Query 025071
Match_columns 258
No_of_seqs 261 out of 2207
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 9.3E-23 2E-27 182.1 15.0 163 74-251 25-237 (238)
2 PF01209 Ubie_methyltran: ubiE 99.8 2.2E-21 4.8E-26 172.8 8.5 127 113-239 45-220 (233)
3 PLN02233 ubiquinone biosynthes 99.8 2.7E-18 5.8E-23 155.0 17.5 134 112-245 70-255 (261)
4 PLN02244 tocopherol O-methyltr 99.8 1.8E-18 3.9E-23 161.6 15.6 125 114-238 117-277 (340)
5 PF08241 Methyltransf_11: Meth 99.8 4.3E-19 9.3E-24 132.5 8.2 82 120-201 1-95 (95)
6 PRK14103 trans-aconitate 2-met 99.8 1.9E-17 4.2E-22 148.0 14.6 146 87-233 1-178 (255)
7 PRK05785 hypothetical protein; 99.7 3.7E-17 8E-22 144.7 15.8 137 115-253 51-226 (226)
8 PF13489 Methyltransf_23: Meth 99.7 7.2E-18 1.6E-22 137.9 9.7 123 113-236 20-160 (161)
9 KOG1540 Ubiquinone biosynthesi 99.7 1E-17 2.2E-22 149.9 11.0 148 74-236 74-278 (296)
10 PRK10258 biotin biosynthesis p 99.7 7.1E-17 1.5E-21 143.6 16.4 119 114-233 41-181 (251)
11 PLN02396 hexaprenyldihydroxybe 99.7 3.8E-17 8.3E-22 152.1 14.6 119 115-234 131-284 (322)
12 TIGR02752 MenG_heptapren 2-hep 99.7 1E-16 2.3E-21 140.4 14.8 140 112-251 42-231 (231)
13 TIGR00452 methyltransferase, p 99.7 2.2E-16 4.9E-21 146.5 13.7 127 113-240 119-274 (314)
14 PRK15068 tRNA mo(5)U34 methylt 99.7 2.3E-16 5E-21 146.6 13.2 125 114-239 121-274 (322)
15 PTZ00098 phosphoethanolamine N 99.7 4.7E-16 1E-20 140.5 14.7 133 107-239 44-202 (263)
16 PRK11036 putative S-adenosyl-L 99.7 1.2E-15 2.5E-20 136.7 14.2 122 114-236 43-204 (255)
17 PLN02336 phosphoethanolamine N 99.7 2.2E-15 4.8E-20 145.8 15.7 130 107-236 258-411 (475)
18 PRK01683 trans-aconitate 2-met 99.6 2.4E-15 5.2E-20 134.1 12.8 116 88-204 4-131 (258)
19 PRK11207 tellurite resistance 99.6 1.3E-14 2.9E-19 125.6 14.1 120 113-234 28-167 (197)
20 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.1E-14 2.4E-19 136.5 14.4 123 114-236 112-253 (340)
21 COG2227 UbiG 2-polyprenyl-3-me 99.6 7.9E-16 1.7E-20 136.9 5.7 118 114-233 58-209 (243)
22 TIGR00477 tehB tellurite resis 99.6 2E-14 4.3E-19 124.3 13.7 121 114-236 29-168 (195)
23 PF08003 Methyltransf_9: Prote 99.6 2.1E-14 4.5E-19 132.0 12.4 124 115-239 115-267 (315)
24 TIGR03840 TMPT_Se_Te thiopurin 99.6 8.4E-14 1.8E-18 122.6 14.5 123 114-237 33-187 (213)
25 PRK11873 arsM arsenite S-adeno 99.6 5.7E-14 1.2E-18 126.5 13.6 124 113-236 75-227 (272)
26 PRK08317 hypothetical protein; 99.6 1.3E-13 2.7E-18 119.4 15.1 125 111-235 15-172 (241)
27 PRK12335 tellurite resistance 99.6 9.5E-14 2.1E-18 126.7 14.7 120 115-236 120-258 (287)
28 PRK00216 ubiE ubiquinone/menaq 99.5 2.1E-13 4.6E-18 118.6 15.9 140 113-252 49-239 (239)
29 PF07021 MetW: Methionine bios 99.5 4.6E-14 9.9E-19 122.2 11.5 122 112-236 10-164 (193)
30 TIGR02072 BioC biotin biosynth 99.5 4.9E-14 1.1E-18 122.3 11.4 116 115-230 34-168 (240)
31 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.8E-13 4E-18 117.8 14.9 137 114-251 38-223 (223)
32 PRK00107 gidB 16S rRNA methylt 99.5 4.9E-13 1.1E-17 115.6 16.9 107 111-233 41-163 (187)
33 PF13847 Methyltransf_31: Meth 99.5 5.3E-14 1.1E-18 116.1 9.0 89 115-204 3-111 (152)
34 smart00828 PKS_MT Methyltransf 99.5 1.7E-13 3.6E-18 119.5 12.6 120 118-238 2-143 (224)
35 KOG4300 Predicted methyltransf 99.5 4.2E-14 9.1E-19 123.6 8.3 88 117-204 78-183 (252)
36 TIGR00138 gidB 16S rRNA methyl 99.5 8.4E-13 1.8E-17 113.3 15.9 119 115-249 42-179 (181)
37 TIGR02081 metW methionine bios 99.5 2E-13 4.4E-18 117.4 12.1 129 113-244 11-174 (194)
38 PRK13255 thiopurine S-methyltr 99.5 4E-13 8.7E-18 118.7 14.0 122 113-237 35-190 (218)
39 PRK11188 rrmJ 23S rRNA methylt 99.5 3.2E-13 6.8E-18 118.4 12.7 94 111-204 47-166 (209)
40 PRK11088 rrmA 23S rRNA methylt 99.5 2.6E-13 5.6E-18 122.8 12.1 86 114-205 84-183 (272)
41 PF12847 Methyltransf_18: Meth 99.5 1.2E-13 2.7E-18 107.1 7.9 88 115-203 1-111 (112)
42 PF05148 Methyltransf_8: Hypot 99.5 2.2E-12 4.8E-17 113.1 15.9 130 114-255 71-201 (219)
43 PF02353 CMAS: Mycolic acid cy 99.5 5.1E-13 1.1E-17 121.8 12.3 127 103-233 50-211 (273)
44 PRK04266 fibrillarin; Provisio 99.5 1.9E-12 4.1E-17 115.0 15.6 137 111-251 68-225 (226)
45 TIGR00740 methyltransferase, p 99.5 1.1E-12 2.3E-17 116.2 13.2 124 113-238 51-226 (239)
46 PLN02336 phosphoethanolamine N 99.4 7.8E-13 1.7E-17 128.1 13.0 121 114-235 36-178 (475)
47 smart00138 MeTrc Methyltransfe 99.4 9.7E-13 2.1E-17 119.2 11.8 90 114-203 98-242 (264)
48 PRK06202 hypothetical protein; 99.4 6.3E-13 1.4E-17 117.2 10.1 120 114-236 59-219 (232)
49 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.3E-12 2.7E-17 116.8 11.2 124 113-238 54-229 (247)
50 PF08242 Methyltransf_12: Meth 99.4 3.2E-13 6.9E-18 103.3 6.0 80 120-199 1-99 (99)
51 TIGR03587 Pse_Me-ase pseudamin 99.4 2.4E-12 5.3E-17 112.4 12.1 119 113-234 41-180 (204)
52 TIGR01983 UbiG ubiquinone bios 99.4 8E-12 1.7E-16 108.7 14.6 121 115-236 45-200 (224)
53 PF03848 TehB: Tellurite resis 99.4 4E-12 8.7E-17 110.5 12.6 119 113-235 28-167 (192)
54 PRK11705 cyclopropane fatty ac 99.4 6.2E-12 1.4E-16 119.7 14.3 122 104-229 156-303 (383)
55 PF13649 Methyltransf_25: Meth 99.4 3.5E-13 7.6E-18 103.9 4.7 79 119-197 1-101 (101)
56 KOG1270 Methyltransferases [Co 99.4 2.9E-13 6.3E-18 121.9 4.8 112 116-232 90-242 (282)
57 PRK05134 bifunctional 3-demeth 99.4 8.9E-12 1.9E-16 109.4 13.3 124 113-237 46-203 (233)
58 PRK00121 trmB tRNA (guanine-N( 99.4 1.9E-12 4E-17 112.6 8.8 107 115-232 40-174 (202)
59 TIGR00537 hemK_rel_arch HemK-r 99.4 1.9E-11 4.2E-16 103.6 14.5 121 115-249 19-176 (179)
60 PRK06922 hypothetical protein; 99.4 1.7E-12 3.7E-17 129.8 8.5 90 114-203 417-537 (677)
61 PTZ00146 fibrillarin; Provisio 99.3 1.8E-11 3.8E-16 112.6 12.6 138 112-252 129-287 (293)
62 TIGR02469 CbiT precorrin-6Y C5 99.3 2.1E-11 4.6E-16 95.5 11.2 89 112-203 16-122 (124)
63 TIGR02021 BchM-ChlM magnesium 99.3 4.9E-11 1.1E-15 104.1 14.6 119 113-235 53-202 (219)
64 KOG3045 Predicted RNA methylas 99.3 3.9E-11 8.4E-16 108.2 14.1 126 114-253 179-305 (325)
65 PLN03075 nicotianamine synthas 99.3 6.1E-11 1.3E-15 109.3 15.5 133 115-254 123-277 (296)
66 PRK14967 putative methyltransf 99.3 5.6E-11 1.2E-15 104.5 13.1 91 113-204 34-160 (223)
67 COG2230 Cfa Cyclopropane fatty 99.3 6.4E-11 1.4E-15 108.4 12.9 131 104-235 61-219 (283)
68 TIGR00438 rrmJ cell division p 99.3 8.5E-11 1.8E-15 100.6 13.0 93 111-203 28-146 (188)
69 PRK13944 protein-L-isoaspartat 99.3 4.2E-11 9.2E-16 104.3 11.1 87 112-204 69-174 (205)
70 PF13659 Methyltransf_26: Meth 99.3 8.6E-12 1.9E-16 97.6 5.8 89 116-204 1-116 (117)
71 PRK00517 prmA ribosomal protei 99.3 2.9E-11 6.2E-16 108.3 9.9 125 113-251 117-249 (250)
72 TIGR01177 conserved hypothetic 99.2 6.5E-11 1.4E-15 110.1 12.2 107 111-232 178-309 (329)
73 TIGR02716 C20_methyl_CrtF C-20 99.2 2.3E-10 5E-15 105.0 14.8 129 108-238 142-305 (306)
74 PRK13942 protein-L-isoaspartat 99.2 8.8E-11 1.9E-15 102.9 11.3 93 106-204 67-177 (212)
75 TIGR00091 tRNA (guanine-N(7)-) 99.2 3.5E-11 7.6E-16 103.8 8.1 90 115-204 16-133 (194)
76 KOG1271 Methyltransferases [Ge 99.2 1.9E-10 4.2E-15 99.1 12.3 124 116-251 68-226 (227)
77 PRK08287 cobalt-precorrin-6Y C 99.2 3.3E-10 7.1E-15 96.7 13.5 106 113-233 29-150 (187)
78 PRK13256 thiopurine S-methyltr 99.2 1.4E-10 2.9E-15 103.3 11.2 119 113-234 41-194 (226)
79 PRK07580 Mg-protoporphyrin IX 99.2 8.5E-10 1.8E-14 96.1 16.1 117 113-234 61-209 (230)
80 COG4106 Tam Trans-aconitate me 99.2 5.8E-11 1.3E-15 104.7 8.2 102 104-206 19-132 (257)
81 PRK00377 cbiT cobalt-precorrin 99.2 3E-10 6.5E-15 98.1 12.4 108 112-232 37-163 (198)
82 PF05401 NodS: Nodulation prot 99.2 6.1E-10 1.3E-14 97.0 13.8 171 69-254 6-199 (201)
83 PRK14968 putative methyltransf 99.2 7.3E-10 1.6E-14 93.2 13.6 108 114-234 22-168 (188)
84 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.6E-10 3.5E-15 110.1 10.5 90 115-204 122-236 (390)
85 COG2521 Predicted archaeal met 99.2 3.5E-10 7.5E-15 100.8 11.6 124 113-240 132-278 (287)
86 TIGR00080 pimt protein-L-isoas 99.1 3.5E-10 7.6E-15 98.9 11.3 87 112-204 74-178 (215)
87 PRK09328 N5-glutamine S-adenos 99.1 1.4E-09 2.9E-14 97.6 15.3 125 113-250 106-274 (275)
88 TIGR03534 RF_mod_PrmC protein- 99.1 9.5E-10 2.1E-14 96.9 13.9 111 115-238 87-240 (251)
89 PF05175 MTS: Methyltransferas 99.1 9E-10 2E-14 93.1 12.9 108 115-233 31-160 (170)
90 TIGR00406 prmA ribosomal prote 99.1 2.1E-10 4.5E-15 105.0 9.7 103 113-230 157-275 (288)
91 PF03141 Methyltransf_29: Puta 99.1 8.3E-11 1.8E-15 114.1 6.3 126 118-254 120-263 (506)
92 PLN02585 magnesium protoporphy 99.1 1.1E-09 2.3E-14 102.0 13.5 115 115-234 144-294 (315)
93 TIGR00536 hemK_fam HemK family 99.1 2.3E-09 4.9E-14 97.9 15.3 122 117-251 116-282 (284)
94 PF05724 TPMT: Thiopurine S-me 99.1 3.4E-10 7.5E-15 100.1 9.1 126 104-230 26-182 (218)
95 PLN02232 ubiquinone biosynthes 99.1 1.5E-10 3.2E-15 97.2 6.2 88 151-238 28-146 (160)
96 COG2264 PrmA Ribosomal protein 99.1 1E-09 2.2E-14 101.3 11.6 125 113-251 160-299 (300)
97 PRK09489 rsmC 16S ribosomal RN 99.1 1.6E-09 3.5E-14 101.8 13.1 87 116-204 197-304 (342)
98 PF06325 PrmA: Ribosomal prote 99.1 2.4E-09 5.2E-14 98.8 13.7 123 113-252 159-295 (295)
99 PRK00312 pcm protein-L-isoaspa 99.0 2E-09 4.4E-14 93.6 11.1 86 112-204 75-176 (212)
100 PRK15001 SAM-dependent 23S rib 99.0 2.5E-09 5.4E-14 101.8 12.4 87 116-203 229-340 (378)
101 cd02440 AdoMet_MTases S-adenos 99.0 1.6E-09 3.4E-14 79.5 8.3 85 118-202 1-103 (107)
102 KOG3010 Methyltransferase [Gen 99.0 7.1E-10 1.5E-14 99.1 6.4 85 118-203 36-137 (261)
103 PRK14966 unknown domain/N5-glu 99.0 1.3E-08 2.8E-13 98.0 15.4 127 113-251 249-418 (423)
104 PF11968 DUF3321: Putative met 99.0 1.5E-08 3.2E-13 89.5 14.1 131 117-254 53-195 (219)
105 KOG1541 Predicted protein carb 99.0 2.8E-09 6E-14 94.4 9.1 88 116-204 51-161 (270)
106 TIGR03533 L3_gln_methyl protei 99.0 1.1E-08 2.3E-13 93.8 12.9 105 115-233 121-268 (284)
107 TIGR03438 probable methyltrans 99.0 7.7E-09 1.7E-13 95.3 12.0 94 113-206 61-180 (301)
108 PRK07402 precorrin-6B methylas 98.9 1E-08 2.3E-13 88.2 11.2 90 112-204 37-143 (196)
109 smart00650 rADc Ribosomal RNA 98.9 4.5E-08 9.9E-13 82.4 14.4 89 112-203 10-113 (169)
110 KOG1269 SAM-dependent methyltr 98.9 1.3E-09 2.7E-14 103.3 5.2 91 112-202 107-214 (364)
111 PHA03411 putative methyltransf 98.9 1.1E-08 2.4E-13 93.5 10.8 113 115-233 64-208 (279)
112 COG4123 Predicted O-methyltran 98.9 2.9E-08 6.3E-13 89.5 13.3 129 114-254 43-215 (248)
113 PF06080 DUF938: Protein of un 98.9 3.1E-08 6.8E-13 86.8 13.1 138 113-251 22-204 (204)
114 PRK11805 N5-glutamine S-adenos 98.9 4.8E-08 1E-12 90.5 14.6 104 117-234 135-281 (307)
115 PRK13943 protein-L-isoaspartat 98.9 9.1E-09 2E-13 96.1 9.8 86 112-203 77-180 (322)
116 PF05219 DREV: DREV methyltran 98.9 6.9E-09 1.5E-13 93.8 8.5 88 115-203 94-188 (265)
117 PRK10901 16S rRNA methyltransf 98.9 1.9E-08 4.1E-13 97.0 11.9 91 113-203 242-372 (427)
118 PRK00811 spermidine synthase; 98.9 9.2E-09 2E-13 94.1 8.8 90 114-203 75-191 (283)
119 KOG1975 mRNA cap methyltransfe 98.8 1.7E-08 3.6E-13 93.7 10.0 95 112-206 114-240 (389)
120 PRK01544 bifunctional N5-gluta 98.8 3.9E-08 8.4E-13 96.9 12.8 105 116-233 139-287 (506)
121 TIGR00563 rsmB ribosomal RNA s 98.8 3.1E-08 6.7E-13 95.4 11.6 91 113-203 236-368 (426)
122 COG4976 Predicted methyltransf 98.8 2.5E-09 5.3E-14 95.3 3.6 118 115-233 125-259 (287)
123 PRK14901 16S rRNA methyltransf 98.8 2.6E-08 5.6E-13 96.2 10.8 91 113-203 250-384 (434)
124 TIGR03704 PrmC_rel_meth putati 98.8 1.6E-07 3.6E-12 84.5 14.8 106 116-233 87-234 (251)
125 PHA03412 putative methyltransf 98.8 4.2E-08 9E-13 88.0 10.7 115 115-233 49-196 (241)
126 PRK04457 spermidine synthase; 98.8 1.9E-08 4.2E-13 91.1 8.1 90 114-203 65-177 (262)
127 COG2519 GCD14 tRNA(1-methylade 98.8 5E-08 1.1E-12 87.9 10.5 114 109-238 88-219 (256)
128 PF03291 Pox_MCEL: mRNA cappin 98.8 4E-08 8.7E-13 92.1 10.0 91 115-205 62-188 (331)
129 KOG2361 Predicted methyltransf 98.8 4.6E-08 1E-12 87.6 9.8 120 117-236 73-234 (264)
130 COG2890 HemK Methylase of poly 98.8 8.8E-08 1.9E-12 87.8 11.6 121 118-252 113-277 (280)
131 PF01135 PCMT: Protein-L-isoas 98.7 3E-08 6.5E-13 87.3 8.1 93 106-204 63-173 (209)
132 PF07942 N2227: N2227-like pro 98.7 2.3E-07 5.1E-12 84.7 14.0 145 86-236 23-239 (270)
133 PRK14904 16S rRNA methyltransf 98.7 7.1E-08 1.5E-12 93.5 10.2 90 113-203 248-377 (445)
134 PRK14903 16S rRNA methyltransf 98.7 5.9E-08 1.3E-12 93.9 8.9 92 112-203 234-366 (431)
135 COG2242 CobL Precorrin-6B meth 98.7 4.8E-07 1E-11 78.3 13.3 105 112-232 31-153 (187)
136 TIGR00446 nop2p NOL1/NOP2/sun 98.7 7.5E-08 1.6E-12 87.2 8.5 91 113-203 69-199 (264)
137 KOG1331 Predicted methyltransf 98.7 3.6E-08 7.8E-13 90.0 6.1 88 113-203 43-143 (293)
138 PRK14902 16S rRNA methyltransf 98.6 1.3E-07 2.8E-12 91.5 10.0 89 113-202 248-378 (444)
139 COG2518 Pcm Protein-L-isoaspar 98.6 2.5E-07 5.4E-12 81.5 10.3 91 107-204 64-170 (209)
140 KOG2940 Predicted methyltransf 98.6 3.2E-08 7E-13 88.3 4.6 88 116-203 73-174 (325)
141 COG2813 RsmC 16S RNA G1207 met 98.6 6.2E-07 1.3E-11 82.8 12.9 107 115-233 158-286 (300)
142 PRK13168 rumA 23S rRNA m(5)U19 98.6 1E-06 2.2E-11 85.3 14.3 135 102-251 284-442 (443)
143 PF08704 GCD14: tRNA methyltra 98.6 5.5E-07 1.2E-11 81.3 11.5 114 110-238 35-170 (247)
144 PF02390 Methyltransf_4: Putat 98.6 2.1E-07 4.5E-12 81.0 7.7 88 117-204 19-134 (195)
145 PRK01581 speE spermidine synth 98.6 2E-07 4.3E-12 88.4 8.0 91 113-203 148-268 (374)
146 PRK03612 spermidine synthase; 98.6 3.6E-07 7.8E-12 90.4 10.2 112 114-232 296-437 (521)
147 PLN02366 spermidine synthase 98.5 5.2E-07 1.1E-11 83.9 9.4 91 113-203 89-206 (308)
148 TIGR00417 speE spermidine synt 98.5 6.2E-07 1.3E-11 81.4 9.5 90 114-203 71-186 (270)
149 COG1041 Predicted DNA modifica 98.5 8.1E-07 1.8E-11 83.4 9.8 97 107-204 189-311 (347)
150 PRK10611 chemotaxis methyltran 98.5 7.6E-07 1.6E-11 82.0 9.2 87 116-202 116-261 (287)
151 COG0500 SmtA SAM-dependent met 98.4 1.7E-06 3.7E-11 64.8 9.3 85 119-204 52-156 (257)
152 PF00891 Methyltransf_2: O-met 98.4 3.6E-06 7.9E-11 74.4 12.5 94 107-203 92-199 (241)
153 PLN02781 Probable caffeoyl-CoA 98.4 3.7E-07 7.9E-12 81.4 5.9 87 114-202 67-177 (234)
154 PRK03522 rumB 23S rRNA methylu 98.4 3.5E-06 7.5E-11 78.1 12.6 114 115-243 173-302 (315)
155 KOG2352 Predicted spermine/spe 98.4 4.5E-07 9.7E-12 88.1 6.5 90 113-202 45-160 (482)
156 PRK11783 rlmL 23S rRNA m(2)G24 98.4 4.3E-07 9.4E-12 92.8 6.5 89 115-203 538-656 (702)
157 TIGR00478 tly hemolysin TlyA f 98.4 2.7E-06 5.9E-11 76.0 10.2 82 114-203 74-171 (228)
158 KOG1499 Protein arginine N-met 98.4 7.9E-07 1.7E-11 83.3 6.9 87 112-200 57-164 (346)
159 TIGR00479 rumA 23S rRNA (uraci 98.4 4.8E-06 1E-10 80.2 12.2 99 101-202 278-395 (431)
160 PRK15128 23S rRNA m(5)C1962 me 98.3 1.5E-06 3.3E-11 83.3 8.4 90 114-203 219-339 (396)
161 PRK10909 rsmD 16S rRNA m(2)G96 98.3 3.7E-06 8.1E-11 73.5 10.1 89 115-204 53-160 (199)
162 PRK00274 ksgA 16S ribosomal RN 98.3 1.5E-06 3.2E-11 79.0 7.6 69 105-174 32-112 (272)
163 PLN02672 methionine S-methyltr 98.3 3.3E-06 7.2E-11 89.5 11.2 108 116-236 119-300 (1082)
164 PF05891 Methyltransf_PK: AdoM 98.3 4.6E-06 9.9E-11 73.9 10.0 124 115-238 55-200 (218)
165 COG0220 Predicted S-adenosylme 98.3 2.2E-06 4.8E-11 76.5 7.4 88 117-204 50-165 (227)
166 PRK14896 ksgA 16S ribosomal RN 98.3 3.2E-06 6.8E-11 76.3 8.3 66 106-174 20-98 (258)
167 KOG2899 Predicted methyltransf 98.3 3.5E-06 7.6E-11 75.8 8.1 139 115-254 58-279 (288)
168 PF01739 CheR: CheR methyltran 98.2 5E-06 1.1E-10 72.6 8.3 89 115-203 31-175 (196)
169 TIGR00755 ksgA dimethyladenosi 98.2 8.6E-06 1.9E-10 73.0 9.3 67 105-174 19-101 (253)
170 TIGR02085 meth_trns_rumB 23S r 98.1 3E-05 6.4E-10 73.7 12.5 112 115-242 233-361 (374)
171 PF05185 PRMT5: PRMT5 arginine 98.1 1.5E-05 3.3E-10 77.7 10.3 83 116-200 187-294 (448)
172 PF01728 FtsJ: FtsJ-like methy 98.1 2.9E-06 6.4E-11 71.8 4.6 89 116-204 24-140 (181)
173 PLN02476 O-methyltransferase 98.1 4.3E-05 9.4E-10 70.2 12.4 88 113-202 116-227 (278)
174 PF03269 DUF268: Caenorhabditi 98.1 2.3E-05 4.9E-10 66.6 9.6 120 116-236 2-144 (177)
175 PF02527 GidB: rRNA small subu 98.0 5.2E-05 1.1E-09 65.6 10.0 97 103-203 35-148 (184)
176 COG0293 FtsJ 23S rRNA methylas 98.0 8E-05 1.7E-09 65.5 11.1 93 111-203 41-159 (205)
177 PF01170 UPF0020: Putative RNA 98.0 3.5E-05 7.5E-10 66.1 8.6 91 111-202 24-149 (179)
178 PRK11727 23S rRNA mA1618 methy 98.0 8.1E-06 1.7E-10 76.4 4.9 125 115-239 114-292 (321)
179 PRK01544 bifunctional N5-gluta 98.0 2E-05 4.3E-10 77.9 7.5 90 115-204 347-463 (506)
180 KOG1661 Protein-L-isoaspartate 98.0 3.3E-05 7.1E-10 68.2 8.0 98 99-203 68-193 (237)
181 PRK04148 hypothetical protein; 97.9 3.3E-05 7.2E-10 63.7 7.4 58 115-173 16-83 (134)
182 PTZ00338 dimethyladenosine tra 97.9 3.5E-05 7.6E-10 71.2 7.7 68 104-174 25-108 (294)
183 PLN02823 spermine synthase 97.9 4.6E-05 1E-09 71.7 8.6 90 114-203 102-220 (336)
184 KOG1500 Protein arginine N-met 97.9 5.1E-05 1.1E-09 71.4 8.0 88 115-203 177-282 (517)
185 PF01596 Methyltransf_3: O-met 97.9 5E-05 1.1E-09 66.7 7.6 86 115-202 45-154 (205)
186 TIGR00095 RNA methyltransferas 97.9 9.4E-05 2E-09 64.0 9.1 89 115-204 49-160 (189)
187 COG2263 Predicted RNA methylas 97.8 7.2E-05 1.6E-09 65.1 8.2 58 114-174 44-115 (198)
188 COG4122 Predicted O-methyltran 97.8 5.5E-05 1.2E-09 67.2 7.6 87 114-202 58-165 (219)
189 KOG2904 Predicted methyltransf 97.8 0.00018 3.8E-09 66.1 11.0 90 115-204 148-286 (328)
190 COG1352 CheR Methylase of chem 97.8 0.00018 3.9E-09 65.8 10.8 89 115-203 96-241 (268)
191 PF10294 Methyltransf_16: Puta 97.8 0.00013 2.9E-09 62.0 9.2 92 113-204 43-157 (173)
192 PF03141 Methyltransf_29: Puta 97.8 0.00021 4.5E-09 70.1 10.6 142 90-251 343-506 (506)
193 PRK11760 putative 23S rRNA C24 97.7 0.0002 4.3E-09 67.6 10.1 81 112-196 208-296 (357)
194 PF08123 DOT1: Histone methyla 97.7 3.8E-05 8.2E-10 67.5 4.9 95 108-202 35-157 (205)
195 COG4627 Uncharacterized protei 97.7 1.5E-05 3.1E-10 67.5 1.6 79 119-205 6-88 (185)
196 PRK11933 yebU rRNA (cytosine-C 97.7 0.00017 3.6E-09 70.9 8.9 90 113-202 111-241 (470)
197 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00013 2.9E-09 69.7 7.3 84 116-202 58-157 (382)
198 PF02384 N6_Mtase: N-6 DNA Met 97.6 0.00024 5.1E-09 65.2 8.3 137 112-254 43-235 (311)
199 KOG3987 Uncharacterized conser 97.6 4E-05 8.7E-10 67.8 2.3 86 116-202 113-206 (288)
200 PF02475 Met_10: Met-10+ like- 97.5 0.00025 5.5E-09 62.2 6.8 85 112-200 98-199 (200)
201 KOG2798 Putative trehalase [Ca 97.5 0.00058 1.3E-08 63.7 8.9 150 86-236 117-334 (369)
202 PF12147 Methyltransf_20: Puta 97.5 0.0042 9.1E-08 57.5 14.4 134 115-248 135-308 (311)
203 COG0030 KsgA Dimethyladenosine 97.5 0.00046 1E-08 62.8 7.8 71 103-174 18-102 (259)
204 COG3963 Phospholipid N-methylt 97.4 0.0013 2.9E-08 56.4 9.9 91 113-203 46-156 (194)
205 PRK00536 speE spermidine synth 97.4 0.00027 5.7E-09 64.5 5.4 82 114-203 71-171 (262)
206 TIGR02143 trmA_only tRNA (urac 97.4 0.0018 3.9E-08 61.2 11.0 119 117-251 199-352 (353)
207 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.00042 9.1E-09 63.0 6.5 117 115-234 56-234 (256)
208 PLN02589 caffeoyl-CoA O-methyl 97.4 0.00038 8.2E-09 62.9 6.2 85 115-201 79-188 (247)
209 KOG1709 Guanidinoacetate methy 97.3 0.00067 1.5E-08 60.5 7.3 87 114-202 100-205 (271)
210 PRK05031 tRNA (uracil-5-)-meth 97.3 0.0024 5.2E-08 60.6 11.6 134 101-251 193-361 (362)
211 COG0421 SpeE Spermidine syntha 97.3 0.001 2.2E-08 61.3 8.1 87 116-202 77-189 (282)
212 KOG0820 Ribosomal RNA adenine 97.3 0.0015 3.2E-08 60.0 8.7 69 103-174 46-130 (315)
213 KOG3420 Predicted RNA methylas 97.3 0.00023 5E-09 59.9 3.2 61 114-174 47-121 (185)
214 PF03602 Cons_hypoth95: Conser 97.2 0.00032 6.9E-09 60.5 4.1 88 115-204 42-154 (183)
215 COG1092 Predicted SAM-dependen 97.2 0.001 2.2E-08 64.0 7.6 89 115-203 217-336 (393)
216 COG0357 GidB Predicted S-adeno 97.2 0.0045 9.7E-08 55.0 11.0 84 116-202 68-167 (215)
217 COG1189 Predicted rRNA methyla 97.1 0.0049 1.1E-07 55.5 10.3 89 112-204 76-179 (245)
218 PF01564 Spermine_synth: Sperm 97.0 0.0013 2.8E-08 59.2 5.8 91 114-204 75-192 (246)
219 PRK00050 16S rRNA m(4)C1402 me 96.9 0.0012 2.7E-08 61.2 5.2 43 106-148 10-54 (296)
220 KOG3178 Hydroxyindole-O-methyl 96.9 0.02 4.3E-07 54.1 13.1 85 115-204 177-276 (342)
221 COG0742 N6-adenine-specific me 96.9 0.0058 1.2E-07 53.2 8.8 91 114-204 42-155 (187)
222 PRK11783 rlmL 23S rRNA m(2)G24 96.9 0.0046 9.9E-08 63.6 9.6 91 114-204 189-348 (702)
223 TIGR02987 met_A_Alw26 type II 96.9 0.0029 6.2E-08 62.6 7.4 34 115-148 31-73 (524)
224 KOG2915 tRNA(1-methyladenosine 96.9 0.013 2.9E-07 53.9 11.0 113 112-238 102-234 (314)
225 KOG3191 Predicted N6-DNA-methy 96.8 0.018 3.8E-07 50.2 11.1 106 115-232 43-186 (209)
226 COG0144 Sun tRNA and rRNA cyto 96.8 0.0094 2E-07 56.5 9.9 91 112-202 153-287 (355)
227 PF00398 RrnaAD: Ribosomal RNA 96.8 0.0049 1.1E-07 55.7 7.7 89 104-195 19-123 (262)
228 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.0025 5.4E-08 60.9 6.0 84 116-202 45-146 (374)
229 KOG1663 O-methyltransferase [S 96.8 0.013 2.9E-07 52.5 10.1 85 115-202 73-182 (237)
230 PF13679 Methyltransf_32: Meth 96.7 0.0069 1.5E-07 49.6 7.6 50 99-148 8-63 (141)
231 TIGR03439 methyl_EasF probable 96.7 0.069 1.5E-06 50.1 15.0 94 113-206 74-200 (319)
232 COG2520 Predicted methyltransf 96.7 0.0069 1.5E-07 57.3 8.1 89 112-203 185-289 (341)
233 PF04672 Methyltransf_19: S-ad 96.7 0.027 5.9E-07 51.6 11.6 115 117-232 70-231 (267)
234 PF09243 Rsm22: Mitochondrial 96.6 0.013 2.8E-07 53.6 9.0 100 102-205 20-141 (274)
235 COG3897 Predicted methyltransf 96.6 0.013 2.9E-07 51.5 8.4 86 114-204 78-179 (218)
236 PF01269 Fibrillarin: Fibrilla 96.5 0.011 2.4E-07 52.8 7.5 91 112-204 70-179 (229)
237 PF10672 Methyltrans_SAM: S-ad 96.4 0.0034 7.3E-08 58.0 4.2 89 115-203 123-238 (286)
238 KOG4589 Cell division protein 96.1 0.072 1.6E-06 46.8 10.5 91 111-203 65-184 (232)
239 PF05958 tRNA_U5-meth_tr: tRNA 96.1 0.052 1.1E-06 51.3 10.3 46 101-148 183-228 (352)
240 COG2265 TrmA SAM-dependent met 96.0 0.062 1.3E-06 52.4 10.5 99 102-203 280-396 (432)
241 PF03059 NAS: Nicotianamine sy 95.9 0.16 3.4E-06 46.8 12.5 87 116-202 121-229 (276)
242 COG4798 Predicted methyltransf 95.8 0.03 6.6E-07 49.4 6.8 91 112-203 45-166 (238)
243 PF13578 Methyltransf_24: Meth 95.7 0.0025 5.4E-08 49.0 -0.1 83 120-202 1-104 (106)
244 COG4076 Predicted RNA methylas 95.7 0.017 3.7E-07 50.7 5.0 82 117-201 34-133 (252)
245 PF09445 Methyltransf_15: RNA 95.4 0.009 1.9E-07 50.9 2.0 56 118-174 2-76 (163)
246 PRK13699 putative methylase; P 95.4 0.045 9.8E-07 48.7 6.5 68 154-233 5-90 (227)
247 PF07757 AdoMet_MTase: Predict 95.3 0.032 7E-07 44.5 4.8 32 115-147 58-89 (112)
248 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.1 0.044 9.5E-07 50.3 5.9 91 113-203 83-219 (283)
249 PF04445 SAM_MT: Putative SAM- 95.0 0.018 4E-07 51.7 2.9 68 110-178 68-163 (234)
250 PRK11524 putative methyltransf 94.9 0.027 5.9E-07 51.5 3.7 52 152-203 10-80 (284)
