Query 025070
Match_columns 258
No_of_seqs 184 out of 2012
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 03:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.5E-38 5.1E-43 250.8 21.4 169 76-258 10-178 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 3E-38 1E-42 239.2 20.9 164 82-258 1-164 (166)
3 1fxl_A Paraneoplastic encephal 100.0 7.8E-38 2.7E-42 237.2 22.6 164 81-258 2-167 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 4.7E-38 1.6E-42 238.8 21.4 165 80-258 2-168 (168)
5 2ghp_A U4/U6 snRNA-associated 100.0 4.9E-39 1.7E-43 265.4 17.2 229 16-258 52-288 (292)
6 3smz_A Protein raver-1, ribonu 100.0 5.3E-38 1.8E-42 258.3 19.5 228 14-258 31-261 (284)
7 1l3k_A Heterogeneous nuclear r 100.0 3.1E-37 1.1E-41 240.1 21.5 174 75-258 7-180 (196)
8 2qfj_A FBP-interacting repress 100.0 3.6E-37 1.2E-41 243.3 21.5 177 79-258 26-202 (216)
9 2cjk_A Nuclear polyadenylated 100.0 4.2E-37 1.4E-41 233.4 14.9 162 80-258 2-163 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 6.5E-36 2.2E-40 228.4 21.0 165 80-258 2-174 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 4.8E-35 1.6E-39 223.0 18.9 158 80-258 3-171 (172)
12 2yh0_A Splicing factor U2AF 65 100.0 8.1E-36 2.8E-40 232.4 14.0 172 80-258 3-191 (198)
13 1fje_B Nucleolin RBD12, protei 100.0 3.5E-35 1.2E-39 224.5 14.7 164 76-258 8-171 (175)
14 3tyt_A Heterogeneous nuclear r 100.0 2E-34 6.8E-39 225.2 17.7 172 80-258 3-204 (205)
15 2adc_A Polypyrimidine tract-bi 100.0 1.6E-33 5.5E-38 224.4 20.5 173 76-258 29-225 (229)
16 3pgw_A U1-A; protein-RNA compl 100.0 2.8E-33 9.5E-38 229.9 22.4 174 77-258 5-280 (282)
17 3smz_A Protein raver-1, ribonu 100.0 1.1E-32 3.9E-37 226.4 21.0 152 80-258 21-172 (284)
18 1qm9_A Polypyrimidine tract-bi 100.0 2.6E-33 8.9E-38 218.4 15.8 168 81-258 3-194 (198)
19 3sde_A Paraspeckle component 1 100.0 4E-32 1.4E-36 220.5 20.7 158 74-258 15-176 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 4.5E-32 1.5E-36 223.7 18.2 160 74-258 34-194 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 4.4E-25 1.5E-29 165.6 13.6 146 110-258 2-147 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.9E-24 6.5E-29 153.3 10.6 109 80-196 4-112 (115)
23 2i2y_A Fusion protein consists 99.9 1.8E-23 6.3E-28 155.4 11.3 134 119-258 9-145 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 4.3E-23 1.5E-27 142.2 11.2 82 79-160 17-98 (99)
25 3md3_A Nuclear and cytoplasmic 99.9 1.4E-22 4.7E-27 152.8 12.0 145 15-159 10-165 (166)
26 4f02_A Polyadenylate-binding p 99.9 8.7E-23 3E-27 160.5 8.8 140 22-163 32-183 (213)
27 4fxv_A ELAV-like protein 1; RN 99.9 7E-22 2.4E-26 136.1 11.6 80 179-258 17-96 (99)
28 2qfj_A FBP-interacting repress 99.9 3E-22 1E-26 157.6 10.6 148 16-163 39-207 (216)
29 3s8s_A Histone-lysine N-methyl 99.9 1E-21 3.4E-26 137.8 11.6 86 79-164 4-89 (110)
30 1l3k_A Heterogeneous nuclear r 99.9 3.7E-22 1.3E-26 154.7 9.6 143 21-164 29-186 (196)
31 2lxi_A RNA-binding protein 10; 99.9 2.1E-22 7.3E-27 136.6 6.9 83 81-163 1-85 (91)
32 1b7f_A Protein (SXL-lethal pro 99.9 8.9E-22 3.1E-26 148.8 9.8 145 14-158 12-168 (168)
33 2lkz_A RNA-binding protein 5; 99.9 8.7E-22 3E-26 134.2 8.5 84 77-160 5-94 (95)
34 1fxl_A Paraneoplastic encephal 99.9 1.2E-21 4E-26 147.9 9.5 145 14-158 11-167 (167)
35 2cjk_A Nuclear polyadenylated 99.9 2.1E-22 7E-27 152.2 5.1 145 15-161 13-166 (167)
36 3bs9_A Nucleolysin TIA-1 isofo 99.9 5.3E-21 1.8E-25 128.7 10.7 83 79-161 4-86 (87)
37 3nmr_A Cugbp ELAV-like family 99.9 1.1E-21 3.8E-26 149.1 8.1 145 14-159 12-175 (175)
38 3s8s_A Histone-lysine N-methyl 99.9 8.1E-21 2.8E-25 133.2 11.6 80 179-258 4-83 (110)
39 2cqc_A Arginine/serine-rich sp 99.8 1.2E-20 4.1E-25 129.1 12.1 87 74-160 8-94 (95)
40 2jrs_A RNA-binding protein 39; 99.8 1E-20 3.5E-25 132.4 11.9 90 72-161 17-106 (108)
41 3md1_A Nuclear and cytoplasmic 99.8 9.2E-21 3.2E-25 126.3 11.0 80 82-161 2-81 (83)
42 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.5E-21 2.6E-25 127.4 10.5 82 78-159 4-85 (85)
43 2x1f_A MRNA 3'-END-processing 99.8 1.2E-20 4.1E-25 129.4 11.7 86 80-165 1-86 (96)
44 2dgo_A Cytotoxic granule-assoc 99.8 2E-20 6.9E-25 132.6 13.3 91 74-164 8-98 (115)
45 2la6_A RNA-binding protein FUS 99.8 1.3E-20 4.3E-25 130.0 11.9 86 74-159 6-99 (99)
46 2g4b_A Splicing factor U2AF 65 99.8 4.2E-21 1.4E-25 145.7 10.1 144 15-158 14-171 (172)
47 1whw_A Hypothetical protein ri 99.8 9.3E-21 3.2E-25 130.7 10.9 87 77-163 4-90 (99)
48 2do4_A Squamous cell carcinoma 99.8 1.8E-20 6.2E-25 129.4 12.3 86 76-162 12-97 (100)
49 2e5h_A Zinc finger CCHC-type a 99.8 1.6E-20 5.6E-25 128.2 11.8 85 75-159 10-94 (94)
50 1x5u_A Splicing factor 3B subu 99.8 1.3E-20 4.5E-25 131.3 11.6 90 74-163 8-97 (105)
51 3p5t_L Cleavage and polyadenyl 99.8 2.5E-21 8.4E-26 131.2 7.0 82 82-163 2-85 (90)
52 3lqv_A PRE-mRNA branch site pr 99.8 6.8E-21 2.3E-25 135.0 9.6 106 77-207 4-109 (115)
53 2dnz_A Probable RNA-binding pr 99.8 1.9E-20 6.6E-25 128.0 11.6 85 79-163 3-87 (95)
54 2dgs_A DAZ-associated protein 99.8 1.9E-20 6.4E-25 129.1 11.4 87 76-163 5-91 (99)
55 2cq0_A Eukaryotic translation 99.8 1.4E-20 4.8E-25 130.7 10.8 89 75-163 9-97 (103)
56 2cpz_A CUG triplet repeat RNA- 99.8 1.8E-20 6.2E-25 132.8 11.5 88 76-163 20-107 (115)
57 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.4E-20 4.6E-25 130.6 10.2 88 76-163 7-94 (102)
58 1p27_B RNA-binding protein 8A; 99.8 1.6E-20 5.4E-25 131.2 10.4 86 76-161 18-103 (106)
59 1x5s_A Cold-inducible RNA-bind 99.8 2E-20 6.7E-25 129.8 10.7 88 76-163 7-94 (102)
60 2cph_A RNA binding motif prote 99.8 3.4E-20 1.2E-24 129.7 12.0 90 74-163 8-99 (107)
61 2lkz_A RNA-binding protein 5; 99.8 4E-21 1.4E-25 130.9 6.9 78 181-258 9-92 (95)
62 2dnm_A SRP46 splicing factor; 99.8 1.6E-20 5.4E-25 130.5 10.0 88 76-163 8-95 (103)
63 1x4h_A RNA-binding protein 28; 99.8 3.7E-20 1.3E-24 130.4 12.0 89 75-163 9-103 (111)
64 2div_A TRNA selenocysteine ass 99.8 2.1E-20 7E-25 128.9 10.4 87 76-162 4-95 (99)
65 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.1E-20 7.2E-25 140.9 11.4 131 128-258 11-149 (165)
66 2dnh_A Bruno-like 5, RNA bindi 99.8 4.1E-20 1.4E-24 128.8 12.0 86 77-163 11-99 (105)
67 1x5t_A Splicing factor 3B subu 99.8 1.8E-20 6E-25 128.5 9.9 85 79-163 3-88 (96)
68 1oo0_B CG8781-PA, drosophila Y 99.8 1.9E-20 6.5E-25 131.6 10.0 87 76-162 21-107 (110)
69 2ywk_A Putative RNA-binding pr 99.8 2.6E-20 8.8E-25 127.4 10.3 84 76-160 11-94 (95)
70 2yh0_A Splicing factor U2AF 65 99.8 8.9E-21 3E-25 147.1 8.8 150 13-162 12-195 (198)
71 3ns6_A Eukaryotic translation 99.8 5.1E-21 1.7E-25 132.1 6.5 84 79-162 4-94 (100)
72 2lxi_A RNA-binding protein 10; 99.8 3.5E-21 1.2E-25 130.6 5.6 77 182-258 2-80 (91)
73 2dgp_A Bruno-like 4, RNA bindi 99.8 3.3E-20 1.1E-24 129.5 10.7 89 75-163 7-98 (106)
74 2d9p_A Polyadenylate-binding p 99.8 4E-20 1.4E-24 128.4 11.0 88 74-163 8-95 (103)
75 2lea_A Serine/arginine-rich sp 99.8 4.3E-21 1.5E-25 139.7 6.3 119 125-258 6-124 (135)
76 2kxn_B Transformer-2 protein h 99.8 3E-20 1E-24 134.1 10.3 88 75-162 40-127 (129)
77 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.3E-20 1.5E-24 123.6 10.3 80 179-258 5-84 (85)
78 3s7r_A Heterogeneous nuclear r 99.8 5.2E-20 1.8E-24 123.8 10.7 82 76-158 6-87 (87)
79 2cpf_A RNA binding motif prote 99.8 2.6E-20 9E-25 128.1 9.3 85 79-163 3-90 (98)
80 2cqp_A RNA-binding protein 12; 99.8 4.1E-20 1.4E-24 127.1 10.3 85 77-161 11-95 (98)
81 1p1t_A Cleavage stimulation fa 99.8 2.3E-20 7.8E-25 129.9 9.0 87 79-165 6-92 (104)
82 1s79_A Lupus LA protein; RRM, 99.8 2.8E-20 9.7E-25 128.8 9.3 82 78-161 8-89 (103)
83 2cpe_A RNA-binding protein EWS 99.8 6.8E-20 2.3E-24 129.4 11.3 88 76-163 10-105 (113)
84 2khc_A Testis-specific RNP-typ 99.8 5.1E-20 1.7E-24 131.1 10.6 85 75-159 34-118 (118)
85 2fy1_A RNA-binding motif prote 99.8 7E-20 2.4E-24 129.8 11.0 86 77-163 3-88 (116)
86 2dng_A Eukaryotic translation 99.8 1E-19 3.5E-24 126.3 11.6 87 75-163 9-95 (103)
87 2cq3_A RNA-binding protein 9; 99.8 1.8E-19 6.1E-24 125.1 12.8 88 74-163 8-95 (103)
88 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.5E-19 5.3E-24 125.4 12.4 88 74-163 8-95 (103)
89 2cqd_A RNA-binding region cont 99.8 9.2E-20 3.2E-24 129.4 11.5 88 74-162 10-97 (116)
90 3md1_A Nuclear and cytoplasmic 99.8 1E-19 3.5E-24 121.2 11.0 77 182-258 2-78 (83)
91 4a8x_A RNA-binding protein wit 99.8 4.9E-20 1.7E-24 124.2 9.4 83 80-162 3-86 (88)
92 1wi8_A EIF-4B, eukaryotic tran 99.8 8.8E-20 3E-24 126.9 10.8 87 75-163 9-96 (104)
93 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-19 4.2E-24 123.8 11.4 81 178-258 13-93 (94)
94 3ucg_A Polyadenylate-binding p 99.8 7E-20 2.4E-24 123.7 10.0 80 81-161 6-85 (89)
95 1u6f_A Tcubp1, RNA-binding pro 99.8 1.2E-19 4.2E-24 132.9 12.0 90 74-163 35-124 (139)
96 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.3E-20 3.2E-24 122.5 10.4 79 180-258 5-83 (87)
97 2do0_A HnRNP M, heterogeneous 99.8 2.6E-19 8.8E-24 126.6 13.0 87 76-163 10-96 (114)
98 2kn4_A Immunoglobulin G-bindin 99.8 4.7E-20 1.6E-24 138.1 9.7 87 76-162 65-151 (158)
99 3ulh_A THO complex subunit 4; 99.8 1.3E-19 4.3E-24 126.8 11.2 82 77-159 25-106 (107)
100 2dnz_A Probable RNA-binding pr 99.8 1.8E-19 6.1E-24 123.2 11.7 80 179-258 3-82 (95)
101 2hvz_A Splicing factor, argini 99.8 2.3E-20 8E-25 129.1 7.3 100 82-190 1-100 (101)
102 2cqc_A Arginine/serine-rich sp 99.8 9.7E-20 3.3E-24 124.5 10.3 81 178-258 12-92 (95)
103 2dh8_A DAZ-associated protein 99.8 6.3E-20 2.1E-24 127.9 9.5 88 75-163 10-97 (105)
104 2err_A Ataxin-2-binding protei 99.8 8E-20 2.7E-24 128.1 10.0 88 72-161 20-107 (109)
105 3n9u_C Cleavage and polyadenyl 99.8 7.8E-20 2.7E-24 136.1 10.4 84 80-163 54-139 (156)
106 2la6_A RNA-binding protein FUS 99.8 1.5E-19 5E-24 124.6 11.1 82 177-258 9-98 (99)
107 2ek1_A RNA-binding protein 12; 99.8 4.3E-20 1.5E-24 126.3 8.4 82 78-159 12-93 (95)
108 2dhg_A TRNA selenocysteine ass 99.8 6.9E-20 2.4E-24 127.4 9.5 86 77-163 5-92 (104)
109 2x1f_A MRNA 3'-END-processing 99.8 1.5E-19 5E-24 123.9 11.0 78 181-258 2-79 (96)
110 1sjq_A Polypyrimidine tract-bi 99.8 5.8E-20 2E-24 126.4 8.8 81 77-163 12-94 (105)
111 2dgx_A KIAA0430 protein; RRM d 99.8 1.5E-19 5E-24 123.9 10.6 83 77-162 5-91 (96)
112 2rs2_A Musashi-1, RNA-binding 99.8 8.4E-20 2.9E-24 128.0 9.6 87 75-162 19-105 (109)
113 2mss_A Protein (musashi1); RNA 99.8 4.3E-20 1.5E-24 120.6 7.5 75 83-158 1-75 (75)
114 2dgv_A HnRNP M, heterogeneous 99.8 1.5E-19 5E-24 122.9 10.5 84 77-162 4-87 (92)
115 2kt5_A RNA and export factor-b 99.8 5E-19 1.7E-23 127.0 13.5 86 76-162 30-115 (124)
116 1x4e_A RNA binding motif, sing 99.8 1.9E-20 6.5E-25 125.4 5.6 81 79-159 3-83 (85)
117 1whw_A Hypothetical protein ri 99.8 2.5E-19 8.4E-24 123.5 11.3 80 179-258 6-85 (99)
118 2wbr_A GW182, gawky, LD47780P; 99.8 1.9E-19 6.5E-24 118.3 10.0 75 79-159 5-79 (89)
119 2m2b_A RNA-binding protein 10; 99.8 5E-20 1.7E-24 133.6 8.0 88 75-163 17-110 (131)
120 2dgw_A Probable RNA-binding pr 99.8 2.6E-19 9.1E-24 121.3 11.1 83 77-162 6-88 (91)
121 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.8E-20 1.3E-24 127.8 6.9 86 74-161 12-98 (100)
122 2lea_A Serine/arginine-rich sp 99.8 5.4E-20 1.8E-24 133.9 7.9 89 75-163 41-129 (135)
123 3p5t_L Cleavage and polyadenyl 99.8 4.5E-20 1.6E-24 124.9 7.0 77 182-258 2-80 (90)
124 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.8E-19 9.4E-24 131.1 11.6 85 74-158 56-140 (140)
125 2cqg_A TDP-43, TAR DNA-binding 99.8 5E-19 1.7E-23 122.8 12.3 87 75-163 9-95 (103)
126 2cq4_A RNA binding motif prote 99.8 4.9E-20 1.7E-24 130.4 7.2 85 77-162 21-105 (114)
127 2dgs_A DAZ-associated protein 99.8 4.8E-19 1.7E-23 122.0 12.0 80 178-258 7-86 (99)
128 3ex7_B RNA-binding protein 8A; 99.8 1.6E-19 5.3E-24 130.1 9.9 88 76-163 17-104 (126)
129 2dgo_A Cytotoxic granule-assoc 99.8 3.4E-19 1.2E-23 126.2 11.5 82 177-258 11-92 (115)
130 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.8E-20 2E-24 120.6 6.9 76 82-158 1-76 (77)
131 3ns6_A Eukaryotic translation 99.8 6.7E-20 2.3E-24 126.5 7.5 78 181-258 6-90 (100)
132 1p27_B RNA-binding protein 8A; 99.8 3.2E-19 1.1E-23 124.5 11.1 80 179-258 21-100 (106)
133 1x5u_A Splicing factor 3B subu 99.8 3.1E-19 1.1E-23 124.3 10.9 81 178-258 12-92 (105)
134 2cpy_A RNA-binding protein 12; 99.8 1.9E-19 6.6E-24 127.2 9.9 87 76-164 10-97 (114)
135 2do4_A Squamous cell carcinoma 99.8 4.3E-19 1.5E-23 122.5 11.4 80 178-258 14-93 (100)
136 2db1_A Heterogeneous nuclear r 99.8 2.5E-19 8.6E-24 127.3 10.4 85 76-162 12-99 (118)
137 2jrs_A RNA-binding protein 39; 99.8 2.9E-19 1E-23 125.0 10.5 82 177-258 22-103 (108)
138 2dnm_A SRP46 splicing factor; 99.8 2.3E-19 7.9E-24 124.5 9.8 81 178-258 10-90 (103)
139 2cq0_A Eukaryotic translation 99.8 2.8E-19 9.6E-24 124.1 10.2 81 178-258 12-92 (103)
140 1x5s_A Cold-inducible RNA-bind 99.8 2.6E-19 9E-24 124.0 9.7 81 178-258 9-89 (102)
141 2cpi_A CCR4-NOT transcription 99.8 2.5E-19 8.7E-24 126.0 9.7 87 76-162 10-102 (111)
142 3tyt_A Heterogeneous nuclear r 99.8 1.9E-19 6.6E-24 140.3 10.0 142 15-158 15-204 (205)
143 2cpz_A CUG triplet repeat RNA- 99.8 3.1E-19 1.1E-23 126.4 10.2 81 178-258 22-102 (115)
144 1x4a_A Splicing factor, argini 99.8 8.7E-19 3E-23 122.9 12.3 85 76-163 17-101 (109)
145 2cq1_A PTB-like protein L; RRM 99.8 6.1E-19 2.1E-23 121.3 11.2 82 76-163 10-93 (101)
146 1x5t_A Splicing factor 3B subu 99.8 2.2E-19 7.4E-24 123.0 8.9 80 179-258 3-83 (96)
147 2cph_A RNA binding motif prote 99.8 5.6E-19 1.9E-23 123.4 11.2 81 178-258 12-94 (107)
148 2a3j_A U1 small nuclear ribonu 99.8 4.2E-19 1.4E-23 127.3 10.7 85 76-163 24-112 (127)
149 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.4E-19 8.2E-24 124.2 9.1 81 178-258 9-89 (102)
150 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.8E-19 2E-23 131.8 11.9 88 76-163 34-121 (156)
151 2dis_A Unnamed protein product 99.8 3E-19 1E-23 125.2 9.8 85 79-163 6-94 (109)
152 4f25_A Polyadenylate-binding p 99.8 3.4E-19 1.2E-23 126.1 10.1 76 181-258 5-80 (115)
153 2wbr_A GW182, gawky, LD47780P; 99.8 4E-19 1.4E-23 116.8 9.6 73 180-258 6-78 (89)
154 3r27_A HnRNP L, heterogeneous 99.8 4.2E-19 1.4E-23 120.9 10.1 79 77-161 17-97 (100)
155 1oo0_B CG8781-PA, drosophila Y 99.8 4.8E-19 1.7E-23 124.4 10.7 81 178-258 23-103 (110)
156 1wg5_A Heterogeneous nuclear r 99.8 4.1E-19 1.4E-23 123.4 10.2 85 76-162 10-95 (104)
157 2ki2_A SS-DNA binding protein 99.8 3.9E-20 1.3E-24 125.2 4.8 81 82-163 2-82 (90)
158 2div_A TRNA selenocysteine ass 99.8 3.2E-19 1.1E-23 122.9 9.5 81 178-258 6-91 (99)
159 3s7r_A Heterogeneous nuclear r 99.8 6E-19 2E-23 118.6 10.6 79 179-258 9-87 (87)
160 2mss_A Protein (musashi1); RNA 99.8 1.5E-19 5.3E-24 117.9 7.4 75 183-258 1-75 (75)
161 2khc_A Testis-specific RNP-typ 99.8 3.1E-19 1.1E-23 127.0 9.5 82 177-258 36-117 (118)
162 2ywk_A Putative RNA-binding pr 99.8 4.7E-19 1.6E-23 121.1 10.1 79 179-258 14-92 (95)
163 2kxn_B Transformer-2 protein h 99.8 4.9E-19 1.7E-23 127.7 10.5 82 177-258 42-123 (129)
164 1x4b_A Heterogeneous nuclear r 99.8 2.2E-19 7.6E-24 127.4 8.4 85 78-163 24-108 (116)
165 2nlw_A Eukaryotic translation 99.8 3.3E-19 1.1E-23 124.1 9.2 84 76-161 10-100 (105)
166 1x4h_A RNA-binding protein 28; 99.8 7.1E-19 2.4E-23 123.7 10.9 81 178-258 12-98 (111)
167 2cpf_A RNA binding motif prote 99.8 3.9E-19 1.3E-23 122.2 9.4 80 179-258 3-85 (98)
168 2dnn_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 124.5 9.0 82 78-162 13-94 (109)
169 2dnh_A Bruno-like 5, RNA bindi 99.8 9.1E-19 3.1E-23 121.9 11.3 80 178-258 12-94 (105)
170 3n9u_C Cleavage and polyadenyl 99.8 6.1E-19 2.1E-23 131.3 10.9 79 180-258 54-134 (156)
171 2ad9_A Polypyrimidine tract-bi 99.8 6.4E-19 2.2E-23 124.2 10.4 82 76-163 26-109 (119)
172 4a8x_A RNA-binding protein wit 99.8 3.7E-19 1.3E-23 119.8 8.8 79 180-258 3-82 (88)
173 3ulh_A THO complex subunit 4; 99.8 8.5E-19 2.9E-23 122.5 10.9 80 178-258 26-105 (107)
174 3ucg_A Polyadenylate-binding p 99.8 7.9E-19 2.7E-23 118.4 10.3 76 182-258 7-82 (89)
175 1x5o_A RNA binding motif, sing 99.8 1.1E-18 3.9E-23 123.3 11.4 84 77-161 21-112 (114)
176 2hgl_A HNRPF protein, heteroge 99.8 2.2E-19 7.6E-24 130.2 7.9 85 76-162 39-126 (136)
177 2jwn_A Embryonic polyadenylate 99.8 5.8E-19 2E-23 126.7 9.9 83 79-162 34-116 (124)
178 2fy1_A RNA-binding motif prote 99.8 8.4E-19 2.9E-23 124.2 10.5 79 179-258 5-83 (116)
179 1s79_A Lupus LA protein; RRM, 99.8 5.4E-19 1.8E-23 122.3 9.2 77 180-258 10-86 (103)
180 2adc_A Polypyrimidine tract-bi 99.8 3.9E-19 1.3E-23 141.2 9.7 141 16-161 46-228 (229)
181 1qm9_A Polypyrimidine tract-bi 99.8 2.5E-19 8.4E-24 139.1 8.4 141 16-161 15-197 (198)
182 2fc9_A NCL protein; structure 99.8 8.9E-19 3E-23 121.1 10.3 84 76-163 10-93 (101)
183 1wez_A HnRNP H', FTP-3, hetero 99.8 3.9E-19 1.3E-23 122.9 8.4 83 77-162 11-93 (102)
184 2dgp_A Bruno-like 4, RNA bindi 99.8 5.8E-19 2E-23 123.1 9.4 81 178-258 10-93 (106)
185 2d9p_A Polyadenylate-binding p 99.8 9.8E-19 3.4E-23 121.3 10.5 79 178-258 12-90 (103)
186 1x4d_A Matrin 3; structural ge 99.8 4.1E-19 1.4E-23 122.1 8.4 80 77-162 11-93 (102)
187 1wel_A RNA-binding protein 12; 99.8 2E-19 7E-24 129.1 7.2 87 76-163 20-106 (124)
188 2dnq_A RNA-binding protein 4B; 99.8 1.4E-18 4.8E-23 117.5 10.9 79 77-163 4-82 (90)
189 1wex_A Hypothetical protein (r 99.8 1.1E-18 3.6E-23 120.9 10.4 82 76-163 10-93 (104)
190 1x4e_A RNA binding motif, sing 99.8 1.7E-19 5.9E-24 120.7 6.2 80 179-258 3-82 (85)
191 3r27_A HnRNP L, heterogeneous 99.8 1.5E-18 5E-23 118.2 10.8 77 176-258 16-94 (100)
192 2jvr_A Nucleolar protein 3; RN 99.8 5.8E-19 2E-23 123.4 9.1 81 77-161 24-105 (111)
193 2e5j_A Methenyltetrahydrofolat 99.8 2.1E-18 7E-23 118.3 11.7 82 76-162 14-95 (97)
194 3sde_A Paraspeckle component 1 99.8 2.7E-19 9.3E-24 144.8 8.5 140 18-162 35-180 (261)
195 1fj7_A Nucleolin RBD1, protein 99.8 1.1E-19 3.8E-24 125.7 5.3 84 77-162 13-96 (101)
196 2lmi_A GRSF-1, G-rich sequence 99.8 2.4E-19 8.2E-24 125.3 7.1 85 76-162 6-93 (107)
197 2dng_A Eukaryotic translation 99.8 1.2E-18 4.2E-23 120.8 10.6 79 178-258 12-90 (103)
198 1iqt_A AUF1, heterogeneous nuc 99.8 2.2E-19 7.6E-24 117.2 6.1 75 83-158 1-75 (75)
199 3ex7_B RNA-binding protein 8A; 99.8 1.3E-18 4.5E-23 125.2 10.7 82 177-258 18-99 (126)
200 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-18 3.9E-23 131.4 10.8 87 77-163 68-154 (165)
201 2cpe_A RNA-binding protein EWS 99.8 1E-18 3.5E-23 123.4 9.8 82 177-258 11-100 (113)
202 2ytc_A PRE-mRNA-splicing facto 99.8 2.1E-18 7.2E-23 115.3 10.8 78 76-159 7-85 (85)
203 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.3E-19 1.1E-23 116.9 6.7 76 182-258 1-76 (77)
204 2cpx_A Hypothetical protein FL 99.8 4.3E-19 1.5E-23 125.7 7.8 88 76-163 20-107 (115)
205 3pgw_S U1-70K; protein-RNA com 99.8 4.5E-20 1.5E-24 159.1 3.2 80 179-258 100-179 (437)
206 2cpj_A Non-POU domain-containi 99.8 1.4E-18 4.8E-23 119.7 10.1 82 75-162 9-90 (99)
207 2dgx_A KIAA0430 protein; RRM d 99.8 1.6E-18 5.5E-23 118.6 10.3 77 179-258 7-87 (96)
208 1p1t_A Cleavage stimulation fa 99.8 6.9E-19 2.3E-23 122.3 8.5 77 182-258 9-85 (104)
209 2cqd_A RNA-binding region cont 99.8 1.8E-18 6E-23 122.7 10.8 80 178-258 14-93 (116)
210 1fje_B Nucleolin RBD12, protei 99.8 1.9E-19 6.5E-24 136.9 6.2 134 22-161 30-174 (175)
211 2ek1_A RNA-binding protein 12; 99.8 3.5E-19 1.2E-23 121.7 6.8 80 179-258 13-92 (95)
212 1why_A Hypothetical protein ri 99.8 2.9E-18 1E-22 117.6 11.5 80 77-162 13-94 (97)
213 2dhg_A TRNA selenocysteine ass 99.8 1.4E-18 4.8E-23 120.8 9.9 79 179-258 7-87 (104)
214 2cqp_A RNA-binding protein 12; 99.8 4.2E-19 1.4E-23 122.1 7.2 81 178-258 12-92 (98)
215 2krb_A Eukaryotic translation 99.8 3.1E-19 1.1E-23 118.3 6.3 73 81-155 1-80 (81)
216 2cq3_A RNA-binding protein 9; 99.8 4.3E-18 1.5E-22 118.1 12.4 80 177-258 11-90 (103)
217 1wi8_A EIF-4B, eukaryotic tran 99.8 1.6E-18 5.3E-23 120.5 10.0 78 179-258 13-91 (104)
218 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.6E-18 5.3E-23 127.1 10.5 82 177-258 59-140 (140)
219 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-18 4E-23 119.9 9.0 74 179-258 14-89 (105)
220 2jvo_A Nucleolar protein 3; nu 99.8 2E-18 6.8E-23 120.7 10.4 81 75-163 25-105 (108)
221 2fc8_A NCL protein; structure 99.8 2.5E-18 8.5E-23 119.1 10.7 86 75-163 9-94 (102)
222 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.1E-18 1.1E-22 118.8 11.1 79 178-258 12-90 (103)
223 3pgw_A U1-A; protein-RNA compl 99.8 1.7E-18 5.7E-23 141.7 11.3 76 79-159 205-281 (282)
224 2xnq_A Nuclear polyadenylated 99.8 3.3E-18 1.1E-22 117.2 11.0 80 74-161 15-95 (97)
225 2dgv_A HnRNP M, heterogeneous 99.8 2.5E-18 8.7E-23 116.7 10.3 78 179-258 6-83 (92)
226 1u6f_A Tcubp1, RNA-binding pro 99.8 1.9E-18 6.6E-23 126.5 10.3 82 177-258 38-119 (139)
227 2do0_A HnRNP M, heterogeneous 99.8 5E-18 1.7E-22 119.9 11.8 80 178-258 12-91 (114)
228 1nu4_A U1A RNA binding domain; 99.8 7.9E-19 2.7E-23 120.4 7.4 84 77-163 4-91 (97)
229 2la4_A Nuclear and cytoplasmic 99.8 2.3E-18 8E-23 119.0 9.5 77 78-160 24-100 (101)
230 1x4c_A Splicing factor, argini 99.8 6E-18 2.1E-22 118.3 11.7 79 78-163 12-95 (108)
231 2i2y_A Fusion protein consists 99.8 1.3E-18 4.4E-23 129.1 8.6 82 75-161 67-148 (150)
232 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.2E-18 1.4E-22 127.2 11.4 81 178-258 36-116 (156)
233 1x4g_A Nucleolysin TIAR; struc 99.8 3.4E-18 1.2E-22 119.8 10.2 80 78-163 22-101 (109)
234 2rs2_A Musashi-1, RNA-binding 99.8 3E-18 1E-22 120.0 9.9 80 178-258 22-101 (109)
235 2cq4_A RNA binding motif prote 99.8 1.7E-18 5.6E-23 122.5 8.6 77 181-258 25-101 (114)
236 3pgw_S U1-70K; protein-RNA com 99.8 2.8E-18 9.6E-23 147.9 11.7 85 78-162 99-183 (437)
237 1x4f_A Matrin 3; structural ge 99.8 3E-18 1E-22 119.5 9.6 80 77-162 21-103 (112)
238 2m2b_A RNA-binding protein 10; 99.8 4.3E-19 1.5E-23 128.6 5.6 80 178-258 20-105 (131)
239 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.1E-19 3.1E-23 120.8 6.9 79 178-258 16-95 (100)
240 2cpi_A CCR4-NOT transcription 99.8 2E-18 6.7E-23 121.4 8.7 81 178-258 12-98 (111)
241 2dha_A FLJ20171 protein; RRM d 99.8 1.4E-18 4.8E-23 123.8 8.0 83 79-163 21-107 (123)
242 2ki2_A SS-DNA binding protein 99.8 3.2E-19 1.1E-23 120.7 4.4 76 182-258 2-77 (90)
243 2cq1_A PTB-like protein L; RRM 99.8 5.5E-18 1.9E-22 116.5 10.6 77 176-258 10-88 (101)
244 2dis_A Unnamed protein product 99.8 3.2E-18 1.1E-22 120.0 9.3 80 179-258 6-89 (109)
245 2kt5_A RNA and export factor-b 99.8 4.2E-18 1.4E-22 122.2 10.1 80 178-258 32-111 (124)
246 2dgu_A Heterogeneous nuclear r 99.8 6.6E-18 2.2E-22 117.1 10.8 79 77-163 7-85 (103)
247 2dh8_A DAZ-associated protein 99.8 1.8E-18 6.2E-23 120.4 7.9 80 178-258 13-92 (105)
248 2dgt_A RNA-binding protein 30; 99.8 7.1E-18 2.4E-22 114.5 10.6 80 76-163 5-84 (92)
249 3q2s_C Cleavage and polyadenyl 99.8 1.5E-18 5.2E-23 137.3 8.3 84 80-163 67-152 (229)
250 2cpd_A Apobec-1 stimulating pr 99.8 1.5E-17 5.2E-22 114.4 12.3 81 74-162 8-90 (99)
251 2a3j_A U1 small nuclear ribonu 99.8 6.2E-18 2.1E-22 121.2 10.6 78 178-258 26-107 (127)
252 2nlw_A Eukaryotic translation 99.8 2.9E-18 9.9E-23 119.3 8.5 78 179-258 13-97 (105)
253 1x4a_A Splicing factor, argini 99.8 1.1E-17 3.6E-22 117.3 11.4 78 178-258 19-96 (109)
254 1x4d_A Matrin 3; structural ge 99.8 2.5E-18 8.5E-23 118.2 7.9 75 178-258 12-89 (102)
255 2dnp_A RNA-binding protein 14; 99.8 5.9E-18 2E-22 114.4 9.7 79 77-163 5-83 (90)
256 1wex_A Hypothetical protein (r 99.8 8.3E-18 2.8E-22 116.3 10.6 76 177-258 11-88 (104)
257 2f3j_A RNA and export factor b 99.8 7.1E-18 2.4E-22 128.2 11.1 86 77-163 84-169 (177)
258 2jwn_A Embryonic polyadenylate 99.8 4.5E-18 1.6E-22 122.0 9.5 76 182-258 37-112 (124)
259 2cqg_A TDP-43, TAR DNA-binding 99.7 1.1E-17 3.7E-22 116.0 11.1 80 177-258 11-90 (103)
