNA-binding 99.1 5.6E-10 1.2E-14 84.0 8.4 79 179-257 47-126 (214)
124 KOG1365 RNA-binding protein Fu 99.1 3.1E-09 6.7E-14 86.9 13.2 163 78-242 57-225 (508)
125 KOG2193 IGF-II mRNA-binding pr 99.1 2.1E-11 4.6E-16 100.5 -0.1 151 82-257 2-153 (584)
126 KOG4660 Protein Mei2, essentia 99.1 3.1E-10 6.6E-15 96.9 6.6 170 73-255 67-244 (549)
127 KOG0153 Predicted RNA-binding 99.0 1.2E-09 2.6E-14 88.2 8.2 75 178-258 225-300 (377)
128 PF04059 RRM_2: RNA recognitio 99.0 4.7E-09 1E-13 71.1 9.6 77 182-258 2-84 (97)
129 KOG0533 RRM motif-containing p 99.0 2.4E-09 5.2E-14 84.4 9.1 87 77-164 79-165 (243)
130 KOG4661 Hsp27-ERE-TATA-binding 99.0 2.8E-09 6.1E-14 91.3 8.3 81 178-258 402-482 (940)
131 KOG4661 Hsp27-ERE-TATA-binding 98.9 4.2E-09 9.1E-14 90.3 8.9 84 78-161 402-485 (940)
132 KOG0116 RasGAP SH3 binding pro 98.9 9.5E-09 2.1E-13 87.5 8.7 81 80-161 287-367 (419)
133 KOG0533 RRM motif-containing p 98.9 1.2E-08 2.7E-13 80.4 8.4 78 179-257 81-158 (243)
134 KOG0151 Predicted splicing reg 98.8 1.1E-08 2.4E-13 89.7 7.8 84 77-160 170-256 (877)
135 KOG4209 Splicing factor RNPS1, 98.8 9.5E-09 2.1E-13 81.2 5.8 85 76-161 96-180 (231)
136 KOG0226 RNA-binding proteins [ 98.8 1.4E-08 3E-13 78.8 5.5 81 78-158 187-267 (290)
137 KOG4307 RNA binding protein RB 98.7 3.4E-08 7.3E-13 86.6 8.1 175 79-256 309-509 (944)
138 KOG1457 RNA binding protein (c 98.7 1.1E-07 2.4E-12 72.5 9.0 81 178-258 31-115 (284)
139 KOG4676 Splicing factor, argin 98.7 1.7E-08 3.6E-13 82.9 4.8 162 82-249 8-214 (479)
140 KOG1548 Transcription elongati 98.6 1.7E-07 3.6E-12 76.0 8.2 77 181-258 134-218 (382)
141 KOG4660 Protein Mei2, essentia 98.6 3.2E-08 6.9E-13 84.9 4.2 72 178-254 72-143 (549)
142 KOG4209 Splicing factor RNPS1, 98.6 7.3E-08 1.6E-12 76.3 5.9 78 179-257 99-176 (231)
143 KOG0151 Predicted splicing reg 98.6 1.2E-07 2.6E-12 83.4 7.0 81 178-258 171-254 (877)
144 KOG0116 RasGAP SH3 binding pro 98.6 1.6E-07 3.4E-12 80.1 7.5 74 182-256 289-362 (419)
145 KOG0106 Alternative splicing f 98.6 5.9E-08 1.3E-12 75.0 4.0 68 183-258 3-70 (216)
146 KOG4454 RNA binding protein (R 98.5 9.1E-08 2E-12 72.8 2.7 76 180-257 8-83 (267)
147 PF11608 Limkain-b1: Limkain b 98.3 3.8E-06 8.3E-11 54.3 7.3 70 82-161 3-77 (90)
148 PF08777 RRM_3: RNA binding mo 98.3 2.3E-06 5E-11 59.3 6.6 69 182-256 2-75 (105)
149 KOG0128 RNA-binding protein SA 98.3 2.5E-08 5.5E-13 89.3 -4.8 166 80-250 570-736 (881)
150 PF11608 Limkain-b1: Limkain b 98.3 9.1E-06 2E-10 52.6 7.9 67 182-258 3-74 (90)
151 COG5175 MOT2 Transcriptional r 98.2 1.1E-05 2.4E-10 65.5 9.6 76 182-257 115-199 (480)
152 KOG4210 Nuclear localization s 98.2 1.3E-06 2.8E-11 71.6 3.7 84 79-163 182-266 (285)
153 KOG1995 Conserved Zn-finger pr 98.1 4.9E-06 1.1E-10 68.2 4.6 81 178-258 63-151 (351)
154 KOG3152 TBP-binding protein, a 98.0 3.5E-06 7.6E-11 65.8 3.2 74 80-153 73-158 (278)
155 KOG1996 mRNA splicing factor [ 98.0 2.4E-05 5.2E-10 62.4 7.0 63 195-257 300-363 (378)
156 KOG1995 Conserved Zn-finger pr 98.0 1.6E-05 3.4E-10 65.2 5.8 84 78-161 63-154 (351)
157 KOG0112 Large RNA-binding prot 98.0 1.3E-05 2.8E-10 72.8 5.8 145 13-163 380-533 (975)
158 PF08777 RRM_3: RNA binding mo 98.0 1.9E-05 4.1E-10 54.8 5.3 69 82-156 2-75 (105)
159 PF14605 Nup35_RRM_2: Nup53/35 98.0 2.5E-05 5.4E-10 47.0 5.1 52 82-140 2-53 (53)
160 KOG2314 Translation initiation 97.8 5.9E-05 1.3E-09 65.3 7.4 81 77-158 54-141 (698)
161 COG5175 MOT2 Transcriptional r 97.8 6.5E-05 1.4E-09 61.1 6.9 84 78-161 111-203 (480)
162 KOG0129 Predicted RNA-binding 97.8 0.00013 2.8E-09 62.8 8.9 69 74-142 363-432 (520)
163 PF14605 Nup35_RRM_2: Nup53/35 97.8 8.4E-05 1.8E-09 44.6 5.4 52 182-240 2-53 (53)
164 KOG0115 RNA-binding protein p5 97.8 9.5E-05 2.1E-09 58.0 6.9 90 134-245 5-94 (275)
165 KOG2314 Translation initiation 97.8 0.00011 2.4E-09 63.7 7.7 74 182-256 59-139 (698)
166 KOG3152 TBP-binding protein, a 97.7 2.2E-05 4.8E-10 61.5 2.8 73 180-252 73-157 (278)
167 KOG4849 mRNA cleavage factor I 97.7 3.6E-05 7.7E-10 62.9 3.9 78 80-157 79-158 (498)
168 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00019 4.2E-09 49.0 6.8 74 182-257 7-88 (100)
169 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00055 1.2E-08 46.8 7.2 77 80-158 5-89 (100)
170 KOG2416 Acinus (induces apopto 97.5 8E-05 1.7E-09 64.9 3.6 76 177-258 440-519 (718)
171 PF08675 RNA_bind: RNA binding 97.5 0.00071 1.5E-08 43.9 6.6 56 80-144 8-63 (87)
172 KOG2202 U2 snRNP splicing fact 97.4 7.4E-05 1.6E-09 58.7 2.3 62 97-159 84-146 (260)
173 KOG1855 Predicted RNA-binding 97.4 0.00014 3E-09 61.1 3.7 67 179-245 229-308 (484)
174 PF08952 DUF1866: Domain of un 97.4 0.00091 2E-08 48.6 6.9 59 96-163 51-109 (146)
175 PF08952 DUF1866: Domain of un 97.3 0.0011 2.4E-08 48.1 6.8 53 196-257 51-103 (146)
176 KOG2202 U2 snRNP splicing fact 97.3 0.00012 2.5E-09 57.6 1.9 61 196-257 83-144 (260)
177 KOG1855 Predicted RNA-binding 97.3 0.00032 7E-09 59.0 4.3 70 78-147 228-310 (484)
178 PF10309 DUF2414: Protein of u 97.2 0.0032 6.9E-08 38.8 6.9 54 82-143 6-62 (62)
179 KOG2416 Acinus (induces apopto 97.2 0.00064 1.4E-08 59.5 5.1 81 74-160 437-521 (718)
180 KOG1996 mRNA splicing factor [ 97.1 0.0024 5.3E-08 51.3 7.0 65 95-159 300-365 (378)
181 PF10309 DUF2414: Protein of u 97.0 0.0059 1.3E-07 37.6 6.9 55 181-243 5-62 (62)
182 PF15023 DUF4523: Protein of u 96.7 0.015 3.3E-07 41.8 8.1 77 76-160 81-161 (166)
183 KOG4849 mRNA cleavage factor I 96.7 0.0017 3.6E-08 53.4 3.6 75 181-255 80-156 (498)
184 KOG4676 Splicing factor, argin 96.7 0.0021 4.7E-08 53.6 4.2 73 182-255 8-83 (479)
185 PF07576 BRAP2: BRCA1-associat 96.5 0.046 1E-06 38.1 9.3 66 82-149 14-80 (110)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0048 1E-07 47.0 4.7 68 181-248 7-80 (176)
187 PF15023 DUF4523: Protein of u 96.5 0.012 2.6E-07 42.3 6.2 69 181-257 86-158 (166)
188 PF07576 BRAP2: BRCA1-associat 96.5 0.05 1.1E-06 37.9 9.2 66 182-249 14-80 (110)
189 KOG0115 RNA-binding protein p5 96.4 0.005 1.1E-07 48.6 4.3 62 82-144 32-93 (275)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.0028 6.1E-08 48.3 2.7 81 79-159 5-96 (176)
191 PF10567 Nab6_mRNP_bdg: RNA-re 96.3 0.27 5.9E-06 39.9 13.5 169 75-244 9-212 (309)
192 KOG2068 MOT2 transcription fac 96.3 0.002 4.2E-08 52.9 1.5 75 182-257 78-159 (327)
193 PF04847 Calcipressin: Calcipr 96.2 0.016 3.4E-07 44.5 6.1 59 194-258 8-68 (184)
194 PF08675 RNA_bind: RNA binding 96.0 0.03 6.4E-07 36.6 5.7 55 182-245 10-64 (87)
195 KOG2068 MOT2 transcription fac 95.9 0.0037 8E-08 51.3 1.5 85 79-163 75-165 (327)
196 KOG0804 Cytoplasmic Zn-finger 95.8 0.052 1.1E-06 46.5 7.6 68 81-150 74-142 (493)
197 KOG2135 Proteins containing th 95.6 0.007 1.5E-07 51.8 2.0 76 80-162 371-447 (526)
198 PF04847 Calcipressin: Calcipr 95.3 0.054 1.2E-06 41.5 5.9 62 94-161 8-71 (184)
199 KOG2591 c-Mpl binding protein, 95.3 0.087 1.9E-06 46.3 7.4 65 182-253 176-244 (684)
200 PF07292 NID: Nmi/IFP 35 domai 95.0 0.024 5.3E-07 37.6 2.8 73 126-203 1-74 (88)
201 KOG0804 Cytoplasmic Zn-finger 94.9 0.13 2.8E-06 44.2 7.3 68 181-250 74-142 (493)
202 KOG2193 IGF-II mRNA-binding pr 94.9 0.038 8.1E-07 46.9 4.0 70 182-257 2-72 (584)
203 KOG4285 Mitotic phosphoprotein 94.6 0.15 3.1E-06 41.6 6.6 64 182-253 198-261 (350)
204 KOG2135 Proteins containing th 94.5 0.022 4.8E-07 48.9 1.9 68 183-257 374-442 (526)
205 KOG4574 RNA-binding protein (c 94.4 0.034 7.5E-07 51.1 3.0 70 183-258 300-371 (1007)
206 KOG2253 U1 snRNP complex, subu 94.1 0.083 1.8E-06 47.4 4.8 123 73-204 32-158 (668)
207 PF11767 SET_assoc: Histone ly 93.4 0.52 1.1E-05 29.5 6.1 55 192-255 11-65 (66)
208 KOG4285 Mitotic phosphoprotein 93.2 0.2 4.3E-06 40.8 5.0 70 81-158 197-267 (350)
209 KOG4574 RNA-binding protein (c 93.0 0.082 1.8E-06 48.8 2.8 76 82-163 299-376 (1007)
210 PF11767 SET_assoc: Histone ly 92.8 0.68 1.5E-05 29.0 6.0 56 91-155 10-65 (66)
211 PF03880 DbpA: DbpA RNA bindin 92.6 0.72 1.6E-05 29.6 6.2 59 91-158 11-74 (74)
212 KOG2591 c-Mpl binding protein, 92.6 0.44 9.6E-06 42.1 6.6 72 77-155 171-246 (684)
213 PF03880 DbpA: DbpA RNA bindin 92.4 0.15 3.2E-06 32.8 2.8 59 191-258 11-74 (74)
214 KOG2253 U1 snRNP complex, subu 89.7 0.27 5.9E-06 44.3 2.7 69 178-255 37-105 (668)
215 PF14111 DUF4283: Domain of un 86.1 1.1 2.3E-05 33.1 3.7 110 92-215 28-139 (153)
216 KOG2318 Uncharacterized conser 85.3 7.3 0.00016 35.0 8.7 80 178-257 171-304 (650)
217 KOG4483 Uncharacterized conser 81.3 4.4 9.6E-05 34.6 5.6 55 80-141 390-445 (528)
218 KOG4019 Calcineurin-mediated s 76.9 2.2 4.7E-05 32.3 2.3 71 182-258 11-87 (193)
219 PRK14548 50S ribosomal protein 76.3 12 0.00026 24.7 5.5 57 83-142 22-80 (84)
220 TIGR03636 L23_arch archaeal ri 73.6 17 0.00037 23.6 5.5 57 83-142 15-73 (77)
221 KOG2891 Surface glycoprotein [ 69.9 8.8 0.00019 31.2 4.3 70 179-248 147-247 (445)
222 TIGR03636 L23_arch archaeal ri 69.5 27 0.00059 22.6 5.8 57 184-243 16-74 (77)
223 KOG2891 Surface glycoprotein [ 68.8 1.9 4.2E-05 34.8 0.5 35 80-114 148-194 (445)
224 PF10567 Nab6_mRNP_bdg: RNA-re 67.6 15 0.00033 30.2 5.3 77 181-257 15-104 (309)
225 PRK14548 50S ribosomal protein 67.3 30 0.00065 22.8 5.8 57 184-243 23-81 (84)
226 KOG2295 C2H2 Zn-finger protein 66.5 0.74 1.6E-05 40.8 -2.4 71 79-149 229-299 (648)
227 PF07530 PRE_C2HC: Associated 65.6 15 0.00033 23.1 4.0 60 196-258 2-62 (68)
228 KOG2318 Uncharacterized conser 65.3 32 0.0007 31.2 7.2 78 77-154 170-299 (650)
229 PF15513 DUF4651: Domain of un 64.9 17 0.00038 22.3 3.9 19 95-113 8-26 (62)
230 KOG4410 5-formyltetrahydrofola 63.5 17 0.00037 29.7 4.8 49 80-134 329-378 (396)
231 KOG4213 RNA-binding protein La 63.4 10 0.00022 28.8 3.3 70 80-155 110-181 (205)
232 COG5193 LHP1 La protein, small 61.5 3.8 8.3E-05 35.0 0.9 63 79-141 172-244 (438)
233 TIGR02542 B_forsyth_147 Bacter 60.6 27 0.00058 24.5 4.7 114 89-233 11-129 (145)
234 KOG1295 Nonsense-mediated deca 58.5 13 0.00028 31.8 3.5 68 81-148 7-77 (376)
235 PF07530 PRE_C2HC: Associated 58.2 25 0.00053 22.1 4.0 62 96-160 2-64 (68)
236 PF02714 DUF221: Domain of unk 56.6 30 0.00066 29.0 5.6 31 126-158 1-31 (325)
237 smart00596 PRE_C2HC PRE_C2HC d 54.2 28 0.00061 22.0 3.6 61 96-159 2-63 (69)
238 KOG2295 C2H2 Zn-finger protein 51.5 2.4 5.3E-05 37.7 -1.8 70 180-249 230-299 (648)
239 KOG4410 5-formyltetrahydrofola 50.5 52 0.0011 27.1 5.5 47 182-234 331-378 (396)
240 KOG4019 Calcineurin-mediated s 50.5 18 0.00039 27.6 2.8 75 82-162 11-91 (193)
241 KOG4483 Uncharacterized conser 50.4 38 0.00083 29.2 5.0 57 179-242 389-446 (528)
242 PF11823 DUF3343: Protein of u 47.4 33 0.00071 21.7 3.4 29 224-252 2-30 (73)
243 PTZ00191 60S ribosomal protein 46.4 78 0.0017 23.3 5.5 55 83-140 83-139 (145)
244 PF03468 XS: XS domain; Inter 46.1 29 0.00062 24.5 3.2 48 183-233 10-66 (116)
245 PRK10629 EnvZ/OmpR regulon mod 45.2 1.1E+02 0.0025 21.9 8.0 69 182-258 36-108 (127)
246 COG5638 Uncharacterized conser 43.4 1.3E+02 0.0027 26.3 7.0 40 78-117 143-187 (622)
247 KOG4365 Uncharacterized conser 43.0 3.7 8.1E-05 35.5 -1.9 78 82-160 4-81 (572)
248 KOG4008 rRNA processing protei 39.3 34 0.00073 27.3 2.9 37 76-112 35-71 (261)
249 PF03439 Spt5-NGN: Early trans 36.4 91 0.002 20.4 4.3 26 122-147 43-68 (84)
250 PRK11901 hypothetical protein; 35.9 1.2E+02 0.0026 25.6 5.7 51 93-145 254-306 (327)
251 PF11411 DNA_ligase_IV: DNA li 34.2 34 0.00074 18.5 1.5 16 91-106 19-34 (36)
252 COG5507 Uncharacterized conser 33.9 45 0.00097 22.6 2.4 21 123-143 66-86 (117)
253 PF14893 PNMA: PNMA 33.4 56 0.0012 27.7 3.5 55 79-133 16-72 (331)
254 PF06613 KorB_C: KorB C-termin 33.0 64 0.0014 19.7 2.7 22 110-132 19-40 (60)
255 PTZ00191 60S ribosomal protein 32.6 2E+02 0.0044 21.2 6.0 56 183-241 83-140 (145)
256 KOG1295 Nonsense-mediated deca 31.7 65 0.0014 27.7 3.6 67 182-248 8-77 (376)
257 PRK01178 rps24e 30S ribosomal 31.5 1.7E+02 0.0037 20.0 5.2 46 92-138 30-80 (99)
258 PF09707 Cas_Cas2CT1978: CRISP 30.6 1.6E+02 0.0034 19.6 4.6 49 80-131 24-72 (86)
259 KOG4365 Uncharacterized conser 30.6 11 0.00024 32.8 -1.0 71 183-254 5-75 (572)
260 KOG2187 tRNA uracil-5-methyltr 28.3 32 0.00069 30.9 1.3 74 85-163 29-103 (534)
261 PF08156 NOP5NT: NOP5NT (NUC12 28.1 18 0.00039 22.7 -0.1 39 196-244 27-65 (67)
262 KOG3424 40S ribosomal protein 27.7 2E+02 0.0043 20.4 4.8 46 92-138 34-84 (132)
263 PRK08559 nusG transcription an 26.4 2.1E+02 0.0046 21.1 5.3 33 108-145 36-68 (153)
264 COG0150 PurM Phosphoribosylami 26.4 24 0.00053 29.8 0.3 48 95-146 275-322 (345)
265 PF08544 GHMP_kinases_C: GHMP 26.2 1.8E+02 0.0038 18.4 6.1 43 96-144 37-80 (85)
266 cd04904 ACT_AAAH ACT domain of 24.3 1.9E+02 0.0041 18.1 5.5 51 94-145 13-65 (74)
267 KOG4008 rRNA processing protei 24.0 74 0.0016 25.5 2.5 34 181-214 40-73 (261)
268 PRK12280 rplW 50S ribosomal pr 23.3 3.2E+02 0.007 20.5 5.6 34 83-116 23-58 (158)
269 cd04880 ACT_AAAH-PDT-like ACT 22.1 2.1E+02 0.0045 17.7 6.0 51 94-145 12-66 (75)
270 PTZ00071 40S ribosomal protein 21.3 3E+02 0.0065 19.9 4.9 46 92-138 35-86 (132)
271 COG5193 LHP1 La protein, small 20.9 49 0.0011 28.6 1.0 60 182-241 175-244 (438)
272 COG0030 KsgA Dimethyladenosine 20.2 1.4E+02 0.0031 24.4 3.5 33 81-113 95-127 (259)
273 PRK11901 hypothetical protein; 20.1 4.5E+02 0.0097 22.3 6.4 61 180-245 244-306 (327)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.5e-38 Score=268.90 Aligned_cols=245 Identities=22% Similarity=0.333 Sum_probs=191.7
Q ss_pred eccccceecccccccCCceeeeeeCCCc-------cceecccccccccccccc-ccccccccCCCC--CCCCCCCCCCce
Q 025070 14 QQNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRL-FAVAEETASSSS--SSVDTPSEFARR 83 (258)
Q Consensus 14 ~~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~ 83 (258)
+.++....+...|++||+|.+|+++.++ |+|++|.....+..++.. ............ ..........++
T Consensus 12 p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~ 91 (352)
T TIGR01661 12 PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGAN 91 (352)
T ss_pred CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccce
Confidence 4444455556689999999999998774 899999998777776643 322222211100 111222335678
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEecCCc
Q 025070 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG--REIKVNITEKP 161 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g--~~l~v~~~~~~ 161 (258)
|||+|||..+++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.|||..+.| .+|.|.++...
T Consensus 92 l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 92 LYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred EEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 9999999999999999999999999999999998889999999999999999999999999999876 67888887543
Q ss_pred chhhhhhhh-------------------------------------------------------------hhc-------
Q 025070 162 LVQVDLSLL-------------------------------------------------------------QAE------- 173 (258)
Q Consensus 162 ~~~~~~~~~-------------------------------------------------------------~~~------- 173 (258)
......... ...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
T TIGR01661 172 SSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDG 251 (352)
T ss_pred CcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccc
Confidence 311000000 000
Q ss_pred ----------cCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 025070 174 ----------DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243 (258)
Q Consensus 174 ----------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l 243 (258)
.........+|||+|||+.+++++|+++|++||.|.+++|++|+.+|.++|||||+|.+.++|.+|+..|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~l 331 (352)
T TIGR01661 252 QTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSL 331 (352)
T ss_pred cccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 0000112236999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCeeeEEEeC
Q 025070 244 NNSLLEGQRIRVNKA 258 (258)
Q Consensus 244 ~g~~~~g~~l~v~~a 258 (258)
||..++||.|+|.|+
T Consensus 332 nG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 332 NGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCEECCeEEEEEEc
Confidence 999999999999986
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.8e-36 Score=250.14 Aligned_cols=169 Identities=28% Similarity=0.460 Sum_probs=155.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......++|||+|||.++|+++|+++|+.||+|.+|+++.|..+++++|||||+|.++++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45557789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHH
Q 025070 156 NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235 (258)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~ 235 (258)
.++.+... ....++|||.|||..+++++|+++|++||.|..+.++++..++.++++|||+|.+.++
T Consensus 182 ~~a~p~~~--------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 182 SYARPGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred eccccccc--------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 98864321 1123679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccCC--eeeEEEeC
Q 025070 236 AEAAISSLNNSLLEG--QRIRVNKA 258 (258)
Q Consensus 236 A~~A~~~l~g~~~~g--~~l~v~~a 258 (258)
|.+|++.||+..+.| +.|+|.||
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEEC
Confidence 999999999998865 68999886
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-36 Score=230.13 Aligned_cols=210 Identities=25% Similarity=0.410 Sum_probs=174.0
Q ss_pred cccccccCCceeeeeeCCCccceeccccccccccccccccccccccCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHH
Q 025070 22 THFTFQSRQPILQIRFPKLSYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTKI 101 (258)
Q Consensus 22 ~~~~F~~~G~i~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~L~~~ 101 (258)
.--.|++.|++.+.+++.+. .++.+...... .........-.+||+.|.+.++-++|++-
T Consensus 23 i~~lf~qig~v~~~k~i~~e---------------~~v~wa~~p~n-----Qsk~t~~~hfhvfvgdls~eI~~e~lr~a 82 (321)
T KOG0148|consen 23 IATLFNQIGSVTKTKVIFDE---------------LKVNWATAPGN-----QSKPTSNQHFHVFVGDLSPEIDNEKLREA 82 (321)
T ss_pred HHHHHHhccccccceeehhh---------------hccccccCccc-----CCCCccccceeEEehhcchhcchHHHHHH
Confidence 33489999999999988872 23333322211 11122223567999999999999999999
Q ss_pred HhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchhhhhhh--hhhccCCCCC
Q 025070 102 VQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSL--LQAEDSNFVD 179 (258)
Q Consensus 102 F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~--~~~~~~~~~~ 179 (258)
|.+||+|.++++++|..++++|||+||.|.+.++|++||+.|||..|++|.|+..|+.++........ ...--....+
T Consensus 83 F~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp 162 (321)
T KOG0148|consen 83 FAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSP 162 (321)
T ss_pred hccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999977653221111 1111233456
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..+++|++|++..+++++|++.|++||.|.+|++.++ +||+||+|++.|+|.+|+..+|+..++|+.+++.|
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 6789999999999999999999999999999999975 49999999999999999999999999999999998
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.3e-34 Score=253.64 Aligned_cols=178 Identities=25% Similarity=0.453 Sum_probs=156.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
....++|||+|||.++++++|+++|+.||+|.+|+++.|..+|+++|||||+|.+.++|++|++.|||..++|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHH
Q 025070 158 TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~ 237 (258)
......... ............++|||+|||..+++++|+++|+.||.|.++.+.+++.+|.++|||||+|.+.++|.