251 PF03492 Methyltransf_7: SAM d 94.8 0.14 3.1E-06 48.1 8.4 66 115-180 16-121 (334)
252 KOG2920 Predicted methyltransf 94.8 0.037 8E-07 51.0 4.3 36 112-147 113-148 (282)
253 COG5459 Predicted rRNA methyla 94.8 0.075 1.6E-06 50.8 6.3 105 100-205 95-227 (484)
254 cd08283 FDH_like_1 Glutathione 94.7 0.25 5.3E-06 46.6 9.7 92 111-202 180-305 (386)
255 TIGR01444 fkbM_fam methyltrans 94.5 0.04 8.6E-07 44.2 3.5 32 118-149 1-33 (143)
256 PLN02668 indole-3-acetate carb 94.5 0.14 3E-06 49.4 7.6 25 156-180 151-176 (386)
257 KOG1099 SAM-dependent methyltr 94.1 0.15 3.3E-06 46.1 6.6 88 115-202 41-162 (294)
258 PRK10742 putative methyltransf 93.9 0.15 3.2E-06 46.4 6.1 39 109-148 80-120 (250)
259 COG1889 NOP1 Fibrillarin-like 93.4 0.52 1.1E-05 41.9 8.4 90 112-203 73-180 (231)
260 KOG2187 tRNA uracil-5-methyltr 93.2 0.11 2.3E-06 51.6 4.3 39 110-149 378-416 (534)
261 COG1064 AdhP Zn-dependent alco 92.9 0.47 1E-05 45.0 8.1 83 112-202 163-258 (339)
262 cd08254 hydroxyacyl_CoA_DH 6-h 92.9 0.62 1.3E-05 42.0 8.7 86 111-202 161-262 (338)
263 KOG3115 Methyltransferase-like 92.7 0.25 5.4E-06 44.0 5.4 31 116-146 61-92 (249)
264 PF04989 CmcI: Cephalosporin h 92.6 1.6 3.4E-05 38.7 10.4 88 115-202 32-146 (206)
265 PF04816 DUF633: Family of unk 91.8 0.73 1.6E-05 40.5 7.5 100 119-233 1-118 (205)
266 cd00315 Cyt_C5_DNA_methylase C 91.6 0.34 7.4E-06 44.1 5.3 122 118-244 2-151 (275)
267 TIGR00006 S-adenosyl-methyltra 91.4 0.37 8E-06 45.0 5.3 44 105-148 10-54 (305)
268 KOG2198 tRNA cytosine-5-methyl 91.3 1.4 3E-05 42.2 9.1 91 112-202 152-295 (375)
269 KOG0822 Protein kinase inhibit 91.2 0.8 1.7E-05 45.9 7.7 99 102-201 351-476 (649)
270 COG0286 HsdM Type I restrictio 91.2 13 0.00028 36.9 16.3 92 114-205 185-328 (489)
271 PF06859 Bin3: Bicoid-interact 90.9 0.095 2.1E-06 41.9 0.8 36 167-202 1-43 (110)
272 COG4262 Predicted spermidine s 90.8 1.4 3E-05 42.6 8.6 92 113-204 287-408 (508)
273 PRK01747 mnmC bifunctional tRN 90.3 0.87 1.9E-05 46.4 7.4 63 166-244 165-231 (662)
274 PF11312 DUF3115: Protein of u 90.3 1.2 2.5E-05 41.9 7.5 121 84-204 42-243 (315)
275 PF05430 Methyltransf_30: S-ad 90.3 0.75 1.6E-05 37.3 5.6 67 166-248 49-119 (124)
276 KOG1122 tRNA and rRNA cytosine 90.0 1.1 2.4E-05 43.7 7.3 88 114-202 240-370 (460)
277 COG0116 Predicted N6-adenine-s 89.4 1.6 3.4E-05 42.1 7.9 99 106-204 182-345 (381)
278 PRK09880 L-idonate 5-dehydroge 89.2 1.4 2.9E-05 40.7 7.2 84 114-202 168-265 (343)
279 PF05971 Methyltransf_10: Prot 88.7 1.6 3.5E-05 40.7 7.2 32 116-148 103-136 (299)
280 PRK09424 pntA NAD(P) transhydr 87.5 1 2.3E-05 44.9 5.5 88 114-202 163-284 (509)
281 KOG1501 Arginine N-methyltrans 87.1 0.87 1.9E-05 44.9 4.5 29 118-146 69-97 (636)
282 COG1063 Tdh Threonine dehydrog 86.6 1.5 3.3E-05 41.2 5.9 84 114-202 167-268 (350)
283 cd05188 MDR Medium chain reduc 86.4 4.3 9.3E-05 34.8 8.2 87 111-203 130-232 (271)
284 KOG2671 Putative RNA methylase 86.4 0.63 1.4E-05 44.4 3.1 75 111-193 204-303 (421)
285 PF10354 DUF2431: Domain of un 86.3 6.3 0.00014 33.4 8.9 67 162-238 70-151 (166)
286 TIGR03451 mycoS_dep_FDH mycoth 86.2 4 8.7E-05 37.8 8.5 86 110-202 171-275 (358)
287 TIGR01202 bchC 2-desacetyl-2-h 86.1 1.9 4.1E-05 39.3 6.1 81 115-202 144-230 (308)
288 PHA01634 hypothetical protein 86.1 1 2.2E-05 37.4 3.8 34 115-148 28-61 (156)
289 cd08237 ribitol-5-phosphate_DH 85.9 2.1 4.5E-05 39.6 6.3 88 113-202 161-255 (341)
290 KOG2793 Putative N2,N2-dimethy 85.4 2.9 6.3E-05 38.0 6.8 89 116-204 87-200 (248)
291 KOG1596 Fibrillarin and relate 85.2 4.6 9.9E-05 37.1 7.8 91 111-203 152-261 (317)
292 cd08232 idonate-5-DH L-idonate 84.9 6.1 0.00013 35.8 8.8 83 115-202 165-261 (339)
293 cd08234 threonine_DH_like L-th 84.6 5.7 0.00012 35.8 8.4 87 111-202 155-256 (334)
294 PF07091 FmrO: Ribosomal RNA m 84.1 1.1 2.3E-05 40.9 3.4 72 100-174 92-178 (251)
295 PF01555 N6_N4_Mtase: DNA meth 82.4 2.4 5.2E-05 35.9 4.8 46 101-148 178-223 (231)
296 PF05206 TRM13: Methyltransfer 81.0 5.3 0.00011 36.4 6.7 46 102-147 5-56 (259)
297 cd05278 FDH_like Formaldehyde 80.9 4.2 9.1E-05 36.9 6.1 86 112-202 164-266 (347)
298 cd08281 liver_ADH_like1 Zinc-d 80.6 5.8 0.00013 37.0 7.1 87 111-202 187-289 (371)
299 cd08230 glucose_DH Glucose deh 80.3 3 6.4E-05 38.6 5.0 82 113-202 170-268 (355)
300 COG2933 Predicted SAM-dependen 79.3 7 0.00015 36.3 6.8 80 113-196 209-296 (358)
301 KOG4058 Uncharacterized conser 79.2 1.2 2.5E-05 38.0 1.7 60 114-173 71-146 (199)
302 PF01555 N6_N4_Mtase: DNA meth 78.0 1.5 3.2E-05 37.2 2.0 22 183-204 36-57 (231)
303 cd05285 sorbitol_DH Sorbitol d 76.9 19 0.00041 32.8 9.2 88 110-202 157-264 (343)
304 cd08231 MDR_TM0436_like Hypoth 76.4 16 0.00035 33.6 8.6 84 112-202 174-279 (361)
305 PF11899 DUF3419: Protein of u 75.9 3.3 7.1E-05 39.9 3.9 41 164-204 292-335 (380)
306 TIGR00561 pntA NAD(P) transhyd 75.9 6.3 0.00014 39.4 6.0 87 115-202 163-283 (511)
307 PLN03154 putative allyl alcoho 74.4 12 0.00025 34.8 7.2 87 109-202 152-257 (348)
308 PRK13699 putative methylase; P 73.9 8.1 0.00018 34.3 5.7 46 101-148 150-195 (227)
309 COG2384 Predicted SAM-dependen 73.6 5.9 0.00013 35.5 4.6 61 113-174 14-92 (226)
310 KOG1098 Putative SAM-dependent 73.0 5.1 0.00011 41.1 4.5 39 111-149 40-80 (780)
311 PRK11524 putative methyltransf 72.9 8.8 0.00019 35.0 5.8 46 101-148 195-240 (284)
312 PLN02740 Alcohol dehydrogenase 72.3 22 0.00047 33.3 8.5 87 111-202 194-299 (381)
313 KOG2730 Methylase [General fun 72.0 3.1 6.6E-05 37.6 2.5 33 115-148 94-126 (263)
314 cd08278 benzyl_alcohol_DH Benz 71.8 15 0.00033 34.1 7.3 87 111-202 182-284 (365)
315 KOG3201 Uncharacterized conser 71.6 8 0.00017 33.5 4.8 40 164-203 100-140 (201)
316 cd08293 PTGR2 Prostaglandin re 71.4 10 0.00023 34.4 6.0 85 112-202 149-253 (345)
317 cd08285 NADP_ADH NADP(H)-depen 71.2 20 0.00042 32.8 7.8 87 111-202 162-265 (351)
318 TIGR03366 HpnZ_proposed putati 70.8 14 0.0003 32.9 6.6 84 114-202 119-217 (280)
319 PLN02827 Alcohol dehydrogenase 70.6 14 0.0003 34.8 6.8 85 111-202 189-294 (378)
320 cd00401 AdoHcyase S-adenosyl-L 70.2 15 0.00032 35.8 7.0 86 112-202 198-288 (413)
321 KOG1562 Spermidine synthase [A 70.1 9.4 0.0002 35.9 5.3 91 112-202 118-235 (337)
322 cd08236 sugar_DH NAD(P)-depend 69.7 9.8 0.00021 34.5 5.4 86 112-202 156-257 (343)
323 cd08245 CAD Cinnamyl alcohol d 69.3 61 0.0013 29.0 10.5 85 112-202 159-255 (330)
324 cd08277 liver_alcohol_DH_like 68.7 32 0.00069 31.9 8.7 87 111-202 180-285 (365)
325 PLN02586 probable cinnamyl alc 68.7 30 0.00066 32.2 8.6 85 112-202 180-277 (360)
326 cd08295 double_bond_reductase_ 68.3 20 0.00044 32.6 7.2 85 111-202 147-250 (338)
327 cd08255 2-desacetyl-2-hydroxye 68.3 21 0.00046 31.2 7.1 87 111-202 93-189 (277)
328 cd08279 Zn_ADH_class_III Class 68.2 24 0.00052 32.6 7.8 87 111-202 178-281 (363)
329 cd08294 leukotriene_B4_DH_like 68.1 37 0.00079 30.4 8.8 86 110-202 138-240 (329)
330 cd08261 Zn_ADH7 Alcohol dehydr 67.9 32 0.00069 31.1 8.4 84 111-202 155-257 (337)
331 cd08239 THR_DH_like L-threonin 67.9 27 0.00058 31.7 7.9 86 112-202 160-261 (339)
332 cd08263 Zn_ADH10 Alcohol dehyd 67.2 31 0.00067 31.9 8.3 86 112-202 184-286 (367)
333 KOG2651 rRNA adenine N-6-methy 67.1 15 0.00034 35.7 6.2 31 116-147 154-185 (476)
334 PRK00676 hemA glutamyl-tRNA re 66.8 43 0.00093 31.8 9.1 109 115-227 173-287 (338)
335 TIGR02822 adh_fam_2 zinc-bindi 66.7 36 0.00079 31.2 8.6 84 111-202 161-253 (329)
336 TIGR02825 B4_12hDH leukotriene 66.4 45 0.00097 30.1 9.0 87 109-202 132-236 (325)
337 cd05281 TDH Threonine dehydrog 66.3 23 0.0005 32.2 7.2 84 114-202 162-261 (341)
338 TIGR00692 tdh L-threonine 3-de 65.9 22 0.00048 32.3 6.9 85 113-202 159-260 (340)
339 cd08300 alcohol_DH_class_III c 65.4 41 0.00088 31.2 8.7 85 111-202 182-287 (368)
340 PLN02256 arogenate dehydrogena 64.7 27 0.00059 32.3 7.3 32 116-148 36-69 (304)
341 TIGR02818 adh_III_F_hyde S-(hy 64.4 23 0.00049 33.1 6.8 87 111-202 181-286 (368)
342 TIGR00675 dcm DNA-methyltransf 63.7 8.4 0.00018 35.7 3.8 121 119-244 1-148 (315)
343 PRK06153 hypothetical protein; 62.8 22 0.00047 34.5 6.4 32 115-146 175-208 (393)
344 PF03686 UPF0146: Uncharacteri 62.1 20 0.00043 29.4 5.2 58 115-173 13-76 (127)
345 cd08240 6_hydroxyhexanoate_dh_ 60.9 54 0.0012 29.8 8.6 85 113-202 173-273 (350)
346 PRK10309 galactitol-1-phosphat 60.0 44 0.00095 30.5 7.8 84 112-202 157-259 (347)
347 PRK05476 S-adenosyl-L-homocyst 59.7 28 0.00062 34.0 6.7 83 114-202 210-298 (425)
348 COG1255 Uncharacterized protei 59.0 24 0.00053 28.7 5.1 81 116-202 14-101 (129)
349 KOG1253 tRNA methyltransferase 58.9 6.8 0.00015 39.1 2.3 84 116-202 110-215 (525)
350 PF14946 DUF4501: Domain of un 58.2 8.3 0.00018 33.0 2.4 35 10-46 93-127 (180)
351 cd08286 FDH_like_ADH2 formalde 58.2 64 0.0014 29.2 8.5 82 112-202 163-265 (345)
352 PF14740 DUF4471: Domain of un 56.7 14 0.00029 34.5 3.8 66 165-237 220-287 (289)
353 PF11899 DUF3419: Protein of u 56.5 18 0.00039 34.9 4.7 52 112-164 32-86 (380)
354 PF02005 TRM: N2,N2-dimethylgu 56.5 14 0.0003 35.5 3.9 86 115-203 49-154 (377)
355 PF00107 ADH_zinc_N: Zinc-bind 55.2 19 0.00041 27.8 4.0 33 165-202 56-88 (130)
356 PF01861 DUF43: Protein of unk 54.8 1.3E+02 0.0028 27.4 9.6 107 115-233 44-172 (243)
357 PF00145 DNA_methylase: C-5 cy 54.4 16 0.00034 32.8 3.8 121 118-244 2-150 (335)
358 PF12692 Methyltransf_17: S-ad 54.3 69 0.0015 27.2 7.2 84 116-202 29-133 (160)
359 cd08233 butanediol_DH_like (2R 53.1 53 0.0012 29.9 7.2 87 111-202 168-271 (351)
360 COG0373 HemA Glutamyl-tRNA red 53.1 53 0.0011 32.1 7.3 90 115-208 177-278 (414)
361 TIGR00936 ahcY adenosylhomocys 52.7 55 0.0012 31.8 7.4 82 113-202 192-281 (406)
362 TIGR03201 dearomat_had 6-hydro 52.6 28 0.00062 32.0 5.3 36 112-148 163-200 (349)
363 PRK05396 tdh L-threonine 3-deh 52.6 51 0.0011 29.9 6.9 84 114-202 162-262 (341)
364 KOG0024 Sorbitol dehydrogenase 52.1 32 0.00069 32.8 5.4 87 111-202 165-272 (354)
365 cd08298 CAD2 Cinnamyl alcohol 52.0 79 0.0017 28.3 8.0 82 111-202 163-255 (329)
366 KOG3924 Putative protein methy 51.6 29 0.00063 33.8 5.2 94 107-202 184-307 (419)
367 cd05279 Zn_ADH1 Liver alcohol 51.3 96 0.0021 28.7 8.6 85 111-202 179-284 (365)
368 cd08301 alcohol_DH_plants Plan 51.1 58 0.0013 30.1 7.1 87 111-202 183-288 (369)
369 cd08241 QOR1 Quinone oxidoredu 51.0 1.2E+02 0.0027 26.3 8.9 85 111-202 135-237 (323)
370 cd08282 PFDH_like Pseudomonas 49.8 1.2E+02 0.0026 28.2 9.0 92 111-202 172-284 (375)
371 PRK05808 3-hydroxybutyryl-CoA 49.7 25 0.00054 31.6 4.3 78 118-200 5-115 (282)
372 COG1867 TRM1 N2,N2-dimethylgua 49.6 36 0.00077 32.9 5.4 84 116-202 53-153 (380)
373 PF07101 DUF1363: Protein of u 49.4 6.8 0.00015 30.8 0.5 14 119-132 6-19 (124)
374 PLN02494 adenosylhomocysteinas 48.4 40 0.00088 33.5 5.8 93 104-202 241-340 (477)
375 cd05289 MDR_like_2 alcohol deh 47.8 1.8E+02 0.004 25.0 10.9 83 112-202 141-237 (309)
376 COG0270 Dcm Site-specific DNA 47.8 31 0.00068 32.1 4.7 122 117-244 4-155 (328)
377 PRK15469 ghrA bifunctional gly 46.9 59 0.0013 30.2 6.4 85 115-201 135-224 (312)
378 cd08274 MDR9 Medium chain dehy 46.6 84 0.0018 28.3 7.3 85 111-202 173-272 (350)
379 TIGR02819 fdhA_non_GSH formald 45.5 1.5E+02 0.0033 28.0 9.2 91 112-202 182-298 (393)
380 PF01558 POR: Pyruvate ferredo 45.4 71 0.0015 26.5 6.2 64 132-203 15-86 (173)
381 PRK10083 putative oxidoreducta 45.3 51 0.0011 29.7 5.7 85 111-202 156-258 (339)
382 PF11599 AviRa: RRNA methyltra 45.1 36 0.00077 30.8 4.4 47 101-147 37-86 (246)
383 cd08243 quinone_oxidoreductase 44.9 1.2E+02 0.0027 26.5 8.0 82 112-202 139-237 (320)
384 cd05213 NAD_bind_Glutamyl_tRNA 44.5 53 0.0012 30.3 5.7 111 115-228 177-301 (311)
385 KOG1209 1-Acyl dihydroxyaceton 44.4 43 0.00092 30.5 4.8 32 114-146 5-40 (289)
386 PRK09260 3-hydroxybutyryl-CoA 43.9 23 0.00049 32.1 3.1 86 118-204 3-118 (288)
387 KOG2352 Predicted spermine/spe 43.3 41 0.00089 33.5 4.9 87 115-204 295-417 (482)
388 PRK09548 PTS system ascorbate- 43.0 70 0.0015 32.8 6.6 48 115-174 505-561 (602)
389 PRK08306 dipicolinate synthase 43.0 1.3E+02 0.0027 27.7 7.9 83 115-203 151-241 (296)
390 PTZ00075 Adenosylhomocysteinas 42.8 43 0.00094 33.3 5.0 92 105-202 242-340 (476)
391 PF02826 2-Hacid_dh_C: D-isome 42.3 13 0.00028 31.3 1.2 102 115-232 35-146 (178)
392 PLN02514 cinnamyl-alcohol dehy 41.6 99 0.0021 28.6 7.1 85 112-202 177-274 (357)
393 cd08265 Zn_ADH3 Alcohol dehydr 41.3 1.8E+02 0.0038 27.2 8.8 84 112-202 200-306 (384)
394 cd08242 MDR_like Medium chain 40.7 1.2E+02 0.0025 27.1 7.3 83 110-201 150-243 (319)
395 COG0604 Qor NADPH:quinone redu 40.0 1.1E+02 0.0025 28.4 7.2 91 107-204 134-242 (326)
396 PRK07819 3-hydroxybutyryl-CoA 39.5 37 0.00081 30.9 3.8 82 117-203 6-121 (286)
397 PLN02702 L-idonate 5-dehydroge 39.5 2.2E+02 0.0048 26.1 9.1 87 111-202 177-284 (364)
398 COG0686 Ald Alanine dehydrogen 39.1 54 0.0012 31.3 4.8 86 116-201 168-266 (371)
399 PF02636 Methyltransf_28: Puta 38.4 44 0.00095 29.7 4.0 34 116-149 19-61 (252)
400 cd05286 QOR2 Quinone oxidoredu 38.2 2E+02 0.0042 24.9 8.1 83 111-202 132-234 (320)
401 cd08256 Zn_ADH2 Alcohol dehydr 37.0 2.3E+02 0.0051 25.7 8.7 86 112-202 171-273 (350)
402 PRK06035 3-hydroxyacyl-CoA deh 36.9 61 0.0013 29.3 4.8 83 117-200 4-118 (291)
403 cd08260 Zn_ADH6 Alcohol dehydr 36.2 2.1E+02 0.0045 25.9 8.2 86 111-202 161-263 (345)
404 PRK08223 hypothetical protein; 36.2 63 0.0014 30.0 4.8 32 115-146 26-59 (287)
405 cd08266 Zn_ADH_like1 Alcohol d 36.2 1.3E+02 0.0028 26.5 6.8 85 111-202 162-264 (342)
406 PRK12480 D-lactate dehydrogena 36.2 55 0.0012 30.7 4.5 84 115-201 145-232 (330)
407 PF06962 rRNA_methylase: Putat 34.6 27 0.00058 29.0 1.9 39 166-204 45-93 (140)
408 cd08284 FDH_like_2 Glutathione 34.5 1E+02 0.0022 27.7 5.9 83 113-202 165-265 (344)
409 COG4301 Uncharacterized conser 34.2 2.6E+02 0.0055 26.1 8.2 91 115-206 78-196 (321)
410 PRK06274 indolepyruvate oxidor 34.0 2.1E+02 0.0045 24.2 7.4 63 132-202 25-95 (197)
411 PRK06436 glycerate dehydrogena 33.8 84 0.0018 29.1 5.2 33 115-148 121-155 (303)
412 TIGR00006 S-adenosyl-methyltra 33.8 40 0.00086 31.6 3.1 21 183-203 220-240 (305)
413 TIGR00518 alaDH alanine dehydr 33.6 45 0.00098 31.7 3.5 87 115-202 166-266 (370)
414 PRK13243 glyoxylate reductase; 33.6 52 0.0011 30.8 3.8 81 115-201 149-238 (333)
415 PLN02928 oxidoreductase family 33.5 59 0.0013 30.7 4.2 32 115-147 158-191 (347)
416 PLN02178 cinnamyl-alcohol dehy 31.8 1.3E+02 0.0027 28.4 6.2 83 114-202 177-272 (375)
417 COG0031 CysK Cysteine synthase 31.8 1.9E+02 0.0041 27.1 7.2 32 117-148 170-206 (300)
418 PLN02545 3-hydroxybutyryl-CoA 31.4 99 0.0021 27.9 5.2 83 117-200 5-116 (295)
419 PF01488 Shikimate_DH: Shikima 31.4 74 0.0016 25.5 3.9 60 115-174 11-82 (135)
420 PF10237 N6-adenineMlase: Prob 31.3 3.2E+02 0.007 23.1 10.2 86 114-204 24-124 (162)
421 PF06460 NSP13: Coronavirus NS 30.8 2.4E+02 0.0052 26.3 7.4 107 96-203 41-169 (299)
422 TIGR01035 hemA glutamyl-tRNA r 30.6 96 0.0021 30.0 5.2 35 114-148 178-214 (417)
423 PF08351 DUF1726: Domain of un 30.0 81 0.0018 24.1 3.7 39 165-205 9-47 (92)
424 TIGR01381 E1_like_apg7 E1-like 30.0 54 0.0012 34.0 3.5 32 115-146 337-370 (664)
425 COG3129 Predicted SAM-dependen 29.1 53 0.0012 30.1 2.9 33 115-148 78-112 (292)
426 PRK06130 3-hydroxybutyryl-CoA 28.7 54 0.0012 29.8 3.1 31 117-148 5-37 (311)
427 COG1565 Uncharacterized conser 28.5 1.9E+02 0.004 28.0 6.6 70 63-133 15-95 (370)
428 cd01483 E1_enzyme_family Super 28.5 59 0.0013 25.9 2.9 30 118-147 1-32 (143)
429 KOG2912 Predicted DNA methylas 28.5 1.6E+02 0.0034 28.4 6.0 46 100-146 85-134 (419)
430 cd08238 sorbose_phosphate_red 28.3 93 0.002 29.5 4.7 86 112-202 172-287 (410)
431 COG1893 ApbA Ketopantoate redu 28.3 2.5E+02 0.0054 26.0 7.4 83 118-203 2-101 (307)
432 COG0275 Predicted S-adenosylme 28.1 59 0.0013 30.6 3.1 21 183-203 224-244 (314)
433 TIGR02175 PorC_KorC 2-oxoacid: 28.0 2.4E+02 0.0052 23.6 6.7 34 162-202 61-96 (177)
434 PRK00045 hemA glutamyl-tRNA re 28.0 1.3E+02 0.0028 29.0 5.7 35 114-148 180-216 (423)
435 cd08270 MDR4 Medium chain dehy 27.9 3.2E+02 0.007 23.8 7.9 79 115-202 132-221 (305)
436 PRK00050 16S rRNA m(4)C1402 me 27.7 59 0.0013 30.3 3.1 21 183-203 216-236 (296)
437 PRK11064 wecC UDP-N-acetyl-D-m 27.5 1.6E+02 0.0036 28.3 6.2 31 117-148 4-36 (415)
438 PRK05708 2-dehydropantoate 2-r 27.4 3.4E+02 0.0074 24.7 8.1 81 117-202 3-103 (305)
439 cd08296 CAD_like Cinnamyl alco 27.3 2.6E+02 0.0055 25.2 7.3 85 112-202 160-258 (333)
440 PRK07530 3-hydroxybutyryl-CoA 27.2 1.3E+02 0.0028 27.2 5.2 79 117-200 5-116 (292)
441 PRK11199 tyrA bifunctional cho 27.1 2E+02 0.0043 27.3 6.7 71 116-199 98-171 (374)
442 cd08287 FDH_like_ADH3 formalde 27.0 2.4E+02 0.0053 25.3 7.0 85 112-202 165-267 (345)
443 PRK11730 fadB multifunctional 27.0 1.5E+02 0.0032 30.9 6.2 83 117-204 314-429 (715)
444 PLN00203 glutamyl-tRNA reducta 26.9 1.8E+02 0.0039 29.3 6.5 33 116-148 266-300 (519)
445 PF01795 Methyltransf_5: MraW 26.8 43 0.00094 31.4 2.0 21 183-203 221-241 (310)
446 PRK06487 glycerate dehydrogena 26.7 1.1E+02 0.0023 28.4 4.7 75 115-200 147-230 (317)
447 PRK11790 D-3-phosphoglycerate 26.6 1.2E+02 0.0025 29.4 5.0 32 115-147 150-183 (409)
448 COG5379 BtaA S-adenosylmethion 26.5 90 0.002 29.7 4.0 35 113-148 61-95 (414)
449 PRK08293 3-hydroxybutyryl-CoA 26.5 56 0.0012 29.5 2.7 84 117-201 4-118 (287)
450 PRK07502 cyclohexadienyl dehyd 26.3 61 0.0013 29.6 2.9 83 117-201 7-98 (307)
451 PRK08534 pyruvate ferredoxin o 26.3 2.9E+02 0.0063 23.2 6.9 33 164-202 63-96 (181)
452 PRK07574 formate dehydrogenase 26.3 1.3E+02 0.0027 29.1 5.2 85 115-201 191-282 (385)
453 PRK06853 indolepyruvate oxidor 26.1 2.9E+02 0.0062 23.5 6.9 30 166-202 67-96 (197)
454 PTZ00357 methyltransferase; Pr 25.9 2E+02 0.0044 30.6 6.6 80 118-198 703-830 (1072)
455 cd08267 MDR1 Medium chain dehy 25.8 4.4E+02 0.0096 22.9 9.6 84 112-202 140-239 (319)
456 cd01065 NAD_bind_Shikimate_DH 25.6 2.2E+02 0.0048 22.4 5.9 35 114-148 17-53 (155)
457 PRK09510 tolA cell envelope in 25.6 82 0.0018 30.6 3.7 32 1-32 1-32 (387)
458 TIGR02441 fa_ox_alpha_mit fatt 25.2 3.9E+02 0.0084 28.0 8.9 82 117-203 336-450 (737)
459 PRK06249 2-dehydropantoate 2-r 25.1 4.1E+02 0.009 24.1 8.2 84 116-202 5-105 (313)
460 PF13807 GNVR: G-rich domain o 25.1 1.1E+02 0.0023 22.5 3.5 30 3-32 50-79 (82)
461 PRK15057 UDP-glucose 6-dehydro 24.8 1.5E+02 0.0033 28.4 5.4 30 118-148 2-32 (388)
462 PRK05225 ketol-acid reductoiso 24.7 1.5E+02 0.0032 29.7 5.3 86 115-203 35-131 (487)
463 COG0863 DNA modification methy 24.6 1.8E+02 0.0039 25.8 5.6 46 101-148 209-254 (302)
464 COG0677 WecC UDP-N-acetyl-D-ma 24.5 5E+02 0.011 25.7 8.7 81 117-202 10-127 (436)
465 PF01795 Methyltransf_5: MraW 24.5 1.2E+02 0.0026 28.5 4.5 59 112-174 17-77 (310)
466 cd05288 PGDH Prostaglandin deh 24.3 3E+02 0.0066 24.3 7.1 82 112-202 142-243 (329)
467 PRK10458 DNA cytosine methylas 24.2 93 0.002 30.9 3.9 32 116-147 88-119 (467)
468 TIGR02356 adenyl_thiF thiazole 24.0 86 0.0019 27.0 3.3 33 115-147 20-54 (202)
469 cd08235 iditol_2_DH_like L-idi 23.9 3E+02 0.0064 24.7 7.0 86 112-202 162-264 (343)
470 cd08299 alcohol_DH_class_I_II_ 23.9 4.2E+02 0.0091 24.6 8.2 37 111-147 186-224 (373)
471 KOG1252 Cystathionine beta-syn 23.6 1.2E+02 0.0027 29.0 4.4 32 117-148 213-249 (362)
472 PF12242 Eno-Rase_NADH_b: NAD( 23.5 3.2E+02 0.007 20.6 5.7 38 110-147 33-73 (78)
473 PRK06522 2-dehydropantoate 2-r 23.5 2E+02 0.0042 25.6 5.7 82 118-202 2-99 (304)
474 PF14258 DUF4350: Domain of un 23.3 2.3E+02 0.0051 19.6 5.0 19 184-202 51-69 (70)
475 cd08273 MDR8 Medium chain dehy 23.0 5.3E+02 0.011 22.7 8.7 84 111-202 135-232 (331)
476 KOG0821 Predicted ribosomal RN 23.0 1.8E+02 0.0039 26.7 5.1 31 115-145 50-80 (326)
477 PRK08818 prephenate dehydrogen 22.8 1.8E+02 0.0039 27.9 5.5 75 116-200 4-85 (370)
478 PRK15409 bifunctional glyoxyla 22.6 1.4E+02 0.0029 28.0 4.5 81 115-201 144-234 (323)
479 PRK08328 hypothetical protein; 22.5 91 0.002 27.5 3.2 32 115-146 26-59 (231)
480 PRK08338 2-oxoglutarate ferred 22.5 4.2E+02 0.0091 22.0 7.2 31 165-202 62-92 (170)
481 cd08246 crotonyl_coA_red croto 22.1 3.2E+02 0.007 25.3 7.0 30 167-202 285-314 (393)
482 PRK08268 3-hydroxy-acyl-CoA de 22.0 1.4E+02 0.0029 29.8 4.6 81 117-202 8-121 (507)
483 TIGR00140 hupD hydrogenase exp 21.8 1.9E+02 0.004 22.9 4.7 40 106-147 6-45 (134)
484 KOG1269 SAM-dependent methyltr 21.8 49 0.0011 31.7 1.4 39 163-203 275-313 (364)
485 PRK11154 fadJ multifunctional 21.8 2.2E+02 0.0048 29.6 6.3 85 117-204 310-426 (708)
486 cd05282 ETR_like 2-enoyl thioe 21.6 5.5E+02 0.012 22.5 8.2 84 112-202 135-236 (323)
487 PRK12767 carbamoyl phosphate s 21.6 1.4E+02 0.003 27.0 4.3 33 117-149 2-36 (326)
488 PF10727 Rossmann-like: Rossma 21.4 1.4E+02 0.003 24.1 3.8 82 116-204 10-104 (127)
489 PRK12548 shikimate 5-dehydroge 21.2 3.1E+02 0.0068 24.9 6.6 33 115-148 125-160 (289)
490 PRK07066 3-hydroxybutyryl-CoA 21.0 82 0.0018 29.5 2.7 83 117-200 8-116 (321)
491 PRK13581 D-3-phosphoglycerate 21.0 1E+02 0.0022 30.8 3.5 78 115-201 139-228 (526)
492 KOG2078 tRNA modification enzy 20.6 46 0.00099 33.0 0.9 42 111-153 245-286 (495)
493 PF11253 DUF3052: Protein of u 20.6 4.8E+02 0.01 21.4 8.5 81 165-251 43-125 (127)
494 PF08541 ACP_syn_III_C: 3-Oxoa 20.4 72 0.0016 23.3 1.8 25 104-128 57-81 (90)
495 KOG0685 Flavin-containing amin 20.3 1.5E+02 0.0032 29.7 4.4 52 115-170 20-73 (498)
496 PF13602 ADH_zinc_N_2: Zinc-bi 20.2 41 0.00088 25.8 0.4 36 164-203 16-51 (127)
497 PRK15116 sulfur acceptor prote 20.2 2.4E+02 0.0053 25.8 5.6 32 115-146 29-62 (268)
498 PRK08410 2-hydroxyacid dehydro 20.2 2.3E+02 0.005 26.2 5.5 98 115-231 144-250 (311)
499 PRK08229 2-dehydropantoate 2-r 20.0 3.7E+02 0.008 24.5 6.8 80 118-200 4-104 (341)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.89 E-value=9.3e-23 Score=182.12 Aligned_cols=163 Identities=20% Similarity=0.236 Sum_probs=119.1
Q ss_pred HHHhcccChhhHhhhCchhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC--
Q 025071 74 HQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP-- 150 (258)
Q Consensus 74 ~~l~~~l~~~l~~~W~~~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~-- 150 (258)
+.+|+.++..++..|+. .+++.....+|.+|||||||||..+..+++. |..+|+|+|+|+.+
T Consensus 25 D~~n~~~S~g~~~~Wr~---------------~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~ 89 (238)
T COG2226 25 DLMNDLMSFGLHRLWRR---------------ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLE 89 (238)
T ss_pred HhhcccccCcchHHHHH---------------HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHH
Confidence 44667777777788752 1222223447899999999999999999874 55689999997531
Q ss_pred -------------CceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-------
Q 025071 151 -------------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA------- 209 (258)
Q Consensus 151 -------------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~------- 209 (258)
..+++|||++|||+|+|||+|.++ .++++.+++++++|++|||||||++++.--..+..