260 1iqt_A AUF1, heterogeneous nuc 99.7 9.2E-19 3.1E-23 114.2 5.3 75 183-258 1-75 (75)
261 2err_A Ataxin-2-binding protei 99.7 5E-18 1.7E-22 118.9 9.4 81 176-258 24-104 (109)
262 2ad9_A Polypyrimidine tract-bi 99.7 7.1E-18 2.4E-22 118.9 10.1 76 177-258 27-104 (119)
263 2dgw_A Probable RNA-binding pr 99.7 7E-18 2.4E-22 114.3 9.7 77 179-258 8-84 (91)
264 2xs2_A Deleted in azoospermia- 99.7 1.1E-18 3.8E-23 120.8 5.8 81 78-161 6-86 (102)
265 1fjc_A Nucleolin RBD2, protein 99.7 2.9E-18 9.9E-23 117.4 7.7 82 76-162 11-92 (96)
266 2lcw_A RNA-binding protein FUS 99.6 8.5E-20 2.9E-24 129.5 0.0 87 78-164 4-98 (116)
267 2hgm_A HNRPF protein, heteroge 99.7 2E-18 7E-23 123.2 7.1 83 76-161 37-121 (126)
268 2cqh_A IGF-II mRNA-binding pro 99.7 5.5E-18 1.9E-22 115.3 8.7 80 77-163 4-85 (93)
269 1whx_A Hypothetical protein ri 99.7 3.3E-18 1.1E-22 120.2 7.7 76 80-161 9-84 (111)
270 2ytc_A PRE-mRNA-splicing facto 99.7 1.2E-17 4.3E-22 111.5 10.2 75 178-258 9-84 (85)
271 2kvi_A Nuclear polyadenylated 99.7 5.5E-18 1.9E-22 115.9 8.6 79 77-163 6-85 (96)
272 1wf1_A RNA-binding protein RAL 99.7 1.2E-17 4.1E-22 117.2 10.5 78 77-162 23-101 (110)
273 1x5o_A RNA binding motif, sing 99.7 1.5E-17 5.2E-22 117.5 11.1 80 178-258 22-109 (114)
274 2cpy_A RNA-binding protein 12; 99.7 3.3E-18 1.1E-22 120.8 7.2 79 178-258 12-91 (114)
275 3lqv_A PRE-mRNA branch site pr 99.7 2.1E-17 7.3E-22 116.9 11.4 77 179-258 6-82 (115)
276 1x4b_A Heterogeneous nuclear r 99.7 6.6E-18 2.3E-22 119.7 8.7 76 182-258 28-103 (116)
277 2j8a_A Histone-lysine N-methyl 99.7 5.8E-18 2E-22 118.7 8.1 82 82-163 3-98 (136)
278 2krb_A Eukaryotic translation 99.7 3.7E-18 1.3E-22 113.1 6.6 73 182-256 2-81 (81)
279 1wg5_A Heterogeneous nuclear r 99.7 1.2E-17 3.9E-22 116.1 9.3 79 178-258 12-91 (104)
280 2hgn_A Heterogeneous nuclear r 99.7 1.3E-18 4.6E-23 126.5 4.7 83 77-162 42-124 (139)
281 2cq2_A Hypothetical protein LO 99.7 6.3E-18 2.1E-22 117.9 7.9 81 77-163 21-108 (114)
282 2e44_A Insulin-like growth fac 99.7 1.5E-17 5.2E-22 113.8 9.6 80 78-161 12-92 (96)
283 2dnq_A RNA-binding protein 4B; 99.7 3.1E-17 1.1E-21 110.8 10.9 72 179-258 6-77 (90)
284 2fc9_A NCL protein; structure 99.7 1.5E-17 5.2E-22 114.8 9.6 78 177-258 11-88 (101)
285 2cpj_A Non-POU domain-containi 99.7 1.4E-17 4.8E-22 114.6 9.3 76 177-258 11-86 (99)
286 1why_A Hypothetical protein ri 99.7 3.1E-17 1.1E-21 112.4 10.8 75 178-258 14-90 (97)
287 2jvr_A Nucleolar protein 3; RN 99.7 9.1E-18 3.1E-22 117.3 7.9 75 180-258 27-102 (111)
288 3egn_A RNA-binding protein 40; 99.7 4.1E-18 1.4E-22 125.3 6.5 87 77-163 41-132 (143)
289 1x5p_A Negative elongation fac 99.7 4.9E-17 1.7E-21 111.4 11.4 81 75-163 9-89 (97)
290 2hgl_A HNRPF protein, heteroge 99.7 7.4E-18 2.5E-22 122.2 7.6 78 179-258 42-122 (136)
291 2xnq_A Nuclear polyadenylated 99.7 4.6E-17 1.6E-21 111.5 11.0 75 176-258 17-92 (97)
292 2e5g_A U6 snRNA-specific termi 99.7 1.6E-17 5.3E-22 113.2 8.6 79 78-162 5-83 (94)
293 1whx_A Hypothetical protein ri 99.7 1.6E-17 5.5E-22 116.7 8.8 72 181-258 10-81 (111)
294 1wg1_A KIAA1579 protein, homol 99.7 1.7E-17 5.9E-22 111.6 8.6 75 80-161 4-78 (88)
295 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-17 4E-22 115.5 7.9 78 178-258 12-89 (102)
296 3q2s_C Cleavage and polyadenyl 99.7 1.3E-17 4.3E-22 132.0 9.1 79 180-258 67-147 (229)
297 1nu4_A U1A RNA binding domain; 99.7 1E-17 3.5E-22 114.8 7.4 77 179-258 6-86 (97)
298 2db1_A Heterogeneous nuclear r 99.7 9.3E-18 3.2E-22 119.2 7.5 78 179-258 15-95 (118)
299 1wel_A RNA-binding protein 12; 99.7 3.8E-18 1.3E-22 122.4 5.4 80 178-258 22-101 (124)
300 2diu_A KIAA0430 protein; struc 99.7 3.8E-17 1.3E-21 108.4 9.7 74 80-163 7-86 (96)
301 2jvo_A Nucleolar protein 3; nu 99.7 3.1E-17 1E-21 114.6 9.7 74 177-258 27-100 (108)
302 1x4c_A Splicing factor, argini 99.7 4.9E-17 1.7E-21 113.7 10.8 73 179-258 13-90 (108)
303 2fc8_A NCL protein; structure 99.7 3.4E-17 1.2E-21 113.3 9.8 78 178-258 12-89 (102)
304 1x4g_A Nucleolysin TIAR; struc 99.7 3.7E-17 1.3E-21 114.5 10.2 74 179-258 23-96 (109)
305 2la4_A Nuclear and cytoplasmic 99.7 2.3E-17 7.8E-22 114.0 8.7 75 178-258 24-98 (101)
306 1x4f_A Matrin 3; structural ge 99.7 8.6E-18 2.9E-22 117.2 6.3 75 178-258 22-99 (112)
307 1sjr_A Polypyrimidine tract-bi 99.7 5.3E-17 1.8E-21 120.1 10.8 79 80-162 45-125 (164)
308 2lmi_A GRSF-1, G-rich sequence 99.7 7.6E-18 2.6E-22 117.6 6.0 79 178-258 8-89 (107)
309 1fj7_A Nucleolin RBD1, protein 99.7 2.2E-18 7.6E-23 119.1 3.2 78 179-258 15-92 (101)
310 2dnp_A RNA-binding protein 14; 99.7 5.9E-17 2E-21 109.4 10.1 73 178-258 6-78 (90)
311 2dgt_A RNA-binding protein 30; 99.7 6E-17 2.1E-21 109.8 10.1 73 178-258 7-79 (92)
312 2dnn_A RNA-binding protein 12; 99.7 4.1E-17 1.4E-21 113.8 9.3 74 182-258 17-90 (109)
313 2j8a_A Histone-lysine N-methyl 99.7 1.5E-17 5E-22 116.6 7.0 76 182-257 3-92 (136)
314 2pe8_A Splicing factor 45; RRM 99.7 1.1E-16 3.7E-21 110.9 11.4 80 179-258 6-91 (105)
315 2cpx_A Hypothetical protein FL 99.7 6.3E-18 2.1E-22 119.6 4.9 77 178-258 22-102 (115)
316 2e5j_A Methenyltetrahydrofolat 99.7 5.3E-17 1.8E-21 111.3 9.4 76 178-258 16-91 (97)
317 2hvz_A Splicing factor, argini 99.7 2.2E-17 7.7E-22 114.0 7.5 72 182-258 1-72 (101)
318 2cpd_A Apobec-1 stimulating pr 99.7 1.1E-16 3.7E-21 110.1 10.6 76 175-258 9-86 (99)
319 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-16 3.8E-21 114.1 10.8 76 82-162 29-107 (130)
320 2dgu_A Heterogeneous nuclear r 99.7 8.5E-17 2.9E-21 111.5 10.0 73 178-258 8-80 (103)
321 2f3j_A RNA and export factor b 99.7 4.8E-17 1.6E-21 123.6 9.5 80 178-258 85-164 (177)
322 2dnl_A Cytoplasmic polyadenyla 99.7 4.8E-17 1.6E-21 114.8 8.6 79 78-159 5-86 (114)
323 2hgn_A Heterogeneous nuclear r 99.7 7.8E-18 2.7E-22 122.4 4.5 119 124-258 2-120 (139)
324 2lcw_A RNA-binding protein FUS 99.5 1.1E-18 3.9E-23 123.7 0.0 80 179-258 5-92 (116)
325 2e44_A Insulin-like growth fac 99.7 6E-17 2E-21 110.8 8.6 76 179-258 13-89 (96)
326 2hzc_A Splicing factor U2AF 65 99.7 6.4E-17 2.2E-21 108.5 8.5 73 78-157 3-86 (87)
327 1fjc_A Nucleolin RBD2, protein 99.7 1.9E-17 6.4E-22 113.3 5.7 75 179-258 14-88 (96)
328 3beg_B Splicing factor, argini 99.7 4.2E-17 1.4E-21 115.3 7.7 76 79-161 14-94 (115)
329 2pe8_A Splicing factor 45; RRM 99.7 2E-16 6.7E-21 109.6 10.9 83 78-160 5-93 (105)
330 3d2w_A TAR DNA-binding protein 99.7 9.6E-17 3.3E-21 108.0 8.9 77 77-162 7-85 (89)
331 2xs2_A Deleted in azoospermia- 99.7 1.9E-17 6.6E-22 114.6 5.6 75 181-258 9-83 (102)
332 2kvi_A Nuclear polyadenylated 99.7 6.8E-17 2.3E-21 110.5 8.2 73 178-258 7-80 (96)
333 3zzy_A Polypyrimidine tract-bi 99.7 1.8E-16 6.2E-21 113.0 10.2 72 182-258 29-103 (130)
334 2diu_A KIAA0430 protein; struc 99.7 2.2E-16 7.7E-21 104.7 9.7 69 180-258 7-81 (96)
335 2cq2_A Hypothetical protein LO 99.7 7.7E-17 2.6E-21 112.4 7.9 75 178-258 22-103 (114)
336 2e5i_A Heterogeneous nuclear r 99.7 5.2E-16 1.8E-20 110.2 12.2 74 83-162 27-103 (124)
337 1wg1_A KIAA1579 protein, homol 99.7 9.8E-17 3.3E-21 107.9 8.0 72 180-258 4-75 (88)
338 2bz2_A Negative elongation fac 99.7 1.9E-16 6.7E-21 112.7 9.8 80 76-163 34-113 (121)
339 2e5g_A U6 snRNA-specific termi 99.7 2.4E-16 8.3E-21 107.3 9.6 73 180-258 7-79 (94)
340 1wf1_A RNA-binding protein RAL 99.7 1.3E-16 4.6E-21 111.8 8.6 71 180-258 26-97 (110)
341 2voo_A Lupus LA protein; RNA-b 99.7 2E-16 6.9E-21 121.9 10.3 81 80-162 108-188 (193)
342 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.8E-21 108.8 7.8 73 179-258 6-80 (93)
343 2hgm_A HNRPF protein, heteroge 99.7 8.9E-17 3E-21 114.7 7.4 77 179-258 40-118 (126)
344 1sjr_A Polypyrimidine tract-bi 99.7 2.5E-16 8.7E-21 116.5 10.1 74 181-258 46-121 (164)
345 1x5p_A Negative elongation fac 99.7 6E-16 2E-20 105.9 11.1 73 178-258 12-84 (97)
346 2dha_A FLJ20171 protein; RRM d 99.7 5E-17 1.7E-21 115.7 5.8 78 179-258 21-102 (123)
347 3egn_A RNA-binding protein 40; 99.7 2.6E-16 8.8E-21 115.6 8.3 78 178-258 42-127 (143)
348 2e5i_A Heterogeneous nuclear r 99.7 9.3E-16 3.2E-20 108.9 10.7 70 183-258 27-99 (124)
349 1wf0_A TDP-43, TAR DNA-binding 99.7 1E-16 3.6E-21 107.7 5.5 78 79-163 3-80 (88)
350 2voo_A Lupus LA protein; RNA-b 99.7 9.3E-16 3.2E-20 118.2 11.5 120 132-258 63-184 (193)
351 3beg_B Splicing factor, argini 99.6 6.5E-16 2.2E-20 109.1 8.1 71 180-257 15-90 (115)
352 3v4m_A Splicing factor U2AF 65 99.6 9.6E-16 3.3E-20 106.2 8.7 80 179-258 3-94 (105)
353 3d2w_A TAR DNA-binding protein 99.6 1.4E-15 4.9E-20 102.2 9.3 71 179-258 9-81 (89)
354 2dnl_A Cytoplasmic polyadenyla 99.6 8.7E-16 3E-20 108.3 8.0 64 179-243 6-72 (114)
355 2hzc_A Splicing factor U2AF 65 99.6 1.3E-15 4.5E-20 102.0 8.5 71 181-258 6-87 (87)
356 2dit_A HIV TAT specific factor 99.6 7.3E-15 2.5E-19 103.2 11.2 83 76-162 10-103 (112)
357 3u1l_A PRE-mRNA-splicing facto 99.6 1.6E-15 5.3E-20 119.6 8.4 79 78-162 131-230 (240)
358 2bz2_A Negative elongation fac 99.6 3.3E-15 1.1E-19 106.3 9.3 72 179-258 37-108 (121)
359 3v4m_A Splicing factor U2AF 65 99.6 3.6E-15 1.2E-19 103.2 8.9 83 79-161 3-97 (105)
360 3ue2_A Poly(U)-binding-splicin 99.6 4.8E-15 1.6E-19 104.6 8.7 81 80-160 19-108 (118)
361 3ue2_A Poly(U)-binding-splicin 99.6 4E-15 1.4E-19 105.0 8.2 79 180-258 19-106 (118)
362 3u1l_A PRE-mRNA-splicing facto 99.6 5E-15 1.7E-19 116.8 9.1 75 178-258 131-226 (240)
363 2dit_A HIV TAT specific factor 99.6 1.1E-14 3.6E-19 102.4 9.8 77 178-258 12-99 (112)
364 1jmt_A Splicing factor U2AF 35 99.6 1.2E-15 4E-20 105.6 4.5 71 187-258 21-103 (104)
365 1jmt_A Splicing factor U2AF 35 99.6 9.1E-16 3.1E-20 106.1 3.9 72 86-158 20-103 (104)
366 1wf0_A TDP-43, TAR DNA-binding 99.6 2.8E-15 9.6E-20 100.7 5.2 70 180-258 4-75 (88)
367 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.2E-13 7.5E-18 93.1 10.8 75 81-162 10-91 (100)
368 3s6e_A RNA-binding protein 39; 99.5 1.1E-13 3.8E-18 96.9 9.1 76 179-258 5-90 (114)
369 3s6e_A RNA-binding protein 39; 99.5 3.6E-13 1.2E-17 94.3 10.4 81 79-163 5-95 (114)
370 3tht_A Alkylated DNA repair pr 99.5 1.6E-13 5.5E-18 113.8 9.1 78 76-159 13-97 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.2E-12 4.1E-17 89.4 10.9 61 191-258 27-87 (100)
372 3tht_A Alkylated DNA repair pr 99.4 1.5E-12 5E-17 108.1 9.2 75 178-258 15-96 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 3.5E-11 1.2E-15 79.0 8.3 71 179-258 5-83 (91)
374 2dnr_A Synaptojanin-1; RRM dom 99.2 3.5E-11 1.2E-15 79.0 7.9 76 79-163 5-88 (91)
375 1owx_A Lupus LA protein, SS-B, 99.2 7.7E-11 2.6E-15 82.5 9.1 74 178-257 15-92 (121)
376 3dxb_A Thioredoxin N-terminall 99.2 2.5E-10 8.6E-15 89.7 12.5 66 193-258 141-210 (222)
377 1owx_A Lupus LA protein, SS-B, 99.2 1.4E-10 4.7E-15 81.3 8.7 81 75-161 12-96 (121)
378 1ufw_A Synaptojanin 2; RNP dom 99.1 3.9E-10 1.3E-14 74.4 6.8 73 78-159 12-93 (95)
379 3dxb_A Thioredoxin N-terminall 99.0 6.4E-10 2.2E-14 87.4 8.4 68 93-160 141-212 (222)
380 1ufw_A Synaptojanin 2; RNP dom 99.0 3.3E-10 1.1E-14 74.7 4.9 73 176-257 10-91 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.9 7.3E-09 2.5E-13 69.7 9.2 71 180-256 20-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.7 1.3E-07 4.4E-12 63.7 9.8 74 79-158 19-97 (117)
383 1wey_A Calcipressin 1; structu 98.4 1.1E-06 3.6E-11 59.0 7.1 73 180-258 4-81 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.4 5.2E-06 1.8E-10 55.4 10.4 89 79-194 6-99 (104)
385 1whv_A Poly(A)-specific ribonu 98.2 1.6E-05 5.3E-10 52.5 9.0 58 77-143 12-69 (100)
386 1uw4_A UPF3X; nonsense mediate 98.1 3E-05 1E-09 51.1 9.0 67 182-248 2-70 (91)
387 1uw4_A UPF3X; nonsense mediate 98.0 2.2E-05 7.4E-10 51.8 7.3 68 82-149 2-71 (91)
388 1wey_A Calcipressin 1; structu 98.0 2.1E-05 7.1E-10 52.8 6.5 73 82-160 6-83 (104)
389 3ctr_A Poly(A)-specific ribonu 97.7 4.1E-05 1.4E-09 50.6 4.1 54 82-144 7-60 (101)
390 1wwh_A Nucleoporin 35, nucleop 97.6 0.00027 9.4E-09 48.7 7.8 67 181-255 24-91 (119)
391 1wwh_A Nucleoporin 35, nucleop 97.6 0.00026 9E-09 48.8 7.4 74 78-159 21-95 (119)
392 2dhx_A Poly (ADP-ribose) polym 97.6 0.00094 3.2E-08 44.6 9.7 68 180-256 7-79 (104)
393 2l08_A Regulator of nonsense t 97.5 0.00019 6.6E-09 47.5 5.7 78 181-258 9-93 (97)
394 1whv_A Poly(A)-specific ribonu 97.5 0.00057 2E-08 45.0 7.3 54 182-244 17-70 (100)
395 2l08_A Regulator of nonsense t 97.4 0.0001 3.6E-09 48.8 3.6 69 81-149 9-79 (97)
396 3ctr_A Poly(A)-specific ribonu 96.8 0.0014 4.7E-08 43.4 4.3 54 182-244 7-60 (101)
397 3p3d_A Nucleoporin 53; structu 96.5 0.0072 2.5E-07 42.2 6.4 73 182-256 8-94 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.4 0.0019 6.5E-08 55.5 3.7 57 79-141 51-107 (464)
399 3p3d_A Nucleoporin 53; structu 96.2 0.011 3.9E-07 41.2 5.7 77 81-159 7-97 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.0 0.013 4.3E-07 50.4 3.1 54 182-241 54-107 (464)
401 3d45_A Poly(A)-specific ribonu 94.7 0.12 4.3E-06 45.1 8.5 56 80-144 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 86.5 2 6.8E-05 37.5 7.4 55 182-245 441-495 (507)
403 4eyt_A Telomerase associated p 75.1 14 0.00047 23.7 8.7 55 182-244 13-67 (129)
404 2g0c_A ATP-dependent RNA helic 61.0 5.6 0.00019 24.4 2.4 58 192-258 12-74 (76)
405 3j21_T 50S ribosomal protein L 52.5 42 0.0014 21.3 5.7 54 84-140 25-80 (86)
406 4eyt_A Telomerase associated p 51.2 45 0.0015 21.3 8.5 58 79-144 10-67 (129)
407 4e8u_A Putative uncharacterize 48.2 46 0.0016 24.2 5.7 49 83-134 14-73 (172)
408 4e8u_A Putative uncharacterize 39.5 70 0.0024 23.3 5.6 49 182-233 13-72 (172)
409 3j21_T 50S ribosomal protein L 39.5 72 0.0025 20.2 6.1 55 185-242 26-82 (86)
410 3lpe_A Putative transcription 37.1 80 0.0027 20.1 5.5 34 107-145 39-72 (92)
411 1vq8_S 50S ribosomal protein L 35.9 52 0.0018 20.8 3.9 53 84-139 24-78 (85)
412 1igq_A Transcriptional repress 35.8 38 0.0013 20.0 2.9 22 110-132 21-42 (62)
413 3u5e_X 60S ribosomal protein L 30.2 95 0.0032 21.8 4.8 54 84-140 81-136 (142)
414 4a17_R RPL23A, 60S ribosomal p 29.5 1.1E+02 0.0036 21.7 5.0 54 84-140 89-144 (150)
415 2v94_A RPS24, 30S ribosomal pr 29.4 64 0.0022 21.4 3.7 47 91-138 37-88 (107)
416 1xn9_A 30S ribosomal protein S 28.1 56 0.0019 21.5 3.2 49 91-140 28-81 (101)
417 1ywx_A 30S ribosomal protein S 25.5 58 0.002 21.4 2.9 47 91-138 28-79 (102)
418 3ts2_A Protein LIN-28 homolog 24.4 17 0.00059 25.7 0.2 28 196-231 2-29 (148)
419 4a17_R RPL23A, 60S ribosomal p 24.1 1.8E+02 0.0062 20.5 5.4 55 184-241 89-145 (150)
420 3iz5_X 60S ribosomal protein L 23.6 95 0.0032 22.0 3.9 54 84-140 91-146 (152)
421 2zkr_s 60S ribosomal protein L 23.6 1.4E+02 0.0049 21.2 4.8 54 84-140 95-150 (156)
422 2g1d_A 30S ribosomal protein S 22.4 58 0.002 21.2 2.4 46 92-138 30-80 (98)
423 2cu1_A Mitogen-activated prote 21.9 90 0.0031 20.4 3.2 63 88-159 23-86 (103)
424 3h7h_B Transcription elongatio 21.7 1.1E+02 0.0039 20.1 3.8 36 107-147 40-75 (106)
425 2xzm_P RPS24E; ribosome, trans 21.5 1.3E+02 0.0044 21.3 4.2 47 91-138 31-82 (149)
426 3fut_A Dimethyladenosine trans 21.0 1E+02 0.0035 24.1 4.1 32 82-114 111-142 (271)
427 2e5p_A Protein PHF1, PHD finge 20.8 80 0.0027 18.9 2.5 12 222-233 36-47 (68)
428 2eqj_A Metal-response element- 20.7 80 0.0027 18.9 2.5 11 222-232 40-50 (66)
429 3u5c_Y RP50, 40S ribosomal pro 20.6 1.1E+02 0.0038 21.2 3.6 47 91-138 33-84 (135)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.5e-38 Score=250.81 Aligned_cols=169 Identities=26% Similarity=0.423 Sum_probs=151.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
.+..+.++|||+|||+++|+++|+++|++||+|.+|++++|..+|+++|||||+|.+.++|++|++.+++..+.|+.+++
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 34556789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHH
Q 025070 156 NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235 (258)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~ 235 (258)
.++......... ...+|||+|||..+++++|+++|++||.|..+.|+.+.. .++|||||+|.+.++
T Consensus 90 ~~~~~~~~~~~~------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 90 MWSQRDPSLRKS------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEA 155 (213)
T ss_dssp EECCCCTHHHHH------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHH
T ss_pred cccccccccccc------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHH
Confidence 998765432211 236899999999999999999999999999999998763 478999999999999
Q ss_pred HHHHHHHhcCCccCCeeeEEEeC
Q 025070 236 AEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 236 A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
|.+|++.|||..|+|+.|+|.||
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHhCCCEECCEEEEEEEc
Confidence 99999999999999999999997
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-38 Score=239.22 Aligned_cols=164 Identities=31% Similarity=0.548 Sum_probs=153.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
++|||+|||.++|+++|+++|+.||.|.+++++.+. ++.++|||||+|.+.++|++|++.+++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999998 6889999999999999999999999999999999999998654
Q ss_pred chhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 025070 162 LVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241 (258)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~ 241 (258)
.. .......+|+|+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|+.
T Consensus 80 ~~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 80 QQ------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp CC------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred CC------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 32 223455799999999999999999999999999999999998899999999999999999999999
Q ss_pred HhcCCccCCeeeEEEeC
Q 025070 242 SLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 242 ~l~g~~~~g~~l~v~~a 258 (258)
.|||..++|+.|+|+||
T Consensus 148 ~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWA 164 (166)
T ss_dssp HHTTCEETTEECEEEES
T ss_pred HhCCCccCCcEEEEEec
Confidence 99999999999999997
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.8e-38 Score=237.20 Aligned_cols=164 Identities=29% Similarity=0.475 Sum_probs=154.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCC
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 160 (258)
.++|||+|||+++++++|+++|+.||.|.+++++.+..+|.++|||||+|.+.++|++|++.|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999999875
Q ss_pred cchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHH
Q 025070 161 PLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAI 240 (258)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~ 240 (258)
.... ....+|+|+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|+
T Consensus 82 ~~~~--------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 147 (167)
T 1fxl_A 82 SSAS--------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 147 (167)
T ss_dssp CCGG--------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred Cccc--------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Confidence 5432 23478999999999999999999999999999999999888999999999999999999999
Q ss_pred HHhcCCccCCee--eEEEeC
Q 025070 241 SSLNNSLLEGQR--IRVNKA 258 (258)
Q Consensus 241 ~~l~g~~~~g~~--l~v~~a 258 (258)
+.|||..++|+. |+|.||
T Consensus 148 ~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 148 KGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHTTCCCTTCSSCCEEEEC
T ss_pred HHhcCCccCCCccceEEEeC
Confidence 999999999975 999998
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.7e-38 Score=238.81 Aligned_cols=165 Identities=28% Similarity=0.458 Sum_probs=155.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
+.++|||+|||+++++++|+++|+.||.|.+++++.+..+|.++|||||+|.+.++|++|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 025070 160 KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A 239 (258)
+... ....++|+|+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|
T Consensus 82 ~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 147 (168)
T 1b7f_A 82 PGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 147 (168)
T ss_dssp CCSS--------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred CCcc--------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHH
Confidence 5532 23457899999999999999999999999999999999988899999999999999999999
Q ss_pred HHHhcCCccCC--eeeEEEeC
Q 025070 240 ISSLNNSLLEG--QRIRVNKA 258 (258)
Q Consensus 240 ~~~l~g~~~~g--~~l~v~~a 258 (258)
+..|||..++| +.|+|+||
T Consensus 148 ~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 148 ISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhcCCEecCCCeEEEEEeC
Confidence 99999999987 99999998
No 5
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.9e-39 Score=265.40 Aligned_cols=229 Identities=17% Similarity=0.235 Sum_probs=184.1
Q ss_pred cccceecccccccCCceeeeeeCCC-----ccceeccccccccccccccccccccccCCCCCCCCCCCCCCceEEEcCCC
Q 025070 16 NLIFSKTHFTFQSRQPILQIRFPKL-----SYSLHNLKTASIEDSTTRLFAVAEETASSSSSSVDTPSEFARRVYIGNIP 90 (258)
Q Consensus 16 ~~~~s~~~~~F~~~G~i~~i~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 90 (258)
+.........|++||+|.+|+++.+ .++++.|.....+..+..+........... ......++|||+|||
T Consensus 52 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~-----v~~~~~~~l~v~nlp 126 (292)
T 2ghp_A 52 SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEII-----VSHLTECTLWMTNFP 126 (292)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECE-----EEECCSCEEEEECCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE-----EEECCCCEEEEECCC
Confidence 3444445559999999999999875 399999999988888776544333332211 112356899999999
Q ss_pred CCCCHHHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchhhhhhh
Q 025070 91 RNIDNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSL 169 (258)
Q Consensus 91 ~~~t~~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~ 169 (258)
.++++++|+++|+.|| .|..++++.+. .|.++|||||+|.+.++|++|++.|++..+.|+.|.|.++.+.......
T Consensus 127 ~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-- 203 (292)
T 2ghp_A 127 PSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT-- 203 (292)
T ss_dssp TTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--------
T ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc--
Confidence 9999999999999999 99999999988 5889999999999999999999999999999999999999766443211
Q ss_pred hhhccCCCCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeeCCC-CCCCccEEEEEeCCHHHHHHHHHHhcCCc
Q 025070 170 LQAEDSNFVDSPYKVYVGNLAKT-VTSEMLKKCFSEKGQVLSAKVLRVPG-TSKSSGFGFVTFSSEEDAEAAISSLNNSL 247 (258)
Q Consensus 170 ~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~i~~~~~-~~~~~~~~fV~f~~~~~A~~A~~~l~g~~ 247 (258)
.......++|+|+|||.. +++++|+++|++||.|..+.++.+.. +|.++|+|||+|.+.++|.+|+ .|||..
T Consensus 204 -----~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 204 -----DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSL 277 (292)
T ss_dssp --------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEE
T ss_pred -----cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCE
Confidence 123345689999999999 99999999999999999999998876 5899999999999999999999 999999
Q ss_pred cCCeeeEEEeC
Q 025070 248 LEGQRIRVNKA 258 (258)
Q Consensus 248 ~~g~~l~v~~a 258 (258)
++|+.|+|.||
T Consensus 278 ~~g~~i~V~~a 288 (292)
T 2ghp_A 278 LGNREISVSLA 288 (292)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCcEEEEEEe
Confidence 99999999997
No 6
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.3e-38 Score=258.25 Aligned_cols=228 Identities=15% Similarity=0.215 Sum_probs=190.6
Q ss_pred eccccceecccccccCCceeeeeeCCCc-cceecccccccccccccc-ccccccccCCCCCCCCCCCCCCceEEEcCCCC
Q 025070 14 QQNLIFSKTHFTFQSRQPILQIRFPKLS-YSLHNLKTASIEDSTTRL-FAVAEETASSSSSSVDTPSEFARRVYIGNIPR 91 (258)
Q Consensus 14 ~~~~~~s~~~~~F~~~G~i~~i~~p~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 91 (258)
+.+.........|++|| |.++.+.... ++++.|.....+..+... ......... ... ......++|||+|||.