T Consensus 184 p~~~p~a~~---~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 184 PSNMPQAQP---IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ccccccccc---ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 543211100 00011111234478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccCCeeeEEEeC
Q 025070 238 AAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 238 ~A~~~l~g~~~~g~~l~v~~a 258 (258)
+|+..|||..++|+.|+|.+|
T Consensus 261 kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEec
Confidence 999999999999999999986
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.6e-34 Score=259.11 Aligned_cols=235 Identities=28% Similarity=0.431 Sum_probs=188.3
Q ss_pred cccccccCCceeeeeeCCCc------cceeccccccccccccccc-cccccccC-------CCCCCCCCCCCCCceEEEc
Q 025070 22 THFTFQSRQPILQIRFPKLS------YSLHNLKTASIEDSTTRLF-AVAEETAS-------SSSSSVDTPSEFARRVYIG 87 (258)
Q Consensus 22 ~~~~F~~~G~i~~i~~p~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~l~V~ 87 (258)
+...|+.||.|.+++++.+. ++++.|...+.+..+.... ........ .............++|||+
T Consensus 105 L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~ 184 (562)
T TIGR01628 105 LFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVK 184 (562)
T ss_pred HHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEe
Confidence 44489999999999998764 7899998887776655321 11111110 0000101233456789999
Q ss_pred CCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeeEEEEecCCcch
Q 025070 88 NIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG----GREIKVNITEKPLV 163 (258)
Q Consensus 88 nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~----g~~l~v~~~~~~~~ 163 (258)
|||.++|+++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++.+++..+. |+.+.|.++.....
T Consensus 185 nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 185 NLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 999999999999999999999999999997 8999999999999999999999999999999 99999998866544
Q ss_pred hhhhhhh----hhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 025070 164 QVDLSLL----QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239 (258)
Q Consensus 164 ~~~~~~~----~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A 239 (258)
....... ............+|||+||++.+++++|+++|++||.|.+++++.+ .+|.++|+|||+|.+.++|.+|
T Consensus 264 r~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A 342 (562)
T TIGR01628 264 REAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRA 342 (562)
T ss_pred hHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHH
Confidence 3211100 0111112334578999999999999999999999999999999998 5789999999999999999999
Q ss_pred HHHhcCCccCCeeeEEEeC
Q 025070 240 ISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 240 ~~~l~g~~~~g~~l~v~~a 258 (258)
+..|||+.++|+.|.|.||
T Consensus 343 ~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 343 VTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred HHHhcCCeeCCceeEEEec
Confidence 9999999999999999987
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.1e-34 Score=255.01 Aligned_cols=235 Identities=24% Similarity=0.381 Sum_probs=189.3
Q ss_pred eeccccceecccccccCCceeeeeeCCCc-------cceecccccccccccccccccc-ccccCC----CCCCCCCCCCC
Q 025070 13 SQQNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVA-EETASS----SSSSVDTPSEF 80 (258)
Q Consensus 13 ~~~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~ 80 (258)
-+.++....+...|++||+|.+|++.+|. +|+++|.....+..+....... ...... ...........
T Consensus 8 Lp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~ 87 (562)
T TIGR01628 8 LDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSG 87 (562)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccC
Confidence 34455566667799999999999998775 7899888876666655322222 111110 00111222334
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCC
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 160 (258)
..+|||+|||.++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|++|++.++|..+.|+.+.|.....
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 5689999999999999999999999999999999987 889999999999999999999999999999999999976644
Q ss_pred cchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHH
Q 025070 161 PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240 (258)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~ 240 (258)
..... .......++|||+|||..+++++|+++|+.||.|.++.+..+. +|..+|+|||+|.+.++|.+|+
T Consensus 167 ~~~~~---------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av 236 (562)
T TIGR01628 167 KHERE---------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAV 236 (562)
T ss_pred ccccc---------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHH
Confidence 43221 1122334789999999999999999999999999999999875 6888999999999999999999
Q ss_pred HHhcCCccC----CeeeEEEeC
Q 025070 241 SSLNNSLLE----GQRIRVNKA 258 (258)
Q Consensus 241 ~~l~g~~~~----g~~l~v~~a 258 (258)
+.|+|..+. |+.+.|.+|
T Consensus 237 ~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 237 EEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred HHhCCcEecccccceeeEeecc
Confidence 999999999 999998765
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.4e-33 Score=237.43 Aligned_cols=165 Identities=28% Similarity=0.470 Sum_probs=151.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
+..+|||+|||.++++++|+++|+.||+|.+|++++|..+|+++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred CcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 025070 160 KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A 239 (258)
+... .....+|||+|||..+++++|+++|++||.|..+.++.+..++.++|+|||+|++.++|.+|
T Consensus 82 ~~~~--------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~a 147 (352)
T TIGR01661 82 PSSD--------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRA 147 (352)
T ss_pred cccc--------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 5432 11236799999999999999999999999999999999888889999999999999999999
Q ss_pred HHHhcCCccCC--eeeEEEeC
Q 025070 240 ISSLNNSLLEG--QRIRVNKA 258 (258)
Q Consensus 240 ~~~l~g~~~~g--~~l~v~~a 258 (258)
++.|||..+.| +.|.|.||
T Consensus 148 i~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 148 IKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred HHHhCCCccCCCceeEEEEEC
Confidence 99999999887 56788775
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=216.10 Aligned_cols=236 Identities=23% Similarity=0.334 Sum_probs=194.1
Q ss_pred cccccccCCceeeeeeCCCc-------cceeccccccccccccccccccccccCCCC---CCCCCCCCCCceEEEcCCCC
Q 025070 22 THFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVAEETASSSS---SSVDTPSEFARRVYIGNIPR 91 (258)
Q Consensus 22 ~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~V~nl~~ 91 (258)
..+.|...|+|.++++.+|+ |.|+++.....+..+....+......+... ..++.+.-...+|||.+||.
T Consensus 58 ~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPk 137 (360)
T KOG0145|consen 58 LRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPK 137 (360)
T ss_pred HHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCc
Confidence 34589999999999999999 888988888777776654444444333222 33445556778899999999
Q ss_pred CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEecCCcchhhhhhh
Q 025070 92 NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG--REIKVNITEKPLVQVDLSL 169 (258)
Q Consensus 92 ~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g--~~l~v~~~~~~~~~~~~~~ 169 (258)
.+|..+|.++|++||.|..-+++.|..+|.+||.+||.|..+++|+.||..|||..-.| .+|.|+++..+........
T Consensus 138 tMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ 217 (360)
T KOG0145|consen 138 TMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQAL 217 (360)
T ss_pred cchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhh
Confidence 99999999999999999999999999999999999999999999999999999998754 6889998865432211100
Q ss_pred -------------------hh------------------h------------ccCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 025070 170 -------------------LQ------------------A------------EDSNFVDSPYKVYVGNLAKTVTSEMLKK 200 (258)
Q Consensus 170 -------------------~~------------------~------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 200 (258)
.+ + .-.......++|||.||.+++++.-|.+
T Consensus 218 ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQ 297 (360)
T KOG0145|consen 218 LSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQ 297 (360)
T ss_pred hHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHH
Confidence 00 0 0001112238999999999999999999
Q ss_pred HHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 201 CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 201 ~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
+|.+||.|..+++++|..+.+++|||||.+.+.++|..|+..|||..+++|.|.|+|
T Consensus 298 lFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 298 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred HhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999987
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2e-32 Score=240.31 Aligned_cols=179 Identities=26% Similarity=0.416 Sum_probs=157.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|||+|||.++++++|+++|+.||.|.+|+++.+..+|.++|||||+|.+.++|++|+ .|+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEe
Confidence 3456789999999999999999999999999999999999989999999999999999999999 589999999999998
Q ss_pred ecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHH
Q 025070 157 ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236 (258)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A 236 (258)
.+........... .......+...+|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|
T Consensus 164 ~~~~~~~~~~~~~--~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 164 SSQAEKNRAAKAA--THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred ecchhhhhhhhcc--cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 7654332211100 11111123368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccCCeeeEEEeC
Q 025070 237 EAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 237 ~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+|+..|||..++|+.|+|.||
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEc
Confidence 9999999999999999999996
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.4e-32 Score=237.34 Aligned_cols=217 Identities=27% Similarity=0.325 Sum_probs=173.3
Q ss_pred cccccccCCceeeeeeCCCc------cceeccccccccccccccccccccc-cCCCCCCCCCCCCCCceEEEcCCCCCCC
Q 025070 22 THFTFQSRQPILQIRFPKLS------YSLHNLKTASIEDSTTRLFAVAEET-ASSSSSSVDTPSEFARRVYIGNIPRNID 94 (258)
Q Consensus 22 ~~~~F~~~G~i~~i~~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nl~~~~t 94 (258)
+...|++||+|.+++++.|. ++|+.|...+.+..++......... ...... ......++|||+|||.+++
T Consensus 75 L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V---~~S~~~~rLFVgNLP~~~T 151 (578)
T TIGR01648 75 LVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV---CISVDNCRLFVGGIPKNKK 151 (578)
T ss_pred HHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc---cccccCceeEeecCCcchh
Confidence 44589999999999998774 8999999998888887654433221 111111 1223468999999999999
Q ss_pred HHHHHHHHhhCCC-eeEeEEee-eCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCCeeEEEEecCCcchhhhhhhh
Q 025070 95 NDELTKIVQEHGA-VEKAEVIY-DKYTGRSRRFAFVMMKTVEDANAVIEKLNG--TEIGGREIKVNITEKPLVQVDLSLL 170 (258)
Q Consensus 95 ~~~L~~~F~~~G~-i~~~~~~~-~~~~~~~~g~afV~f~~~~~A~~ai~~l~~--~~~~g~~l~v~~~~~~~~~~~~~~~ 170 (258)
+++|.+.|+.++. +.++.+.. ....++++|||||+|.++++|.+|++.|+. ..+.|+.|.|.|+.+.....
T Consensus 152 eeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d----- 226 (578)
T TIGR01648 152 REEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD----- 226 (578)
T ss_pred hHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc-----
Confidence 9999999999863 44444433 223467899999999999999999998864 45789999999987653211
Q ss_pred hhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc
Q 025070 171 QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK--GQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 171 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~ 248 (258)
.......++|||+||+..+++++|+++|++| |.|+.+.+++ +||||+|++.++|.+|++.|||..|
T Consensus 227 ----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i 294 (578)
T TIGR01648 227 ----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKEL 294 (578)
T ss_pred ----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEE
Confidence 1122344789999999999999999999999 9999988763 5899999999999999999999999
Q ss_pred CCeeeEEEeC
Q 025070 249 EGQRIRVNKA 258 (258)
Q Consensus 249 ~g~~l~v~~a 258 (258)
+|+.|+|.||
T Consensus 295 ~Gr~I~V~~A 304 (578)
T TIGR01648 295 EGSEIEVTLA 304 (578)
T ss_pred CCEEEEEEEc
Confidence 9999999997
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4.3e-31 Score=231.89 Aligned_cols=233 Identities=22% Similarity=0.257 Sum_probs=178.3
Q ss_pred cccccccCCceeeeeeCCCc-------cceeccccccccccccccccccccccCCC--------------CCCCCCCCCC
Q 025070 22 THFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVAEETASSS--------------SSSVDTPSEF 80 (258)
Q Consensus 22 ~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 80 (258)
....|++||+|..|+++.+. ++|+.|.....+..+..+........+.. ..........
T Consensus 106 l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~ 185 (457)
T TIGR01622 106 LYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPN 185 (457)
T ss_pred HHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCC
Confidence 34489999999999999874 89999998877776665543333222110 0001111233
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCC
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 160 (258)
.++|||+|||..+|+++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999998889999999999999999999999999999999999999642
Q ss_pred cchhhhh--------------------------------h---------h---------------hh---h---------
Q 025070 161 PLVQVDL--------------------------------S---------L---------------LQ---A--------- 172 (258)
Q Consensus 161 ~~~~~~~--------------------------------~---------~---------------~~---~--------- 172 (258)
....... . . .. +
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 2110000 0 0 00 0
Q ss_pred --------ccCCCCCCCCeEEEcCCCCCCC----------HHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHH
Q 025070 173 --------EDSNFVDSPYKVYVGNLAKTVT----------SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234 (258)
Q Consensus 173 --------~~~~~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~ 234 (258)
..........+|+|.||....+ .+||++.|.+||.|..+.+... ...|++||+|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 0000123457888999955443 3689999999999999988742 46799999999999
Q ss_pred HHHHHHHHhcCCccCCeeeEEEeC
Q 025070 235 DAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 235 ~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+|.+|++.|||+.|+|+.|.+.|.
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEE
Confidence 999999999999999999999873
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.98 E-value=6.3e-31 Score=233.79 Aligned_cols=230 Identities=19% Similarity=0.253 Sum_probs=174.1
Q ss_pred CCceeeeeeCCCc-cceeccccccccccccccccccccccC------------C------CC-------------CCCCC
Q 025070 29 RQPILQIRFPKLS-YSLHNLKTASIEDSTTRLFAVAEETAS------------S------SS-------------SSVDT 76 (258)
Q Consensus 29 ~G~i~~i~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~------~~-------------~~~~~ 76 (258)
.++|..+.+..+. |||++|...+.+..+..+......... + .. .....
T Consensus 211 ~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (509)
T TIGR01642 211 GKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTT 290 (509)
T ss_pred CCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCccccccccccccccc
Confidence 4678888887765 999999988777766654322211100 0 00 00011
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|||+|||..+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|+.|++.|+|..++|+.|.|.
T Consensus 291 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 291 VLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 22345799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCcchhhhhhhhh---------h-----ccCCCCCCCCeEEEcCCCCC--C--------CHHHHHHHHhcCCCeEEEE
Q 025070 157 ITEKPLVQVDLSLLQ---------A-----EDSNFVDSPYKVYVGNLAKT--V--------TSEMLKKCFSEKGQVLSAK 212 (258)
Q Consensus 157 ~~~~~~~~~~~~~~~---------~-----~~~~~~~~~~~l~v~nl~~~--~--------~~~~l~~~f~~~G~v~~~~ 212 (258)
++............. . .......+..+|++.|+... + ..++|+++|++||.|..+.
T Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~ 450 (509)
T TIGR01642 371 RACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIV 450 (509)
T ss_pred ECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEE
Confidence 985432211100000 0 00111235578999999542 1 2368999999999999999
Q ss_pred EeeCC---CCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 213 VLRVP---GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 213 i~~~~---~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
|+++. .++...|+|||+|.+.++|.+|+.+|||+.|+|+.|.|.|.
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFY 499 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 98752 34566799999999999999999999999999999999883
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=2.2e-32 Score=222.64 Aligned_cols=243 Identities=21% Similarity=0.264 Sum_probs=194.7
Q ss_pred eccccceecccccccCCceeeeeeCCCc-------cceecccccccccccccc-ccccccc--cCCCCCC----CCCCCC
Q 025070 14 QQNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRL-FAVAEET--ASSSSSS----VDTPSE 79 (258)
Q Consensus 14 ~~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~----~~~~~~ 79 (258)
++++........|++||.|.+|.+++|+ +||+.|...+.++.+..- .+..... ..+.... +.....
T Consensus 43 prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~ 122 (510)
T KOG0144|consen 43 PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIV 122 (510)
T ss_pred CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccc
Confidence 4455555566699999999999999999 899999998877776532 2221111 1111111 111223
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc-C--CeeEEEE
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI-G--GREIKVN 156 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~-~--g~~l~v~ 156 (258)
.+++|||+.|++.+||.+++++|++||.|++|+|++|. .|.+||||||.|.+.|.|..||+.||+..- . ..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999999 899999999999999999999999999874 3 5799999
Q ss_pred ecCCcchhhhhhh-------------------------------------------------------------------
Q 025070 157 ITEKPLVQVDLSL------------------------------------------------------------------- 169 (258)
Q Consensus 157 ~~~~~~~~~~~~~------------------------------------------------------------------- 169 (258)
|+++.+.+.....
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 9988766433200
Q ss_pred --------------------------------------------------------------------------------
Q 025070 170 -------------------------------------------------------------------------------- 169 (258)
Q Consensus 170 -------------------------------------------------------------------------------- 169 (258)
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence
Q ss_pred ---------------------------------------------------hhhccCCCCCCCCeEEEcCCCCCCCHHHH
Q 025070 170 ---------------------------------------------------LQAEDSNFVDSPYKVYVGNLAKTVTSEML 198 (258)
Q Consensus 170 ---------------------------------------------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 198 (258)
.........+...+|||.+||.+.-+.+|
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 00000000111178999999999999999
Q ss_pred HHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 199 ~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
...|.+||.|.+.++..|+.|+.++.|+||.|++..+|..|+.+|||..+++++++|+.
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 99999999999999999999999999999999999999999999999999999999975
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.6e-30 Score=226.98 Aligned_cols=232 Identities=17% Similarity=0.153 Sum_probs=172.5
Q ss_pred cceecccccccCCceeeeeeCCCc-cceeccccccccccccccc---cccccccC-------CCC---CC----CCCCCC
Q 025070 18 IFSKTHFTFQSRQPILQIRFPKLS-YSLHNLKTASIEDSTTRLF---AVAEETAS-------SSS---SS----VDTPSE 79 (258)
Q Consensus 18 ~~s~~~~~F~~~G~i~~i~~p~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~---~~----~~~~~~ 79 (258)
....+...|++||+|.++.+++++ +|+++|...+.+..+.... .......+ ... .. ......
T Consensus 15 te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~ 94 (481)
T TIGR01649 15 VEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPN 94 (481)
T ss_pred CHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCC
Confidence 333345589999999999998765 8999999887776665421 11111110 000 00 001112
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEe
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG--REIKVNI 157 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g--~~l~v~~ 157 (258)
...+|+|+||+..+|+++|+++|+.||.|.+|.++++. .+|+|||+|.+.++|.+|++.|||..+.+ +.|+|.+
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 23479999999999999999999999999999998764 24689999999999999999999999954 5888888
Q ss_pred cCCcchh------hh-------------hhh------hhhc---------------------------------------
Q 025070 158 TEKPLVQ------VD-------------LSL------LQAE--------------------------------------- 173 (258)
Q Consensus 158 ~~~~~~~------~~-------------~~~------~~~~--------------------------------------- 173 (258)
++..... .. ... ....
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 7642210 00 000 0000
Q ss_pred -----------------cCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHH
Q 025070 174 -----------------DSNFVDSPYKVYVGNLAK-TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235 (258)
Q Consensus 174 -----------------~~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~ 235 (258)
......+..+|||+|||+ .+++++|+++|+.||.|.+++++++ .+|+|||+|.+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~ 325 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQ 325 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHH
Confidence 000123457999999998 6999999999999999999999974 36899999999999
Q ss_pred HHHHHHHhcCCccCCeeeEEEeC
Q 025070 236 AEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 236 A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
|.+|+..|||..+.|+.|+|.++
T Consensus 326 A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 326 AQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred HHHHHHHhCCCEECCceEEEEEc
Confidence 99999999999999999999875
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.2e-30 Score=227.48 Aligned_cols=173 Identities=22% Similarity=0.313 Sum_probs=142.3
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 79 EFARRVYIGNIPR-NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 79 ~~~~~l~V~nl~~-~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
.+.++|||+|||. .+|+++|+++|+.||.|.+|+++.+. +|+|||+|.+.++|+.|++.|||..+.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3567999999998 69999999999999999999998863 58999999999999999999999999999999998
Q ss_pred cCCcchhhhhhh------------hh--------hc---cCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC--eEEEE
Q 025070 158 TEKPLVQVDLSL------------LQ--------AE---DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQ--VLSAK 212 (258)
Q Consensus 158 ~~~~~~~~~~~~------------~~--------~~---~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~ 212 (258)
+........... .. .. .....++..+|||.|||..+++++|+++|+.||. +..++
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 855422111000 00 00 0011235678999999999999999999999998 88888
Q ss_pred EeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCee------eEEEeC
Q 025070 213 VLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR------IRVNKA 258 (258)
Q Consensus 213 i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~------l~v~~a 258 (258)
+.... +..+++|||+|.+.++|.+|+..|||..++|+. |+|.||
T Consensus 428 ~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 428 FFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred EecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 76433 235789999999999999999999999999985 999986
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.3e-31 Score=216.03 Aligned_cols=226 Identities=25% Similarity=0.282 Sum_probs=185.5
Q ss_pred eccccceecccccccCCceeeeeeCCCc-------cceeccccccccccccccccccccccCCCCCCCCCCCCCCceEEE
Q 025070 14 QQNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYI 86 (258)
Q Consensus 14 ~~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 86 (258)
+.++...-+...|+..|+|..+|+..|. |||+.|.+...+..+++......... ...--......++.|||
T Consensus 92 PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~--GK~igvc~Svan~RLFi 169 (506)
T KOG0117|consen 92 PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP--GKLLGVCVSVANCRLFI 169 (506)
T ss_pred CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC--CCEeEEEEeeecceeEe
Confidence 3445555566799999999999999995 99999999998888877655443321 11111122345588999
Q ss_pred cCCCCCCCHHHHHHHHhhCC-CeeEeEEeeeCCC-CCcccEEEEEeCCHHHHHHHHHHhCC--CccCCeeEEEEecCCcc
Q 025070 87 GNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKYT-GRSRRFAFVMMKTVEDANAVIEKLNG--TEIGGREIKVNITEKPL 162 (258)
Q Consensus 87 ~nl~~~~t~~~L~~~F~~~G-~i~~~~~~~~~~~-~~~~g~afV~f~~~~~A~~ai~~l~~--~~~~g~~l~v~~~~~~~ 162 (258)
+|||.+.++++|++.+++.+ -|.+|.+..++.+ .++||||||+|.++..|..|-++|-. +.+.|..+.|.|+.+..
T Consensus 170 G~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~ 249 (506)
T KOG0117|consen 170 GNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEE 249 (506)
T ss_pred ccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCccc
Confidence 99999999999999999988 4778888877744 57999999999999999999988743 45789999999998776
Q ss_pred hhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 025070 163 VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242 (258)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~ 242 (258)
..... .......|||+||+.++|+|.|+.+|++||.|+.|+.++ .||||.|.+.++|.+|++.
T Consensus 250 e~ded---------~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--------DYaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 250 EPDED---------TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--------DYAFVHFAEREDAVKAMKE 312 (506)
T ss_pred CCChh---------hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--------ceeEEeecchHHHHHHHHH
Confidence 53322 233447899999999999999999999999999988764 5899999999999999999
Q ss_pred hcCCccCCeeeEEEeC
Q 025070 243 LNNSLLEGQRIRVNKA 258 (258)
Q Consensus 243 l~g~~~~g~~l~v~~a 258 (258)
+||..|+|..|.|.+|
T Consensus 313 ~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLA 328 (506)
T ss_pred hcCceecCceEEEEec
Confidence 9999999999999987
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.9e-31 Score=215.35 Aligned_cols=171 Identities=30% Similarity=0.474 Sum_probs=152.3
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc---CC
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI---GG 150 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~---~g 150 (258)
.+.++...-++||+.+|..++|.||+++|++||.|.+|.+++|+.+|.++|||||.|.++++|.+|+.+||+... ..
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 334446667899999999999999999999999999999999999999999999999999999999999988763 46
Q ss_pred eeEEEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEe
Q 025070 151 REIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230 (258)
Q Consensus 151 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f 230 (258)
.++.|++++....+. ...++|||+-|+..++|.+++++|.+||.|+++.|++|+ .+.+||||||+|
T Consensus 107 ~pvqvk~Ad~E~er~-------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~f 172 (510)
T KOG0144|consen 107 HPVQVKYADGERERI-------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKF 172 (510)
T ss_pred cceeecccchhhhcc-------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEE
Confidence 899999886554331 334789999999999999999999999999999999988 689999999999
Q ss_pred CCHHHHHHHHHHhcCCc-cCCe--eeEEEeC
Q 025070 231 SSEEDAEAAISSLNNSL-LEGQ--RIRVNKA 258 (258)
Q Consensus 231 ~~~~~A~~A~~~l~g~~-~~g~--~l~v~~a 258 (258)
.+.+.|..|++.|||.. +.|+ .|.|.||
T Consensus 173 stke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 173 STKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred ehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 99999999999999984 6665 6888887
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.97 E-value=2e-30 Score=188.73 Aligned_cols=169 Identities=30% Similarity=0.489 Sum_probs=153.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
+.....+|||+||+..++++.|+++|-+.|+|.++++++|..+...+||||++|.++|+|+.|++-||...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeeCCCCCCCccEEEEEeCCHHH
Q 025070 157 ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLS-AKVLRVPGTSKSSGFGFVTFSSEED 235 (258)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~~~~fV~f~~~~~ 235 (258)
.+..... ......+|||+||.+.+++..|.+.|+.||.+.+ -.+++++.+|.++++|||.|++.+.
T Consensus 85 kas~~~~-------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfea 151 (203)
T KOG0131|consen 85 KASAHQK-------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEA 151 (203)
T ss_pred ecccccc-------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHH
Confidence 8862221 1223368999999999999999999999998766 4888999999999999999999999
Q ss_pred HHHHHHHhcCCccCCeeeEEEeC
Q 025070 236 AEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 236 A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+.+|+.+|||..+.++.+.|+||
T Consensus 152 sd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 152 SDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred HHHHHHHhccchhcCCceEEEEE
Confidence 99999999999999999999986
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=194.53 Aligned_cols=168 Identities=30% Similarity=0.460 Sum_probs=154.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|.|.-||.++|+++++.+|...|+|++|++++|+.+|.+.||+||.|-+++||++|+..|||..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHH
Q 025070 157 ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236 (258)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A 236 (258)
++++.... ....+|||.+||..++..+|.++|++||.|.-.+|+.|..+|.++|.|||+|+..++|
T Consensus 117 yARPSs~~--------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 117 YARPSSDS--------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred eccCChhh--------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 99876542 2226799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccCCe--eeEEEeC
Q 025070 237 EAAISSLNNSLLEGQ--RIRVNKA 258 (258)
Q Consensus 237 ~~A~~~l~g~~~~g~--~l~v~~a 258 (258)
.+|+..|||..=.|. .|.|.||
T Consensus 183 e~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 183 EEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred HHHHHhccCCCCCCCCCCeEEEec
Confidence 999999999876554 6888876
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=210.23 Aligned_cols=235 Identities=24% Similarity=0.306 Sum_probs=175.9
Q ss_pred ccccccCCceeeeeeCCCc-------cceecccccccccccc-------------ccccccccccC-------------C
Q 025070 23 HFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTT-------------RLFAVAEETAS-------------S 69 (258)
Q Consensus 23 ~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-------------~ 69 (258)
..+|+.+|||....+..+. |+++.|...+-...+. .+.....-..+ +
T Consensus 23 ~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~ 102 (678)
T KOG0127|consen 23 EEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKP 102 (678)
T ss_pred HHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcc
Confidence 3489999999999888877 7777665543322221 11111000000 0
Q ss_pred CCC-CCCCC--CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 025070 70 SSS-SVDTP--SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT 146 (258)
Q Consensus 70 ~~~-~~~~~--~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~ 146 (258)
... .+... ..+...|.|+|||+.|...+|..+|+.||.|..+.|++.. +|+-.|||||+|....+|.+|++.+|+.