T Consensus 90 ~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~ 169 (238)
T COG2226 90 VAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAY 169 (238)
T ss_pred HHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHH
Confidence 347899999999999999999996 89999999999999999999999888863211110
Q ss_pred C------------c--------C-----CCCCCCChhHHHHHhhcCceEEeeeec-CCCCeEEEEEEe
Q 025071 210 D------------K--------Y-----SANDLFSVKPLVKLFRESELVAVRKVD-GFGLDTEVVFRK 251 (258)
Q Consensus 210 ~------------~--------y-----~~~~~~s~~~l~~lf~~~~~~~v~~v~-g~~l~~~~~f~K 251 (258)
. . | +...+.+.+++.+++.+.|+..+..-+ .+|.-...+-+|
T Consensus 170 ~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 170 ILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 0 0 0 112234778899999999998888444 555544444443
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.85 E-value=2.2e-21 Score=172.83 Aligned_cols=127 Identities=23% Similarity=0.317 Sum_probs=67.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
..++.+|||+|||||..+..+++. + ...|+|+|+|+. ...++++|+++|||+|+|||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 457889999999999999988764 3 248999999752 2357899999999999999999986
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEe-ccccCc-------------------------CcC-----CCCCCCChhHH
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHV-ALSRRA-------------------------DKY-----SANDLFSVKPL 223 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v-~~~~~~-------------------------~~y-----~~~~~~s~~~l 223 (258)
.++++.++.++++|++|||||||+++++. ..++.. ..| +..++.+.+++
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~ 204 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEEL 204 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------------------
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999988863 222110 011 23344578899
Q ss_pred HHHhhcCceEEeeeec
Q 025071 224 VKLFRESELVAVRKVD 239 (258)
Q Consensus 224 ~~lf~~~~~~~v~~v~ 239 (258)
.++++++|+.++...+
T Consensus 205 ~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 205 KELLEEAGFKNVEYRP 220 (233)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 9999999988776543
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.80 E-value=2.7e-18 Score=154.97 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=103.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC------------------CCceeeecCCCCCCCCCCeeEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR------------------PPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~------------------~~~~~~aDa~~LPf~d~SFD~V 171 (258)
.+.++.+|||+|||||..+..+++. + ..+|+|+|+++. ...++++|++++||++++||+|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 3567889999999999999888764 4 247999998742 1236889999999999999999
Q ss_pred Eec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-------------------------CcC-----CCCCCCCh
Q 025071 172 FSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------------DKY-----SANDLFSV 220 (258)
Q Consensus 172 ~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------------~~y-----~~~~~~s~ 220 (258)
+++ +++|+.++..+++|++|+|||||++++........ +.| +..++++.
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~ 229 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTG 229 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCH
Confidence 985 89999999999999999999999998874321110 000 11356799
Q ss_pred hHHHHHhhcCceEEeeeec-CCCCeE
Q 025071 221 KPLVKLFRESELVAVRKVD-GFGLDT 245 (258)
Q Consensus 221 ~~l~~lf~~~~~~~v~~v~-g~~l~~ 245 (258)
+++.++++++|+..+...+ +++.-+
T Consensus 230 ~el~~ll~~aGF~~~~~~~~~~g~~~ 255 (261)
T PLN02233 230 EELEKLALEAGFSSAKHYEISGGLMG 255 (261)
T ss_pred HHHHHHHHHCCCCEEEEEEcCCCeeE
Confidence 9999999999988777654 444433
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.79 E-value=1.8e-18 Score=161.63 Aligned_cols=125 Identities=24% Similarity=0.296 Sum_probs=98.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
.++.+|||||||+|..+..|++....+|+|+|+++. ...++++|+.++||++++||+|++. ++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 567899999999999999998752248999998742 2347889999999999999999995 89
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccC---c----------------CcCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRR---A----------------DKYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~---~----------------~~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+|+.++.++++|++|+|||||++++.....+. . ..|...++.+.+++.++++++|+..+..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 99999999999999999999999886432211 0 0111223357899999999999876654
Q ss_pred e
Q 025071 238 V 238 (258)
Q Consensus 238 v 238 (258)
.
T Consensus 277 ~ 277 (340)
T PLN02244 277 E 277 (340)
T ss_pred e
Confidence 3
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.78 E-value=4.3e-19 Score=132.46 Aligned_cols=82 Identities=38% Similarity=0.514 Sum_probs=69.3
Q ss_pred EEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHH
Q 025071 120 LSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFV 186 (258)
Q Consensus 120 LDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l 186 (258)
||+|||+|..+..|++.+..+++|+|+++. ...+..+|++++||+++|||+|++. +++|+.++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 899999999999999885568999998742 1238899999999999999999995 888888999999
Q ss_pred HHHHhcccCCcEEEE
Q 025071 187 GEIERTLKPAGVCVL 201 (258)
Q Consensus 187 ~Ei~RVLKPGG~lii 201 (258)
+|+.|+|||||++++
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999985
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.75 E-value=1.9e-17 Score=148.00 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=107.4
Q ss_pred hhCchhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC--------CCceeeec
Q 025071 87 VWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR--------PPLVIKGD 157 (258)
Q Consensus 87 ~W~~~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~--------~~~~~~aD 157 (258)
+|+...|.+........+..+++.....++.+|||||||+|..+..|++.. ..+|+|+|+++. ...++++|
T Consensus 1 ~w~~~~y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d 80 (255)
T PRK14103 1 MWDPDVYLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGD 80 (255)
T ss_pred CCCHHHHHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcC
Confidence 366666655444333445556655445678899999999999999998752 347999999753 23578899
Q ss_pred CCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc------------CcC----------CC
Q 025071 158 FHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA------------DKY----------SA 214 (258)
Q Consensus 158 a~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~------------~~y----------~~ 214 (258)
+++++ ++++||+|+++ +++|+.++..++++++|+|||||.+++.++..... ..+ ..
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 159 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVG 159 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccC
Confidence 98885 67899999996 88999999999999999999999999875421100 011 11
Q ss_pred CCCCChhHHHHHhhcCceE
Q 025071 215 NDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 215 ~~~~s~~~l~~lf~~~~~~ 233 (258)
..+.+.+++.++++++|+.
T Consensus 160 ~~~~~~~~~~~~l~~aGf~ 178 (255)
T PRK14103 160 AVVQTPAGYAELLTDAGCK 178 (255)
T ss_pred cCCCCHHHHHHHHHhCCCe
Confidence 2345889999999999974
No 7
>PRK05785 hypothetical protein; Provisional
Probab=99.75 E-value=3.7e-17 Score=144.72 Aligned_cols=137 Identities=19% Similarity=0.206 Sum_probs=100.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC-------CceeeecCCCCCCCCCCeeEEEec-cccccCChHHHH
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFV 186 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~-------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l 186 (258)
++.+|||||||||..+..+++....+|+|+|+|+.+ ...+++|++++||+|++||+|+++ +++|+.++++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l 130 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI 130 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence 478999999999999999987622489999997532 236789999999999999999996 899999999999
Q ss_pred HHHHhcccCCcEEEEEeccccCc-------------------------CcC-----CCCCCCChhHHHHHhhcC-ceEEe
Q 025071 187 GEIERTLKPAGVCVLHVALSRRA-------------------------DKY-----SANDLFSVKPLVKLFRES-ELVAV 235 (258)
Q Consensus 187 ~Ei~RVLKPGG~lii~v~~~~~~-------------------------~~y-----~~~~~~s~~~l~~lf~~~-~~~~v 235 (258)
+|++|||||.+ .++.++.+... ..| +...+.+.+++.++++++ +.+..
T Consensus 131 ~e~~RvLkp~~-~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~~~~ 209 (226)
T PRK05785 131 AEFTRVSRKQV-GFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADIKVY 209 (226)
T ss_pred HHHHHHhcCce-EEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCceEE
Confidence 99999999943 23333221100 011 223345778999999985 34444
Q ss_pred eeecCCCCeEEEEEEeCC
Q 025071 236 RKVDGFGLDTEVVFRKKK 253 (258)
Q Consensus 236 ~~v~g~~l~~~~~f~K~~ 253 (258)
... .+|.-+..+-+|++
T Consensus 210 ~~~-~~G~~~~~~~~k~~ 226 (226)
T PRK05785 210 EER-GLGLVYFVVGSSRG 226 (226)
T ss_pred EEc-cccEEEEEEEeeCC
Confidence 443 56776777777764
No 8
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.74 E-value=7.2e-18 Score=137.88 Aligned_cols=123 Identities=28% Similarity=0.446 Sum_probs=97.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC-----CceeeecCCCCCCCCCCeeEEEec-cccccCChHHHH
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP-----PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFV 186 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~-----~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l 186 (258)
..++.+|||+|||+|..+..+++.|. +++|+|+++.. ......+....++++++||+|+|+ +++|+.+|..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 46788999999999999999998887 89999997532 123334445667889999999995 899999999999
Q ss_pred HHHHhcccCCcEEEEEeccccC-------cCcC-----CCCCCCChhHHHHHhhcCceEEee
Q 025071 187 GEIERTLKPAGVCVLHVALSRR-------ADKY-----SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 187 ~Ei~RVLKPGG~lii~v~~~~~-------~~~y-----~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+++.++|||||++++.++.... .-.+ ....+++.+++.+++++.|+..+.
T Consensus 99 ~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 99 KELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999999999999998775310 0011 223457999999999999987654
No 9
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.74 E-value=1e-17 Score=149.94 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=107.0
Q ss_pred HHHhcccChhhHhhhCchhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-C------CCcEEEEeC
Q 025071 74 HQLNKTLNPKLRAVWTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-G------VSDSIGIDL 146 (258)
Q Consensus 74 ~~l~~~l~~~l~~~W~~~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g------~~~v~GvD~ 146 (258)
..+|+.++...+++|... + +......++.++||+|||||..+..+.+. + ..+|+.+|+
T Consensus 74 D~mND~mSlGiHRlWKd~------------~---v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di 138 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDM------------F---VSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI 138 (296)
T ss_pred HHHHHHhhcchhHHHHHH------------h---hhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC
Confidence 456777777788888521 1 11123346789999999999998766442 2 257999999
Q ss_pred CCC------------------CCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEE-eccc
Q 025071 147 VPR------------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLH-VALS 206 (258)
Q Consensus 147 s~~------------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~-v~~~ 206 (258)
++. ...|+.+|++.|||+|++||..+++ .+..+.+++++++|++|||||||++.+. ++..
T Consensus 139 np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 139 NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 752 1247889999999999999999885 8999999999999999999999998876 3321
Q ss_pred cC------cC---------------------cC---CCCCCCChhHHHHHhhcCceEEee
Q 025071 207 RR------AD---------------------KY---SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 207 ~~------~~---------------------~y---~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
.. .+ .| +.+.+.+-+++..+-.++|+..+.
T Consensus 219 ~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 219 ENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred ccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 10 01 11 233444667788888888877665
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.74 E-value=7.1e-17 Score=143.60 Aligned_cols=119 Identities=19% Similarity=0.280 Sum_probs=95.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------CceeeecCCCCCCCCCCeeEEEec-cccccCCh
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p 182 (258)
.++.+|||+|||+|..+..+++.| .+++|+|+++.. ..++++|++.+|+++++||+|+++ +++|..++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 356799999999999999888776 489999997531 247889999999999999999996 78888899
Q ss_pred HHHHHHHHhcccCCcEEEEEeccccC-----------cCcCCCCCCCChhHHHHHhhcCceE
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALSRR-----------ADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~~~-----------~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
..+++|+.|+|||||.+++....... ......+++++.+++..++++.++.
T Consensus 120 ~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 120 STALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCce
Confidence 99999999999999999987543211 0112345667889999999877643
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.74 E-value=3.8e-17 Score=152.06 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=95.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
++.+|||||||+|..+..|++.|. +|+|||.++. ...++++|++++|+++++||+|++. +++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 567999999999999999988775 7999998742 1246788999999999999999995 899
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccC--------cC----c------CCCCCCCChhHHHHHhhcCceEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRR--------AD----K------YSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~--------~~----~------y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
|+.+|..+++|+.|+|||||.+++.+..... .. . .....+++.+++.+++++.|+..
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i 284 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDV 284 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeE
Confidence 9999999999999999999999998642210 00 0 01124679999999999988653
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.72 E-value=1e-16 Score=140.38 Aligned_cols=140 Identities=21% Similarity=0.265 Sum_probs=104.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||+|||+|..+..+++. + ..+|+|+|+++. ...++.+|++.+|+++++||+|+++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4567889999999999999888764 3 247999998742 1246788999999999999999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC--------------------------cC-----CCCCCCChhH
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD--------------------------KY-----SANDLFSVKP 222 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~--------------------------~y-----~~~~~~s~~~ 222 (258)
.++|..++.++++|+.|+|||||++++......... .| ....+.+.++
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDE 201 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHH
Confidence 788999999999999999999999987643221100 00 1123457789
Q ss_pred HHHHhhcCceEEeeeec-CCCCeEEEEEEe
Q 025071 223 LVKLFRESELVAVRKVD-GFGLDTEVVFRK 251 (258)
Q Consensus 223 l~~lf~~~~~~~v~~v~-g~~l~~~~~f~K 251 (258)
+.++++++|+..+.... .+|..+.++-+|
T Consensus 202 l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 202 LAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 99999999987665443 446666666554
No 13
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.70 E-value=2.2e-16 Score=146.46 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=97.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------------CceeeecCCCCCCCCCCeeEEEec-c
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
..++.+|||||||+|..+..++..|...|+|+|.++.. ..+..++++++|+. ++||+|+|. +
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 34678999999999999888888776679999987521 13456778888875 489999995 8
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccc---c-----CcCcCC----CCCCCChhHHHHHhhcCceEEeeeecC
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALS---R-----RADKYS----ANDLFSVKPLVKLFRESELVAVRKVDG 240 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~---~-----~~~~y~----~~~~~s~~~l~~lf~~~~~~~v~~v~g 240 (258)
++|..+|..+++|++|+|||||.+++..... . ....|. ...+++..++..+++++|+..+..++.
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 9999999999999999999999999863211 1 011221 123458999999999999998876643
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=2.3e-16 Score=146.64 Aligned_cols=125 Identities=23% Similarity=0.310 Sum_probs=98.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
..+.+|||||||+|..+..+++.|...|+|+|.++. ...++.+|++++|+ +++||+|+|. ++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 357899999999999999998888667999998641 12467788999999 8899999995 89
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEecc---cc-----CcCcCCC-C---CCCChhHHHHHhhcCceEEeeeec
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVAL---SR-----RADKYSA-N---DLFSVKPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~---~~-----~~~~y~~-~---~~~s~~~l~~lf~~~~~~~v~~v~ 239 (258)
+|..+|..++++++|+|||||.+++.... .. ..+.|.. . .+.+..++..++.++|+..+..++
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 99999999999999999999999886321 10 0112311 1 134889999999999988776653
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.69 E-value=4.7e-16 Score=140.52 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=100.0
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
+++...+.++.+|||||||+|..+..+++....+|+|+|+++. ...+..+|+.++||++++||+|++
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s 123 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYS 123 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEE
Confidence 3433356788999999999999988887532248999998742 134678899999999999999999
Q ss_pred c-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccCcC-------cC---CCCCCCChhHHHHHhhcCceEEeeeec
Q 025071 174 N-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRAD-------KY---SANDLFSVKPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 174 ~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-------~y---~~~~~~s~~~l~~lf~~~~~~~v~~v~ 239 (258)
. ++.|+. ++..+++|++|+|||||++++......... .+ ...++.+..++.++++++|+..+...+
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence 4 778875 788999999999999999998744221110 11 122456889999999999987766543
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=1.2e-15 Score=136.65 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=93.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCC-CCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQP-FDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LP-f~d~SFD~V~s~-~ 175 (258)
.++.+|||+|||+|..+..|++.|. +|+|+|+++. ...++++|+.+++ +.+++||+|++. +
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999998874 8999999742 1246778888774 778999999995 8
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEeccccC----------c----Cc------C--CCCCCCChhHHHHHhhcCceE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVALSRR----------A----DK------Y--SANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~----------~----~~------y--~~~~~~s~~~l~~lf~~~~~~ 233 (258)
++|+.+|..+++++.|+|||||++++....... . .. . .....++.+++.+++++.|+.
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~ 201 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQ 201 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCe
Confidence 899999999999999999999999886432110 0 00 0 112235789999999999876
Q ss_pred Eee
Q 025071 234 AVR 236 (258)
Q Consensus 234 ~v~ 236 (258)
.+.
T Consensus 202 ~~~ 204 (255)
T PRK11036 202 IMG 204 (255)
T ss_pred Eee
Confidence 543
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=2.2e-15 Score=145.81 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=100.0
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
+++...+.++.+|||||||+|..+..|++....+|+|+|+|+. ...+.++|+.++|+++++||+|+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 337 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIY 337 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEE
Confidence 3443345677899999999999988887642247999999742 12467899999999999999999
Q ss_pred ec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc---C---cC---CCCCCCChhHHHHHhhcCceEEee
Q 025071 173 SN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA---D---KY---SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 173 s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~---~---~y---~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|. +++|+.+|..+++|++|+|||||.+++........ . .+ ....+++.+++.++++++|+..+.
T Consensus 338 s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~ 411 (475)
T PLN02336 338 SRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVI 411 (475)
T ss_pred ECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeee
Confidence 95 89999999999999999999999999874322110 0 01 113456889999999999987664
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.64 E-value=2.4e-15 Score=134.15 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=86.2
Q ss_pred hCchhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------CCceeee
Q 025071 88 WTTRDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------PPLVIKG 156 (258)
Q Consensus 88 W~~~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------~~~~~~a 156 (258)
|+...+.+.........+.+++...+.++.+|||||||+|..+..+++. +..+|+|+|+++. ...+..+
T Consensus 4 w~~~~Y~~~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~ 83 (258)
T PRK01683 4 WNPSLYLKFEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA 83 (258)
T ss_pred CCHHHHHHHHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence 5544443322222223444554444567889999999999999988864 3458999999752 2346788
Q ss_pred cCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 157 DFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 157 Da~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+..++ ++++||+|+++ +++|+.++..+++++.|+|||||.+++.++
T Consensus 84 d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 84 DIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred chhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 888775 45699999996 788999999999999999999999998754
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=1.3e-14 Score=125.56 Aligned_cols=120 Identities=22% Similarity=0.282 Sum_probs=85.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
..++.+|||+|||+|..+..|++.|. +|+|+|+|+.. ..+.++|+.+++++ ++||+|+++ ++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecch
Confidence 34568999999999999999998875 89999997521 23566788888875 579999996 56
Q ss_pred cccC--ChHHHHHHHHhcccCCcEEEEEeccccCcCcC--CCCCCCChhHHHHHhhcCceEE
Q 025071 177 DHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRADKY--SANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 177 ~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y--~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
+|+. +...+++++.|+|||||++++......+...+ .....++.+++.++|+....++
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~ 167 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWEMVK 167 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhCCCeEEE
Confidence 6554 34678999999999999965542221111111 1123468899999998444443
No 20
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.61 E-value=1.1e-14 Score=136.45 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=94.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 114 FNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
.++.+|||||||+|..+..+++ .+..+++|+|.++. ...++.+|++++||++++||+|+++ +++|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999998877765 34458999998642 2346889999999999999999995 78999
Q ss_pred CChHHHHHHHHhcccCCcEEEEEeccccC--cCcC-C--CCCCCChhHHHHHhhcCceEEee
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLHVALSRR--ADKY-S--ANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~v~~~~~--~~~y-~--~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
.+++.+++|++|+|||||++++..+.... ...+ . ...+.+.+++.+++++.|+..+.
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 99999999999999999998876432211 0011 0 01234789999999999986544
No 21
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.60 E-value=7.9e-16 Score=136.92 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=91.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC--------------ceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP--------------LVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~--------------~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
.++.+|||||||.|.++..|++.| +.|+|+|+++.+. .+.++.+++|-.+.++||+|+|. +++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 378899999999999999999999 5899999976432 14445566666666899999996 9999
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCc-------------------CcCCCCCCCChhHHHHHhhcCceE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------DKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
+++|+.+++++.+.+||||.+++.... |.. .......+...+|+..++.+.++.
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STin-rt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTIN-RTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccc-cCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCce
Confidence 999999999999999999999997653 210 011122345678888888876543
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=2e-14 Score=124.25 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
.++.+|||+|||+|..+.+|++.|. +|+|+|+++. ......+|...++++ ++||+|+++ +++|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 3567999999999999999998885 8999999752 123455677667765 589999996 6666
Q ss_pred cC--ChHHHHHHHHhcccCCcEEEEEeccc-cCcCc-CCCCCCCChhHHHHHhhcCceEEee
Q 025071 179 AL--YPWKFVGEIERTLKPAGVCVLHVALS-RRADK-YSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 179 ~~--~p~~~l~Ei~RVLKPGG~lii~v~~~-~~~~~-y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+. +...++++++|+|||||++++..... ..... ......++..++.++|.....+...
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~~~~~~~~ 168 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYADWELLKYN 168 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCCCeEEEee
Confidence 64 34578899999999999865543211 11111 1123357899999999876555444
No 23
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.57 E-value=2.1e-14 Score=131.96 Aligned_cols=124 Identities=27% Similarity=0.390 Sum_probs=97.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCc--eeeecCCCCCCCCCCeeEEEe-cccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPL--VIKGDFHAQPFDNGTFDFEFS-NVFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~--~~~aDa~~LPf~d~SFD~V~s-~~l~ 177 (258)
.|.+|||||||+|...-.+...|...|+|+|.+.. ... ..-...+.||. .++||+|+| +++-
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 68899999999999999999889888999997531 111 12135678888 789999999 5999
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEecccc--------CcCcCC-CCCC---CChhHHHHHhhcCceEEeeeec
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSR--------RADKYS-ANDL---FSVKPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~--------~~~~y~-~~~~---~s~~~l~~lf~~~~~~~v~~v~ 239 (258)
|..+|-..++++...|+|||.+++.+-.-. ..++|. .+++ .|...+..|++++|+.+++.++
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 999999999999999999999998643211 123452 2222 3899999999999999998875
No 24
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.56 E-value=8.4e-14 Score=122.58 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------------------CceeeecCCCCCCC-C
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------------------PLVIKGDFHAQPFD-N 165 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------------------~~~~~aDa~~LPf~-d 165 (258)
.++++|||+|||.|..+.+|++.|+ +|+|+|+|+.. ..+.++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5678999999999999999999997 79999987531 23478898888754 4
Q ss_pred CCeeEEEec-cccccCCh--HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc-CceEEeee
Q 025071 166 GTFDFEFSN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE-SELVAVRK 237 (258)
Q Consensus 166 ~SFD~V~s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~-~~~~~v~~ 237 (258)
+.||.|+.. +++|++.. ..+++.+.++|||||++++..-.............++..++.++|.. .++..+..
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~ 187 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLES 187 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEee
Confidence 679999985 67777522 34789999999999975554221111111112234688999999974 36655544
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.56 E-value=5.7e-14 Score=126.46 Aligned_cols=124 Identities=22% Similarity=0.311 Sum_probs=92.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHh-cCC-CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKL-VGV-SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~-~g~-~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
+.++.+|||+|||+|..+..+++ .|. .+|+|+|+++. ...+..+|++++|+++++||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 56789999999999997766554 343 36999998642 1235778999999999999999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-C--------cC--CCCCCCChhHHHHHhhcCceEEee
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-D--------KY--SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-~--------~y--~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+++|..++..+++|++|+|||||++++.-...... . .+ .....++.+++.+++++.|+..+.
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 78888899999999999999999998862211100 0 00 011234678899999988876543
No 26
>PRK08317 hypothetical protein; Provisional
Probab=99.55 E-value=1.3e-13 Score=119.38 Aligned_cols=125 Identities=26% Similarity=0.371 Sum_probs=93.4
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..+.++.+|||+|||+|..+..+++.. ..+++|+|+++. ...+..+|+..+|+++++||+|++.
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEe
Confidence 345678899999999999998887642 357999998742 1236778999999999999999995
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEecccc----Cc-C---------cC--CCCCCCChhHHHHHhhcCceEEe
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSR----RA-D---------KY--SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~----~~-~---------~y--~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
+++|+.++..+++++.++|||||.+++..+... .. . .+ ...+.+....+.++++++|+..+
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 172 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDI 172 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCce
Confidence 899999999999999999999999988653210 00 0 00 11122345678888998887643
No 27
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=9.5e-14 Score=126.71 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=87.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
++++|||+|||+|..+.+|++.|. +|+|+|+++.. ..+..+|+...++ +++||+|++. +++|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 456999999999999999998885 89999987521 2345667776666 7899999996 66665
Q ss_pred C--ChHHHHHHHHhcccCCcEEEEEeccccCcCc--CCCCCCCChhHHHHHhhcCceEEee
Q 025071 180 L--YPWKFVGEIERTLKPAGVCVLHVALSRRADK--YSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 180 ~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~--y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
. +...+++++.|+|||||++++.......... -+....++..++.++|+..+++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQDWEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCCCEEEEEe
Confidence 4 3456889999999999997665332211101 1223447899999999987776653
No 28
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.55 E-value=2.1e-13 Score=118.61 Aligned_cols=140 Identities=21% Similarity=0.201 Sum_probs=104.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..++.+|||+|||+|..+..+++.+ ..+++|+|+++. ...+..+|+..+++++++||+|+++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 3467899999999999998887755 368999998631 1246778998999988999999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCcC-------------------cCCC------------CCCCChhH
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRAD-------------------KYSA------------NDLFSVKP 222 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~-------------------~y~~------------~~~~s~~~ 222 (258)
+++|..++...++++.++|+|||.+++......... .+.. ...++..+
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 788999999999999999999999877532111000 0000 22457788
Q ss_pred HHHHhhcCceEEeeeec-CCCCeEEEEEEeC
Q 025071 223 LVKLFRESELVAVRKVD-GFGLDTEVVFRKK 252 (258)
Q Consensus 223 l~~lf~~~~~~~v~~v~-g~~l~~~~~f~K~ 252 (258)
+.+++.++|+..+.... .+++.+....+|+
T Consensus 209 ~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 209 LAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 99999999987665443 6677677777664
No 29
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.55 E-value=4.6e-14 Score=122.22 Aligned_cols=122 Identities=21% Similarity=0.322 Sum_probs=93.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------CCceeeecCC-CCC-CCCCCeeEEEec-cccccC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------PPLVIKGDFH-AQP-FDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------~~~~~~aDa~-~LP-f~d~SFD~V~s~-~l~h~~ 180 (258)
.++++++|||+|||.|.+..+|.+.......|+|+++. ...++++|++ .|+ |+|+|||.|+.+ ++.++.
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 36789999999999999999998743347999998753 2358888876 454 999999999986 899999
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeccccC---------------cC--c---C--CCCCCCChhHHHHHhhcCceEEee
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSRR---------------AD--K---Y--SANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~~---------------~~--~---y--~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
+|+.+++|+.|| |...++++|.-.+ .+ . | +.-++.+.+++.+++++.|+.-..
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~ 164 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEE 164 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEE
Confidence 999999999888 5578888775321 01 1 1 122456899999999999865444
No 30
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=4.9e-14 Score=122.28 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=89.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-----------CCceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
.+.+|||+|||+|..+..+++.+ ..+++|+|+++. ...++.+|+..+|+++++||+|+++ +++|..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 45789999999999999988765 346899998642 1357889999999999999999996 7888889
Q ss_pred hHHHHHHHHhcccCCcEEEEEeccccCcCc----C--CCCCCCChhHHHHHhhcC
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALSRRADK----Y--SANDLFSVKPLVKLFRES 230 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~----y--~~~~~~s~~~l~~lf~~~ 230 (258)
+..+++++.|+|||||.+++..+....... + ....+++.+++.+++++.
T Consensus 114 ~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (240)
T TIGR02072 114 LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS 168 (240)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 999999999999999999987643211000 0 123445777788888764
No 31
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.54 E-value=1.8e-13 Score=117.84 Aligned_cols=137 Identities=23% Similarity=0.288 Sum_probs=101.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGV--SDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
.++.+|||+|||+|..+..+++.+. .+++|+|+++. ...+..+|+.++|+++++||+|+++ +++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 3678999999999999988877543 37999998631 2356788999999988999999985 788
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccCc-------------------CcCC-C-----------CCCCChhHHHHH
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------DKYS-A-----------NDLFSVKPLVKL 226 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------~~y~-~-----------~~~~s~~~l~~l 226 (258)
|..++..+++++.++|||||++++........ ..+. . ..+++.+++.++
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAM 197 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999998753211110 0000 0 123477889999
Q ss_pred hhcCceEEe--eeecCCCCeEEEEEEe
Q 025071 227 FRESELVAV--RKVDGFGLDTEVVFRK 251 (258)
Q Consensus 227 f~~~~~~~v--~~v~g~~l~~~~~f~K 251 (258)
+.+.|+..+ +.+ .+++...++.||
T Consensus 198 l~~aGf~~~~~~~~-~~~~~~~~~~~~ 223 (223)
T TIGR01934 198 LKEAGFEEVRYRSL-TFGVAAIHVGKK 223 (223)
T ss_pred HHHcCCccceeeee-ecceeeEEEecC
Confidence 999997644 443 556666777664
No 32
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.53 E-value=4.9e-13 Score=115.62 Aligned_cols=107 Identities=16% Similarity=0.107 Sum_probs=81.9
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
..++++.+|||+|||+|..+..++. .+..+|+|+|.++. ...++++|+.+++. +++||+|+++
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence 3455688999999999999888775 33458999998742 13468889988887 7899999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
.+ .++..++++++|+|||||++++..... ...++.++.+..|+.
T Consensus 120 ~~---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------~~~~l~~~~~~~~~~ 163 (187)
T PRK00107 120 AV---ASLSDLVELCLPLLKPGGRFLALKGRD------------PEEEIAELPKALGGK 163 (187)
T ss_pred cc---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------hHHHHHHHHHhcCce
Confidence 53 357789999999999999999875421 235567777766754
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.52 E-value=5.3e-14 Score=116.13 Aligned_cols=89 Identities=29% Similarity=0.473 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCCHHHHHHH-hcC-CCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEec-
Q 025071 115 NESKALSIGARVGQEVAALK-LVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFSN- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~-~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s~- 174 (258)
.+.+|||+|||+|..+..|+ +.+ ..+++|+|+++. ...+.++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 56799999999999999998 443 358999998742 1357889999988 77 899999995
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+++|..++..+++++.|+|||||.+++...
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 788999999999999999999999988754
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=1.7e-13 Score=119.55 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=89.6
Q ss_pred EEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 118 KALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
+|||||||+|..+..+++. +..+|+|+|+++. ...+..+|..+.|++ ++||+|++. +++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 7999999999998888764 3357999998742 124567788777776 489999995 88999
Q ss_pred CChHHHHHHHHhcccCCcEEEEEeccccC----cCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLHVALSRR----ADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~v~~~~~----~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
.++..+++++.|+|||||++++....... ........+.+..++.+++.+.|+..+...
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 99999999999999999999987542110 011111224578889999999987665544
No 35
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.51 E-value=4.2e-14 Score=123.58 Aligned_cols=88 Identities=19% Similarity=0.316 Sum_probs=75.0
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CC---ceeeecCCCCC-CCCCCeeEEEec-cccc
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PP---LVIKGDFHAQP-FDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~---~~~~aDa~~LP-f~d~SFD~V~s~-~l~h 178 (258)
..||+||||||.+..++.-.....|+++|.++. +. .++.|+++++| .+|+|+|+|++. +++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 457999999999988876444458999998642 11 27899999999 999999999997 8999
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEec
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
..+|.+.++|+.|+|||||++++...