T Consensus 31 p~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~-i~v---~~~~~~~~l~v~nlp~ 105 (284)
T 3smz_A 31 PGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERE-LSV---QLQPTDALLCVANLPP 105 (284)
T ss_dssp CTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE-CEE---EECCCSCEEEEESCCT
T ss_pred CCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeE-EEE---EecCCCCEEEEcCCCC
Confidence 33444444556999999 9999886544 899999998777776642 322222211 111 1123457999999999
Q ss_pred CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchhhhhhhhh
Q 025070 92 NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQ 171 (258)
Q Consensus 92 ~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~ 171 (258)
++|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++.|++..++|+.|.|.++.+....
T Consensus 106 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~------- 178 (284)
T 3smz_A 106 SLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT------- 178 (284)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-------
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-------
Confidence 9999999999999999999999999889999999999999999999999999999999999999999754321
Q ss_pred hccCCCCCCCCeEEEcCCCCCC-CHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 025070 172 AEDSNFVDSPYKVYVGNLAKTV-TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250 (258)
Q Consensus 172 ~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g 250 (258)
......++|+|+|||..+ ++++|+++|++||.|..+.+..++ +|.++|+|||+|.+.++|.+|+..|||..++|
T Consensus 179 ----~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 179 ----PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp ----TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred ----cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 122455889999999995 999999999999999999999887 78899999999999999999999999999999
Q ss_pred eeeEEEeC
Q 025070 251 QRIRVNKA 258 (258)
Q Consensus 251 ~~l~v~~a 258 (258)
+.|+|.||
T Consensus 254 ~~l~v~~a 261 (284)
T 3smz_A 254 SHLRVSFC 261 (284)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 99999997
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.1e-37 Score=240.07 Aligned_cols=174 Identities=22% Similarity=0.403 Sum_probs=153.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
...+...++|||+|||+++|+++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 34566779999999999999999999999999999999999998899999999999999999999965 99999999999
Q ss_pred EEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHH
Q 025070 155 VNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234 (258)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~ 234 (258)
|.++........ .......++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.+
T Consensus 86 v~~~~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 86 PKRAVSREDSQR--------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp EEECCC-------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred eecccCcccccc--------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 999876543221 112334589999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHhcCCccCCeeeEEEeC
Q 025070 235 DAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 235 ~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+|.+|+.. +|..++|+.|.|.||
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEEC
T ss_pred HHHHHHHh-CCcEECCEEEEEEec
Confidence 99999986 899999999999997
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.6e-37 Score=243.28 Aligned_cols=177 Identities=27% Similarity=0.454 Sum_probs=155.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
...++|||+|||.++|+++|+++|+.||.|.+++++++..+|.++|||||+|.+.++|++|++.|++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred CCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHH
Q 025070 159 EKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEA 238 (258)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~ 238 (258)
............. .......++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|.+
T Consensus 106 ~~~~~~~~~~~~~---~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 106 SNIGQAQPIIDQL---AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp SCCGGGHHHHHHH---HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCccccchhhhhh---hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 7654332211110 0112345899999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhcCCccCCeeeEEEeC
Q 025070 239 AISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 239 A~~~l~g~~~~g~~l~v~~a 258 (258)
|+..|||..++|+.|+|.||
T Consensus 183 A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEEC
T ss_pred HHHHccCCEeCCcEEEEEEe
Confidence 99999999999999999997
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4.2e-37 Score=233.38 Aligned_cols=162 Identities=23% Similarity=0.410 Sum_probs=150.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
+.++|||+|||.++|+++|+++|+.||.|.+++++++..+|.++|||||+|.+.++|++|++ ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999997 4678999999999886
Q ss_pred CcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 025070 160 KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A 239 (258)
+..... ..++|+|+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|
T Consensus 80 ~~~~~~--------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 80 PRDEQD--------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp CHHHHH--------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred chhhcc--------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 654321 236899999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhcCCccCCeeeEEEeC
Q 025070 240 ISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 240 ~~~l~g~~~~g~~l~v~~a 258 (258)
++ ++|..++|+.|+|.||
T Consensus 146 ~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 146 CQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HH-CSEECSSSSCEEEEEC
T ss_pred Hh-CCCEEeCCeEEEEeec
Confidence 98 8999999999999997
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=6.5e-36 Score=228.36 Aligned_cols=165 Identities=24% Similarity=0.382 Sum_probs=147.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCccC---CeeEE
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTG--RSRRFAFVMMKTVEDANAVIEKLNGTEIG---GREIK 154 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~--~~~g~afV~f~~~~~A~~ai~~l~~~~~~---g~~l~ 154 (258)
..++|||+|||+++|+++|+++|++||+|.+++++++..+| .++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45899999999999999999999999999999999999666 89999999999999999999999998875 67888
Q ss_pred EEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHH
Q 025070 155 VNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEE 234 (258)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~ 234 (258)
+.++...... ....++|+|+|||..+++++|+++|++||.|..+.+..++ +|.++|+|||+|.+.+
T Consensus 82 ~~~~~~~~~~-------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEKNN-------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECGGGCCS-------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHH
T ss_pred Eccccccccc-------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHH
Confidence 8776543221 1234789999999999999999999999999999999986 5889999999999999
Q ss_pred HHHHHHHHhcCCccC---CeeeEEEeC
Q 025070 235 DAEAAISSLNNSLLE---GQRIRVNKA 258 (258)
Q Consensus 235 ~A~~A~~~l~g~~~~---g~~l~v~~a 258 (258)
+|.+|++.|||..+. |+.|+|.||
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 999999999998775 499999998
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=4.8e-35 Score=223.05 Aligned_cols=158 Identities=22% Similarity=0.460 Sum_probs=143.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhC----C-------CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEH----G-------AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI 148 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~----G-------~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~ 148 (258)
+.++|||+|||+++|+++|+++|+.| | .|.++.+. .++|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 56666553 45799999999999999999 8999999
Q ss_pred CCeeEEEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEE
Q 025070 149 GGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFV 228 (258)
Q Consensus 149 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV 228 (258)
.|+.|.|.++..... ....++|+|+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||
T Consensus 76 ~g~~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV 141 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 141 (172)
T ss_dssp TTEECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEE
T ss_pred cCceeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEE
Confidence 999999998754432 123588999999999999999999999999999999999889999999999
Q ss_pred EeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 229 TFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 229 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 142 EYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999999999999999999999998
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=8.1e-36 Score=232.40 Aligned_cols=172 Identities=21% Similarity=0.412 Sum_probs=145.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCC-----------CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHG-----------AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI 148 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G-----------~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~ 148 (258)
..++|||+|||.++|+++|+++|+.|| .|.++.+ +.++|||||+|.+.++|++|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 468999999999999999999999995 4444444 556899999999999999999 8999999
Q ss_pred CCeeEEEEecCCcchhhhhhhh------hhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCC
Q 025070 149 GGREIKVNITEKPLVQVDLSLL------QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKS 222 (258)
Q Consensus 149 ~g~~l~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~ 222 (258)
.|+.|.|.++............ ...........++|+|+|||..+++++|+++|++||.|..+.+..++.+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 9999999998665332111000 0011122356689999999999999999999999999999999999889999
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 223 SGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 223 ~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+|+|||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 999999999999999999999999999999999997
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=3.5e-35 Score=224.54 Aligned_cols=164 Identities=24% Similarity=0.376 Sum_probs=144.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
..+...++|||+|||.++|+++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|++|+ +|++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 45567799999999999999999999999998877 33444457899999999999999999999 59999999999999
Q ss_pred EecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHH
Q 025070 156 NITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEED 235 (258)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~ 235 (258)
.++.+.... .....++|+|+|||..+++++|+++|++||.|..+ ..+|.++|+|||+|.+.++
T Consensus 86 ~~~~~~~~~------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 86 EKPKGRDSK------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp ECCCCSSCS------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHH
T ss_pred ecCCCcccc------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHH
Confidence 998765321 12234799999999999999999999999988766 4577899999999999999
Q ss_pred HHHHHHHhcCCccCCeeeEEEeC
Q 025070 236 AEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 236 A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
|.+|+..|||..++|+.|+|+||
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEEC
T ss_pred HHHHHHHhCCCEECCeEEEEEec
Confidence 99999999999999999999997
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2e-34 Score=225.23 Aligned_cols=172 Identities=19% Similarity=0.198 Sum_probs=141.6
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 80 FARRVYIGNIP-RNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 80 ~~~~l~V~nl~-~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
+.++|||+||| .++|+++|+++|+.||.|.+|+++.+ .+|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 89999999999999999999999765 3799999999999999999999999999999999998
Q ss_pred CCcchhhhh------hh-----------------hhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCe--EEEEE
Q 025070 159 EKPLVQVDL------SL-----------------LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQV--LSAKV 213 (258)
Q Consensus 159 ~~~~~~~~~------~~-----------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v--~~~~i 213 (258)
......... .. .........++.++|||+|||+.+++++|+++|++||.| ..+.+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 643211000 00 000011123456789999999999999999999999999 88888
Q ss_pred eeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCe----eeEEEeC
Q 025070 214 LRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ----RIRVNKA 258 (258)
Q Consensus 214 ~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~~a 258 (258)
+.+. +..+|+|||+|.+.++|.+|+..|||..++|+ .+.|.||
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8765 45679999999999999999999999999888 3555543
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.6e-33 Score=224.38 Aligned_cols=173 Identities=21% Similarity=0.326 Sum_probs=146.4
Q ss_pred CCCCCCceEEEcCCCC-CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 76 TPSEFARRVYIGNIPR-NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~-~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
....+.++|||+|||. ++++++|+++|+.||.|.+++++.+. +|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445678999999999 99999999999999999999998765 78999999999999999999999999999999
Q ss_pred EEecCCcchhhhhh---------------------hhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEE
Q 025070 155 VNITEKPLVQVDLS---------------------LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKG-QVLSAK 212 (258)
Q Consensus 155 v~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~ 212 (258)
|.++.......... ...........+.++|+|+|||..+++++|+++|++|| .|..+.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 99987542111000 00000112234568999999999999999999999999 999999
Q ss_pred EeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEEEeC
Q 025070 213 VLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE-GQRIRVNKA 258 (258)
Q Consensus 213 i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 258 (258)
++. ..+|+|||+|.+.++|.+|+..|||..++ |+.|+|.||
T Consensus 184 i~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 184 FFQ-----KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp ECS-----SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred EEE-----CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 975 24689999999999999999999999999 999999997
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=2.8e-33 Score=229.85 Aligned_cols=174 Identities=19% Similarity=0.258 Sum_probs=147.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 77 PSEFARRVYIGNIPRNIDNDELT----KIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~----~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
+..+.++|||+|||.++|+++|+ ++|+.||.|.+|++++ +|.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45667999999999999999976 8999999999999875 6789999999999999999999999999999999
Q ss_pred EEEEecCCcchhhhhhhh-----------------------h--------------------------------------
Q 025070 153 IKVNITEKPLVQVDLSLL-----------------------Q-------------------------------------- 171 (258)
Q Consensus 153 l~v~~~~~~~~~~~~~~~-----------------------~-------------------------------------- 171 (258)
|.|.++............ .
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999998654421000000 0
Q ss_pred ------------------------------------hccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEee
Q 025070 172 ------------------------------------AEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLR 215 (258)
Q Consensus 172 ------------------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~ 215 (258)
..........++|||+|||..+++++|+++|++||.|.++.+..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 00012233557899999999999999999999999999999996
Q ss_pred CCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEEEeC
Q 025070 216 VPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE-GQRIRVNKA 258 (258)
Q Consensus 216 ~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 258 (258)
+. +|+|||+|.+.++|.+|+..|||..++ |+.|+|+||
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 33 589999999999999999999999999 999999997
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.1e-32 Score=226.40 Aligned_cols=152 Identities=21% Similarity=0.342 Sum_probs=143.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
+.++|||+|||.++|+++|+++|+.|| |.++.+ +.++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 458999999999999999999999999 988887 4578999999999999999999999999999999999853
Q ss_pred CcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 025070 160 KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAA 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A 239 (258)
...+|||+|||..+++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|.+|
T Consensus 94 --------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 153 (284)
T 3smz_A 94 --------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 153 (284)
T ss_dssp --------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred --------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHH
Confidence 237899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCeeeEEEeC
Q 025070 240 ISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 240 ~~~l~g~~~~g~~l~v~~a 258 (258)
+..|+|..++|+.|.|.||
T Consensus 154 ~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 154 KSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp HHHHTTCEETTEECEEEEC
T ss_pred HHHhCCCEeCCcEEEEEEC
Confidence 9999999999999999986
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=2.6e-33 Score=218.36 Aligned_cols=168 Identities=21% Similarity=0.334 Sum_probs=143.3
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 81 ARRVYIGNIPR-NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 81 ~~~l~V~nl~~-~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
.++|||+|||+ ++++++|+++|+.||.|.+++++.+. +|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 99999999999999999999998764 7899999999999999999999999999999999987
Q ss_pred Ccchhhhhhh---------------------hhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeeCC
Q 025070 160 KPLVQVDLSL---------------------LQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKG-QVLSAKVLRVP 217 (258)
Q Consensus 160 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~i~~~~ 217 (258)
.......... .........++.++|+|+|||..+++++|+++|++|| .|..+.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 5432111000 0000112234578999999999999999999999999 9999998753
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEEEeC
Q 025070 218 GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE-GQRIRVNKA 258 (258)
Q Consensus 218 ~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a 258 (258)
.+|+|||+|.+.++|.+|+..|||..++ |+.|+|.||
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 3689999999999999999999999999 999999986
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=4e-32 Score=220.45 Aligned_cols=158 Identities=22% Similarity=0.406 Sum_probs=143.3
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
........++|||+|||+++|+++|+++|+.||.|..+.+.+ ++|||||+|.+.++|++|+..+++..+.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 344556778999999999999999999999999999999954 46899999999999999999999999999999
Q ss_pred EEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCH
Q 025070 154 KVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233 (258)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~ 233 (258)
.|.++.+ ..+|+|+|||..+++++|+++|+.||.|..+.++.+ .+|.++|+|||+|.+.
T Consensus 89 ~v~~a~~--------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 89 RIRFATH--------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAK 147 (261)
T ss_dssp EEEECCC--------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSH
T ss_pred Eeeeccc--------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCH
Confidence 9999853 368999999999999999999999999999999998 4889999999999999
Q ss_pred HHHHHHHHHhcC-CccC---CeeeEEEeC
Q 025070 234 EDAEAAISSLNN-SLLE---GQRIRVNKA 258 (258)
Q Consensus 234 ~~A~~A~~~l~g-~~~~---g~~l~v~~a 258 (258)
++|.+|+..||+ ..+. |+.|.|.+|
T Consensus 148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 148 PPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp HHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred HHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 999999999955 4444 999999886
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.5e-32 Score=223.70 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=138.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
........++|||+|||.++|+++|+++|+.||.|.+|+++.+. .+ ++|||||+|.+.++|++|+ .+++..+.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL-KK-NFRFARIEFARYDGALAAI-TKTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT-TS-SSEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEE
Confidence 34455678999999999999999999999999999999999987 44 5799999999999999999 599999999999
Q ss_pred EEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeeCCCCCCCccEEEEEeCC
Q 025070 154 KVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKG-QVLSAKVLRVPGTSKSSGFGFVTFSS 232 (258)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~~~~fV~f~~ 232 (258)
.|.++. .++|||+|||..+++++|+++|..|| .|..+.++.+.. |.++|||||+|.+
T Consensus 111 ~v~~~~---------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~ 168 (292)
T 2ghp_A 111 IVSHLT---------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTS 168 (292)
T ss_dssp EEEECC---------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSS
T ss_pred EEEECC---------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECC
Confidence 999762 47899999999999999999999999 999999998775 7889999999999
Q ss_pred HHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 233 EEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 233 ~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.++|.+|+..|||..++|+.|.|.||
T Consensus 169 ~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 169 KEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 99999999999999999999999986
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=4.4e-25 Score=165.63 Aligned_cols=146 Identities=21% Similarity=0.279 Sum_probs=114.4
Q ss_pred EeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCC
Q 025070 110 KAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNL 189 (258)
Q Consensus 110 ~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 189 (258)
.+.+..+. ..++|||||+|.+.++|++|++.+++....+....+........... ...............+|||+||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-GSHHHHHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-CCCCSSCCCCCCBCCEEEEESC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-cccccccccCCCCCCEEEEeCC
Confidence 45666665 36899999999999999999998876554444444432222111100 0011112223345689999999
Q ss_pred CCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 190 AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 190 ~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
|+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 999999999999999999999999999889999999999999999999999999999999999999986
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=1.9e-24 Score=153.34 Aligned_cols=109 Identities=24% Similarity=0.334 Sum_probs=75.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
..++|||+|||+++|+++|+++|+.||.|.+|+++.+. +.++|||||+|.+.++|++|++.|++..++|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999986 4489999999999999999999999999999999999987
Q ss_pred CcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHH
Q 025070 160 KPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSE 196 (258)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 196 (258)
+....... .........+|||+|||+.+|++
T Consensus 82 ~~~~~~~~------~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 82 SRKEREAE------LGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CCCC---------------------------------
T ss_pred Cccccccc------cccccCCCCceEeCCCCCCcccc
Confidence 65433211 11112334679999999999876
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=1.8e-23 Score=155.38 Aligned_cols=134 Identities=25% Similarity=0.309 Sum_probs=112.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCeeEEEEecCCcchhhhh--hhhhhccCCCCCCCCeEEEcCCCCCCCH
Q 025070 119 TGRSRRFAFVMMKTVEDANAVIEKL-NGTEIGGREIKVNITEKPLVQVDL--SLLQAEDSNFVDSPYKVYVGNLAKTVTS 195 (258)
Q Consensus 119 ~~~~~g~afV~f~~~~~A~~ai~~l-~~~~~~g~~l~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 195 (258)
....+|+++|+|.+.++|++|++.+ |+..++| .+.+.++......... ..............++|||+|||+.+++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999999999 9999999 9999988654322111 0011122333456689999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 196 ~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|+++|++||.|..+.++.+ ++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 999999999999999999875 5799999999999999999999999999999999997
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=142.17 Aligned_cols=82 Identities=32% Similarity=0.497 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
...++|||+|||.++|+++|+++|++||.|.++++++|..+|.++|||||+|.+.++|++|++.|||..++|++|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44578999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CC
Q 025070 159 EK 160 (258)
Q Consensus 159 ~~ 160 (258)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-22 Score=152.83 Aligned_cols=145 Identities=19% Similarity=0.343 Sum_probs=117.3
Q ss_pred ccccceecccccccCCceeeeeeCCCc------cceecccccccccccc-ccccccccccC----CCCCCCCCCCCCCce
Q 025070 15 QNLIFSKTHFTFQSRQPILQIRFPKLS------YSLHNLKTASIEDSTT-RLFAVAEETAS----SSSSSVDTPSEFARR 83 (258)
Q Consensus 15 ~~~~~s~~~~~F~~~G~i~~i~~p~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~ 83 (258)
.+.........|++||+|.+|+++.+. ++++.|.....+..+. .+......... ...........+.++
T Consensus 10 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~ 89 (166)
T 3md3_A 10 KAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN 89 (166)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEE
T ss_pred CcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCce
Confidence 444445556689999999999998776 7999998887776665 22222222111 111222345566789
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|+|||+|.+.++|++|++.|||..++|+.|.|.++.
T Consensus 90 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 90 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999999999999999999998899999999999999999999999999999999999999985
No 26
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.88 E-value=8.7e-23 Score=160.50 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=111.0
Q ss_pred cccccccCCceeeeeeCCCc-------cceeccccccccccccccccccccccCCC-----CCCCCCCCCCCceEEEcCC
Q 025070 22 THFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVAEETASSS-----SSSVDTPSEFARRVYIGNI 89 (258)
Q Consensus 22 ~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~V~nl 89 (258)
+...|++||+|.+|+++++. ++++.|.....+..+.............. ............+|||+||
T Consensus 32 L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl 111 (213)
T 4f02_A 32 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 111 (213)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESC
T ss_pred HHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCc
Confidence 44589999999999999875 89999998877776654322222111111 1111112234578999999
Q ss_pred CCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcch
Q 025070 90 PRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLV 163 (258)
Q Consensus 90 ~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~ 163 (258)
|.++|+++|+++|+.||.|..++++++. +.++|||||+|.+.++|++|++.|||..++|+.|.|.++.++..
T Consensus 112 ~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 112 DKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred ccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 9999999999999999999999999985 44799999999999999999999999999999999999987644
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=7e-22 Score=136.08 Aligned_cols=80 Identities=35% Similarity=0.496 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||+.+++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
No 28
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.87 E-value=3e-22 Score=157.56 Aligned_cols=148 Identities=14% Similarity=0.302 Sum_probs=116.5
Q ss_pred cccceecccccccCCceeeeeeCCCc-------cceeccccccccccccc-cccccccccCCCCCCCC------------
Q 025070 16 NLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTR-LFAVAEETASSSSSSVD------------ 75 (258)
Q Consensus 16 ~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------ 75 (258)
++........|++||+|.+|+++.+. ++++.|.....+..+.. +................
T Consensus 39 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~ 118 (216)
T 2qfj_A 39 ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQL 118 (216)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhh
Confidence 34444455699999999999998764 89999988877776665 33222222211110000
Q ss_pred -CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 76 -TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 76 -~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
......++|||+|||.++|+++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|.+|++.||+..++|+.|.
T Consensus 119 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 119 AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 0124558999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 199 V~~a~~~~~ 207 (216)
T 2qfj_A 199 VGKAVTPPM 207 (216)
T ss_dssp EEECSSCSS
T ss_pred EEEecCCCC
Confidence 999977643
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=137.84 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=80.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
.+.++|||+|||+++++++|+++|++||.|.+++++.|..+|+++|||||+|.+.++|++|++.||+..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCcchh
Q 025070 159 EKPLVQ 164 (258)
Q Consensus 159 ~~~~~~ 164 (258)
......
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 765443
No 30
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.87 E-value=3.7e-22 Score=154.70 Aligned_cols=143 Identities=13% Similarity=0.236 Sum_probs=108.4
Q ss_pred ecccccccCCceeeeeeCCCc-------cceeccccccccccccccccccccccC--------CCCCCCCCCCCCCceEE
Q 025070 21 KTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVAEETAS--------SSSSSVDTPSEFARRVY 85 (258)
Q Consensus 21 ~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~ 85 (258)
.....|++||+|.+|+++.+. ++|+.|.....+..+............ .............++||
T Consensus 29 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~ 108 (196)
T 1l3k_A 29 SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIF 108 (196)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEE
T ss_pred HHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEE
Confidence 344599999999999998764 899999998776666544222211111 00111122334568999
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchh
Q 025070 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQ 164 (258)
Q Consensus 86 V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~ 164 (258)
|+|||.++|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|+.. ++..++|+.|.|.++.+....
T Consensus 109 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 109 VGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred EeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 999999999999999999999999999999988899999999999999999999965 899999999999999776543
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=136.57 Aligned_cols=83 Identities=23% Similarity=0.425 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCeeEEEEec
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL-NGTEIGGREIKVNIT 158 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l-~~~~~~g~~l~v~~~ 158 (258)
+++|||+|||+++|+++|+++|++|| .|.+|++++|+.+|.++|||||+|.+.++|++|++.+ ++..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999989999999999999999999999877 456799999999999
Q ss_pred CCcch
Q 025070 159 EKPLV 163 (258)
Q Consensus 159 ~~~~~ 163 (258)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76643
No 32
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.86 E-value=8.9e-22 Score=148.75 Aligned_cols=145 Identities=23% Similarity=0.351 Sum_probs=115.7
Q ss_pred eccccceecccccccCCceeeeeeCCCc-------cceeccccccccccccc-cccccccccCC--CCCCCCCCCCCCce
Q 025070 14 QQNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTR-LFAVAEETASS--SSSSVDTPSEFARR 83 (258)
Q Consensus 14 ~~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 83 (258)
+.+.........|++||+|.+|+++.+. ++++.|.....+..+.. +.......... ............++
T Consensus 12 p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~ 91 (168)
T 1b7f_A 12 PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTN 91 (168)
T ss_dssp CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCE
T ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCC
Confidence 3344455566689999999999998774 79999998877776664 23222222111 01112233456789
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEec
Q 025070 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG--REIKVNIT 158 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g--~~l~v~~~ 158 (258)
|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|+|||+|.+.++|++|++.|||..+.| ++|.|.++
T Consensus 92 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 92 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999999999999999998889999999999999999999999999999977 99999875
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=8.7e-22 Score=134.15 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCC--eeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----ccCC
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGA--VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT----EIGG 150 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~--i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~----~~~g 150 (258)
......+|||+|||+++|+++|+++|++||. +.+|++++|+.+|.++|||||+|.+.++|++|++.||+. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456689999999999999999999999995 679999999989999999999999999999999999987 4899
Q ss_pred eeEEEEecCC
Q 025070 151 REIKVNITEK 160 (258)
Q Consensus 151 ~~l~v~~~~~ 160 (258)
++|.|.+++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 34
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.86 E-value=1.2e-21 Score=147.86 Aligned_cols=145 Identities=21% Similarity=0.317 Sum_probs=114.4
Q ss_pred eccccceecccccccCCceeeeeeCCCc-------cceeccccccccccccc-cccccccccCC--CCCCCCCCCCCCce
Q 025070 14 QQNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTR-LFAVAEETASS--SSSSVDTPSEFARR 83 (258)
Q Consensus 14 ~~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 83 (258)
+.+.........|++||+|.+++++.+. ++++.|.....+..+.. +.......... ............++
T Consensus 11 p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~ 90 (167)
T 1fxl_A 11 PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN 90 (167)
T ss_dssp CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCE
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCc
Confidence 3444455566689999999999998875 89999998877776664 23222222111 01112233456689
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee--EEEEec
Q 025070 84 VYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE--IKVNIT 158 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~--l~v~~~ 158 (258)
|||+|||.++++++|+++|+.||.|..++++.+..+|.++|+|||+|.+.++|++|++.|||..+.|+. |.|.+|
T Consensus 91 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 91 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999999999999999999888999999999999999999999999999999975 777764
No 35
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.86 E-value=2.1e-22 Score=152.18 Aligned_cols=145 Identities=15% Similarity=0.258 Sum_probs=114.2
Q ss_pred ccccceecccccccCCceeeeeeCCCc-------cceeccccccccccccccccccccccCCCC--CCCCCCCCCCceEE
Q 025070 15 QNLIFSKTHFTFQSRQPILQIRFPKLS-------YSLHNLKTASIEDSTTRLFAVAEETASSSS--SSVDTPSEFARRVY 85 (258)
Q Consensus 15 ~~~~~s~~~~~F~~~G~i~~i~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 85 (258)
.+.........|++||+|.+|+++.+. ++++.|.....+..+..-. ....+..... ..........++||
T Consensus 13 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~i~v~~~~~~~~~~~~~~l~ 91 (167)
T 2cjk_A 13 WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDPKRAIPRDEQDKTGKIF 91 (167)
T ss_dssp TTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC-CEETTEECCCEECCCHHHHHHCEEEE
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc-cccCCeEcccccccchhhccCCCeEE
Confidence 334444455689999999999999874 8999999987776665421 1111111100 11111224567999
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 86 IGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 86 V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
|+|||.++++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|++|++ +++..++|+.|.|.++.++
T Consensus 92 V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 92 VGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999999999999999999999999999998889999999999999999999996 8999999999999999764
No 36
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=128.69 Aligned_cols=83 Identities=25% Similarity=0.474 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
.+.++|||+|||.++++++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|++|++.||+..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCc
Q 025070 159 EKP 161 (258)
Q Consensus 159 ~~~ 161 (258)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 37
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.85 E-value=1.1e-21 Score=149.14 Aligned_cols=145 Identities=14% Similarity=0.216 Sum_probs=112.6
Q ss_pred eccccceecccccccCCceeeeeeCCCc---------cceeccccccccccccccc-ccccccc--CC----CCCCCCCC
Q 025070 14 QQNLIFSKTHFTFQSRQPILQIRFPKLS---------YSLHNLKTASIEDSTTRLF-AVAEETA--SS----SSSSVDTP 77 (258)
Q Consensus 14 ~~~~~~s~~~~~F~~~G~i~~i~~p~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~----~~~~~~~~ 77 (258)
+.+.........|++||+|.+|+++.+. ++++.|.....+..+.... ....... .+ ........
T Consensus 12 p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 91 (175)
T 3nmr_A 12 PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN 91 (175)
T ss_dssp CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS
T ss_pred CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc
Confidence 3444445566689999999999998663 8999999987776665422 2111111 00 01112233
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC---CeeEE
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG---GREIK 154 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~---g~~l~ 154 (258)
....++|||+|||.++|+++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|++|++.|||..+. +++|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 4467899999999999999999999999999999999997 7999999999999999999999999998875 49999
Q ss_pred EEecC
Q 025070 155 VNITE 159 (258)
Q Consensus 155 v~~~~ 159 (258)
|.++.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99873
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=8.1e-21 Score=133.18 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++.++|||+|||+.+++++|+++|++||.|.++.+++|+.+|.++|||||+|++.++|.+|++.|||..++|+.|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
No 39
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=129.10 Aligned_cols=87 Identities=25% Similarity=0.434 Sum_probs=81.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
....+.+.++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455677899999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEecCC
Q 025070 154 KVNITEK 160 (258)
Q Consensus 154 ~v~~~~~ 160 (258)
.|.++++
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 40
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=132.42 Aligned_cols=90 Identities=31% Similarity=0.531 Sum_probs=82.9
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 025070 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGR 151 (258)
Q Consensus 72 ~~~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 151 (258)
........+.++|||+|||.++++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|++|++.|+|..+.|+
T Consensus 17 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 33445566779999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eEEEEecCCc
Q 025070 152 EIKVNITEKP 161 (258)
Q Consensus 152 ~l~v~~~~~~ 161 (258)
.|.|.++.++
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999998764
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=9.2e-21 Score=126.33 Aligned_cols=80 Identities=24% Similarity=0.559 Sum_probs=77.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
.+|||+|||.++++++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|++|++.|||..++|+.|.|.++.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999765
No 42
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=7.5e-21 Score=127.36 Aligned_cols=82 Identities=30% Similarity=0.533 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
..+.++|||+|||.++++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|++|++.||+..++|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45668999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q 025070 158 TE 159 (258)
Q Consensus 158 ~~ 159 (258)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=1.2e-20 Score=129.37 Aligned_cols=86 Identities=26% Similarity=0.543 Sum_probs=80.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
++++|||+|||.++++++|+++|+.||.|.+++++.+..+|.++|||||+|.+.++|++|++.|+|..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35899999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred Ccchhh
Q 025070 160 KPLVQV 165 (258)
Q Consensus 160 ~~~~~~ 165 (258)
+.....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 776543
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2e-20 Score=132.59 Aligned_cols=91 Identities=23% Similarity=0.438 Sum_probs=84.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
...+..+.++|||+|||.++++++|+++|+.||.|..|+++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556678999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecCCcchh
Q 025070 154 KVNITEKPLVQ 164 (258)
Q Consensus 154 ~v~~~~~~~~~ 164 (258)
.|.++.+....
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999776543
No 45
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=129.98 Aligned_cols=86 Identities=19% Similarity=0.330 Sum_probs=80.3
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeE--------eEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK--------AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~--------~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~ 145 (258)
....+...++|||+|||.++++++|+++|+.||.|.. ++++.+..+|.++|||||+|.+.++|++|++.|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 4456667799999999999999999999999999999 99999988899999999999999999999999999
Q ss_pred CccCCeeEEEEecC
Q 025070 146 TEIGGREIKVNITE 159 (258)
Q Consensus 146 ~~~~g~~l~v~~~~ 159 (258)
..+.|+.|.|.+++
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999873
No 46
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.85 E-value=4.2e-21 Score=145.67 Aligned_cols=144 Identities=16% Similarity=0.333 Sum_probs=115.6
Q ss_pred ccccceecccccccC----C-------ceeeeeeCCCc-cceeccccccccccccccccccccccCCC--CCCCCCCCCC
Q 025070 15 QNLIFSKTHFTFQSR----Q-------PILQIRFPKLS-YSLHNLKTASIEDSTTRLFAVAEETASSS--SSSVDTPSEF 80 (258)
Q Consensus 15 ~~~~~s~~~~~F~~~----G-------~i~~i~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 80 (258)
.+.........|++| | +|.+++...+. ++++.|...+.+..+..+........... ..........
T Consensus 14 ~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~~~~ 93 (172)
T 2g4b_A 14 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPG 93 (172)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCCCTT
T ss_pred cccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCCCCC
Confidence 334444455589999 6 88888887665 99999999888777765444333332211 1112233345
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
.++|||+|||.++|+++|+++|++||.|..+.++.+..+|.++|+|||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 789999999999999999999999999999999999889999999999999999999999999999999999999987
No 47
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.3e-21 Score=130.65 Aligned_cols=87 Identities=21% Similarity=0.299 Sum_probs=81.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
...+.++|||+|||.++|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCcch
Q 025070 157 ITEKPLV 163 (258)
Q Consensus 157 ~~~~~~~ 163 (258)
++.+...