T Consensus 103 ~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~ 181 (678)
T KOG0127|consen 103 IEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGN 181 (678)
T ss_pred cccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCc
Confidence 000 00011 2236789999999999999999999999999999999887 6666699999999999999999999999
Q ss_pred ccCCeeEEEEecCCcchhhhhh--------------------------------hhhhcc--------------------
Q 025070 147 EIGGREIKVNITEKPLVQVDLS--------------------------------LLQAED-------------------- 174 (258)
Q Consensus 147 ~~~g~~l~v~~~~~~~~~~~~~--------------------------------~~~~~~-------------------- 174 (258)
.+.||++.|.|+-+........ .....+
T Consensus 182 ~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee 261 (678)
T KOG0127|consen 182 KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEE 261 (678)
T ss_pred eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccc
Confidence 9999999999985432211100 000000
Q ss_pred ------------------------CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEe
Q 025070 175 ------------------------SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230 (258)
Q Consensus 175 ------------------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f 230 (258)
........+|||+|||+.+++++|.+.|++||.|.++.++.++.||.+.|.|||.|
T Consensus 262 ~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~F 341 (678)
T KOG0127|consen 262 EDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKF 341 (678)
T ss_pred ccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEe
Confidence 00011127899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHh-----cC-CccCCeeeEEEeC
Q 025070 231 SSEEDAEAAISSL-----NN-SLLEGQRIRVNKA 258 (258)
Q Consensus 231 ~~~~~A~~A~~~l-----~g-~~~~g~~l~v~~a 258 (258)
.+..+|..|+.+. .| ..++||.|+|..|
T Consensus 342 kt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 342 KTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred ccHHHHHHHHHhcCccCCCceEEEeccEEeeeec
Confidence 9999999999976 23 5789999999876
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1.8e-28 Score=218.03 Aligned_cols=177 Identities=20% Similarity=0.398 Sum_probs=143.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhC------------CCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEH------------GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~------------G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~ 142 (258)
.......++|||+|||.++|+++|+++|..+ +.|..+.+ +..+|||||+|.+.++|+.|| .
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~ 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-A 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-c
Confidence 3445677899999999999999999999975 23333333 446799999999999999999 6
Q ss_pred hCCCccCCeeEEEEecCCcchhhhhh--hh-------h------hccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC
Q 025070 143 LNGTEIGGREIKVNITEKPLVQVDLS--LL-------Q------AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQ 207 (258)
Q Consensus 143 l~~~~~~g~~l~v~~~~~~~~~~~~~--~~-------~------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 207 (258)
|+|..+.|+.|.|............. .. . ..........++|||+|||..+++++|+++|+.||.
T Consensus 242 l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 321 (509)
T TIGR01642 242 LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD 321 (509)
T ss_pred CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 99999999999997654332110000 00 0 000112234579999999999999999999999999
Q ss_pred eEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 208 VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 208 v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
|..+.++++..+|.++|||||+|.+.++|..|+..|||..++|+.|.|.+|
T Consensus 322 i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 322 LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 999999999999999999999999999999999999999999999999986
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=2.3e-28 Score=214.43 Aligned_cols=146 Identities=12% Similarity=0.236 Sum_probs=113.8
Q ss_pred ccccceecccccccCCceeeeeeCCCc-------cceeccccccccccccc-cccccccccC-----CCC--------CC
Q 025070 15 QNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTR-LFAVAEETAS-----SSS--------SS 73 (258)
Q Consensus 15 ~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~--------~~ 73 (258)
...........|++||+|.+|+++.|. |+|++|.....+..+.. +......+.. +.. ..
T Consensus 117 ~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~ 196 (612)
T TIGR01645 117 FELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDM 196 (612)
T ss_pred CCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccccccccccc
Confidence 334444455689999999999998774 89998888766666553 2221111111 000 00
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
........++|||+|||+++++++|+++|+.||.|.++++.++..+|.++|||||+|.+.++|.+|++.||+..++|+.|
T Consensus 197 ~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~L 276 (612)
T TIGR01645 197 VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 276 (612)
T ss_pred ccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 11122345789999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEecCC
Q 025070 154 KVNITEK 160 (258)
Q Consensus 154 ~v~~~~~ 160 (258)
+|.++.+
T Consensus 277 rV~kAi~ 283 (612)
T TIGR01645 277 RVGKCVT 283 (612)
T ss_pred EEEecCC
Confidence 9998764
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.5e-28 Score=213.83 Aligned_cols=160 Identities=29% Similarity=0.479 Sum_probs=137.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CeeEEEE
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG-GREIKVN 156 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~-g~~l~v~ 156 (258)
+...++|||+|||.++++++|+++|++||.|.+++++.| .+|.++|||||+|.+.++|++||+.||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 59999999999999999999999999999885 7877776
Q ss_pred ecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEe-eCCCCCCCccEEEEEeCCHH
Q 025070 157 ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQ-VLSAKVL-RVPGTSKSSGFGFVTFSSEE 234 (258)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~i~-~~~~~~~~~~~~fV~f~~~~ 234 (258)
++. ..++|||.|||..+++++|.+.|.+++. +..+.+. .....+++++||||+|++.+
T Consensus 134 ~S~--------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~e 193 (578)
T TIGR01648 134 ISV--------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHR 193 (578)
T ss_pred ccc--------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHH
Confidence 542 1378999999999999999999999853 4444333 33345678999999999999
Q ss_pred HHHHHHHHhcC--CccCCeeeEEEeC
Q 025070 235 DAEAAISSLNN--SLLEGQRIRVNKA 258 (258)
Q Consensus 235 ~A~~A~~~l~g--~~~~g~~l~v~~a 258 (258)
+|.+|++.|+. ..+.|+.|.|.||
T Consensus 194 dAa~AirkL~~gki~l~Gr~I~VdwA 219 (578)
T TIGR01648 194 AAAMARRKLMPGRIQLWGHVIAVDWA 219 (578)
T ss_pred HHHHHHHHhhccceEecCceEEEEee
Confidence 99999998864 3578999999986
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.8e-28 Score=203.24 Aligned_cols=176 Identities=22% Similarity=0.379 Sum_probs=153.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
.||||++||+.++.++|.++|+.+|+|..+.++.+..++.++||+||.|.-.+|+++|+....+..++|+.|.|..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999988899999999999999999999999999999999999998665
Q ss_pred chhhhhhh----------hh--hccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEE
Q 025070 162 LVQVDLSL----------LQ--AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVT 229 (258)
Q Consensus 162 ~~~~~~~~----------~~--~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~ 229 (258)
........ .+ +.......+...|.|+|||+.+...+|+.+|+.||.|..+.|++....+.+ |||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEE
Confidence 44331100 00 001111233688999999999999999999999999999999987755555 999999
Q ss_pred eCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 230 FSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 230 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
|....+|..|+..+||..|+||.|.|.||
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeee
Confidence 99999999999999999999999999998
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.9e-27 Score=194.73 Aligned_cols=163 Identities=29% Similarity=0.500 Sum_probs=145.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc-CCeeEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI-GGREIK 154 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~-~g~~l~ 154 (258)
..+...+.|||+.||.++.|++|..+|++.|+|-+++++.|+.+|.+||||||.|.+.++|++|++.||+++| .|+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3446778999999999999999999999999999999999988999999999999999999999999999998 699999
Q ss_pred EEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEeeCC-CCCCCccEEEEEeCC
Q 025070 155 VNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQ-VLSAKVLRVP-GTSKSSGFGFVTFSS 232 (258)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~i~~~~-~~~~~~~~~fV~f~~ 232 (258)
|+.+... +.|||+|||.+.++++|++.+++.+. |..|.++..+ ...+.||||||+|.+
T Consensus 158 vc~Svan--------------------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~ 217 (506)
T KOG0117|consen 158 VCVSVAN--------------------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYES 217 (506)
T ss_pred EEEeeec--------------------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeec
Confidence 9987533 78999999999999999999999864 7777666544 456889999999999
Q ss_pred HHHHHHHHHHhc-CC-ccCCeeeEEEeC
Q 025070 233 EEDAEAAISSLN-NS-LLEGQRIRVNKA 258 (258)
Q Consensus 233 ~~~A~~A~~~l~-g~-~~~g~~l~v~~a 258 (258)
...|..|.++|- |+ ++-|+.+.|.||
T Consensus 218 H~~Aa~aRrKl~~g~~klwgn~~tVdWA 245 (506)
T KOG0117|consen 218 HRAAAMARRKLMPGKIKLWGNAITVDWA 245 (506)
T ss_pred chhHHHHHhhccCCceeecCCcceeecc
Confidence 999999998774 33 578999999998
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.9e-27 Score=198.46 Aligned_cols=219 Identities=30% Similarity=0.459 Sum_probs=181.9
Q ss_pred ccccceecccccccCCceeeeeeCCCc----cceeccccccc-------------cccccccccccccccCCCCCCCCCC
Q 025070 15 QNLIFSKTHFTFQSRQPILQIRFPKLS----YSLHNLKTASI-------------EDSTTRLFAVAEETASSSSSSVDTP 77 (258)
Q Consensus 15 ~~~~~s~~~~~F~~~G~i~~i~~p~~~----~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (258)
.++..+.+-..|++.|++++|++.+|. |++++|..... .+...+++|...+..
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~---------- 77 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS---------- 77 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc----------
Confidence 555556666689999999999998875 66666666544 344445555444433
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
.|||.||+++++..+|.++|+.||+|.+|++.++. .| ++|| ||+|.+++.|++|++.+||..+.|+.|.|..
T Consensus 78 -----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 78 -----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred -----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 29999999999999999999999999999999998 67 8999 9999999999999999999999999999998
Q ss_pred cCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHH
Q 025070 158 TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~ 237 (258)
............. ....-..+++.+.+..++++.|.+.|..+|.|.++.++.+. .|.+++|+||.|+++++|.
T Consensus 150 ~~~~~er~~~~~~------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~ 222 (369)
T KOG0123|consen 150 FERKEEREAPLGE------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAK 222 (369)
T ss_pred ccchhhhcccccc------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHH
Confidence 8766554322111 22333678999999999999999999999999999999877 4568999999999999999
Q ss_pred HHHHHhcCCccCCeeeEEEeC
Q 025070 238 AAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 238 ~A~~~l~g~~~~g~~l~v~~a 258 (258)
.|+..|+|..++|..+.|.-|
T Consensus 223 ~av~~l~~~~~~~~~~~V~~a 243 (369)
T KOG0123|consen 223 KAVETLNGKIFGDKELYVGRA 243 (369)
T ss_pred HHHHhccCCcCCccceeeccc
Confidence 999999999999988877643
No 27
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=183.98 Aligned_cols=178 Identities=23% Similarity=0.393 Sum_probs=155.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc---CCeeEEE
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI---GGREIKV 155 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~---~g~~l~v 155 (258)
..+++|||+.|.+.-.|+|++.+|..||.|++|.+++.. +|.+||||||.|.+..+|+.||..|||... ....|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 367899999999999999999999999999999999999 999999999999999999999999999874 3578999
Q ss_pred EecCCcchhhhhhh------------------------------------------------------------------
Q 025070 156 NITEKPLVQVDLSL------------------------------------------------------------------ 169 (258)
Q Consensus 156 ~~~~~~~~~~~~~~------------------------------------------------------------------ 169 (258)
+++++.+++.-+..
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 99987766533200
Q ss_pred --------------------------------------------------------------------------------
Q 025070 170 -------------------------------------------------------------------------------- 169 (258)
Q Consensus 170 -------------------------------------------------------------------------------- 169 (258)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred ------------------hhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeC
Q 025070 170 ------------------LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231 (258)
Q Consensus 170 ------------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~ 231 (258)
.-.......+..++|||..||.+..+.+|.+.|-+||.|.+.++..|+.|+.+++|+||.|+
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecC
Confidence 00000111223389999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 232 SEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 232 ~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
++.+|..|+.+|||..|+-++|+|++
T Consensus 336 Np~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 336 NPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CchhHHHHHHHhcchhhhhhhhhhhh
Confidence 99999999999999999999999874
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=1.8e-26 Score=179.52 Aligned_cols=144 Identities=28% Similarity=0.564 Sum_probs=134.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
.+|||+|||.++++.+|+.+|++||.|.+|.|+.+ ||||..++...|+.||+.||+..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999865 8999999999999999999999999999999987655
Q ss_pred chhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 025070 162 LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241 (258)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~ 241 (258)
. ..+++|+|+|+.+.++.++|+..|++||.|..++|++ +|+||.|+..++|..|++
T Consensus 75 s----------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air 130 (346)
T KOG0109|consen 75 S----------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIR 130 (346)
T ss_pred C----------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHh
Confidence 2 3447899999999999999999999999999999996 789999999999999999
Q ss_pred HhcCCccCCeeeEEEe
Q 025070 242 SLNNSLLEGQRIRVNK 257 (258)
Q Consensus 242 ~l~g~~~~g~~l~v~~ 257 (258)
.|+++.+.|++++|+.
T Consensus 131 ~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 131 GLDNTEFQGKRMHVQL 146 (346)
T ss_pred cccccccccceeeeee
Confidence 9999999999999985
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=5.9e-26 Score=195.61 Aligned_cols=170 Identities=25% Similarity=0.418 Sum_probs=146.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCC----CcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG----RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~----~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
+|||.||++++|.++|..+|...|.|.++.|.... ++ .+.|||||+|.+.++|+.|++.|+|..+.|+.|.+.++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 39999999999999999999999999999887655 33 35699999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHH
Q 025070 159 EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~ 238 (258)
...... .. ..........++|+|+|+|..++..+++.+|..||.+.+++|++-...+..+|+|||+|-++.+|.+
T Consensus 596 ~~k~~~-~~----gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 596 ENKPAS-TV----GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred cCcccc-cc----ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 722111 00 0111122225789999999999999999999999999999999865556778999999999999999
Q ss_pred HHHHhcCCccCCeeeEEEeC
Q 025070 239 AISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 239 A~~~l~g~~~~g~~l~v~~a 258 (258)
|+..|.++.+.||+|.++||
T Consensus 671 A~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 671 AFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred HHHhhcccceechhhheehh
Confidence 99999999999999999998
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=8.2e-26 Score=189.76 Aligned_cols=243 Identities=27% Similarity=0.371 Sum_probs=195.4
Q ss_pred eeccccceeccc----ccccCCceeeeeeCCCc-----cceeccccccccccccccccccccccCCC-----------CC
Q 025070 13 SQQNLIFSKTHF----TFQSRQPILQIRFPKLS-----YSLHNLKTASIEDSTTRLFAVAEETASSS-----------SS 72 (258)
Q Consensus 13 ~~~~~~~s~~~~----~F~~~G~i~~i~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 72 (258)
.-+++..+.+.. .|+.||.|+++++..+. + |+.|.....+..++............. ..
T Consensus 80 ~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 80 FIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREA 158 (369)
T ss_pred eecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcc
Confidence 344555555555 89999999999999988 7 999999887777766443333322210 01
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 73 SVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 73 ~~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
+..........++|.|++.+.++..|..+|..+|.|.++.++.+. .|.++||+||+|.+.++|..|++.+++..+.+..
T Consensus 159 ~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~ 237 (369)
T KOG0123|consen 159 PLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKE 237 (369)
T ss_pred cccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccc
Confidence 111134556789999999999999999999999999999999998 7889999999999999999999999999999999
Q ss_pred EEEEecCCcchhhhhhhh----hhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEE
Q 025070 153 IKVNITEKPLVQVDLSLL----QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228 (258)
Q Consensus 153 l~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV 228 (258)
+.|..+.........-.. .............|||.|++..++.+.|+..|+.||.|.++++..+. .|.++|++||
T Consensus 238 ~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV 316 (369)
T KOG0123|consen 238 LYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFV 316 (369)
T ss_pred eeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEE
Confidence 999998774333221111 11222224455789999999999999999999999999999999876 5799999999
Q ss_pred EeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 229 TFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 229 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+|.+.++|.+|+..+||..++|+.+.|.+|
T Consensus 317 ~fs~~eeA~~A~~~~n~~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 317 EFSSPEEAKKAMTEMNGRLIGGKPLYVAVA 346 (369)
T ss_pred EcCCHHHHHHHHHhhChhhhcCCchhhhHH
Confidence 999999999999999999999999888654
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=9.3e-26 Score=189.53 Aligned_cols=230 Identities=23% Similarity=0.277 Sum_probs=167.4
Q ss_pred ccccccCCceeeeeeCCCc-------cceeccccccccccccccccccccccCCC------------CCCC----CCCCC
Q 025070 23 HFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVAEETASSS------------SSSV----DTPSE 79 (258)
Q Consensus 23 ~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~----~~~~~ 79 (258)
..+|+.+|.|..|+++.|. .+++.|........++.+.+....+.+.. .... .....
T Consensus 197 ~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~ 276 (549)
T KOG0147|consen 197 EEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTG 276 (549)
T ss_pred HHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhcccccccccccc
Confidence 3489999999999999998 55666655544444333332222221110 0000 11123
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
+...|||+||.+++++++|+..|++||.|+.|.+..|..+|.++||+||+|.+.++|++|++.|||..+.|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 33449999999999999999999999999999999999899999999999999999999999999999999999997643
Q ss_pred Ccchhhhh-----------------------------------------------------hh-hh----hccCCCC---
Q 025070 160 KPLVQVDL-----------------------------------------------------SL-LQ----AEDSNFV--- 178 (258)
Q Consensus 160 ~~~~~~~~-----------------------------------------------------~~-~~----~~~~~~~--- 178 (258)
........ .. .. .......
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 22111100 00 00 0001111
Q ss_pred ----CCCCeEEEcCCCCC--CC--------HHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 025070 179 ----DSPYKVYVGNLAKT--VT--------SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244 (258)
Q Consensus 179 ----~~~~~l~v~nl~~~--~~--------~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~ 244 (258)
.+..++.+.|+-.. .| .+|+.+.|.+||+|..|.+.+ .+.|+.||.|.+.+.|..|+.+||
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~-----ns~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDK-----NSAGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEcc-----CCCceEEEecCcHHHHHHHHHHHh
Confidence 34466777777332 22 278889999999999988876 344999999999999999999999
Q ss_pred CCccCCeeeEEEe
Q 025070 245 NSLLEGQRIRVNK 257 (258)
Q Consensus 245 g~~~~g~~l~v~~ 257 (258)
|++|.|+.|...|
T Consensus 512 grWF~gr~Ita~~ 524 (549)
T KOG0147|consen 512 GRWFAGRMITAKY 524 (549)
T ss_pred hhhhccceeEEEE
Confidence 9999999999887
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.9e-26 Score=181.52 Aligned_cols=175 Identities=27% Similarity=0.503 Sum_probs=153.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
-.++|||+.+.+++.|+.|+.-|..||+|.++.+.-|+.+++.+|||||+|+-.|.|+.|++.|||..++||.|+|.+..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred Ccch-hhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHH
Q 025070 160 KPLV-QVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238 (258)
Q Consensus 160 ~~~~-~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~ 238 (258)
.-.. .......+.+. ..-+.+||..+.++++++||+..|+-||.|.++.+.+++..+..+||||++|.+..+-..
T Consensus 192 NmpQAQpiID~vqeeA----k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEA----KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CCcccchHHHHHHHHH----HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 2111 11111111111 122789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccCCeeeEEEeC
Q 025070 239 AISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 239 A~~~l~g~~~~g~~l~v~~a 258 (258)
|+..||=..++|.-|+|..+
T Consensus 268 AiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhhcchhhcccceEecccc
Confidence 99999999999999998754
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=6.6e-24 Score=178.46 Aligned_cols=182 Identities=26% Similarity=0.402 Sum_probs=156.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
..+....+++|+-.++...++.+|.++|+..|.|.+|+++.|..++.++|.|||+|-+.+....|| .|.|..+.|.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeE
Confidence 344466789999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred EEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHH
Q 025070 155 VNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234 (258)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~ 234 (258)
|........................+-..|||+||..++++++|+.+|++||.|+.|.+.+|.++|.++||||++|.+.+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 98775544432221111111111112223999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCeeeEEEe
Q 025070 235 DAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 235 ~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
+|++|+..|||..+-|+.|+|..
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred HHHHHHHHhccceecCceEEEEE
Confidence 99999999999999999999863
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=5.5e-22 Score=159.25 Aligned_cols=237 Identities=11% Similarity=0.198 Sum_probs=173.0
Q ss_pred eecccccccCCceeeeeeCCCc-------cceeccccccccccccccccccccccCCCCCC--------------CCCCC
Q 025070 20 SKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVAEETASSSSSS--------------VDTPS 78 (258)
Q Consensus 20 s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 78 (258)
......|.+||||.+|++-.|. ++|++|.-.+.+.-+..-++....+....... ...+.
T Consensus 128 DtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeA 207 (544)
T KOG0124|consen 128 DTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEA 207 (544)
T ss_pred HHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHH
Confidence 3345689999999999998887 77776665544443333222222221111100 12234
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
+.-.+|||..+.++++++||+..|+.||+|..|.+-+++..+..+||+|++|.+..+-..|+..||-..++|+.|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 56778999999999999999999999999999999999988889999999999999999999999999999999999876
Q ss_pred CCcchhhhhhh-------------------------------------------------------------hhhc----
Q 025070 159 EKPLVQVDLSL-------------------------------------------------------------LQAE---- 173 (258)
Q Consensus 159 ~~~~~~~~~~~-------------------------------------------------------------~~~~---- 173 (258)
.++....-.+. ..+.
T Consensus 288 vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~ 367 (544)
T KOG0124|consen 288 VTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITG 367 (544)
T ss_pred cCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceecc
Confidence 54432210000 0000
Q ss_pred --------------------------------------------------------c---------------CCCCCCCC
Q 025070 174 --------------------------------------------------------D---------------SNFVDSPY 182 (258)
Q Consensus 174 --------------------------------------------------------~---------------~~~~~~~~ 182 (258)
. ......++
T Consensus 368 vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~ 447 (544)
T KOG0124|consen 368 VTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQEST 447 (544)
T ss_pred CCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCc
Confidence 0 00011126
Q ss_pred eEEEcCC--CCCCCH---HHHHHHHhcCCCeEEEEEeeCCCCCCCcc----EEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 025070 183 KVYVGNL--AKTVTS---EMLKKCFSEKGQVLSAKVLRVPGTSKSSG----FGFVTFSSEEDAEAAISSLNNSLLEGQRI 253 (258)
Q Consensus 183 ~l~v~nl--~~~~~~---~~l~~~f~~~G~v~~~~i~~~~~~~~~~~----~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 253 (258)
.+.++|+ |.++++ .+|++.|.+||.|..+.|.....++.... -.||+|....++.+|.++|+|+.|+||++
T Consensus 448 VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~V 527 (544)
T KOG0124|consen 448 VIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKV 527 (544)
T ss_pred EEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCcee
Confidence 7788888 555554 68899999999999999987665443322 36999999999999999999999999998
Q ss_pred EEE
Q 025070 254 RVN 256 (258)
Q Consensus 254 ~v~ 256 (258)
..+
T Consensus 528 vAE 530 (544)
T KOG0124|consen 528 VAE 530 (544)
T ss_pred ehh
Confidence 653
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=6.5e-23 Score=166.64 Aligned_cols=169 Identities=27% Similarity=0.442 Sum_probs=151.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
...+|||++|+++++++.|++.|.+||+|.+|.+++|+.+++++||+||+|.+.+...+++ ....+.+.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 5689999999999999999999999999999999999999999999999999999999999 456788999999999987
Q ss_pred CcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 025070 160 KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A 239 (258)
+.......... ....+++|++||..++++++++.|.+||.|..+.++.|..++..++++||.|.+.+++.++
T Consensus 84 ~r~~~~~~~~~--------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 84 SREDQTKVGRH--------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred Ccccccccccc--------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 76543322111 1457899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCccCCeeeEEEeC
Q 025070 240 ISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 240 ~~~l~g~~~~g~~l~v~~a 258 (258)
+. ..-+.|.|+.+.|..|
T Consensus 156 ~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 156 TL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred cc-cceeeecCceeeEeec
Confidence 88 6788899999988765
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.9e-23 Score=157.59 Aligned_cols=136 Identities=37% Similarity=0.615 Sum_probs=116.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
...++|||+||+..+||+-|..+|++.|.|..++++.| .++|.|+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWA 48 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhccccc
Confidence 34589999999999999999999999999999999876 4455555
Q ss_pred CCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHH
Q 025070 159 EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~ 238 (258)
..+..+.. .....-.-++|+.|...++.++|++.|.+||+|.+++|++|..|++++||+||.|-+.++|+.
T Consensus 49 ~~p~nQsk---------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEn 119 (321)
T KOG0148|consen 49 TAPGNQSK---------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAEN 119 (321)
T ss_pred cCcccCCC---------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHH
Confidence 43311110 001112468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccCCeeeEEEeC
Q 025070 239 AISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 239 A~~~l~g~~~~g~~l~v~~a 258 (258)
|+..|||..|++|.|+-.||
T Consensus 120 AI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 120 AIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred HHHHhCCeeeccceeecccc
Confidence 99999999999999999997
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.85 E-value=8.1e-20 Score=138.56 Aligned_cols=172 Identities=22% Similarity=0.341 Sum_probs=143.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHH----HHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 79 EFARRVYIGNIPRNIDNDELTK----IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~----~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.+..+|||.||+..+..++|+. +|++||.|.+|.... +.+.+|-|||.|.+.+.|-.|++.|+|..+.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999988 999999999888754 677899999999999999999999999999999999
Q ss_pred EEecCCcchhhhhhh--------------------hhhcc----------------CCCCCCCCeEEEcCCCCCCCHHHH
Q 025070 155 VNITEKPLVQVDLSL--------------------LQAED----------------SNFVDSPYKVYVGNLAKTVTSEML 198 (258)
Q Consensus 155 v~~~~~~~~~~~~~~--------------------~~~~~----------------~~~~~~~~~l~v~nl~~~~~~~~l 198 (258)
+.++........... ..... ....++...+++.|||..++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 999866543221100 00000 122456678999999999999999
Q ss_pred HHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEEEeC
Q 025070 199 KKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE-GQRIRVNKA 258 (258)
Q Consensus 199 ~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 258 (258)
..+|.+|+....++++. ...+.|||+|.+...|..|...+.|..+. ...++|.+|
T Consensus 164 ~~lf~qf~g~keir~i~-----~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIP-----PRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHHhhCcccceeEecc-----CCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 99999999999999885 34578999999999999999999999887 888888876
No 38
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.85 E-value=5.5e-21 Score=159.88 Aligned_cols=150 Identities=22% Similarity=0.325 Sum_probs=116.6
Q ss_pred eccccceecccccccCCceeeeeeCCCc-------cceeccccccccccccc-cccccccccCCCC--CCCCCCCCCCce
Q 025070 14 QQNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTR-LFAVAEETASSSS--SSVDTPSEFARR 83 (258)
Q Consensus 14 ~~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~ 83 (258)
+.++....+...|+.||+|.+++++.|. ++|++|...+.+..++. +............ ..........++
T Consensus 116 p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~ 195 (346)
T TIGR01659 116 PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTN 195 (346)
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccce
Confidence 3344444455699999999999998875 79999999877777664 2222222211111 111122334678
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEecCCc
Q 025070 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG--REIKVNITEKP 161 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g--~~l~v~~~~~~ 161 (258)
|||+|||.++|+++|+++|++||.|..++++++..+++++|||||+|.+.++|++||+.||+..+.+ ++|.|.++...