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999999999999999999988743
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.50 E-value=8.4e-13 Score=113.34 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
++.+|||+|||+|..+..++..+ ..+|+|+|.++. ...++++|+++++ .+++||+|+++.++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~~~- 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRALA- 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehhhh-
Confidence 47899999999999988877643 357999998752 1246788998875 36799999997533
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc---CceEEeeeecCCCCeEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE---SELVAVRKVDGFGLDTEVVF 249 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~---~~~~~v~~v~g~~l~~~~~f 249 (258)
+....++++.|+|||||.+++..... ...++..+.++ +|+..+.....++-++.+++
T Consensus 120 --~~~~~~~~~~~~LkpgG~lvi~~~~~------------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 179 (181)
T TIGR00138 120 --SLNVLLELTLNLLKVGGYFLAYKGKK------------YLDEIEEAKRKCQVLGVEPLEVPPLTGPDRHLVI 179 (181)
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEcCCC------------cHHHHHHHHHhhhhcCceEeeccccCCCceEEEE
Confidence 45677889999999999998864321 23445555444 66665555433333455554
No 37
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.50 E-value=2e-13 Score=117.36 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=94.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------CCceeeecCCC-C-CCCCCCeeEEEec-cccccCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------PPLVIKGDFHA-Q-PFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------~~~~~~aDa~~-L-Pf~d~SFD~V~s~-~l~h~~~ 181 (258)
+.++.+|||+|||+|..+..+++.+...++|+|+++. ...++++|+.+ + ++++++||+|+++ +++|+.+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 4567899999999999998887654347899998753 23467788865 5 4889999999996 8999999
Q ss_pred hHHHHHHHHhcccCCcEEEEEecccc------------Cc---C--cC-----CCCCCCChhHHHHHhhcCceE--Eeee
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALSR------------RA---D--KY-----SANDLFSVKPLVKLFRESELV--AVRK 237 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~~------------~~---~--~y-----~~~~~~s~~~l~~lf~~~~~~--~v~~ 237 (258)
+..+++|+.|+++++ ++.++... .. . .| ...++++.+++.++++++|+. ....
T Consensus 91 ~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~ 167 (194)
T TIGR02081 91 PEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAA 167 (194)
T ss_pred HHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEE
Confidence 999999999987653 33332210 00 0 01 112467899999999999965 4455
Q ss_pred ecCCCCe
Q 025071 238 VDGFGLD 244 (258)
Q Consensus 238 v~g~~l~ 244 (258)
++++++.
T Consensus 168 ~~~~~~~ 174 (194)
T TIGR02081 168 FDVDGRG 174 (194)
T ss_pred ecccccc
Confidence 6777776
No 38
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.50 E-value=4e-13 Score=118.68 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=87.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------------------CceeeecCCCCCCCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------------------PLVIKGDFHAQPFDN 165 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------------------~~~~~aDa~~LPf~d 165 (258)
..++++|||+|||.|..+.+|++.|+ +|+|+|+++.. ..+.++|+.+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45678999999999999999999997 79999987421 124678888886554
Q ss_pred -CCeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEE-ec-cccCcCcCCCCCCCChhHHHHHhhc-CceEEeee
Q 025071 166 -GTFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLH-VA-LSRRADKYSANDLFSVKPLVKLFRE-SELVAVRK 237 (258)
Q Consensus 166 -~SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~-v~-~~~~~~~y~~~~~~s~~~l~~lf~~-~~~~~v~~ 237 (258)
..||+|+.. +++|++. ..++++.+.++|||||.+++. .. ...+... ....++.+++.++|.. .++..+..
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~g--Pp~~~~~~el~~~~~~~~~i~~~~~ 190 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAG--PPFSVSDEEVEALYAGCFEIELLER 190 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCC--CCCCCCHHHHHHHhcCCceEEEeee
Confidence 689999985 5666652 246789999999999964443 21 1111111 1235689999999987 46655443
No 39
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.49 E-value=3.2e-13 Score=118.38 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=72.2
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----CCceeeecCCCCC--------CCCCCeeEEEec-c
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----PPLVIKGDFHAQP--------FDNGTFDFEFSN-V 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----~~~~~~aDa~~LP--------f~d~SFD~V~s~-~ 175 (258)
..+.++.+|||+|||||..+..+++. + ...|+|+|+++. ...++++|+.+.+ +.+++||+|+|+ +
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 34578889999999999999888764 2 247999999752 2357889988864 788999999996 3
Q ss_pred ccccCCh-----------HHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHALYP-----------WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~~p-----------~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.++..++ ..+++++.|+|||||.+++.+.
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3332222 3578999999999999999653
No 40
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.49 E-value=2.6e-13 Score=122.77 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C---CCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEecccccc
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G---VSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g---~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~ 179 (258)
..+.+|||+|||+|..+..+++. + ...++|+|+++. ...+.++|+.++||++++||+|++...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 34578999999999999888753 1 136899999752 234788999999999999999998421
Q ss_pred CChHHHHHHHHhcccCCcEEEEEecc
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
| ..++|+.|+|||||++++..+.
T Consensus 161 --~-~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 --P-CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred --C-CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2358999999999999987664
No 41
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.48 E-value=1.2e-13 Score=107.10 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC----------------CCceeeecC-CCCCCCCCCeeEEEecc-
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR----------------PPLVIKGDF-HAQPFDNGTFDFEFSNV- 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~----------------~~~~~~aDa-~~LPf~d~SFD~V~s~~- 175 (258)
++.+|||||||+|..+.++++ .+..+|+|+|+++. ...++++|+ ....+. +.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 468999999999999999988 23458999998742 224778888 334433 4599999953
Q ss_pred -cccc---CChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 -FDHA---LYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 -l~h~---~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++. .++.++++++.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3323 345678999999999999999864
No 42
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.47 E-value=2.2e-12 Score=113.09 Aligned_cols=130 Identities=20% Similarity=0.193 Sum_probs=88.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERT 192 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RV 192 (258)
+++..|-|+|||.+.++..+.. + ..|.-.|+......+..+|..++|.+|++.|+++.+ +|- ..+-..+++|.+||
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~-~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~Rv 147 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-K-HKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRV 147 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHhccc-C-ceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHhe
Confidence 4457899999999999977652 2 269999998777789999999999999999999874 321 23556789999999
Q ss_pred ccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCCcC
Q 025071 193 LKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKKK 255 (258)
Q Consensus 193 LKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~~~ 255 (258)
|||||.+.|..-.+ ++-+.+...+.+++.|+..............+.|+|.+++
T Consensus 148 LK~~G~L~IAEV~S---------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~~~ 201 (219)
T PF05148_consen 148 LKPGGILKIAEVKS---------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIRKK 201 (219)
T ss_dssp EEEEEEEEEEEEGG---------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-SSS
T ss_pred eccCcEEEEEEecc---------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcCcc
Confidence 99999999974332 3336788999999999987776555677789999996654
No 43
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.47 E-value=5.1e-13 Score=121.83 Aligned_cols=127 Identities=25% Similarity=0.267 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d 165 (258)
.++.+++...+++|.+|||||||-|..+.++++. |+ +|+|+.+|+. ...+..+|..+++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~-- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG-- 126 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--
Confidence 4555566667889999999999999999999876 75 8999998742 12356677776654
Q ss_pred CCeeEEEe-ccccccC--ChHHHHHHHHhcccCCcEEEEEeccccCc--------C-----c--CCCCCCCChhHHHHHh
Q 025071 166 GTFDFEFS-NVFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRA--------D-----K--YSANDLFSVKPLVKLF 227 (258)
Q Consensus 166 ~SFD~V~s-~~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~--------~-----~--y~~~~~~s~~~l~~lf 227 (258)
+||.|+| .+++|+. +-..+++++.|+|||||+++++..+.... . + ++...+.+..++...+
T Consensus 127 -~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 127 -KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred -CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 9999999 5899984 44788999999999999998874332110 0 1 2444556888899888
Q ss_pred hcCceE
Q 025071 228 RESELV 233 (258)
Q Consensus 228 ~~~~~~ 233 (258)
.+.++.
T Consensus 206 ~~~~l~ 211 (273)
T PF02353_consen 206 EDAGLE 211 (273)
T ss_dssp HHTT-E
T ss_pred hcCCEE
Confidence 887765
No 44
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=1.9e-12 Score=115.05 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=89.5
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------CCceeeecCCC----CCCCCCCeeEEE
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------PPLVIKGDFHA----QPFDNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------~~~~~~aDa~~----LPf~d~SFD~V~ 172 (258)
..+.++.+|||+|||+|..+..+++. +...|+|+|+++. ....+.+|+.. .++. ++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence 34678899999999999999998874 3247999999752 12456677764 1223 5799999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCC---eEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGL---DTEVVF 249 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l---~~~~~f 249 (258)
+. +........+++|++|+|||||.+++.++.......-..... .++..+++++.|+..+..++-... .-.+++
T Consensus 147 ~d-~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~--~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 147 QD-VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEI--FKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred EC-CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHH--HHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEE
Confidence 74 211111234589999999999999997553211001111111 244569999999888877764444 246777
Q ss_pred Ee
Q 025071 250 RK 251 (258)
Q Consensus 250 ~K 251 (258)
+|
T Consensus 224 ~~ 225 (226)
T PRK04266 224 RK 225 (226)
T ss_pred Ec
Confidence 65
No 45
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.45 E-value=1.1e-12 Score=116.22 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=90.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc---CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV---GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~---g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
+.++.+|||+|||+|..+..+++. +..+++|+|+++. ...++++|+..+|+++ +|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEee
Confidence 457789999999999998888763 2347999998642 1247889999998864 899888
Q ss_pred c-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccC-----------------cCcCC-------------CCCCCCh
Q 025071 174 N-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRR-----------------ADKYS-------------ANDLFSV 220 (258)
Q Consensus 174 ~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~-----------------~~~y~-------------~~~~~s~ 220 (258)
+ +++|+. ++..++++++|+|||||.+++....... ...+. ....++.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 5 677765 3467899999999999999987431100 01111 1123688
Q ss_pred hHHHHHhhcCceEEeeee
Q 025071 221 KPLVKLFRESELVAVRKV 238 (258)
Q Consensus 221 ~~l~~lf~~~~~~~v~~v 238 (258)
+++.++++++|+.++..+
T Consensus 209 ~~~~~~l~~aGF~~~~~~ 226 (239)
T TIGR00740 209 ETHKARLKNVGFSHVELW 226 (239)
T ss_pred HHHHHHHHHcCCchHHHH
Confidence 999999999998766543
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.45 E-value=7.8e-13 Score=128.09 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=90.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCC--CCCCCCCCeeEEEec-ccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFH--AQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~--~LPf~d~SFD~V~s~-~l~ 177 (258)
.++.+|||||||+|..+..|++.+ .+|+|+|+++. ...++++|+. .+|+++++||+|+++ +++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 356799999999999999998875 48999998642 1236778875 578999999999996 788
Q ss_pred ccCCh--HHHHHHHHhcccCCcEEEEEeccccCc-C--cC-CCCCCCChhHHHHHhhcCceEEe
Q 025071 178 HALYP--WKFVGEIERTLKPAGVCVLHVALSRRA-D--KY-SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 178 h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~-~--~y-~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
|+.++ ..++++++|+|||||++++.-...... + .. ...+..+.....++|.++++...
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 88763 578999999999999998864322111 1 11 22233467788999999886644
No 47
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.44 E-value=9.7e-13 Score=119.20 Aligned_cols=90 Identities=23% Similarity=0.229 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCCCHH----HHHHHhcC------CCcEEEEeCCCC----------------------------------
Q 025071 114 FNESKALSIGARVGQE----VAALKLVG------VSDSIGIDLVPR---------------------------------- 149 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~----~~~L~~~g------~~~v~GvD~s~~---------------------------------- 149 (258)
.++.+|||+|||||.. +..|++.+ ...|+|+|+++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999974 33444421 137999998641
Q ss_pred --------CCceeeecCCCCCCCCCCeeEEEe-ccccccCChH--HHHHHHHhcccCCcEEEEEe
Q 025071 150 --------PPLVIKGDFHAQPFDNGTFDFEFS-NVFDHALYPW--KFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 150 --------~~~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v 203 (258)
...+.++|+.+.|+++++||+|+| +++.|+.++. +++++++|+|||||++++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 123567888888888999999999 5888886444 69999999999999999853
No 48
>PRK06202 hypothetical protein; Provisional
Probab=99.43 E-value=6.3e-13 Score=117.17 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHh----cCC-CcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKL----VGV-SDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~----~g~-~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
.++.+|||+|||+|..+..|++ .|. .+++|+|+++. ...+.++++..+|+++++||+|+++ +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 4567999999999998887764 242 37999998752 1235667888889889999999997 8
Q ss_pred ccccCChH--HHHHHHHhcccCCcEEEEE-ecccc-------------------CcCc-CCCCCCCChhHHHHHhhcCce
Q 025071 176 FDHALYPW--KFVGEIERTLKPAGVCVLH-VALSR-------------------RADK-YSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 176 l~h~~~p~--~~l~Ei~RVLKPGG~lii~-v~~~~-------------------~~~~-y~~~~~~s~~~l~~lf~~~~~ 232 (258)
++|+.+++ .+++|++|++| |.+++. ..... +.+. .+....|+.+++.+++++ |+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 99998764 68999999998 444443 21110 0011 122346899999999998 76
Q ss_pred EEee
Q 025071 233 VAVR 236 (258)
Q Consensus 233 ~~v~ 236 (258)
....
T Consensus 216 ~~~~ 219 (232)
T PRK06202 216 RVER 219 (232)
T ss_pred eEEe
Confidence 5433
No 49
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=1.3e-12 Score=116.84 Aligned_cols=124 Identities=21% Similarity=0.246 Sum_probs=87.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc---CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV---GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~---g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
+.++.+|||||||+|..+..+++. +..+++|+|+++. ...++++|+.++|+++ +|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEeh
Confidence 457789999999999998877652 2358999998742 2346788999988864 899998
Q ss_pred c-cccccCC--hHHHHHHHHhcccCCcEEEEEeccccC-----------------cCcCCC-----------CC--CCCh
Q 025071 174 N-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRR-----------------ADKYSA-----------ND--LFSV 220 (258)
Q Consensus 174 ~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~-----------------~~~y~~-----------~~--~~s~ 220 (258)
+ +++|+.. ...+++|++|+|||||.+++....... ...|+. +. ..+.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 6 6777653 356889999999999999886321100 001110 11 1477
Q ss_pred hHHHHHhhcCceEEeeee
Q 025071 221 KPLVKLFRESELVAVRKV 238 (258)
Q Consensus 221 ~~l~~lf~~~~~~~v~~v 238 (258)
++..++++++|+.++..+
T Consensus 212 ~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 212 ETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHcCchhHHHH
Confidence 888888888888766543
No 50
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.41 E-value=3.2e-13 Score=103.32 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=49.6
Q ss_pred EEECCCCCHHHHHHHhc-CCCcEEEEeCCCCCCc---------------eeeecCCCCC-C-CCCCeeEEEec-cccccC
Q 025071 120 LSIGARVGQEVAALKLV-GVSDSIGIDLVPRPPL---------------VIKGDFHAQP-F-DNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 120 LDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~~~---------------~~~aDa~~LP-f-~d~SFD~V~s~-~l~h~~ 180 (258)
||||||+|..+..+.+. ...+++|+|+|+.... ....+..+.. . ..++||+|++. +++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999888764 3458999999875321 1222222211 1 12599999994 899999
Q ss_pred ChHHHHHHHHhcccCCcEE
Q 025071 181 YPWKFVGEIERTLKPAGVC 199 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~l 199 (258)
++..+++.++++|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 51
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.41 E-value=2.4e-12 Score=112.43 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=81.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccC
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
+.++.+|||||||+|..+..|++. +..+++|+|+++. ...+.++|+.+ |+++++||+|+++ +++|+.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 456778999999999999999875 4458999999752 13467889888 9999999999996 788875
Q ss_pred --ChHHHHHHHHhcccCCcEEEEEecccc--CcCcCCC--CCCC--C-hhHHHHHhhcCceEE
Q 025071 181 --YPWKFVGEIERTLKPAGVCVLHVALSR--RADKYSA--NDLF--S-VKPLVKLFRESELVA 234 (258)
Q Consensus 181 --~p~~~l~Ei~RVLKPGG~lii~v~~~~--~~~~y~~--~~~~--s-~~~l~~lf~~~~~~~ 234 (258)
+..++++|+.|++ ++.+++...... ....|.. .+.| + .+++.+++.+..+++
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~~l~~~~ 180 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMDRYPDLKLVD 180 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHHHHhCCcceeee
Confidence 2356789999998 456655421110 0012211 1122 1 366777777765554
No 52
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.40 E-value=8e-12 Score=108.66 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=89.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCC-CCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDN-GTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d-~SFD~V~s~-~l~ 177 (258)
.+.+|||+|||+|..+..+++.+. .++|+|+++. ...+..+|+.+++... ++||+|+++ .++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 467999999999999988887765 6999998642 1234567777777653 899999995 789
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccC------------c------CcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRR------------A------DKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~------------~------~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|..++..+++++.++|+|||.+++....... . .......+++..++.+++.+.|+.-+.
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 9999999999999999999998876532110 0 000111345778899999999865443
No 53
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.40 E-value=4e-12 Score=110.52 Aligned_cols=119 Identities=21% Similarity=0.317 Sum_probs=80.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
..+++++||+|||.|+++.+|++.|+ +|+++|.++. .....++|.++..++ +.||+|++. ++.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~ 105 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFM 105 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGG
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEec
Confidence 34678999999999999999999998 7999998742 223567888888875 689999985 555
Q ss_pred ccCCh--HHHHHHHHhcccCCcEEEEEeccccCcCcC----CCCCCCChhHHHHHhhcCceEEe
Q 025071 178 HALYP--WKFVGEIERTLKPAGVCVLHVALSRRADKY----SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 178 h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y----~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
|+..+ ...++.|...++|||+.++...... +.| +....+...|+...|..-+++..
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~--~d~p~~~~~~f~~~~~EL~~~y~dW~il~y 167 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVTFMET--PDYPCPSPFPFLLKPGELREYYADWEILKY 167 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB----SSS--SS--S--B-TTHHHHHTTTSEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc--CCCCCCCCCCcccCHHHHHHHhCCCeEEEE
Confidence 55432 3578999999999999877532221 112 11223567889999997776643
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.39 E-value=6.2e-12 Score=119.66 Aligned_cols=122 Identities=25% Similarity=0.328 Sum_probs=85.4
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC------------CceeeecCCCCCCCCCCeeE
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP------------PLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~------------~~~~~aDa~~LPf~d~SFD~ 170 (258)
++.+++...+.++.+|||||||+|..+..+++. |. +|+|+|+++.. ..+..+|...+ +++||.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCE
Confidence 334444445678899999999999999988864 54 89999997531 12445566554 579999
Q ss_pred EEec-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccC----cC----cC--CCCCCCChhHHHHHhhc
Q 025071 171 EFSN-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRR----AD----KY--SANDLFSVKPLVKLFRE 229 (258)
Q Consensus 171 V~s~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~----~~----~y--~~~~~~s~~~l~~lf~~ 229 (258)
|++. .++|+. ++..+++++.|+|||||+++++...... .+ +| +...+.+.+++.+.++.
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~~ 303 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASEG 303 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHHC
Confidence 9985 788875 3568899999999999999987532211 11 22 22334577888887663
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.39 E-value=3.5e-13 Score=103.88 Aligned_cols=79 Identities=29% Similarity=0.506 Sum_probs=62.8
Q ss_pred EEEECCCCCHHHHHHHhc---CC-CcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEe-c-cccc
Q 025071 119 ALSIGARVGQEVAALKLV---GV-SDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFS-N-VFDH 178 (258)
Q Consensus 119 VLDIGcGtG~~~~~L~~~---g~-~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s-~-~l~h 178 (258)
|||+|||+|..+..+.+. |. .+++|+|+++. ...++++|+.++|+.+++||+|++ . +++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999998865 32 58999998642 346899999999999999999999 4 5888
Q ss_pred cCCh--HHHHHHHHhcccCCc
Q 025071 179 ALYP--WKFVGEIERTLKPAG 197 (258)
Q Consensus 179 ~~~p--~~~l~Ei~RVLKPGG 197 (258)
+.+. .++++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 6533 457899999999998
No 56
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.38 E-value=2.9e-13 Score=121.87 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=82.7
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------------CceeeecCCCCCCCCCCeeEEEec
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------------PLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------------~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
|.+|||+|||+|-++.-|++.| +.|+|||+++.. ..+...|++.+- +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 4679999999999999999999 489999986321 112333444332 349999995
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCc-------------------CcCCCCCCCChhHHHHHhhcCce
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------DKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
+++|+.+|+.++.-+.+.|||||.++++.-. |.. +.+.-..+.+..++.+++...+.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittin-rt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTIN-RTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehh-hhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 9999999999999999999999999997432 110 11122345688899999886654
No 57
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.37 E-value=8.9e-12 Score=109.42 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=91.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCC-CCCCCeeEEEec-cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQP-FDNGTFDFEFSN-VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LP-f~d~SFD~V~s~-~l 176 (258)
..++.+|||||||+|..+..+.+.+. .++|+|+++.. ..+..+++..++ ..++.||+|++. .+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 34678999999999999988888764 79999986421 124556666655 456899999985 78
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCc------------------CcCCCCCCCChhHHHHHhhcCceEEeee
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRA------------------DKYSANDLFSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~------------------~~y~~~~~~s~~~l~~lf~~~~~~~v~~ 237 (258)
+|..++..+++++.++|+|||.+++........ .......+++.+++.+++.+.|+..+..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 999999999999999999999998875421100 0001123468889999999999865543
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.37 E-value=1.9e-12 Score=112.64 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecC-CCCC--CCCCCeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDF-HAQP--FDNGTFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa-~~LP--f~d~SFD~V~s~~ 175 (258)
++.+|||+|||+|..+..+++. +..+++|+|+++. ...++++|+ +.++ +++++||.|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5679999999999999988764 3357999998752 124688898 7887 8899999999852
Q ss_pred cccc-C--------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 176 FDHA-L--------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 176 l~h~-~--------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
-..+ . ....++++++|+|||||.+++...... -..++.+.+.+.|+
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~-----------~~~~~~~~~~~~g~ 174 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG-----------YAEYMLEVLSAEGG 174 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH-----------HHHHHHHHHHhCcc
Confidence 1111 1 136788999999999999998754211 13556666666664
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.36 E-value=1.9e-11 Score=103.63 Aligned_cols=121 Identities=20% Similarity=0.159 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
++.+|||+|||+|..+..+++.+. +|+|+|+++.. ..+..+|..+.+ +++||+|+++ -+.+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 567899999999999999988775 89999987531 234667766544 4599999997 33333
Q ss_pred CC---------------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 180 LY---------------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 180 ~~---------------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
.+ ...+++++.|+|||||.+++..+... +..++.+++++.|+......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------GEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------ChHHHHHHHHhCCCeEEEEE
Confidence 21 24578999999999999988654211 25788899988886433322
Q ss_pred -cCCCCeEEEEE
Q 025071 239 -DGFGLDTEVVF 249 (258)
Q Consensus 239 -~g~~l~~~~~f 249 (258)
.++-+.+..+.
T Consensus 165 ~~~~~~~~~~~~ 176 (179)
T TIGR00537 165 ERGLFFEELFAI 176 (179)
T ss_pred EeecCceEEEEE
Confidence 35555444443
No 60
>PRK06922 hypothetical protein; Provisional
Probab=99.35 E-value=1.7e-12 Score=129.83 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------CCceeeecCCCCC--CCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------PPLVIKGDFHAQP--FDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~~~~~~aDa~~LP--f~d~SFD~V~s~-~ 175 (258)
.++.+|||||||+|..+..+++. +..+++|+|+++. ...++++|+.++| |++++||+|+++ .
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 36789999999999998888763 3458999999752 1235778998998 899999999986 5
Q ss_pred ccccC-------------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHAL-------------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~~-------------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++|+. ++.+++++++|+|||||.+++..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 55542 45788999999999999999974
No 61
>PTZ00146 fibrillarin; Provisional
Probab=99.32 E-value=1.8e-11 Score=112.60 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=88.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC-------------CCceeeecCCC---CCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR-------------PPLVIKGDFHA---QPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~-------------~~~~~~aDa~~---LPf~d~SFD~V~s 173 (258)
.+.++.+|||+|||+|..+..+++. | ...|+++|+++. ....+.+|+.. .++..++||+|++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 4678899999999999999998875 3 247999998742 12356677653 2224568999999
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeec--CCCCe-EEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVD--GFGLD-TEVVFR 250 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~--g~~l~-~~~~f~ 250 (258)
.+. ...+...++.|+.|+|||||.+++.+.........+.+..++ +++ +++++.++..+..++ .+.-+ ..|+-+
T Consensus 209 Dva-~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~~L~~~GF~~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 209 DVA-QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-QKLKKEGLKPKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred eCC-CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-HHHHHcCCceEEEEecCCccCCcEEEEEE
Confidence 642 222334566799999999999999653221111112223333 444 788888877666654 34444 344444
Q ss_pred eC
Q 025071 251 KK 252 (258)
Q Consensus 251 K~ 252 (258)
++
T Consensus 286 ~~ 287 (293)
T PTZ00146 286 YR 287 (293)
T ss_pred Ec
Confidence 43
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.32 E-value=2.1e-11 Score=95.45 Aligned_cols=89 Identities=20% Similarity=0.139 Sum_probs=66.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCC-CCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHA-QPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~-LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||+|||+|..+..+++. +..+|+|+|.++. ...++.+|+.. ++...++||.|++.
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 3456789999999999999988774 3357999998642 12345566654 44555799999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
...+ ...++++++|+|||||.+++.+
T Consensus 96 ~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 3332 3578999999999999999865
No 63
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.32 E-value=4.9e-11 Score=104.14 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=83.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
..++.+|||+|||+|..+..+++.+. .|+|+|+++. ...+.++|+++++ ++||+|++. +
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 34678999999999999999988764 8999998742 1246778888776 799999985 6
Q ss_pred ccccC--ChHHHHHHHHhcccCCcEEEEEecccc-----C-cCcC------CCCCCCChhHHHHHhhcCceEEe
Q 025071 176 FDHAL--YPWKFVGEIERTLKPAGVCVLHVALSR-----R-ADKY------SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 176 l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~-----~-~~~y------~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
++|.. +...+++++.|++++|+.+.+...... . ...+ .....++.+++.+++++.|+..+
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 202 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV 202 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee
Confidence 77765 345788999999997766554311100 0 0011 11223588999999999886543
No 64
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.31 E-value=3.9e-11 Score=108.17 Aligned_cols=126 Identities=18% Similarity=0.165 Sum_probs=96.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERT 192 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RV 192 (258)
+....|-|+|||.+.++. .. ...|+..|+......++.+|..++|.+|+|.|+++++ +| ...+-..+++|++||
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSL-Mgtn~~df~kEa~Ri 253 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSL-MGTNLADFIKEANRI 253 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhh-hcccHHHHHHHHHHH
Confidence 456789999999998765 11 2479999998777788999999999999999998875 22 223667889999999
Q ss_pred ccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCC
Q 025071 193 LKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKK 253 (258)
Q Consensus 193 LKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~ 253 (258)
|||||.++|..-. .++-+..++.+.+..+|+........-...+.+.|+|..
T Consensus 254 Lk~gG~l~IAEv~---------SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 254 LKPGGLLYIAEVK---------SRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred hccCceEEEEehh---------hhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 9999999997432 234467888999999998654443344455789999854
No 65
>PLN03075 nicotianamine synthase; Provisional
Probab=99.31 E-value=6.1e-11 Score=109.31 Aligned_cols=133 Identities=15% Similarity=0.107 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCCHHHHH-HH-hc-CCCcEEEEeCCCC-----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAA-LK-LV-GVSDSIGIDLVPR-----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~-L~-~~-g~~~v~GvD~s~~-----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
++.+|+|||||.|..+.. ++ .. ....++|+|+++. ...+.++|+.+++-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998855433 22 33 2346999998641 1347788887765345789999998
Q ss_pred ccccc--CChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeC
Q 025071 175 VFDHA--LYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKK 252 (258)
Q Consensus 175 ~l~h~--~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~ 252 (258)
++.++ .++.+++++++|+|||||.+++-.+..-+.-- |..-+. +.++..+...+.+-.+.-..+.++.||+
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~L------Yp~v~~-~~~~gf~~~~~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFL------YPVVDP-CDLRGFEVLSVFHPTDEVINSVIIARKP 275 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhc------CCCCCh-hhCCCeEEEEEECCCCCceeeEEEEEee
Confidence 77777 58999999999999999999996532211112 211111 1222233333333344455578888886
Q ss_pred Cc
Q 025071 253 KK 254 (258)
Q Consensus 253 ~~ 254 (258)
+.
T Consensus 276 ~~ 277 (296)
T PLN03075 276 GG 277 (296)
T ss_pred cC
Confidence 54
No 66
>PRK14967 putative methyltransferase; Provisional
Probab=99.28 E-value=5.6e-11 Score=104.47 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec--cc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN--VF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l 176 (258)
+.++.+|||+|||+|..+..++..+..+++|+|+++. ...++.+|+.. ++++++||+|+++ ..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCC
Confidence 4567899999999999998888777558999998752 12356677655 4567899999996 22
Q ss_pred cccC--------------------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 177 DHAL--------------------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 177 ~h~~--------------------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.+.. ....+++++.++|||||++++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1111 024567899999999999988654
No 67
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=6.4e-11 Score=108.35 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCCC------------c-eeeecCCCCCCCCCCee
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRPP------------L-VIKGDFHAQPFDNGTFD 169 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~~------------~-~~~aDa~~LPf~d~SFD 169 (258)
++.+.+...+.+|.+|||||||-|..+.++++. | .+|+|+++|+... . -+..-....+.-++.||
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD 139 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD 139 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence 334444457889999999999999999998875 5 4899999985321 0 11122233444456699
Q ss_pred EEEe-ccccccCC--hHHHHHHHHhcccCCcEEEEEeccccC-c--------CcC--CCCCCCChhHHHHHhhcCceEEe
Q 025071 170 FEFS-NVFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRR-A--------DKY--SANDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 170 ~V~s-~~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~-~--------~~y--~~~~~~s~~~l~~lf~~~~~~~v 235 (258)
-|+| ..++|+-. -..+++.++++|+|||.++++.-..++ . .+| +...+.+..++.+.+.++++...
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~ 219 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVL 219 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEe
Confidence 9999 58899764 677899999999999999887443322 1 122 33445578888888888886543
No 68
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.27 E-value=8.5e-11 Score=100.55 Aligned_cols=93 Identities=25% Similarity=0.318 Sum_probs=68.9
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC----CCceeeecCCCCC--------CCCCCeeEEEecc-
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR----PPLVIKGDFHAQP--------FDNGTFDFEFSNV- 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~----~~~~~~aDa~~LP--------f~d~SFD~V~s~~- 175 (258)
..+.++.+|||+|||+|..+..+++. +..+|+|+|+++. ...++++|+.+.+ +++++||+|+++.
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 34678899999999999998877654 2346999999873 2245677877653 5678999999852
Q ss_pred --------ccccC---ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 --------FDHAL---YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 --------l~h~~---~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++|.. +.+.+++++.++|||||++++..
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 11111 12578899999999999999864
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=4.2e-11 Score=104.26 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=66.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
.+.++.+|||||||+|..+..+++. + ..+|+|+|+++. ...++.+|+.+.+..+++||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 3567789999999999999888763 2 247999998642 124677888876666789999999
Q ss_pred c-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 174 N-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 174 ~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+ +++|++ +|+.|+|||||++++.+.
T Consensus 149 ~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 149 TAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 6 566543 589999999999988553
No 70
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.25 E-value=8.6e-12 Score=97.57 Aligned_cols=89 Identities=28% Similarity=0.385 Sum_probs=68.6
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCC--CCCCCeeEEEec--c
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQP--FDNGTFDFEFSN--V 175 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LP--f~d~SFD~V~s~--~ 175 (258)
|.+|||+|||+|..+.++.+.+..+++|+|+++. +..+.++|...++ +++++||+|+++ .