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987654
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=129.44 Aligned_cols=86 Identities=23% Similarity=0.452 Sum_probs=80.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++|+++|+++|+.||.|..++++.+. +|.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 444567899999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
.++.+..
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9997654
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=128.17 Aligned_cols=85 Identities=27% Similarity=0.440 Sum_probs=79.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34455678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEecC
Q 025070 155 VNITE 159 (258)
Q Consensus 155 v~~~~ 159 (258)
|.+++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 50
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=131.31 Aligned_cols=90 Identities=21% Similarity=0.332 Sum_probs=83.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
......+.++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34455677999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.+...
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999976643
No 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.5e-21 Score=131.16 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=72.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCC--CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
.+|||+|||.++|+++|+++|+.|| .|.+++++.+..+|.++|||||+|.+.++|++|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999899999999999999999999999999999999999999997
Q ss_pred Ccch
Q 025070 160 KPLV 163 (258)
Q Consensus 160 ~~~~ 163 (258)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6644
No 52
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.84 E-value=6.8e-21 Score=135.05 Aligned_cols=106 Identities=24% Similarity=0.343 Sum_probs=93.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
++.+.++|||+|||.++++++|+++|+.||.|.++.++.+ +.++|||||+|.+.++|++|++.|||..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456689999999999999999999999999999999864 4568999999999999999999999999999999999
Q ss_pred ecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC
Q 025070 157 ITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQ 207 (258)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 207 (258)
++.+.... .+++...++++|.++|++||.
T Consensus 81 ~a~~~~~~----------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF----------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT----------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh----------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 99754332 366778889999999999984
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=128.04 Aligned_cols=85 Identities=29% Similarity=0.507 Sum_probs=80.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
.+.++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCcch
Q 025070 159 EKPLV 163 (258)
Q Consensus 159 ~~~~~ 163 (258)
.+...
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76643
No 54
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=129.11 Aligned_cols=87 Identities=22% Similarity=0.471 Sum_probs=80.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++ +++..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345667999999999999999999999999999999999998889999999999999999999997 9999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99976644
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=130.74 Aligned_cols=89 Identities=19% Similarity=0.331 Sum_probs=82.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|||.++++++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34556779999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999976643
No 56
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1.8e-20 Score=132.83 Aligned_cols=88 Identities=26% Similarity=0.414 Sum_probs=82.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44456789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99976644
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=130.56 Aligned_cols=88 Identities=28% Similarity=0.476 Sum_probs=82.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99976654
No 58
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=131.16 Aligned_cols=86 Identities=20% Similarity=0.335 Sum_probs=80.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++.||+..++|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34456689999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EecCCc
Q 025070 156 NITEKP 161 (258)
Q Consensus 156 ~~~~~~ 161 (258)
.++.+.
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 998654
No 59
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=129.75 Aligned_cols=88 Identities=24% Similarity=0.488 Sum_probs=81.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99976543
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=129.67 Aligned_cols=90 Identities=20% Similarity=0.355 Sum_probs=82.9
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeee-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCe
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYD-KYTGRSRRFAFVMMKTVEDANAVIEKL-NGTEIGGR 151 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~-~~~~~~~g~afV~f~~~~~A~~ai~~l-~~~~~~g~ 151 (258)
........++|||+|||.++++++|+++|+.||.|..|+++.+ ..+|.++|||||+|.+.++|++|++.| |+..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3445667799999999999999999999999999999999998 778999999999999999999999999 99999999
Q ss_pred eEEEEecCCcch
Q 025070 152 EIKVNITEKPLV 163 (258)
Q Consensus 152 ~l~v~~~~~~~~ 163 (258)
.|.|.++.+...
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999976643
No 61
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=4e-21 Score=130.86 Aligned_cols=78 Identities=23% Similarity=0.344 Sum_probs=73.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCC--eEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC----ccCCeeeE
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQ--VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS----LLEGQRIR 254 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~----~~~g~~l~ 254 (258)
-.+|||+|||+.+|+++|+++|++||. +.++++++|+.+|.++|||||+|.+.++|.+|++.|||. .++||.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 378999999999999999999999995 668999999999999999999999999999999999997 48999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|+||
T Consensus 89 V~~A 92 (95)
T 2lkz_A 89 VDFA 92 (95)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9998
No 62
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=130.47 Aligned_cols=88 Identities=22% Similarity=0.333 Sum_probs=81.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566799999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99976543
No 63
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.7e-20 Score=130.35 Aligned_cols=89 Identities=21% Similarity=0.363 Sum_probs=82.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC------CCcc
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN------GTEI 148 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~------~~~~ 148 (258)
.....+.++|||+|||.++++++|+++|+.||.|..|+++.+..+|.++|||||+|.+.++|++|++.+| +..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3455677899999999999999999999999999999999998889999999999999999999999999 9999
Q ss_pred CCeeEEEEecCCcch
Q 025070 149 GGREIKVNITEKPLV 163 (258)
Q Consensus 149 ~g~~l~v~~~~~~~~ 163 (258)
.|+.|.|.++.+...
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 999999999976643
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=128.92 Aligned_cols=87 Identities=20% Similarity=0.399 Sum_probs=80.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCee-EeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee--
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVE-KAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE-- 152 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~-~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~-- 152 (258)
....+.++|||+|||.++++++|+++|++||.|. +++++++..+|.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3455679999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred --EEEEecCCcc
Q 025070 153 --IKVNITEKPL 162 (258)
Q Consensus 153 --l~v~~~~~~~ 162 (258)
|+|.++.+..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999987653
No 65
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=2.1e-20 Score=140.93 Aligned_cols=131 Identities=17% Similarity=0.222 Sum_probs=77.9
Q ss_pred EEeCCHHHHHHHHHHhCCCccC--CeeEEEEecCCcchhhhhh------hhhhccCCCCCCCCeEEEcCCCCCCCHHHHH
Q 025070 128 VMMKTVEDANAVIEKLNGTEIG--GREIKVNITEKPLVQVDLS------LLQAEDSNFVDSPYKVYVGNLAKTVTSEMLK 199 (258)
Q Consensus 128 V~f~~~~~A~~ai~~l~~~~~~--g~~l~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 199 (258)
.+|.+.++|+.|+..+++.... |+.....+........... .............++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999998887654 6666655532211100000 0011222334556789999999999999999
Q ss_pred HHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 200 KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 200 ~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|.+||.|..+.+..+..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 99999999999999999889999999999999999999999999999999999999997
No 66
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=4.1e-20 Score=128.84 Aligned_cols=86 Identities=19% Similarity=0.397 Sum_probs=80.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC---eeE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG---REI 153 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g---~~l 153 (258)
...+.++|||+|||.++++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|++|++.||+..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44567999999999999999999999999999999999998 89999999999999999999999999999988 999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.+...
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999977654
No 67
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=128.50 Aligned_cols=85 Identities=26% Similarity=0.430 Sum_probs=79.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEe-EEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKA-EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~-~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
.+.++|||+|||.++++++|+++|+.||.|..+ +++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 9999977999999999999999999999999999999999999999
Q ss_pred cCCcch
Q 025070 158 TEKPLV 163 (258)
Q Consensus 158 ~~~~~~ 163 (258)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 976643
No 68
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=1.9e-20 Score=131.65 Aligned_cols=87 Identities=26% Similarity=0.323 Sum_probs=80.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++.|||..++|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456689999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
.++.+..
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9986543
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=127.43 Aligned_cols=84 Identities=27% Similarity=0.493 Sum_probs=78.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||+++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 445667899999999999999999999999999999999998 5999999999999999999999999999999999999
Q ss_pred EecCC
Q 025070 156 NITEK 160 (258)
Q Consensus 156 ~~~~~ 160 (258)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 98853
No 70
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.83 E-value=8.9e-21 Score=147.13 Aligned_cols=150 Identities=15% Similarity=0.315 Sum_probs=115.5
Q ss_pred eeccccceecccccccC----C-------ceeeeeeCCCc-cceeccccccccccccccccccccccC-----CCC----
Q 025070 13 SQQNLIFSKTHFTFQSR----Q-------PILQIRFPKLS-YSLHNLKTASIEDSTTRLFAVAEETAS-----SSS---- 71 (258)
Q Consensus 13 ~~~~~~~s~~~~~F~~~----G-------~i~~i~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---- 71 (258)
-+...........|++| | +|.+++..... ++++.|.....+..+..+......... ...
T Consensus 12 Lp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~ 91 (198)
T 2yh0_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL 91 (198)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCC
Confidence 34444555566689999 5 77777776555 888888887766666543322222111 000
Q ss_pred -------------CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHH
Q 025070 72 -------------SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANA 138 (258)
Q Consensus 72 -------------~~~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ 138 (258)
..........++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 171 (198)
T 2yh0_A 92 PGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 171 (198)
T ss_dssp CCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHH
T ss_pred CCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHH
Confidence 0011223567899999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCCccCCeeEEEEecCCcc
Q 025070 139 VIEKLNGTEIGGREIKVNITEKPL 162 (258)
Q Consensus 139 ai~~l~~~~~~g~~l~v~~~~~~~ 162 (258)
|++.|||..++|+.|.|.++.+..
T Consensus 172 A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 172 AIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999997654
No 71
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=5.1e-21 Score=132.13 Aligned_cols=84 Identities=19% Similarity=0.322 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-e
Q 025070 79 EFARRVYIGNIPR------NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG-R 151 (258)
Q Consensus 79 ~~~~~l~V~nl~~------~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g-~ 151 (258)
...++|||+|||. ++++++|+++|++||.|.+++++.+..+|.++|||||+|.+.++|++|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3457999999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred eEEEEecCCcc
Q 025070 152 EIKVNITEKPL 162 (258)
Q Consensus 152 ~l~v~~~~~~~ 162 (258)
.|.|.++.+..
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999986543
No 72
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=130.55 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL-NNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~a 258 (258)
++|||+|||+.+++++|+++|++|| .|.++.+++++.+|.++|||||+|.+.++|.+|++.+ ++..++|+.|+|+||
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 6899999999999999999999999 8999999999999999999999999999999999987 466799999999997
No 73
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.3e-20 Score=129.51 Aligned_cols=89 Identities=26% Similarity=0.411 Sum_probs=82.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc---CCe
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI---GGR 151 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~---~g~ 151 (258)
.......++|||+|||.++++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|++|++.||+..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34556778999999999999999999999999999999999998899999999999999999999999999987 899
Q ss_pred eEEEEecCCcch
Q 025070 152 EIKVNITEKPLV 163 (258)
Q Consensus 152 ~l~v~~~~~~~~ 163 (258)
.|.|.++.+...
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999976543
No 74
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=128.41 Aligned_cols=88 Identities=23% Similarity=0.440 Sum_probs=81.2
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
......+.++|||+|||.++|+++|+++|+.||.|..+.++.+ +|.++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3445567899999999999999999999999999999999998 78999999999999999999999999999999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.+...
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999977654
No 75
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=4.3e-21 Score=139.72 Aligned_cols=119 Identities=24% Similarity=0.385 Sum_probs=78.1
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhc
Q 025070 125 FAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSE 204 (258)
Q Consensus 125 ~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 204 (258)
++|.+|++...+..|++.+++....|+.- ..+..+. ......++|||+|||..+++++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~~--------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 70 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRPP--------------PDVEGMTSLKVDNLTYRTSPDTLRRVFEK 70 (135)
T ss_dssp ------------------------------CCSCCSC--------------SSGGGCCCEEEECCCSSCHHHHHHHHHGG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCCC--------------CCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 68889999999999999988876655431 1111111 11233478999999999999999999999
Q ss_pred CCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 205 KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 205 ~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
||.|..+.+..++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 71 ~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 71 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 999999999999889999999999999999999999999999999999999997
No 76
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=3e-20 Score=134.14 Aligned_cols=88 Identities=25% Similarity=0.446 Sum_probs=82.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
...+.+.++|||+|||.++++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556778999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEecCCcc
Q 025070 155 VNITEKPL 162 (258)
Q Consensus 155 v~~~~~~~ 162 (258)
|.++.+..
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997653
No 77
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=4.3e-20 Score=123.63 Aligned_cols=80 Identities=39% Similarity=0.530 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999997
No 78
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=5.2e-20 Score=123.77 Aligned_cols=82 Identities=23% Similarity=0.458 Sum_probs=75.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++++++|+++|++||.|..++++.+..+|.++|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 445677899999999999999999999999999999999998889999999999999999999995 5888999999999
Q ss_pred Eec
Q 025070 156 NIT 158 (258)
Q Consensus 156 ~~~ 158 (258)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 79
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=128.14 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKY---TGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~---~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
.+.++|||+|||.++++++|+++|+.||.|..+.++.+.. ++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999885 5589999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976643
No 80
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.1e-20 Score=127.15 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=79.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCc
Q 025070 157 ITEKP 161 (258)
Q Consensus 157 ~~~~~ 161 (258)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98654
No 81
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=129.87 Aligned_cols=87 Identities=29% Similarity=0.534 Sum_probs=81.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
...++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45589999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCcchhh
Q 025070 159 EKPLVQV 165 (258)
Q Consensus 159 ~~~~~~~ 165 (258)
.+.....
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 8776543
No 82
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=128.77 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
....++|||+|||+++|+++|+++|++||+|.+|.++++.. |.++|||||+|.+.++|++|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34558999999999999999999999999999999999985 9999999999999999999997 899999999999998
Q ss_pred cCCc
Q 025070 158 TEKP 161 (258)
Q Consensus 158 ~~~~ 161 (258)
+...
T Consensus 86 ~~~~ 89 (103)
T 1s79_A 86 KDDY 89 (103)
T ss_dssp HHHH
T ss_pred chHH
Confidence 7654
No 83
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=129.42 Aligned_cols=88 Identities=22% Similarity=0.366 Sum_probs=81.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCee--------EeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVE--------KAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTE 147 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~ 147 (258)
......++|||+|||.++|+++|+++|+.||.|. .++++.+..+|.++|||||+|.+.++|++|++.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4556779999999999999999999999999999 69999998799999999999999999999999999999
Q ss_pred cCCeeEEEEecCCcch
Q 025070 148 IGGREIKVNITEKPLV 163 (258)
Q Consensus 148 ~~g~~l~v~~~~~~~~ 163 (258)
+.|+.|.|.++.+...
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999977654
No 84
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=5.1e-20 Score=131.10 Aligned_cols=85 Identities=25% Similarity=0.450 Sum_probs=79.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|||.++++++|+++|+.||.|.+++++.+..+|.++|||||+|.+.++|++|++.||+..++|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEecC
Q 025070 155 VNITE 159 (258)
Q Consensus 155 v~~~~ 159 (258)
|.+++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99873
No 85
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=129.82 Aligned_cols=86 Identities=28% Similarity=0.580 Sum_probs=80.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
+....++|||+|||.++++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ecCCcch
Q 025070 157 ITEKPLV 163 (258)
Q Consensus 157 ~~~~~~~ 163 (258)
++.+...
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9976654
No 86
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1e-19 Score=126.34 Aligned_cols=87 Identities=23% Similarity=0.486 Sum_probs=80.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|||.++++++|+++|+.|| |..++++.+..+|.++|||||+|.+.++|++|+ .||+..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34556679999999999999999999999997 999999999988999999999999999999999 8999999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999976543
No 87
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=125.12 Aligned_cols=88 Identities=28% Similarity=0.539 Sum_probs=79.9
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
........++|||+|||.++++++|+++|+.||.|..++++.+. .+ ++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-RG-SKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT-TT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556677999999999999999999999999999999999986 33 89999999999999999999999999999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.+...
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999976644
No 88
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=125.41 Aligned_cols=88 Identities=24% Similarity=0.449 Sum_probs=79.2
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
........++|||+|||.++++++|+++|+.||.|..|+++.+.. .++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 344556779999999999999999999999999999999999863 368999999999999999999999999999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.+...
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9999976543
No 89
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.2e-20 Score=129.35 Aligned_cols=88 Identities=27% Similarity=0.428 Sum_probs=81.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
........++|||+|||.++|+++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.+++ .+.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 345566779999999999999999999999999999999999988899999999999999999999999998 8999999
Q ss_pred EEEecCCcc
Q 025070 154 KVNITEKPL 162 (258)
Q Consensus 154 ~v~~~~~~~ 162 (258)
.|.++....
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999996543
No 90
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=1e-19 Score=121.18 Aligned_cols=77 Identities=35% Similarity=0.623 Sum_probs=75.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+|||+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 57999999999999999999999999999999999889999999999999999999999999999999999999997
No 91
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=124.15 Aligned_cols=83 Identities=22% Similarity=0.476 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR-SRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~-~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
..++|||+|||.++|+++|+++|+.||.|.++.++.+..++. ++|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999999986655 8999999999999999999999999999999999998
Q ss_pred CCcc
Q 025070 159 EKPL 162 (258)
Q Consensus 159 ~~~~ 162 (258)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6653
No 92
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-20 Score=126.88 Aligned_cols=87 Identities=13% Similarity=0.387 Sum_probs=80.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYT-GRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~-~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
..+..+.++|||+|||.++++++|+++|+.|| |..+.++.+..+ |.++|||||+|.+.++|++|+ .||+..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34456679999999999999999999999999 999999999876 999999999999999999999 999999999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.+...
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999976643
No 93
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=123.75 Aligned_cols=81 Identities=31% Similarity=0.476 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.+..++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45668999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 7
No 94
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=7e-20 Score=123.68 Aligned_cols=80 Identities=26% Similarity=0.526 Sum_probs=76.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCC
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 160 (258)
.++|||+|||.++++++|+++|+.||.|.+++++.+..+|.++|||||+|.+.++|++|+ .+|+..+.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999889999999999999999999999 9999999999999999865
Q ss_pred c
Q 025070 161 P 161 (258)
Q Consensus 161 ~ 161 (258)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 95
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=132.92 Aligned_cols=90 Identities=23% Similarity=0.454 Sum_probs=83.3
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
........++|||+|||.++++++|+++|+.||.|.+++++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34455677999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.+...
T Consensus 115 ~v~~a~~~~~ 124 (139)
T 1u6f_A 115 KVALAASGHQ 124 (139)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9999977644
No 96
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=9.3e-20 Score=122.54 Aligned_cols=79 Identities=37% Similarity=0.625 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+.++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4578999999999999999999999999999999999889999999999999999999999999999999999999986
No 97
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-19 Score=126.63 Aligned_cols=87 Identities=23% Similarity=0.410 Sum_probs=80.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344567899999999999999999999999999999999998 6999999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.....
T Consensus 89 ~~a~~~~~ 96 (114)
T 2do0_A 89 KMDERALP 96 (114)
T ss_dssp EECSCCCC
T ss_pred EEcccCCC
Confidence 99875433
No 98
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=4.7e-20 Score=138.12 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=81.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......++|||+|||+++|+++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|++|++.|||..+.|+.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
.++.+..
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9997654
No 99
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=1.3e-19 Score=126.75 Aligned_cols=82 Identities=24% Similarity=0.460 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
...+.++|||+|||.++++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ecC
Q 025070 157 ITE 159 (258)
Q Consensus 157 ~~~ 159 (258)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 100
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=123.22 Aligned_cols=80 Identities=33% Similarity=0.554 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999997
No 101
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=129.13 Aligned_cols=100 Identities=20% Similarity=0.326 Sum_probs=83.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
++|||+|||.++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.||+..+.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6799999999999999999999999999999999999876
Q ss_pred chhhhhhhhhhccCCCCCCCCeEEEcCCC
Q 025070 162 LVQVDLSLLQAEDSNFVDSPYKVYVGNLA 190 (258)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 190 (258)
....... ..........+|||+||+
T Consensus 76 ~~~~~~~----~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFD----RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCC----SCCCSCCCCSCCCSCCCC
T ss_pred CCcccCC----CCCccccCCCceecCCCC
Confidence 5332111 111222345789999986
No 102
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.7e-20 Score=124.52 Aligned_cols=81 Identities=30% Similarity=0.402 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..+.++|||+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34558999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 92 a 92 (95)
T 2cqc_A 92 P 92 (95)
T ss_dssp C
T ss_pred c
Confidence 7
No 103
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=127.87 Aligned_cols=88 Identities=19% Similarity=0.335 Sum_probs=81.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|||.++++++|+++|+.||.|..|+++.+..++.++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34566779999999999999999999999999999999999988999999999999999999999988 99999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999976654
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8e-20 Score=128.13 Aligned_cols=88 Identities=27% Similarity=0.480 Sum_probs=78.9
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 025070 72 SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGR 151 (258)
Q Consensus 72 ~~~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 151 (258)
+.........++|||+|||.++++++|+++|+.||.|..++++.+. +.++|||||+|.+.++|++|++.|||..++|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3444556678999999999999999999999999999999999985 34899999999999999999999999999999
Q ss_pred eEEEEecCCc
Q 025070 152 EIKVNITEKP 161 (258)
Q Consensus 152 ~l~v~~~~~~ 161 (258)
.|.|.++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998754
No 105
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=7.8e-20 Score=136.14 Aligned_cols=84 Identities=18% Similarity=0.367 Sum_probs=78.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCC--CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
..++|||+|||.++|+++|+++|+.|| .|.+++++.|..+|.++|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred cCCcch
Q 025070 158 TEKPLV 163 (258)
Q Consensus 158 ~~~~~~ 163 (258)
+.+...
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 976543
No 106
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=124.60 Aligned_cols=82 Identities=24% Similarity=0.316 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLS--------AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~ 248 (258)
.....++|||+|||..+++++|+++|++||.|.. +.+..++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3455689999999999999999999999999999 99999998999999999999999999999999999999
Q ss_pred CCeeeEEEeC
Q 025070 249 EGQRIRVNKA 258 (258)
Q Consensus 249 ~g~~l~v~~a 258 (258)
+|+.|+|+||
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999997
No 107
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=4.3e-20 Score=126.29 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
..+.++|||+|||.++++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|++|++.||+..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34558999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q 025070 158 TE 159 (258)
Q Consensus 158 ~~ 159 (258)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 108
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.9e-20 Score=127.43 Aligned_cols=86 Identities=15% Similarity=0.366 Sum_probs=80.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhh-CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc-cCCeeEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTE-IGGREIK 154 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~-~~g~~l~ 154 (258)
+..+.++|||+|||.++|+++|+++|+. ||.|.+++++.+. +|.++|||||+|.+.++|++|++.|++.. +.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999999 99999999999999999999999999999 9999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976543
No 109
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.5e-19 Score=123.88 Aligned_cols=78 Identities=26% Similarity=0.435 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 478999999999999999999999999999999999889999999999999999999999999999999999999997
No 110
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.8e-20 Score=126.44 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCeeEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN--GTEIGGREIK 154 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~--~~~~~g~~l~ 154 (258)
.+.+.++|||+|||+++|+++|+++|++||.|.+++++++ +|||||+|.+.++|++|++.++ +..+.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4556789999999999999999999999999999999864 6899999999999999999886 4789999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.++..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999976644
No 111
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=123.86 Aligned_cols=83 Identities=24% Similarity=0.320 Sum_probs=76.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 77 PSEFARRVYIGNIPRNIDNDELT----KIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~----~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
+....++|||+|||.++++++|+ ++|++||.|.+++++.+..+ +|||||+|.+.++|++|++.||+..++|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34556899999999999999999 99999999999999998743 889999999999999999999999999999
Q ss_pred EEEEecCCcc
Q 025070 153 IKVNITEKPL 162 (258)
Q Consensus 153 l~v~~~~~~~ 162 (258)
|.|.++.+..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999997653
No 112
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=8.4e-20 Score=127.99 Aligned_cols=87 Identities=20% Similarity=0.328 Sum_probs=75.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.......++|||+|||.++|+++|+++|+.||.|.+++++.+..+|.++|||||+|.+.++|++|++.+ +..++|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 445567789999999999999999999999999999999999888999999999999999999999765 5889999999
Q ss_pred EEecCCcc
Q 025070 155 VNITEKPL 162 (258)
Q Consensus 155 v~~~~~~~ 162 (258)
|.++.+..
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99997654
No 113
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=4.3e-20 Score=120.63 Aligned_cols=75 Identities=23% Similarity=0.489 Sum_probs=71.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
+|||+|||+++++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999996 9999999999999875
No 114
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.5e-19 Score=122.90 Aligned_cols=84 Identities=26% Similarity=0.391 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
...+.++|||+|||.++++++|+++|+.||.|..++++.+ +|.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999984 78999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 025070 157 ITEKPL 162 (258)
Q Consensus 157 ~~~~~~ 162 (258)
++.+..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 997654
No 115
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=5e-19 Score=127.02 Aligned_cols=86 Identities=22% Similarity=0.431 Sum_probs=80.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......++|||+|||.++++++|+++|+.||.|..++++.+. +|.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 355677899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
.++....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997653
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-20 Score=125.38 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
.+.++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999988765
Q ss_pred C
Q 025070 159 E 159 (258)
Q Consensus 159 ~ 159 (258)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=123.47 Aligned_cols=80 Identities=29% Similarity=0.378 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999987
No 118
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.9e-19 Score=118.34 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
..+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3456799999999999999999999999999999864 6899999999999999999999999999999999988
Q ss_pred C
Q 025070 159 E 159 (258)
Q Consensus 159 ~ 159 (258)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=133.56 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=80.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeE--eEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----cc
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK--AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT----EI 148 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~--~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~----~~ 148 (258)
.......++|||+|||+++|+++|+++|+.||.|.. |++++|..+|.++|||||+|.+. +|++|++.||+. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344467789999999999999999999999999976 99999999999999999999999 999999999999 99
Q ss_pred CCeeEEEEecCCcch
Q 025070 149 GGREIKVNITEKPLV 163 (258)
Q Consensus 149 ~g~~l~v~~~~~~~~ 163 (258)
.|+.|.|.++.+...
T Consensus 96 ~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 DGKTINVEFAKGSKR 110 (131)
T ss_dssp GGCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999976543
No 120
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=121.35 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|||+|||.++++++|+++|+.| .|..++++.+ .+|.++|||||+|.+.++|++|++ +|+..++|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44566899999999999999999999999 9999999999 589999999999999999999998 99999999999999
Q ss_pred ecCCcc
Q 025070 157 ITEKPL 162 (258)
Q Consensus 157 ~~~~~~ 162 (258)
++.+..
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 987653
No 121
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=3.8e-20 Score=127.77 Aligned_cols=86 Identities=14% Similarity=0.413 Sum_probs=74.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDK-YTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~-~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
........++|||+|||.++++++|+++|+.|| |.+++++.+. .+|.++|||||+|.+.++|++|+ .|++..++|+.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 334556779999999999999999999999999 9999999997 58999999999999999999999 89999999999
Q ss_pred EEEEecCCc
Q 025070 153 IKVNITEKP 161 (258)
Q Consensus 153 l~v~~~~~~ 161 (258)
|.|.++.+.
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999998754
No 122
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=5.4e-20 Score=133.88 Aligned_cols=89 Identities=25% Similarity=0.414 Sum_probs=82.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|||.++|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556778999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 121 V~~a~~~~~ 129 (135)
T 2lea_A 121 VQMARYGRP 129 (135)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999976543
No 123
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=4.5e-20 Score=124.87 Aligned_cols=77 Identities=27% Similarity=0.392 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKG--QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+|||+|||+.+++++|+++|++|| .|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999999999999999999999999999999999999999999999986
No 124
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=131.13 Aligned_cols=85 Identities=29% Similarity=0.503 Sum_probs=79.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
......+.++|||+|||.++++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34555678999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEec
Q 025070 154 KVNIT 158 (258)
Q Consensus 154 ~v~~~ 158 (258)
+|.++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 125
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5e-19 Score=122.82 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=79.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++ ++..++|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3455667899999999999999999999999999999999998889999999999999999999997 57789999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999976543
No 126
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-20 Score=130.38 Aligned_cols=85 Identities=22% Similarity=0.332 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|+ .||+..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3345689999999999999999999999999999999999988999999999999999999999 999999999999999
Q ss_pred ecCCcc
Q 025070 157 ITEKPL 162 (258)
Q Consensus 157 ~~~~~~ 162 (258)
++.+..
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 986543
No 127
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=121.99 Aligned_cols=80 Identities=23% Similarity=0.486 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++ |||..++|+.|+|.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999999899999999999999999999999 999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 86 a 86 (99)
T 2dgs_A 86 A 86 (99)
T ss_dssp C
T ss_pred C
Confidence 7
No 128
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.6e-19 Score=130.09 Aligned_cols=88 Identities=19% Similarity=0.304 Sum_probs=81.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++|+++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34455789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 99965543
No 129
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=3.4e-19 Score=126.20 Aligned_cols=82 Identities=37% Similarity=0.601 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 91 ~a 92 (115)
T 2dgo_A 91 WA 92 (115)
T ss_dssp ES
T ss_pred Ec
Confidence 97
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-20 Score=120.61 Aligned_cols=76 Identities=22% Similarity=0.431 Sum_probs=72.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.++ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999888 9999999999886
No 131
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=6.7e-20 Score=126.46 Aligned_cols=78 Identities=26% Similarity=0.310 Sum_probs=75.6
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCC-eee
Q 025070 181 PYKVYVGNLAK------TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG-QRI 253 (258)
Q Consensus 181 ~~~l~v~nl~~------~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g-~~l 253 (258)
.++|||+|||. .+++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..++| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEeC
Q 025070 254 RVNKA 258 (258)
Q Consensus 254 ~v~~a 258 (258)
+|.||
T Consensus 86 ~V~~a 90 (100)
T 3ns6_A 86 FLYTM 90 (100)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99987
No 132
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=124.47 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999997
No 133
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=124.30 Aligned_cols=81 Identities=38% Similarity=0.557 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 92 a 92 (105)
T 1x5u_A 92 A 92 (105)
T ss_dssp T
T ss_pred C
Confidence 7
No 134
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=127.23 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=79.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCe-eEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAV-EKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i-~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
....+.++|||+|||.++|+++|+++|+.||.| ..|+++.+. +|.++|||||+|.+.++|++|++. |+..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345667899999999999999999999999999 899999999 999999999999999999999966 99999999999
Q ss_pred EEecCCcchh
Q 025070 155 VNITEKPLVQ 164 (258)
Q Consensus 155 v~~~~~~~~~ 164 (258)
|.++.+....
T Consensus 88 v~~a~~~~~~ 97 (114)
T 2cpy_A 88 VHVVTLEDMR 97 (114)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999766543
No 135
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=122.49 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4556899999999999999999999999999999999988 889999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 93 a 93 (100)
T 2do4_A 93 S 93 (100)
T ss_dssp C
T ss_pred C
Confidence 7
No 136
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=2.5e-19 Score=127.35 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=78.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCC---eeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGA---VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~---i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
......++|||+|||+++|+++|+++|+.||. |..|+++.+. .|+++|||||+|.+.++|++|++ +|+..++|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34456789999999999999999999999999 8999999998 49999999999999999999997 9999999999
Q ss_pred EEEEecCCcc
Q 025070 153 IKVNITEKPL 162 (258)
Q Consensus 153 l~v~~~~~~~ 162 (258)
|.|.++....
T Consensus 90 i~V~~a~~~~ 99 (118)
T 2db1_A 90 IEVFKSHRTE 99 (118)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999986554
No 137
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=124.96 Aligned_cols=82 Identities=33% Similarity=0.561 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 102 ~a 103 (108)
T 2jrs_A 102 HV 103 (108)
T ss_dssp CS
T ss_pred Ec
Confidence 87
No 138
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=124.53 Aligned_cols=81 Identities=31% Similarity=0.517 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 90 a 90 (103)
T 2dnm_A 90 A 90 (103)
T ss_dssp C
T ss_pred C
Confidence 7
No 139
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=124.10 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 92 a 92 (103)
T 2cq0_A 92 A 92 (103)
T ss_dssp S
T ss_pred C
Confidence 7
No 140
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=124.01 Aligned_cols=81 Identities=35% Similarity=0.600 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45668999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 89 a 89 (102)
T 1x5s_A 89 A 89 (102)
T ss_dssp E
T ss_pred C
Confidence 6
No 141
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=126.00 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=78.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH---HHHhhCCCeeEeEEeeeCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELT---KIVQEHGAVEKAEVIYDKYTG---RSRRFAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~---~~F~~~G~i~~~~~~~~~~~~---~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
......++|||+|||+++++++|+ ++|++||.|..+.++.+..++ .++|||||+|.+.++|++|++.||+..+.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 344556899999999999999999 999999999999999887543 56699999999999999999999999999
Q ss_pred CeeEEEEecCCcc
Q 025070 150 GREIKVNITEKPL 162 (258)
Q Consensus 150 g~~l~v~~~~~~~ 162 (258)
|+.|.|.++.+..
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999997664
No 142
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.80 E-value=1.9e-19 Score=140.27 Aligned_cols=142 Identities=11% Similarity=0.136 Sum_probs=103.2
Q ss_pred ccccceecccccccCCceeeeeeCCCc--cceecccccccccccc-------------ccccccccccCCCC--------
Q 025070 15 QNLIFSKTHFTFQSRQPILQIRFPKLS--YSLHNLKTASIEDSTT-------------RLFAVAEETASSSS-------- 71 (258)
Q Consensus 15 ~~~~~s~~~~~F~~~G~i~~i~~p~~~--~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-------- 71 (258)
..+....+...|++||.|.+|+++.+. +++++|.....+..+. .+.........+..