T Consensus 196 lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 196 LYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred eEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999999999999999999999999999999899999999999999999999999999998865 78999988765
Q ss_pred ch
Q 025070 162 LV 163 (258)
Q Consensus 162 ~~ 163 (258)
..
T Consensus 276 ~~ 277 (346)
T TIGR01659 276 GK 277 (346)
T ss_pred cc
Confidence 43
No 39
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=5.9e-20 Score=134.48 Aligned_cols=160 Identities=26% Similarity=0.371 Sum_probs=130.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
..++.|||+|||.++-+.+|.++|.+||.|..|.+-..+ ...+||||+|++..+|+.||..-+|+.++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 456899999999999999999999999999999885432 23569999999999999999999999999999999998
Q ss_pred CCcchhhhhhh------------hhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEE
Q 025070 159 EKPLVQVDLSL------------LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFG 226 (258)
Q Consensus 159 ~~~~~~~~~~~------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~ 226 (258)
........... ..............+.|.+||++-+.+||+++..+.|.|+...+.+| +.+
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 66542211100 00001112223368999999999999999999999999999999975 368
Q ss_pred EEEeCCHHHHHHHHHHhcCCcc
Q 025070 227 FVTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 227 fV~f~~~~~A~~A~~~l~g~~~ 248 (258)
.|+|-..++..-|+.+|....+
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeehhhHHHHHHhhccccc
Confidence 9999999999999999987755
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.82 E-value=1.2e-18 Score=143.03 Aligned_cols=179 Identities=30% Similarity=0.395 Sum_probs=146.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhh-CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
.......|.+||.|||+++.+++|+++|.. -|+|+.|.++.|. .|+++|+|.|+|+++|.+++|++.||.+.+.||+|
T Consensus 38 gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l 116 (608)
T KOG4212|consen 38 GNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL 116 (608)
T ss_pred CCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence 344556677999999999999999999986 7899999999999 89999999999999999999999999999999999
Q ss_pred EEEecCCcchhhhh------------------------------------------------------------------
Q 025070 154 KVNITEKPLVQVDL------------------------------------------------------------------ 167 (258)
Q Consensus 154 ~v~~~~~~~~~~~~------------------------------------------------------------------ 167 (258)
.|+.....+....-
T Consensus 117 ~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~l 196 (608)
T KOG4212|consen 117 VVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNL 196 (608)
T ss_pred EEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhc
Confidence 99875432111000
Q ss_pred -----hhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 025070 168 -----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242 (258)
Q Consensus 168 -----~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~ 242 (258)
....+...-..+...+++|.||...+....|++.|.-.|.|+.+.+-.|++ |.++|++.++|.++.+|.+|+.+
T Consensus 197 fgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 197 FGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred ccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHh
Confidence 000001111233447899999999999999999999999999999999885 58899999999999999999999
Q ss_pred hcCCccCCeeeEE
Q 025070 243 LNNSLLEGQRIRV 255 (258)
Q Consensus 243 l~g~~~~g~~l~v 255 (258)
+++.-+..++..+
T Consensus 276 l~~~g~~~~~~~~ 288 (608)
T KOG4212|consen 276 LDRQGLFDRRMTV 288 (608)
T ss_pred hccCCCcccccee
Confidence 9976555555444
No 41
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.82 E-value=5.9e-19 Score=140.93 Aligned_cols=174 Identities=19% Similarity=0.324 Sum_probs=139.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCee--------EeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVE--------KAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
+..++.|||.|||.++|.+++.++|++||-|. .|++.++. .|..+|=|++.|...+++..|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45667899999999999999999999999775 58899998 6999999999999999999999999999999
Q ss_pred CeeEEEEecCCcchhhh----------------hhhh--------hhccCCCCCCCCeEEEcCCCC----CCC-------
Q 025070 150 GREIKVNITEKPLVQVD----------------LSLL--------QAEDSNFVDSPYKVYVGNLAK----TVT------- 194 (258)
Q Consensus 150 g~~l~v~~~~~~~~~~~----------------~~~~--------~~~~~~~~~~~~~l~v~nl~~----~~~------- 194 (258)
|+.|+|..|+-...... .... ...........++|.+.|+-. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999998743211100 0000 011233344557899999822 122
Q ss_pred HHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 195 ~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.++|++.+++||.|.++.|.- ..+.|.+-|.|.+.++|..|++.|+|+.++||.|..+
T Consensus 290 kedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~ 347 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTAS 347 (382)
T ss_pred HHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEE
Confidence 367888999999999998883 2577889999999999999999999999999999865
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.81 E-value=1.1e-18 Score=145.48 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=132.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
......|.+++||+++|+++|+++|+.+ .|+++.+.+. +|+..|-|||+|.+.+++++|+ +.+...+..|.|+|..
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEc
Confidence 3444679999999999999999999999 6777666554 7999999999999999999999 5688899999999998
Q ss_pred cCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeeCCCCCCCccEEEEEeCCHHHH
Q 025070 158 TEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLS-AKVLRVPGTSKSSGFGFVTFSSEEDA 236 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~~~~fV~f~~~~~A 236 (258)
+......... .............|.+++||+.++++||.++|+..-.|.. +.++.+. .+++.|-|||+|++.+.|
T Consensus 83 ~~~~e~d~~~---~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 83 AGGAEADWVM---RPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESA 158 (510)
T ss_pred cCCccccccc---cCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHH
Confidence 8655432111 1111111234468999999999999999999998855544 4445554 567899999999999999
Q ss_pred HHHHHHhcCCccCCeeeEE
Q 025070 237 EAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 237 ~~A~~~l~g~~~~g~~l~v 255 (258)
++|+. -|...|+-|-|.|
T Consensus 159 e~Al~-rhre~iGhRYIEv 176 (510)
T KOG4211|consen 159 EIALG-RHRENIGHRYIEV 176 (510)
T ss_pred HHHHH-HHHHhhccceEEe
Confidence 99998 4666677666655
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=4.3e-19 Score=130.62 Aligned_cols=85 Identities=33% Similarity=0.553 Sum_probs=79.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
....++|||+|||+++++++|+++|++||.|.++.++.|..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 025070 158 TEKPL 162 (258)
Q Consensus 158 ~~~~~ 162 (258)
+....
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 86543
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=2.8e-18 Score=126.33 Aligned_cols=80 Identities=39% Similarity=0.589 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||.|||+.+++++|+++|++||.|.++.++.++.++.+++||||+|.+.++|.+|++.||+..|+|+.|+|+||
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999986
No 45
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=8.4e-18 Score=143.46 Aligned_cols=181 Identities=17% Similarity=0.297 Sum_probs=142.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.......++|++||..+++.+++++...||++...+++.+..+|.++||||.+|-+......|+..|||..++++.|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 33455689999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCcchhhhhhhh----------hhccCCCCCCCCeEEEcCC--CCCCCH--------HHHHHHHhcCCCeEEEEEeeC
Q 025070 157 ITEKPLVQVDLSLL----------QAEDSNFVDSPYKVYVGNL--AKTVTS--------EMLKKCFSEKGQVLSAKVLRV 216 (258)
Q Consensus 157 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~v~nl--~~~~~~--------~~l~~~f~~~G~v~~~~i~~~ 216 (258)
.+............ .........+...|.+.|+ |..+.+ |+++..|.+||.|..|.+.++
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 87554433222111 0000112223344455454 112111 567888999999999999986
Q ss_pred ---CCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 217 ---PGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 217 ---~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.......|..||+|.+.+++.+|.++|+|++|+||.|..+|
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 23345567899999999999999999999999999999887
No 46
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.77 E-value=2.6e-17 Score=124.16 Aligned_cols=169 Identities=17% Similarity=0.232 Sum_probs=128.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEe-eeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC---Ce
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI-YDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG---GR 151 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~-~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~---g~ 151 (258)
.....-|+|||.+||.++...+|..+|..|.-.+.+.+- ++......+.+||+.|.+..+|+.|+.+|||..++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 344456899999999999999999999999777666653 33333445679999999999999999999999985 89
Q ss_pred eEEEEecCCcchhhhhhhhh-----------------h--------------------c---------------------
Q 025070 152 EIKVNITEKPLVQVDLSLLQ-----------------A--------------------E--------------------- 173 (258)
Q Consensus 152 ~l~v~~~~~~~~~~~~~~~~-----------------~--------------------~--------------------- 173 (258)
.|++++++...+........ . .
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 99999886554432210000 0 0
Q ss_pred --------------cCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 025070 174 --------------DSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239 (258)
Q Consensus 174 --------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A 239 (258)
.........+|||.||..++++++|+++|+.|.....++|... .....||++|++.+.|..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDA 264 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHH
Confidence 0000001168999999999999999999999988877776642 2346799999999999999
Q ss_pred HHHhcCCcc
Q 025070 240 ISSLNNSLL 248 (258)
Q Consensus 240 ~~~l~g~~~ 248 (258)
+..|.|..+
T Consensus 265 m~~lqg~~~ 273 (284)
T KOG1457|consen 265 MNHLQGNLL 273 (284)
T ss_pred HHHhhccee
Confidence 999999876
No 47
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=2e-17 Score=143.41 Aligned_cols=176 Identities=24% Similarity=0.335 Sum_probs=137.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....+.+.|+|||..+..++|..+|..||.|..+.+++. |. -|+|+|.+..+|++|++.|....+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 4456688999999999999999999999999999966522 22 59999999999999999999999988888888
Q ss_pred ecCCcchhhhh-----------h-------------hhhhccC------------CCCCCCCeEEEcCCCCCCCHHHHHH
Q 025070 157 ITEKPLVQVDL-----------S-------------LLQAEDS------------NFVDSPYKVYVGNLAKTVTSEMLKK 200 (258)
Q Consensus 157 ~~~~~~~~~~~-----------~-------------~~~~~~~------------~~~~~~~~l~v~nl~~~~~~~~l~~ 200 (258)
|+......... . .....+. ......++||+.|+++.++.+++..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 76332221000 0 0000000 0011124499999999999999999
Q ss_pred HHhcCCCeEEEEEeeCCCC---CCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 201 CFSEKGQVLSAKVLRVPGT---SKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 201 ~f~~~G~v~~~~i~~~~~~---~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.|...|.|.++.|.+.+.. -.+.|||||+|.++++|..|++.|+|+.++|+.|.|+++
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 9999999999988865421 123499999999999999999999999999999999874
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=1.7e-17 Score=107.46 Aligned_cols=70 Identities=36% Similarity=0.778 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
|||+|||.++|+++|+++|+.||.+..+.+..+. ++..+|+|||+|.+.++|++|++.++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS-SGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET-TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc-cccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999984 899999999999999999999999999999999985
No 49
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.2e-17 Score=128.03 Aligned_cols=160 Identities=27% Similarity=0.432 Sum_probs=129.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
..+||++||..+.+.+|.++|..||.+.++.+. .||+||+|.+..+|..|+..+|+..+.|-.+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999884 358999999999999999999999999888888888643
Q ss_pred chhhhhhhh------hhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHH
Q 025070 162 LVQVDLSLL------QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235 (258)
Q Consensus 162 ~~~~~~~~~------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~ 235 (258)
......+.. ...-.......+.+.+.+++..+...+|.+.|.++|.+..... ..+.+||+|++.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 221100000 1111122344577889999999999999999999999854443 24679999999999
Q ss_pred HHHHHHHhcCCccCCeeeEEEe
Q 025070 236 AEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 236 A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
|.+|+..|+|..+.|+.|.+.+
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhhcchhccchhhcCceeeecc
Confidence 9999999999999999998754
No 50
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.72 E-value=3.6e-18 Score=124.94 Aligned_cols=154 Identities=17% Similarity=0.283 Sum_probs=127.0
Q ss_pred eeeeeeccccceecccccccCCceeeeeeCCCc-------cceeccccccccccccccccccccccCCCCC----CCCCC
Q 025070 9 SLILSQQNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVAEETASSSSS----SVDTP 77 (258)
Q Consensus 9 ~~~~~~~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 77 (258)
+...-+..+..+.++..|-++|||+.+++|+|+ |+|.+|.+++.++.+.+++.....-..+... .....
T Consensus 13 yvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~n 92 (203)
T KOG0131|consen 13 YVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKN 92 (203)
T ss_pred EEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccccccc
Confidence 344445566667788899999999999999999 9999999999999998887654443333221 12233
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeE-eEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK-AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~-~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....+|||+||.+.+++..|.+.|+.||.+.. -+++++..+|.++|||||.|.+.+.+.+|+..++|..+..+++.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 345578999999999999999999999997754 5788999889999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 025070 157 ITEKPL 162 (258)
Q Consensus 157 ~~~~~~ 162 (258)
++....
T Consensus 173 ya~k~~ 178 (203)
T KOG0131|consen 173 YAFKKD 178 (203)
T ss_pred EEEecC
Confidence 885443
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.72 E-value=4e-16 Score=127.35 Aligned_cols=169 Identities=22% Similarity=0.339 Sum_probs=136.7
Q ss_pred CceEEEcCC-CCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 81 ARRVYIGNI-PRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 81 ~~~l~V~nl-~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
+..|-|.|| +..+|.+.|.-+|.-||.|.+|+|+.++. -.|+|+|.+...|+.|++.|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 578899999 45679999999999999999999998762 479999999999999999999999999999999986
Q ss_pred Ccchhhhhhhhhh---------------------ccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC
Q 025070 160 KPLVQVDLSLLQA---------------------EDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG 218 (258)
Q Consensus 160 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~ 218 (258)
............+ .-....++..+|++.|+|.++++|++++.|...|...+....-
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 5533322111000 0111235667999999999999999999999988765544442
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEEEeC
Q 025070 219 TSKSSGFGFVTFSSEEDAEAAISSLNNSLLE-GQRIRVNKA 258 (258)
Q Consensus 219 ~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 258 (258)
++.+.++++.+++.++|..|+..++...++ +..++|+|.
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 356789999999999999999999999987 559999873
No 52
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5e-17 Score=124.27 Aligned_cols=83 Identities=25% Similarity=0.432 Sum_probs=79.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
....+|.|.||+.++++++|+++|.+||.|..+.+.+|..+|.++|||||.|.++++|++||..|||+-+++-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 025070 159 EKP 161 (258)
Q Consensus 159 ~~~ 161 (258)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 765
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=125.35 Aligned_cols=161 Identities=26% Similarity=0.464 Sum_probs=121.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCC
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 160 (258)
.++|||+|||.++|+++|+++|..||.+..+.+..+..+|.++|+|||.|.+.++|..|++.+++..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999987999999999999999999999999999999999999999643
Q ss_pred ----cchhhh--h----hhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEe
Q 025070 161 ----PLVQVD--L----SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTF 230 (258)
Q Consensus 161 ----~~~~~~--~----~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f 230 (258)
...... . ................+++.+++..+...++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111110 0 000112223344557889999999999999999999999997766665443222333333444
Q ss_pred CCHHHHHHHHH
Q 025070 231 SSEEDAEAAIS 241 (258)
Q Consensus 231 ~~~~~A~~A~~ 241 (258)
.....+.....
T Consensus 275 ~~~~~~~~~~~ 285 (306)
T COG0724 275 EASKDALESNS 285 (306)
T ss_pred hHHHhhhhhhc
Confidence 44444433333
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=3.5e-16 Score=101.25 Aligned_cols=70 Identities=49% Similarity=0.775 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 184 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
|||+|||+.+++++|+++|++||.+..+.+..+ .++..+++|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5778999999999999999999999999999999986
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=4.1e-16 Score=101.00 Aligned_cols=70 Identities=43% Similarity=0.734 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
|||+|||+++++++|+++|+.+|.|..+.+..+.. |..+|+|||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999985 99999999999999999999999998999999875
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.3e-16 Score=119.19 Aligned_cols=80 Identities=33% Similarity=0.419 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
....+|.|.||+.++++++|+++|.+||.|..+.+.+|++||.++|||||.|.+.++|.+|+..|||.-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999996
No 57
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=4.5e-16 Score=107.42 Aligned_cols=84 Identities=18% Similarity=0.366 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
...+.+|||+||+..++|++|.++|+.+|+|..|.|-.|..+..+-|||||+|.+.++|+.|++-+++..+.+++|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35668999999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred cCCc
Q 025070 158 TEKP 161 (258)
Q Consensus 158 ~~~~ 161 (258)
.-.-
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 7443
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.63 E-value=2.9e-16 Score=122.98 Aligned_cols=133 Identities=22% Similarity=0.371 Sum_probs=116.3
Q ss_pred cccccccCCceeeeeeCCCccceeccccccccccccc-cccccccccCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHH
Q 025070 22 THFTFQSRQPILQIRFPKLSYSLHNLKTASIEDSTTR-LFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDNDELTK 100 (258)
Q Consensus 22 ~~~~F~~~G~i~~i~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~L~~ 100 (258)
....|+++|.|+.+.+.+. |+|+-+.....+..+++ +......+......+.....+.+++|+|+||.+.|+.++|+.
T Consensus 19 lr~lFe~ygkVlECDIvKN-YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa 97 (346)
T KOG0109|consen 19 LRSLFEQYGKVLECDIVKN-YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRA 97 (346)
T ss_pred HHHHHHhhCceEeeeeecc-cceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhh
Confidence 4457999999999999999 88888888877777776 777777776666666666678889999999999999999999
Q ss_pred HHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcch
Q 025070 101 IVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV 163 (258)
Q Consensus 101 ~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~ 163 (258)
.|++||+|.+|.+++| |+||.|...++|..|++.|++.++.|++++|..+.....
T Consensus 98 ~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 98 KFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred hhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 9999999999999765 899999999999999999999999999999999866543
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.3e-15 Score=118.54 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=71.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCC
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 160 (258)
.++|||+|||+++|+++|+++|+.||.|.++.|+.+.. .+|||||+|++.++|+.|+ .|+|..+.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999988763 5789999999999999999 6999999999999999865
Q ss_pred cc
Q 025070 161 PL 162 (258)
Q Consensus 161 ~~ 162 (258)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.9e-15 Score=120.26 Aligned_cols=84 Identities=29% Similarity=0.529 Sum_probs=76.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......++|+|.|||+..-+.||+.+|.+||.|.+|.|+.+. .-+|||+||.|++.+||++|-++|||..+.||+|+|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 333455789999999999999999999999999999999885 347999999999999999999999999999999999
Q ss_pred EecCCc
Q 025070 156 NITEKP 161 (258)
Q Consensus 156 ~~~~~~ 161 (258)
..+...
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998655
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=3.3e-15 Score=96.75 Aligned_cols=70 Identities=40% Similarity=0.675 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 184 VYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 184 l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
|+|+|||+.+++++|+++|+.||.|..+.+...+. +..+++|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 68999999999999999999999999999999876 88999999999999999999999999999999885
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.4e-15 Score=115.91 Aligned_cols=82 Identities=24% Similarity=0.471 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
+..-++|||+||++.+..+.|+++|++||+|.+..++.|..+|++|||+||.|++.++|.+|++. .+-.|+||+..+++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34557899999999999999999999999999999999999999999999999999999999964 45568999999998
Q ss_pred cCC
Q 025070 158 TEK 160 (258)
Q Consensus 158 ~~~ 160 (258)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 754
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.61 E-value=1.7e-15 Score=113.15 Aligned_cols=84 Identities=26% Similarity=0.489 Sum_probs=79.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
.+......|.|-||-..++.++|+.+|++||.|.+|.|+.|..++.++|||||.|....||+.|+++|+|.+++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q 025070 156 NITE 159 (258)
Q Consensus 156 ~~~~ 159 (258)
.++.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 8874
No 64
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.1e-15 Score=115.04 Aligned_cols=76 Identities=34% Similarity=0.598 Sum_probs=70.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|||+||+|.+..+.|++.|++||+|.++.|+.|+.+|+++|||||+|++.++|.+|++. -.-.|+||+..+.+|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 6899999999999999999999999999999999999999999999999999999999993 344789999888765
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.2e-14 Score=96.75 Aligned_cols=87 Identities=23% Similarity=0.386 Sum_probs=77.3
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
...++..++.|||+|||+++|.++..++|..||.|..+++-.. ...+|.|||.|++..+|.+|++.|+|..+.++.+
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 3456677789999999999999999999999999999999554 4578999999999999999999999999999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.+-.+...
T Consensus 88 ~vlyyq~~~~ 97 (124)
T KOG0114|consen 88 VVLYYQPEDA 97 (124)
T ss_pred EEEecCHHHH
Confidence 9998766543
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=3.9e-15 Score=118.51 Aligned_cols=82 Identities=33% Similarity=0.534 Sum_probs=73.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 175 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
.......++|+|.|||....+.||+..|++||.|.+|.|+-.. ..++|||||+|++.++|.+|..+|||+.+.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3344566899999999999999999999999999999998644 25789999999999999999999999999999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|..|
T Consensus 168 Vn~A 171 (376)
T KOG0125|consen 168 VNNA 171 (376)
T ss_pred Eecc
Confidence 9865
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.59 E-value=8.2e-14 Score=114.96 Aligned_cols=79 Identities=23% Similarity=0.406 Sum_probs=68.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
++....+||.||...+..+.|++.|.--|.|+.+.+-.|+ -|.++|+|.++|.++-.|-.||..+++.-+.+++..+..
T Consensus 212 pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 212 PPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred CCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 3445679999999999999999999999999999999998 789999999999999999999998887665555555544
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.3e-14 Score=114.35 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.++|||+|||+.+++++|+++|+.||.|.++.++.++ ..+|+|||+|+++++|..|+. |||..|+|+.|+|.+|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEec
Confidence 4789999999999999999999999999999999876 357999999999999999996 9999999999999875
No 69
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.59 E-value=6e-15 Score=119.69 Aligned_cols=174 Identities=22% Similarity=0.226 Sum_probs=132.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh----CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQE----HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~----~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
...-.|.+++||+++++.++.++|.. -|..+.+.+++.. +|+..|-|||.|..+++|+.|+.+ |...++.|.|+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 34556889999999999999999964 2356678777777 899999999999999999999964 77778888888
Q ss_pred EEecCCcchhhhhhhhh-----------------hccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEE--EEEe
Q 025070 155 VNITEKPLVQVDLSLLQ-----------------AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQ-VLS--AKVL 214 (258)
Q Consensus 155 v~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~--~~i~ 214 (258)
+..+...+......... ...........+|.+++||+..+.|+|.++|..|.. |.. +.++
T Consensus 237 lFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv 316 (508)
T KOG1365|consen 237 LFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMV 316 (508)
T ss_pred HHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEE
Confidence 87665443322211111 011111223468999999999999999999998854 222 4555
Q ss_pred eCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 215 RVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 215 ~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
. +..|.+.|-|||+|.+.+.|..|..+.+++...+|-|.|
T Consensus 317 ~-N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 317 L-NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred E-cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 4 446889999999999999999999998888777887765
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=5e-15 Score=107.91 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
...++|||+||+.++++.||...|..||++..+.+-.. +.|||||+|++..||+.|+..|+|..+.|..+.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34688999999999999999999999999999999664 4689999999999999999999999999999999998
Q ss_pred CCcch
Q 025070 159 EKPLV 163 (258)
Q Consensus 159 ~~~~~ 163 (258)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 65543
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=5.2e-15 Score=110.57 Aligned_cols=78 Identities=31% Similarity=0.505 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
-..|.|.||-+.++.++|+..|++||.|-+|.|..|..|+.++|||||.|....+|+.|+++|+|..++|+.|.|++|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999999986
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=3.9e-16 Score=114.24 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=79.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
-..+.-|||+|||+++||.+|.-+|++||+|.+|.+++|..+|+++||||+.|++..+...|+..|||..+.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCcc
Q 025070 158 TEKPL 162 (258)
Q Consensus 158 ~~~~~ 162 (258)
.....
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 64443
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.7e-14 Score=112.43 Aligned_cols=83 Identities=20% Similarity=0.461 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
.+-+||||+-|+.+++|..|+..|+.||+|..|.|+.|..+|+++|||||+|+++.+-..|.+..+|+.|+|+.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCc
Q 025070 159 EKP 161 (258)
Q Consensus 159 ~~~ 161 (258)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 443
No 74
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1e-14 Score=101.73 Aligned_cols=86 Identities=20% Similarity=0.369 Sum_probs=79.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
........|||.++...+|+++|.+.|..||+|..+.+-.|..+|..+|||+|+|++.++|+.|+..+||..+.|+++.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 33445578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCc
Q 025070 156 NITEKP 161 (258)
Q Consensus 156 ~~~~~~ 161 (258)
.|+-..
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 998443
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=3.4e-14 Score=91.87 Aligned_cols=71 Identities=37% Similarity=0.789 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
+|+|+|||..+++++|+++|+.||.+..+.+..+. +.++|+|||+|.+.++|++|++.+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998876 778899999999999999999999999999999876
No 76
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.56 E-value=1.1e-13 Score=115.94 Aligned_cols=221 Identities=17% Similarity=0.166 Sum_probs=151.9
Q ss_pred ccccCCceeeeeeCCCc-----cceecccccccccccccccccccccc------------C-CCCCCCCCCCCCCceEEE
Q 025070 25 TFQSRQPILQIRFPKLS-----YSLHNLKTASIEDSTTRLFAVAEETA------------S-SSSSSVDTPSEFARRVYI 86 (258)
Q Consensus 25 ~F~~~G~i~~i~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~l~V 86 (258)
+|+.|+ |.++.+++.. -|+++|.+++-...+.+......... . ...............|.+
T Consensus 30 Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRL 108 (510)
T KOG4211|consen 30 FFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRL 108 (510)
T ss_pred HHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEe
Confidence 788887 6778888773 78888888766655544322211110 0 000111122246678999
Q ss_pred cCCCCCCCHHHHHHHHhhCCCeeE-eEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchhh
Q 025070 87 GNIPRNIDNDELTKIVQEHGAVEK-AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV 165 (258)
Q Consensus 87 ~nl~~~~t~~~L~~~F~~~G~i~~-~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~ 165 (258)
++||+.||++||.++|+..-.+.. +.++.++ .+++.|-|||+|++.++|++|+. -|...++.|.|+|..+.......