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 4689999999999999888877558999998642 2357888888776 889999999997 2
Q ss_pred ccccC-------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHAL-------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~-------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
..+.. .-..+++++.|+|||||.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 22211 124678999999999999998865
No 71
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.25 E-value=2.9e-11 Score=108.34 Aligned_cols=125 Identities=16% Similarity=0.197 Sum_probs=82.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCc-----ee---eecCCCCCCCCCCeeEEEeccccccCChHH
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPL-----VI---KGDFHAQPFDNGTFDFEFSNVFDHALYPWK 184 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~-----~~---~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~ 184 (258)
..++.+|||+|||+|..+.++++.|...|+|+|+++.... .. ..+...++..+.+||+|+++...+ ....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~--~~~~ 194 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILAN--PLLE 194 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHH--HHHH
Confidence 4578899999999999998888888667999999754211 00 011122344444899999973322 1246
Q ss_pred HHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEe
Q 025071 185 FVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 185 ~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
.++++.++|||||.+++.-... ...+++.+.+.+.|+..+.....-+- ..++++|
T Consensus 195 l~~~~~~~LkpgG~lilsgi~~-----------~~~~~v~~~l~~~Gf~~~~~~~~~~W-~~~~~~~ 249 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGILE-----------EQADEVLEAYEEAGFTLDEVLERGEW-VALVGKK 249 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECcH-----------hhHHHHHHHHHHCCCEEEEEEEeCCE-EEEEEEe
Confidence 7799999999999999863210 13577888898888765544322122 4566665
No 72
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.25 E-value=6.5e-11 Score=110.15 Aligned_cols=107 Identities=19% Similarity=0.139 Sum_probs=80.3
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
....++.+|||+|||||..+..++..| ..++|+|+++. ...+.++|+.++|+.+++||+|+++
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECC
Confidence 345678899999999999987776666 47999998642 1246789999999999999999996
Q ss_pred --cc----ccc---CChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 175 --VF----DHA---LYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 175 --~l----~h~---~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
.. ... .....+++++.|+|||||++++.++.. .++.+++++.|+
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------~~~~~~~~~~g~ 309 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------IDLESLAEDAFR 309 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------CCHHHHHhhcCc
Confidence 11 111 113678899999999999999887631 234466777666
No 73
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.23 E-value=2.3e-10 Score=104.98 Aligned_cols=129 Identities=13% Similarity=0.046 Sum_probs=87.7
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC---------------CCCceeeecCCCCCCCCCCeeEE
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP---------------RPPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~---------------~~~~~~~aDa~~LPf~d~SFD~V 171 (258)
.+...+.++.+|||||||+|..+..+++. +..+++++|... ....++.+|+.+.++++ +|+|
T Consensus 142 ~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v 219 (306)
T TIGR02716 142 LEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAV 219 (306)
T ss_pred HHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEE
Confidence 33334567789999999999999888765 334799999621 01246788988777764 6998
Q ss_pred Eec-cccccCCh--HHHHHHHHhcccCCcEEEEEec--cccCcCcC--------------CCCCCCChhHHHHHhhcCce
Q 025071 172 FSN-VFDHALYP--WKFVGEIERTLKPAGVCVLHVA--LSRRADKY--------------SANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 172 ~s~-~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~--~~~~~~~y--------------~~~~~~s~~~l~~lf~~~~~ 232 (258)
++. .++++.+. .+++++++|+|||||++++.-. .......+ +.....+.+++.+++++.|+
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf 299 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGY 299 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCC
Confidence 774 56665443 3588999999999999988732 11111100 01122346889999999999
Q ss_pred EEeeee
Q 025071 233 VAVRKV 238 (258)
Q Consensus 233 ~~v~~v 238 (258)
..+..|
T Consensus 300 ~~v~~~ 305 (306)
T TIGR02716 300 KDVTMV 305 (306)
T ss_pred CeeEec
Confidence 877643
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=8.8e-11 Score=102.92 Aligned_cols=93 Identities=23% Similarity=0.236 Sum_probs=70.2
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCe
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SF 168 (258)
.+++...+.++.+|||||||+|..+..+++. +. .+|+|+|+++. ...++.+|+...+.+++.|
T Consensus 67 ~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 67 IMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCc
Confidence 3344445678899999999999999888764 32 47999998641 2357888988777788999
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|++. ++.+. .+++.+.|||||++++.+.
T Consensus 147 D~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 147 DRIYVTAAGPDI------PKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CEEEECCCcccc------hHHHHHhhCCCcEEEEEEc
Confidence 999985 45443 2578889999999988653
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.22 E-value=3.5e-11 Score=103.82 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCC---CCCCCeeEEEecc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQP---FDNGTFDFEFSNV 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LP---f~d~SFD~V~s~~ 175 (258)
+..+|||||||+|..+..+++. +..+++|+|++.. ...++++|+..++ +++++||.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4568999999999999888864 3458999998642 1246788887665 6678999999852
Q ss_pred ccccC---------ChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHAL---------YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~---------~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-+++. ....++++++|+|||||.+++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 11111 114688999999999999988753
No 76
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.21 E-value=1.9e-10 Score=99.11 Aligned_cols=124 Identities=23% Similarity=0.368 Sum_probs=91.7
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCc-EEEEeCCCC--------------C--CceeeecCCCCCCCCCCeeEEEe-cccc
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSD-SIGIDLVPR--------------P--PLVIKGDFHAQPFDNGTFDFEFS-NVFD 177 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~-v~GvD~s~~--------------~--~~~~~aDa~~LPf~d~SFD~V~s-~~l~ 177 (258)
..+|||+|||+|.+...|++.|+.. .+|+|.|+. + ..+.++|+..-.|..+.||+|+- +.++
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 4499999999999999999988754 999998642 1 34788888877888899999987 3332
Q ss_pred ccC--------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeec----CCCCe-
Q 025071 178 HAL--------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVD----GFGLD- 244 (258)
Q Consensus 178 h~~--------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~----g~~l~- 244 (258)
.+. .+..++.-+.+.|+|||+++|+. |. ++.+|+.+-|.+.++.-+.+|. .|+..
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN----------~T~dELv~~f~~~~f~~~~tvp~ptF~FgG~~ 215 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CN----------FTKDELVEEFENFNFEYLSTVPTPTFMFGGSV 215 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cC----------ccHHHHHHHHhcCCeEEEEeeccceEEecccc
Confidence 211 23456788999999999999963 21 2579999999999887666653 22222
Q ss_pred ----EEEEEEe
Q 025071 245 ----TEVVFRK 251 (258)
Q Consensus 245 ----~~~~f~K 251 (258)
+.++|++
T Consensus 216 G~tvt~vaF~~ 226 (227)
T KOG1271|consen 216 GSTVTSVAFLR 226 (227)
T ss_pred ccEEEEEEEec
Confidence 5788865
No 77
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.20 E-value=3.3e-10 Score=96.74 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=75.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEeccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
+.++.+|||+|||+|..+..+++.+ ..+|+|+|+++.. ..++.+|+. .++ +++||+|+++..
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCC
Confidence 4578899999999999998887653 3579999987421 234556653 344 368999998632
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
.+ .....++++.++|||||++++.... ..+..++.+++++.|+.
T Consensus 107 ~~--~~~~~l~~~~~~Lk~gG~lv~~~~~-----------~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 107 GG--NLTAIIDWSLAHLHPGGRLVLTFIL-----------LENLHSALAHLEKCGVS 150 (187)
T ss_pred cc--CHHHHHHHHHHhcCCCeEEEEEEec-----------HhhHHHHHHHHHHCCCC
Confidence 11 3466789999999999999885421 11357788888887753
No 78
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.20 E-value=1.4e-10 Score=103.33 Aligned_cols=119 Identities=14% Similarity=0.127 Sum_probs=85.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------------------CCceeeecCCCCCCCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------------------~~~~~~aDa~~LPf~d 165 (258)
..++++||+.|||.|..+.+|++.|+ +|+|+|+|+. ...+.++|+.+++...
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 44678999999999999999999998 6999998641 1246789999997522
Q ss_pred ---CCeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCC-CChhHHHHHhhcC-ceEE
Q 025071 166 ---GTFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDL-FSVKPLVKLFRES-ELVA 234 (258)
Q Consensus 166 ---~SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~-~s~~~l~~lf~~~-~~~~ 234 (258)
+.||+|+-. +|++++. ..++++.+.++|+|||.+++.+-...... ..-.+ -+.+++.++|... .+..
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~--~GPPf~v~~~e~~~lf~~~~~i~~ 194 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKS--QTPPYSVTQAELIKNFSAKIKFEL 194 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCC--CCCCCcCCHHHHHHhccCCceEEE
Confidence 689999984 6766652 24678999999999998877643221111 11111 3678999999754 4443
No 79
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.20 E-value=8.5e-10 Score=96.14 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=77.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
..++.+|||||||+|..+..|++.+. .|+|+|+++. ...+..+| ++..+++||+|++. +
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 34678999999999999999988775 6999998642 12344555 55667899999985 7
Q ss_pred ccccCCh--HHHHHHHHhcccCCcEEEEEeccccC-------c------CcCCCCCCCChhHHHHHhhcCceEE
Q 025071 176 FDHALYP--WKFVGEIERTLKPAGVCVLHVALSRR-------A------DKYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 176 l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~~~~~-------~------~~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
++|+.++ ..+++++.+.+++|+.+. ..+.... . ........++..++.+++.+.|+.-
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFT-FAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEE-ECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 7787644 357788888775444333 2221100 0 0001123457888999999888653
No 80
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.19 E-value=5.8e-11 Score=104.68 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCC----------CceeeecCCCCCCCCCCeeEEE
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRP----------PLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~----------~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
..+|++...+....+|.|+|||+|+.+..|++ .+.+.++|+|-|+.+ ..+.++|+.++- ++..+|+++
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLF 97 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhh
Confidence 44566655566788999999999999999986 466789999987532 247888888775 567899999
Q ss_pred ec-cccccCChHHHHHHHHhcccCCcEEEEEeccc
Q 025071 173 SN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALS 206 (258)
Q Consensus 173 s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~ 206 (258)
+| +|+++++-...+..+.--|.|||.+.+++|.+
T Consensus 98 aNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 98 ANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 97 78888888888999999999999999998854
No 81
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.18 E-value=3e-10 Score=98.13 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=77.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.+.++.+|||+|||+|..+..++.. + ..+|+++|+++. ...++.+|+.+ ++..+++||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 4668899999999999998877653 3 347999998642 12356677765 344457899999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
++. ...++..+++++.|+|||||++++.+.. ..+.+++.+.+++.|+
T Consensus 117 ~~~--~~~~~~~~l~~~~~~LkpgG~lv~~~~~-----------~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 117 IGG--GSEKLKEIISASWEIIKKGGRIVIDAIL-----------LETVNNALSALENIGF 163 (198)
T ss_pred ECC--CcccHHHHHHHHHHHcCCCcEEEEEeec-----------HHHHHHHHHHHHHcCC
Confidence 852 2346788999999999999999875431 1235677777877665
No 82
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.17 E-value=6.1e-10 Score=97.03 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=95.6
Q ss_pred HHHHHHHHhcccChhhHhhhCc-hhHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCC
Q 025071 69 ETYIQHQLNKTLNPKLRAVWTT-RDWERKVRVFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 69 ~~~l~~~l~~~l~~~l~~~W~~-~~w~~~~~~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s 147 (258)
.+++++++++ .+-|+. ..|.++.+. ..++.. ...-....++||+|||+|.++..|+... .+++++|++
T Consensus 6 ~~~l~~~la~------~DPW~~~~~~YE~~K~-~~~l~a---aLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis 74 (201)
T PF05401_consen 6 YQLLNRELAN------DDPWGFETSWYERRKY-RATLLA---ALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDIS 74 (201)
T ss_dssp HHHHHHHHTS------SSGGGTTT-HHHHHHH-HHHHHH---HHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-
T ss_pred HHHHHHHhCC------CCCCCCCCCHHHHHHH-HHHHHH---hcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCC
Confidence 3466677654 256865 355544321 222211 1112334689999999999999998874 689999987
Q ss_pred CC-------------CCceeeecCCCCCCCCCCeeEEEec-cccccCCh---HHHHHHHHhcccCCcEEEEEeccccCcC
Q 025071 148 PR-------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP---WKFVGEIERTLKPAGVCVLHVALSRRAD 210 (258)
Q Consensus 148 ~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p---~~~l~Ei~RVLKPGG~lii~v~~~~~~~ 210 (258)
+. ...+.++|..+ ..++++||+|+.. ++..+.+. ..++..+...|+|||.+++...-...
T Consensus 75 ~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~-- 151 (201)
T PF05401_consen 75 PRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN-- 151 (201)
T ss_dssp HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH--
T ss_pred HHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc--
Confidence 42 23467777755 3578999999885 55555432 35789999999999999986431100
Q ss_pred cCCCCCCCChhHHHHHhhcCceEEee--eecCCCCe---EEEEEEeCCc
Q 025071 211 KYSANDLFSVKPLVKLFRESELVAVR--KVDGFGLD---TEVVFRKKKK 254 (258)
Q Consensus 211 ~y~~~~~~s~~~l~~lf~~~~~~~v~--~v~g~~l~---~~~~f~K~~~ 254 (258)
...-.+.++.+.+.++|.+. ++.+. .++|-... -.+.|+|+..
T Consensus 152 c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 152 CRRWGHAAGAETVLEMLQEH-LTEVERVECRGGSPNEDCLLARFRNPVS 199 (201)
T ss_dssp HHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-SSTTSEEEEEEEE--SS
T ss_pred ccccCcccchHHHHHHHHHH-hhheeEEEEcCCCCCCceEeeeecCCcC
Confidence 00123455788999999843 33222 33332222 4778888654
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=99.16 E-value=7.3e-10 Score=93.21 Aligned_cols=108 Identities=23% Similarity=0.348 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------C---CceeeecCCCCCCCCCCeeEEEec-c
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------P---PLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~---~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
.++.+|||+|||+|..+..+++.+ .+++|+|+++. . ..++.+|..+ ++.+++||+|+++ .
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 467799999999999999988776 58999998642 1 3345666655 5566799999986 1
Q ss_pred ccc---------------------cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEE
Q 025071 176 FDH---------------------ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 176 l~h---------------------~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~ 234 (258)
+.+ ......+++++.++|||||.+++.++. ....+++.+++.+.|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~-----------~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS-----------LTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-----------cCCHHHHHHHHHHCCCee
Confidence 111 011345789999999999998887642 113477889999888643
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.16 E-value=1.6e-10 Score=110.07 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCC--CCCCCCeeEEEecc-
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQ--PFDNGTFDFEFSNV- 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~L--Pf~d~SFD~V~s~~- 175 (258)
.+..+||||||+|..+..+++. +...++|+|+++. ...++++|+..+ ++++++||.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4568999999999999999875 3458999998632 123678888765 68899999999851
Q ss_pred ccccCCh------HHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHALYP------WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~~p------~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
..|...+ ..+++|++|+|||||.+.+.+.
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 1111111 5789999999999999999754
No 85
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.16 E-value=3.5e-10 Score=100.82 Aligned_cols=124 Identities=24% Similarity=0.302 Sum_probs=95.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC----------CC-------CceeeecCCCC--CCCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP----------RP-------PLVIKGDFHAQ--PFDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~----------~~-------~~~~~aDa~~L--Pf~d~SFD~V~s 173 (258)
.+.+.+|||.+.|-|..+..-.+.|..+|+.++.++ ++ ..++.||+.+. .|+|+|||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 456899999999999999887788876888888543 11 13567787654 589999999998
Q ss_pred c--cccc--cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecC
Q 025071 174 N--VFDH--ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDG 240 (258)
Q Consensus 174 ~--~l~h--~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g 240 (258)
. -|.+ -.....+.+|++|+|||||.++..+.++ +.+|...|+ ..++.+.+++.|+..+..+..
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P--g~ryrG~d~--~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP--GKRYRGLDL--PKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC--CcccccCCh--hHHHHHHHHhcCceeeeeehh
Confidence 4 2322 2355788999999999999999988654 346666666 488999999999998887753
No 86
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.15 E-value=3.5e-10 Score=98.91 Aligned_cols=87 Identities=23% Similarity=0.208 Sum_probs=65.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGV--SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||||||+|..+..|++... ..|+|+|+++. ...++.+|+...+...+.||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 466889999999999999998887532 35999998642 1346778887765556799999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
...++ .+++.+.|||||++++.+.
T Consensus 154 ~~~~~~------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 154 AAGPKI------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred CCcccc------cHHHHHhcCcCcEEEEEEc
Confidence 44433 3578899999999988654
No 87
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.15 E-value=1.4e-09 Score=97.58 Aligned_cols=125 Identities=24% Similarity=0.368 Sum_probs=84.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec--
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-- 174 (258)
..++.+|||+|||+|..+..++... ...++|+|+++. ...++.+|+.. ++.+++||+|+++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCC
Confidence 3466799999999999999888753 357999998742 12356677643 4456899999985
Q ss_pred cc-----c--------c------------cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc
Q 025071 175 VF-----D--------H------------ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE 229 (258)
Q Consensus 175 ~l-----~--------h------------~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~ 229 (258)
.+ + | ......+++++.++|||||++++..... ..+++.+++.+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~------------~~~~~~~~l~~ 252 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD------------QGEAVRALLAA 252 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch------------HHHHHHHHHHh
Confidence 11 1 0 0012456788889999999999865311 23668888888
Q ss_pred CceEEeeee-cCCCCeEEEEEE
Q 025071 230 SELVAVRKV-DGFGLDTEVVFR 250 (258)
Q Consensus 230 ~~~~~v~~v-~g~~l~~~~~f~ 250 (258)
.|+..+... +-.+.++.++.+
T Consensus 253 ~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 253 AGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred CCCceeEEecCCCCCceEEEEE
Confidence 887655543 455666655544
No 88
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.14 E-value=9.5e-10 Score=96.91 Aligned_cols=111 Identities=22% Similarity=0.364 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec---c
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN---V 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~---~ 175 (258)
.+.+|||+|||+|..+..+++. +...++|+|+++. ...+..+|+.+ ++++++||+|+++ .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4568999999999999988874 3358999998642 12467778766 6778999999985 1
Q ss_pred ----ccccC------Ch--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 176 ----FDHAL------YP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 176 ----l~h~~------~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
++++. .| ..+++++.++|||||.+++.... ...+++.+++.+.|
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------------~~~~~~~~~l~~~g 233 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------------DQGEAVRALFEAAG 233 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc------------cHHHHHHHHHHhCC
Confidence 11111 11 24678999999999999886531 13467888898888
Q ss_pred eEEeeee
Q 025071 232 LVAVRKV 238 (258)
Q Consensus 232 ~~~v~~v 238 (258)
+..+...
T Consensus 234 f~~v~~~ 240 (251)
T TIGR03534 234 FADVETR 240 (251)
T ss_pred CCceEEE
Confidence 7655543
No 89
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.14 E-value=9e-10 Score=93.14 Aligned_cols=108 Identities=27% Similarity=0.393 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCC-cEEEEeCCCC--------------C-CceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVS-DSIGIDLVPR--------------P-PLVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~-~v~GvD~s~~--------------~-~~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
++.+|||+|||+|..+..+++.+.. +|+++|+++. . ..+..+|..+ +.++++||+|+|| =++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 5679999999999999999886543 6999998642 1 2355666543 4458999999997 222
Q ss_pred ccC-----ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 178 HAL-----YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 178 h~~-----~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
... ...+++++..+.|||||.+++..... .-..+-+.++|.+.+.+
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~----------~~~~~~l~~~f~~~~~~ 160 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH----------LGYERLLKELFGDVEVV 160 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT----------SCHHHHHHHHHS--EEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecC----------CChHHHHHHhcCCEEEE
Confidence 222 23567899999999999998765421 11123367777755543
No 90
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.14 E-value=2.1e-10 Score=105.03 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC----------------ceeeecCCCCCCCCCCeeEEEeccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP----------------LVIKGDFHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~----------------~~~~aDa~~LPf~d~SFD~V~s~~l 176 (258)
..++.+|||+|||+|..+.++++.|..+|+|+|+++... .+..++ ..++.+++||+|+++.+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecC
Confidence 346789999999999999888888877899999875210 122232 34555789999999743
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
.+ ....++.++.|+|||||++++..... ....++.+.+++.
T Consensus 235 ~~--~l~~ll~~~~~~LkpgG~li~sgi~~-----------~~~~~v~~~~~~~ 275 (288)
T TIGR00406 235 AE--VIKELYPQFSRLVKPGGWLILSGILE-----------TQAQSVCDAYEQG 275 (288)
T ss_pred HH--HHHHHHHHHHHHcCCCcEEEEEeCcH-----------hHHHHHHHHHHcc
Confidence 22 23467899999999999998853211 1246667777653
No 91
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.12 E-value=8.3e-11 Score=114.10 Aligned_cols=126 Identities=19% Similarity=0.208 Sum_probs=78.9
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCC-----CCC----------ceeeecCCCCCCCCCCeeEEEec-c-ccccC
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVP-----RPP----------LVIKGDFHAQPFDNGTFDFEFSN-V-FDHAL 180 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~-----~~~----------~~~~aDa~~LPf~d~SFD~V~s~-~-l~h~~ 180 (258)
.+||||||+|.++.+|.+.++ +.+-+++ ... .+-.....+|||++++||+|.|+ + +.+..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~ 196 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNV---TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHP 196 (506)
T ss_pred EEEeccceeehhHHHHhhCCc---eEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchh
Confidence 699999999999999998764 3333221 111 11122357999999999999995 3 44444
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCC-CChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCCc
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDL-FSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKK 254 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~-~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~~ 254 (258)
+-..++-|+.|||||||++++.-+... .....+. -.-..+..+.+...+..+.+-+ .+++.||+.+
T Consensus 197 ~~g~~l~evdRvLRpGGyfv~S~ppv~---~r~~~~~~~~~~~~~~l~~~lCW~~va~~~-----~~aIwqKp~~ 263 (506)
T PF03141_consen 197 NDGFLLFEVDRVLRPGGYFVLSGPPVY---QRTDEDLEEEWNAMEDLAKSLCWKKVAEKG-----DTAIWQKPTN 263 (506)
T ss_pred cccceeehhhhhhccCceEEecCCccc---ccchHHHHHHHHHHHHHHHHHHHHHheeeC-----CEEEEeccCC
Confidence 556678899999999999998754221 0001111 1124455666665554444321 1688888554
No 92
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.11 E-value=1.1e-09 Score=102.00 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------------CceeeecCCCCCCCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------------PLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------------~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
++.+|||+|||+|..+..|++.|. +|+|+|+++.. ..+.++|.+.+ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 567999999999999999998875 79999997521 12344554433 6899999985
Q ss_pred -cccccCChH--HHHHHHHhcccCCcEEEEEecccc------C-cCcC---CC---CCCCChhHHHHHhhcCceEE
Q 025071 175 -VFDHALYPW--KFVGEIERTLKPAGVCVLHVALSR------R-ADKY---SA---NDLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 175 -~l~h~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~------~-~~~y---~~---~~~~s~~~l~~lf~~~~~~~ 234 (258)
+++|.++.. ..++.+.+ +.+||.++...+... . ...+ .. ..+++.+++.++++++|+.-
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 778876543 34555554 456555443222110 0 0011 11 11347899999999999753
No 93
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.11 E-value=2.3e-09 Score=97.89 Aligned_cols=122 Identities=21% Similarity=0.211 Sum_probs=84.0
Q ss_pred CEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--cc-
Q 025071 117 SKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--VF- 176 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l- 176 (258)
.+|||+|||+|..+..++... ...|+|+|+++. ...++++|..+ ++++++||+|+++ .+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 689999999999999888753 357999998742 13466777654 5566689999996 11
Q ss_pred -----------cccC------------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhh-cCce
Q 025071 177 -----------DHAL------------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFR-ESEL 232 (258)
Q Consensus 177 -----------~h~~------------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~-~~~~ 232 (258)
.|-+ ....+++++.++|+|||++++.+... ..+.+.+++. +.++
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~------------q~~~~~~~~~~~~~~ 262 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW------------QQKSLKELLRIKFTW 262 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc------------HHHHHHHHHHhcCCC
Confidence 1111 23456789999999999998876421 1356777787 4566
Q ss_pred EEeeee-cCCCCeEEEEEEe
Q 025071 233 VAVRKV-DGFGLDTEVVFRK 251 (258)
Q Consensus 233 ~~v~~v-~g~~l~~~~~f~K 251 (258)
..+... |-.|.++.++.++
T Consensus 263 ~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 263 YDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred ceeEEecCCCCCceEEEEEe
Confidence 554433 5667777666554
No 94
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.10 E-value=3.4e-10 Score=100.12 Aligned_cols=126 Identities=20% Similarity=0.288 Sum_probs=82.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------------------Cceeee
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------------------PLVIKG 156 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------------------~~~~~a 156 (258)
+..+.+.....++.+||+.|||.|..+.+|++.|+ +|+|+|+|+.. ..+.++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 33333333456778999999999999999999997 89999987410 125678
Q ss_pred cCCCCCCCC-CCeeEEEec-cccccC--ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 157 DFHAQPFDN-GTFDFEFSN-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 157 Da~~LPf~d-~SFD~V~s~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
|+.+++-++ ++||+|+-. +|+-++ ...++.+.+.++|||||.+++.+-.......-..---.+.+++.++|...
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~ 182 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPG 182 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTT
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCC
Confidence 998888665 489999985 443332 33578899999999999944432222111110111114789999999833
No 95
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.09 E-value=1.5e-10 Score=97.17 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=68.8
Q ss_pred CceeeecCCCCCCCCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCc--------------------
Q 025071 151 PLVIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRA-------------------- 209 (258)
Q Consensus 151 ~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~-------------------- 209 (258)
..++++|++++|+++++||+|++. +++|+.++..+++|++|+|||||.+++......+.
T Consensus 28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (160)
T PLN02232 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVAT 107 (160)
T ss_pred eEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhH
Confidence 357899999999999999999996 78999999999999999999999998763221100
Q ss_pred -----CcC-----CCCCCCChhHHHHHhhcCceEEeeee
Q 025071 210 -----DKY-----SANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 210 -----~~y-----~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
..| +...+++.+++.++++++|+.++...
T Consensus 108 ~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 108 VYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred HhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 011 11234588999999999999877654
No 96
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1e-09 Score=101.30 Aligned_cols=125 Identities=21% Similarity=0.348 Sum_probs=84.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC------------c--eeeecCCCCCCCC-CCeeEEEecccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP------------L--VIKGDFHAQPFDN-GTFDFEFSNVFD 177 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~------------~--~~~aDa~~LPf~d-~SFD~V~s~~l~ 177 (258)
..++.+|||+|||+|-++.+.++.|...|+|+|+.+... . ....-...+.... +.||+|++|-+-
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 458899999999999999999999988899999865211 0 1111122223334 599999998432
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEe
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
+.. .+...++.+.|||||++++.--... -.+.+.+.+.+.|+..+.....-+- .++++||
T Consensus 240 ~vl--~~La~~~~~~lkpgg~lIlSGIl~~-----------q~~~V~~a~~~~gf~v~~~~~~~eW-~~i~~kr 299 (300)
T COG2264 240 EVL--VELAPDIKRLLKPGGRLILSGILED-----------QAESVAEAYEQAGFEVVEVLEREEW-VAIVGKR 299 (300)
T ss_pred HHH--HHHHHHHHHHcCCCceEEEEeehHh-----------HHHHHHHHHHhCCCeEeEEEecCCE-EEEEEEc
Confidence 221 3566899999999999999621110 1466888887777766665433222 5666665
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.08 E-value=1.6e-09 Score=101.80 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=65.0
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec-ccccc
Q 025071 116 ESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHA 179 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~ 179 (258)
.++|||+|||+|..+..+++.+ ..+|+++|+++. ...+..+|..+ ..+++||+|+|+ -+++.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 4689999999999999888753 347999998742 12245556543 236799999997 45442
Q ss_pred C-----ChHHHHHHHHhcccCCcEEEEEec
Q 025071 180 L-----YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 180 ~-----~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
. ..+.+++++.|.|||||.+++..+
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 346789999999999999988653
No 98
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.07 E-value=2.4e-09 Score=98.84 Aligned_cols=123 Identities=20% Similarity=0.351 Sum_probs=80.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
..++.+|||+|||+|-++.+.++.|..+|+|+|+.+.. ..+.... ......+.||+|++|-+.+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCHH
Confidence 45778999999999999998888998889999997531 1122222 2233458999999983322
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeC
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKK 252 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~ 252 (258)
.. ...+..+.++|||||++++.--.. + ..+++.+.+++ |+.-+.....-+- ..+++||+
T Consensus 237 vL--~~l~~~~~~~l~~~G~lIlSGIl~--------~---~~~~v~~a~~~-g~~~~~~~~~~~W-~~l~~~Kk 295 (295)
T PF06325_consen 237 VL--LELAPDIASLLKPGGYLILSGILE--------E---QEDEVIEAYKQ-GFELVEEREEGEW-VALVFKKK 295 (295)
T ss_dssp HH--HHHHHHCHHHEEEEEEEEEEEEEG--------G---GHHHHHHHHHT-TEEEEEEEEETTE-EEEEEEE-
T ss_pred HH--HHHHHHHHHhhCCCCEEEEccccH--------H---HHHHHHHHHHC-CCEEEEEEEECCE-EEEEEEeC
Confidence 21 345678999999999999962111 1 24778888876 8765444322122 56777763
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.03 E-value=2e-09 Score=93.57 Aligned_cols=86 Identities=20% Similarity=0.156 Sum_probs=63.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec-c
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
.+.++.+|||+|||+|..+..+++.+ .+|+++|.++. ...+..+|+.+.....++||+|++. .
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45678899999999999988887764 47999998632 1245667765432245799999985 4
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++++ .+++.+.|+|||++++.+.
T Consensus 154 ~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh------hHHHHHhcCCCcEEEEEEc
Confidence 4443 3578899999999998764
No 100
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.03 E-value=2.5e-09 Score=101.84 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=62.7
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC------------------CceeeecCCCCCCCCCCeeEEEec-c
Q 025071 116 ESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP------------------PLVIKGDFHAQPFDNGTFDFEFSN-V 175 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~------------------~~~~~aDa~~LPf~d~SFD~V~s~-~ 175 (258)
+++|||+|||+|..+..+++.+ ..+|+++|.++.. ..+..+|+.+ .+++++||+|+|| -
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 4699999999999999888753 4589999987421 1234455433 2355789999997 3
Q ss_pred cccc--C---ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHA--L---YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~--~---~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.. . ..+++++++.|+|||||.+++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3221 1 13467899999999999998875
No 101
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.02 E-value=1.6e-09 Score=79.53 Aligned_cols=85 Identities=32% Similarity=0.438 Sum_probs=65.9
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCC-CCCCeeEEEec-cccc-c
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPF-DNGTFDFEFSN-VFDH-A 179 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf-~d~SFD~V~s~-~l~h-~ 179 (258)
+|+|+|||+|..+..+.+.+..+++++|.++. ...+..+|..+.+. ..++||+|+++ .+++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 48999999999988887644468999998642 12355667666553 56789999996 5565 5
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+...++.+.+.|||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 67788899999999999999875
No 102
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.99 E-value=7.1e-10 Score=99.06 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=62.9
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------C-c-----eeeecCCCCCCC--CCCeeEEEeccccccCC
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------P-L-----VIKGDFHAQPFD--NGTFDFEFSNVFDHALY 181 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~-~-----~~~aDa~~LPf~--d~SFD~V~s~~l~h~~~ 181 (258)
.++|+|||+|+.+..+++. +.+|+|+|+++.+ + . ....+.+-.++. ++|.|+|+++.--|+.+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 7999999999888888876 5689999986421 1 1 112233445555 99999999974446667
Q ss_pred hHHHHHHHHhcccCCc-EEEEEe
Q 025071 182 PWKFVGEIERTLKPAG-VCVLHV 203 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG-~lii~v 203 (258)
-++++++++|||||.| .+++..
T Consensus 115 le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 115 LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hHHHHHHHHHHcCCCCCEEEEEE
Confidence 8899999999999987 555543
No 103
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.99 E-value=1.3e-08 Score=97.98 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=86.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------CCceeeecCCCCCC-CCCCeeEEEec--
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------PPLVIKGDFHAQPF-DNGTFDFEFSN-- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf-~d~SFD~V~s~-- 174 (258)
+.++.+|||+|||+|..+..++.. +..+|+|+|+++. ...++++|..+..+ .+++||+|+||
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence 345679999999999999888753 3458999999752 12367788755433 24689999996
Q ss_pred cccc----cC------Ch--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 175 VFDH----AL------YP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 175 ~l~h----~~------~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
.+.. .. +| .+.++++.+.|+|||.+++.+... ..+.+.+++.+.
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~------------Q~e~V~~ll~~~ 396 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD------------QGAAVRGVLAEN 396 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc------------HHHHHHHHHHHC
Confidence 2211 00 11 245677788999999988765421 247788999888
Q ss_pred ceEEeeee-cCCCCeEEEEEEe
Q 025071 231 ELVAVRKV-DGFGLDTEVVFRK 251 (258)
Q Consensus 231 ~~~~v~~v-~g~~l~~~~~f~K 251 (258)
|+..+... |-.|.++.++.++
T Consensus 397 Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 397 GFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred CCcEEEEEEcCCCCcEEEEEEE
Confidence 86544322 6777788776655
No 104
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.98 E-value=1.5e-08 Score=89.47 Aligned_cols=131 Identities=22% Similarity=0.326 Sum_probs=101.2
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCC---CCCCeeEEEec-cccccCChH---HHHHHH
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPF---DNGTFDFEFSN-VFDHALYPW---KFVGEI 189 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf---~d~SFD~V~s~-~l~h~~~p~---~~l~Ei 189 (258)
-++|||||=...+. ....++-+|+.||+++..+.+.+.|+.+.|. ++++||+|.+. +++.+++|. +.++.+
T Consensus 53 lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~ 130 (219)
T PF11968_consen 53 LRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRA 130 (219)
T ss_pred ceEEeecccCCCCc--ccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHH
Confidence 58999998755543 2344555799999998888899999999888 47899999986 889999886 478999
Q ss_pred HhcccCCcE-----EEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCCeEEEEEEeCCc
Q 025071 190 ERTLKPAGV-----CVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGLDTEVVFRKKKK 254 (258)
Q Consensus 190 ~RVLKPGG~-----lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l~~~~~f~K~~~ 254 (258)
++.|+|+|. +++..|.+ .....+..+.+.+..++...|+..+.......+ .-+.|||.+.
T Consensus 131 ~~fL~~~g~~~~~~LFlVlP~~----Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl-~y~l~r~~~~ 195 (219)
T PF11968_consen 131 HKFLKPPGLSLFPSLFLVLPLP----CVTNSRYMTEERLREIMESLGFTRVKYKKSKKL-AYWLFRKSGK 195 (219)
T ss_pred HHHhCCCCccCcceEEEEeCch----HhhcccccCHHHHHHHHHhCCcEEEEEEecCeE-EEEEEeecCC
Confidence 999999999 88877632 112233457788999999999999888655555 5777787655
No 105
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.96 E-value=2.8e-09 Score=94.40 Aligned_cols=88 Identities=32% Similarity=0.373 Sum_probs=68.0
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC----------ceeeec-CCCCCCCCCCeeEEEe-cc---ccccC
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP----------LVIKGD-FHAQPFDNGTFDFEFS-NV---FDHAL 180 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~----------~~~~aD-a~~LPf~d~SFD~V~s-~~---l~h~~ 180 (258)
+.-|||||||+|..+..|.+.| ...+|+|+|+.+. .++.+| .+-+||..++||.|++ .+ ++|..