T Consensus 15 ~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~ 94 (205)
T 3tyt_A 15 SKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGS 94 (205)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSC
T ss_pred ccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCC
Confidence 445555566799999999999999875 7888777765544443 22222111000000
Q ss_pred --------C---C--------CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCe--eEeEEeeeCCCCCcccEEEEEe
Q 025070 72 --------S---S--------VDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAV--EKAEVIYDKYTGRSRRFAFVMM 130 (258)
Q Consensus 72 --------~---~--------~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i--~~~~~~~~~~~~~~~g~afV~f 130 (258)
. . ......+.++|||+|||+++|+++|+++|++||.| .+++++.+. +..+|+|||+|
T Consensus 95 ~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f 172 (205)
T 3tyt_A 95 CSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEW 172 (205)
T ss_dssp BSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEEC
T ss_pred ccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEe
Confidence 0 0 00012356789999999999999999999999999 899998775 45679999999
Q ss_pred CCHHHHHHHHHHhCCCccCCe----eEEEEec
Q 025070 131 KTVEDANAVIEKLNGTEIGGR----EIKVNIT 158 (258)
Q Consensus 131 ~~~~~A~~ai~~l~~~~~~g~----~l~v~~~ 158 (258)
.+.++|.+|+..|||..+.|+ ++.|+++
T Consensus 173 ~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 173 DSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999999999776 5666654
No 143
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=3.1e-19 Score=126.40 Aligned_cols=81 Identities=28% Similarity=0.367 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..++.++.+++||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 102 a 102 (115)
T 2cpz_A 102 K 102 (115)
T ss_dssp C
T ss_pred c
Confidence 7
No 144
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.7e-19 Score=122.88 Aligned_cols=85 Identities=20% Similarity=0.394 Sum_probs=76.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 4455678999999999999999999999999999999955 4558999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99976543
No 145
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.1e-19 Score=121.34 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=72.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCccCCeeE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL--NGTEIGGREI 153 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l--~~~~~~g~~l 153 (258)
....+.++|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|++|++.| ++..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 44457789999999999999999999999999999988754 689999999999999999976 5678999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.....
T Consensus 84 ~V~~a~~~~~ 93 (101)
T 2cq1_A 84 YIQYSNHKEL 93 (101)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCcccC
Confidence 9999976543
No 146
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=123.04 Aligned_cols=80 Identities=31% Similarity=0.579 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSA-KVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.+.++|||+|||..+++++|+++|++||.|..+ .++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 355899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 83 a 83 (96)
T 1x5t_A 83 A 83 (96)
T ss_dssp S
T ss_pred e
Confidence 7
No 147
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-19 Score=123.45 Aligned_cols=81 Identities=27% Similarity=0.489 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeC-CCCCCCccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeEE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRV-PGTSKSSGFGFVTFSSEEDAEAAISSL-NNSLLEGQRIRV 255 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~-~~~~~~~~~~fV~f~~~~~A~~A~~~l-~g~~~~g~~l~v 255 (258)
....++|||+|||..+++++|+++|++||.|..+.++.+ ..++.++|||||+|.+.++|.+|+..| ||..++|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 455689999999999999999999999999999999998 788999999999999999999999999 999999999999
Q ss_pred EeC
Q 025070 256 NKA 258 (258)
Q Consensus 256 ~~a 258 (258)
+||
T Consensus 92 ~~a 94 (107)
T 2cph_A 92 EWA 94 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
No 148
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=127.27 Aligned_cols=85 Identities=21% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELT----KIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGR 151 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~----~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 151 (258)
.+..+.++|||+|||+++++++|+ ++|++||.|.+|.+.. +|.++|||||+|.+.++|++|++.|||..+.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 344567899999999999999876 6999999999988743 678999999999999999999999999999999
Q ss_pred eEEEEecCCcch
Q 025070 152 EIKVNITEKPLV 163 (258)
Q Consensus 152 ~l~v~~~~~~~~ 163 (258)
+|.|.++.....
T Consensus 101 ~l~V~~a~~~~~ 112 (127)
T 2a3j_A 101 PLVITFSETPQS 112 (127)
T ss_dssp CCEEEECCCCCH
T ss_pred EEEEEEccCcch
Confidence 999999987654
No 149
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=124.22 Aligned_cols=81 Identities=38% Similarity=0.524 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34668999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 89 a 89 (102)
T 2cqb_A 89 A 89 (102)
T ss_dssp C
T ss_pred C
Confidence 7
No 150
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=5.8e-19 Score=131.83 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=81.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++|+++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99976543
No 151
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=125.25 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCC-eeEeEEe-eeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCeeEE
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGA-VEKAEVI-YDKYTGRSRRFAFVMMKTVEDANAVIEKLN--GTEIGGREIK 154 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~-i~~~~~~-~~~~~~~~~g~afV~f~~~~~A~~ai~~l~--~~~~~g~~l~ 154 (258)
.+.++|||+|||.++|+++|+++|+.||. |.++.++ .+..+|.++|||||+|.+.++|++|++.|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 777788999999999999999999999996 5899999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 152
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=3.4e-19 Score=126.12 Aligned_cols=76 Identities=34% Similarity=0.573 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..+|||+|||+.+++++|+++|++||.|.++.|+.+.. .++|||||+|.+.++|.+|++.|||..++|+.|+|.||
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 46899999999999999999999999999999998863 47899999999999999999999999999999999986
No 153
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=4e-19 Score=116.79 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+..|+|+||++.+++++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.|||..++|+.|+|.+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 457899999999999999999999999999999874 6899999999999999999999999999999999987
No 154
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=120.94 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--cCCeeEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTE--IGGREIK 154 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~--~~g~~l~ 154 (258)
...++++|||+|||.++|+++|+++|++||.|.++++++ .||+|||+|.+.++|++|++.|++.. +.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 445678999999999999999999999999999999974 46899999999999999999998875 7899999
Q ss_pred EEecCCc
Q 025070 155 VNITEKP 161 (258)
Q Consensus 155 v~~~~~~ 161 (258)
|.+++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999765
No 155
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=4.8e-19 Score=124.41 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34558899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 103 a 103 (110)
T 1oo0_B 103 C 103 (110)
T ss_dssp S
T ss_pred c
Confidence 7
No 156
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=123.41 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=76.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeE-eEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK-AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~-~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.+....++|||+|||+++|+++|+++|+.||.|.. +.++.+ .+|+++|||||+|.+.++|++|++. ++..++|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456789999999999999999999999999987 888888 4999999999999999999999976 99999999999
Q ss_pred EEecCCcc
Q 025070 155 VNITEKPL 162 (258)
Q Consensus 155 v~~~~~~~ 162 (258)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99886543
No 157
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=3.9e-20 Score=125.24 Aligned_cols=81 Identities=27% Similarity=0.527 Sum_probs=74.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
++|||+|||.++++++|+++|+.||.|.++.++.+..+|.++|||||+|.+.+ |++|+..||+..++|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999988999999999999999 99999999999999999999999765
Q ss_pred ch
Q 025070 162 LV 163 (258)
Q Consensus 162 ~~ 163 (258)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 158
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=122.91 Aligned_cols=81 Identities=23% Similarity=0.455 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE-EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCee----
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL-SAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR---- 252 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~---- 252 (258)
....++|||+|||+.+++++|+++|++||.|. .+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eEEEeC
Q 025070 253 IRVNKA 258 (258)
Q Consensus 253 l~v~~a 258 (258)
|+|+||
T Consensus 86 l~v~~a 91 (99)
T 2div_A 86 FKLNYA 91 (99)
T ss_dssp CCEEET
T ss_pred EEEeec
Confidence 999997
No 159
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=6e-19 Score=118.56 Aligned_cols=79 Identities=29% Similarity=0.524 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +++..++|+.|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 456899999999999999999999999999999999999899999999999999999999997 5888999999999997
No 160
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.5e-19 Score=117.94 Aligned_cols=75 Identities=32% Similarity=0.486 Sum_probs=72.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 183 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++ |||..++|+.|+|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999999899999999999999999999998 9999999999999997
No 161
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.1e-19 Score=127.02 Aligned_cols=82 Identities=29% Similarity=0.388 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 97
No 162
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=121.10 Aligned_cols=79 Identities=32% Similarity=0.481 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||+.+++++|+++|++||.|..+.+..++. |.++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4458999999999999999999999999999999999885 889999999999999999999999999999999999987
No 163
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=4.9e-19 Score=127.72 Aligned_cols=82 Identities=29% Similarity=0.385 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
...+.++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 122 ~a 123 (129)
T 2kxn_B 122 FS 123 (129)
T ss_dssp CC
T ss_pred Ee
Confidence 87
No 164
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=127.36 Aligned_cols=85 Identities=21% Similarity=0.374 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
....++|||+|||.++|+++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|++|++. ++..++|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999976 99999999999999
Q ss_pred cCCcch
Q 025070 158 TEKPLV 163 (258)
Q Consensus 158 ~~~~~~ 163 (258)
+.+...
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 976644
No 165
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=124.11 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=76.0
Q ss_pred CCCCCCceEEEcCCCCCC------CHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 76 TPSEFARRVYIGNIPRNI------DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~------t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
......++|||+|||..+ |+++|+++|++||.|..+.+++ .+|.++|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344556899999999999 7899999999999999999983 48999999999999999999999999999999
Q ss_pred Ce-eEEEEecCCc
Q 025070 150 GR-EIKVNITEKP 161 (258)
Q Consensus 150 g~-~l~v~~~~~~ 161 (258)
|+ .|.|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998644
No 166
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.1e-19 Score=123.73 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhc------CCccCCe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN------NSLLEGQ 251 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~------g~~~~g~ 251 (258)
....++|||+|||+.+++++|+++|.+||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|| |..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eeEEEeC
Q 025070 252 RIRVNKA 258 (258)
Q Consensus 252 ~l~v~~a 258 (258)
.|+|.||
T Consensus 92 ~l~v~~a 98 (111)
T 1x4h_A 92 QLKVDLA 98 (111)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 9999987
No 167
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=122.20 Aligned_cols=80 Identities=28% Similarity=0.482 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC---CCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPG---TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~---~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
.+.++|||+|||..+++++|+++|++||.|..+.+..++. ++.++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4558999999999999999999999999999999998776 5688999999999999999999999999999999999
Q ss_pred EeC
Q 025070 256 NKA 258 (258)
Q Consensus 256 ~~a 258 (258)
+||
T Consensus 83 ~~a 85 (98)
T 2cpf_A 83 RIS 85 (98)
T ss_dssp ECS
T ss_pred EEc
Confidence 987
No 168
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=124.52 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
.....+|||+|||+++|+++|+++|+.| .|.+|.++.+. +|+++|||||+|.+.++|++|+ .+|+..++|+.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3445799999999999999999999999 89999999998 5999999999999999999999 7999999999999998
Q ss_pred cCCcc
Q 025070 158 TEKPL 162 (258)
Q Consensus 158 ~~~~~ 162 (258)
+....
T Consensus 90 a~~~~ 94 (109)
T 2dnn_A 90 ATERQ 94 (109)
T ss_dssp CCHHH
T ss_pred CCccc
Confidence 86543
No 169
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=9.1e-19 Score=121.93 Aligned_cols=80 Identities=34% Similarity=0.412 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCC---eeeE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG---QRIR 254 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 254 (258)
....++|||+|||..+++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|.+|++.|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999999988 78999999999999999999999999999988 9999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|.||
T Consensus 91 V~~a 94 (105)
T 2dnh_A 91 VKFA 94 (105)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9997
No 170
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=131.28 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKG--QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..++|||+|||+.+++++|+++|++|| .|..+.++.|+.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 7
No 171
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=124.24 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=73.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCeeE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN--GTEIGGREI 153 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~--~~~~~g~~l 153 (258)
....+.++|||+|||+++|+++|+++|++||.|.+++++++ +|||||+|.+.++|++|++.++ +..+.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34456789999999999999999999999999999999875 6899999999999999999887 468999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.+...
T Consensus 100 ~V~~a~~k~~ 109 (119)
T 2ad9_A 100 YIQFSNHKEL 109 (119)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCCCC
Confidence 9999976644
No 172
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=119.79 Aligned_cols=79 Identities=25% Similarity=0.478 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCC-CccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK-SSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~-~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..++|||+|||..+++++|+++|++||.|..+.+..+..++. ++|+|||+|.+.++|.+|+..|||..++|+.|+|++|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999998886655 8999999999999999999999999999999999986
No 173
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=8.5e-19 Score=122.52 Aligned_cols=80 Identities=26% Similarity=0.326 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4556899999999999999999999999999999999988 899999999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 105 a 105 (107)
T 3ulh_A 105 V 105 (107)
T ss_dssp E
T ss_pred e
Confidence 6
No 174
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=7.9e-19 Score=118.44 Aligned_cols=76 Identities=29% Similarity=0.503 Sum_probs=74.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|+ .|||..++|+.|+|++|
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 78999999999999999999999999999999999889999999999999999999999 89999999999999987
No 175
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=123.31 Aligned_cols=84 Identities=26% Similarity=0.472 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc--------
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI-------- 148 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~-------- 148 (258)
.....++|||+|||.++++++|+++|+.||.|..++++.+. +|.++|||||+|.+.++|++|++.||+..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34566899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCeeEEEEecCCc
Q 025070 149 GGREIKVNITEKP 161 (258)
Q Consensus 149 ~g~~l~v~~~~~~ 161 (258)
.+++|.|.++.+.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998743
No 176
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=2.2e-19 Score=130.19 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=78.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCC---eeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGA---VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~---i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
.+....++|||+|||+++|+++|+++|+.||. |.+|+++.+.. |+++|||||+|.+.++|++|++ +|+..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999999 89999999985 9999999999999999999997 9999999999
Q ss_pred EEEEecCCcc
Q 025070 153 IKVNITEKPL 162 (258)
Q Consensus 153 l~v~~~~~~~ 162 (258)
|.|.++.+..
T Consensus 117 i~V~~a~~~e 126 (136)
T 2hgl_A 117 IEVFKSHRTE 126 (136)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECChHH
Confidence 9999986543
No 177
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=5.8e-19 Score=126.70 Aligned_cols=83 Identities=22% Similarity=0.453 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
...++|||+|||.++|+++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|++|+ .||+..++|+.|.|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999 89999999999999998
Q ss_pred CCcc
Q 025070 159 EKPL 162 (258)
Q Consensus 159 ~~~~ 162 (258)
.+..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 178
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-19 Score=124.23 Aligned_cols=79 Identities=35% Similarity=0.642 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 455899999999999999999999999999999999988 8999999999999999999999999999999999999997
No 179
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=122.32 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..++|||+|||+.+++++|+++|++||.|.++.+++++. |.++|||||+|.+.++|.+|+. ++|..++|+.|.|.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 347899999999999999999999999999999999887 9999999999999999999999 8999999999999874
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.79 E-value=3.9e-19 Score=141.17 Aligned_cols=141 Identities=13% Similarity=0.233 Sum_probs=105.8
Q ss_pred cccceecccccccCCceeeeeeCCCc--cceeccccccccccccc-cccccccccC-------CC-----C---------
Q 025070 16 NLIFSKTHFTFQSRQPILQIRFPKLS--YSLHNLKTASIEDSTTR-LFAVAEETAS-------SS-----S--------- 71 (258)
Q Consensus 16 ~~~~s~~~~~F~~~G~i~~i~~p~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~-----~--------- 71 (258)
+.........|++||+|.+|+++.+. ++++.|.....+..+.. +......... .. .
T Consensus 46 ~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~ 125 (229)
T 2adc_A 46 RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT 125 (229)
T ss_dssp TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTE
T ss_pred cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccc
Confidence 33444455589999999999999886 78888887765555443 2211111110 00 0
Q ss_pred ----------------CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHH
Q 025070 72 ----------------SSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVE 134 (258)
Q Consensus 72 ----------------~~~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~ 134 (258)
........+.++|||+|||.++++++|+++|+.|| .|..++++.+ .+|+|||+|.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~ 200 (229)
T 2adc_A 126 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVE 200 (229)
T ss_dssp EECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHH
T ss_pred cccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHH
Confidence 00001123468999999999999999999999999 9999999653 3689999999999
Q ss_pred HHHHHHHHhCCCccC-CeeEEEEecCCc
Q 025070 135 DANAVIEKLNGTEIG-GREIKVNITEKP 161 (258)
Q Consensus 135 ~A~~ai~~l~~~~~~-g~~l~v~~~~~~ 161 (258)
+|++|++.|||..+. |+.|.|.++.++
T Consensus 201 ~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 201 EAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999 999999998754
No 181
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=139.08 Aligned_cols=141 Identities=13% Similarity=0.236 Sum_probs=106.5
Q ss_pred cccceecccccccCCceeeeeeCCCc--cceeccccccccccccc-cccccccccCC-----------------------
Q 025070 16 NLIFSKTHFTFQSRQPILQIRFPKLS--YSLHNLKTASIEDSTTR-LFAVAEETASS----------------------- 69 (258)
Q Consensus 16 ~~~~s~~~~~F~~~G~i~~i~~p~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------------------- 69 (258)
+.........|++||+|.+|+++.+. ++++.|.....+..+.. +..........
T Consensus 15 ~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~ 94 (198)
T 1qm9_A 15 RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT 94 (198)
T ss_dssp SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCE
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCcccccc
Confidence 45555566799999999999999886 78888877655544443 11111111000
Q ss_pred --------------CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHH
Q 025070 70 --------------SSSSVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVE 134 (258)
Q Consensus 70 --------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~ 134 (258)
..........+.++|||+|||.++++++|+++|+.|| .|..++++.+ .+|+|||+|.+.+
T Consensus 95 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~ 169 (198)
T 1qm9_A 95 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVE 169 (198)
T ss_dssp EESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHH
T ss_pred ccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHH
Confidence 0000011124578999999999999999999999999 9999999664 2689999999999
Q ss_pred HHHHHHHHhCCCccC-CeeEEEEecCCc
Q 025070 135 DANAVIEKLNGTEIG-GREIKVNITEKP 161 (258)
Q Consensus 135 ~A~~ai~~l~~~~~~-g~~l~v~~~~~~ 161 (258)
+|.+|++.|||..++ |+.|.|.++.++
T Consensus 170 ~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 170 EAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999 999999998754
No 182
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.9e-19 Score=121.11 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=75.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++|+++|+++|+.||.| +++.+. ++.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS-SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC-CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 355677999999999999999999999999987 566664 8999999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99977643
No 183
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-19 Score=122.91 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.+...++|||+|||+++|+++|+++|+.||.+ .++++.+. +|+++|||||+|.+.++|++|+ .+|+..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 44566899999999999999999999999955 99999998 8999999999999999999999 579999999999999
Q ss_pred ecCCcc
Q 025070 157 ITEKPL 162 (258)
Q Consensus 157 ~~~~~~ 162 (258)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 886553
No 184
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=5.8e-19 Score=123.14 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc---CCeeeE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL---EGQRIR 254 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 254 (258)
....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+ +|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 44568999999999999999999999999999999999998999999999999999999999999999987 899999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|.||
T Consensus 90 v~~a 93 (106)
T 2dgp_A 90 VKPA 93 (106)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9997
No 185
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.8e-19 Score=121.34 Aligned_cols=79 Identities=37% Similarity=0.542 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|.+++||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346689999999999999999999999999999999987 788999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 90 a 90 (103)
T 2d9p_A 90 A 90 (103)
T ss_dssp C
T ss_pred e
Confidence 7
No 186
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-19 Score=122.14 Aligned_cols=80 Identities=25% Similarity=0.321 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--ccCCeeE
Q 025070 77 PSEFARRVYIGNIPR-NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT--EIGGREI 153 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~-~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~--~~~g~~l 153 (258)
...+.++|||+|||. ++|+++|+++|++||.|.+++++++ +|||||+|.+.++|++|++.|++. .+.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 344678999999999 9999999999999999999999865 479999999999999999988864 5899999
Q ss_pred EEEecCCcc
Q 025070 154 KVNITEKPL 162 (258)
Q Consensus 154 ~v~~~~~~~ 162 (258)
.|.++....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999997543
No 187
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-19 Score=129.05 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=78.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......++|||+|||+++|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++|++ +|+..++|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 344566899999999999999999999999999997777777799999999999999999999997 9999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.....
T Consensus 99 ~~a~~~~~ 106 (124)
T 1wel_A 99 HPITKKGM 106 (124)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99976543
No 188
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=117.48 Aligned_cols=79 Identities=23% Similarity=0.455 Sum_probs=73.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
...+.++|||+|||.++++++|+++|+.||.|..+.++ +|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 44567899999999999999999999999999999997 5799999999999999999999999999999999
Q ss_pred ecCCcch
Q 025070 157 ITEKPLV 163 (258)
Q Consensus 157 ~~~~~~~ 163 (258)
++.+...
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9976644
No 189
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=120.87 Aligned_cols=82 Identities=12% Similarity=0.196 Sum_probs=72.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccCCeeE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG--TEIGGREI 153 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~--~~~~g~~l 153 (258)
....+.++|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|++|++.|++ ..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34456789999999999999999999999999999998753 68999999999999999998865 45899999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
.|.++.....
T Consensus 84 ~V~~a~~~~~ 93 (104)
T 1wex_A 84 FFNYSTSKRI 93 (104)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCccc
Confidence 9999976543
No 190
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-19 Score=120.67 Aligned_cols=80 Identities=26% Similarity=0.394 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+.++|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+++|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45589999999999999999999999999999999999889999999999999999999999999999999999998875
No 191
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=118.24 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCc--cCCeee
Q 025070 176 NFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL--LEGQRI 253 (258)
Q Consensus 176 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~--~~g~~l 253 (258)
...+++++|||+|||+.+++++|+++|++||.|.++.+++ .+|+|||+|++.++|.+|++.|+|.. ++|+.|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3445678999999999999999999999999999999984 56999999999999999999999986 789999
Q ss_pred EEEeC
Q 025070 254 RVNKA 258 (258)
Q Consensus 254 ~v~~a 258 (258)
.|+||
T Consensus 90 ~V~~S 94 (100)
T 3r27_A 90 FVNYS 94 (100)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99997
No 192
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=5.8e-19 Score=123.44 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
.+....+|||+|||+++++++|+++|+.|| .|..+.+.. +.++|||||+|.+.++|++|++.|||..+.|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 444568999999999999999999999999 899998853 347899999999999999999999999999999999
Q ss_pred EecCCc
Q 025070 156 NITEKP 161 (258)
Q Consensus 156 ~~~~~~ 161 (258)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998654
No 193
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=118.34 Aligned_cols=82 Identities=24% Similarity=0.481 Sum_probs=73.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......++|||+|||.++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|++|++.||+..++|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4455678999999999999999999999999997 777654 57899999999999999999999999999999999
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
.++.+..
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9997653
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.78 E-value=2.7e-19 Score=144.82 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=110.9
Q ss_pred cceecccccccCCceeeeeeCCCc-cceeccccccccccccc-cccccccccCCCCCCCCCCCCCCceEEEcCCCCCCCH
Q 025070 18 IFSKTHFTFQSRQPILQIRFPKLS-YSLHNLKTASIEDSTTR-LFAVAEETASSSSSSVDTPSEFARRVYIGNIPRNIDN 95 (258)
Q Consensus 18 ~~s~~~~~F~~~G~i~~i~~p~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 95 (258)
........|++||+|.+|++.++. ++++.|.....+..+.. +......... ... ....+.++|||+|||..+|+
T Consensus 35 te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~-l~v---~~a~~~~~l~v~nl~~~~t~ 110 (261)
T 3sde_A 35 TEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP-LRI---RFATHGAALTVKNLSPVVSN 110 (261)
T ss_dssp CHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE-CEE---EECCCSSEEEEESCCTTCCH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCce-eEe---eecccCCcccccCCCCCCCH
Confidence 333344589999999999998776 89999999887777665 3333322211 111 11234579999999999999
Q ss_pred HHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccC---CeeEEEEecCCcc
Q 025070 96 DELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG-TEIG---GREIKVNITEKPL 162 (258)
Q Consensus 96 ~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~-~~~~---g~~l~v~~~~~~~ 162 (258)
++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|.+|+..||+ ..+. +++|.|.++....
T Consensus 111 ~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 111 ELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999999999999996 899999999999999999999999954 4444 9999999987653
No 195
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-19 Score=125.70 Aligned_cols=84 Identities=29% Similarity=0.389 Sum_probs=76.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|||+|||.++|+++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|++|++ ||+..+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999988 666776689999999999999999999997 99999999999999
Q ss_pred ecCCcc
Q 025070 157 ITEKPL 162 (258)
Q Consensus 157 ~~~~~~ 162 (258)
++.+..
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 997654
No 196
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=125.27 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=78.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCC---eeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGA---VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~---i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
.+....++|||+|||+++|+++|+++|+.||. |..++++.+.. |.++|||||+|.+.++|++|++ +|+..++|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 45567789999999999999999999999998 89999999985 9999999999999999999997 9999999999
Q ss_pred EEEEecCCcc
Q 025070 153 IKVNITEKPL 162 (258)
Q Consensus 153 l~v~~~~~~~ 162 (258)
|.|.++.+..
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987554
No 197
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=120.82 Aligned_cols=79 Identities=28% Similarity=0.523 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++|| |..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 999999999999999999999999999999999 8999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 90 a 90 (103)
T 2dng_A 90 A 90 (103)
T ss_dssp C
T ss_pred e
Confidence 7
No 198
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=2.2e-19 Score=117.19 Aligned_cols=75 Identities=19% Similarity=0.445 Sum_probs=71.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
+|||+|||.++++++|+++|++||+|.++.++.+..+|.++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999996 5899999999999864
No 199
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=1.3e-18 Score=125.20 Aligned_cols=82 Identities=23% Similarity=0.315 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 98 ~a 99 (126)
T 3ex7_B 98 WC 99 (126)
T ss_dssp ES
T ss_pred Ee
Confidence 97
No 200
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=1.1e-18 Score=131.42 Aligned_cols=87 Identities=26% Similarity=0.316 Sum_probs=79.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
...+.++|||+|||.++++++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCcch
Q 025070 157 ITEKPLV 163 (258)
Q Consensus 157 ~~~~~~~ 163 (258)
++.+...
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9866543
No 201
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=123.35 Aligned_cols=82 Identities=23% Similarity=0.301 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL--------SAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~ 248 (258)
.....++|||+|||..+++++|+++|++||.|. .+.++.++.+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345668999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCeeeEEEeC
Q 025070 249 EGQRIRVNKA 258 (258)
Q Consensus 249 ~g~~l~v~~a 258 (258)
+|+.|+|.||
T Consensus 91 ~g~~l~V~~a 100 (113)
T 2cpe_A 91 QGSKLKVSLA 100 (113)
T ss_dssp TTEECEEECS
T ss_pred CCCEEEEEEC
Confidence 9999999987
No 202
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=115.33 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=71.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCeeEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL-NGTEIGGREIK 154 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l-~~~~~~g~~l~ 154 (258)
......++|||+|||.++++++|+++|++||.|..++++++ +|||||+|.+.++|++|++.| ++..+.|++|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34566789999999999999999999999999999999863 689999999999999999988 99999999999
Q ss_pred EEecC
Q 025070 155 VNITE 159 (258)
Q Consensus 155 v~~~~ 159 (258)
|.+++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99873
No 203
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-19 Score=116.95 Aligned_cols=76 Identities=32% Similarity=0.520 Sum_probs=73.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..++ ..++|+.|+|+||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999997
No 204
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.3e-19 Score=125.66 Aligned_cols=88 Identities=18% Similarity=0.327 Sum_probs=76.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++|+++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999965544444337889999999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99976643
No 205
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=4.5e-20 Score=159.09 Aligned_cols=80 Identities=19% Similarity=0.392 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+.++|||+|||..+++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999997
No 206
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=119.67 Aligned_cols=82 Identities=20% Similarity=0.424 Sum_probs=74.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|||.++|+++|+++|+.||.|..+++.++ +|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 345567789999999999999999999999999999999743 68999999999999999999999999999999
Q ss_pred EEecCCcc
Q 025070 155 VNITEKPL 162 (258)
Q Consensus 155 v~~~~~~~ 162 (258)
|.++.+..
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99997653
No 207
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=118.61 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLK----KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
...++|||+|||+.+++++|+ ++|++||.|.++.++.++.+ ++||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345789999999999999999 99999999999999988754 78999999999999999999999999999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|+||
T Consensus 84 V~~a 87 (96)
T 2dgx_A 84 VSLA 87 (96)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9997
No 208
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=122.34 Aligned_cols=77 Identities=36% Similarity=0.591 Sum_probs=75.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.||
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 78999999999999999999999999999999999889999999999999999999999999999999999999997
No 209
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=122.70 Aligned_cols=80 Identities=34% Similarity=0.489 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||.|||..+++++|+++|++||.|..+.++.++.++.+++||||+|.+.++|.+|+..+++ .++|+.|+|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44568999999999999999999999999999999999998999999999999999999999999999 89999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 93 a 93 (116)
T 2cqd_A 93 A 93 (116)
T ss_dssp S
T ss_pred c
Confidence 7
No 210
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.78 E-value=1.9e-19 Score=136.91 Aligned_cols=134 Identities=17% Similarity=0.235 Sum_probs=104.1
Q ss_pred cccccccCCceeeeeeCCC-------ccceeccccccccccccccccccccccC----CCCCCCCCCCCCCceEEEcCCC
Q 025070 22 THFTFQSRQPILQIRFPKL-------SYSLHNLKTASIEDSTTRLFAVAEETAS----SSSSSVDTPSEFARRVYIGNIP 90 (258)
Q Consensus 22 ~~~~F~~~G~i~~i~~p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~V~nl~ 90 (258)
....|+++|.+..+. +.+ .++++.|.....+..+..+......... .............++|||+|||
T Consensus 30 l~~~f~~~g~~~~~~-~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp 108 (175)
T 1fje_B 30 LKVAISELFAKNDLA-VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLS 108 (175)
T ss_dssp HHHHHHHHHHHHTCC-CCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCC
T ss_pred HHHHHHHhCCcceEE-EEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCC
Confidence 344788898876622 222 2899999998887777765444333222 1122233445577899999999
Q ss_pred CCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCc
Q 025070 91 RNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 161 (258)
Q Consensus 91 ~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~ 161 (258)
.++|+++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.++
T Consensus 109 ~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 109 FNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999988766 348899999999999999999999999999999999999999754
No 211
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=3.5e-19 Score=121.72 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+..++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999998999998889999999999999999999999999999999999999986
No 212
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=117.58 Aligned_cols=80 Identities=18% Similarity=0.417 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC--CeeEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG--GREIK 154 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~--g~~l~ 154 (258)
...+.++|||+|||.++++++|+++|+.||.|.++.+..+ +|||||+|.+.++|++|++.||+..+. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456689999999999999999999999999999998753 689999999999999999999999999 99999
Q ss_pred EEecCCcc
Q 025070 155 VNITEKPL 162 (258)
Q Consensus 155 v~~~~~~~ 162 (258)
|.++.+..