T Consensus 109 RGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 109 RGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred cCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHh
Confidence 999999999999999999866655 4455555 78899999999999999999995 58888999999997653221110
Q ss_pred hh----------hh-----------------------------------------hhh----------------------
Q 025070 166 DL----------SL-----------------------------------------LQA---------------------- 172 (258)
Q Consensus 166 ~~----------~~-----------------------------------------~~~---------------------- 172 (258)
.. .. ..+
T Consensus 187 ~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~ 266 (510)
T KOG4211|consen 187 AAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPH 266 (510)
T ss_pred hccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcc
Confidence 00 00 000
Q ss_pred ------ccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 025070 173 ------EDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246 (258)
Q Consensus 173 ------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~ 246 (258)
...........++.++||...++.++.++|... ....+.|-..+ +|...|-|+|+|.+.++|..|+-+ ++.
T Consensus 267 ~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig~-dGr~TGEAdveF~t~edav~Amsk-d~a 343 (510)
T KOG4211|consen 267 RQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIGP-DGRATGEADVEFATGEDAVGAMGK-DGA 343 (510)
T ss_pred cCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeCC-CCccCCcceeecccchhhHhhhcc-CCc
Confidence 000001111678999999999999999999986 44467777755 788999999999999999999873 444
Q ss_pred ccCCe
Q 025070 247 LLEGQ 251 (258)
Q Consensus 247 ~~~g~ 251 (258)
.+..+
T Consensus 344 nm~hr 348 (510)
T KOG4211|consen 344 NMGHR 348 (510)
T ss_pred ccCcc
Confidence 44444
No 77
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.56 E-value=3.7e-14 Score=109.98 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
...+|||+||++.+|+++|+++|+.||.|.+|+|++|. ..+|+|||+|+++++|+.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 34789999999999999999999999999999999874 45579999999999999999 799999999999998875
Q ss_pred Ccc
Q 025070 160 KPL 162 (258)
Q Consensus 160 ~~~ 162 (258)
...
T Consensus 80 ~y~ 82 (243)
T PLN03121 80 QYE 82 (243)
T ss_pred ccc
Confidence 443
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=2.6e-14 Score=119.65 Aligned_cols=81 Identities=20% Similarity=0.403 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCccCCeeEEEE
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTV--EDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~--~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
....+||||||++++++++|+.+|..||.|.++.|++. +| ||||||+|... .++++||..|||..|.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 44578999999999999999999999999999999944 66 89999999987 78999999999999999999999
Q ss_pred ecCCcch
Q 025070 157 ITEKPLV 163 (258)
Q Consensus 157 ~~~~~~~ 163 (258)
.+++.-.
T Consensus 84 KAKP~YL 90 (759)
T PLN03213 84 KAKEHYL 90 (759)
T ss_pred eccHHHH
Confidence 9976533
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.7e-14 Score=99.66 Aligned_cols=79 Identities=29% Similarity=0.403 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..+++|||+||...+++|+|.++|+++|.|..|.+-.|+.+..+.|+|||+|-+.++|..|++-++|+.++.+.|++.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3458999999999999999999999999999999989999999999999999999999999999999999999999987
No 80
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.5e-13 Score=113.64 Aligned_cols=163 Identities=20% Similarity=0.344 Sum_probs=124.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCC-CC--Cccc---EEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKY-TG--RSRR---FAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~-~~--~~~g---~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
....-.++|||++||.+++|++|...|..||.+ .+.++.... .+ ..+| |+|+-|+++..++..+.+... .
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~ 329 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G 329 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---c
Confidence 444667899999999999999999999999988 466653221 11 2466 999999999999988876533 3
Q ss_pred CeeEEEEecCCcchhh---------hhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHh-cCCCeEEEEEeeCCCC
Q 025070 150 GREIKVNITEKPLVQV---------DLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS-EKGQVLSAKVLRVPGT 219 (258)
Q Consensus 150 g~~l~v~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~i~~~~~~ 219 (258)
+....++.+.+..... .....-.......++.+||||++||..++.++|..+|+ -||.|..+.|-.|++-
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 3344443332222211 11111222445567779999999999999999999999 5999999999999999
Q ss_pred CCCccEEEEEeCCHHHHHHHHHH
Q 025070 220 SKSSGFGFVTFSSEEDAEAAISS 242 (258)
Q Consensus 220 ~~~~~~~fV~f~~~~~A~~A~~~ 242 (258)
+.++|-|-|+|.+..+-.+|+.+
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhh
Confidence 99999999999999999999973
No 81
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=6.8e-14 Score=90.08 Aligned_cols=70 Identities=40% Similarity=0.766 Sum_probs=66.2
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 86 V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
|+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..+++..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999999998877899999999999999999999999999999999876
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=1.2e-13 Score=89.22 Aligned_cols=72 Identities=49% Similarity=0.708 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 183 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
+|+|+|||..+++++|+++|.+||.+..+.+..++ +.++++|||+|.+.++|.+|+..++|..++|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988766 6788999999999999999999999999999999874
No 83
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=4.9e-14 Score=102.80 Aligned_cols=72 Identities=42% Similarity=0.610 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.++|||+||+..+++.||...|..||.+.+++|.. .+.|||||+|+++.+|..|+..|+|+.|.|..|+|++
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 47899999999999999999999999999999998 4569999999999999999999999999999999986
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.51 E-value=1.4e-13 Score=88.66 Aligned_cols=71 Identities=46% Similarity=0.715 Sum_probs=66.9
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 186 VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 186 v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
|.|||..+++++|+++|++||.|..+.+..++.++.++++|||+|.+.++|.+|+..+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999988778899999999999999999999999999999999874
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.50 E-value=3.7e-13 Score=87.38 Aligned_cols=74 Identities=35% Similarity=0.753 Sum_probs=68.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
+|+|+|||..+++++|+++|+.+|.|..+.+..+. .+..+|+|||+|.+.++|+.|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887 447789999999999999999999999999999998863
No 86
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.2e-14 Score=108.20 Aligned_cols=87 Identities=25% Similarity=0.474 Sum_probs=81.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|||++|..++|+.-|..-|-+||.|.+|+++.|..+++.||||||+|.-.|||..||..||+.++.||.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcch
Q 025070 157 ITEKPLV 163 (258)
Q Consensus 157 ~~~~~~~ 163 (258)
++.+...
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 9977543
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=8e-14 Score=97.24 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
......|+|+++.+.+++++|.+.|..||.|+.+.+-.|..||..+|||.|+|++.+.|..|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 149 ~ 149 (170)
T KOG0130|consen 149 C 149 (170)
T ss_pred E
Confidence 6
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.3e-13 Score=118.06 Aligned_cols=177 Identities=23% Similarity=0.457 Sum_probs=145.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhC-----------C-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEH-----------G-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~-----------G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~ 142 (258)
.......+.++|+++|+.++++....+|..- | .+..+.+-. .+.+||++|.+.++|..|+ .
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~-~ 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAM-A 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhh-c
Confidence 3444677889999999999999999999863 2 355555533 4569999999999999999 7
Q ss_pred hCCCccCCeeEEEEecCCcchhhhhh---------hhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEE
Q 025070 143 LNGTEIGGREIKVNITEKPLVQVDLS---------LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKV 213 (258)
Q Consensus 143 l~~~~~~g~~l~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i 213 (258)
+++..+.|..+.+............. ...............++|.+||..+++.+++++...||.+....+
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l 321 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL 321 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhee
Confidence 89999999999987654443322111 111223334455688999999999999999999999999999999
Q ss_pred eeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 214 LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 214 ~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+++..+|.++||||.+|.++.....|+..|||..++++.|.|+.|
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 999999999999999999999999999999999999999999876
No 89
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.47 E-value=1.6e-13 Score=116.86 Aligned_cols=82 Identities=32% Similarity=0.569 Sum_probs=78.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
+.|||||+|+++++++|.++|+..|.|.+++++.|..+|+++||||++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred ch
Q 025070 162 LV 163 (258)
Q Consensus 162 ~~ 163 (258)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 90
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.47 E-value=4.9e-12 Score=102.66 Aligned_cols=168 Identities=23% Similarity=0.234 Sum_probs=132.0
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 77 PSEFARRVYIGNIPR-NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~-~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
...+...++|.+|+. .++-+.|.++|..||.|+.|++++.. .|.|.|++.+..+.++|+.-||+..+.|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 335667899999955 57899999999999999999998876 368999999999999999999999999999999
Q ss_pred EecCCcchhhhh-----------------------hhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEE
Q 025070 156 NITEKPLVQVDL-----------------------SLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQ-VLSA 211 (258)
Q Consensus 156 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~ 211 (258)
+.++........ ...+........+++.|+..|-|..+||+.|..+|...+. ..++
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~sv 437 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSV 437 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceE
Confidence 988654222110 1122223333556789999999999999999999998653 3445
Q ss_pred EEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 025070 212 KVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251 (258)
Q Consensus 212 ~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~ 251 (258)
++...+ .....-+.++|++.++|..|+.++|...+.+.
T Consensus 438 kvFp~k--serSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 438 KVFPLK--SERSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred Eeeccc--ccccccceeeeehHHHHHHHHHHhccccccCC
Confidence 555433 23344589999999999999999999988654
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=2.8e-13 Score=113.57 Aligned_cols=75 Identities=27% Similarity=0.450 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCH--HHHHHHHHHhcCCccCCeeeEEEe
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE--EDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~--~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
...+|||+||++.+++++|+..|..||.|..+.|+ +++| +|||||+|.+. .++.+|+..|||..+.|+.|+|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34689999999999999999999999999999999 4456 89999999987 789999999999999999999997
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 85 A 85 (759)
T PLN03213 85 A 85 (759)
T ss_pred c
Confidence 6
No 92
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.47 E-value=3.2e-13 Score=83.23 Aligned_cols=56 Identities=41% Similarity=0.633 Sum_probs=50.7
Q ss_pred HHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 198 LKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 198 l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
|+++|++||.|..+.+.... +++|||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998532 589999999999999999999999999999999997
No 93
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.47 E-value=1.3e-12 Score=106.05 Aligned_cols=164 Identities=17% Similarity=0.222 Sum_probs=127.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH--hCCCccCCeeEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK--LNGTEIGGREIK 154 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~--l~~~~~~g~~l~ 154 (258)
...++..|+|++|-..+++.+|.+-++.||+|..+.++... ..|.|+|++.+.|..++.- -+...+.|+.-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 34556789999999999999999999999999888887654 4799999999999998842 355667888888
Q ss_pred EEecCCcchhhhhhhhhhccCCCCCCCCeEE--EcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCC
Q 025070 155 VNITEKPLVQVDLSLLQAEDSNFVDSPYKVY--VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS 232 (258)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~ 232 (258)
+.++..+..... . .........|. |-|--+.+|.+.|..++.+.|+|..|.|++. .--.|.|+|++
T Consensus 101 ~NyStsq~i~R~------g-~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFds 168 (494)
T KOG1456|consen 101 FNYSTSQCIERP------G-DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDS 168 (494)
T ss_pred cccchhhhhccC------C-CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeech
Confidence 887754432211 1 11112223343 4455568999999999999999999999973 22369999999
Q ss_pred HHHHHHHHHHhcCCcc--CCeeeEEEeC
Q 025070 233 EEDAEAAISSLNNSLL--EGQRIRVNKA 258 (258)
Q Consensus 233 ~~~A~~A~~~l~g~~~--~g~~l~v~~a 258 (258)
.+.|.+|...|||..| +-+.|+|+||
T Consensus 169 v~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 169 VEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred hHHHHHHHhhcccccccccceeEEEEec
Confidence 9999999999999987 4679999997
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=5.2e-13 Score=88.93 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.+.|||+|||..+|.|+..++|.+||.|..|+|-..+ ..+|.|||.|++..+|.+|++.|+|..+.++-+.|-|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3679999999999999999999999999999998755 5689999999999999999999999999999998865
No 95
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=7.7e-15 Score=107.49 Aligned_cols=78 Identities=27% Similarity=0.494 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.+.-|||+|||+.+|+.||...|++||.|..|.+++|..||+++||||+.|++..+...|+.-|||..|.||.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 346799999999999999999999999999999999999999999999999999999999999999999999999963
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=5.8e-13 Score=103.42 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
...+|+|+||++.+++++|+++|+.||.|.++.++++. ...++|||+|+++++|..|+. |+|..|.|+.|.|.-
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 34789999999999999999999999999999999875 456899999999999999996 999999999999864
No 97
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3.4e-13 Score=106.28 Aligned_cols=79 Identities=25% Similarity=0.455 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.+-++|||.-|+..+++.+|+..|+.||.|+.|.++.+..||+++|||||+|++..+...|.+..+|.+|+|+.|.|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4558999999999999999999999999999999999999999999999999999999999999999999999998865
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=1.1e-12 Score=85.20 Aligned_cols=74 Identities=46% Similarity=0.690 Sum_probs=68.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 183 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ .++++|||+|.+.++|..|++.+++..++|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4789999999999999999999999999999987644 6689999999999999999999999999999999975
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=3.5e-13 Score=114.77 Aligned_cols=77 Identities=42% Similarity=0.612 Sum_probs=75.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+.+||+|+|+++++++|.++|+..|.|.+++++.|+++|..+||||++|.+.++|.+|++.|||..++||.|+|.||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999996
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=9.2e-13 Score=85.01 Aligned_cols=62 Identities=26% Similarity=0.378 Sum_probs=55.5
Q ss_pred HHHHHHHHh----cCCCeEEEE-EeeCCCC--CCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 195 SEMLKKCFS----EKGQVLSAK-VLRVPGT--SKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 195 ~~~l~~~f~----~~G~v~~~~-i~~~~~~--~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
+++|+++|+ .||.|.++. ++.++.+ +.++|+|||+|.+.++|.+|+..|||+.++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888887 999999995 7777766 8899999999999999999999999999999999874
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=1.4e-12 Score=80.33 Aligned_cols=56 Identities=43% Similarity=0.691 Sum_probs=50.5
Q ss_pred HHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 98 LTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 98 L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
|+++|++||+|..+.+..+. +++|||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999996654 589999999999999999999999999999999875
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.41 E-value=1.8e-12 Score=83.69 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=55.1
Q ss_pred HHHHHHHHh----hCCCeeEeE-EeeeCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 95 NDELTKIVQ----EHGAVEKAE-VIYDKYT--GRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 95 ~~~L~~~F~----~~G~i~~~~-~~~~~~~--~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
+++|+++|+ .||.|.++. ++.++.+ |.++|+|||+|.+.++|++|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999996 6666656 889999999999999999999999999999999876
No 103
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.40 E-value=1.2e-11 Score=101.46 Aligned_cols=166 Identities=22% Similarity=0.276 Sum_probs=125.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC--CeeEEEEecCC
Q 025070 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG--GREIKVNITEK 160 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~--g~~l~v~~~~~ 160 (258)
.+.|.|+-.-++.+-|..+|++||.|..|...... .| =-|+|+|.+.+.|+.|-..|+|..+. -+.|+|.++..
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn-n~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN-NG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc-cc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 46789999999999999999999999888776544 21 14999999999999999999998873 46777766532
Q ss_pred cchh----------h-----hhh--------------------------------hhhhccCCCCCC--CCeEEEcCCC-
Q 025070 161 PLVQ----------V-----DLS--------------------------------LLQAEDSNFVDS--PYKVYVGNLA- 190 (258)
Q Consensus 161 ~~~~----------~-----~~~--------------------------------~~~~~~~~~~~~--~~~l~v~nl~- 190 (258)
..-. - ... .....+...... ...|.|.|+.
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 1000 0 000 000000011111 3567777775
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 191 ~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..+|.+.|..+|.-||.|.+|+|+..+ +..|.|.|.+...|..|+..|+|..+.|+.|+|.+
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 468999999999999999999999743 35699999999999999999999999999999986
No 104
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=8.7e-13 Score=97.10 Aligned_cols=76 Identities=28% Similarity=0.477 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..+.|||.|||..+.+.+|.++|.+||.|..|.+...+ ....||||+|+++.+|..|+..-+|..++|++|+|+||
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988755 45689999999999999999999999999999999986
No 105
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.8e-13 Score=101.63 Aligned_cols=79 Identities=41% Similarity=0.573 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..++|||++|-..+++.-|...|-+||.|..|.++.|-++++.||+|||+|.-.++|..|+.-||+..+-||.|+|.||
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999999999997
No 106
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=3.8e-12 Score=104.33 Aligned_cols=78 Identities=46% Similarity=0.651 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..+|||+|||..+++++|+++|..||.+..+.+..++.+|.++|+|||+|.+.++|..|+..++|..+.|+.|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 589999999999999999999999999999999999889999999999999999999999999999999999999874
No 107
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.32 E-value=3.2e-11 Score=104.98 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=67.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
+.|.+.|+|..++-+||.++|..|-.+-.-.+.+..+.|..+|-|.|.|++.++|.+|...|+++.|.+|.|+|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 5789999999999999999999996655555566677899999999999999999999999999999999998864
No 108
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.30 E-value=1e-11 Score=101.49 Aligned_cols=143 Identities=15% Similarity=0.259 Sum_probs=109.9
Q ss_pred cccccccCCceeeeeeCCCc-------cceeccccccccccccccccc-----cccccCCCCCCCC---CCCCCCceEEE
Q 025070 22 THFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAV-----AEETASSSSSSVD---TPSEFARRVYI 86 (258)
Q Consensus 22 ~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~l~V 86 (258)
+...|.++|+|.++.+.+|. +.++.|......+........ ..+.......... .......+|||
T Consensus 23 Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFv 102 (311)
T KOG4205|consen 23 LREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFV 102 (311)
T ss_pred HHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEe
Confidence 44478999999999998887 778888865444443333222 2222221111111 11123568999
Q ss_pred cCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchhh
Q 025070 87 GNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQV 165 (258)
Q Consensus 87 ~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~ 165 (258)
++||.+++++++++.|++||.|..+.++.|..+.+.+||+||.|.+++++++++ ..+-+.+.++.+.|+.+.+.....
T Consensus 103 GG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 103 GGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccchhhcc
Confidence 999999999999999999999999999999999999999999999999999999 568888999999999998776543
No 109
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=7e-13 Score=100.14 Aligned_cols=144 Identities=19% Similarity=0.305 Sum_probs=120.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.++..++|||+|+...++++-|.++|-+-|+|..+.|+.+. ++..+ ||||.|+++-...-|++.+||..+.++.+.+.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 45667999999999999999999999999999999998887 77777 99999999999999999999999999999887
Q ss_pred ecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHH
Q 025070 157 ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDA 236 (258)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A 236 (258)
+-....- .-|...++.+.+...|+.-|.+..+++..+. +|..+.++|+.+..--..
T Consensus 83 ~r~G~sh-----------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 83 LRCGNSH-----------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred cccCCCc-----------------------chhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcC
Confidence 5432210 0155677888888999999999999998876 478889999999887777
Q ss_pred HHHHHHhcCC
Q 025070 237 EAAISSLNNS 246 (258)
Q Consensus 237 ~~A~~~l~g~ 246 (258)
..++....+.
T Consensus 139 P~~~~~y~~l 148 (267)
T KOG4454|consen 139 PFALDLYQGL 148 (267)
T ss_pred cHHhhhhccc
Confidence 7777765554
No 110
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.28 E-value=4.5e-12 Score=97.90 Aligned_cols=165 Identities=20% Similarity=0.347 Sum_probs=132.4
Q ss_pred eEEEcCCCCCCCHHH---HHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 83 RVYIGNIPRNIDNDE---LTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~---L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
..+++++-..+..+- +...|+.+..+...+++.+. -+.-++++|+.|+....-.++-..-++..++.+.++.....
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 345555545554443 36778888888888888887 67888999999999888888887777777777776655443
Q ss_pred CcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 025070 160 KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A 239 (258)
.... +...........||.+.|...++++.|-..|.+|-.....++++|..+|+++||+||.|.++.++.+|
T Consensus 177 swed--------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 177 SWED--------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred ccCC--------cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 3221 22333344557899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCeeeEEE
Q 025070 240 ISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 240 ~~~l~g~~~~g~~l~v~ 256 (258)
+..|+|+.++.|.|++.
T Consensus 249 mrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLR 265 (290)
T ss_pred HHhhcccccccchhHhh
Confidence 99999999999998764
No 111
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4.3e-12 Score=98.71 Aligned_cols=87 Identities=25% Similarity=0.433 Sum_probs=81.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......++|||-.||.+.++.+|.++|-.||.|.+.++..|+.++.+|+|+||.|.+..+|+.||+.|||..++-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 44467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
.+.+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 8876654
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-11 Score=99.76 Aligned_cols=83 Identities=28% Similarity=0.442 Sum_probs=78.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 175 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
....++.+.|||..|.+.+++++|.-+|+.||.|.++.|++|..||.+-.||||+|++.+++.+|.-+|++..|++++|+
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 025070 255 VNK 257 (258)
Q Consensus 255 v~~ 257 (258)
|.|
T Consensus 313 VDF 315 (479)
T KOG0415|consen 313 VDF 315 (479)
T ss_pred eeh
Confidence 987
No 113
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.25 E-value=3.2e-11 Score=90.63 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=78.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhC-CCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEH-GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~-G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
........+++..+|..+-+.++..+|.++ |.+..+++-++..||.++|||||+|++.+.|.-|-+.||++.++++-|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344455679999999999999999999998 7888999989999999999999999999999999999999999999999
Q ss_pred EEecCCc
Q 025070 155 VNITEKP 161 (258)
Q Consensus 155 v~~~~~~ 161 (258)
+.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987655
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=6.8e-13 Score=117.73 Aligned_cols=144 Identities=22% Similarity=0.293 Sum_probs=121.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
...++||.||+..+.+.+|...|..+|.+..+++......+..+|+||+.|...+++.+|+. +....+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhh---------
Confidence 44579999999999999999999999999888887555578999999999999999999995 44444444
Q ss_pred CcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 025070 160 KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A 239 (258)
...++|+|.|...|.++++.++..+|++.+..++... .|+++|.++|.|.+..+|.++
T Consensus 736 ---------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 736 ---------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRK 793 (881)
T ss_pred ---------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhh
Confidence 0358899999999999999999999999999877654 689999999999999999999
Q ss_pred HHHhcCCccCCeeeEE
Q 025070 240 ISSLNNSLLEGQRIRV 255 (258)
Q Consensus 240 ~~~l~g~~~~g~~l~v 255 (258)
+....+..+.-+.+.|
T Consensus 794 ~~s~d~~~~rE~~~~v 809 (881)
T KOG0128|consen 794 VASVDVAGKRENNGEV 809 (881)
T ss_pred cccchhhhhhhcCccc
Confidence 9888776665444443
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.9e-11 Score=97.59 Aligned_cols=87 Identities=21% Similarity=0.352 Sum_probs=81.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.+.|||..|.+-+|.++|.-+|+.||.|.+|.+++|..+|.+..||||+|++.++.++|.-+|++..+.+++|+
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCc
Q 025070 155 VNITEKP 161 (258)
Q Consensus 155 v~~~~~~ 161 (258)
|.+++.-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9998543
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.22 E-value=6.1e-11 Score=90.53 Aligned_cols=74 Identities=31% Similarity=0.526 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 182 YKVYVGNLAKTVTSEMLKK----CFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~----~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.+|||.||++.+..++|+. +|++||.|..|...+ +.+-+|.|||.|++.+.|..|+..|+|..+.|+.++++|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999887 999999999999887 447899999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 87 A 87 (221)
T KOG4206|consen 87 A 87 (221)
T ss_pred c
Confidence 8
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=9.7e-11 Score=103.27 Aligned_cols=111 Identities=20% Similarity=0.337 Sum_probs=86.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
.-++||||++|+.++++.+|.++|+.||+|.+|.+.. ++|||||.+.+..+|.+|+++|++..+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4578999999999999999999999999999999865 4589999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhc
Q 025070 159 EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 204 (258)
........- ..-.+ ..+-|.-||+.--..+++.+++.
T Consensus 493 ~g~G~kse~--k~~wD-------~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 493 VGKGPKSEY--KDYWD-------VELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred ccCCcchhh--hhhhh-------cccCeeEeehHhcCHHHHHhhhh
Confidence 665433210 00000 12344556776444447777654
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=3.2e-11 Score=107.79 Aligned_cols=161 Identities=17% Similarity=0.298 Sum_probs=136.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
..+...+++||++||+..+++.+|+..|..+|.|.+|.|-+-. -+....||||.|.+-..+-.|...+.+..+....++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 4555788999999999999999999999999999999996654 455556999999999999999999998888766666
Q ss_pred EEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHH
Q 025070 155 VNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234 (258)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~ 234 (258)
+.+.... ....+.+++++++.......|...|..||.|..|.+-. ...|+||.|++..
T Consensus 445 ~glG~~k----------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~ 502 (975)
T KOG0112|consen 445 IGLGQPK----------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPP 502 (975)
T ss_pred ccccccc----------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCc
Confidence 6655331 23347799999999999999999999999999887763 4579999999999
Q ss_pred HHHHHHHHhcCCccC--CeeeEEEeC
Q 025070 235 DAEAAISSLNNSLLE--GQRIRVNKA 258 (258)
Q Consensus 235 ~A~~A~~~l~g~~~~--g~~l~v~~a 258 (258)
.|..|++.|.|..++ .+.+.|.||
T Consensus 503 ~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 503 AAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cchhhHHHHhcCcCCCCCcccccccc
Confidence 999999999999997 457777775
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.15 E-value=9.1e-11 Score=103.45 Aligned_cols=73 Identities=27% Similarity=0.469 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.++||||++|+..+++.||.++|+.||.|++|.+. .+++||||.+.+..+|.+|+.+|+...+.++.|+|.||
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 45899999999999999999999999999999988 47899999999999999999999999999999999997
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.15 E-value=7.1e-11 Score=96.30 Aligned_cols=174 Identities=17% Similarity=0.248 Sum_probs=138.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
....+.|++++..++.+.+...++..+|......+........++|++++.|...+.+..|+.........++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35678999999999999999999999998888888776667889999999999999999999654334556655555444
Q ss_pred CCcchhhhhhhhhhccCCCCCCCCeEE-EcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHH
Q 025070 159 EKPLVQVDLSLLQAEDSNFVDSPYKVY-VGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAE 237 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~ 237 (258)
..... ...............+++ +.+++..+++++|+..|..+|.|..+++..++.++.+.+++||.|.+...+.