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~ 129 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD 129 (270)
T ss_pred CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence 5679999999999999999888 4799999987532 123333 4789999999999998 33 33322
Q ss_pred ----ChHH----HHHHHHhcccCCcEEEEEec
Q 025071 181 ----YPWK----FVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 181 ----~p~~----~l~Ei~RVLKPGG~lii~v~ 204 (258)
+|.+ ++.-++.+|++|++.++++-
T Consensus 130 ~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 130 KSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred ccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 4543 56789999999999999853
No 106
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.95 E-value=1.1e-08 Score=93.76 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--c
Q 025071 115 NESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--V 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~ 175 (258)
++.+|||+|||+|..+..+++.. ..+|+|+|+++. ...++++|+.+ ++++++||+|+++ .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 45789999999999999998753 348999998742 12357777643 3456789999996 1
Q ss_pred -----cccc-----CCh--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 176 -----FDHA-----LYP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 176 -----l~h~-----~~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
+.+. .+| ..+++++.++|||||++++.+.. +.+.+.+++.+.+
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-------------~~~~v~~~~~~~~ 266 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-------------SMEALEEAYPDVP 266 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------------CHHHHHHHHHhCC
Confidence 1111 122 35678999999999999987641 2356778888766
Q ss_pred eE
Q 025071 232 LV 233 (258)
Q Consensus 232 ~~ 233 (258)
+.
T Consensus 267 ~~ 268 (284)
T TIGR03533 267 FT 268 (284)
T ss_pred Cc
Confidence 43
No 107
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.95 E-value=7.7e-09 Score=95.28 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=65.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCC-------------CC---ceeeecCCC-CCCCCCC----ee
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPR-------------PP---LVIKGDFHA-QPFDNGT----FD 169 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~-------------~~---~~~~aDa~~-LPf~d~S----FD 169 (258)
+.++.+|||+|||||..+..|.+.. ..+++|+|+|+. +. ..+++|+.+ +++..+. ..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 3567899999999999998887653 247999999752 11 246788875 4554433 23
Q ss_pred EEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEeccc
Q 025071 170 FEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVALS 206 (258)
Q Consensus 170 ~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~~ 206 (258)
+++++ .+.|+.. ...++++++++|+|||.+++.+...
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 44444 5555542 3457899999999999999876543
No 108
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.93 E-value=1e-08 Score=88.17 Aligned_cols=90 Identities=20% Similarity=0.068 Sum_probs=63.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCC-CCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHA-QPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~-LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||+|||+|..+..+++. +...|+|+|+++. ...++.+|+.+ ++.-...+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 3457789999999999998888753 2358999998742 12356677643 33222346776653
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
. ..+...+++++.|+|||||++++...
T Consensus 117 ~---~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 117 G---GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred C---CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 1 22456889999999999999988753
No 109
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.91 E-value=4.5e-08 Score=82.39 Aligned_cols=89 Identities=17% Similarity=0.055 Sum_probs=65.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEEeccccc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
.+.++.+|||+|||+|..+..+++.+ .+++|+|+++. ...++.+|+.++++++++||.|+++.--|
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 45567899999999999999998875 58999998641 23478899999999988899999973333
Q ss_pred cCChHHHHHHHHhc--ccCCcEEEEEe
Q 025071 179 ALYPWKFVGEIERT--LKPAGVCVLHV 203 (258)
Q Consensus 179 ~~~p~~~l~Ei~RV--LKPGG~lii~v 203 (258)
.. ...+..+.+- +.++|.+++..
T Consensus 89 ~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 89 IS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 32 2333333332 44778887764
No 110
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.91 E-value=1.3e-09 Score=103.30 Aligned_cols=91 Identities=30% Similarity=0.357 Sum_probs=79.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec-
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
...++.+++|+|||-|....+++..+...++|+|.+.+ ...++.+|+...||+|++||+|.+.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34577799999999999999998877678999998642 1236788999999999999999984
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.+|.+++..+++|++||+||||+.+.-
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 8999999999999999999999998885
No 111
>PHA03411 putative methyltransferase; Provisional
Probab=98.90 E-value=1.1e-08 Score=93.52 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec-cccccCC-
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN-VFDHALY- 181 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~- 181 (258)
.+++|||+|||+|..+..+... +..+|+|+|+++. ...++++|+.+++. +++||+|+++ -+.|...
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 4579999999999988777653 2358999998752 23477889887763 5789999997 3433211
Q ss_pred -------------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 182 -------------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 182 -------------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
-.+.++...++|+|+|.+.+..+..+ -| +.-.+.++...++++.|++
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~---~y--~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP---YY--DGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc---cc--cccCCHHHHHHHHHhcCcE
Confidence 13566788999999998777654321 12 1123678888999888876
No 112
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.90 E-value=2.9e-08 Score=89.46 Aligned_cols=129 Identities=17% Similarity=0.151 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCC--CCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQP--FDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LP--f~d~SFD~V~s~ 174 (258)
...++|||+|||+|..+..+++. ...+++|||+.+. ...++++|+.++. ..-++||+|+||
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 34789999999999999999875 4468999998642 2347788877654 334589999997
Q ss_pred --ccccc----C-------------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc--eE
Q 025071 175 --VFDHA----L-------------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE--LV 233 (258)
Q Consensus 175 --~l~h~----~-------------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~--~~ 233 (258)
.+.-- . +-+..++-..+.|||||.+++..+.. ...++.+++++.+ ..
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e------------rl~ei~~~l~~~~~~~k 190 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE------------RLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH------------HHHHHHHHHHhcCCCce
Confidence 22111 1 23456778889999999999976532 3577888888654 44
Q ss_pred EeeeecCCCCe----EEEEEEeCCc
Q 025071 234 AVRKVDGFGLD----TEVVFRKKKK 254 (258)
Q Consensus 234 ~v~~v~g~~l~----~~~~f~K~~~ 254 (258)
++.-|-..... -.+.++|.++
T Consensus 191 ~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 191 RIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred EEEEecCCCCCcceEEEEEEecCCC
Confidence 55555322222 2566666554
No 113
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.89 E-value=3.1e-08 Score=86.85 Aligned_cols=138 Identities=21% Similarity=0.221 Sum_probs=82.8
Q ss_pred CCCCC-EEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC------------------CCceeeecCCCCCC------CCC
Q 025071 113 LFNES-KALSIGARVGQEVAALKLV-GVSDSIGIDLVPR------------------PPLVIKGDFHAQPF------DNG 166 (258)
Q Consensus 113 l~~~~-~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~------------------~~~~~~aDa~~LPf------~d~ 166 (258)
+.+.+ +||+||||||+.+.++++. ..-.-.-.|.... ++..+......+|. ..+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 34444 5999999999999988763 2111222232110 11122122222333 357
Q ss_pred CeeEEEeccccccC---ChHHHHHHHHhcccCCcEEEEEeccccCcCcC----------------CCCCCCChhHHHHHh
Q 025071 167 TFDFEFSNVFDHAL---YPWKFVGEIERTLKPAGVCVLHVALSRRADKY----------------SANDLFSVKPLVKLF 227 (258)
Q Consensus 167 SFD~V~s~~l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y----------------~~~~~~s~~~l~~lf 227 (258)
+||+|+|..+-|+. .-+..++++.++|+|||.+++.-|..+.+ .+ +..-+.+.+++.++.
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G-~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDG-KFTSESNAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCC-EeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 99999995344443 33456799999999999999975543321 11 112235778899999
Q ss_pred hcCceEEeeeecCCCCeEEEEEEe
Q 025071 228 RESELVAVRKVDGFGLDTEVVFRK 251 (258)
Q Consensus 228 ~~~~~~~v~~v~g~~l~~~~~f~K 251 (258)
.+.|+.-...++=.-=...+||||
T Consensus 181 ~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCcccccCCCCeEEEEeC
Confidence 999887666553111125789987
No 114
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.88 E-value=4.8e-08 Score=90.52 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=72.8
Q ss_pred CEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--c--
Q 025071 117 SKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--V-- 175 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~-- 175 (258)
.+|||+|||+|..+..++.. +..+|+|+|+++. ...++++|+.+ ++++++||+|+++ .
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 68999999999999988864 3358999998742 12467778643 3346789999986 1
Q ss_pred ---cccc-----CCh--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 176 ---FDHA-----LYP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 176 ---l~h~-----~~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
+.+. .+| ..+++++.++|||||++++.+.. +.+++.++|.+.++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~-------------~~~~~~~~~~~~~~~ 280 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN-------------SRVHLEEAYPDVPFT 280 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc-------------CHHHHHHHHhhCCCE
Confidence 1110 112 35678999999999999986531 124577888877654
Q ss_pred E
Q 025071 234 A 234 (258)
Q Consensus 234 ~ 234 (258)
.
T Consensus 281 ~ 281 (307)
T PRK11805 281 W 281 (307)
T ss_pred E
Confidence 4
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=9.1e-09 Score=96.06 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=64.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++.+|||||||+|..+..+++. +. ..|+|+|+++. ...++.+|+...+.+.++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 4567889999999999999888764 21 35999998752 1235678887777677889999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+++. ...+.++|||||++++.+
T Consensus 157 ~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHh------HHHHHHhcCCCCEEEEEe
Confidence 44332 245788999999988854
No 116
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.88 E-value=6.9e-09 Score=93.82 Aligned_cols=88 Identities=24% Similarity=0.306 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC------ceeeecCCCCCCCCCCeeEEEe-ccccccCChHHHHH
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP------LVIKGDFHAQPFDNGTFDFEFS-NVFDHALYPWKFVG 187 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~------~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~p~~~l~ 187 (258)
...++||||+|.|..+..++.. +.+|++.+.|+.+. .+.+-+..++.-.+..||+|.| |+++...+|...++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLR 172 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHH
Confidence 3467999999999999999765 56899999885321 1233344445545678999999 79999999999999
Q ss_pred HHHhcccCCcEEEEEe
Q 025071 188 EIERTLKPAGVCVLHV 203 (258)
Q Consensus 188 Ei~RVLKPGG~lii~v 203 (258)
+|++.|+|+|++++.+
T Consensus 173 ~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 173 DIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999988863
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.87 E-value=1.9e-08 Score=96.97 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC--------------CCceeeecCCCCC--CCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPR--------------PPLVIKGDFHAQP--FDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~--------------~~~~~~aDa~~LP--f~d~SFD~V~s~- 174 (258)
..++.+|||+|||+|..+..+++.+. ..|+|+|+++. ...++++|+..++ +++++||.|+++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45788999999999999988877532 48999998752 1246788888765 457899999963
Q ss_pred ------cccc------cCCh----------HHHHHHHHhcccCCcEEEEEe
Q 025071 175 ------VFDH------ALYP----------WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ------~l~h------~~~p----------~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+ ...+ .+++.++.++|||||++++.+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1211 1122 257899999999999998864
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.85 E-value=9.2e-09 Score=94.13 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=66.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------------CCceeeecCCC-CCCCCCCeeEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------------PPLVIKGDFHA-QPFDNGTFDFE 171 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------------~~~~~~aDa~~-LPf~d~SFD~V 171 (258)
.++.+||+||||+|..+..+.+. +..+|+++|+++. ...++.+|+.. ++..+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999988775 5668999998641 11356677654 23356899999
Q ss_pred EeccccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++...++.. ....+++++.|.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 996433321 12567899999999999998864
No 119
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.84 E-value=1.7e-08 Score=93.72 Aligned_cols=95 Identities=21% Similarity=0.353 Sum_probs=72.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------------CCceeeecC------CCCCCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------------PPLVIKGDF------HAQPFD 164 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------------~~~~~~aDa------~~LPf~ 164 (258)
..+++..++|+|||-|..+..-.+.|....+|+|++.. ...++.||. ..++++
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 35677889999999999877666778888999998642 124567764 367788
Q ss_pred CCCeeEEEec-cccc----cCChHHHHHHHHhcccCCcEEEEEeccc
Q 025071 165 NGTFDFEFSN-VFDH----ALYPWKFVGEIERTLKPAGVCVLHVALS 206 (258)
Q Consensus 165 d~SFD~V~s~-~l~h----~~~p~~~l~Ei~RVLKPGG~lii~v~~~ 206 (258)
|-+||+|-|- ++|. ......+++.+++.|||||+++-++|..
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 8889999884 4443 3345568899999999999999998853
No 120
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.83 E-value=3.9e-08 Score=96.92 Aligned_cols=105 Identities=19% Similarity=0.334 Sum_probs=70.7
Q ss_pred CCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec--cc
Q 025071 116 ESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN--VF 176 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~--~l 176 (258)
+.+|||+|||+|..+..++. .+..+|+|+|+++. ...++.+|+.+ ++++++||+|+|| .+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 46899999999999988765 34458999999742 12345666543 3456789999996 11
Q ss_pred cc-----c------CCh--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 177 DH-----A------LYP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 177 ~h-----~------~~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
.+ + .+| ..+++++.++|+|||.+++.+... ..+.+.+++.+.|
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------q~~~v~~~~~~~g 285 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------QEEAVTQIFLDHG 285 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------hHHHHHHHHHhcC
Confidence 11 0 012 235678899999999998865321 2456777777766
Q ss_pred eE
Q 025071 232 LV 233 (258)
Q Consensus 232 ~~ 233 (258)
+.
T Consensus 286 ~~ 287 (506)
T PRK01544 286 YN 287 (506)
T ss_pred CC
Confidence 54
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.82 E-value=3.1e-08 Score=95.40 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=66.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC--------------Cce--eeecCCCCCC--CCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP--------------PLV--IKGDFHAQPF--DNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~--------------~~~--~~aDa~~LPf--~d~SFD~V~s 173 (258)
..++.+|||+|||+|..+..+++. +...|+|+|+++.. ..+ ..+|+...++ ++++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 457889999999999998888763 33479999987531 112 4466665555 6789999986
Q ss_pred c-------cccccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 174 N-------VFDHALY----------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~-------~l~h~~~----------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+ .+.+.++ ..+.+.++.|+|||||.++..+
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 3443332 2468899999999999998864
No 122
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.82 E-value=2.5e-09 Score=95.27 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=83.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC----------ceeeecCC-CCC-CCCCCeeEEEec-cccccCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP----------LVIKGDFH-AQP-FDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~----------~~~~aDa~-~LP-f~d~SFD~V~s~-~l~h~~~ 181 (258)
+-.++||+|||||-....|+..- .+.+|+|+|..+. ...++++. -++ ..++.||+|.+. ++..+-+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~ 203 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA 203 (287)
T ss_pred ccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc
Confidence 45789999999999999998763 5799999986432 12344443 223 457899999995 7777667
Q ss_pred hHHHHHHHHhcccCCcEEEEEeccccCcCcC----CCCCCCChhHHHHHhhcCceE
Q 025071 182 PWKFVGEIERTLKPAGVCVLHVALSRRADKY----SANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y----~~~~~~s~~~l~~lf~~~~~~ 233 (258)
-+.++.-+.+.|+|||.+.+.+-+......| +..--.+...+..++...|+.
T Consensus 204 Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~ 259 (287)
T COG4976 204 LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLE 259 (287)
T ss_pred hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCce
Confidence 7778888999999999999986543222222 111114677789999988754
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=2.6e-08 Score=96.18 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=68.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC---------------CCceeeecCCCCC----CCCCCeeEE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR---------------PPLVIKGDFHAQP----FDNGTFDFE 171 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~---------------~~~~~~aDa~~LP----f~d~SFD~V 171 (258)
..++.+|||+|||+|..+..+++. + ...|+|+|+++. ...++.+|+..++ +.+++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 456889999999999999888764 2 247999998642 1246678888876 567899999
Q ss_pred Eec-------cccccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSN-------VFDHALY----------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~-------~l~h~~~----------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+++ ++.+.++ ..+.+.++.++|||||+++..+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 973 3443332 2467899999999999988754
No 124
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.80 E-value=1.6e-07 Score=84.51 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC------------CceeeecCCC-CCC-CCCCeeEEEec--ccc-
Q 025071 116 ESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP------------PLVIKGDFHA-QPF-DNGTFDFEFSN--VFD- 177 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~------------~~~~~aDa~~-LPf-~d~SFD~V~s~--~l~- 177 (258)
+.+|||+|||+|..+..+++. +..+|+|+|+++.. ..+.++|..+ ++- ..++||+|++| .+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 458999999999999888753 33479999987521 2467778654 221 13579999997 221
Q ss_pred ----ccC------C--------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 178 ----HAL------Y--------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 178 ----h~~------~--------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
... + ...+++.+.++|||||++++..... ...++.+++++.|+.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~------------~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER------------QAPLAVEAFARAGLI 234 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc------------hHHHHHHHHHHCCCC
Confidence 100 1 1256677789999999999876421 246788888887764
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=98.80 E-value=4.2e-08 Score=88.01 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhc----CCCcEEEEeCCCC----------CCceeeecCCCCCCCCCCeeEEEec--cc--
Q 025071 115 NESKALSIGARVGQEVAALKLV----GVSDSIGIDLVPR----------PPLVIKGDFHAQPFDNGTFDFEFSN--VF-- 176 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~----g~~~v~GvD~s~~----------~~~~~~aDa~~LPf~d~SFD~V~s~--~l-- 176 (258)
.+.+|||+|||+|.++..+++. +..+|+|+|+++. ...+..+|+...++ +++||+|++| .+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 3679999999999999887653 2347999998642 23478889887765 5799999998 11
Q ss_pred --ccc-------CChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCC------ChhHHHHHhhcCceE
Q 025071 177 --DHA-------LYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLF------SVKPLVKLFRESELV 233 (258)
Q Consensus 177 --~h~-------~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~------s~~~l~~lf~~~~~~ 233 (258)
.+. .....+++.+.|.++||+. ++ |..--+..|+..+.| +-....++.++.|++
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL--P~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II--PQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee--CcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence 111 1245578888997777664 33 433233455544433 335566777777765
No 126
>PRK04457 spermidine synthase; Provisional
Probab=98.78 E-value=1.9e-08 Score=91.11 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC----------------CCceeeecCCC-CCCCCCCeeEEEecc
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR----------------PPLVIKGDFHA-QPFDNGTFDFEFSNV 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf~d~SFD~V~s~~ 175 (258)
.++.+|||||||+|..+.++++. +..+++++|+++. ...++.+|+.+ ++-..++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45678999999999999888753 4457999998531 12356777643 222346899999864
Q ss_pred ccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++... ....+++++.++|+|||++++.+
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 43221 23678999999999999999854
No 127
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=5e-08 Score=87.88 Aligned_cols=114 Identities=24% Similarity=0.315 Sum_probs=83.6
Q ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHh-cC-CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeE
Q 025071 109 QRHFLFNESKALSIGARVGQEVAALKL-VG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~ 170 (258)
....+.++++|||.|+|+|.++.+|+. .| ..+|+..|+.+. ......+|..+--+++ .||+
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDa 166 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDA 166 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCE
Confidence 345688999999999999999999985 33 368999997431 1234557777666666 8999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
|+.. +++|+.++..+.++|||||.+++.+|+-.+ .+...+-+++.|++++..+
T Consensus 167 v~LD----mp~PW~~le~~~~~Lkpgg~~~~y~P~veQ-----------v~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 167 VFLD----LPDPWNVLEHVSDALKPGGVVVVYSPTVEQ-----------VEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEEc----CCChHHHHHHHHHHhCCCcEEEEEcCCHHH-----------HHHHHHHHHhcCccchhhh
Confidence 9985 468999999999999999999998774321 2334444555566655544
No 128
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.76 E-value=4e-08 Score=92.10 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------------------CCceeeecCCC------CCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------------------PPLVIKGDFHA------QPF 163 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------------------~~~~~~aDa~~------LPf 163 (258)
++.+|||+|||-|..+.--...+...++|+|++.. ...++.+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999888776666667788999998631 11245566542 233
Q ss_pred CCCCeeEEEec-cccccCChH----HHHHHHHhcccCCcEEEEEecc
Q 025071 164 DNGTFDFEFSN-VFDHALYPW----KFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 164 ~d~SFD~V~s~-~l~h~~~p~----~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
....||+|-|- ++|++...+ .+++.+.+.|||||+++.+++.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 34599999994 787766443 4789999999999999999764
No 129
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=4.6e-08 Score=87.56 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=76.1
Q ss_pred CEEEEECCCCCHHHHHHHh-cCC--CcEEEEeCCCCCC-----------c-----ee--eecCCCCCCCCCCeeEEEec-
Q 025071 117 SKALSIGARVGQEVAALKL-VGV--SDSIGIDLVPRPP-----------L-----VI--KGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~-~g~--~~v~GvD~s~~~~-----------~-----~~--~aDa~~LPf~d~SFD~V~s~- 174 (258)
.+||+||||.|+..--+-+ ... -.|.+.|.|+... . +. ..+.-.-|.+.+|+|+|++-
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 3899999999998765543 221 3689999875321 1 11 11222446778999999884
Q ss_pred cccccC--ChHHHHHHHHhcccCCcEEEEEecc-c-----cC------cC-cCCC---C--CCCChhHHHHHhhcCceEE
Q 025071 175 VFDHAL--YPWKFVGEIERTLKPAGVCVLHVAL-S-----RR------AD-KYSA---N--DLFSVKPLVKLFRESELVA 234 (258)
Q Consensus 175 ~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~-~-----~~------~~-~y~~---~--~~~s~~~l~~lf~~~~~~~ 234 (258)
++..+. .-+.++.+++|+|||||.+++---. . |- ++ .|.. . -+++.+++.++|.++|+..
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~ 232 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEE 232 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccch
Confidence 443332 2246889999999999999885211 0 00 00 1211 1 1358899999999998765
Q ss_pred ee
Q 025071 235 VR 236 (258)
Q Consensus 235 v~ 236 (258)
++
T Consensus 233 ~~ 234 (264)
T KOG2361|consen 233 VQ 234 (264)
T ss_pred hc
Confidence 44
No 130
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=8.8e-08 Score=87.76 Aligned_cols=121 Identities=30% Similarity=0.531 Sum_probs=81.9
Q ss_pred EEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCCCC---------------ceeeecCCCCCCCCCCeeEEEec--ccccc
Q 025071 118 KALSIGARVGQEVAALKLVGV-SDSIGIDLVPRPP---------------LVIKGDFHAQPFDNGTFDFEFSN--VFDHA 179 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~~~---------------~~~~aDa~~LPf~d~SFD~V~s~--~l~h~ 179 (258)
+|||+|||+|..+.+++.... .+|+|+|+|+... .++++|..+ +.. +.||+|+|| .+..-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCCCCCCCc
Confidence 799999999999999987653 4899999986311 123333211 222 389999998 33221
Q ss_pred ----------CCh--------------HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc-eEE
Q 025071 180 ----------LYP--------------WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE-LVA 234 (258)
Q Consensus 180 ----------~~p--------------~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~-~~~ 234 (258)
.+| .+++.++.+.|+|||.+++..... ..+.+.++|.+.+ +..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~------------q~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT------------QGEAVKALFEDTGFFEI 258 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC------------cHHHHHHHHHhcCCceE
Confidence 133 245788999999999999976421 3578999999998 554
Q ss_pred eeee-cCCCCeEEEEEEeC
Q 025071 235 VRKV-DGFGLDTEVVFRKK 252 (258)
Q Consensus 235 v~~v-~g~~l~~~~~f~K~ 252 (258)
+... +.++..+.+..++.
T Consensus 259 v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 259 VETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred EEEEecCCCceEEEEEEec
Confidence 4443 46666666665553
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.75 E-value=3e-08 Score=87.32 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=62.5
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC---------------CCceeeecCCCCCCCCCCe
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SF 168 (258)
.+++...+.++.+|||||||+|..+..|+.. |. ..|+++|..+. ...++.+|...---+...|
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SE
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCc
Confidence 3344445889999999999999999888874 42 35999997531 2346788876433345789
Q ss_pred eEEEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|.|+++ +....+ .++.+-||+||++++-+.
T Consensus 143 D~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 999995 554433 467888999999999654
No 132
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.74 E-value=2.3e-07 Score=84.66 Aligned_cols=145 Identities=19% Similarity=0.277 Sum_probs=100.0
Q ss_pred hhhCchhHHHHHHHHHHHHHHHHHhcC----CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------
Q 025071 86 AVWTTRDWERKVRVFSRFFQDLKQRHF----LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------ 149 (258)
Q Consensus 86 ~~W~~~~w~~~~~~~~~~~~~L~~~~~----l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------ 149 (258)
+=|...+-.++-..+..+++.|.+... -....+||--|||.|+++-.++..|+ .|.|.|.|-.
T Consensus 23 RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~ 101 (270)
T PF07942_consen 23 RDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHC 101 (270)
T ss_pred hhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHccc
Confidence 346554445555566666666654321 12356899999999999999999998 7999995310
Q ss_pred ------------------------------C-------------CceeeecCCCCCCCC---CCeeEEEec-cccccCCh
Q 025071 150 ------------------------------P-------------PLVIKGDFHAQPFDN---GTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 150 ------------------------------~-------------~~~~~aDa~~LPf~d---~SFD~V~s~-~l~h~~~p 182 (258)
| .....||+.++.-++ ++||+|+.+ -++-..+-
T Consensus 102 ~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni 181 (270)
T PF07942_consen 102 SQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENI 181 (270)
T ss_pred CCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHH
Confidence 0 013456777766555 799999886 56777778
Q ss_pred HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCC--------C-CChhHHHHHhhcCceEEee
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALSRRADKYSAND--------L-FSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~--------~-~s~~~l~~lf~~~~~~~v~ 236 (258)
-.+++.|+++|||||..+=.-|. .|+..+ + .+.+||..+..+.|+..+.
T Consensus 182 ~~Yi~tI~~lLkpgG~WIN~GPL-----lyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 182 IEYIETIEHLLKPGGYWINFGPL-----LYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred HHHHHHHHHHhccCCEEEecCCc-----cccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 88999999999999944332222 222222 2 5889999999999876444
No 133
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=7.1e-08 Score=93.46 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
..++.+|||+|||+|..+..+++. +...|+|+|+++.. ..++++|+..++ ++++||.|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 356789999999999988777652 22479999987521 236778888776 66799999963
Q ss_pred ------ccccc------CC----------hHHHHHHHHhcccCCcEEEEEe
Q 025071 175 ------VFDHA------LY----------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ------~l~h~------~~----------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+. .. ..+.+.++.++|||||+++..+
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 22211 11 2357899999999999998864
No 134
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=5.9e-08 Score=93.86 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=67.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCC-CCCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQP-FDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LP-f~d~SFD~V~s 173 (258)
...++.+|||+|||+|..+..+++. +...|+++|+++.. ..+.++|+..++ +.+++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3567889999999999998887764 23479999987421 236678888877 66789999997
Q ss_pred c----c---ccccC----------------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 174 N----V---FDHAL----------------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~----~---l~h~~----------------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+ . +.+-+ ...+.+.++.+.|||||.++..+
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4 1 22111 12456889999999999987753
No 135
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.68 E-value=4.8e-07 Score=78.28 Aligned_cols=105 Identities=20% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC---------------CCceeeecCCCC-CCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR---------------PPLVIKGDFHAQ-PFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~---------------~~~~~~aDa~~L-Pf~d~SFD~V~s~ 174 (258)
.+.++++++|||||||..+...+..+ ..+|+++|.++. ...++.+++.+. + .-.+||.||.+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIG 109 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIG 109 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEEC
Confidence 56789999999999999998887544 358999997532 123667776533 3 22279999985
Q ss_pred -cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
. . .-+..++.+...|||||++++...+ +-+.....+++++.|.
T Consensus 110 Gg-~---~i~~ile~~~~~l~~ggrlV~nait-----------lE~~~~a~~~~~~~g~ 153 (187)
T COG2242 110 GG-G---NIEEILEAAWERLKPGGRLVANAIT-----------LETLAKALEALEQLGG 153 (187)
T ss_pred CC-C---CHHHHHHHHHHHcCcCCeEEEEeec-----------HHHHHHHHHHHHHcCC
Confidence 3 2 3467788999999999999997542 1134556777777766
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.67 E-value=7.5e-08 Score=87.16 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=65.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEec-
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSN- 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~- 174 (258)
..++.+|||+|||+|..+..+++. + ...|+++|+++.. ..+..+|+..++...++||.|+++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 457889999999999999887763 2 2379999987421 235677887777667789999974
Q ss_pred ------cccccCC----------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 175 ------VFDHALY----------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ------~l~h~~~----------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+-++ ..+.++++.+.|||||+++..+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2222111 1247899999999999988753
No 137
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=3.6e-08 Score=90.02 Aligned_cols=88 Identities=26% Similarity=0.326 Sum_probs=67.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--------CCC-ceeeecCCCCCCCCCCeeEEEec-cccccCC-
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP--------RPP-LVIKGDFHAQPFDNGTFDFEFSN-VFDHALY- 181 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--------~~~-~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~- 181 (258)
...+..++|+|||.|.... ......++|.|++. ... .++.+|+.++|+.+++||.+++. +++|+..
T Consensus 43 ~~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cCCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 3458899999999997542 11222478888752 123 58899999999999999999994 7788763
Q ss_pred --hHHHHHHHHhcccCCcEEEEEe
Q 025071 182 --PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 182 --p~~~l~Ei~RVLKPGG~lii~v 203 (258)
...+++|+.|+|||||...+.+
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 4568999999999999866654
No 138
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=1.3e-07 Score=91.46 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=64.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s 173 (258)
..++.+|||+|||+|..+..+++. +...|+|+|+++. ...++++|+.+++ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 456789999999999999888763 2357999998642 1246778887763 44 78999998
Q ss_pred cc-------ccccC------C----------hHHHHHHHHhcccCCcEEEEE
Q 025071 174 NV-------FDHAL------Y----------PWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~-------l~h~~------~----------p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+. +.+.+ . ...+++++.|+|||||.++..
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 41 22211 1 134689999999999999865
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.5e-07 Score=81.45 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=67.2
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--------------C-CCceeeecCCCCCCCCCCeeEE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP--------------R-PPLVIKGDFHAQPFDNGTFDFE 171 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--------------~-~~~~~~aDa~~LPf~d~SFD~V 171 (258)
+++...+.++.+||+||||+|..+..|++... +|+.+|..+ + ...+.++|...===+..-||.|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEE
Confidence 33444578899999999999999999998753 899999642 1 2356778865322234789999
Q ss_pred Eec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+.. +...++ +-+.+-|||||++++-+.
T Consensus 143 ~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 984 666655 356788999999999664
No 140
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.63 E-value=3.2e-08 Score=88.33 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=73.6
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------CC---ceeeecCCCCCCCCCCeeEEEec-cccccCC
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------PP---LVIKGDFHAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~~---~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
...++|||||-|.....|...|+..++-+|.|.. +. ...++|-+.|||.++|||+|++. ++||..+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 4579999999999999998888888999997531 11 25678999999999999999996 7888777
Q ss_pred hHHHHHHHHhcccCCcEEEEEe
Q 025071 182 PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~v 203 (258)
-...+..+...|||+|.++...
T Consensus 153 LPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 153 LPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred CchHHHHHHHhcCCCccchhHH
Confidence 7777889999999999987753
No 141
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=6.2e-07 Score=82.77 Aligned_cols=107 Identities=23% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------CC-ceeeecCCCCCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------PP-LVIKGDFHAQPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~~-~~~~aDa~~LPf~d~SFD~V~s~-~l~ 177 (258)
.+.+|||+|||.|-++..|++. +...++-+|.+.. .. .+...|. -.+-++ +||+|+|| =||
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-~~~v~~-kfd~IisNPPfh 235 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL-YEPVEG-KFDLIISNPPFH 235 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-cccccc-cccEEEeCCCcc
Confidence 4569999999999999999875 3567899997531 11 2344443 345556 99999998 222
Q ss_pred ccC--C---hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 178 HAL--Y---PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 178 h~~--~---p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
.-. . -++.+++..+.|++||.+.+.... ...| ..-+.++|.+++.+
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~---~l~y-------~~~L~~~Fg~v~~l 286 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANR---HLPY-------EKKLKELFGNVEVL 286 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC---CCCh-------HHHHHHhcCCEEEE
Confidence 211 1 246789999999999999887531 1111 34567777766544
No 142
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.59 E-value=1e-06 Score=85.31 Aligned_cols=135 Identities=13% Similarity=0.165 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC----CC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA----QP 162 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~----LP 162 (258)
.+++.+++.....++.+|||+|||+|..+..|++.+ ..|+|+|+++. ...++++|+.+ ++
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344444443334567899999999999999998876 58999998752 12467788753 45
Q ss_pred CCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhh-cCceEEeeeecCC
Q 025071 163 FDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFR-ESELVAVRKVDGF 241 (258)
Q Consensus 163 f~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~-~~~~~~v~~v~g~ 241 (258)
+.+++||+|+++-=.. .....++.+.+ ++|++.+++..... .+ .+++..+.+ ...+.++..+|=|
T Consensus 363 ~~~~~fD~Vi~dPPr~--g~~~~~~~l~~-~~~~~ivyvSCnp~---------tl--aRDl~~L~~~gY~l~~i~~~DmF 428 (443)
T PRK13168 363 WALGGFDKVLLDPPRA--GAAEVMQALAK-LGPKRIVYVSCNPA---------TL--ARDAGVLVEAGYRLKRAGMLDMF 428 (443)
T ss_pred hhcCCCCEEEECcCCc--ChHHHHHHHHh-cCCCeEEEEEeChH---------Hh--hccHHHHhhCCcEEEEEEEeccC
Confidence 7778999999851000 01244555655 69999888865321 11 233444433 2346677777643
Q ss_pred CC----eEEEEEEe
Q 025071 242 GL----DTEVVFRK 251 (258)
Q Consensus 242 ~l----~~~~~f~K 251 (258)
.- .+.+.++|
T Consensus 429 P~T~HvE~v~lL~r 442 (443)
T PRK13168 429 PHTGHVESMALFER 442 (443)
T ss_pred CCCCcEEEEEEEEe
Confidence 32 24555543
No 143
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.59 E-value=5.5e-07 Score=81.32 Aligned_cols=114 Identities=24% Similarity=0.329 Sum_probs=76.4
Q ss_pred hcCCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCCCCC---CCCe
Q 025071 110 RHFLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFD---NGTF 168 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~---d~SF 168 (258)
...+.+|++||+.|+|+|.++.+|++. | ..+|+..|..+. ...+...|..+--|+ ++.|
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 346789999999999999999999863 3 358999997431 123566777654553 3689
Q ss_pred eEEEeccccccCChHHHHHHHHhcc-cCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTL-KPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVL-KPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
|+|+.. +++|+.++..+.++| ||||++++.+|+-.+ +....+.+++.|+.++..+
T Consensus 115 DavfLD----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------v~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 115 DAVFLD----LPDPWEAIPHAKRALKKPGGRICCFSPCIEQ-----------VQKTVEALREHGFTDIETV 170 (247)
T ss_dssp EEEEEE----SSSGGGGHHHHHHHE-EEEEEEEEEESSHHH-----------HHHHHHHHHHTTEEEEEEE
T ss_pred cEEEEe----CCCHHHHHHHHHHHHhcCCceEEEECCCHHH-----------HHHHHHHHHHCCCeeeEEE
Confidence 999985 468999999999999 999999998774211 2334445566787766554
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.56 E-value=2.1e-07 Score=80.96 Aligned_cols=88 Identities=24% Similarity=0.306 Sum_probs=62.6
Q ss_pred CEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCC-CC--CCCCCeeEEEecc--
Q 025071 117 SKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHA-QP--FDNGTFDFEFSNV-- 175 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~-LP--f~d~SFD~V~s~~-- 175 (258)
..+||||||.|..+..++.. +...++|+|+... ...++++|+.. ++ ++++|+|.|+.+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999988864 4568999998531 22467788876 33 5689999998851
Q ss_pred ----ccccC---ChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 ----FDHAL---YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 ----l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-.|.. --..++.+++|+|||||.+.+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 11211 224688999999999999988763
No 145
>PRK01581 speE spermidine synthase; Validated
Probab=98.55 E-value=2e-07 Score=88.42 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=64.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC----------------------CCceeeecCCC-CCCCCCCe
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR----------------------PPLVIKGDFHA-QPFDNGTF 168 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~----------------------~~~~~~aDa~~-LPf~d~SF 168 (258)
..++.+||+||||+|..+..+.+.+ ..+|++||+++. ...++.+|+.+ ++-.+++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3466799999999999888777653 468999998641 01245566654 34456789
Q ss_pred eEEEeccccccC------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 169 DFEFSNVFDHAL------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 169 D~V~s~~l~h~~------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
|+|++...+... .-..+++++.+.|+|||++++..