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99997653
No 213
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=120.76 Aligned_cols=79 Identities=28% Similarity=0.491 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCc-cCCeeeEEE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSE-KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL-LEGQRIRVN 256 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~-~~g~~l~v~ 256 (258)
...++|||+|||..+++++|+++|++ ||.|..+.++.+. +|.++|||||+|.+.++|.+|+..|||.. ++|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45589999999999999999999999 9999999999998 89999999999999999999999999999 999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 86 ~a 87 (104)
T 2dhg_A 86 VA 87 (104)
T ss_dssp BC
T ss_pred Ec
Confidence 86
No 214
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-19 Score=122.07 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34558899999999999999999999999999888888888999999999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 92 a 92 (98)
T 2cqp_A 92 G 92 (98)
T ss_dssp S
T ss_pred c
Confidence 6
No 215
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=118.27 Aligned_cols=73 Identities=14% Similarity=0.286 Sum_probs=67.6
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe-eE
Q 025070 81 ARRVYIGNIPRNI------DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGR-EI 153 (258)
Q Consensus 81 ~~~l~V~nl~~~~------t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~-~l 153 (258)
+++|||+|||..+ ++++|+++|++||.|.++.+++ .+|.++|||||+|.+.++|++|++.|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 7799999999999999999883 3789999999999999999999999999999999 88
Q ss_pred EE
Q 025070 154 KV 155 (258)
Q Consensus 154 ~v 155 (258)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 216
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=118.08 Aligned_cols=80 Identities=31% Similarity=0.544 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|++||.|..+.+..+.. .+++||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345568999999999999999999999999999999998764 378999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 89 ~a 90 (103)
T 2cq3_A 89 NA 90 (103)
T ss_dssp EC
T ss_pred Ec
Confidence 97
No 217
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=120.52 Aligned_cols=78 Identities=33% Similarity=0.603 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCC-CCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGT-SKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~-~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
.+.++|||+|||..+++++|+++|+.|| |..+.++.++.+ |.++|||||+|.+.++|.+|+ .|||..++|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4558999999999999999999999999 999999999887 899999999999999999999 8999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 91 a 91 (104)
T 1wi8_A 91 A 91 (104)
T ss_dssp C
T ss_pred c
Confidence 7
No 218
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=127.10 Aligned_cols=82 Identities=38% Similarity=0.506 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 97
No 219
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=119.90 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEEE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN--SLLEGQRIRVN 256 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~ 256 (258)
.+.++|||+|||+.+++++|+++|++||.|.++.++++ +|||||+|++.++|.+|+..|++ ..++|+.|+|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45589999999999999999999999999999999963 69999999999999999998864 78999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 88 ~A 89 (105)
T 1sjq_A 88 FS 89 (105)
T ss_dssp CC
T ss_pred Ec
Confidence 87
No 220
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=2e-18 Score=120.67 Aligned_cols=81 Identities=21% Similarity=0.442 Sum_probs=72.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.......++|||+|||.++|+++|+++|+.||.|..+.++ +|||||+|.+.++|++|++.|||..++|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455677999999999999999999999999999999997 68999999999999999999999999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999976543
No 221
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=119.06 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=77.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|||.++++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556779999999999999999999999773 678888887899999999999999999999999999999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999976643
No 222
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=118.76 Aligned_cols=79 Identities=32% Similarity=0.524 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..+..+ ++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 455689999999999999999999999999999999988643 689999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 90 a 90 (103)
T 2cqi_A 90 A 90 (103)
T ss_dssp C
T ss_pred C
Confidence 7
No 223
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.77 E-value=1.7e-18 Score=141.71 Aligned_cols=76 Identities=16% Similarity=0.323 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-CeeEEEEe
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG-GREIKVNI 157 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~-g~~l~v~~ 157 (258)
.+.++|||+|||.++++++|+++|+.||.|.+++++.+. +|||||+|.+.++|.+|++.|||..+. |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456889999999999999999999999999999998654 589999999999999999999999999 99999999
Q ss_pred cC
Q 025070 158 TE 159 (258)
Q Consensus 158 ~~ 159 (258)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 224
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=3.3e-18 Score=117.22 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=71.1
Q ss_pred CCCCCCCCceEEEcCCCC-CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 74 VDTPSEFARRVYIGNIPR-NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~-~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
......+.++|||+|||. ++++++|+++|+.||.|..+++. +|||||+|.+.++|++|++.|||..++|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344556789999999998 99999999999999999999982 689999999999999999999999999999
Q ss_pred EEEEecCCc
Q 025070 153 IKVNITEKP 161 (258)
Q Consensus 153 l~v~~~~~~ 161 (258)
|.|.++...
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998654
No 225
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2.5e-18 Score=116.70 Aligned_cols=78 Identities=37% Similarity=0.462 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|..+.+.++ +|.++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999984 6789999999999999999999999999999999999987
No 226
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=126.47 Aligned_cols=82 Identities=30% Similarity=0.412 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 118 ~a 119 (139)
T 1u6f_A 118 LA 119 (139)
T ss_dssp ES
T ss_pred EC
Confidence 87
No 227
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5e-18 Score=119.94 Aligned_cols=80 Identities=35% Similarity=0.398 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|.+||.|..+.+..++ +|.+++||||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999999987 588999999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 91 a 91 (114)
T 2do0_A 91 D 91 (114)
T ss_dssp C
T ss_pred c
Confidence 6
No 228
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=7.9e-19 Score=120.43 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 025070 77 PSEFARRVYIGNIPRNIDNDELT----KIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE 152 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~----~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~ 152 (258)
+..+.++|||+|||.++++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999999873 5778899999999999999999999999999999
Q ss_pred EEEEecCCcch
Q 025070 153 IKVNITEKPLV 163 (258)
Q Consensus 153 l~v~~~~~~~~ 163 (258)
|.|.++.+...
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987654
No 229
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.3e-18 Score=118.98 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
....++|||+|||.++++++|+++|+.||.|.++++. .++|||||+|.+.++|++|++.||+..++|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999997 3579999999999999999999999999999999999
Q ss_pred cCC
Q 025070 158 TEK 160 (258)
Q Consensus 158 ~~~ 160 (258)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 230
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=118.34 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-----ee
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG-----RE 152 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g-----~~ 152 (258)
....++|||+|||.++|+++|+++|+.||.|..+.++.+ |||||+|.+.++|++|++.||+..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred EEEEecCCcch
Q 025070 153 IKVNITEKPLV 163 (258)
Q Consensus 153 l~v~~~~~~~~ 163 (258)
|.|.++.+...
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987543
No 231
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.3e-18 Score=129.11 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=75.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.......++|||+|||+++|+++|+++|+.||.|.+++++.+ ++|||||+|.+.++|++|++.||+..+.|++|.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344567799999999999999999999999999999999876 579999999999999999999999999999999
Q ss_pred EEecCCc
Q 025070 155 VNITEKP 161 (258)
Q Consensus 155 v~~~~~~ 161 (258)
|.++.+.
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998764
No 232
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=4.2e-18 Score=127.15 Aligned_cols=81 Identities=28% Similarity=0.402 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||.|||..+++++|+++|++||.|..+.++.++.++.+++||||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 116 a 116 (156)
T 1h2v_Z 116 D 116 (156)
T ss_dssp E
T ss_pred C
Confidence 6
No 233
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=119.82 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
....++|||+|||.++++++|+++|+.||.|..++++.+ +|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred cCCcch
Q 025070 158 TEKPLV 163 (258)
Q Consensus 158 ~~~~~~ 163 (258)
+.+...
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 976643
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=3e-18 Score=120.02 Aligned_cols=80 Identities=31% Similarity=0.485 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..+ |..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 445689999999999999999999999999999999999989999999999999999999999976 5899999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 101 a 101 (109)
T 2rs2_A 101 A 101 (109)
T ss_dssp C
T ss_pred c
Confidence 7
No 235
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=122.45 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=74.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|.||
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 379999999999999999999999999999999999988999999999999999999999 89999999999999986
No 236
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=2.8e-18 Score=147.91 Aligned_cols=85 Identities=16% Similarity=0.450 Sum_probs=80.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
..+.++|||+|||..+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 025070 158 TEKPL 162 (258)
Q Consensus 158 ~~~~~ 162 (258)
+.+..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97643
No 237
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=119.52 Aligned_cols=80 Identities=25% Similarity=0.400 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCccCCeeE
Q 025070 77 PSEFARRVYIGNIPRN-IDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN--GTEIGGREI 153 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~-~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~--~~~~~g~~l 153 (258)
...+.++|||+|||.+ +++++|+++|++||.|.++++++ ++|||||+|.+.++|++|++.|+ +..+.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556899999999998 99999999999999999999963 46899999999999999999885 456999999
Q ss_pred EEEecCCcc
Q 025070 154 KVNITEKPL 162 (258)
Q Consensus 154 ~v~~~~~~~ 162 (258)
.|.++....
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999997554
No 238
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-19 Score=128.57 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC----ccCCe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLS--AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS----LLEGQ 251 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~----~~~g~ 251 (258)
....++|||+|||+.+++++|+++|++||.|.. +.+++++.+|.++|||||+|.+. +|.+|+..|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 355689999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred eeEEEeC
Q 025070 252 RIRVNKA 258 (258)
Q Consensus 252 ~l~v~~a 258 (258)
.|+|.||
T Consensus 99 ~l~V~~a 105 (131)
T 2m2b_A 99 TINVEFA 105 (131)
T ss_dssp CCCCEEC
T ss_pred EEEEEEC
Confidence 9999987
No 239
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=9.1e-19 Score=120.79 Aligned_cols=79 Identities=33% Similarity=0.587 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVP-GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~-~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
....++|||+|||..+++++|+++|+.|| |..+.+..+. .+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34558999999999999999999999999 9999999988 68999999999999999999999 899999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 94 ~a 95 (100)
T 2j76_E 94 VA 95 (100)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 240
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=121.44 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEeeCCCCC---CCccEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLK---KCFSEKGQVLSAKVLRVPGTS---KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ 251 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~i~~~~~~~---~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~ 251 (258)
....++|||+|||+.+++++|+ ++|++||.|..+.+..+..++ .++|||||+|.+.++|.+|++.|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3445899999999999999999 999999999999999887644 4569999999999999999999999999999
Q ss_pred eeEEEeC
Q 025070 252 RIRVNKA 258 (258)
Q Consensus 252 ~l~v~~a 258 (258)
.|+|+||
T Consensus 92 ~l~V~~a 98 (111)
T 2cpi_A 92 TLKASLG 98 (111)
T ss_dssp EEEEESC
T ss_pred EEEEEec
Confidence 9999997
No 241
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=123.76 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCe----eEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAV----EKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
....+|||+|||+++|+++|+++|+.||.| ..|.++.+. +|+++|||||+|.+.++|++|++. |+..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345899999999999999999999999975 699999996 899999999999999999999975 99999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|..+.+...
T Consensus 99 V~~a~~~e~ 107 (123)
T 2dha_A 99 LFRSTAAEV 107 (123)
T ss_dssp CEEECHHHH
T ss_pred EEECCHHHH
Confidence 998865543
No 242
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=3.2e-19 Score=120.68 Aligned_cols=76 Identities=41% Similarity=0.636 Sum_probs=73.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.+ |.+|+..|||..++|+.|+|+||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 57999999999999999999999999999999999989999999999999999 99999999999999999999997
No 243
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.5e-18 Score=116.54 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=69.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhc--CCccCCeee
Q 025070 176 NFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN--NSLLEGQRI 253 (258)
Q Consensus 176 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~--g~~~~g~~l 253 (258)
....+.++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|++.++|.+|++.|+ +..++|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 33456689999999999999999999999999999988853 7999999999999999999875 678999999
Q ss_pred EEEeC
Q 025070 254 RVNKA 258 (258)
Q Consensus 254 ~v~~a 258 (258)
+|+||
T Consensus 84 ~V~~a 88 (101)
T 2cq1_A 84 YIQYS 88 (101)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99997
No 244
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.2e-18 Score=119.99 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEe-eCCCCCCCccEEEEEeCCHHHHHHHHHHhc--CCccCCeeeE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQ-VLSAKVL-RVPGTSKSSGFGFVTFSSEEDAEAAISSLN--NSLLEGQRIR 254 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~i~-~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~--g~~~~g~~l~ 254 (258)
...++|||+|||..+++++|+++|.+||. |..+.++ .+..+|.++|||||+|.+.++|.+|+..|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34589999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|.||
T Consensus 86 V~~a 89 (109)
T 2dis_A 86 VDWA 89 (109)
T ss_dssp EEES
T ss_pred EEEc
Confidence 9997
No 245
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=4.2e-18 Score=122.21 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4556899999999999999999999999999999999988 899999999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 111 a 111 (124)
T 2kt5_A 111 V 111 (124)
T ss_dssp E
T ss_pred e
Confidence 6
No 246
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=6.6e-18 Score=117.13 Aligned_cols=79 Identities=18% Similarity=0.444 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
...+.++|||+|||.++|+++|+++|+.||.|..+.++ +|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 44567899999999999999999999999999999986 4599999999999999999999999999999999
Q ss_pred ecCCcch
Q 025070 157 ITEKPLV 163 (258)
Q Consensus 157 ~~~~~~~ 163 (258)
++.+...
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9977654
No 247
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=120.40 Aligned_cols=80 Identities=30% Similarity=0.510 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+.. +|..++|+.|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45568999999999999999999999999999999999998999999999999999999999998 99999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 92 a 92 (105)
T 2dh8_A 92 C 92 (105)
T ss_dssp S
T ss_pred c
Confidence 6
No 248
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.1e-18 Score=114.47 Aligned_cols=80 Identities=29% Similarity=0.514 Sum_probs=72.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
......++|||+|||.++++++|+++|+.||.|..+.++ ++||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345667899999999999999999999999999999996 349999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99976643
No 249
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.5e-18 Score=137.30 Aligned_cols=84 Identities=21% Similarity=0.367 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCC--CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHG--AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
..++|||+|||.++|+++|+++|+.|| .|.+|+|+.|..+|+++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred cCCcch
Q 025070 158 TEKPLV 163 (258)
Q Consensus 158 ~~~~~~ 163 (258)
+.+...
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 976543
No 250
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=114.44 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=73.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhhC--CCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 025070 74 VDTPSEFARRVYIGNIPRNIDNDELTKIVQEH--GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGR 151 (258)
Q Consensus 74 ~~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~--G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 151 (258)
......+.++|||+|||.++|+++|+++|+.| |.|..+.+. +|||||+|.+.++|++|++.||+..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34455677899999999999999999999999 899988773 57999999999999999999999999999
Q ss_pred eEEEEecCCcc
Q 025070 152 EIKVNITEKPL 162 (258)
Q Consensus 152 ~l~v~~~~~~~ 162 (258)
.|.|.++.+..
T Consensus 80 ~l~v~~a~~~~ 90 (99)
T 2cpd_A 80 PIEVTLAKPVD 90 (99)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 251
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=6.2e-18 Score=121.18 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLK----KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 253 (258)
..+.++|||+|||+.+++++|+ ++|++||.|.++.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999876 6999999999988764 56889999999999999999999999999999999
Q ss_pred EEEeC
Q 025070 254 RVNKA 258 (258)
Q Consensus 254 ~v~~a 258 (258)
+|.||
T Consensus 103 ~V~~a 107 (127)
T 2a3j_A 103 VITFS 107 (127)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99997
No 252
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=119.33 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCe-
Q 025070 179 DSPYKVYVGNLAKTV------TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ- 251 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~- 251 (258)
...++|||+|||..+ ++++|+++|++||.|..+.+. +.+|.++|||||+|.+.++|.+|+..|||..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345899999999999 789999999999999999988 46789999999999999999999999999999998
Q ss_pred eeEEEeC
Q 025070 252 RIRVNKA 258 (258)
Q Consensus 252 ~l~v~~a 258 (258)
.|+|.||
T Consensus 91 ~l~V~~a 97 (105)
T 2nlw_A 91 TFRVNLF 97 (105)
T ss_dssp EEEEECS
T ss_pred eEEEEEc
Confidence 9999987
No 253
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=117.32 Aligned_cols=78 Identities=24% Similarity=0.428 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||.|||..+++++|+++|++||.|..+.+..+ +.+++||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999764 46789999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 96 a 96 (109)
T 1x4a_A 96 P 96 (109)
T ss_dssp C
T ss_pred c
Confidence 7
No 254
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=118.20 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC--ccCCeeeE
Q 025070 178 VDSPYKVYVGNLAK-TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS--LLEGQRIR 254 (258)
Q Consensus 178 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 254 (258)
..+.++|||+|||+ .+++++|+++|++||.|.++.++++ +++|||+|++.++|.+|++.||+. .++|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34668999999999 9999999999999999999999863 489999999999999999999875 49999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|+||
T Consensus 86 V~~a 89 (102)
T 1x4d_A 86 VHLS 89 (102)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9986
No 255
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=114.41 Aligned_cols=79 Identities=30% Similarity=0.575 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
...+.++|||+|||.++|+++|+++|+.||.|..++++ ++||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45567899999999999999999999999999999996 3499999999999999999999999999999999
Q ss_pred ecCCcch
Q 025070 157 ITEKPLV 163 (258)
Q Consensus 157 ~~~~~~~ 163 (258)
++.+...
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9976643
No 256
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.3e-18 Score=116.34 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC--ccCCeeeE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS--LLEGQRIR 254 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~--~~~g~~l~ 254 (258)
...+.++|||+|||+.+++++|+++|++||.|..+.+++ .+|||||+|++.++|.+|++.|++. .++|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345668999999999999999999999999999999885 3799999999999999999998765 49999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|+||
T Consensus 85 V~~a 88 (104)
T 1wex_A 85 FNYS 88 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9997
No 257
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=7.1e-18 Score=128.21 Aligned_cols=86 Identities=22% Similarity=0.420 Sum_probs=80.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|||+|||.++++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCcch
Q 025070 157 ITEKPLV 163 (258)
Q Consensus 157 ~~~~~~~ 163 (258)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9976543
No 258
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=4.5e-18 Score=122.02 Aligned_cols=76 Identities=24% Similarity=0.466 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|+||
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 78999999999999999999999999999999999889999999999999999999999 79999999999999986
No 259
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=116.00 Aligned_cols=80 Identities=29% Similarity=0.385 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|.+|+. ++..++|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34556899999999999999999999999999999999999899999999999999999999999 5778999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 89 ~a 90 (103)
T 2cqg_A 89 LP 90 (103)
T ss_dssp CC
T ss_pred ec
Confidence 87
No 260
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=9.2e-19 Score=114.22 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 183 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+. +++..++|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999899999999999999999999999 5999999999999987
No 261
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=118.89 Aligned_cols=81 Identities=31% Similarity=0.535 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 176 NFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 176 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
......++|||+|||..+++++|+++|++||.|..+.+..+.. .++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3345668999999999999999999999999999999998763 48899999999999999999999999999999999
Q ss_pred EeC
Q 025070 256 NKA 258 (258)
Q Consensus 256 ~~a 258 (258)
+||
T Consensus 102 ~~a 104 (109)
T 2err_A 102 NNA 104 (109)
T ss_dssp EEC
T ss_pred EEC
Confidence 997
No 262
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.1e-18 Score=118.88 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN--SLLEGQRIR 254 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 254 (258)
..++.++|||+|||+.+++++|+++|++||.|.++.++++ +|||||+|++.++|.+|+..|++ ..++|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456689999999999999999999999999999999863 69999999999999999999884 689999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|+||
T Consensus 101 V~~a 104 (119)
T 2ad9_A 101 IQFS 104 (119)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9997
No 263
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=114.26 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||+.+++++|+++|++| .|..+.++.+ .+|.++|+|||+|.+.++|.+|+. |||..++|+.|+|.+|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 455899999999999999999999999 9999999998 688999999999999999999999 9999999999999986
No 264
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.1e-18 Score=120.81 Aligned_cols=81 Identities=22% Similarity=0.462 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
....++|||+|||.++++++|+++|+.||.|..++++.+. +|.++|||||+|.+.++|++|++ ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999996 99999999999998
Q ss_pred cCCc
Q 025070 158 TEKP 161 (258)
Q Consensus 158 ~~~~ 161 (258)
+.+.
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 8654
No 265
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=117.37 Aligned_cols=82 Identities=26% Similarity=0.413 Sum_probs=73.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|||.++++++|+++|+.||.|..+ .. +|.++|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQ-DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EE-TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988766 22 7889999999999999999999999999999999999
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
.++.+..
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9997653
No 266
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=8.5e-20 Score=129.54 Aligned_cols=87 Identities=18% Similarity=0.318 Sum_probs=80.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeE--------eEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEK--------AEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~--------~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
..+.++|||+|||.++++++|+++|+.||.|.. ++++.+..+|.++|||||+|.+.++|++|++.||+..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456689999999999999999999999999998 999999878999999999999999999999999999999
Q ss_pred CeeEEEEecCCcchh
Q 025070 150 GREIKVNITEKPLVQ 164 (258)
Q Consensus 150 g~~l~v~~~~~~~~~ 164 (258)
|+.|.|.++.+....
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999766543
No 267
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=2e-18 Score=123.19 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=74.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCee--EeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVE--KAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~--~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
......++|||+|||+++|+++|+++|+.| .|. +|+++.|.. |+++|||||+|.+.++|++|++ +++..++|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 345667899999999999999999999999 666 999999984 9999999999999999999996 58899999999
Q ss_pred EEEecCCc
Q 025070 154 KVNITEKP 161 (258)
Q Consensus 154 ~v~~~~~~ 161 (258)
.|..+.+.
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99887543
No 268
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=115.28 Aligned_cols=80 Identities=23% Similarity=0.376 Sum_probs=70.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCC-eeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccCCeeEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGA-VEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG-TEIGGREIK 154 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~-i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~-~~~~g~~l~ 154 (258)
.....++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ ..+.|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456689999999999999999999999999 6666662 468999999999999999999999 999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999976543
No 269
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-18 Score=120.20 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
..++|||+|||.++++++|+++|++||.|..|.++. ++|||||+|.+.++|++|++.||+..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998864 56899999999999999999999999999999999986
Q ss_pred Cc
Q 025070 160 KP 161 (258)
Q Consensus 160 ~~ 161 (258)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 270
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=111.51 Aligned_cols=75 Identities=25% Similarity=0.457 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeEEE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSL-NNSLLEGQRIRVN 256 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~ 256 (258)
....++|||+|||..+++++|+++|++||.|..+.+.+ ++|+|||+|.+.++|.+|+..| +|..++|+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34558999999999999999999999999999999986 4699999999999999999998 9999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 97
No 271
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.5e-18 Score=115.95 Aligned_cols=79 Identities=18% Similarity=0.346 Sum_probs=70.8
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 77 PSEFARRVYIGNIPR-NIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~-~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
...+.++|||+|||. ++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 445678999999998 99999999999999999999983 689999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99966543
No 272
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=1.2e-17 Score=117.21 Aligned_cols=78 Identities=26% Similarity=0.516 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 77 PSEFARRVYIGNIPRN-IDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~-~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
+....++|||+|||.+ +++++|+++|+.||.|..+.+ ++|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999998 4689999999999999999999999999999999
Q ss_pred EecCCcc
Q 025070 156 NITEKPL 162 (258)
Q Consensus 156 ~~~~~~~ 162 (258)
.++....
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9997543
No 273
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=117.47 Aligned_cols=80 Identities=26% Similarity=0.477 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc--------C
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL--------E 249 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~--------~ 249 (258)
....++|||+|||..+++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999988 899999999999999999999999999999 5
Q ss_pred CeeeEEEeC
Q 025070 250 GQRIRVNKA 258 (258)
Q Consensus 250 g~~l~v~~a 258 (258)
|+.|.|.||
T Consensus 101 ~~~l~v~~a 109 (114)
T 1x5o_A 101 TEPLLCKFS 109 (114)
T ss_dssp SSCBEEEEC
T ss_pred CCceeEEcc
Confidence 788999997
No 274
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-18 Score=120.84 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQV-LSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
....++|||+|||+.+++++|+++|+.||.| ..+.++.++ +|.++|||||+|.+.++|.+|+.. ||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 889999988 899999999999999999999996 9999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
+|
T Consensus 90 ~a 91 (114)
T 2cpy_A 90 VV 91 (114)
T ss_dssp EE
T ss_pred EC
Confidence 86
No 275
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=2.1e-17 Score=116.88 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|..+.+..+. .++|||||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 345899999999999999999999999999999999754 56899999999999999999999999999999999997
No 276
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-18 Score=119.70 Aligned_cols=76 Identities=32% Similarity=0.613 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|.+|+.. +|..++|+.|+|.||
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 7899999999999999999999999999999999998999999999999999999999997 999999999999987
No 277
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.8e-18 Score=118.68 Aligned_cols=82 Identities=13% Similarity=0.232 Sum_probs=73.9
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCCc
Q 025070 82 RRVYIGNI----PRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT----VED----ANAVIE--KLNGTE 147 (258)
Q Consensus 82 ~~l~V~nl----~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~----~~~----A~~ai~--~l~~~~ 147 (258)
.+|||+|| |+.+++++|+++|+.||+|.++.++.|+.+|.++|||||+|.+ .++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 889998 789999
Q ss_pred cCCeeEEEEecCCcch
Q 025070 148 IGGREIKVNITEKPLV 163 (258)
Q Consensus 148 ~~g~~l~v~~~~~~~~ 163 (258)
++|+.|+|.+......
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999998865543
No 278
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=113.05 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=67.7
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCe-eeE
Q 025070 182 YKVYVGNLAKTV------TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ-RIR 254 (258)
Q Consensus 182 ~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~-~l~ 254 (258)
++|||+|||..+ ++++|+++|++||.|..+.+. +.+|.++|||||+|.+.++|.+|+..|||..++|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999987 45789999999999999999999999999999999 887
Q ss_pred EE
Q 025070 255 VN 256 (258)
Q Consensus 255 v~ 256 (258)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 279
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=116.05 Aligned_cols=79 Identities=23% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLS-AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....+|||+|||+.+++++|+++|.+||.|.. +.+..+ .+|.++|||||+|.+.++|.+|+.. ||..++||.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345689999999999999999999999999987 888887 6899999999999999999999997 9999999999998
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
+|
T Consensus 90 ~~ 91 (104)
T 1wg5_A 90 KS 91 (104)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 280
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.3e-18 Score=126.47 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
.....++|||+|||+++|+++|+++|++|| +.+|+++.+. +|+++|||||+|.+.++|++|+ .+|+..+.|+.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445668999999999999999999999999 6699999998 5999999999999999999999 889999999999999
Q ss_pred ecCCcc
Q 025070 157 ITEKPL 162 (258)
Q Consensus 157 ~~~~~~ 162 (258)
.+.+..
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 886654
No 281
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.3e-18 Score=117.93 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=71.0
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc-----C
Q 025070 77 PSEFARRVYI--GNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI-----G 149 (258)
Q Consensus 77 ~~~~~~~l~V--~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~-----~ 149 (258)
...+.++||| +||+.++++++|+++|++||.|.++.++. .+|||||+|.+.++|++|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3345688999 77999999999999999999999998863 368999999999999999999999988 6
Q ss_pred CeeEEEEecCCcch
Q 025070 150 GREIKVNITEKPLV 163 (258)
Q Consensus 150 g~~l~v~~~~~~~~ 163 (258)
|++|.|.++....+
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 89999999865443
No 282
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=113.76 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEe-EEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKA-EVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~-~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
....++|||+|||.++++++|+++|+.||.|..+ .++.+..+ |.|||+|.+.++|++|++.||+..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 47777643 339999999999999999999999999999999
Q ss_pred ecCCc
Q 025070 157 ITEKP 161 (258)
Q Consensus 157 ~~~~~ 161 (258)
++.+.
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99765
No 283
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=110.81 Aligned_cols=72 Identities=29% Similarity=0.570 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|..+.+. ++||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456899999999999999999999999999999987 489999999999999999999999999999999987
No 284
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=114.84 Aligned_cols=78 Identities=31% Similarity=0.485 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34566899999999999999999999999987 45555 578899999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 87 ~a 88 (101)
T 2fc9_A 87 LQ 88 (101)
T ss_dssp EC
T ss_pred Ec
Confidence 97
No 285
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=114.59 Aligned_cols=76 Identities=30% Similarity=0.501 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
...+.++|||+|||..+++++|+++|++||.|..+.+.+ .++||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 345668999999999999999999999999999999885 47999999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 85 ~a 86 (99)
T 2cpj_A 85 FA 86 (99)
T ss_dssp ES
T ss_pred Ec
Confidence 97
No 286
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=112.42 Aligned_cols=75 Identities=21% Similarity=0.409 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC--CeeeEE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE--GQRIRV 255 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~--g~~l~v 255 (258)
..+.++|||.|||..+++++|+++|++||.|..+.+..+ ++||||+|.+.++|.+|++.|||..++ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999998852 689999999999999999999999999 999999
Q ss_pred EeC
Q 025070 256 NKA 258 (258)
Q Consensus 256 ~~a 258 (258)
+||
T Consensus 88 ~~a 90 (97)
T 1why_A 88 DFA 90 (97)
T ss_dssp EEC
T ss_pred EEC
Confidence 997
No 287
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=9.1e-18 Score=117.34 Aligned_cols=75 Identities=27% Similarity=0.314 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...+|||+|||+.+++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|.+|++.|||..++|+.|+|++|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 447899999999999999999999999 8999888642 47899999999999999999999999999999999986
No 288
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=125.32 Aligned_cols=87 Identities=20% Similarity=0.313 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeE--E---eeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAE--V---IYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGR 151 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~--~---~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 151 (258)
...+.++|||+|||.++|+++|+++|+.||.|..+. + +....+|.++|||||+|.+.++|++|++.|||..+.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345678999999999999999999999999998751 1 11123788999999999999999999999999999999
Q ss_pred eEEEEecCCcch
Q 025070 152 EIKVNITEKPLV 163 (258)
Q Consensus 152 ~l~v~~~~~~~~ 163 (258)
.|.|.++.+...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 289
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.9e-17 Score=111.42 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=72.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 75 DTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
.....+.++|||+|+ ++|+++|+++|+.||.|..+.+. .++|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 344556789999996 99999999999999999999984 4678999999999999999999999999999999
Q ss_pred EEecCCcch
Q 025070 155 VNITEKPLV 163 (258)
Q Consensus 155 v~~~~~~~~ 163 (258)
|.++.+...
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 999976543
No 290
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=7.4e-18 Score=122.16 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQ---VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
...++|||+|||+.+++++|+++|++||. |..+.+++++. |.++|||||+|.+.++|.+|+. +||..++||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45589999999999999999999999999 88999999886 9999999999999999999999 9999999999999
Q ss_pred EeC
Q 025070 256 NKA 258 (258)
Q Consensus 256 ~~a 258 (258)
.+|
T Consensus 120 ~~a 122 (136)
T 2hgl_A 120 FKS 122 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 886
No 291
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=4.6e-17 Score=111.49 Aligned_cols=75 Identities=21% Similarity=0.430 Sum_probs=68.6
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 176 NFVDSPYKVYVGNLAK-TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 176 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
...+..++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3345668999999998 99999999999999999999884 58999999999999999999999999999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|+||
T Consensus 89 V~~a 92 (97)
T 2xnq_A 89 LEVS 92 (97)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9997
No 292
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=113.24 Aligned_cols=79 Identities=29% Similarity=0.482 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEe
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNI 157 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~ 157 (258)
....++|||+|||.++|+++|+++|+.||.|.+| +.+..+|. ||||+|.+.++|++|++ |++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4456899999999999999999999999999987 55554554 99999999999999998 999999999999998
Q ss_pred cCCcc
Q 025070 158 TEKPL 162 (258)
Q Consensus 158 ~~~~~ 162 (258)
+.+..
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86543
No 293
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=116.65 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 37899999999999999999999999999998874 5689999999999999999999999999999999996
No 294
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.7e-17 Score=111.59 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
..++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+.++|++|++.||+..++|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45889999999999999999999999 99999884 478999999999999999999999999999999999985
Q ss_pred Cc
Q 025070 160 KP 161 (258)
Q Consensus 160 ~~ 161 (258)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 295
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=115.47 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||+.+++++|+++|++||.+ .+.++.++ +|.++|||||+|.+.++|.+|+. +|+..++||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455899999999999999999999999955 99999988 89999999999999999999995 799999999999986
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 89 ~ 89 (102)
T 1wez_A 89 N 89 (102)
T ss_dssp E
T ss_pred C
Confidence 4
No 296
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=1.3e-17 Score=132.02 Aligned_cols=79 Identities=27% Similarity=0.375 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKG--QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..++|||+|||+.+++++|+++|++|| .|..+.|++++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 7
No 297
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=1e-17 Score=114.84 Aligned_cols=77 Identities=29% Similarity=0.421 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLK----KCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
++.++|||+|||..+++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999 9999999999998874 457789999999999999999999999999999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|+||
T Consensus 83 v~~a 86 (97)
T 1nu4_A 83 IQYA 86 (97)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9997
No 298
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=9.3e-18 Score=119.18 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQ---VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRV 255 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 255 (258)
...++|||+|||+.+++++|+++|+.||. |..+.++.+.. |.++|||||+|.+.++|.+|+. +||..++|+.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45588999999999999999999999999 89999999886 8999999999999999999999 9999999999999
Q ss_pred EeC
Q 025070 256 NKA 258 (258)
Q Consensus 256 ~~a 258 (258)
.+|
T Consensus 93 ~~a 95 (118)
T 2db1_A 93 FKS 95 (118)
T ss_dssp EEE
T ss_pred EEC
Confidence 875
No 299
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-18 Score=122.39 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||+.+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|.+|+. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455899999999999999999999999999886677777789999999999999999999999 999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 101 a 101 (124)
T 1wel_A 101 I 101 (124)
T ss_dssp E
T ss_pred C
Confidence 6
No 300
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=108.36 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=65.7
Q ss_pred CCce-EEEcCCCCCCCHHH----HHHHHhhCC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 80 FARR-VYIGNIPRNIDNDE----LTKIVQEHG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 80 ~~~~-l~V~nl~~~~t~~~----L~~~F~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
+..+ |||+|||.++++++ |+++|++|| .|.+| +| |+|||.|.+.++|++|++.|+|..+.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999988 558999995 99888 34 999999999999999999999999999999
Q ss_pred EEEecCCcch
Q 025070 154 KVNITEKPLV 163 (258)
Q Consensus 154 ~v~~~~~~~~ 163 (258)
+|.++.....