T Consensus 166 ~~~~~----~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 166 TRRGL----RPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred ccccc----cccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 33321 011111122222334455 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccCCeeeEEEe
Q 025070 238 AAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 238 ~A~~~l~g~~~~g~~l~v~~ 257 (258)
+++.. ....++|+.+.+.+
T Consensus 242 ~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 242 LALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred HHhhc-ccCcccCccccccc
Confidence 99987 88889999888765
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=92.40 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=71.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCee
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL-NGTEIGGRE 152 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l-~~~~~~g~~ 152 (258)
....+..-.+|||++|-..+++.+|+++|.+||+|+++.++... ++|||+|.+.++|++|.++. +...+.|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34455667899999998899999999999999999999998765 59999999999999988864 556679999
Q ss_pred EEEEecCC
Q 025070 153 IKVNITEK 160 (258)
Q Consensus 153 l~v~~~~~ 160 (258)
|.|.|..+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999987
No 122
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.12 E-value=8.9e-10 Score=74.55 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=72.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhh--CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeeEEE
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQE--HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG----GREIKV 155 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~--~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~----g~~l~v 155 (258)
+||+|+|||...|.++|.+++.. .|...-+.++.|..++.+.|||||-|.+.++|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999886 478889999999999999999999999999999999999999984 677778
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
.+|.-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 7775443
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.09 E-value=5.6e-10 Score=84.03 Aligned_cols=79 Identities=28% Similarity=0.375 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC-CCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEK-GQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.....+++..+|..+.+.++..+|.++ |.|...++-+...||.++|||||+|++.+.|.-|.+.||+..+.|+.|.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344678999999999999999999998 6777788879999999999999999999999999999999999999998865
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=3.1e-09 Score=86.95 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=120.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
...+..+..++||+..++.+|..+|....-..-...+.....|+..|.|.|.|.+.|.-+.|++ -|.+.++++.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeec
Confidence 3445678889999999999999999976544444444445568888999999999999999995 588889999999987
Q ss_pred cCCcchhhhhhhhhhccCCC--CCCCCeEEEcCCCCCCCHHHHHHHHhcC----CCeEEEEEeeCCCCCCCccEEEEEeC
Q 025070 158 TEKPLVQVDLSLLQAEDSNF--VDSPYKVYVGNLAKTVTSEMLKKCFSEK----GQVLSAKVLRVPGTSKSSGFGFVTFS 231 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~v~nl~~~~~~~~l~~~f~~~----G~v~~~~i~~~~~~~~~~~~~fV~f~ 231 (258)
+.....-.-......+.... ..+.-.+.+++||.++++.|+.++|.+. |..+.+..+..+ +|+..|-|||.|.
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa 214 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFA 214 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEec
Confidence 76543322111111111111 1223467899999999999999999642 355566666544 6789999999999
Q ss_pred CHHHHHHHHHH
Q 025070 232 SEEDAEAAISS 242 (258)
Q Consensus 232 ~~~~A~~A~~~ 242 (258)
.+++|..|+.+
T Consensus 215 ~ee~aq~aL~k 225 (508)
T KOG1365|consen 215 CEEDAQFALRK 225 (508)
T ss_pred CHHHHHHHHHH
Confidence 99999999985
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.07 E-value=2.1e-11 Score=100.52 Aligned_cols=151 Identities=22% Similarity=0.356 Sum_probs=122.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc-cCCeeEEEEecCC
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTE-IGGREIKVNITEK 160 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~-~~g~~l~v~~~~~ 160 (258)
..+|++||.+..+..+|..+|..--.-.+-.++. ..|||||.+.+...|.+|++.++|.. +.|+++.+..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4699999999999999999998642111222222 23799999999999999999998875 7899999987755
Q ss_pred cchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHH
Q 025070 161 PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240 (258)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~ 240 (258)
+..+ ++++.|+|+|+.+..+.|..+...||.++.+..... .......-|+|.+.+.++.|+
T Consensus 76 kkqr----------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai 136 (584)
T KOG2193|consen 76 KKQR----------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAI 136 (584)
T ss_pred HHHH----------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHH
Confidence 5332 255889999999999999999999999999877542 233445678999999999999
Q ss_pred HHhcCCccCCeeeEEEe
Q 025070 241 SSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 241 ~~l~g~~~~g~~l~v~~ 257 (258)
++++|..+.+..+++.|
T Consensus 137 ~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 137 HKLNGPQLENQHLKVGY 153 (584)
T ss_pred HhhcchHhhhhhhhccc
Confidence 99999999999998876
No 126
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=3.1e-10 Score=96.94 Aligned_cols=170 Identities=20% Similarity=0.199 Sum_probs=114.0
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 73 SVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 73 ~~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
.++....+.++|+|-|||..+++++|+++|+.||+|..++. +...+|.+||+|-+..+|++|+++|++..+.|+.
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 34445678899999999999999999999999999999877 4445789999999999999999999999999999
Q ss_pred EEEEecCCcchhhh--------hhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCcc
Q 025070 153 IKVNITEKPLVQVD--------LSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSG 224 (258)
Q Consensus 153 l~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~ 224 (258)
+............. .................++.- |++..+..-++..+..+|.+.. .. ++.-..
T Consensus 142 ~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~h 214 (549)
T KOG4660|consen 142 IKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE-----TPLLNH 214 (549)
T ss_pred hcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc-----ccchhh
Confidence 88221111111000 000111111112223344443 8888887666777777877665 21 223334
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 225 FGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 225 ~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
.-+++|.+..++..+...+ |..+.|.....
T Consensus 215 q~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~ 244 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEPRG-GFLISNSSGVI 244 (549)
T ss_pred hhhhhhccccchhhcccCC-ceecCCCCceE
Confidence 5688888888886666533 56666555433
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=88.20 Aligned_cols=75 Identities=28% Similarity=0.488 Sum_probs=66.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeEEE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL-NNSLLEGQRIRVN 256 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~ 256 (258)
.....+|||++|...+++.+|+++|.+||.|.++.+.. .+++|||+|.+.++|..|..++ |...|+|++|+|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 34458999999999999999999999999999999994 4579999999999999888765 5556899999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
|.
T Consensus 299 Wg 300 (377)
T KOG0153|consen 299 WG 300 (377)
T ss_pred eC
Confidence 95
No 128
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.01 E-value=4.7e-09 Score=71.06 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc--CCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC----CeeeEE
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSE--KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE----GQRIRV 255 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~--~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 255 (258)
++|.|+|||...+.++|.+++.. .|....+.++.|..++...|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999887 378888999999999999999999999999999999999999875 667788
Q ss_pred EeC
Q 025070 256 NKA 258 (258)
Q Consensus 256 ~~a 258 (258)
.||
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 876
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.00 E-value=2.4e-09 Score=84.41 Aligned_cols=87 Identities=28% Similarity=0.500 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
......+|+|.|||..++++||+++|..||.+..+-+..+. .|.+.|.|-|.|...+||.+|++.+|+..++|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44555789999999999999999999999999999998888 89999999999999999999999999999999999998
Q ss_pred ecCCcchh
Q 025070 157 ITEKPLVQ 164 (258)
Q Consensus 157 ~~~~~~~~ 164 (258)
...+....
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 87655443
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.95 E-value=2.8e-09 Score=91.32 Aligned_cols=81 Identities=32% Similarity=0.469 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||.+|...+...+|+.+|++||+|...+|+....+--.++|+||++.+.++|.++|.-||.+.+.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 33458999999999999999999999999999999998776667789999999999999999999999999999999987
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 482 a 482 (940)
T KOG4661|consen 482 A 482 (940)
T ss_pred c
Confidence 5
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.94 E-value=4.2e-09 Score=90.29 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
..-.++|+|.+|+..+-..+|+++|++||.|...+++++..+.-.++|+||++.+.++|.+||..||...|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34568999999999999999999999999999999999988877889999999999999999999999999999999998
Q ss_pred cCCc
Q 025070 158 TEKP 161 (258)
Q Consensus 158 ~~~~ 161 (258)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 7543
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.87 E-value=9.5e-09 Score=87.45 Aligned_cols=81 Identities=21% Similarity=0.418 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
...+|||+|||.++++.+|.+.|..||+|+...|......++..+||||+|++.++++.|+++ +...++++++.|+...
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 445699999999999999999999999999999977654455558999999999999999965 6888999999999775
Q ss_pred Cc
Q 025070 160 KP 161 (258)
Q Consensus 160 ~~ 161 (258)
+.
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 54
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.86 E-value=1.2e-08 Score=80.42 Aligned_cols=78 Identities=29% Similarity=0.385 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..+.+|.|.|||..++++||+++|..||.++.+.+-.++ .|.+.|.|-|.|...++|.+|++.+||..++|+.+++..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344789999999999999999999999988888888776 789999999999999999999999999999999998864
No 134
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=89.73 Aligned_cols=84 Identities=19% Similarity=0.385 Sum_probs=74.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKY---TGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~---~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
.....++|||+||++.++++.|...|..||+|.+++++--.. ..+.+-|+||-|.+..||++|++.|+|+.+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 356678899999999999999999999999999999975442 23456699999999999999999999999999999
Q ss_pred EEEecCC
Q 025070 154 KVNITEK 160 (258)
Q Consensus 154 ~v~~~~~ 160 (258)
++.|++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999854
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.80 E-value=9.5e-09 Score=81.24 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=78.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......+.+||+|+...+|.+++...|+.||.+..+.++.|...|.++|||||+|.+.+.++.|++ |++..+.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 344566899999999999999999999999999999999999888999999999999999999996 9999999999999
Q ss_pred EecCCc
Q 025070 156 NITEKP 161 (258)
Q Consensus 156 ~~~~~~ 161 (258)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887544
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.76 E-value=1.4e-08 Score=78.85 Aligned_cols=81 Identities=28% Similarity=0.530 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
...+.+||-+.|..+++++-|-..|.+|......++++|..+|+++||+||.|.+.+++.+|+.+|+|.+++.+.|...-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred c
Q 025070 158 T 158 (258)
Q Consensus 158 ~ 158 (258)
+
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 4
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.75 E-value=3.4e-08 Score=86.62 Aligned_cols=175 Identities=13% Similarity=0.025 Sum_probs=129.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
.....+-+.+.+.+....+++++|... .+....+..+...+...|-++|.|....++++|++ -+...+-+|.+.+...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCC
Confidence 344566678999999999999999865 56677777777566668899999999999999995 5777778888888654
Q ss_pred CCcchhhhh-----------------------hhhhhcc--CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EE
Q 025070 159 EKPLVQVDL-----------------------SLLQAED--SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLS-AK 212 (258)
Q Consensus 159 ~~~~~~~~~-----------------------~~~~~~~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~ 212 (258)
......... ....... .........|||..||..+++.++.+.|...-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 322221100 0000000 111223478999999999999999999998667776 66
Q ss_pred EeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 213 VLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 213 i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
+-+.+ ++.-++.|||.|.+++++..|..--+...++.|.|+|.
T Consensus 467 lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 467 LTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred eccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 66655 56778899999999999999998777777888888875
No 138
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.71 E-value=1.1e-07 Score=72.54 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEee-CCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC---Ceee
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLR-VPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE---GQRI 253 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~-~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~---g~~l 253 (258)
....++|||.+||.++..-+|..+|..|-.-+...+.. ++....++.+|||.|.+..+|..|+++|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34568999999999999999999999986666665554 2333455679999999999999999999999986 7789
Q ss_pred EEEeC
Q 025070 254 RVNKA 258 (258)
Q Consensus 254 ~v~~a 258 (258)
++++|
T Consensus 111 hiElA 115 (284)
T KOG1457|consen 111 HIELA 115 (284)
T ss_pred Eeeeh
Confidence 99886
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.71 E-value=1.7e-08 Score=82.92 Aligned_cols=162 Identities=14% Similarity=0.152 Sum_probs=115.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYT---GRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~---~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
..|.|.||.+++|.++++.+|...|.|..+.++....+ ......|||.|.+...+..|- -|.+..+-++-|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 37999999999999999999999999999999875422 234568999999999988887 46777777777766544
Q ss_pred CCcchhhhhhh--hh---------hccC-------------------------------CCCCCCCeEEEcCCCCCCCHH
Q 025070 159 EKPLVQVDLSL--LQ---------AEDS-------------------------------NFVDSPYKVYVGNLAKTVTSE 196 (258)
Q Consensus 159 ~~~~~~~~~~~--~~---------~~~~-------------------------------~~~~~~~~l~v~nl~~~~~~~ 196 (258)
........... .. +.+. ......+++++.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 22211111000 00 0000 000011678888999999999
Q ss_pred HHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC
Q 025070 197 MLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249 (258)
Q Consensus 197 ~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~ 249 (258)
++.++|..+|.|.+..+.- |....+|.++|........|+. ++|..+.
T Consensus 167 e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999998877663 3455678899999989888888 5666543
No 140
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.63 E-value=1.7e-07 Score=76.03 Aligned_cols=77 Identities=27% Similarity=0.431 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLS--------AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 252 (258)
...|||.|||..+|.+++.++|++||.|.. |+++++. .|.-+|=|.+.|-..++...|++.|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 356999999999999999999999998765 6788876 4899999999999999999999999999999999
Q ss_pred eEEEeC
Q 025070 253 IRVNKA 258 (258)
Q Consensus 253 l~v~~a 258 (258)
|+|+-|
T Consensus 213 ~rVerA 218 (382)
T KOG1548|consen 213 LRVERA 218 (382)
T ss_pred EEEehh
Confidence 999876
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=3.2e-08 Score=84.86 Aligned_cols=72 Identities=28% Similarity=0.415 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
..+.++|+|.|||..+++++|+++|+.||+|..+..-. ..++.+||+|-|..+|++|+++|+++.+.|++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34568999999999999999999999999999855433 5679999999999999999999999999998875
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.62 E-value=7.3e-08 Score=76.26 Aligned_cols=78 Identities=29% Similarity=0.340 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.....+|++|+...++.+++...|+.||.+..+.+..|...|.++|++||+|.+.+.+..|+. |+|..+.|+.+.|.+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 445789999999999999999999999999999999999998999999999999999999999 999999999999876
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.59 E-value=1.2e-07 Score=83.40 Aligned_cols=81 Identities=25% Similarity=0.421 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCC---CCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVP---GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~---~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
.+..++||+.||++.++++.|...|..||.|.+++|+... +....+.||||.|-+..+|.+|+..|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4566889999999999999999999999999999998643 3345677999999999999999999999999999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
+.|+
T Consensus 251 ~gWg 254 (877)
T KOG0151|consen 251 LGWG 254 (877)
T ss_pred eccc
Confidence 9985
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.59 E-value=1.6e-07 Score=80.09 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=64.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
..|||.|||.+++..+|+++|..||.|+...|......+...+||||+|.+.+++..|+++ +-..++|++|.|+
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 5699999999999999999999999999988876442334449999999999999999995 5778999999986
No 145
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=5.9e-08 Score=75.00 Aligned_cols=68 Identities=32% Similarity=0.608 Sum_probs=63.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 183 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+||++||+.+.+.+|..+|..||.+..+.+.. +|+||+|++..+|..|+..+||..+.|..+.|+||
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 589999999999999999999999999888764 78899999999999999999999999998999886
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=9.1e-08 Score=72.82 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..++|+|.|+-..++++-|.++|-..|.|..+.|..+. +++.+ ||||.|++..+..-|++.+||..+.++.+.+.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34889999999999999999999999999999998876 44555 999999999999999999999999999888764
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.33 E-value=3.8e-06 Score=54.35 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=48.0
Q ss_pred ceEEEcCCCCCCCHHHHHH----HHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 82 RRVYIGNIPRNIDNDELTK----IVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~----~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
..|+|.|||.+.+...|+. ++..+| .|..+ ..+.|.|.|.+.+.|++|.+.|+|....|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999999887665 445676 66555 23689999999999999999999999999999999
Q ss_pred ecCCc
Q 025070 157 ITEKP 161 (258)
Q Consensus 157 ~~~~~ 161 (258)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87433
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.32 E-value=2.3e-06 Score=59.34 Aligned_cols=69 Identities=23% Similarity=0.422 Sum_probs=44.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC-----ccCCeeeEEE
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS-----LLEGQRIRVN 256 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~-----~~~g~~l~v~ 256 (258)
..|+|.+++..++.++|++.|+.||.|..|.+.+ ....|||+|.+++.|.+|+.++... .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3588999999999999999999999999988885 3356999999999999999877543 5666655543
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=2.5e-08 Score=89.30 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=126.6
Q ss_pred CCceEEEcCCCCCCCHH-HHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 80 FARRVYIGNIPRNIDND-ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~-~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
..+..++.++.+..... ..+..|..+|.|+.++.......-....++++++....+++.|. ...+..+.++...+..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCC
Confidence 44667888887776555 67888999999999999763322222338999999999999999 56888889999999888
Q ss_pred CCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHH
Q 025070 159 EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~ 238 (258)
.+.......... .+......++|++|++..+.+++|...|..+|.+..+.+......+..+|+||+.|..+++|.+
T Consensus 649 d~~~~~~~~kvs----~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 649 DAEEKEENFKVS----PNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred CchhhhhccCcC----chHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 666532211111 1111223578999999999999999999999999888887767778999999999999999999
Q ss_pred HHHHhcCCccCC
Q 025070 239 AISSLNNSLLEG 250 (258)
Q Consensus 239 A~~~l~g~~~~g 250 (258)
|+....+..++.
T Consensus 725 aV~f~d~~~~gK 736 (881)
T KOG0128|consen 725 AVAFRDSCFFGK 736 (881)
T ss_pred hhhhhhhhhhhh
Confidence 998666655443
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.27 E-value=9.1e-06 Score=52.63 Aligned_cols=67 Identities=27% Similarity=0.364 Sum_probs=47.0
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHhcCC-CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 182 YKVYVGNLAKTVTSEM----LKKCFSEKG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~----l~~~f~~~G-~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
..|+|.|||...+... |++++..+| .|..+. .+.|+|.|.+.+.|.+|.+.|+|-.+-|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4589999999888755 567777875 465442 2569999999999999999999999999999998
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
|.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 74
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.23 E-value=1.1e-05 Score=65.49 Aligned_cols=76 Identities=25% Similarity=0.418 Sum_probs=61.1
Q ss_pred CeEEEcCCCCCCCHHHH------HHHHhcCCCeEEEEEeeCC---CCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 025070 182 YKVYVGNLAKTVTSEML------KKCFSEKGQVLSAKVLRVP---GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l------~~~f~~~G~v~~~~i~~~~---~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 252 (258)
+-+||-+||+.+..|++ .++|.+||.|..|.|-+.. ++..+.--.||+|.+.++|.+|+...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 56899999998877763 4899999999998887533 11111122599999999999999999999999999
Q ss_pred eEEEe
Q 025070 253 IRVNK 257 (258)
Q Consensus 253 l~v~~ 257 (258)
|+..|
T Consensus 195 lkatY 199 (480)
T COG5175 195 LKATY 199 (480)
T ss_pred Eeeec
Confidence 99876
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.20 E-value=1.3e-06 Score=71.58 Aligned_cols=84 Identities=18% Similarity=0.369 Sum_probs=75.2
Q ss_pred CCCceEE-EcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 79 EFARRVY-IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 79 ~~~~~l~-V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
....+++ |++++.+++.++|+.+|..+|.|..++++.+..++..+|+|||.|.....+.+++.. +...+.++++.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445555 999999999999999999999999999999999999999999999999999999976 78889999999998
Q ss_pred cCCcch
Q 025070 158 TEKPLV 163 (258)
Q Consensus 158 ~~~~~~ 163 (258)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 866543
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.07 E-value=4.9e-06 Score=68.17 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLS--------AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~ 249 (258)
.....++||.++|..+++++|.++|.++|.|.. +.+.++.+|+.+++-|.|.|.+...|..|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 344578999999999999999999999987743 778889999999999999999999999999999999999
Q ss_pred CeeeEEEeC
Q 025070 250 GQRIRVNKA 258 (258)
Q Consensus 250 g~~l~v~~a 258 (258)
|..|+|.+|
T Consensus 143 gn~ikvs~a 151 (351)
T KOG1995|consen 143 GNTIKVSLA 151 (351)
T ss_pred CCCchhhhh
Confidence 999998775
No 154
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.05 E-value=3.5e-06 Score=65.83 Aligned_cols=74 Identities=27% Similarity=0.386 Sum_probs=63.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCC--------CCccc----EEEEEeCCHHHHHHHHHHhCCCc
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYT--------GRSRR----FAFVMMKTVEDANAVIEKLNGTE 147 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~--------~~~~g----~afV~f~~~~~A~~ai~~l~~~~ 147 (258)
....||+++||+.+...-|+++|+.||.|-.|.+-+...+ |.+++ -|||+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5578999999999999999999999999999999766544 22222 39999999999999999999999
Q ss_pred cCCeeE
Q 025070 148 IGGREI 153 (258)
Q Consensus 148 ~~g~~l 153 (258)
++|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 988653
No 155
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.99 E-value=2.4e-05 Score=62.37 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCeEEEEEeeCCCCCCCcc-EEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 195 SEMLKKCFSEKGQVLSAKVLRVPGTSKSSG-FGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 195 ~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~-~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
++++++.+++||.|..+.|.-++..-.... ..||+|+++++|.+|+-.|||+.|+||.++..|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 357889999999999998887653222222 479999999999999999999999999987654
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.97 E-value=1.6e-05 Score=65.25 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCee--------EeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVE--------KAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
.....+|||.+||..+++++|.++|.++|.|. .+.+.+|..++..+|-|.|.|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567899999999999999999999999875 4777888899999999999999999999999999999999
Q ss_pred CeeEEEEecCCc
Q 025070 150 GREIKVNITEKP 161 (258)
Q Consensus 150 g~~l~v~~~~~~ 161 (258)
+..|.|..+...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999877544
No 157
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.97 E-value=1.3e-05 Score=72.78 Aligned_cols=145 Identities=14% Similarity=0.226 Sum_probs=107.4
Q ss_pred eeccccceecccccccCCceeeeeeCCC--c----cceeccccccccccccccccccccccCCCCCCCCC-CCCCCceEE
Q 025070 13 SQQNLIFSKTHFTFQSRQPILQIRFPKL--S----YSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDT-PSEFARRVY 85 (258)
Q Consensus 13 ~~~~~~~s~~~~~F~~~G~i~~i~~p~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 85 (258)
...++..+.....|..+|.|-.|.+-.- . |+++.|.+..+...+..-................. .....+.++
T Consensus 380 l~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~kst~ttr~~ 459 (975)
T KOG0112|consen 380 LDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKSTPTTRLQ 459 (975)
T ss_pred cccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccccccceeec
Confidence 3455666667779999999988765333 2 88888888777766654443333333322222222 566778899
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEecCCcch
Q 025070 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG--REIKVNITEKPLV 163 (258)
Q Consensus 86 V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g--~~l~v~~~~~~~~ 163 (258)
+++|.+.+....|...|..||.|..|.+-. |. .||||+|++...|+.|++.+-|..+++ +.+.|.++.....
T Consensus 460 sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 460 SGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred cCCCCCCChHHHHHHHhhccCcceeeeccc----CC--cceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 999999999999999999999998876632 22 399999999999999999999999964 7788888765433
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.96 E-value=1.9e-05 Score=54.77 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=43.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-----ccCCeeEEEE
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT-----EIGGREIKVN 156 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~-----~~~g~~l~v~ 156 (258)
..|++.+++..++-++|++.|+.||.|..|.+.... ..|||.|.+.++|++|++.+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468899999999999999999999999988886543 27999999999999999876433 3445444444
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.95 E-value=2.5e-05 Score=46.95 Aligned_cols=52 Identities=13% Similarity=0.295 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai 140 (258)
+.|-|.|.+++..+ .++.+|..||+|..+.+... ....||.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56889999887774 45558889999999888522 248999999999999985
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=5.9e-05 Score=65.34 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=65.5
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-
Q 025070 77 PSEFARRVYIGNIPRNI------DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG- 149 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~------t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~- 149 (258)
...-...|+|.|+|-=- -..-|..+|+++|++..+.++.+. .|..+||.|++|.+..+|+.|++.|||+.+.