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999996322211 12457899999999999988863
No 146
>PRK03612 spermidine synthase; Provisional
Probab=98.55 E-value=3.6e-07 Score=90.37 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC----------------------CCceeeecCCC-CCCCCCCee
Q 025071 114 FNESKALSIGARVGQEVAALKLVGV-SDSIGIDLVPR----------------------PPLVIKGDFHA-QPFDNGTFD 169 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~----------------------~~~~~~aDa~~-LPf~d~SFD 169 (258)
+++.+|||||||+|..+.++.+.+. .+|+++|+++. ...++.+|+.+ +.-.+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4678999999999999988877653 68999998531 11356677664 233457999
Q ss_pred EEEecccccc-C-----ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 170 FEFSNVFDHA-L-----YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 170 ~V~s~~l~h~-~-----~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
+|+++.-+.. . ...++++++.+.|||||.+++....+ .+. .....++.+.+++.|+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~----~~~---~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP----YFA---PKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc----ccc---hHHHHHHHHHHHHcCC
Confidence 9999632221 1 12457899999999999998874321 011 1123556677777766
No 147
>PLN02366 spermidine synthase
Probab=98.50 E-value=5.2e-07 Score=83.85 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------CCceeeecCCCC--CCCCCCeeE
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------PPLVIKGDFHAQ--PFDNGTFDF 170 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------~~~~~~aDa~~L--Pf~d~SFD~ 170 (258)
..++.+||+||||+|..+.++.+.. ..+|+.+|+++. ...++.+|+... ..++++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3567899999999999999988763 457888887531 123566775321 123678999
Q ss_pred EEeccccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 171 EFSNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 171 V~s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
|++...++.. .-..+++++.+.|+|||+++...
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9996433221 12457899999999999998753
No 148
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.50 E-value=6.2e-07 Score=81.37 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=61.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC-------------------CceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP-------------------PLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~-------------------~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+||+||||+|..+..+.+.+ ..+++++|+++.. ..++.+|+.+ +.-.+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999988876654 5679999986421 1233444422 122257999999
Q ss_pred eccccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 173 SNVFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+....... ....+++.+.+.|+|||++++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 85332211 13567899999999999998863
No 149
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=8.1e-07 Score=83.44 Aligned_cols=97 Identities=18% Similarity=0.103 Sum_probs=73.3
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC------------CC---Cceeee-cCCCCCCCCCCeeE
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP------------RP---PLVIKG-DFHAQPFDNGTFDF 170 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~------------~~---~~~~~a-Da~~LPf~d~SFD~ 170 (258)
+++...+.+|..|||-=||||.++....-.|. +++|.|+.. +. ..+..+ |+..+||++++||+
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccce
Confidence 34444567899999999999999988777785 899999752 11 113444 99999999999999
Q ss_pred EEec-----cc-cccCC----hHHHHHHHHhcccCCcEEEEEec
Q 025071 171 EFSN-----VF-DHALY----PWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 171 V~s~-----~l-~h~~~----p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|.+. .- -.... -.++++++.+|||+||++++..+
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9994 11 11111 24678999999999999999765
No 150
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.46 E-value=7.6e-07 Score=82.04 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=61.2
Q ss_pred CCEEEEECCCCCHHHHH----HHhc-C----CCcEEEEeCCCC----------C--------------------------
Q 025071 116 ESKALSIGARVGQEVAA----LKLV-G----VSDSIGIDLVPR----------P-------------------------- 150 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~----L~~~-g----~~~v~GvD~s~~----------~-------------------------- 150 (258)
.-+|+..||.||..... |.+. + ..+|+|+|+++. +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 36999999999996533 3332 1 136999998631 0
Q ss_pred ----------CceeeecCCCCCCC-CCCeeEEEe-ccccccCC--hHHHHHHHHhcccCCcEEEEE
Q 025071 151 ----------PLVIKGDFHAQPFD-NGTFDFEFS-NVFDHALY--PWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 151 ----------~~~~~aDa~~LPf~-d~SFD~V~s-~~l~h~~~--p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+.+.|..+.|++ .+.||+|+| |++.|... ..++++++++.|+|||++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01344555554554 678999999 57777643 567899999999999998875
No 151
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.45 E-value=1.7e-06 Score=64.85 Aligned_cols=85 Identities=33% Similarity=0.470 Sum_probs=60.5
Q ss_pred EEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC-----------C----CceeeecCCC--CCCCC-CCeeEEEeccccc
Q 025071 119 ALSIGARVGQEVAALKLVGV--SDSIGIDLVPR-----------P----PLVIKGDFHA--QPFDN-GTFDFEFSNVFDH 178 (258)
Q Consensus 119 VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~-----------~----~~~~~aDa~~--LPf~d-~SFD~V~s~~l~h 178 (258)
++|+|||+|... .+..... ..++|+|.++. . ..+..+|... +|+.+ ..||++.+....|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999965 3333221 36889997631 1 1356666665 89998 5999994444333
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEec
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
...+...+.++.|+|+|||.+++...
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 33378899999999999999988754
No 152
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.43 E-value=3.6e-06 Score=74.44 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=66.7
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCC--------CCCCceeeecCCCCCCCCCCeeEEEec-cc
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLV--------PRPPLVIKGDFHAQPFDNGTFDFEFSN-VF 176 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s--------~~~~~~~~aDa~~LPf~d~SFD~V~s~-~l 176 (258)
+.+........+|+|||+|+|..+..+.+ .+..+++..|+- .....++.+|+. -|++. +|+++.. ++
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhh
Confidence 33444566677999999999999988875 444578889962 123457788887 56666 9999985 66
Q ss_pred cccCChH--HHHHHHHhcccCC--cEEEEEe
Q 025071 177 DHALYPW--KFVGEIERTLKPA--GVCVLHV 203 (258)
Q Consensus 177 ~h~~~p~--~~l~Ei~RVLKPG--G~lii~v 203 (258)
|++.+.+ +.++.+++.|+|| |+++|.-
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 6665443 4689999999999 9998874
No 153
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.42 E-value=3.7e-07 Score=81.43 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCC-C-----CCCCCee
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQ-P-----FDNGTFD 169 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~L-P-----f~d~SFD 169 (258)
.++.+|||+|||+|..+.+++.. + ..+|+++|+++. ...++.+|+.+. + .++++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 35789999999999988777653 2 358999998642 123567776542 2 1256899
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+..+-. .....++.++.+.|||||.+++-
T Consensus 147 ~VfiDa~k--~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDADK--PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECCCH--HHHHHHHHHHHHhcCCCeEEEEE
Confidence 99985321 12346788999999999988763
No 154
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.42 E-value=3.5e-06 Score=78.10 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCC-CCCCeeEEEeccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPF-DNGTFDFEFSNVFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf-~d~SFD~V~s~~l~h 178 (258)
++.+|||+|||+|..+..+++.+ .+|+|+|+++. ...++++|+.++.. .++.||+|+++--..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 46899999999999999999877 58999998642 13477888876643 346799999861110
Q ss_pred cCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCC
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGL 243 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l 243 (258)
.. ...+ .++..-++|++.+++..... . -.+++..+ ....+..+..+|=|.-
T Consensus 252 G~-~~~~-~~~l~~~~~~~ivyvsc~p~---------t--~~rd~~~l-~~y~~~~~~~~DmFP~ 302 (315)
T PRK03522 252 GI-GKEL-CDYLSQMAPRFILYSSCNAQ---------T--MAKDLAHL-PGYRIERVQLFDMFPH 302 (315)
T ss_pred Cc-cHHH-HHHHHHcCCCeEEEEECCcc---------c--chhHHhhc-cCcEEEEEEEeccCCC
Confidence 01 1222 23344467877777653211 1 12344444 4556777777764443
No 155
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.41 E-value=4.5e-07 Score=88.09 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=72.1
Q ss_pred CCCCC-EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------C--CceeeecCCCCCCCCCCeeEEEe-ccc
Q 025071 113 LFNES-KALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------P--PLVIKGDFHAQPFDNGTFDFEFS-NVF 176 (258)
Q Consensus 113 l~~~~-~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~--~~~~~aDa~~LPf~d~SFD~V~s-~~l 176 (258)
+.+.. ++|-+|||.-.+...+.+.|+..++.+|.|+. . ..+...|...+.|+|+|||+|+. +.+
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcc
Confidence 34445 89999999999999999999999999998742 1 13678999999999999999998 566
Q ss_pred cccCCh----------HHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYP----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
++...+ ...+.|+.|||+|||+.+..
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 665422 23468999999999986554
No 156
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.40 E-value=4.3e-07 Score=92.76 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=64.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCC-CCCCCCeeEEEec--
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQ-PFDNGTFDFEFSN-- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~L-Pf~d~SFD~V~s~-- 174 (258)
++.+|||+|||+|..+.+++..|..+|+++|+++. ...++++|+.+. .-..++||+|+++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 57899999999999999998877667999998642 124567776432 1115789999996
Q ss_pred cccccC----------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 VFDHAL----------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ~l~h~~----------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+.... +-...+..+.++|+|||.+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 332111 22346788899999999987753
No 157
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.37 E-value=2.7e-06 Score=75.95 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=56.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------Cc---eeeecCCCCCCCC-----CCeeEEEecccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------PL---VIKGDFHAQPFDN-----GTFDFEFSNVFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~~---~~~aDa~~LPf~d-----~SFD~V~s~~l~ 177 (258)
..+.+|||+|||||.++..+++.|...|+|+|.++.+ +. +...|+..+..++ ..+|+++.. +
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS-~- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFIS-L- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEee-h-
Confidence 3677899999999999999998887789999987521 11 2223444332222 366766653 1
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
...+..+.+.|+| |.+++.+
T Consensus 152 -----~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 152 -----ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred -----HhHHHHHHHHhCc-CeEEEEc
Confidence 2246789999999 8887765
No 158
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.37 E-value=7.9e-07 Score=83.29 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEec--
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSN-- 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~-- 174 (258)
.+-.+..|||||||||.++..-++.|..+|+|||.+.- -..++++.++++-.|-+..|+|+|.
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 34578899999999999999888999889999997531 1235666666555557899999994
Q ss_pred --c--ccccCChHHHHHHHHhcccCCcEEE
Q 025071 175 --V--FDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 175 --~--l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
. ++.+.+ .++-.=-|.|+|||.++
T Consensus 137 Gy~Ll~EsMld--sVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLD--SVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhh--hhhhhhhhccCCCceEc
Confidence 2 233333 23333457899999754
No 159
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.35 E-value=4.8e-06 Score=80.18 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC----C
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA----Q 161 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~----L 161 (258)
..+++.+.+...+.++.+|||+|||+|..+..|++.+ ..|+|+|+++. ...++.+|+.+ +
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 3444444443334566899999999999999998764 48999998642 12467788754 3
Q ss_pred CCCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 162 PFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 162 Pf~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++++++||+|+.+-=.- --...+++++.+ ++|++.+++.
T Consensus 357 ~~~~~~~D~vi~dPPr~-G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRK-GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HhcCCCCCEEEECcCCC-CCCHHHHHHHHh-cCCCEEEEEc
Confidence 46677899999851000 002455566665 8999877774
No 160
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.34 E-value=1.5e-06 Score=83.34 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=61.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCCC--C--CCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQP--F--DNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~LP--f--~d~SFD~V~ 172 (258)
.++.+|||+|||+|.++.+.+..|..+|+++|+++. ...++++|+.+.- + .+++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 357899999999999887655556668999998641 1236677775431 2 356899999
Q ss_pred ec--cccccC--------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 173 SN--VFDHAL--------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~--~l~h~~--------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++ .+..-. .-...+....++|||||.++...
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 96 322110 11223345789999999988753
No 161
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.34 E-value=3.7e-06 Score=73.49 Aligned_cols=89 Identities=9% Similarity=-0.000 Sum_probs=57.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCC-CCCCCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHA-QPFDNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~-LPf~d~SFD~V~s~-~l~ 177 (258)
++.+|||+|||+|..+..+...+..+|+++|.++. ...++++|+.+ ++-.+++||+|+++ =+.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 56799999999999997544445568999998642 12356677654 33335679999996 211
Q ss_pred ccCChHHHHHHHHh--cccCCcEEEEEec
Q 025071 178 HALYPWKFVGEIER--TLKPAGVCVLHVA 204 (258)
Q Consensus 178 h~~~p~~~l~Ei~R--VLKPGG~lii~v~ 204 (258)
. .....+++.+.. +|+|+|++++..+
T Consensus 133 ~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 133 K-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 1 112233343433 4788898888643
No 162
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.33 E-value=1.5e-06 Score=79.01 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=52.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
+.+++...+.++.+|||||||+|..+..|++.+. +|+|+|+++. ...++.+|+.++++++-.+|.|+
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv 110 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVV 110 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEE
Confidence 3334333456778999999999999999988764 8999998752 23478899999998764468888
Q ss_pred ec
Q 025071 173 SN 174 (258)
Q Consensus 173 s~ 174 (258)
+|
T Consensus 111 ~N 112 (272)
T PRK00274 111 AN 112 (272)
T ss_pred Ee
Confidence 86
No 163
>PLN02672 methionine S-methyltransferase
Probab=98.32 E-value=3.3e-06 Score=89.52 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=73.0
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------------------CCceeeecCCCCCC
Q 025071 116 ESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------------------PPLVIKGDFHAQPF 163 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------------------~~~~~~aDa~~LPf 163 (258)
+.+|||+|||+|..+..++... ...|+|+|+++. ...++++|..+. +
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 4689999999999999988653 358999998641 123566776543 3
Q ss_pred CC--CCeeEEEec--ccc-------------cc-------------CCh-----------HHHHHHHHhcccCCcEEEEE
Q 025071 164 DN--GTFDFEFSN--VFD-------------HA-------------LYP-----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 164 ~d--~SFD~V~s~--~l~-------------h~-------------~~p-----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+ ..||+|+|| .+. |- .+. .+.+.+..++|||||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 33 369999997 221 10 001 45678899999999999987
Q ss_pred eccccCcCcCCCCCCCChhHHH-HHhhcCceEEee
Q 025071 203 VALSRRADKYSANDLFSVKPLV-KLFRESELVAVR 236 (258)
Q Consensus 203 v~~~~~~~~y~~~~~~s~~~l~-~lf~~~~~~~v~ 236 (258)
+... -.+.+. ++|++.|+..+.
T Consensus 278 iG~~------------q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 278 MGGR------------PGQAVCERLFERRGFRITK 300 (1082)
T ss_pred ECcc------------HHHHHHHHHHHHCCCCeeE
Confidence 6421 135677 588877754433
No 164
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.31 E-value=4.6e-06 Score=73.88 Aligned_cols=124 Identities=21% Similarity=0.300 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------C-----CceeeecCCCCCCCCCCeeEEEec-cccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------P-----PLVIKGDFHAQPFDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------~-----~~~~~aDa~~LPf~d~SFD~V~s~-~l~h 178 (258)
...++||+|||.|+.+..|--.-+..|--+|..+. . ..+.+...+++--+.+++|+|++. ++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 34689999999999998654322567777775421 0 123333444444456799999996 8888
Q ss_pred cCChH--HHHHHHHhcccCCcEEEEEeccccCc-CcCCCCC--C-CChhHHHHHhhcCceEEeeee
Q 025071 179 ALYPW--KFVGEIERTLKPAGVCVLHVALSRRA-DKYSAND--L-FSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 179 ~~~p~--~~l~Ei~RVLKPGG~lii~v~~~~~~-~~y~~~~--~-~s~~~l~~lf~~~~~~~v~~v 238 (258)
+.|.+ .+++.+...|+|||.+++=.+.+..+ +.|...| + .+.+.+.++|+++|+.-+...
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 88654 67899999999999999865444332 1333332 2 477889999999998766644
No 165
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.28 E-value=2.2e-06 Score=76.49 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=63.1
Q ss_pred CEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC--------------C-CCceeeecCCCC---CCCCCCeeEEEecc--
Q 025071 117 SKALSIGARVGQEVAALKLV-GVSDSIGIDLVP--------------R-PPLVIKGDFHAQ---PFDNGTFDFEFSNV-- 175 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~--------------~-~~~~~~aDa~~L---Pf~d~SFD~V~s~~-- 175 (258)
..+||||||.|.....+|+. +....+|||+.. . ...+++.|+..+ =++++|.|-|+.+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999874 445799999742 1 223566776543 24667999998751
Q ss_pred ----ccccC---ChHHHHHHHHhcccCCcEEEEEec
Q 025071 176 ----FDHAL---YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 176 ----l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-.|.. -...+++++.|+|||||.+.+.+.
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 12211 124678999999999999999753
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.27 E-value=3.2e-06 Score=76.27 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCeeEEE
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFDFEF 172 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD~V~ 172 (258)
.+++...+.++.+|||||||+|..+..+.+.+ .+|+|+|+++. ...++++|+.+++++ .||.|+
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv 96 (258)
T PRK14896 20 RIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVV 96 (258)
T ss_pred HHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEE
Confidence 33433345677899999999999999998875 48999998631 134788999998876 489999
Q ss_pred ec
Q 025071 173 SN 174 (258)
Q Consensus 173 s~ 174 (258)
+|
T Consensus 97 ~N 98 (258)
T PRK14896 97 SN 98 (258)
T ss_pred Ec
Confidence 97
No 167
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=3.5e-06 Score=75.80 Aligned_cols=139 Identities=19% Similarity=0.271 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC-------------------C-------------C----------
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR-------------------P-------------P---------- 151 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~-------------------~-------------~---------- 151 (258)
.+..+|||||-.|.++..+++ .|...++|+||.+. . .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 356799999999999999987 57778999997421 0 0
Q ss_pred -------------ceeeecCCCCCCCCCCeeEEEec------cccccCC-hHHHHHHHHhcccCCcEEEEEecccc----
Q 025071 152 -------------LVIKGDFHAQPFDNGTFDFEFSN------VFDHALY-PWKFVGEIERTLKPAGVCVLHVALSR---- 207 (258)
Q Consensus 152 -------------~~~~aDa~~LPf~d~SFD~V~s~------~l~h~~~-p~~~l~Ei~RVLKPGG~lii~v~~~~---- 207 (258)
..+....+-|-+....||+|+|- ++.|..+ -.++++.|+|.|.|||++++. |++-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpWksY~ 216 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPWKSYK 216 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCchHHHH
Confidence 00111111224456789999983 4555443 346889999999999999985 3321
Q ss_pred ----CcCcCC---CCCCCChhHHHHHhhcC--ceEEeeee------cCCCCe-EEEEEEeCCc
Q 025071 208 ----RADKYS---ANDLFSVKPLVKLFRES--ELVAVRKV------DGFGLD-TEVVFRKKKK 254 (258)
Q Consensus 208 ----~~~~y~---~~~~~s~~~l~~lf~~~--~~~~v~~v------~g~~l~-~~~~f~K~~~ 254 (258)
...... .+.....+....++.+. ++..+... ..-+.+ +..+|+|++.
T Consensus 217 kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~R~i~~y~Kk~~ 279 (288)
T KOG2899|consen 217 KAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFDRPILLYRKKLH 279 (288)
T ss_pred HHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCccccceeeeeeccCC
Confidence 000111 12224566677777655 33322222 122333 5788888554
No 168
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.22 E-value=5e-06 Score=72.61 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=53.7
Q ss_pred CCCEEEEECCCCCHHHHHH----Hh-----cC-CCcEEEEeCCCC-----------------------------------
Q 025071 115 NESKALSIGARVGQEVAAL----KL-----VG-VSDSIGIDLVPR----------------------------------- 149 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L----~~-----~g-~~~v~GvD~s~~----------------------------------- 149 (258)
..-+|+..||+||.....| .+ .+ .-+++|+|+++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999965333 33 11 126999998631
Q ss_pred --------CCceeeecCCCCCCCCCCeeEEEe-ccccccCCh--HHHHHHHHhcccCCcEEEEEe
Q 025071 150 --------PPLVIKGDFHAQPFDNGTFDFEFS-NVFDHALYP--WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 150 --------~~~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v 203 (258)
...+.+.|..+.+...+.||+|+| |++-++..+ .++++.+++.|+|||++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 012455566664445679999999 677666533 468899999999999999953
No 169
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.19 E-value=8.6e-06 Score=73.03 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=50.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCCCee--
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNGTFD-- 169 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~SFD-- 169 (258)
+.+++.....++.+|||||||+|..+..|++.+. .++|+|+++. ...++.+|+.++|++ +||
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCc
Confidence 3444433455778999999999999999998764 6999998642 124678899998886 566
Q ss_pred -EEEec
Q 025071 170 -FEFSN 174 (258)
Q Consensus 170 -~V~s~ 174 (258)
.|++|
T Consensus 96 ~~vvsN 101 (253)
T TIGR00755 96 LKVVSN 101 (253)
T ss_pred ceEEEc
Confidence 77776
No 170
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.15 E-value=3e-05 Score=73.74 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCC-CCCCeeEEEec-ccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPF-DNGTFDFEFSN-VFD 177 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf-~d~SFD~V~s~-~l~ 177 (258)
++.+|||+|||+|.++..++..+ ..|+|+|+++. ...+.++|+.+..- ..++||+|+.+ =-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999888766 58999998642 12367777754321 12469999986 101
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCC
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFG 242 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~ 242 (258)
. -...+++.+. -++|++.+++..... .+ .+.+..+ ....+.++..+|=|.
T Consensus 312 G--~~~~~l~~l~-~~~p~~ivyvsc~p~---------Tl--aRDl~~L-~gy~l~~~~~~DmFP 361 (374)
T TIGR02085 312 G--IGKELCDYLS-QMAPKFILYSSCNAQ---------TM--AKDIAEL-SGYQIERVQLFDMFP 361 (374)
T ss_pred C--CcHHHHHHHH-hcCCCeEEEEEeCHH---------HH--HHHHHHh-cCceEEEEEEeccCC
Confidence 1 1134455554 479999888864311 11 2445555 445567777776443
No 171
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.13 E-value=1.5e-05 Score=77.65 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=57.5
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-----CCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 116 ESKALSIGARVGQEVAALKLVG-----VSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-----~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
+..|||||||+|-++....+.| ..+|++|+.++. ...++.+|.+++..+. ..|+|+|.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 4689999999999986554433 358999997642 2347889999887765 89999995
Q ss_pred ---c-ccccCChHHHHHHHHhcccCCcEEE
Q 025071 175 ---V-FDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 175 ---~-l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
+ .++-..|+ .+....|.|||||+++
T Consensus 266 lLGsfg~nEl~pE-~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPE-CLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHH-HHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHH-HHHHHHhhcCCCCEEe
Confidence 2 23434455 5788899999998653
No 172
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.12 E-value=2.9e-06 Score=71.84 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=54.5
Q ss_pred CCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCCCC---C-ceeeecCCC----------CCCCCCCeeEEEecc-cc-
Q 025071 116 ESKALSIGARVGQEVAALKLVG--VSDSIGIDLVPRP---P-LVIKGDFHA----------QPFDNGTFDFEFSNV-FD- 177 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~~~---~-~~~~aDa~~----------LPf~d~SFD~V~s~~-l~- 177 (258)
+.+|||+||++|.++..+.+.+ ...|+|+|+.+.. . ...++|..+ ++-..+.||+|+|.. ..
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~ 103 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNV 103 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE------
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccCC
Confidence 4899999999999999998876 4589999987651 1 223333221 111127999999952 11
Q ss_pred ---ccCChH-------HHHHHHHhcccCCcEEEEEec
Q 025071 178 ---HALYPW-------KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 178 ---h~~~p~-------~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+..+.. ..+.=+.+.|||||.+++-+-
T Consensus 104 ~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 104 SGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp -SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 111221 123334467999998888653
No 173
>PLN02476 O-methyltransferase
Probab=98.11 E-value=4.3e-05 Score=70.17 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CC-C----CCCCe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QP-F----DNGTF 168 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LP-f----~d~SF 168 (258)
..++.+|||||||+|..+.+++.. + ...++++|.++. ...++.+|+.+ || + .+++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 346789999999999999988762 2 236999998642 12356676643 22 1 24689
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+|+..+-. .+-..+++++.+.|+|||.+++-
T Consensus 196 D~VFIDa~K--~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDADK--RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEe
Confidence 999985311 12345678999999999998874
No 174
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=98.11 E-value=2.3e-05 Score=66.64 Aligned_cols=120 Identities=20% Similarity=0.285 Sum_probs=79.2
Q ss_pred CCEEEEECCCCCHHHHHHH-hcCCCcEEEEeCCCCCCc--e--eeecCCCCCC------CCCCeeEEEe-ccccccC---
Q 025071 116 ESKALSIGARVGQEVAALK-LVGVSDSIGIDLVPRPPL--V--IKGDFHAQPF------DNGTFDFEFS-NVFDHAL--- 180 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~-~~g~~~v~GvD~s~~~~~--~--~~aDa~~LPf------~d~SFD~V~s-~~l~h~~--- 180 (258)
+++++-+|...= +...++ +.|.++|..|+.++.... + ....+....| -.++||++.| ++++|.-
T Consensus 2 ~~~g~V~GS~~P-wvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGR 80 (177)
T PF03269_consen 2 GKSGLVVGSMQP-WVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGR 80 (177)
T ss_pred CceEEEEecCCc-hhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhccccccc
Confidence 456777776633 222222 356677888885432110 0 0011111112 2478999988 4787752
Q ss_pred -----Ch---HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEee
Q 025071 181 -----YP---WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 181 -----~p---~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~ 236 (258)
|| .+++.++.++|||||.+++.+|.....-.|...++|+...+.-+|...+++...
T Consensus 81 YGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tf 144 (177)
T PF03269_consen 81 YGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTF 144 (177)
T ss_pred cCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeee
Confidence 33 357789999999999999999977655567778899999999999999888654
No 175
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.00 E-value=5.2e-05 Score=65.59 Aligned_cols=97 Identities=22% Similarity=0.179 Sum_probs=66.4
Q ss_pred HHHHHHHhcCCCCCC-EEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNES-KALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~-~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d 165 (258)
+++.+.-...+.... +++|||+|.|.-+.-|+- .+..+++-+|.... ...++.+.+++ +-..
T Consensus 35 i~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~ 113 (184)
T PF02527_consen 35 ILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYR 113 (184)
T ss_dssp HHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTT
T ss_pred HHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccC
Confidence 333343334444444 899999999998877764 33457999996531 23467777777 6678
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++||+|++.++. .....+.-+.+.|||||.+++.-
T Consensus 114 ~~fd~v~aRAv~---~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 114 ESFDVVTARAVA---PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp T-EEEEEEESSS---SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCccEEEeehhc---CHHHHHHHHHHhcCCCCEEEEEc
Confidence 899999997654 34567778888999999988863
No 176
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=8e-05 Score=65.55 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=63.1
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCCC----CceeeecCCCCCC--------CCCCeeEEEec--
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPRP----PLVIKGDFHAQPF--------DNGTFDFEFSN-- 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~~----~~~~~aDa~~LPf--------~d~SFD~V~s~-- 174 (258)
..+.++..|+|+||-+|.++..+++. |. ..|+|+|+.+-. ..++++|+..=+. ....+|+|+|.
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 45678899999999999999988764 32 249999987643 3467888764442 34457999984
Q ss_pred -------cccccCC--h-HHHHHHHHhcccCCcEEEEEe
Q 025071 175 -------VFDHALY--P-WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 -------~l~h~~~--p-~~~l~Ei~RVLKPGG~lii~v 203 (258)
..+|... - ..++.=+.++|+|||.+++-+
T Consensus 121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 1233221 1 123344456999999998854
No 177
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.98 E-value=3.5e-05 Score=66.05 Aligned_cols=91 Identities=22% Similarity=0.213 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc--CCC--------cEEEEeCCCC----------------CCceeeecCCCCCCC
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV--GVS--------DSIGIDLVPR----------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~--g~~--------~v~GvD~s~~----------------~~~~~~aDa~~LPf~ 164 (258)
....++..+||--||+|.+..+.+.. ... .++|.|+++. ...+.++|+.++|+.
T Consensus 24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~ 103 (179)
T PF01170_consen 24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP 103 (179)
T ss_dssp TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT
T ss_pred hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc
Confidence 34567789999999999987655432 222 2889998642 124678899999999
Q ss_pred CCCeeEEEec---ccccc--CCh----HHHHHHHHhcccCCcEEEEE
Q 025071 165 NGTFDFEFSN---VFDHA--LYP----WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 165 d~SFD~V~s~---~l~h~--~~p----~~~l~Ei~RVLKPGG~lii~ 202 (258)
++++|.|+++ ..... .+. ..+++|+.|+|+| ..++++
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 9999999996 11110 011 2457999999999 444443
No 178
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.98 E-value=8.1e-06 Score=76.38 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-----------C------Cce-eeecCCCCC----CCCCCeeEE
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-----------P------PLV-IKGDFHAQP----FDNGTFDFE 171 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-----------~------~~~-~~aDa~~LP----f~d~SFD~V 171 (258)
.+.+|||||||+|.+...|+.. ...+++|+|+++. . ..+ .+.|...+. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999999887776542 2247999998642 1 112 122322221 246799999
Q ss_pred Eec--cccccCC----hHHHHHHH----------------HhcccCCcEEEEEeccccCcCcCC---------CCCCCCh
Q 025071 172 FSN--VFDHALY----PWKFVGEI----------------ERTLKPAGVCVLHVALSRRADKYS---------ANDLFSV 220 (258)
Q Consensus 172 ~s~--~l~h~~~----p~~~l~Ei----------------~RVLKPGG~lii~v~~~~~~~~y~---------~~~~~s~ 220 (258)
+|| .+..... ..+-.+.+ .+.+-+||.+.++.+.-.....+. ...--++
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l 273 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL 273 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence 998 2222111 11111122 234457777655533221111110 0111278
Q ss_pred hHHHHHhhcCceEEeeeec
Q 025071 221 KPLVKLFRESELVAVRKVD 239 (258)
Q Consensus 221 ~~l~~lf~~~~~~~v~~v~ 239 (258)
+.+.+.+++.|...+..+.
T Consensus 274 ~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 274 PPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred HHHHHHHHHcCCceEEEEE
Confidence 8999999999887666654
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.95 E-value=2e-05 Score=77.92 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CCceeeecCCCCC--CCCCCeeEEEeccc
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PPLVIKGDFHAQP--FDNGTFDFEFSNVF 176 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~~~~~aDa~~LP--f~d~SFD~V~s~~l 176 (258)
.+..+||||||.|.....++.. ....++|+|+... ...++..|+..+. |+++|+|.|+.+.=
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4568999999999999888864 4457999997531 1123445553222 78999999988511
Q ss_pred ------cccC---ChHHHHHHHHhcccCCcEEEEEec
Q 025071 177 ------DHAL---YPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 177 ------~h~~---~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
.|.. -...++++++|+|||||.+.+.+.
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 1211 124678999999999999998653
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.3e-05 Score=68.25 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHh-cC--CCcEEEEeCCC-------------------------CC
Q 025071 99 VFSRFFQDLKQRHFLFNESKALSIGARVGQEVAALKL-VG--VSDSIGIDLVP-------------------------RP 150 (258)
Q Consensus 99 ~~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~-~g--~~~v~GvD~s~-------------------------~~ 150 (258)
.++.+++.|.. .+.+|.+.||+|.|+|.++..++. .| ...++|||..+ ..