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999976643
No 301
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=3.1e-17 Score=114.60 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 177 FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 177 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.....++|||+|||..+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999988 5899999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 99 ~a 100 (108)
T 2jvo_A 99 YS 100 (108)
T ss_dssp SC
T ss_pred Ee
Confidence 87
No 302
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-17 Score=113.69 Aligned_cols=73 Identities=33% Similarity=0.402 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCC-----eee
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG-----QRI 253 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g-----~~l 253 (258)
...++|||.|||+.+++++|+++|.+||.|..+.++.+ +||||+|.+.++|.+|++.|||..++| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 44589999999999999999999999999999999864 899999999999999999999999999 999
Q ss_pred EEEeC
Q 025070 254 RVNKA 258 (258)
Q Consensus 254 ~v~~a 258 (258)
+|.+|
T Consensus 86 ~V~~a 90 (108)
T 1x4c_A 86 RVKVD 90 (108)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99987
No 303
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=113.30 Aligned_cols=78 Identities=32% Similarity=0.546 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||.|||..+++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45668999999999999999999999874 567788888899999999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 89 a 89 (102)
T 2fc8_A 89 A 89 (102)
T ss_dssp C
T ss_pred e
Confidence 7
No 304
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=114.47 Aligned_cols=74 Identities=31% Similarity=0.578 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45689999999999999999999999999999999864 799999999999999999999999999999999997
No 305
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.3e-17 Score=113.96 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|.++.+. .++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999988 3679999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 98 a 98 (101)
T 2la4_A 98 G 98 (101)
T ss_dssp C
T ss_pred c
Confidence 7
No 306
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.6e-18 Score=117.16 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeE
Q 025070 178 VDSPYKVYVGNLAKT-VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN--SLLEGQRIR 254 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 254 (258)
..+.++|||+|||+. +++++|+++|++||.|.++.+.+ .+|||||+|.+.++|.+|++.|++ ..++|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445689999999998 99999999999999999999974 579999999999999999998865 569999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|+||
T Consensus 96 V~~a 99 (112)
T 1x4f_A 96 VDLS 99 (112)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9986
No 307
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=5.3e-17 Score=120.15 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEe
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG--REIKVNI 157 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g--~~l~v~~ 157 (258)
.-.+|||+||+..+|+++|+++|++||.|.+|.+..+. ++|||||+|.+.++|++|++.|||..+.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34568999999999999999999999999999996543 57899999999999999999999999965 9999999
Q ss_pred cCCcc
Q 025070 158 TEKPL 162 (258)
Q Consensus 158 ~~~~~ 162 (258)
+++..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98663
No 308
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=7.6e-18 Score=117.60 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQ---VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
.....+|||+|||+.+++++|+++|+.||. |..+.++.++. |.++|+|||+|.+.++|.+|+. +||..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345689999999999999999999999988 89999999886 9999999999999999999999 999999999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|.+|
T Consensus 86 V~~a 89 (107)
T 2lmi_A 86 VYEI 89 (107)
T ss_dssp CEEC
T ss_pred EEEC
Confidence 9886
No 309
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-18 Score=119.09 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |||..++|+.|+|.||
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45689999999999999999999999999887 666777788999999999999999999999 9999999999999987
No 310
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=109.42 Aligned_cols=73 Identities=34% Similarity=0.660 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+.+ +||||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999884 4899999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 78 a 78 (90)
T 2dnp_A 78 S 78 (90)
T ss_dssp S
T ss_pred C
Confidence 7
No 311
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=109.84 Aligned_cols=73 Identities=32% Similarity=0.549 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||..+++++|+++|++||.|..+.+.+ +||||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 44568999999999999999999999999999999884 4999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 79 a 79 (92)
T 2dgt_A 79 S 79 (92)
T ss_dssp S
T ss_pred c
Confidence 7
No 312
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=113.78 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=70.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+|+|+|||+.+++++|+++|+.| .|..+.|+.++. |.++|+|||+|.+.++|.+|+ .+||..++||.|.|..|
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 689999999999999999999999 899999999875 899999999999999999999 59999999999999875
No 313
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-17 Score=116.64 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=70.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCC----HHH----HHHHHH--HhcCCc
Q 025070 182 YKVYVGNL----AKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS----EED----AEAAIS--SLNNSL 247 (258)
Q Consensus 182 ~~l~v~nl----~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~----~~~----A~~A~~--~l~g~~ 247 (258)
.+|+|+|| |+.+++++|+++|+.||.|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 889988 889999
Q ss_pred cCCeeeEEEe
Q 025070 248 LEGQRIRVNK 257 (258)
Q Consensus 248 ~~g~~l~v~~ 257 (258)
|+|+.|+|.+
T Consensus 83 I~Gr~irV~l 92 (136)
T 2j8a_A 83 IMGFKFEVIL 92 (136)
T ss_dssp ETTEEEEEEE
T ss_pred ecCcEEEEEE
Confidence 9999999975
No 314
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=1.1e-16 Score=110.91 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEeeCCCC-CCCccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 025070 179 DSPYKVYVGNLAK-----TVTSEMLKKCFSEKGQVLSAKVLRVPGT-SKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252 (258)
Q Consensus 179 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~v~~~~i~~~~~~-~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 252 (258)
.++++|+|.|+.. .-++++|+++|++||.|.++.|++++.+ +.++|+|||+|.+.++|.+|++.|||+.++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3558999999963 2368999999999999999999998654 678999999999999999999999999999999
Q ss_pred eEEEeC
Q 025070 253 IRVNKA 258 (258)
Q Consensus 253 l~v~~a 258 (258)
|+|.||
T Consensus 86 i~v~~a 91 (105)
T 2pe8_A 86 VKACFY 91 (105)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999987
No 315
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-18 Score=119.64 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCe----EEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQV----LSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 253 (258)
..+.++|||+|||..+++++|+++|.+||.| ..+.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3456899999999999999999999999998 444444 67899999999999999999999999999999999
Q ss_pred EEEeC
Q 025070 254 RVNKA 258 (258)
Q Consensus 254 ~v~~a 258 (258)
+|+||
T Consensus 98 ~v~~a 102 (115)
T 2cpx_A 98 VIEFG 102 (115)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99997
No 316
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=111.25 Aligned_cols=76 Identities=26% Similarity=0.362 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|||+.+++++|+++|++||.|. +.++. +.++|||||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999996 56664 35789999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 91 a 91 (97)
T 2e5j_A 91 A 91 (97)
T ss_dssp C
T ss_pred c
Confidence 7
No 317
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=113.99 Aligned_cols=72 Identities=36% Similarity=0.597 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
++|||+|||..+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 47999999999999999999999999999999975 6799999999999999999999999999999999987
No 318
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=110.11 Aligned_cols=76 Identities=36% Similarity=0.531 Sum_probs=69.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 025070 175 SNFVDSPYKVYVGNLAKTVTSEMLKKCFSEK--GQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR 252 (258)
Q Consensus 175 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 252 (258)
.......++|||+|||+.+++++|+++|++| |.|..+.+. ++||||+|.+.++|.+|+..|||..++|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3344566899999999999999999999999 999988765 479999999999999999999999999999
Q ss_pred eEEEeC
Q 025070 253 IRVNKA 258 (258)
Q Consensus 253 l~v~~a 258 (258)
|+|+||
T Consensus 81 l~v~~a 86 (99)
T 2cpd_A 81 IEVTLA 86 (99)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999987
No 319
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=1.1e-16 Score=114.13 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEec
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF-AFVMMKTVEDANAVIEKLNGTEIGG--REIKVNIT 158 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~-afV~f~~~~~A~~ai~~l~~~~~~g--~~l~v~~~ 158 (258)
-.|||+||++.+|+++|+++|++||.|.+|+++.+. +|+ |||+|.+.++|++|++.|||..+.| +.|+|.++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 467899999999999999999999999999987653 577 9999999999999999999999988 99999999
Q ss_pred CCcc
Q 025070 159 EKPL 162 (258)
Q Consensus 159 ~~~~ 162 (258)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7653
No 320
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=8.5e-17 Score=111.48 Aligned_cols=73 Identities=34% Similarity=0.540 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
..+.++|||+|||+.+++++|+++|++||.|..+.+.+ +||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 34568999999999999999999999999999998873 5899999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 80 a 80 (103)
T 2dgu_A 80 A 80 (103)
T ss_dssp C
T ss_pred c
Confidence 7
No 321
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=4.8e-17 Score=123.61 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||.|||..+++++|+++|++||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999988 889999999999999999999999999999999999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 164 a 164 (177)
T 2f3j_A 164 V 164 (177)
T ss_dssp E
T ss_pred e
Confidence 6
No 322
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=114.84 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=69.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYT---GRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIK 154 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~---~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~ 154 (258)
....++|||+|||.++|+++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++|++.|+ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 888887766 7999999999999999999999884 36788887
Q ss_pred EEecC
Q 025070 155 VNITE 159 (258)
Q Consensus 155 v~~~~ 159 (258)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 76543
No 323
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=7.8e-18 Score=122.41 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=70.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHh
Q 025070 124 RFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFS 203 (258)
Q Consensus 124 g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 203 (258)
|+|+.+|...+.+..++..+... ++|...--... ...........++|||+|||+.+++++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~ 68 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 68 (139)
T ss_dssp --------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 57888888887777666543222 22222211000 001112234457899999999999999999999
Q ss_pred cCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 204 EKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 204 ~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
+|| +..+.|++++. |.++|||||+|.+.++|.+|+ .+|+..++|+.|+|.+|
T Consensus 69 ~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 69 PLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp SCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred hcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 999 66999999885 999999999999999999999 68999999999999765
No 324
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-18 Score=123.66 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLS--------AKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g 250 (258)
.+.++|||+|||..+++++|+++|++||.|.. +.++.++.++.++|||||+|.+.++|.+|+..|||..++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34588999999999999999999999999998 8999988889999999999999999999999999999999
Q ss_pred eeeEEEeC
Q 025070 251 QRIRVNKA 258 (258)
Q Consensus 251 ~~l~v~~a 258 (258)
+.|+|.||
T Consensus 85 ~~l~V~~a 92 (116)
T 2lcw_A 85 NPIKVSFA 92 (116)
Confidence 99999986
No 325
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=110.76 Aligned_cols=76 Identities=26% Similarity=0.273 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSA-KVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~-~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
...++|||+|||+.+++++|+++|.+||.|..+ .++.++.+ +.|||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345889999999999999999999999999999 47876643 3399999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 89 a 89 (96)
T 2e44_A 89 I 89 (96)
T ss_dssp C
T ss_pred c
Confidence 7
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=6.4e-17 Score=108.49 Aligned_cols=73 Identities=26% Similarity=0.563 Sum_probs=67.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhC----C-------CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEH----G-------AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGT 146 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~----G-------~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~ 146 (258)
..+.++|||+|||.++++++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3456899999999999999999999999 8 8999988654 689999999999999999 99999
Q ss_pred ccCCeeEEEEe
Q 025070 147 EIGGREIKVNI 157 (258)
Q Consensus 147 ~~~g~~l~v~~ 157 (258)
.+.|+.|.|..
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999974
No 327
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-17 Score=113.29 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 445899999999999999999999999988766 236788999999999999999999999999999999999987
No 328
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=4.2e-17 Score=115.26 Aligned_cols=76 Identities=25% Similarity=0.330 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCee-----E
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGRE-----I 153 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~-----l 153 (258)
....+|||+|||.++++++|+++|+.||.|..+.++.+ |||||+|.+.++|++||+.||+..++|+. +
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999765 89999999999999999999999999998 7
Q ss_pred EEEecCCc
Q 025070 154 KVNITEKP 161 (258)
Q Consensus 154 ~v~~~~~~ 161 (258)
.|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776554
No 329
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=2e-16 Score=109.59 Aligned_cols=83 Identities=20% Similarity=0.173 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCC-----CCCHHHHHHHHhhCCCeeEeEEeeeCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 025070 78 SEFARRVYIGNIPR-----NIDNDELTKIVQEHGAVEKAEVIYDKYT-GRSRRFAFVMMKTVEDANAVIEKLNGTEIGGR 151 (258)
Q Consensus 78 ~~~~~~l~V~nl~~-----~~t~~~L~~~F~~~G~i~~~~~~~~~~~-~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~ 151 (258)
..++++|+|+|+.. +-++++|++.|++||.|.++.+++++.+ +.++|+|||+|.+.++|++|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999952 2378999999999999999999998643 68899999999999999999999999999999
Q ss_pred eEEEEecCC
Q 025070 152 EIKVNITEK 160 (258)
Q Consensus 152 ~l~v~~~~~ 160 (258)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 330
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=9.6e-17 Score=108.03 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=62.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--cCCeeEE
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTE--IGGREIK 154 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~--~~g~~l~ 154 (258)
...+..+|||+|||+++|+++|+++|++||.|.+++++.+ ++|||||+|.+.++|++ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4456689999999999999999999999999999999874 68999999999999984 34544 4699999
Q ss_pred EEecCCcc
Q 025070 155 VNITEKPL 162 (258)
Q Consensus 155 v~~~~~~~ 162 (258)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987654
No 331
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.9e-17 Score=114.55 Aligned_cols=75 Identities=24% Similarity=0.529 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.++|||+|||..+++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|.+|+. +|..++|+.|.|.+|
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 4789999999999999999999999999999999998 89999999999999999999999 999999999999875
No 332
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.8e-17 Score=110.49 Aligned_cols=73 Identities=22% Similarity=0.484 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 178 VDSPYKVYVGNLAK-TVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 178 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
.++.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34568999999998 99999999999999999999885 5899999999999999999999999999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 79 ~a 80 (96)
T 2kvi_A 79 VS 80 (96)
T ss_dssp EE
T ss_pred Ec
Confidence 86
No 333
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=1.8e-16 Score=113.04 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=66.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccE-EEEEeCCHHHHHHHHHHhcCCccCC--eeeEEEeC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF-GFVTFSSEEDAEAAISSLNNSLLEG--QRIRVNKA 258 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~-~fV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a 258 (258)
-.|||+||++.+++++|+++|++||.|.++.+..+ .+|+ |||+|.+.++|.+|++.|||..|.| +.|+|+||
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 56789999999999999999999999999988863 3577 9999999999999999999999988 99999997
No 334
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=104.67 Aligned_cols=69 Identities=28% Similarity=0.322 Sum_probs=62.0
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHHhcC-CCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 025070 180 SPYK-VYVGNLAKTVTSEM----LKKCFSEK-GQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRI 253 (258)
Q Consensus 180 ~~~~-l~v~nl~~~~~~~~----l~~~f~~~-G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 253 (258)
+..+ |||.|||+.+++++ |+++|++| |.|.++ ++ |+|||+|.+.++|.+|++.|+|..+.||.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999988 55899999 599887 23 999999999999999999999999999999
Q ss_pred EEEeC
Q 025070 254 RVNKA 258 (258)
Q Consensus 254 ~v~~a 258 (258)
+|+||
T Consensus 77 ~v~~A 81 (96)
T 2diu_A 77 IVSFT 81 (96)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 99997
No 335
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.7e-17 Score=112.40 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=67.4
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc-----CC
Q 025070 178 VDSPYKVYV--GNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL-----EG 250 (258)
Q Consensus 178 ~~~~~~l~v--~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~-----~g 250 (258)
..+.++||| +||++.+++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|++.|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345688999 66999999999999999999999988763 378999999999999999999999988 68
Q ss_pred eeeEEEeC
Q 025070 251 QRIRVNKA 258 (258)
Q Consensus 251 ~~l~v~~a 258 (258)
+.|.|.||
T Consensus 96 ~~l~v~~a 103 (114)
T 2cq2_A 96 ITLYLNFV 103 (114)
T ss_dssp EECEEEEE
T ss_pred cEEEEEec
Confidence 99999886
No 336
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=5.2e-16 Score=110.21 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCC--eeEEEEecC
Q 025070 83 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRF-AFVMMKTVEDANAVIEKLNGTEIGG--REIKVNITE 159 (258)
Q Consensus 83 ~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~-afV~f~~~~~A~~ai~~l~~~~~~g--~~l~v~~~~ 159 (258)
.|||+||+..+|+++|+++|++||.|.+|.++.. .|| |||+|.+.++|++|++.|||..+.| +.|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999999642 276 9999999999999999999999987 699999997
Q ss_pred Ccc
Q 025070 160 KPL 162 (258)
Q Consensus 160 ~~~ 162 (258)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 664
No 337
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=9.8e-17 Score=107.85 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=67.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..++|||+|||+.+++++|+++|++| .|..+.+. .++|||||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 45789999999999999999999999 99999885 47899999999999999999999999999999999997
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.9e-16 Score=112.70 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=71.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 025070 76 TPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKV 155 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v 155 (258)
....+.++|||+|+ ++|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999995 79999999999999999999985 46799999999999999999999999999999999
Q ss_pred EecCCcch
Q 025070 156 NITEKPLV 163 (258)
Q Consensus 156 ~~~~~~~~ 163 (258)
.++.+...
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99976643
No 339
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=107.28 Aligned_cols=73 Identities=26% Similarity=0.347 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..++|||+|||..+++++|+++|++||.|..+ +.++.+|. ||||+|.+.++|.+|+. |||..++|+.|+|.+|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 44799999999999999999999999999987 55555544 99999999999999999 9999999999999876
No 340
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=1.3e-16 Score=111.81 Aligned_cols=71 Identities=34% Similarity=0.568 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 180 SPYKVYVGNLAKT-VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 180 ~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..++|||+|||+. +++++|+++|++||.|..+.+ +++||||+|.+.++|.+|+..|||..++|+.|+|+||
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999988 3689999999999999999999999999999999987
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=2e-16 Score=121.89 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=73.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
..++|||+|||.++|+++|+++|++||.|..++++++. +|.++|||||+|.+.++|++|++.+ +..+.|+.|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 45899999999999999999999999999999999988 6999999999999999999999654 568999999999886
Q ss_pred Ccc
Q 025070 160 KPL 162 (258)
Q Consensus 160 ~~~ 162 (258)
...
T Consensus 186 ~y~ 188 (193)
T 2voo_A 186 DYF 188 (193)
T ss_dssp TC-
T ss_pred HHH
Confidence 654
No 342
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=108.75 Aligned_cols=73 Identities=29% Similarity=0.510 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcC-CccCCeeeEEE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQ-VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN-SLLEGQRIRVN 256 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 256 (258)
...++|||+|||..+++++|+++|++||. |..+.+. +++||||+|.+.++|.+|++.||| ..++|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45589999999999999999999999999 5555553 478999999999999999999999 99999999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
||
T Consensus 79 ~a 80 (93)
T 2cqh_A 79 YS 80 (93)
T ss_dssp EC
T ss_pred Ec
Confidence 97
No 343
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=8.9e-17 Score=114.69 Aligned_cols=77 Identities=26% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE--EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL--SAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVN 256 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 256 (258)
....+|||+|||+.+++++|+++|++| .|. .+.|+.++. |.++|||||+|.+.++|.+|+. +++..++||.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 455889999999999999999999999 677 899999886 9999999999999999999999 47899999999987
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
+|
T Consensus 117 ~a 118 (126)
T 2hgm_A 117 KS 118 (126)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 344
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=2.5e-16 Score=116.49 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCC--eeeEEEeC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG--QRIRVNKA 258 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a 258 (258)
..+|||+||++.+++++|+++|++||.|.++.+..+ ..+++|||+|.+.++|.+|++.|||..|.| +.|+|+||
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 356899999999999999999999999999998753 357899999999999999999999999955 99999997
No 345
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6e-16 Score=105.94 Aligned_cols=73 Identities=26% Similarity=0.409 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEe
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNK 257 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 257 (258)
....++|||+|+ .+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999995 89999999999999999999985 4679999999999999999999999999999999999
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 84 a 84 (97)
T 1x5p_A 84 A 84 (97)
T ss_dssp C
T ss_pred C
Confidence 7
No 346
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=115.71 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe----EEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQV----LSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
....+|||+|||+.+++++|+++|++||.| ..+.++.+. +|.++|+|||+|.+.++|.+|+.. |+..++||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345899999999999999999999999875 689999884 899999999999999999999996 99999999998
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|..|
T Consensus 99 V~~a 102 (123)
T 2dha_A 99 LFRS 102 (123)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 8754
No 347
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=115.65 Aligned_cols=78 Identities=27% Similarity=0.374 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE--------EEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC
Q 025070 178 VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSA--------KVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~--------~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~ 249 (258)
..+.++|||+|||+.+++++|+++|++||.|..+ .+. .+|.++|||||+|.+.++|.+|+..|||..++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4566899999999999999999999999998763 333 36789999999999999999999999999999
Q ss_pred CeeeEEEeC
Q 025070 250 GQRIRVNKA 258 (258)
Q Consensus 250 g~~l~v~~a 258 (258)
|+.|+|.||
T Consensus 119 g~~l~V~~a 127 (143)
T 3egn_A 119 GKPMVVQFA 127 (143)
T ss_dssp TEECEEEEC
T ss_pred CcEEEEEEC
Confidence 999999997
No 348
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=9.3e-16 Score=108.92 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccE-EEEEeCCHHHHHHHHHHhcCCccCC--eeeEEEeC
Q 025070 183 KVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGF-GFVTFSSEEDAEAAISSLNNSLLEG--QRIRVNKA 258 (258)
Q Consensus 183 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~-~fV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a 258 (258)
.|||+||++.+++++|+++|++||.|.++.+... .|+ |||+|.+.++|.+|++.|||..|.| +.|+|+||
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4679999999999999999999999999999752 275 9999999999999999999999987 69999987
No 349
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1e-16 Score=107.72 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEec
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNIT 158 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~ 158 (258)
.+.++|||+|||.++++++|+++|+.||.|.+++++.+ ++|||||+|.+.++|++|.. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999999764 68999999999999986542 234568999999998
Q ss_pred CCcch
Q 025070 159 EKPLV 163 (258)
Q Consensus 159 ~~~~~ 163 (258)
.+...
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 350
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=9.3e-16 Score=118.15 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHh--CCCccCCeeEEEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE
Q 025070 132 TVEDANAVIEKL--NGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVL 209 (258)
Q Consensus 132 ~~~~A~~ai~~l--~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 209 (258)
+.+.+..|++.. ....+.+....+................ .....++|||+|||+.+++++|+++|++||.|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~-----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 137 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYK-----NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVL 137 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHH-----HHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhh-----hccccCEEEecCCCCcCCHHHHHHHHhcCCCEE
Confidence 667788888766 4445555555555442111100000000 001237899999999999999999999999999
Q ss_pred EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 210 SAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 210 ~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+.+.++. +|.++|+|||+|++.++|.+|+..++ ..++|+.|.|.|+
T Consensus 138 ~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 138 NIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp EEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred EEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 99999876 48899999999999999999998654 5999999999985
No 351
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=6.5e-16 Score=109.11 Aligned_cols=71 Identities=34% Similarity=0.433 Sum_probs=64.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCee-----eE
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQR-----IR 254 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~-----l~ 254 (258)
..++|||.|||+.+++++|+++|++||.|..+.++.+ |||||+|.+.++|.+|++.|||..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3478999999999999999999999999999999863 89999999999999999999999999998 55
Q ss_pred EEe
Q 025070 255 VNK 257 (258)
Q Consensus 255 v~~ 257 (258)
|..
T Consensus 88 v~~ 90 (115)
T 3beg_B 88 VKV 90 (115)
T ss_dssp EEE
T ss_pred ecc
Confidence 554
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=9.6e-16 Score=106.16 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhcCCCeEEEEEeeCCCC--CCCccEEEEEeCCHHHHHHHHHHhcCC
Q 025070 179 DSPYKVYVGNL--AKTVT--------SEMLKKCFSEKGQVLSAKVLRVPGT--SKSSGFGFVTFSSEEDAEAAISSLNNS 246 (258)
Q Consensus 179 ~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~v~~~~i~~~~~~--~~~~~~~fV~f~~~~~A~~A~~~l~g~ 246 (258)
.+++.|.+.|+ |..+. +++|++.|++||.|.++.|+++..+ +.++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 43443 3789999999999999999987754 367899999999999999999999999
Q ss_pred ccCCeeeEEEeC
Q 025070 247 LLEGQRIRVNKA 258 (258)
Q Consensus 247 ~~~g~~l~v~~a 258 (258)
.++||.|+|+|+
T Consensus 83 ~f~GR~i~v~~~ 94 (105)
T 3v4m_A 83 KFANRVVVTKYC 94 (105)
T ss_dssp EETTEECEEEEE
T ss_pred EeCCCEEEEEEe
Confidence 999999999984
No 353
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.4e-15 Score=102.22 Aligned_cols=71 Identities=27% Similarity=0.480 Sum_probs=61.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCc--cCCeeeEEE
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSL--LEGQRIRVN 256 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~--~~g~~l~v~ 256 (258)
....+|||+|||+.+++++|+++|++||.|.++.++++ ++|||||+|.+.++|.+ ++|.. ++|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45589999999999999999999999999999999873 68999999999999873 56665 459999999
Q ss_pred eC
Q 025070 257 KA 258 (258)
Q Consensus 257 ~a 258 (258)
+|
T Consensus 80 ~a 81 (89)
T 3d2w_A 80 NA 81 (89)
T ss_dssp EC
T ss_pred Ec
Confidence 87
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=108.33 Aligned_cols=64 Identities=20% Similarity=0.402 Sum_probs=59.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCC---CCCccEEEEEeCCHHHHHHHHHHh
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGT---SKSSGFGFVTFSSEEDAEAAISSL 243 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~---~~~~~~~fV~f~~~~~A~~A~~~l 243 (258)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3458899999999999999999999999999 888887766 799999999999999999999998
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.3e-15 Score=102.00 Aligned_cols=71 Identities=24% Similarity=0.596 Sum_probs=66.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccC
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEK----G-------QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLE 249 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~ 249 (258)
.++|||+|||+.+++++|+++|++| | .|.++.+.+ .+|||||+|.+.++|.+|+ .|||..++
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4789999999999999999999999 8 899999885 3799999999999999999 99999999
Q ss_pred CeeeEEEeC
Q 025070 250 GQRIRVNKA 258 (258)
Q Consensus 250 g~~l~v~~a 258 (258)
|+.|+|+..
T Consensus 79 g~~l~V~rp 87 (87)
T 2hzc_A 79 GQSLKIRRP 87 (87)
T ss_dssp TEECEEECC
T ss_pred CeEEEEeCC
Confidence 999999863
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.3e-15 Score=103.19 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=70.8
Q ss_pred CCCCCCceEEEcCCCCCC-----------CHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 025070 76 TPSEFARRVYIGNIPRNI-----------DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144 (258)
Q Consensus 76 ~~~~~~~~l~V~nl~~~~-----------t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~ 144 (258)
..+.++++|+|.||.... ++++|+++|++||.|.++.+ .+. .++|||||+|.+.++|++|++.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 455678999999994333 25899999999999999966 443 379999999999999999999999
Q ss_pred CCccCCeeEEEEecCCcc
Q 025070 145 GTEIGGREIKVNITEKPL 162 (258)
Q Consensus 145 ~~~~~g~~l~v~~~~~~~ 162 (258)
|..+.|+.|.|.++.+..
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999987643
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=1.6e-15 Score=119.62 Aligned_cols=79 Identities=15% Similarity=0.303 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 025070 78 SEFARRVYIGNIPRNI---------DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI 148 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~---------t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~ 148 (258)
....++|||+|||.++ ++++|+++|++||+|.+|+++. ++|||||+|.+.++|+.|++.|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 7999999999999999999985 469999999999999999999999999
Q ss_pred ------------CCeeEEEEecCCcc
Q 025070 149 ------------GGREIKVNITEKPL 162 (258)
Q Consensus 149 ------------~g~~l~v~~~~~~~ 162 (258)
.|+.|.|.|+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=3.3e-15 Score=106.31 Aligned_cols=72 Identities=26% Similarity=0.423 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 179 DSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
...++|||+|+ .+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999995 69999999999999999999886 46799999999999999999999999999999999997
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=3.6e-15 Score=103.25 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHHhhCCCeeEeEEeeeCCC--CCcccEEEEEeCCHHHHHHHHHHhCCC
Q 025070 79 EFARRVYIGNI--PRNID--------NDELTKIVQEHGAVEKAEVIYDKYT--GRSRRFAFVMMKTVEDANAVIEKLNGT 146 (258)
Q Consensus 79 ~~~~~l~V~nl--~~~~t--------~~~L~~~F~~~G~i~~~~~~~~~~~--~~~~g~afV~f~~~~~A~~ai~~l~~~ 146 (258)
.+++.|.+.|+ |.++. +++|++.|++||.|.++.++++..+ +.++|+|||+|.+.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 44543 3689999999999999999988744 368999999999999999999999999
Q ss_pred ccCCeeEEEEecCCc
Q 025070 147 EIGGREIKVNITEKP 161 (258)
Q Consensus 147 ~~~g~~l~v~~~~~~ 161 (258)
.++||.|.|.+....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987543
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=4.8e-15 Score=104.57 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=71.1
Q ss_pred CCceEEEcCC--CCCC---CHHHHHHHHhhCCCeeEeEEeeeCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 025070 80 FARRVYIGNI--PRNI---DNDELTKIVQEHGAVEKAEVIYDKY----TGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG 150 (258)
Q Consensus 80 ~~~~l~V~nl--~~~~---t~~~L~~~F~~~G~i~~~~~~~~~~----~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 150 (258)
++++|++.|+ |.++ -+++|++.|++||.|.++.++++.. ++.++|++||+|.+.++|++|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5689999998 3222 3789999999999999999999864 35678999999999999999999999999999
Q ss_pred eeEEEEecCC
Q 025070 151 REIKVNITEK 160 (258)
Q Consensus 151 ~~l~v~~~~~ 160 (258)
|.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998854
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=4e-15 Score=104.97 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHHhcCCCeEEEEEeeCCC----CCCCccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 025070 180 SPYKVYVGNLAK--TV---TSEMLKKCFSEKGQVLSAKVLRVPG----TSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250 (258)
Q Consensus 180 ~~~~l~v~nl~~--~~---~~~~l~~~f~~~G~v~~~~i~~~~~----~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g 250 (258)
++++|++.|+-. .+ .++||++.|++||.|.++.|+++.. ++.++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 458899999933 22 3689999999999999999998764 35667999999999999999999999999999
Q ss_pred eeeEEEeC
Q 025070 251 QRIRVNKA 258 (258)
Q Consensus 251 ~~l~v~~a 258 (258)
|.|+|.|+
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999984
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=5e-15 Score=116.76 Aligned_cols=75 Identities=27% Similarity=0.416 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc
Q 025070 178 VDSPYKVYVGNLAKTV---------TSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~ 248 (258)
....++|||+||+..+ ++++|+++|++||.|.++.++. .+|||||+|.+.++|..|+++|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4456899999999998 7999999999999999999985 579999999999999999999999999
Q ss_pred ------------CCeeeEEEeC
Q 025070 249 ------------EGQRIRVNKA 258 (258)
Q Consensus 249 ------------~g~~l~v~~a 258 (258)
+|+.|.|.||
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA 226 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWA 226 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEEC
T ss_pred eccccccccccCCCCEEEEEEc
Confidence 8999999998
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=102.37 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 025070 178 VDSPYKVYVGNLAKTVT-----------SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~ 246 (258)
..+.++|+|.||..... +++|+++|++||.|..+.| .++ .++|+|||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45568999999954432 5899999999999999966 444 47899999999999999999999999
Q ss_pred ccCCeeeEEEeC
Q 025070 247 LLEGQRIRVNKA 258 (258)
Q Consensus 247 ~~~g~~l~v~~a 258 (258)
.++|+.|+|.||
T Consensus 88 ~~~gr~l~v~~a 99 (112)
T 2dit_A 88 WFGGRQITAQAW 99 (112)
T ss_dssp EETTEECEEEEC
T ss_pred EECCcEEEEEEe
Confidence 999999999987
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=1.2e-15 Score=105.60 Aligned_cols=71 Identities=30% Similarity=0.420 Sum_probs=61.4
Q ss_pred cCCCCCCCHHHHHHHH------------hcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 187 GNLAKTVTSEMLKKCF------------SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 187 ~nl~~~~~~~~l~~~f------------~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
.|||..+++++|++.| ++||.|.++.+.++.. +.++|+|||+|.+.++|.+|+..|||+.++||.|+
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 4555566666665555 9999999999998764 78899999999999999999999999999999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=9.1e-16 Score=106.13 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=64.2
Q ss_pred EcCCCCCCCHHHHHHHH------------hhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 86 IGNIPRNIDNDELTKIV------------QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 86 V~nl~~~~t~~~L~~~F------------~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
+.|||..+++++|++.| ++||.|.++.++++. ++.++|||||+|.+.++|++|++.|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777887777666 999999999999887 58899999999999999999999999999999999
Q ss_pred EEEec
Q 025070 154 KVNIT 158 (258)
Q Consensus 154 ~v~~~ 158 (258)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 366
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-15 Score=100.66 Aligned_cols=70 Identities=26% Similarity=0.503 Sum_probs=61.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC--ccCCeeeEEEe
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS--LLEGQRIRVNK 257 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~ 257 (258)
..++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|.+ +++. .++|+.|+|.|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEe
Confidence 4589999999999999999999999999999998863 67999999999999975 4444 45899999998
Q ss_pred C
Q 025070 258 A 258 (258)
Q Consensus 258 a 258 (258)
|
T Consensus 75 a 75 (88)
T 1wf0_A 75 A 75 (88)
T ss_dssp C
T ss_pred c
Confidence 6
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-13 Score=93.06 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=62.8
Q ss_pred CceEEEcCCC-------CCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 81 ARRVYIGNIP-------RNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 81 ~~~l~V~nl~-------~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
.+.|.|.-.. .++++++|+++|++||.|.+|.++ +.++|||||+|.+.++|++|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4456665443 468999999999999999999997 46789999999999999999987544 689999
Q ss_pred EEEecCCcc
Q 025070 154 KVNITEKPL 162 (258)
Q Consensus 154 ~v~~~~~~~ 162 (258)
.|.|+....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987654
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=1.1e-13 Score=96.88 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc
Q 025070 179 DSPYKVYVGNLAKTVT----------SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 179 ~~~~~l~v~nl~~~~~----------~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~ 248 (258)
.+++.|.+.|+-..-. +++|++.|++||.|.++.+.++. ++|+|||+|.+.++|.+|++.|||+.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567899999833221 36889999999999999987643 589999999999999999999999999
Q ss_pred CCeeeEEEeC
Q 025070 249 EGQRIRVNKA 258 (258)
Q Consensus 249 ~g~~l~v~~a 258 (258)
+||.|+|+|+
T Consensus 81 ~GR~i~v~~~ 90 (114)
T 3s6e_A 81 AGKMITAAYV 90 (114)
T ss_dssp TTEECEEEEE
T ss_pred CCEEEEEEEE
Confidence 9999999985
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.48 E-value=3.6e-13 Score=94.30 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=67.9
Q ss_pred CCCceEEEcCC--CCCC--------CHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 025070 79 EFARRVYIGNI--PRNI--------DNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI 148 (258)
Q Consensus 79 ~~~~~l~V~nl--~~~~--------t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~ 148 (258)
.+++.|.+.|+ |.+. .+++|++.|++||.|.++.+.++. .+|+|||+|.+.++|++|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45688999988 3331 245789999999999999986553 589999999999999999999999999
Q ss_pred CCeeEEEEecCCcch
Q 025070 149 GGREIKVNITEKPLV 163 (258)
Q Consensus 149 ~g~~l~v~~~~~~~~ 163 (258)
+||.|.|.++.....