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 33566789999997621 123356689999999999999998 4559999999999999999999999999984
Q ss_pred CeeEEEEec
Q 025070 150 GREIKVNIT 158 (258)
Q Consensus 150 g~~l~v~~~ 158 (258)
.+++.|..-
T Consensus 133 nHtf~v~~f 141 (698)
T KOG2314|consen 133 NHTFFVRLF 141 (698)
T ss_pred cceEEeehh
Confidence 677777643
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.82 E-value=6.5e-05 Score=61.12 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=65.3
Q ss_pred CCCCceEEEcCCCCCCCHHHH------HHHHhhCCCeeEeEEeeeCC-CCCcccEE--EEEeCCHHHHHHHHHHhCCCcc
Q 025070 78 SEFARRVYIGNIPRNIDNDEL------TKIVQEHGAVEKAEVIYDKY-TGRSRRFA--FVMMKTVEDANAVIEKLNGTEI 148 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L------~~~F~~~G~i~~~~~~~~~~-~~~~~g~a--fV~f~~~~~A~~ai~~l~~~~~ 148 (258)
.....-+||-+||+.+..+++ .++|.+||.|..|.+-+... .....+.+ ||.|.+.+||.+||.+.+|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 345567999999998876662 35899999998887754331 12223334 9999999999999999999999
Q ss_pred CCeeEEEEecCCc
Q 025070 149 GGREIKVNITEKP 161 (258)
Q Consensus 149 ~g~~l~v~~~~~~ 161 (258)
+||-|+..+...+
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999999887554
No 162
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00013 Score=62.76 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=63.4
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHh-hCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQ-EHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~ 142 (258)
....-.+.+|||||+||.-++.++|..+|+ .||.|..+-|=+|+.-+.++|-|=|.|.+..+-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 455667889999999999999999999999 599999999999987899999999999999999999964
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.79 E-value=8.4e-05 Score=44.64 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHH
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~ 240 (258)
+.|.|.|.+....+ .+...|..||.|..+.+. ......||+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 56888999877664 455588899999998876 23567999999999999985
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.78 E-value=9.5e-05 Score=58.01 Aligned_cols=90 Identities=22% Similarity=0.314 Sum_probs=77.4
Q ss_pred HHHHHHHHHhCCCccCCeeEEEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEE
Q 025070 134 EDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKV 213 (258)
Q Consensus 134 ~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i 213 (258)
.-|..|-.+|++....++.++|.++.. ..|+|.|+...++.+.+.+.|+.||.|....+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~ 63 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVA 63 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------------------ceEEEEecchhhhhHHHHHhhhhcCccchhee
Confidence 346667777899999999999999853 35999999999999999999999999999887
Q ss_pred eeCCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 025070 214 LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245 (258)
Q Consensus 214 ~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g 245 (258)
+.|. .+...+-++|+|...-.|.+|....+-
T Consensus 64 ~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 64 KVDD-RGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred eecc-cccccccchhhhhcchhHHHHHHHhcc
Confidence 7765 567788899999999999999987743
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00011 Score=63.67 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=61.3
Q ss_pred CeEEEcCCCCCCCH------HHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC-CeeeE
Q 025070 182 YKVYVGNLAKTVTS------EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE-GQRIR 254 (258)
Q Consensus 182 ~~l~v~nl~~~~~~------~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~ 254 (258)
..++|.|+|---.. .-|..+|+++|++....++.+.++| .+||.|++|.+..+|..|++.|||..++ +++..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 67889898764332 3456889999999999999888665 8999999999999999999999999986 66665
Q ss_pred EE
Q 025070 255 VN 256 (258)
Q Consensus 255 v~ 256 (258)
|.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 53
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.73 E-value=2.2e-05 Score=61.45 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=61.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCC--------CCCc----cEEEEEeCCHHHHHHHHHHhcCCc
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGT--------SKSS----GFGFVTFSSEEDAEAAISSLNNSL 247 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~--------~~~~----~~~fV~f~~~~~A~~A~~~l~g~~ 247 (258)
....||+.+||+.+.-.-|+++|..||.|-.|.+.....+ |... .-|+|+|.+-..|.+....|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3367999999999999999999999999999988764432 1222 247999999999999999999999
Q ss_pred cCCee
Q 025070 248 LEGQR 252 (258)
Q Consensus 248 ~~g~~ 252 (258)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 167
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.72 E-value=3.6e-05 Score=62.88 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCC--CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
..-.+||+||-+.+|++||.+-....| .+.+++++.+..+|.++|||+|...+.....+.++.|....++|+.-.|.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 344699999999999999999999887 788899999999999999999999999999999999999999887766643
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.70 E-value=0.00019 Score=48.99 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=50.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEe-eCC------CCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeee-
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVL-RVP------GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI- 253 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~-~~~------~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l- 253 (258)
..|.|-+.|+. ....+.+.|++||.|.+..-. ++. ..........|+|+++.+|.+|+. -||+.++|..+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 56888899988 557788899999999776411 000 001244678999999999999999 79999988644
Q ss_pred EEEe
Q 025070 254 RVNK 257 (258)
Q Consensus 254 ~v~~ 257 (258)
-|.|
T Consensus 85 GV~~ 88 (100)
T PF05172_consen 85 GVKP 88 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 3444
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.54 E-value=0.00055 Score=46.81 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=51.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeE-EeeeC------CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAE-VIYDK------YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~-~~~~~------~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
..+-|.|-+.|+. ....|.+.|++||.|.+.. +.++. ........-.|+|.++.+|++|| ..||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 3456889999888 6678889999999987664 11100 01123348999999999999999 56999998765
Q ss_pred E-EEEec
Q 025070 153 I-KVNIT 158 (258)
Q Consensus 153 l-~v~~~ 158 (258)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 35554
No 170
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.53 E-value=8e-05 Score=64.93 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=63.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc---CCee
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSE-KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL---EGQR 252 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~---~g~~ 252 (258)
....++.|+|.||-...|.-+|++++.+ .|.|...+|-+ =+.+|||.|.+.++|.....+|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4456689999999999999999999995 66777764432 346799999999999999999999976 6788
Q ss_pred eEEEeC
Q 025070 253 IRVNKA 258 (258)
Q Consensus 253 l~v~~a 258 (258)
|.+.|+
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 888774
No 171
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.47 E-value=0.00071 Score=43.93 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=44.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~ 144 (258)
.+...||+ +|......||.++|+.||.| .|.++.|- .|||...+.+.|..|+..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 34556666 99999999999999999999 67777664 79999999999999998765
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.45 E-value=7.4e-05 Score=58.68 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=50.4
Q ss_pred HHHHHHh-hCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 97 ELTKIVQ-EHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 97 ~L~~~F~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
++...|+ +||+|+.+.+..+. .-.-.|-+||+|...++|++|++.||+..+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 79999998765443 33467889999999999999999999999999999998874
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.42 E-value=0.00014 Score=61.11 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeC---CCCCC--C--------ccEEEEEeCCHHHHHHHHHHhcC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV---PGTSK--S--------SGFGFVTFSSEEDAEAAISSLNN 245 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~---~~~~~--~--------~~~~fV~f~~~~~A~~A~~~l~g 245 (258)
-..++|.+.|||.+-.-+.|..+|..+|.|..|+|.+. +++.. . +-+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45689999999999999999999999999999999875 32211 1 45899999999999999998854
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.37 E-value=0.00091 Score=48.56 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=45.8
Q ss_pred HHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcch
Q 025070 96 DELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV 163 (258)
Q Consensus 96 ~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~ 163 (258)
.+|.+.|..||++.-+++..+ .-||.|.+.+.|-+|+ .++|..+.|+.|.|....+.+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccHH
Confidence 367888999999887777543 5999999999999999 7899999999999998877655
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.32 E-value=0.0011 Score=48.15 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 196 ~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.+|.+.|..||.+.-+++.- +.-+|+|.+-++|.+|+. ++|.+++|+.|+|+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred HHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 36778899999998887774 348999999999999999 899999999999874
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.31 E-value=0.00012 Score=57.58 Aligned_cols=61 Identities=33% Similarity=0.405 Sum_probs=49.4
Q ss_pred HHHHHHHh-cCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 196 EMLKKCFS-EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 196 ~~l~~~f~-~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
+++...++ +||.|+.+.|-.... -.-.|-+||.|...++|.+|++.||++.++|+.|...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 55666666 899999987664332 23366799999999999999999999999999998875
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.28 E-value=0.00032 Score=58.96 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=58.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeee---CCC--CC--------cccEEEEEeCCHHHHHHHHHHhC
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYD---KYT--GR--------SRRFAFVMMKTVEDANAVIEKLN 144 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~---~~~--~~--------~~g~afV~f~~~~~A~~ai~~l~ 144 (258)
.-+.++|.+.|||.+-.-+.|.++|..+|.|..|+|+.- +.+ +. .+-+|+|+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 358899999999999988999999999999999999765 222 22 24579999999999999998775
Q ss_pred CCc
Q 025070 145 GTE 147 (258)
Q Consensus 145 ~~~ 147 (258)
...
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 544
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.19 E-value=0.0032 Score=38.81 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=45.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhC---CCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEH---GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~---G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l 143 (258)
..|+|+|+ .+++.++|+.+|..| .....+.++-|. .|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 46999999 568999999999999 134488888876 6999999999999999754
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.18 E-value=0.00064 Score=59.51 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=66.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhh-CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc---C
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI---G 149 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~---~ 149 (258)
.......++.|||.||=.-+|.-+|++++.. .|.|+..+| - +-+..|||.|.+.++|.....+|||..| +
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-D-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-D-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-H-----HhhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 3345677889999999999999999999994 678877733 1 1345899999999999999999999998 5
Q ss_pred CeeEEEEecCC
Q 025070 150 GREIKVNITEK 160 (258)
Q Consensus 150 g~~l~v~~~~~ 160 (258)
.+.|.+.|...
T Consensus 511 PK~L~adf~~~ 521 (718)
T KOG2416|consen 511 PKHLIADFVRA 521 (718)
T ss_pred CceeEeeecch
Confidence 78888888643
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.07 E-value=0.0024 Score=51.26 Aligned_cols=65 Identities=23% Similarity=0.266 Sum_probs=53.4
Q ss_pred HHHHHHHHhhCCCeeEeEEeeeCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 95 NDELTKIVQEHGAVEKAEVIYDKYTGRS-RRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 95 ~~~L~~~F~~~G~i~~~~~~~~~~~~~~-~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
++++.+-.++||.|..|.+...+..... .---||+|...++|.+|+-.|||.+++||.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5567888899999999999877622211 1248999999999999999999999999999888764
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.02 E-value=0.0059 Score=37.62 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=44.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC---CCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEK---GQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l 243 (258)
+..|+|+|+ ..++.+||+.+|..| .....+..+-|. -|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 367999998 568999999999998 234566666554 2889999999999999865
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.75 E-value=0.015 Score=41.83 Aligned_cols=77 Identities=10% Similarity=0.213 Sum_probs=58.0
Q ss_pred CCCCCCceEEEcCCCCCC-CHH---HHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 025070 76 TPSEFARRVYIGNIPRNI-DND---ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGR 151 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~-t~~---~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 151 (258)
....+..+|.|+=|..++ ..+ .+...++.||+|.++.+.-. -.|.|.|++..+|-+|+.+++. ...|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 345566789998777766 233 45556778999999977422 3799999999999999988776 66788
Q ss_pred eEEEEecCC
Q 025070 152 EIKVNITEK 160 (258)
Q Consensus 152 ~l~v~~~~~ 160 (258)
.+.+.|...
T Consensus 153 m~qCsWqqr 161 (166)
T PF15023_consen 153 MFQCSWQQR 161 (166)
T ss_pred eEEeecccc
Confidence 888877654
No 183
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.72 E-value=0.0017 Score=53.38 Aligned_cols=75 Identities=25% Similarity=0.388 Sum_probs=64.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKG--QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
..++||+||-|.+|++||.+.+...| .+..+++.-.+..|.++|||.|-.-+..+.++.++.|-.+.|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 36799999999999999999888866 4666777778888999999999999999999999999888888875433
No 184
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.70 E-value=0.0021 Score=53.56 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=57.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC---CCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG---TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~---~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
..|.|.||.+.++.++++.+|...|.|..+.++.... -......|||.|.+...+..|.+ |..+.+=|+.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 4799999999999999999999999999999885221 11234579999999999999988 5555555554443
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.52 E-value=0.046 Score=38.11 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=48.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
..+.+...|.-++.++|..+.+.+- .|..+++++|.. .++=.++++|.+.++|+.....+||..+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444444444555666666655543 678899988753 35557999999999999999999999875
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.51 E-value=0.0048 Score=47.05 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhc-CCCe---EEEE--EeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSE-KGQV---LSAK--VLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~-~G~v---~~~~--i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~ 248 (258)
..+|.|++||++++++++.+.+.+ ++.- ..+. +............|||.|.+.+++..-...++|..+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 368999999999999999998777 6655 2222 111111112234699999999999999999999765
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.47 E-value=0.012 Score=42.34 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=51.2
Q ss_pred CCeEEEcCCCCCCC----HHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 181 PYKVYVGNLAKTVT----SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 181 ~~~l~v~nl~~~~~----~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
-.+|.|+=+..++. -..+...++.||.|+++... ++.-|.|.|++..+|-+|+.++.. ..-|..+.++
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 35677765555443 33445566779999998866 345699999999999999999887 5567777777
Q ss_pred e
Q 025070 257 K 257 (258)
Q Consensus 257 ~ 257 (258)
|
T Consensus 158 W 158 (166)
T PF15023_consen 158 W 158 (166)
T ss_pred c
Confidence 6
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.47 E-value=0.05 Score=37.94 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=49.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC-CCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEK-GQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~ 249 (258)
..+.+...|..++.++|..+...+ ..|..++++++.. ..+-.+.++|.+.+.|..-...+||+.++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344455555566667777777665 4577889988653 45556899999999999999999999875
No 189
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.41 E-value=0.005 Score=48.62 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=57.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~ 144 (258)
..|||.||+..+.-+.+.+-|+.||+|....+..|. .++..+-++|.|...-.|.+|...+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 679999999999999999999999999998888887 78889999999999999999998764
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.37 E-value=0.0028 Score=48.31 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=49.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh-CCCe---eEeEEeeeCCC-C-CcccEEEEEeCCHHHHHHHHHHhCCCccCC--
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQE-HGAV---EKAEVIYDKYT-G-RSRRFAFVMMKTVEDANAVIEKLNGTEIGG-- 150 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~-~G~i---~~~~~~~~~~~-~-~~~g~afV~f~~~~~A~~ai~~l~~~~~~g-- 150 (258)
....+|.|++||+++|++++++.++. +|.- ..+.-...... + ..-.-|||.|.+.+++....+.++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34468999999999999999997776 6655 23321111111 1 123369999999999999999999988732
Q ss_pred ---eeEEEEecC
Q 025070 151 ---REIKVNITE 159 (258)
Q Consensus 151 ---~~l~v~~~~ 159 (258)
....|.++.
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 344555553
No 191
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.29 E-value=0.27 Score=39.94 Aligned_cols=169 Identities=11% Similarity=0.138 Sum_probs=105.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCC-------CCCcccEEEEEeCCHHHHHHHH----HHh
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKY-------TGRSRRFAFVMMKTVEDANAVI----EKL 143 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~-------~~~~~g~afV~f~~~~~A~~ai----~~l 143 (258)
..+.-.+|.|.+.|+..+++-..+...|.+||+|++++++.+.. .........+.|-+.+.+-... +.|
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999999999988761 1123357999999998876543 333
Q ss_pred CC--CccCCeeEEEEecCCcchhhh------hhh--h--hh--ccCCCCCCCCeEEEcCCCCCCCHHHHH----HHHhcC
Q 025070 144 NG--TEIGGREIKVNITEKPLVQVD------LSL--L--QA--EDSNFVDSPYKVYVGNLAKTVTSEMLK----KCFSEK 205 (258)
Q Consensus 144 ~~--~~~~g~~l~v~~~~~~~~~~~------~~~--~--~~--~~~~~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~ 205 (258)
.. ..+....|.+.+..-...... ... . .. .........+.|.|. +...+..+++. .++..-
T Consensus 89 sEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccC
Confidence 32 235667777766542111100 000 0 00 011223344667774 33444344432 222222
Q ss_pred C----CeEEEEEee--CCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 025070 206 G----QVLSAKVLR--VPGTSKSSGFGFVTFSSEEDAEAAISSLN 244 (258)
Q Consensus 206 G----~v~~~~i~~--~~~~~~~~~~~fV~f~~~~~A~~A~~~l~ 244 (258)
+ .++++.++. .+...-+..||.+.|-+...|.+.++-+.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3 367777774 22334567899999999999999887665
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.27 E-value=0.002 Score=52.91 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=58.5
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEeeCCC----CCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 182 YKVYVGNLAKTVTSEMLK---KCFSEKGQVLSAKVLRVPG----TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~i~~~~~----~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
+-+|+-+|+..+..+.+. +.|.+||.|..+...+++. .+... -+||+|...++|.+|+...+|..++|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457788888877666553 6788999999998888662 12222 389999999999999999999999999876
Q ss_pred EEe
Q 025070 255 VNK 257 (258)
Q Consensus 255 v~~ 257 (258)
..+
T Consensus 157 a~~ 159 (327)
T KOG2068|consen 157 ASL 159 (327)
T ss_pred Hhh
Confidence 654
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.22 E-value=0.016 Score=44.46 Aligned_cols=59 Identities=27% Similarity=0.250 Sum_probs=45.9
Q ss_pred CHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhc--CCccCCeeeEEEeC
Q 025070 194 TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN--NSLLEGQRIRVNKA 258 (258)
Q Consensus 194 ~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~a 258 (258)
..+.|+++|..++.+..+.+++ +=+...|.|.+.++|.+|...|+ +..+.|..+++.|+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 3478999999999988888775 33558999999999999999999 99999999999875
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.03 E-value=0.03 Score=36.55 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=40.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g 245 (258)
...++ .+|......||.++|++||.|. |..+.| .-|||...+.+.|..|+..+.-
T Consensus 10 HVFhl-tFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHL-TFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEE-E--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEE-eCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 34455 4999999999999999999886 444432 3499999999999999887753
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.93 E-value=0.0037 Score=51.35 Aligned_cols=85 Identities=16% Similarity=0.291 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHH---HHhhCCCeeEeEEeeeCC--CCC-cccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 79 EFARRVYIGNIPRNIDNDELTK---IVQEHGAVEKAEVIYDKY--TGR-SRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~---~F~~~G~i~~~~~~~~~~--~~~-~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
...+-+||-+|+.....+.+.+ .|.+||.|..+.+..+.. .+. .-..+||.|+..++|..||+..+|..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3446789999998886666554 888999999998877652 111 1124999999999999999999999999999
Q ss_pred EEEEecCCcch
Q 025070 153 IKVNITEKPLV 163 (258)
Q Consensus 153 l~v~~~~~~~~ 163 (258)
++..+..++..
T Consensus 155 lka~~gttkyc 165 (327)
T KOG2068|consen 155 LKASLGTTKYC 165 (327)
T ss_pred hHHhhCCCcch
Confidence 88877765543
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.76 E-value=0.052 Score=46.45 Aligned_cols=68 Identities=15% Similarity=0.344 Sum_probs=59.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG 150 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 150 (258)
.+.|.|-.+|..+|..||..|...+- .|.++++++|... ++=..+|.|.+.++|....+.+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999999865 7899999996532 33369999999999999999999998853
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.61 E-value=0.007 Score=51.83 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=63.0
Q ss_pred CCceEEEcCCCCCC-CHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 80 FARRVYIGNIPRNI-DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 80 ~~~~l~V~nl~~~~-t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
..+.|-+.-.|+.. |.++|...|.+||.|+.|.+-.. .-.|.|+|.+..+|-+|. ..++..|+++.|++.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 44556666677776 78999999999999999988443 237999999999998888 67999999999999998
Q ss_pred CCcc
Q 025070 159 EKPL 162 (258)
Q Consensus 159 ~~~~ 162 (258)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7754
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.35 E-value=0.054 Score=41.55 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=46.8
Q ss_pred CHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCeeEEEEecCCc
Q 025070 94 DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN--GTEIGGREIKVNITEKP 161 (258)
Q Consensus 94 t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~--~~~~~g~~l~v~~~~~~ 161 (258)
..+.|+++|..++.+..+..++.. +-..|.|.+.++|.+|...|+ +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347899999999999888887654 369999999999999999999 89999999999988443
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.25 E-value=0.087 Score=46.35 Aligned_cols=65 Identities=25% Similarity=0.370 Sum_probs=51.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc--CCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC--ccCCeee
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSE--KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS--LLEGQRI 253 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~--~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~--~~~g~~l 253 (258)
+.+.++.||..+..|+++.+|.. +..+.++.+.... + =||+|++..||..|...|... .|.|+.|
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 66789999999999999999986 7788888777533 2 489999999999999877542 3555544
No 200
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.04 E-value=0.024 Score=37.65 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=47.0
Q ss_pred EEEEeCCHHHHHHHHHHh-CCCccCCeeEEEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 025070 126 AFVMMKTVEDANAVIEKL-NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203 (258)
Q Consensus 126 afV~f~~~~~A~~ai~~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 203 (258)
|+|.|.+.+-|++.++.- +...+++..+.|....-... ....-........+++.++|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~-----~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG-----HLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC-----CceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999531 22335677776654421111 01111122234558899999999999999987654
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.90 E-value=0.13 Score=44.19 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=58.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC-CCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEK-GQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g 250 (258)
.+.|.|-.+|..++..||..++..+ -.|..+++++|+. +.+-.+.|+|++.++|..-.+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5789999999999999999999885 5689999999552 334458999999999999999999998753
No 202
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.85 E-value=0.038 Score=46.92 Aligned_cols=70 Identities=33% Similarity=0.518 Sum_probs=54.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCc-cCCeeeEEEe
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL-LEGQRIRVNK 257 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~-~~g~~l~v~~ 257 (258)
+.+|++||.+..+..+|...|...-.--+-.++ ...||+||.+.+...|.+|++.++|.. +.|+++.+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 468999999999999999999764111111111 245899999999999999999999974 7788887654
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.60 E-value=0.15 Score=41.57 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=49.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 253 (258)
.-+.|.++|+.-. .-|..+|.+||.|.+.... ..-.+-+|+|.+.-+|.+|+. -||+.|+|..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 5677778877644 5677889999999765433 233578999999999999999 69999987654
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.47 E-value=0.022 Score=48.90 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=55.0
Q ss_pred eEEEcCCCCCCC-HHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 183 KVYVGNLAKTVT-SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 183 ~l~v~nl~~~~~-~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.|-+.-.|..+. .++|...|.+||.|..+.+-.. .-.|.|+|.+..+|.+|.. .++..|+||-|+|-|
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 344444555543 4889999999999999887652 3458999999999988887 799999999999988
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.38 E-value=0.034 Score=51.12 Aligned_cols=70 Identities=36% Similarity=0.335 Sum_probs=57.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc--CCeeeEEEeC
Q 025070 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL--EGQRIRVNKA 258 (258)
Q Consensus 183 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a 258 (258)
+..+.|.+-.++..-|..+|..||.|.+++.+++- ..|.|+|.+.+.|..|.++++|+.+ .|-..+|.+|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 33444555677778899999999999999988754 4699999999999999999999975 4777888776
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.14 E-value=0.083 Score=47.40 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=83.3
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 73 SVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 73 ~~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
+......+.-++||+|+...+..+-++.+...+|.|-++.... |+|..|.....+.+|+..++...++|..
T Consensus 32 p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred ccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 3445556778999999999999999999999999997665432 8999999999999999999999999998
Q ss_pred EEEEecCCcchhhhh--hhhhhccCCCCCC--CCeEEEcCCCCCCCHHHHHHHHhc
Q 025070 153 IKVNITEKPLVQVDL--SLLQAEDSNFVDS--PYKVYVGNLAKTVTSEMLKKCFSE 204 (258)
Q Consensus 153 l~v~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~l~v~nl~~~~~~~~l~~~f~~ 204 (258)
+.+............ ...........+. .+...|.++|....+......+.-
T Consensus 103 l~~~~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 103 LIENVDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred hhccchhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhc
Confidence 888764221111110 0001111111111 455677777777666555444433
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.36 E-value=0.52 Score=29.54 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 192 TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 192 ~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
.++-++++.-+..|+-. . |..|+ .| -||.|.+..+|.++....+|+.+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57789999999999633 2 33322 24 489999999999999999999998888765
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.18 E-value=0.2 Score=40.79 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=51.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee-EEEEec
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE-IKVNIT 158 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~-l~v~~~ 158 (258)
+.=|.|-++|+.-. ..|.++|++||+|.+.... .+..+-+|.|.+..+|++|| ..+|..|+|-. |-|+.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeec
Confidence 44577888877654 5677899999999766553 23348999999999999999 56888887643 344443
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.95 E-value=0.082 Score=48.78 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=64.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc--CCeeEEEEecC
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI--GGREIKVNITE 159 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~--~g~~l~v~~~~ 159 (258)
.+.++.|.+-+.+...|.-+|..||.|.+.+.+++.. .|.|+|...+.|..|+.+++|+.. -|-+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3455666666788999999999999999999988863 799999999999999999999986 58888898886
Q ss_pred Ccch
Q 025070 160 KPLV 163 (258)
Q Consensus 160 ~~~~ 163 (258)
....
T Consensus 373 ~~~~ 376 (1007)
T KOG4574|consen 373 TLPM 376 (1007)
T ss_pred cccc
Confidence 6544
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.77 E-value=0.68 Score=29.00 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 91 RNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 91 ~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
..++.++++..+..|+-. +| ..|. +| -||.|.+..+|+++....++..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I--~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RI--RDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eE--EecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 357889999999999533 34 3444 32 689999999999999999998887777654
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.57 E-value=0.72 Score=29.62 Aligned_cols=59 Identities=20% Similarity=0.454 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHhhCC-----CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 91 RNIDNDELTKIVQEHG-----AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 91 ~~~t~~~L~~~F~~~G-----~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
..++..+|..++..-+ .|-.+.+..+ |+||+-... .|+.+++.|++..+.|+++.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678899999998764 3456666433 799988765 788999999999999999999764
No 212
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.56 E-value=0.44 Score=42.14 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=54.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhh--CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCCee
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQE--HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG--TEIGGRE 152 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~--~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~--~~~~g~~ 152 (258)
+....+.|.++-||..+-+++++.+|+. +..+.+|.+-.+. -=||.|++..||+.|...|.. ..|-|+.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3345566888999999999999999986 7788888886554 379999999999999876532 2245555
Q ss_pred EEE
Q 025070 153 IKV 155 (258)
Q Consensus 153 l~v 155 (258)
|..
T Consensus 244 ImA 246 (684)
T KOG2591|consen 244 IMA 246 (684)
T ss_pred hhh
Confidence 443
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.37 E-value=0.15 Score=32.84 Aligned_cols=59 Identities=22% Similarity=0.426 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHhcCCCe-----EEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 191 KTVTSEMLKKCFSEKGQV-----LSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 191 ~~~~~~~l~~~f~~~G~v-----~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..++..+|..++...+.+ -.+.+.. .|+||+-.. +.|.+++..|++..+.|+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 357788888888776544 4455552 578998876 4788999999999999999999976
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.74 E-value=0.27 Score=44.28 Aligned_cols=69 Identities=26% Similarity=0.331 Sum_probs=60.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
.++..++||+|+-..+..+-++.+...+|.|.++.... |||+.|..+..+.+|+..++-..++|..+.+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 45567899999999999999999999999998776553 8999999999999999999999998876543
No 215
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=86.12 E-value=1.1 Score=33.11 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHhh-CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchhhhhhhh
Q 025070 92 NIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLL 170 (258)
Q Consensus 92 ~~t~~~L~~~F~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~ 170 (258)
..+...|.+.+.. .+....+.+..- ..++..++|.+.+++++++. .....++|..+.+..-.+....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~------ 95 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNP------ 95 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccc------
Confidence 4667777776665 343333333221 23689999999999999995 4556677777777655432211
Q ss_pred hhccCCCCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEee
Q 025070 171 QAEDSNFVDSPYKVYVGNLAKT-VTSEMLKKCFSEKGQVLSAKVLR 215 (258)
Q Consensus 171 ~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~i~~ 215 (258)
.........--+.|.|||.. .+++-++.+.+.+|.+..+....