T Consensus 81 ~GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 81 AGKMITAAYVPLPTY 95 (114)
T ss_dssp TTEECEEEEECHHHH
T ss_pred CCEEEEEEEEcHHHH
Confidence 999999999865433
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=1.6e-13 Score=113.80 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=67.3
Q ss_pred CCCCCCceEEEcC--CCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC---C
Q 025070 76 TPSEFARRVYIGN--IPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIG---G 150 (258)
Q Consensus 76 ~~~~~~~~l~V~n--l~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~---g 150 (258)
....++++|||+| |+.++|+++|+++|++||.|.++.+.. +||||||+|.+.++|++|++.|||..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 4567789999999 578999999999999999999987753 4799999999999999999999999872 4
Q ss_pred e--eEEEEecC
Q 025070 151 R--EIKVNITE 159 (258)
Q Consensus 151 ~--~l~v~~~~ 159 (258)
+ .+.+.+..
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 57777774
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-12 Score=89.40 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 191 KTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 191 ~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
..+++++|+++|++||.|..+.++. .++|||||+|.+.++|.+|++.+++ +.|+.|+|+||
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 5689999999999999999999883 6789999999999999999997555 67999999997
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=1.5e-12 Score=108.06 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=64.1
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCcc---CCe-
Q 025070 178 VDSPYKVYVGN--LAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLL---EGQ- 251 (258)
Q Consensus 178 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~---~g~- 251 (258)
..+.++|||+| |+..+++++|+++|++||.|.++.+.. ++|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45668999999 578999999999999999999877653 579999999999999999999999987 245
Q ss_pred -eeEEEeC
Q 025070 252 -RIRVNKA 258 (258)
Q Consensus 252 -~l~v~~a 258 (258)
.+.+.|+
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 5777764
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.5e-11 Score=79.02 Aligned_cols=71 Identities=23% Similarity=0.224 Sum_probs=59.5
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 025070 179 DSPYKVYVGNLAK----TVTS----EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG 250 (258)
Q Consensus 179 ~~~~~l~v~nl~~----~~~~----~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g 250 (258)
++..+++|...+. +.-+ .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|+. |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4456777766652 2333 6789999999999999999754 8999999999999999 99999999
Q ss_pred eeeEEEeC
Q 025070 251 QRIRVNKA 258 (258)
Q Consensus 251 ~~l~v~~a 258 (258)
|.|+|++|
T Consensus 76 r~LkV~lk 83 (91)
T 2dnr_A 76 RTITIALK 83 (91)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99999986
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.5e-11 Score=79.03 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=63.8
Q ss_pred CCCceEEEcCCCC----CCCH----HHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 025070 79 EFARRVYIGNIPR----NIDN----DELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG 150 (258)
Q Consensus 79 ~~~~~l~V~nl~~----~~t~----~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g 150 (258)
++..||+|.-.|. +.-. .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|++ |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 3456788876652 3333 6799999999999999998764 9999999999999996 99999999
Q ss_pred eeEEEEecCCcch
Q 025070 151 REIKVNITEKPLV 163 (258)
Q Consensus 151 ~~l~v~~~~~~~~ 163 (258)
|.|+|.++.+.+.
T Consensus 76 r~LkV~lkt~dW~ 88 (91)
T 2dnr_A 76 RTITIALKSPSGP 88 (91)
T ss_dssp EEEEEEECCCSSC
T ss_pred eEEEEEeCCCCcc
Confidence 9999999976653
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=7.7e-11 Score=82.53 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCC-HHHHHHHHHHhc--CCccCCeee
Q 025070 178 VDSPYKVYVGNLAKT-VTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSS-EEDAEAAISSLN--NSLLEGQRI 253 (258)
Q Consensus 178 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~-~~~A~~A~~~l~--g~~~~g~~l 253 (258)
.+....|+|.|+++. ++.++|+++|++||.|.+|.+..+.. .|||+|.+ ..+|..|+.+|| |..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 455688999999999 99999999999999999999997653 49999999 899999999995 778999888
Q ss_pred EEEe
Q 025070 254 RVNK 257 (258)
Q Consensus 254 ~v~~ 257 (258)
+++.
T Consensus 89 ~~ev 92 (121)
T 1owx_A 89 TWEV 92 (121)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.19 E-value=2.5e-10 Score=89.74 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=59.4
Q ss_pred CCHHHHHHHHhcCCCeEEEEEeeCC----CCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 193 VTSEMLKKCFSEKGQVLSAKVLRVP----GTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 193 ~~~~~l~~~f~~~G~v~~~~i~~~~----~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
-.+++|++.|++||.|.++.|.++. .++.++|++||+|.+.++|.+|++.|||+.++||.|.+.|+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 3568999999999999999998544 44588999999999999999999999999999999999885
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.4e-10 Score=81.28 Aligned_cols=81 Identities=10% Similarity=0.186 Sum_probs=70.3
Q ss_pred CCCCCCCceEEEcCCCCC-CCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCccCC
Q 025070 75 DTPSEFARRVYIGNIPRN-IDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKT-VEDANAVIEKLN--GTEIGG 150 (258)
Q Consensus 75 ~~~~~~~~~l~V~nl~~~-~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~-~~~A~~ai~~l~--~~~~~g 150 (258)
+..-.....|+|+||+.+ ++.++|+++|+.||+|..|.+.++.. .|||.|.+ .++|..|++.++ +..+.|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 445667789999999999 99999999999999999999988763 69999999 899999999994 777889
Q ss_pred eeEEEEecCCc
Q 025070 151 REIKVNITEKP 161 (258)
Q Consensus 151 ~~l~v~~~~~~ 161 (258)
..+.+......
T Consensus 86 ~~~~~evL~Ge 96 (121)
T 1owx_A 86 KEVTWEVLEGE 96 (121)
T ss_dssp SSEEEEECCHH
T ss_pred cEEEEEECCCH
Confidence 88888766433
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=3.9e-10 Score=74.43 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=62.1
Q ss_pred CCCCceEEEcCCCCC-----CCH----HHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 025070 78 SEFARRVYIGNIPRN-----IDN----DELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEI 148 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~-----~t~----~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~ 148 (258)
-++..||+|.-++.. .-. .+|.+.|..||.|..+++..|. +||+|.+.++|.+||+ |+|..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345678999987643 222 5689999999999999998775 9999999999999997 999999
Q ss_pred CCeeEEEEecC
Q 025070 149 GGREIKVNITE 159 (258)
Q Consensus 149 ~g~~l~v~~~~ 159 (258)
.||.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998764
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.04 E-value=6.4e-10 Score=87.40 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=61.0
Q ss_pred CCHHHHHHHHhhCCCeeEeEEeeeCCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecCC
Q 025070 93 IDNDELTKIVQEHGAVEKAEVIYDKYT----GRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 160 (258)
Q Consensus 93 ~t~~~L~~~F~~~G~i~~~~~~~~~~~----~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~~ 160 (258)
-.+++|++.|++||.|.++.++++..+ +.++|++||+|.+.++|++|++.|||..++||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 356789999999999999999866533 48999999999999999999999999999999999998753
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=3.3e-10 Score=74.74 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=61.0
Q ss_pred CCCCCCCeEEEcCCCCC-----C-CH---HHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 025070 176 NFVDSPYKVYVGNLAKT-----V-TS---EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNS 246 (258)
Q Consensus 176 ~~~~~~~~l~v~nl~~~-----~-~~---~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~ 246 (258)
...++..+++|..++.. . ++ .+|.+.|..||.|..+++..+. +||+|.+.++|.+|+. |||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 34456678988877643 2 22 5688999999999999999754 9999999999999999 9999
Q ss_pred ccCCeeeEEEe
Q 025070 247 LLEGQRIRVNK 257 (258)
Q Consensus 247 ~~~g~~l~v~~ 257 (258)
.++||.|+|++
T Consensus 81 ~v~Gr~L~V~~ 91 (95)
T 1ufw_A 81 KVKGRAVKISG 91 (95)
T ss_dssp EETTEEEEEEC
T ss_pred eeCCeEEEEec
Confidence 99999999986
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=7.3e-09 Score=69.65 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC-----CCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSEK-----GQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
..++|-+-|||+.+++..|+.+++++ |.+..+.+..| .+-|+|+|.+...|.+|...|+|..|+||.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 99999988853 46699999999999999999999999999999
Q ss_pred EE
Q 025070 255 VN 256 (258)
Q Consensus 255 v~ 256 (258)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.3e-07 Score=63.68 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhC-----CCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEH-----GAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~-----G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
...++|-+-|||..++...|+.+.+.+ |.+..+.+..|. +-|+|+|.+...|-+|.-.|+|..+.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346899999999999999999999999 999999999987 469999999999999998999999999999
Q ss_pred EEEec
Q 025070 154 KVNIT 158 (258)
Q Consensus 154 ~v~~~ 158 (258)
++.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99754
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.39 E-value=1.1e-06 Score=59.03 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 180 SPYKVYVGNLAKTV-T----SEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 180 ~~~~l~v~nl~~~~-~----~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
.+++|+|+|++..+ . .+.++++|..|+.+......+ +=.-.-|.|.++++|.+|...||+..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC------cceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998854 2 257799999999988888775 234589999999999999999999999999999
Q ss_pred EEeC
Q 025070 255 VNKA 258 (258)
Q Consensus 255 v~~a 258 (258)
|-||
T Consensus 78 ~YFg 81 (104)
T 1wey_A 78 LYFA 81 (104)
T ss_dssp EECC
T ss_pred EEec
Confidence 9876
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=5.2e-06 Score=55.41 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh-----CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQE-----HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREI 153 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~-----~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l 153 (258)
....+|.|.|||+++.++.|.-+|+. =|+|.++.... +-|+|.|.+.+.|++.++ -..+.+.+.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 34578999999999999999999997 25888888754 369999999999999995 34788999999
Q ss_pred EEEecCCcchhhhhhhhhhccCCCCCCCCeEEEcCCCCCCC
Q 025070 154 KVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVT 194 (258)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 194 (258)
.|....+ ..+.+|.+++|++.++
T Consensus 77 sV~P~~~------------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPP------------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCC------------------CCCCCCCCCSCCCCCC
T ss_pred EEEcCCC------------------CCcceEeeecCCCCCC
Confidence 9975432 2336788999988765
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.19 E-value=1.6e-05 Score=52.46 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=48.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 025070 77 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKL 143 (258)
Q Consensus 77 ~~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l 143 (258)
.+.....++| ++|++....||.++|+.||.| .|+++-|- .|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3334455666 999999999999999999966 68888775 7999999999999999765
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.09 E-value=3e-05 Score=51.11 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=55.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCC--CccEEEEEeCCHHHHHHHHHHhcCCcc
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSK--SSGFGFVTFSSEEDAEAAISSLNNSLL 248 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~--~~~~~fV~f~~~~~A~~A~~~l~g~~~ 248 (258)
.+|.|++||+++|++++.+.+...+.+..........+.. ....|||.|.+.+++..-.+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4789999999999999999999998887777765443222 234699999999999999999999976
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.03 E-value=2.2e-05 Score=51.81 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=56.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCC--cccEEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~--~~g~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
.+|.|++||+.+|++++.+.++..+.+.....+....+.. .-.-|||.|.+.+++....+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999998887777765543322 2346999999999999999999999873
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=2.1e-05 Score=52.78 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=63.5
Q ss_pred ceEEEcCCCCCC-CH----HHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEE
Q 025070 82 RRVYIGNIPRNI-DN----DELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 156 (258)
Q Consensus 82 ~~l~V~nl~~~~-t~----~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~ 156 (258)
++|+|.||+.++ .. +.++++|..|+++.....++.- +-.-|.|.+.++|.+|-..||+..++|+.+++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 689999998876 32 4678899999999988887665 258999999999999999999999999999999
Q ss_pred ecCC
Q 025070 157 ITEK 160 (258)
Q Consensus 157 ~~~~ 160 (258)
++.+
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9973
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.68 E-value=4.1e-05 Score=50.62 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=46.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~ 144 (258)
..++| ++|++....||.++|+.||.| .|+++-|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34556 999999999999999999955 78888775 79999999999999998664
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.63 E-value=0.00027 Score=48.69 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=54.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCC-eeeEE
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEG-QRIRV 255 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g-~~l~v 255 (258)
.+.|.|.+.|+.. ...+...|++||.|.+.... ....+..|+|.+..+|.+|+. .||..++| ..|=|
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 4779999999885 67788899999999987762 245789999999999999999 69999985 44444
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00026 Score=48.79 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=59.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-eeEEEE
Q 025070 78 SEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGG-REIKVN 156 (258)
Q Consensus 78 ~~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g-~~l~v~ 156 (258)
....+-|.|-++|+.. ...|.+.|++||.|.+.... . ...+-.|+|.++.+|++|| ..||..++| ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEE
Confidence 3446789999999885 77888999999999888762 2 2349999999999999999 569999974 666676
Q ss_pred ecC
Q 025070 157 ITE 159 (258)
Q Consensus 157 ~~~ 159 (258)
...
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 643
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00094 Score=44.56 Aligned_cols=68 Identities=29% Similarity=0.382 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-----CCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 025070 180 SPYKVYVGNLAKTVTSEMLKKCFSE-----KGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIR 254 (258)
Q Consensus 180 ~~~~l~v~nl~~~~~~~~l~~~f~~-----~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 254 (258)
...+|.|.|||+.++++.|.-+|+. -|.|..+.... +-|+|+|.+.+.|.+.+. -....+.|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 3478999999999999999999987 26788887763 458999999999998887 235677777777
Q ss_pred EE
Q 025070 255 VN 256 (258)
Q Consensus 255 v~ 256 (258)
|.
T Consensus 78 V~ 79 (104)
T 2dhx_A 78 LR 79 (104)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.52 E-value=0.00019 Score=47.52 Aligned_cols=78 Identities=12% Similarity=0.056 Sum_probs=55.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCC--CCccEEEEEeCCHHHHHHHHHHhcCCccCCe-----ee
Q 025070 181 PYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTS--KSSGFGFVTFSSEEDAEAAISSLNNSLLEGQ-----RI 253 (258)
Q Consensus 181 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~--~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~-----~l 253 (258)
+-+|.|+.||+.+|++++.+.+...-.+..........+. ..-..|||.|.+.++...-.+.++|..+-+. ..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999999988886555443333222111 1123689999999999999999999876322 34
Q ss_pred EEEeC
Q 025070 254 RVNKA 258 (258)
Q Consensus 254 ~v~~a 258 (258)
.|+||
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.47 E-value=0.00057 Score=45.04 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~ 244 (258)
..+++ ++|+.+...||.++|++||.|. |..+.| ..|||.|.+++.|..|+.+++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 55666 9999999999999999998553 444433 459999999999999999774
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.44 E-value=0.0001 Score=48.82 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=51.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCC--cccEEEEEeCCHHHHHHHHHHhCCCccC
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGR--SRRFAFVMMKTVEDANAVIEKLNGTEIG 149 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~--~~g~afV~f~~~~~A~~ai~~l~~~~~~ 149 (258)
+-+|.|+.||+.+|++++.+.++.+-++.....+....+.. .-.-|||.|.+.++.....+.++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45799999999999999988888765554433332221111 1235999999999999999999998873
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.85 E-value=0.0014 Score=43.37 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~ 244 (258)
..+++ ++|..+...||.++|++||.| .|..+.| ..|||.|.+++.|..|+.+++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34666 999999999999999999844 3555543 459999999999999999775
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.53 E-value=0.0072 Score=42.23 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=51.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeeC------------CCCC-CCccEEEEEeCCHHHHHHHHHHhcCCc
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLS-AKVLRV------------PGTS-KSSGFGFVTFSSEEDAEAAISSLNNSL 247 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-~~i~~~------------~~~~-~~~~~~fV~f~~~~~A~~A~~~l~g~~ 247 (258)
..|.|.+.|+... ..+.+.|++||.|.. ....+. +... ....+..|+|++..+|.+|++ -||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 5677889966554 567788999999865 211110 0000 124678999999999999999 79999
Q ss_pred cCCeeeEEE
Q 025070 248 LEGQRIRVN 256 (258)
Q Consensus 248 ~~g~~l~v~ 256 (258)
|+|..|=|.
T Consensus 86 i~G~mIGV~ 94 (132)
T 3p3d_A 86 FNGVLLGVI 94 (132)
T ss_dssp ETTEECEEE
T ss_pred eCcEEEEEE
Confidence 999876654
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.45 E-value=0.0019 Score=55.46 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=43.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHH
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIE 141 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~ 141 (258)
...|.|+|. .|.+.++++|.++|++||+|.++.+..+. | -||.|+|.+.++++.++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 355789998 79999999999999999999999887653 2 599999999999998774
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.15 E-value=0.011 Score=41.22 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=53.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhCCCeeE-eEEeeeC--------CCC-----CcccEEEEEeCCHHHHHHHHHHhCCC
Q 025070 81 ARRVYIGNIPRNIDNDELTKIVQEHGAVEK-AEVIYDK--------YTG-----RSRRFAFVMMKTVEDANAVIEKLNGT 146 (258)
Q Consensus 81 ~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~-~~~~~~~--------~~~-----~~~g~afV~f~~~~~A~~ai~~l~~~ 146 (258)
...|.|-+.|++.+ ..+.+.|++||.|.+ .....+. ... ....+..|+|.+..+|++|+ ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 35688888866654 567788999999865 2111100 000 12457899999999999999 56999
Q ss_pred ccCCeeEEEEecC
Q 025070 147 EIGGREIKVNITE 159 (258)
Q Consensus 147 ~~~g~~l~v~~~~ 159 (258)
.+.|.-|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877777664
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.05 E-value=0.013 Score=50.41 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=41.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~ 241 (258)
+.|+|. .|...++.+|.+.|++||.|.++....+. ..|+.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 789997 79999999999999999999999888643 3799999999998886654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.67 E-value=0.12 Score=45.07 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=46.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 025070 80 FARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144 (258)
Q Consensus 80 ~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~ 144 (258)
....++|+ +|..+...+|.+.|+.||.+ +|+++.+. .|||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 34567776 99999999999999999965 67766554 79999999999999998874
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.48 E-value=2 Score=37.47 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNN 245 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g 245 (258)
..++++ +|..+...+|.++|+.||.+ +|..+ ....|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-------ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-------DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-------SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-------cCCeEEEEECCHHHHHHHHHHHHh
Confidence 455665 99999999999999999954 34433 235699999999999999998854
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=75.07 E-value=14 Score=23.66 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 025070 182 YKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLN 244 (258)
Q Consensus 182 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~ 244 (258)
+-+.|-|+|..+-..++.-...-.|---.+..+. |.|.++|.+.++-+.|+++|-
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 5677889999999888887777778766676663 559999999999999998873
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=61.04 E-value=5.6 Score=24.44 Aligned_cols=58 Identities=12% Similarity=0.267 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHhcCCC-----eEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEEeC
Q 025070 192 TVTSEMLKKCFSEKGQ-----VLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISSLNNSLLEGQRIRVNKA 258 (258)
Q Consensus 192 ~~~~~~l~~~f~~~G~-----v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 258 (258)
.+...+|...+..-+. |-.+.+.. .+.||+-.. ..|.+++..|++..+.|+.++++.|
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 3555666666654333 44455542 468888876 4577889999999999999998765
No 405
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.51 E-value=42 Score=21.31 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=39.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 025070 84 VYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai 140 (258)
-|+--++.+.+..+|++.++. || .|..+..+..+ .|. .-|||......+|....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHH
Confidence 444556889999999999988 66 67788777655 332 35999998777766544
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=51.17 E-value=45 Score=21.25 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=46.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 025070 79 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLN 144 (258)
Q Consensus 79 ~~~~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~ 144 (258)
+..+-+.+-|+|..+-..++.-...-.|---.|..+ .|.|.+.|.+.++...|++.|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 445778999999999998888777778765555553 2469999999999999998863
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.22 E-value=46 Score=24.22 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=34.1
Q ss_pred eEEEcCCCC---------CCCHHHHHHHH--hhCCCeeEeEEeeeCCCCCcccEEEEEeCCHH
Q 025070 83 RVYIGNIPR---------NIDNDELTKIV--QEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVE 134 (258)
Q Consensus 83 ~l~V~nl~~---------~~t~~~L~~~F--~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~ 134 (258)
.+.|.|+|. .....+|++.| ..|.++. ++.+.+. .| ..|+|.|.|...-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-LG-HSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-SB-EEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-CC-CceeEEEEecCCh
Confidence 345566665 24568999977 8998874 6666665 34 6689999997643
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.51 E-value=70 Score=23.25 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=33.3
Q ss_pred CeEEEcCCCC---------CCCHHHHHHHH--hcCCCeEEEEEeeCCCCCCCccEEEEEeCCH
Q 025070 182 YKVYVGNLAK---------TVTSEMLKKCF--SEKGQVLSAKVLRVPGTSKSSGFGFVTFSSE 233 (258)
Q Consensus 182 ~~l~v~nl~~---------~~~~~~l~~~f--~~~G~v~~~~i~~~~~~~~~~~~~fV~f~~~ 233 (258)
....|.|+|. .....+|++.| ..|..+.-..+. .+. ..+|++.|.|.+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~-~~~--Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLW-NYL--GHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEE-CSS--BEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecc-cCC--CCceeEEEEecCC
Confidence 3556677776 24457899977 889777644444 332 4678899999874
No 409
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.46 E-value=72 Score=20.22 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=39.9
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 025070 185 YVGNLAKTVTSEMLKKCFSE-KG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAISS 242 (258)
Q Consensus 185 ~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~~ 242 (258)
++...+...+..+|++.++. || .|..+.....+ ....-|||++....+|.....+
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~---~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP---RGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT---TSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC---CCceEEEEEcCCCCcHHHHHHh
Confidence 34456889999999999987 66 57788777654 2334599999887777665543
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.05 E-value=80 Score=20.09 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=24.9
Q ss_pred CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 025070 107 AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNG 145 (258)
Q Consensus 107 ~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~ 145 (258)
.|.++.++. ...||-||++...++...+++...+
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 355555543 3789999999999998888865543
No 411
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=35.86 E-value=52 Score=20.82 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=38.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHH
Q 025070 84 VYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAV 139 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~a 139 (258)
-|+-.++.+.+..+|++.++. || .|..+..+.-+ .| ..-|+|......+|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHHH
Confidence 445557889999999999987 67 67788777655 22 23599999876665443
No 412
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=35.83 E-value=38 Score=19.96 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=16.0
Q ss_pred EeEEeeeCCCCCcccEEEEEeCC
Q 025070 110 KAEVIYDKYTGRSRRFAFVMMKT 132 (258)
Q Consensus 110 ~~~~~~~~~~~~~~g~afV~f~~ 132 (258)
.++++.+. .....|+++|.|++
T Consensus 21 ~arlllnr-Rps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNR-RPPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTB-CCSSTTEEEEEETT
T ss_pred hhhhhhcc-CCCcCceEEEEEec
Confidence 45555555 45678999999986
No 413
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=30.23 E-value=95 Score=21.77 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=38.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 025070 84 VYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai 140 (258)
-|+--++.+.+..+|++.++. || .|..|..+..+ +|. .-|||.+....+|....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~--KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NGT--KKAYVRLTADYDALDIA 136 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TSC--EEEEEEECTTCCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCc--eEEEEEeCCCCcHHHHH
Confidence 444456789999999999887 66 67788777665 332 25999998766665543
No 414
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=29.52 E-value=1.1e+02 Score=21.74 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=38.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 025070 84 VYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai 140 (258)
-|+--++.+.+..+|++.++. || .|..|..+..+ +|. .-|||.+....+|....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g~--KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TGN--KKAYIRLAADSDSLTLA 144 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TSC--EEEEEEECSSSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCc--EEEEEEcCCCCcHHHHH
Confidence 444446789999999999887 66 67788777665 332 25999998766665543
No 415
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=29.40 E-value=64 Score=21.43 Aligned_cols=47 Identities=9% Similarity=-0.059 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHhh-CCCeeEeEEee----eCCCCCcccEEEEEeCCHHHHHH
Q 025070 91 RNIDNDELTKIVQE-HGAVEKAEVIY----DKYTGRSRRFAFVMMKTVEDANA 138 (258)
Q Consensus 91 ~~~t~~~L~~~F~~-~G~i~~~~~~~----~~~~~~~~g~afV~f~~~~~A~~ 138 (258)
...+..+|++.+.. |+.-.++.++. ..-.|++.|||.| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35678888887765 55322222222 2223567788877 677777665
No 416
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=28.11 E-value=56 Score=21.46 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHhh-CCCeeEeEE---e-eeCCCCCcccEEEEEeCCHHHHHHHH
Q 025070 91 RNIDNDELTKIVQE-HGAVEKAEV---I-YDKYTGRSRRFAFVMMKTVEDANAVI 140 (258)
Q Consensus 91 ~~~t~~~L~~~F~~-~G~i~~~~~---~-~~~~~~~~~g~afV~f~~~~~A~~ai 140 (258)
...+..+|++.+.. |+.-.++.+ + +..-.|++.|||.| |.+.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45678888887776 443222222 2 22223567777766 66666665543
No 417
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.45 E-value=58 Score=21.41 Aligned_cols=47 Identities=6% Similarity=-0.100 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHhh-CCCeeEeEE----eeeCCCCCcccEEEEEeCCHHHHHH
Q 025070 91 RNIDNDELTKIVQE-HGAVEKAEV----IYDKYTGRSRRFAFVMMKTVEDANA 138 (258)
Q Consensus 91 ~~~t~~~L~~~F~~-~G~i~~~~~----~~~~~~~~~~g~afV~f~~~~~A~~ 138 (258)
...+..+|++.+.. |+.-.++.+ .+..-.|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45678888887775 442222222 222223567778877 677776654
No 418
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.41 E-value=17 Score=25.74 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCCeEEEEEeeCCCCCCCccEEEEEeC
Q 025070 196 EMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFS 231 (258)
Q Consensus 196 ~~l~~~f~~~G~v~~~~i~~~~~~~~~~~~~fV~f~ 231 (258)
+|+.+++...|.|+... ..+||+||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 34455666667666543 45689999865
No 419
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=24.05 E-value=1.8e+02 Score=20.53 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=38.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 025070 184 VYVGNLAKTVTSEMLKKCFSE-KG-QVLSAKVLRVPGTSKSSGFGFVTFSSEEDAEAAIS 241 (258)
Q Consensus 184 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~~~~~fV~f~~~~~A~~A~~ 241 (258)
-++.-++...+..+|++.++. || .|..+..+..+. ...-|||++....+|.....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~---g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT---GNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC---CcEEEEEEcCCCCcHHHHHH
Confidence 344456788999999988887 55 577887776552 23459999988777665544
No 420
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=23.59 E-value=95 Score=22.04 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 025070 84 VYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai 140 (258)
-|+--++.+.+..+|++.++. || .|..|..+..+ +|. .-|||.+....+|....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~--KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DGK--KKAYVKLTPDYDALDVA 146 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TSS--EEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CCc--eEEEEEcCCCCcHHHHH
Confidence 444446789999999998887 66 67788777655 332 25999998776665543
No 421
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.56 E-value=1.4e+02 Score=21.23 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=38.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHH
Q 025070 84 VYIGNIPRNIDNDELTKIVQE-HG-AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVI 140 (258)
Q Consensus 84 l~V~nl~~~~t~~~L~~~F~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai 140 (258)
-|+--++.+.+..+|++.++. || .|..|..+.-. .| ..-|||.+....+|....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~~--~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP-DG--EKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECS-SS--CEEEEEEECTTSCHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcC-CC--ceEEEEEECCCCcHHHHH
Confidence 445557889999999999987 66 67788777655 22 235999998766654444
No 422
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=22.44 E-value=58 Score=21.23 Aligned_cols=46 Identities=7% Similarity=0.166 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHhh-CCCeeEeEEeeeCCC----CCcccEEEEEeCCHHHHHH
Q 025070 92 NIDNDELTKIVQE-HGAVEKAEVIYDKYT----GRSRRFAFVMMKTVEDANA 138 (258)
Q Consensus 92 ~~t~~~L~~~F~~-~G~i~~~~~~~~~~~----~~~~g~afV~f~~~~~A~~ 138 (258)
..+..+|++.+.. |+.-.++.++..-.+ |++.|||.| |.+.+.|.+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5577888887665 443333334333322 456667766 444444443
No 423
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.95 E-value=90 Score=20.39 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHhh-CCCeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEEecC
Q 025070 88 NIPRNIDNDELTKIVQE-HGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 159 (258)
Q Consensus 88 nl~~~~t~~~L~~~F~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~~~g~~l~v~~~~ 159 (258)
.++.-+.-++|+..... ||.-.++... +. -..|-..+.+|-++|++.|+.. -.-+.|+|-...
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEec
Confidence 45678888888876654 8987777765 22 3789999999999999876533 344555554443
No 424
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.72 E-value=1.1e+02 Score=20.09 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=26.6
Q ss_pred CeeEeEEeeeCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 025070 107 AVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTE 147 (258)
Q Consensus 107 ~i~~~~~~~~~~~~~~~g~afV~f~~~~~A~~ai~~l~~~~ 147 (258)
.|.++..+ ..-+||-||+=.+..+...|++.+.+..
T Consensus 40 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAP-----EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEEC-----TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEec-----CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 45566553 2258999999999999999997665443
No 425
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=21.52 E-value=1.3e+02 Score=21.25 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHhh-CCCeeEeEEeeeCC----CCCcccEEEEEeCCHHHHHH
Q 025070 91 RNIDNDELTKIVQE-HGAVEKAEVIYDKY----TGRSRRFAFVMMKTVEDANA 138 (258)
Q Consensus 91 ~~~t~~~L~~~F~~-~G~i~~~~~~~~~~----~~~~~g~afV~f~~~~~A~~ 138 (258)
...+-.+|++.+.. |+.-.++.++.... .|.+.|||.| |.+.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 35678889887776 55423333333222 2567778887 677777664
No 426
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.95 E-value=1e+02 Score=24.11 Aligned_cols=32 Identities=16% Similarity=0.419 Sum_probs=25.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhCCCeeEeEEe
Q 025070 82 RRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVI 114 (258)
Q Consensus 82 ~~l~V~nl~~~~t~~~L~~~F~~~G~i~~~~~~ 114 (258)
.-+.|+|+|++++..-|.+++.. +.+..+.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 46899999999999999999987 666544443
No 427
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.84 E-value=80 Score=18.87 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=9.0
Q ss_pred CccEEEEEeCCH
Q 025070 222 SSGFGFVTFSSE 233 (258)
Q Consensus 222 ~~~~~fV~f~~~ 233 (258)
.++.|+|.|++.
T Consensus 36 ~~~~ClV~FeD~ 47 (68)
T 2e5p_A 36 AREVCLVQFEDD 47 (68)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 356799999874
No 428
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=20.74 E-value=80 Score=18.89 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=8.9
Q ss_pred CccEEEEEeCC
Q 025070 222 SSGFGFVTFSS 232 (258)
Q Consensus 222 ~~~~~fV~f~~ 232 (258)
.++.|+|+|.+
T Consensus 40 ~~gtC~V~F~D 50 (66)
T 2eqj_A 40 LKQSCFIIFED 50 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCcEEEEEEcc
Confidence 45789999987
No 429
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=20.62 E-value=1.1e+02 Score=21.22 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHhh-CCCeeEeEEee----eCCCCCcccEEEEEeCCHHHHHH
Q 025070 91 RNIDNDELTKIVQE-HGAVEKAEVIY----DKYTGRSRRFAFVMMKTVEDANA 138 (258)
Q Consensus 91 ~~~t~~~L~~~F~~-~G~i~~~~~~~----~~~~~~~~g~afV~f~~~~~A~~ 138 (258)
...+..+|++.+.. |+.-.++.++. ..-.|.+.|||.| |.+.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 35688999998866 55322322222 2223567778877 677776654
Done!