T Consensus 96 --~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 96 --SEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred --cccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 11111122345778899998 66678889999999998877553
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.31 E-value=7.3 Score=35.03 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=59.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcC----CCeEEEEEeeCC----------CCCC---------------------
Q 025070 178 VDSPYKVYVGNLAKT-VTSEMLKKCFSEK----GQVLSAKVLRVP----------GTSK--------------------- 221 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~----G~v~~~~i~~~~----------~~~~--------------------- 221 (258)
....++|-|-||.|. +..++|.-+|..| |.|.+|.|+... -.|+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445678999999884 8889998888765 689999987511 1122
Q ss_pred ----------------CccEEEEEeCCHHHHHHHHHHhcCCccC--CeeeEEEe
Q 025070 222 ----------------SSGFGFVTFSSEEDAEAAISSLNNSLLE--GQRIRVNK 257 (258)
Q Consensus 222 ----------------~~~~~fV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 257 (258)
..-||.|+|.+.+.|.......+|..+. |..+.+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1127899999999999999999999986 44454443
No 217
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.29 E-value=4.4 Score=34.61 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=47.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCC-eeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGA-VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~-i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~ 141 (258)
-...|-|.++|.....+||...|+.||. --+|+++-|. .||-.|.+...|..|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 4467999999999999999999999974 4577787775 79999999999999994
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=76.90 E-value=2.2 Score=32.33 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=48.3
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCe-eeEE
Q 025070 182 YKVYVGNLAKTVTS-----EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ-RIRV 255 (258)
Q Consensus 182 ~~l~v~nl~~~~~~-----~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~-~l~v 255 (258)
..+.+.+++..+-. .....+|..|....-..+++ +.+..-|.|.+++.|..|..+++++.+.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 44555666554322 23356666665555445553 335577999999999999999999999988 7776
Q ss_pred EeC
Q 025070 256 NKA 258 (258)
Q Consensus 256 ~~a 258 (258)
-+|
T Consensus 85 yfa 87 (193)
T KOG4019|consen 85 YFA 87 (193)
T ss_pred EEc
Confidence 654
No 219
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=76.34 E-value=12 Score=24.68 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=43.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 025070 83 RVYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~ 142 (258)
.-|.-.++.+.+..+|++.++. || .|.+|+.+.-+ .+ ..=|||.+....+|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHh
Confidence 3455557899999999999998 67 77888887665 22 23599999988888776543
No 220
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=73.59 E-value=17 Score=23.55 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=42.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 025070 83 RVYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEK 142 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~ 142 (258)
.-|+-.++.+++..+|++.++. || .|.+++.+.-+ .+ ..-|||.+.....|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHHh
Confidence 3566668899999999999998 66 67777776655 22 23599999888777765433
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=69.94 E-value=8.8 Score=31.19 Aligned_cols=70 Identities=20% Similarity=0.359 Sum_probs=46.5
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHHhcCCCeEEEEEee-CC----CCCCC-----ccE---------EE
Q 025070 179 DSPYKVYVGNLAKT------------VTSEMLKKCFSEKGQVLSAKVLR-VP----GTSKS-----SGF---------GF 227 (258)
Q Consensus 179 ~~~~~l~v~nl~~~------------~~~~~l~~~f~~~G~v~~~~i~~-~~----~~~~~-----~~~---------~f 227 (258)
..+.++++.+||-. -+++-|+..|+.||.|..+.|+. |+ -+|.- +|| ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34467888888642 35678999999999999998875 22 12222 122 35
Q ss_pred EEeCCHHHHHHHHHHhcCCcc
Q 025070 228 VTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 228 V~f~~~~~A~~A~~~l~g~~~ 248 (258)
|.|.....-..|+..|.|+.+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 666666666777888887754
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=69.49 E-value=27 Score=22.60 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=42.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 025070 184 VYVGNLAKTVTSEMLKKCFSE-KG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243 (258)
Q Consensus 184 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l 243 (258)
-|...++...+..+|+..++. || .|..+.....+ ....-|||++...+.|...-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 444567899999999999987 55 57777777654 23445999999988888766543
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=68.84 E-value=1.9 Score=34.82 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=28.2
Q ss_pred CCceEEEcCCCCC------------CCHHHHHHHHhhCCCeeEeEEe
Q 025070 80 FARRVYIGNIPRN------------IDNDELTKIVQEHGAVEKAEVI 114 (258)
Q Consensus 80 ~~~~l~V~nl~~~------------~t~~~L~~~F~~~G~i~~~~~~ 114 (258)
...+||+.+||-. -+++-|+..|+.||.|..+.++
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3468999988853 3678899999999999988875
No 224
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.56 E-value=15 Score=30.18 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-------CCCCCccEEEEEeCCHHHHHHHH----HHhcC--Cc
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVP-------GTSKSSGFGFVTFSSEEDAEAAI----SSLNN--SL 247 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~-------~~~~~~~~~fV~f~~~~~A~~A~----~~l~g--~~ 247 (258)
.+.|.+.|+...++-..+...|-+||.|++++++.+. +.........+.|-+.+.+..-. +.|+. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3668889999999999999999999999999999754 11122345788998887764332 22221 24
Q ss_pred cCCeeeEEEe
Q 025070 248 LEGQRIRVNK 257 (258)
Q Consensus 248 ~~g~~l~v~~ 257 (258)
+....|+++|
T Consensus 95 L~S~~L~lsF 104 (309)
T PF10567_consen 95 LKSESLTLSF 104 (309)
T ss_pred cCCcceeEEE
Confidence 5555666554
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=67.28 E-value=30 Score=22.83 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=42.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 025070 184 VYVGNLAKTVTSEMLKKCFSE-KG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL 243 (258)
Q Consensus 184 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l 243 (258)
-|..-.+..++..++++.++. || .|.++.....+ ....-|||++....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 334457889999999999988 66 57788777654 33456999999988888765543
No 226
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=66.46 E-value=0.74 Score=40.76 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=56.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
...+.|+++|++++++-++|..+++.+.-+..+-+-..........+.||.|+---.-.-|+.+||++.+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 34567999999999999999999999877766666555544566778999999877777777777887764
No 227
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=65.58 E-value=15 Score=23.07 Aligned_cols=60 Identities=22% Similarity=0.322 Sum_probs=42.1
Q ss_pred HHHHHHHhcCC-CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 196 EMLKKCFSEKG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 196 ~~l~~~f~~~G-~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|.+.|...| .|..+.-+..+.++.+-..-||+.+...+. .+.++=+.++|..|+|+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecC
Confidence 56778888776 577777777666677777888998876552 2334455678888888753
No 228
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.29 E-value=32 Score=31.17 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=59.5
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHhhC----CCeeEeEEeeeCC----------CCC--------------------
Q 025070 77 PSEFARRVYIGNIPRN-IDNDELTKIVQEH----GAVEKAEVIYDKY----------TGR-------------------- 121 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~-~t~~~L~~~F~~~----G~i~~~~~~~~~~----------~~~-------------------- 121 (258)
....+++|-|-|+.++ +...+|.-+|+.| |.|.+|.|++... .|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3467789999999986 6899999999986 5888888865331 121
Q ss_pred -----------------cccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 122 -----------------SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 122 -----------------~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
..=||.|+|.+.+.|......++|..+...-..
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~ 299 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANK 299 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccce
Confidence 011799999999999999999999999644333
No 229
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.87 E-value=17 Score=22.33 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=15.8
Q ss_pred HHHHHHHHhhCCCeeEeEE
Q 025070 95 NDELTKIVQEHGAVEKAEV 113 (258)
Q Consensus 95 ~~~L~~~F~~~G~i~~~~~ 113 (258)
.++|+++|+.+|+|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999976655
No 230
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=63.50 E-value=17 Score=29.73 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=36.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCe-eEeEEeeeCCCCCcccEEEEEeCCHH
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAV-EKAEVIYDKYTGRSRRFAFVMMKTVE 134 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i-~~~~~~~~~~~~~~~g~afV~f~~~~ 134 (258)
...-|+++|||.++...||+.-+...|.+ .++.+ .-..|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 44569999999999999999999987744 23333 224567999998754
No 231
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=63.38 E-value=10 Score=28.76 Aligned_cols=70 Identities=19% Similarity=0.107 Sum_probs=45.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG--RSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~--~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
..+++|.. +.+...++|.++-+ |.+..+.+-+.. .+ ..+|-.||+|.+.++|...++. +...+....|..
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r 181 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKR 181 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHH
Confidence 44667766 33444444444444 688888775544 44 6789999999999999998854 444444444333
No 232
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=61.50 E-value=3.8 Score=35.01 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=52.8
Q ss_pred CCCceEEEcCCCCCCCHH--------HHHHHHhh--CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 025070 79 EFARRVYIGNIPRNIDND--------ELTKIVQE--HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~--------~L~~~F~~--~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~ 141 (258)
...+.+|+.++......+ ++..+|.. .+++..+++-++.....++|..|++|+..+.++++..
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345678888887766555 89999998 6788889998888778899999999999999999983
No 233
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=60.58 E-value=27 Score=24.47 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--cCCeeEEEEecCCcchhhh
Q 025070 89 IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTE--IGGREIKVNITEKPLVQVD 166 (258)
Q Consensus 89 l~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~--~~g~~l~v~~~~~~~~~~~ 166 (258)
||+.+ +.|-++|+.-|.|.++..+..-.+ ..|+-.++|.. .+|. |++.-......
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~s--- 67 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPAS--- 67 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCccc---
Confidence 56655 458899999999998877543211 12232344432 2343 55543321100
Q ss_pred hhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhc---CCCeEEEEEeeCCCCCCCccEEEEEeCCH
Q 025070 167 LSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE---KGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233 (258)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~---~G~v~~~~i~~~~~~~~~~~~~fV~f~~~ 233 (258)
-.....+..+.+. --|..++-.+++++|.. |..|..-.+.+|.-...+-..||..|...
T Consensus 68 ------V~i~gTPsgnnv~--F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 68 ------VRIQGTPSGNNVI--FPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ------EEEecCCCCCcee--cCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0011111112222 23778999999999986 55555444555433223344678777553
No 234
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=58.47 E-value=13 Score=31.76 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=48.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCC-eeEeEEeeeCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGA-VEKAEVIYDKYT--GRSRRFAFVMMKTVEDANAVIEKLNGTEI 148 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~-i~~~~~~~~~~~--~~~~g~afV~f~~~~~A~~ai~~l~~~~~ 148 (258)
-..+.|.+||+..++.++.+....+.. +....+...... ..-.+.|||.|...++.......++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 457899999999999999999888753 333333321101 11255799999999998888888887765
No 235
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=58.24 E-value=25 Score=22.14 Aligned_cols=62 Identities=16% Similarity=0.328 Sum_probs=44.8
Q ss_pred HHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCC
Q 025070 96 DELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160 (258)
Q Consensus 96 ~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 160 (258)
++|.+-|...| +|..+.-+....++.....-||+.....+...++ +=..+.+..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCC
Confidence 56788888888 7888888877767777778999988776633333 34557888888876543
No 236
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=56.65 E-value=30 Score=29.00 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=22.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 126 AFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 126 afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
|||.|++..+|+.|.+.+....- +.+.+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeC
Confidence 79999999999999985544432 44455554
No 237
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=54.20 E-value=28 Score=21.96 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=43.7
Q ss_pred HHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 96 DELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 96 ~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
++|.+-|...| ++..+.-+....++.+...-+|+.....+... .|+=..++|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 88888888887667677788888765543333 234456788888887654
No 238
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=51.45 E-value=2.4 Score=37.68 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=51.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~ 249 (258)
..+.++++|++++++-.+|..+|..+..+..+.+-.+..-......++|.|+.--....|+-+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3467899999999999999999999877766655443322233456899998877777777777776543
No 239
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=50.52 E-value=52 Score=27.08 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=36.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEeeCCCCCCCccEEEEEeCCHH
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQV-LSAKVLRVPGTSKSSGFGFVTFSSEE 234 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~i~~~~~~~~~~~~~fV~f~~~~ 234 (258)
..++++||+..+.-.||+..+.+.|.+ .++... .+.+-||+.|-+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 679999999999999999999987643 333333 35677999997753
No 240
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=50.49 E-value=18 Score=27.58 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=52.0
Q ss_pred ceEEEcCCCCCC-CHH----HHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe-eEEE
Q 025070 82 RRVYIGNIPRNI-DND----ELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGR-EIKV 155 (258)
Q Consensus 82 ~~l~V~nl~~~~-t~~----~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~-~l~v 155 (258)
.++.+.+++.++ +.. ...++|.+|.+..-.++++.. +..-|-|.+.+.|..|.-++++..+.|+ .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 456777776654 222 234456666666555555433 4678889999999999999999999888 7777
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
-++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7775543
No 241
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.38 E-value=38 Score=29.23 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=45.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQ-VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~ 242 (258)
.....|-|.++|.....+||...|+.||+ -..|.++- ..++|-.|.+...|..|+-.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-------dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-------DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-------cceeEEeecchHHHHHHhhc
Confidence 34577889999999999999999999854 33344443 35699999999999999884
No 242
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=47.39 E-value=33 Score=21.72 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=23.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 025070 224 GFGFVTFSSEEDAEAAISSLNNSLLEGQR 252 (258)
Q Consensus 224 ~~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 252 (258)
.+.++.|.+..+|.+|-+.|....+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 35899999999999999998877665544
No 243
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=46.41 E-value=78 Score=23.29 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=39.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 025070 83 RVYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai 140 (258)
+-|+--++...+..+|++.++. || .|..|..+.-+ .|.- =|||.+....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCce--EEEEEECCCCcHHHHH
Confidence 4555557889999999999998 66 67777777655 3322 5999998777655433
No 244
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=46.13 E-value=29 Score=24.47 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=25.0
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCH
Q 025070 183 KVYVGNLAKT---------VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233 (258)
Q Consensus 183 ~l~v~nl~~~---------~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~ 233 (258)
.+.|.|++.. .+.++|++.|..|..++ +....... ..+|++.|+|...
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 4555566443 35588999999997775 44444332 4578999999874
No 245
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=45.19 E-value=1.1e+02 Score=21.88 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=46.0
Q ss_pred CeEEEcCCCCC---CCHHHHHHHHhcCCC-eEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 182 YKVYVGNLAKT---VTSEMLKKCFSEKGQ-VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 182 ~~l~v~nl~~~---~~~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..|.|++.... .+-..+.+.+..-|- ++++.... +-..|+|.+.++-.+|.+.|....=++..|.+..
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~--------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN--------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 34555544333 566788888888762 44443332 3488999999999999998887665667776654
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 108 ~ 108 (127)
T PRK10629 108 D 108 (127)
T ss_pred C
Confidence 3
No 246
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=43.43 E-value=1.3e+02 Score=26.30 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=31.0
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhhC----CCeeEeEEeeeC
Q 025070 78 SEFARRVYIGNIPRN-IDNDELTKIVQEH----GAVEKAEVIYDK 117 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~-~t~~~L~~~F~~~----G~i~~~~~~~~~ 117 (258)
..++..|-|-|++++ +...+|.-.|+.| |.+..|.|.+..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 456678999999885 6888999999875 577778776654
No 247
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.03 E-value=3.7 Score=35.51 Aligned_cols=78 Identities=5% Similarity=-0.034 Sum_probs=62.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCC
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 160 (258)
..-++..+|...++.++.-+|..||-|..+..-+..+.|...-.+|+.-.. .+|+.+|..+.-..+.|..+++.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788899999999999999999999988887777677777788988764 456778877666667788888877643
No 248
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=39.27 E-value=34 Score=27.30 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAE 112 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~ 112 (258)
.......++|+-|+|..+|++-|.++.+++|-+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3445567899999999999999999999998665443
No 249
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.44 E-value=91 Score=20.38 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=21.6
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCc
Q 025070 122 SRRFAFVMMKTVEDANAVIEKLNGTE 147 (258)
Q Consensus 122 ~~g~afV~f~~~~~A~~ai~~l~~~~ 147 (258)
.+||-||+=.+..++..|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 68999999999999999997765543
No 250
>PRK11901 hypothetical protein; Reviewed
Probab=35.91 E-value=1.2e+02 Score=25.64 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEE--EeCCHHHHHHHHHHhCC
Q 025070 93 IDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFV--MMKTVEDANAVIEKLNG 145 (258)
Q Consensus 93 ~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV--~f~~~~~A~~ai~~l~~ 145 (258)
-.++.|..|...++ +..++++.-..+|+.- |..| .|.+.++|..|+..|..
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 45788888888875 4556665544344432 3333 48999999999988753
No 251
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=34.24 E-value=34 Score=18.51 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHhhCC
Q 025070 91 RNIDNDELTKIVQEHG 106 (258)
Q Consensus 91 ~~~t~~~L~~~F~~~G 106 (258)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998764
No 252
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=33.94 E-value=45 Score=22.59 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHh
Q 025070 123 RRFAFVMMKTVEDANAVIEKL 143 (258)
Q Consensus 123 ~g~afV~f~~~~~A~~ai~~l 143 (258)
--|.|++|.+.+.++.|.+.+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 348999999999998888753
No 253
>PF14893 PNMA: PNMA
Probab=33.35 E-value=56 Score=27.75 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=34.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh-CCCeeEeEEeeeCC-CCCcccEEEEEeCCH
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKY-TGRSRRFAFVMMKTV 133 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~-~G~i~~~~~~~~~~-~~~~~g~afV~f~~~ 133 (258)
...+.|-|.+||.+|++++|.+.+.. +-++-..++..... ...+..-|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 44578999999999999999998765 32333333321110 111234788888743
No 254
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=32.96 E-value=64 Score=19.68 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=14.1
Q ss_pred EeEEeeeCCCCCcccEEEEEeCC
Q 025070 110 KAEVIYDKYTGRSRRFAFVMMKT 132 (258)
Q Consensus 110 ~~~~~~~~~~~~~~g~afV~f~~ 132 (258)
.++++.+. ...+.|++++.|++
T Consensus 19 ~arllLnr-Rps~~G~~WiKyED 40 (60)
T PF06613_consen 19 PARLLLNR-RPSSEGLAWIKYED 40 (60)
T ss_dssp EEEE-TTB---SSTTEEEEEETT
T ss_pred hhhhhhcc-CCCcCCeEEEEEcc
Confidence 34555554 55678999999987
No 255
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.65 E-value=2e+02 Score=21.16 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 025070 183 KVYVGNLAKTVTSEMLKKCFSE-KG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241 (258)
Q Consensus 183 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~ 241 (258)
+-++.-++...+..+|++.++. |+ .|..+..+..+. ...-|||++....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 3445567889999999999987 65 467777776442 23459999987777655443
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.67 E-value=65 Score=27.69 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=45.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEeeCCC--CCCCccEEEEEeCCHHHHHHHHHHhcCCcc
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQ-VLSAKVLRVPG--TSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~i~~~~~--~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~ 248 (258)
..+.|..||+.++++++.+...++-. +.......... ...-.+.+||.|..+++...-...++|..+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 56889999999999999988887632 22222221110 011245689999999997777777777654
No 257
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=31.50 E-value=1.7e+02 Score=19.96 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHhh-CCCeeEeEEeeeCCC----CCcccEEEEEeCCHHHHHH
Q 025070 92 NIDNDELTKIVQE-HGAVEKAEVIYDKYT----GRSRRFAFVMMKTVEDANA 138 (258)
Q Consensus 92 ~~t~~~L~~~F~~-~G~i~~~~~~~~~~~----~~~~g~afV~f~~~~~A~~ 138 (258)
..+-.+|++-+.. |+.=.+..++....+ |.+.|||.| |.+.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 4577888886665 663334444333323 456667776 566666554
No 258
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.62 E-value=1.6e+02 Score=19.57 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMK 131 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~ 131 (258)
...-|||++++..+-+.-...+.+..+.-.-+.+..+. + ..||+|-..-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEeC
Confidence 34569999998887766555555545544444444433 2 7789988763
No 259
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.60 E-value=11 Score=32.76 Aligned_cols=71 Identities=7% Similarity=-0.084 Sum_probs=47.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 183 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
..++..+|...++.++...|+-||.|..+...+.-+.|...-.+|+.-.+ ++|..+++.+.-..+.|..++
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r 75 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDR 75 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhh
Confidence 34567788899999999999999999888877666566666677887665 334444444433333333333
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=28.30 E-value=32 Score=30.90 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=47.5
Q ss_pred EEcCCCCCCCHHHHHHHHhh-CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcch
Q 025070 85 YIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV 163 (258)
Q Consensus 85 ~V~nl~~~~t~~~L~~~F~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~ 163 (258)
-..++|..+....+...+.. ++...+- +. ...-.+++++.|++.+.+.+|+..++|..+.+..+++....+...
T Consensus 29 ~~e~~~~~~~q~~~~k~~~~~~~~~~s~---tk--~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 29 SIEMIPTFIGQKQLNKVLLKILRDVKSK---TK--LPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVG 103 (534)
T ss_pred ceeccCchhhhhHHHhhhhhhccccccc---CC--CCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccc
Confidence 34455566655555544433 3322211 11 112345999999999999999999999999888888876654433
No 261
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=28.14 E-value=18 Score=22.65 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 025070 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244 (258)
Q Consensus 196 ~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~ 244 (258)
+++.+.|..++....+.-+ .+|..|++.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHHhh
Confidence 5777777765443332212 28999999999988887654
No 262
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=27.73 E-value=2e+02 Score=20.37 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHhh-CCCeeEeEE----eeeCCCCCcccEEEEEeCCHHHHHH
Q 025070 92 NIDNDELTKIVQE-HGAVEKAEV----IYDKYTGRSRRFAFVMMKTVEDANA 138 (258)
Q Consensus 92 ~~t~~~L~~~F~~-~G~i~~~~~----~~~~~~~~~~g~afV~f~~~~~A~~ 138 (258)
+++.++|++-+.. |-.-.+..+ -...-.|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5678899987776 322222222 223334788889988 555555543
No 263
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=26.44 E-value=2.1e+02 Score=21.11 Aligned_cols=33 Identities=6% Similarity=0.061 Sum_probs=24.8
Q ss_pred eeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025070 108 VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145 (258)
Q Consensus 108 i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~ 145 (258)
|.++.++.. ..||.||+....+++..+++.+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 555555433 689999999988889999976654
No 264
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=26.39 E-value=24 Score=29.80 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=39.3
Q ss_pred HHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 025070 95 NDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT 146 (258)
Q Consensus 95 ~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~ 146 (258)
...+.+++.+.|.|..-.|.+-. +.|.+||-.-..++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 57888888999988776666544 5688999999999999999988764
No 265
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=26.17 E-value=1.8e+02 Score=18.39 Aligned_cols=43 Identities=33% Similarity=0.483 Sum_probs=30.3
Q ss_pred HHHHHHHhhCCCeeEeEEeeeCCCCCc-ccEEEEEeCCHHHHHHHHHHhC
Q 025070 96 DELTKIVQEHGAVEKAEVIYDKYTGRS-RRFAFVMMKTVEDANAVIEKLN 144 (258)
Q Consensus 96 ~~L~~~F~~~G~i~~~~~~~~~~~~~~-~g~afV~f~~~~~A~~ai~~l~ 144 (258)
.++.+.+..+| +....+ +|.. -++.|+-+.+.++++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~-----sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM-----SGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE-----ETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec-----CCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777778888 445555 4432 3478888889999988887653
No 266
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=24.32 E-value=1.9e+02 Score=18.11 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=29.8
Q ss_pred CHHHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeC-CHHHHHHHHHHhCC
Q 025070 94 DNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMK-TVEDANAVIEKLNG 145 (258)
Q Consensus 94 t~~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~-~~~~A~~ai~~l~~ 145 (258)
.-.++.+.|+.+| .+.++.-.+.. .+...=.-||++. ..++.++|++.+..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~-~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSR-RNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCC-CCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 4577888888886 45444433322 1222225678887 45556778877654
No 267
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=23.99 E-value=74 Score=25.46 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=28.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEe
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVL 214 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~ 214 (258)
..+||+-|+|...+++-|..+...+|.++.+.+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 3689999999999999999999999877665443
No 268
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=23.33 E-value=3.2e+02 Score=20.49 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=27.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeee
Q 025070 83 RVYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYD 116 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~ 116 (258)
+.|+-.++.+++-.+|++.++. || .|..|+.+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 4677778999999999999998 66 6777777653
No 269
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=22.11 E-value=2.1e+02 Score=17.74 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=32.9
Q ss_pred CHHHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCC---HHHHHHHHHHhCC
Q 025070 94 DNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKT---VEDANAVIEKLNG 145 (258)
Q Consensus 94 t~~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~---~~~A~~ai~~l~~ 145 (258)
.-.++.+.|+.+| .+.++.-.+.. .....-..||++.. ....+.+++.+..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4578888999987 67776444333 22333467888874 5666777776643
No 270
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=21.28 E-value=3e+02 Score=19.94 Aligned_cols=46 Identities=9% Similarity=0.279 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHhh-CC-CeeEeEEeeeCC----CCCcccEEEEEeCCHHHHHH
Q 025070 92 NIDNDELTKIVQE-HG-AVEKAEVIYDKY----TGRSRRFAFVMMKTVEDANA 138 (258)
Q Consensus 92 ~~t~~~L~~~F~~-~G-~i~~~~~~~~~~----~~~~~g~afV~f~~~~~A~~ 138 (258)
..+-.+|++-+.. |+ .=.+..++.... .|.+.|||.| |.+.+.|.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4577888887766 55 222333322221 2566777777 555555443
No 271
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.89 E-value=49 Score=28.61 Aligned_cols=60 Identities=20% Similarity=0.119 Sum_probs=45.9
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHHhc--CCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 025070 182 YKVYVGNLAKTVTS--------EMLKKCFSE--KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241 (258)
Q Consensus 182 ~~l~v~nl~~~~~~--------~~l~~~f~~--~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~ 241 (258)
+.+|+.+++..... +++...|.+ ++.+..+...++-.....+|-.|++|+....|.++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 56677777665443 589999999 6777777777766566778889999999999988764
No 272
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.24 E-value=1.4e+02 Score=24.40 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=25.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEE
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEV 113 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~ 113 (258)
.....|+|||++++..-|..++...-.+....+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 356889999999999999999887655544433
No 273
>PRK11901 hypothetical protein; Reviewed
Probab=20.14 E-value=4.5e+02 Score=22.35 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=39.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEE--EEEeCCHHHHHHHHHHhcC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFG--FVTFSSEEDAEAAISSLNN 245 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~--fV~f~~~~~A~~A~~~l~g 245 (258)
...+|.+..+ -.++.|..+..+++ +..++++.-...|. ..|. |=.|.+.++|..|+..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3356665543 45788888888875 45555554332333 2343 4578999999999998754
Done!