T Consensus 68 mha~~le~L~~--~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 68 MHATALEYLDD--HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHH--hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 34555555532 367899999999999999876663 22 12458988421 11
Q ss_pred CceeeecCCCCCCCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 151 PLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 151 ~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
..++++|....--+.+.||.|.+++ ..++..+|+..-|||||.+++-+
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGA-----AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEcc-----CccccHHHHHHhhccCCeEEEee
Confidence 2467889888777889999999962 11233478889999999998854
No 181
>PRK04148 hypothetical protein; Provisional
Probab=97.94 E-value=3.3e-05 Score=63.70 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=46.3
Q ss_pred CCCEEEEECCCCCH-HHHHHHhcCCCcEEEEeCCCCC--------CceeeecCCCCCCC-CCCeeEEEe
Q 025071 115 NESKALSIGARVGQ-EVAALKLVGVSDSIGIDLVPRP--------PLVIKGDFHAQPFD-NGTFDFEFS 173 (258)
Q Consensus 115 ~~~~VLDIGcGtG~-~~~~L~~~g~~~v~GvD~s~~~--------~~~~~aDa~~LPf~-d~SFD~V~s 173 (258)
++.+|||||||+|. .+..|++.|. +|+|+|+++.. ..++++|..+-+++ -+.+|+|.+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE
Confidence 45789999999996 8889998886 89999998642 24778888766654 367899998
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.90 E-value=3.5e-05 Score=71.22 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=50.9
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGT 167 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~S 167 (258)
.+.+++...+.++.+|||||||+|..+..|.+.+ .+|+|+|+++. ...++.+|+.+.+++ .
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--Y 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--c
Confidence 3344444456678899999999999999988765 47999998631 124678888776654 6
Q ss_pred eeEEEec
Q 025071 168 FDFEFSN 174 (258)
Q Consensus 168 FD~V~s~ 174 (258)
||.|++|
T Consensus 102 ~d~VvaN 108 (294)
T PTZ00338 102 FDVCVAN 108 (294)
T ss_pred cCEEEec
Confidence 8999987
No 183
>PLN02823 spermine synthase
Probab=97.90 E-value=4.6e-05 Score=71.72 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC-------------------CCceeeecCCC-CCCCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR-------------------PPLVIKGDFHA-QPFDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~-------------------~~~~~~aDa~~-LPf~d~SFD~V~ 172 (258)
.++.+||.||+|.|..+.++.+. +..+|+.+|+++. ...++.+|+.+ +.-.+++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999877664 4567999998531 11355666543 233467999999
Q ss_pred ecccccc-------CChHHHHH-HHHhcccCCcEEEEEe
Q 025071 173 SNVFDHA-------LYPWKFVG-EIERTLKPAGVCVLHV 203 (258)
Q Consensus 173 s~~l~h~-------~~p~~~l~-Ei~RVLKPGG~lii~v 203 (258)
+...+.. ..-..+++ .+.+.|+|||++++..
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9643321 11245677 8999999999988764
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.86 E-value=5.1e-05 Score=71.38 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEecccccc
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~ 179 (258)
.+..|||||||+|.+....+..|..+|++|+.++- ...++.|..+++.++ +..|++++.-+..+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhh
Confidence 56789999999999998888889889999997631 223667777777666 46899999633333
Q ss_pred CChHHHH---HHHHhcccCCcEEEEEe
Q 025071 180 LYPWKFV---GEIERTLKPAGVCVLHV 203 (258)
Q Consensus 180 ~~p~~~l---~Ei~RVLKPGG~lii~v 203 (258)
..-++.+ -...|.|||.|.++=++
T Consensus 256 L~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 3333332 24669999999886554
No 185
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.86 E-value=5e-05 Score=66.74 Aligned_cols=86 Identities=24% Similarity=0.355 Sum_probs=59.9
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CC-C----CCCCeeE
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QP-F----DNGTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LP-f----~d~SFD~ 170 (258)
++.+||+|||++|..+.++++. + ..+|+.+|.++. ...++.+|+.+ +| + +.+.||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 5679999999999999999863 2 258999998642 12356676642 12 1 1358999
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+..+-- .+-..++..+.+.|+|||.+++-
T Consensus 125 VFiDa~K--~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 125 VFIDADK--RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEESTG--GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcccc--cchhhHHHHHhhhccCCeEEEEc
Confidence 9985311 12345678899999999999885
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.86 E-value=9.4e-05 Score=63.95 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=57.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCC-CC-C-CCC-CeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHA-QP-F-DNG-TFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~-LP-f-~d~-SFD~V~s~ 174 (258)
.+.+|||++||+|.++.++...|...|+++|.++. ...++++|+.+ +. + ..+ .||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999999999988888778999998642 12356677633 22 1 222 47888885
Q ss_pred -cccccCChHHHHHHH--HhcccCCcEEEEEec
Q 025071 175 -VFDHALYPWKFVGEI--ERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei--~RVLKPGG~lii~v~ 204 (258)
-+.. ......+.-+ ...|++||.+++...
T Consensus 129 PPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1211 1123333333 347899998887643
No 187
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=7.2e-05 Score=65.07 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=45.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
-.+..|+|+|||||.++...+-.|...|+|+|+.+. ...++++|+... +..||.|++|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence 367789999999999998888889889999998653 124667777654 3568888887
No 188
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.84 E-value=5.5e-05 Score=67.24 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=60.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC----------------Cceee-ecCCC-CC-CCCCCeeEEE
Q 025071 114 FNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP----------------PLVIK-GDFHA-QP-FDNGTFDFEF 172 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~----------------~~~~~-aDa~~-LP-f~d~SFD~V~ 172 (258)
..+++||+||++.|..+.+++.. + ..+++.+|.++.. ..++. +|+.+ +. +.+++||+||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 46789999999999999988752 3 3479999986421 12333 34321 11 5679999999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+ .-. +-..++.++.+.|+|||.+++-
T Consensus 138 IDa-dK~-~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 138 IDA-DKA-DYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EeC-Chh-hCHHHHHHHHHHhCCCcEEEEe
Confidence 842 111 2245789999999999999884
No 189
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=0.00018 Score=66.06 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=60.3
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCCC----------------cee----eec-CCCCCCCCCCeeEEE
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRPP----------------LVI----KGD-FHAQPFDNGTFDFEF 172 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~~----------------~~~----~aD-a~~LPf~d~SFD~V~ 172 (258)
.+..+||+|||+|..+..+.. .+...|+++|.++... .++ ..| ....|..++..|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 456899999999999887764 4555799999875311 122 222 234456689999999
Q ss_pred ec--cccccC-----------ChH--------------HHHHHHHhcccCCcEEEEEec
Q 025071 173 SN--VFDHAL-----------YPW--------------KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~--~l~h~~-----------~p~--------------~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|| .+.+-. .|. .+..=+.|.|+|||.+.+.+.
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 97 332211 121 234567899999999998754
No 190
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.82 E-value=0.00018 Score=65.82 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCCEEEEECCCCCHHHH----HHHhcC------CCcEEEEeCCC----------CC------------------------
Q 025071 115 NESKALSIGARVGQEVA----ALKLVG------VSDSIGIDLVP----------RP------------------------ 150 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~----~L~~~g------~~~v~GvD~s~----------~~------------------------ 150 (258)
..-+|+..||+||.... .|.+.+ .-.|+|.|++. ++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 35689999999999643 333432 13689999852 11
Q ss_pred ----------CceeeecCCCCCCCCCCeeEEEe-ccccccCC--hHHHHHHHHhcccCCcEEEEEe
Q 025071 151 ----------PLVIKGDFHAQPFDNGTFDFEFS-NVFDHALY--PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 151 ----------~~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v 203 (258)
..+.+.|...-++..+.||+|+| |++-.+.. ..+++..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 01223333333324456999999 66655543 3568899999999999999953
No 191
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.81 E-value=0.00013 Score=62.00 Aligned_cols=92 Identities=23% Similarity=0.266 Sum_probs=55.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC---------------CC--ceeeecCCC-C--C-CCCCCeeE
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR---------------PP--LVIKGDFHA-Q--P-FDNGTFDF 170 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~---------------~~--~~~~aDa~~-L--P-f~d~SFD~ 170 (258)
...+.+||++|||+|-.+..++.. +..+|+..|..+. .. .+..-|=.+ . + .+.++||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 346789999999999999888887 6678999997531 00 111111100 0 1 23468999
Q ss_pred EEec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 171 EFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 171 V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+.+ ++..-..-...++=+.+.|+|+|.+++...
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9985 444334445677889999999999666543
No 192
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.75 E-value=0.00021 Score=70.12 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--CCC----cee---ee--
Q 025071 90 TRDWERKVRVFSRFFQDLKQRHFLFNE--SKALSIGARVGQEVAALKLVGVSDSIGIDLVP--RPP----LVI---KG-- 156 (258)
Q Consensus 90 ~~~w~~~~~~~~~~~~~L~~~~~l~~~--~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--~~~----~~~---~a-- 156 (258)
+.-|..++..|-.+.... +..+ ..|+|+.+|.|.++.+|.+.+ |.-+...+ .+. .+. .|
T Consensus 343 t~~Wk~~V~~Y~~l~~~~-----i~~~~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGLIG~y 414 (506)
T PF03141_consen 343 TKHWKKRVSHYKKLLGLA-----IKWGRIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGLIGVY 414 (506)
T ss_pred HHHHHHHHHHHHHhhccc-----ccccceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhcccchhc
Confidence 356777777665544311 2222 369999999999999998765 33333221 111 111 11
Q ss_pred --cCCCCCCCCCCeeEEEec-cccccC---ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcC
Q 025071 157 --DFHAQPFDNGTFDFEFSN-VFDHAL---YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRES 230 (258)
Q Consensus 157 --Da~~LPf~d~SFD~V~s~-~l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~ 230 (258)
=.+..|+=+.++|+|.++ .|.+.. +-..++-||-|+|+|||.+++--. ..-..++..++++.
T Consensus 415 hDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~------------~~vl~~v~~i~~~l 482 (506)
T PF03141_consen 415 HDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT------------VDVLEKVKKIAKSL 482 (506)
T ss_pred cchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc------------HHHHHHHHHHHHhC
Confidence 135677778999999996 443332 456678899999999999998421 11257788888888
Q ss_pred ceEEeeee--cC-CCCeEEEEEEe
Q 025071 231 ELVAVRKV--DG-FGLDTEVVFRK 251 (258)
Q Consensus 231 ~~~~v~~v--~g-~~l~~~~~f~K 251 (258)
.+...... +| ++-++.++-+|
T Consensus 483 rW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 483 RWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred cceEEEEecCCCCCCCceEEEEEC
Confidence 76533322 23 22335555554
No 193
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.75 E-value=0.0002 Score=67.61 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=61.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------CceeeecCCCCCCCCCCeeEEEeccccccCChH
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------PLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPW 183 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~ 183 (258)
.+.++.++||+||++|.++..|.+.|. .|+|||..+-. .....+|.....-+.+.+|+++|.+.+ .|.
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~ 283 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA 283 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH
Confidence 356889999999999999999999986 89999965422 123455544432236789999996443 588
Q ss_pred HHHHHHHhcccCC
Q 025071 184 KFVGEIERTLKPA 196 (258)
Q Consensus 184 ~~l~Ei~RVLKPG 196 (258)
+.++=|.+.|..|
T Consensus 284 rva~lm~~Wl~~g 296 (357)
T PRK11760 284 RVAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888888776
No 194
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.74 E-value=3.8e-05 Score=67.55 Aligned_cols=95 Identities=23% Similarity=0.264 Sum_probs=51.3
Q ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHH-hcCCCcEEEEeCCCC------------------------CCceeeecCCCCC
Q 025071 108 KQRHFLFNESKALSIGARVGQEVAALK-LVGVSDSIGIDLVPR------------------------PPLVIKGDFHAQP 162 (258)
Q Consensus 108 ~~~~~l~~~~~VLDIGcGtG~~~~~L~-~~g~~~v~GvD~s~~------------------------~~~~~~aDa~~LP 162 (258)
++...+.++...+|+|||.|+.....+ ..++..++||++.+. +..+..+|+.+.+
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 333456788999999999999876554 357777999998531 1123456655444
Q ss_pred CCC---CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 163 FDN---GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 163 f~d---~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+.+ ..-|+|++|...--++-...+.++..-||||-+++-+
T Consensus 115 ~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 321 3468999963322112234568888899998776543
No 195
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=1.5e-05 Score=67.51 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=54.2
Q ss_pred EEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC-ceeeecCCCCCCCCCCeeEEEec-cccccCCh--HHHHHHHHhccc
Q 025071 119 ALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP-LVIKGDFHAQPFDNGTFDFEFSN-VFDHALYP--WKFVGEIERTLK 194 (258)
Q Consensus 119 VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~-~~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p--~~~l~Ei~RVLK 194 (258)
.+-||||.=+.- -|+ +-+|....+. ..++-.....+|.|+|.|+|.+. +++|+... ..+++|++|+||
T Consensus 6 kv~ig~G~~r~n-----pgW---i~~d~ed~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr 77 (185)
T COG4627 6 KVKIGAGGKRVN-----PGW---IITDVEDRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR 77 (185)
T ss_pred EEEEeccccccC-----CCc---eeeehhcccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 578999964321 122 2344432221 22222345689999999999995 78887643 357899999999
Q ss_pred CCcEEEEEecc
Q 025071 195 PAGVCVLHVAL 205 (258)
Q Consensus 195 PGG~lii~v~~ 205 (258)
|||++-+.+|.
T Consensus 78 p~G~LriAvPd 88 (185)
T COG4627 78 PGGKLRIAVPD 88 (185)
T ss_pred cCcEEEEEcCC
Confidence 99999999875
No 196
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.68 E-value=0.00017 Score=70.87 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=62.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC---------------CceeeecCCCCC-CCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP---------------PLVIKGDFHAQP-FDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~---------------~~~~~aDa~~LP-f~d~SFD~V~s~ 174 (258)
..++.+|||++||+|.-+..+++. + ...++++|+++.. ..+...|+..++ ...+.||.|+..
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 467899999999999998888763 2 2479999987531 124556766553 334689999953
Q ss_pred -------cccccC------Ch----------HHHHHHHHhcccCCcEEEEE
Q 025071 175 -------VFDHAL------YP----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 -------~l~h~~------~p----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
++..-+ .+ .+.+..+.+.|||||+++..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 233211 11 34678889999999988664
No 197
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.64 E-value=0.00013 Score=69.71 Aligned_cols=84 Identities=21% Similarity=0.230 Sum_probs=62.1
Q ss_pred CCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCC---------------CceeeecCCCCCCCCCCeeEEEecccccc
Q 025071 116 ESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRP---------------PLVIKGDFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~d~SFD~V~s~~l~h~ 179 (258)
+.+|||++||+|..+..++. .+...|+++|+++.. ..+.++|+..+....+.||+|+.+-+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 46899999999999988865 455589999987421 12567777654322467999998632
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-.|..++....+.++|||+++++
T Consensus 135 Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEE
Confidence 23567777777889999999998
No 198
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.61 E-value=0.00024 Score=65.20 Aligned_cols=137 Identities=21% Similarity=0.208 Sum_probs=76.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHh--------cCCCcEEEEeCCCCC-----------------CceeeecCCCCCCC--
Q 025071 112 FLFNESKALSIGARVGQEVAALKL--------VGVSDSIGIDLVPRP-----------------PLVIKGDFHAQPFD-- 164 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~--------~g~~~v~GvD~s~~~-----------------~~~~~aDa~~LPf~-- 164 (258)
...++.+|+|-+||+|.+..++.+ .....++|+|+++.. ..+..+|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 345667899999999998766544 133579999986421 12455665544433
Q ss_pred CCCeeEEEec---ccc-c----c-CC-------------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhH
Q 025071 165 NGTFDFEFSN---VFD-H----A-LY-------------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKP 222 (258)
Q Consensus 165 d~SFD~V~s~---~l~-h----~-~~-------------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~ 222 (258)
.+.||+|+++ ... + . .+ ...++..+.+.||+||++++.+|..- -+. .. ....
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~---L~~-~~--~~~~ 196 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF---LFS-SS--SEKK 196 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH---HHG-ST--HHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh---hhc-cc--hHHH
Confidence 5799999997 211 1 0 00 12467889999999999988887421 000 00 1245
Q ss_pred HHHHh-hcCceEEeeeec-----CCCCeE-EEEEEeCCc
Q 025071 223 LVKLF-RESELVAVRKVD-----GFGLDT-EVVFRKKKK 254 (258)
Q Consensus 223 l~~lf-~~~~~~~v~~v~-----g~~l~~-~~~f~K~~~ 254 (258)
+.+.+ +++.+..+-... +.+.++ .++|+|...
T Consensus 197 iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 197 IRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp HHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred HHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 65554 444444444442 233333 788888653
No 199
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.56 E-value=4e-05 Score=67.85 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=59.8
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCC------ceeeecCCCCCCCCCCeeEEEe-ccccccCChHHHHHH
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPP------LVIKGDFHAQPFDNGTFDFEFS-NVFDHALYPWKFVGE 188 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~------~~~~aDa~~LPf~d~SFD~V~s-~~l~h~~~p~~~l~E 188 (258)
+.++||+|+|.|..+..++.. +.+|++.++|.-+. .+-+-.+.++--.|=.||+|.| +.++-..+|-+.++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~D 191 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLED 191 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHH
Confidence 468999999999988777643 34577777653110 1111112222223446999999 688888899999999
Q ss_pred HHhcccC-CcEEEEE
Q 025071 189 IERTLKP-AGVCVLH 202 (258)
Q Consensus 189 i~RVLKP-GG~lii~ 202 (258)
|+-||+| +|++++.
T Consensus 192 i~~vl~psngrviva 206 (288)
T KOG3987|consen 192 IHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHhccCCCcEEEE
Confidence 9999999 8987765
No 200
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.52 E-value=0.00025 Score=62.16 Aligned_cols=85 Identities=21% Similarity=0.231 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCC----------------CceeeecCCCCCCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.++..|+|+-||.|.++..+++. ....|+++|+++.. .....+|+..++- ++.||-|+++
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 3568899999999999999888873 24579999987531 2357889887766 8899999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
...+. ..++.++.+.+|+||++-
T Consensus 177 lp~~~---~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LPESS---LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TSSG---GGGHHHHHHHEEEEEEEE
T ss_pred ChHHH---HHHHHHHHHHhcCCcEEE
Confidence 33222 246788999999999763
No 201
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.00058 Score=63.69 Aligned_cols=150 Identities=19% Similarity=0.325 Sum_probs=89.3
Q ss_pred hhhCchhHHHHHHHHHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------
Q 025071 86 AVWTTRDWERKVRVFSRFFQDLKQRH----FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------ 149 (258)
Q Consensus 86 ~~W~~~~w~~~~~~~~~~~~~L~~~~----~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------ 149 (258)
+-|.+..-.++-..+..++..|...- .....-+||--|||.|+++..|+..|+ .+-|-+.|-.
T Consensus 117 RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~ 195 (369)
T KOG2798|consen 117 RDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYC 195 (369)
T ss_pred HHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhh
Confidence 33555444555555556666554321 112245899999999999999998886 4655553200
Q ss_pred --------------------------C---C--------------ceeeecCCCC---CCCCCCeeEEEec-cccccCCh
Q 025071 150 --------------------------P---P--------------LVIKGDFHAQ---PFDNGTFDFEFSN-VFDHALYP 182 (258)
Q Consensus 150 --------------------------~---~--------------~~~~aDa~~L---Pf~d~SFD~V~s~-~l~h~~~p 182 (258)
+ + ....||+.+. +=..++||+|+.+ -++...+-
T Consensus 196 ~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Ni 275 (369)
T KOG2798|consen 196 KQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNI 275 (369)
T ss_pred ccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHH
Confidence 0 0 0122443321 1123579999875 45666667
Q ss_pred HHHHHHHHhcccCCcEEEEEeccccC-cCcCC-CCCC---CChhHHHHHhhcCceEEee
Q 025071 183 WKFVGEIERTLKPAGVCVLHVALSRR-ADKYS-ANDL---FSVKPLVKLFRESELVAVR 236 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~~~~~-~~~y~-~~~~---~s~~~l~~lf~~~~~~~v~ 236 (258)
-.+++-|..+|||||+.+=.-|.--+ .+.+. .+.+ .+.+++..+.+..|+..++
T Consensus 276 leYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 276 LEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred HHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 78899999999999987654332111 11111 1111 4788999999888876444
No 202
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.47 E-value=0.0042 Score=57.53 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=86.2
Q ss_pred CCCEEEEECCCCCHHHH-HHHhcCC--CcEEEEeCCCCC----------------CceeeecCCCC-CCC--CCCeeEEE
Q 025071 115 NESKALSIGARVGQEVA-ALKLVGV--SDSIGIDLVPRP----------------PLVIKGDFHAQ-PFD--NGTFDFEF 172 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~-~L~~~g~--~~v~GvD~s~~~----------------~~~~~aDa~~L-Pf~--d~SFD~V~ 172 (258)
.+-+||||+||.|+... ++.+.+. ..|.-.|.++.. ..+.++|+..- .++ +-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 45699999999999754 5555442 568888876421 14677776431 011 23457776
Q ss_pred e-ccccccCChH---HHHHHHHhcccCCcEEEEEe-ccccCc---------CcC-CC--CCCCChhHHHHHhhcCceEEe
Q 025071 173 S-NVFDHALYPW---KFVGEIERTLKPAGVCVLHV-ALSRRA---------DKY-SA--NDLFSVKPLVKLFRESELVAV 235 (258)
Q Consensus 173 s-~~l~h~~~p~---~~l~Ei~RVLKPGG~lii~v-~~~~~~---------~~y-~~--~~~~s~~~l~~lf~~~~~~~v 235 (258)
. +.++-+.|-. ..++-+.+.+.|||+++.+- |.+++- ++. .. ....|-.|+.+|+..+|+.++
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 5 4566666543 35788999999999998862 222211 111 01 122588999999999999876
Q ss_pred e-eecCCCCeEEEE
Q 025071 236 R-KVDGFGLDTEVV 248 (258)
Q Consensus 236 ~-~v~g~~l~~~~~ 248 (258)
. .+|.+|..|.-.
T Consensus 295 ~q~ID~~GIFTVSl 308 (311)
T PF12147_consen 295 DQRIDEWGIFTVSL 308 (311)
T ss_pred hheeccCCceEEEe
Confidence 6 458889876433
No 203
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00046 Score=62.82 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-------------CCceeeecCCCCCCCCC-Ce
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-------------PPLVIKGDFHAQPFDNG-TF 168 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-------------~~~~~~aDa~~LPf~d~-SF 168 (258)
+++.+++...+.++..||+||+|.|.++..|.+.+. .|+++++.+. ...++.+|+...+|++. .+
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 345555555566788999999999999999998874 6999997531 13478899999999875 68
Q ss_pred eEEEec
Q 025071 169 DFEFSN 174 (258)
Q Consensus 169 D~V~s~ 174 (258)
+.|++|
T Consensus 97 ~~vVaN 102 (259)
T COG0030 97 YKVVAN 102 (259)
T ss_pred CEEEEc
Confidence 899987
No 204
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.43 E-value=0.0013 Score=56.41 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCC--CcEEEEeCCCC----------CCceeeecCCCCC-----CCCCCeeEEEecc
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGV--SDSIGIDLVPR----------PPLVIKGDFHAQP-----FDNGTFDFEFSNV 175 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~--~~v~GvD~s~~----------~~~~~~aDa~~LP-----f~d~SFD~V~s~~ 175 (258)
...|.-||++|.|||-++.++-+.|. ..+++++.++. ...++.||+..+- +.+.-||.|+|+.
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 44567899999999999999888774 46889997642 2347788887776 6789999999961
Q ss_pred -ccccC--ChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 -FDHAL--YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 -l~h~~--~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+-.++ ..-+.++++..-|.+||.++...
T Consensus 126 Pll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 126 PLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred ccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 22222 22356788888999999887753
No 205
>PRK00536 speE spermidine synthase; Provisional
Probab=97.38 E-value=0.00027 Score=64.50 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=59.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------C--------C--ceeeecCCCCCCCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------P--------P--LVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~--------~--~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
+++.+||=||-|.|..++.+.+.. .+|+-||+.+. | + .++. ... .-..++||+|+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEc
Confidence 567899999999999999988775 37888887531 0 1 1111 111 1123789999996
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++ .+..+++.++|.|+|||.++.+.
T Consensus 147 s~----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CChHHHHHHHHhcCCCcEEEECC
Confidence 43 45678899999999999999974
No 206
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.37 E-value=0.0018 Score=61.25 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=68.9
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCC-C-------C---C-----C
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQ-P-------F---D-----N 165 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~L-P-------f---~-----d 165 (258)
.+|||+|||+|.++..|++.. ..|+|+|+++. ...++++|+.++ + + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999888754 58999998642 123566776542 1 1 1 1
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCCCC--
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGFGL-- 243 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~~l-- 243 (258)
..||+|+..==..-. -..+++. +++|++++++..... .+ .+++..+.....+..+..+|-|.-
T Consensus 278 ~~~d~v~lDPPR~G~-~~~~l~~---l~~~~~ivYvsC~p~---------tl--aRDl~~L~~~Y~l~~v~~~DmFP~T~ 342 (353)
T TIGR02143 278 YNCSTIFVDPPRAGL-DPDTCKL---VQAYERILYISCNPE---------TL--KANLEQLSETHRVERFALFDQFPYTH 342 (353)
T ss_pred CCCCEEEECCCCCCC-cHHHHHH---HHcCCcEEEEEcCHH---------HH--HHHHHHHhcCcEEEEEEEcccCCCCC
Confidence 237999884000000 1233333 345888888864311 11 355666654456667777764333
Q ss_pred --eEEEEEEe
Q 025071 244 --DTEVVFRK 251 (258)
Q Consensus 244 --~~~~~f~K 251 (258)
.+.+.+++
T Consensus 343 HvE~v~lL~r 352 (353)
T TIGR02143 343 HMECGVLLER 352 (353)
T ss_pred cEEEEEEEEe
Confidence 24555543
No 207
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.37 E-value=0.00042 Score=63.01 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=68.2
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC------------------------------C-------------
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR------------------------------P------------- 150 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~------------------------------~------------- 150 (258)
.+.++||||||+--. ..|.. .-+.+++..|.++. .
T Consensus 56 ~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 567999999998443 23332 22457888886320 0
Q ss_pred -CceeeecCCCC-CCCC-----CCeeEEEec-cccccC-Ch---HHHHHHHHhcccCCcEEEEEeccccCcCcC--CCCC
Q 025071 151 -PLVIKGDFHAQ-PFDN-----GTFDFEFSN-VFDHAL-YP---WKFVGEIERTLKPAGVCVLHVALSRRADKY--SAND 216 (258)
Q Consensus 151 -~~~~~aDa~~L-Pf~d-----~SFD~V~s~-~l~h~~-~p---~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y--~~~~ 216 (258)
..++..|..+. |++. ..||+|++. +++.+. +. .++++.+.+.|||||.+++...... ..| ....
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~--t~Y~vG~~~ 212 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS--TYYMVGGHK 212 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS---SEEEETTEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc--eeEEECCEe
Confidence 01455676643 3433 359999984 554433 33 3578999999999999998743321 122 1111
Q ss_pred ---C-CChhHHHHHhhcCceEE
Q 025071 217 ---L-FSVKPLVKLFRESELVA 234 (258)
Q Consensus 217 ---~-~s~~~l~~lf~~~~~~~ 234 (258)
+ .+.+.+.+.++++|+.-
T Consensus 213 F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 213 FPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp EE---B-HHHHHHHHHHTTEEE
T ss_pred cccccCCHHHHHHHHHHcCCEE
Confidence 1 37788999999999743
No 208
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.37 E-value=0.00038 Score=62.94 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=58.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCC-CCC------CCCCee
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHA-QPF------DNGTFD 169 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~-LPf------~d~SFD 169 (258)
+..+||+||+++|..+.+++.. + ..+++.+|.++. ...++.+++.+ ||- ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 5679999999999999888753 2 247999998642 12355666532 221 136899
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
+|+..+- .- .-..++..+.+.|+|||.+++
T Consensus 159 ~iFiDad-K~-~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFVDAD-KD-NYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEecCC-HH-HhHHHHHHHHHhcCCCeEEEE
Confidence 9998532 11 123456788899999999877
No 209
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00067 Score=60.46 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------CCce--eee---c-CCCCCCCCCCeeEEEecc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------PPLV--IKG---D-FHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------~~~~--~~a---D-a~~LPf~d~SFD~V~s~~ 175 (258)
.+|++||.||-|.|.....+++.....-+-|+..+. ...+ ..+ | +.. .+|++||.|+-.+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~--L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT--LPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc--ccccCcceeEeec
Confidence 578999999999999988888765434444554431 0112 222 2 223 4689999999876
Q ss_pred c-cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 F-DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l-~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+ +|..+-..+.+.+.|.|||||++...
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 5 77777778889999999999998775
No 210
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.34 E-value=0.0024 Score=60.55 Aligned_cols=134 Identities=11% Similarity=0.069 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCC-C-C
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQ-P-F 163 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~L-P-f 163 (258)
+.+++.+.+.... .+.+|||++||+|.++..|++. ...|+|+|.++. ...+..+|+.+. + +
T Consensus 193 e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 193 EKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAM 270 (362)
T ss_pred HHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 3455544432211 2357999999999999988875 358999998642 123566776542 1 1
Q ss_pred C--------------CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhc
Q 025071 164 D--------------NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRE 229 (258)
Q Consensus 164 ~--------------d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~ 229 (258)
. ...||+|+..==..-. -.++++.+ .+|++++++..... .+ .+.+..+.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~-~~~~l~~l---~~~~~ivyvSC~p~---------tl--arDl~~L~~g 335 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPPRAGL-DDETLKLV---QAYERILYISCNPE---------TL--CENLETLSQT 335 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCCCCCC-cHHHHHHH---HccCCEEEEEeCHH---------HH--HHHHHHHcCC
Confidence 0 2258999984000000 12333333 34788877754311 11 2445555444
Q ss_pred CceEEeeeecCCCC----eEEEEEEe
Q 025071 230 SELVAVRKVDGFGL----DTEVVFRK 251 (258)
Q Consensus 230 ~~~~~v~~v~g~~l----~~~~~f~K 251 (258)
..+.++..+|=|.- .+.+.++|
T Consensus 336 Y~l~~v~~~DmFPqT~HvE~v~lL~r 361 (362)
T PRK05031 336 HKVERFALFDQFPYTHHMECGVLLEK 361 (362)
T ss_pred cEEEEEEEcccCCCCCcEEEEEEEEe
Confidence 45667777764333 24555554
No 211
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.001 Score=61.26 Aligned_cols=87 Identities=21% Similarity=0.199 Sum_probs=62.0
Q ss_pred CCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------CCceeeecCCCC-CCCCCCeeEEEec
Q 025071 116 ESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------PPLVIKGDFHAQ-PFDNGTFDFEFSN 174 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------~~~~~~aDa~~L-Pf~d~SFD~V~s~ 174 (258)
..+||-||-|.|..++++.+.. ..+++.||+.+. +..++.+|+.+. .-..++||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999988764 568899997531 112444554322 1112389999996
Q ss_pred ccccc-----CChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHA-----LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~-----~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-+.. ..-..+++.++|.|+|+|+++..
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 54442 12267899999999999999987
No 212
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.26 E-value=0.0015 Score=60.04 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCC
Q 025071 103 FFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNG 166 (258)
Q Consensus 103 ~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~ 166 (258)
+.+.+++...++++..||+||-|||+++..|-+.|. .|+++++.+. ...+..+|+..++++
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P-- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP-- 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--
Confidence 344455556788999999999999999999998874 8999998642 124788898877655
Q ss_pred CeeEEEec
Q 025071 167 TFDFEFSN 174 (258)
Q Consensus 167 SFD~V~s~ 174 (258)
.||.+++|
T Consensus 123 ~fd~cVsN 130 (315)
T KOG0820|consen 123 RFDGCVSN 130 (315)
T ss_pred ccceeecc
Confidence 69999986
No 213
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00023 Score=59.86 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCCCCCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
-.|.+++|+|||.|.+..+.+-.+...|+|+|+.+. ...++++|...+-+..+.||.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 367899999999999886666556668999998652 1247889999988889999998886
No 214
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.24 E-value=0.00032 Score=60.50 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=57.3
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------------CceeeecCC-CCC---CCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------------PLVIKGDFH-AQP---FDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------------~~~~~aDa~-~LP---f~d~SFD~V~s~ 174 (258)
.+.++||+-||+|.++.+....|...|+.||.++.. ..+++.|+. .++ -.+..||+|+..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 688999999999999987777888899999986421 234555532 222 247899999995
Q ss_pred ---cccccCChHHHHHHHH--hcccCCcEEEEEec
Q 025071 175 ---VFDHALYPWKFVGEIE--RTLKPAGVCVLHVA 204 (258)
Q Consensus 175 ---~l~h~~~p~~~l~Ei~--RVLKPGG~lii~v~ 204 (258)
..... -...+..+. ..|++||.+++..+
T Consensus 122 PPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 122 PPYAKGLY--YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -STTSCHH--HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCcccchH--HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 11110 244556665 79999999999764
No 215
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.22 E-value=0.001 Score=63.96 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=65.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCCC-C---CCCCCeeEEEe
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHAQ-P---FDNGTFDFEFS 173 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~L-P---f~d~SFD~V~s 173 (258)
.|.+|||+=|=||..+.+.+..|..+|++||.|.. +..++++|+.++ . =....||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 38999999999999998888888779999998742 124677775422 1 13459999999
Q ss_pred c--cccccC--------ChHHHHHHHHhcccCCcEEEEEe
Q 025071 174 N--VFDHAL--------YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~--~l~h~~--------~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
. +|-.-. +-...+.+..++|+|||.+++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5 432211 22345688999999999998865
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0045 Score=54.96 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=55.3
Q ss_pred CCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEecccccc
Q 025071 116 ESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~ 179 (258)
+.+++|||+|.|.-+.-|+- ....+++=+|.... ...++++.+++..-...-||+|+|.++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~L 147 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVASL 147 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccch
Confidence 68999999999998877662 22235888886432 134677777776533222999999755432
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ....=+...+|+||.++..
T Consensus 148 ~---~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 148 N---VLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred H---HHHHHHHHhcccCCcchhh
Confidence 2 2333356688998887653
No 217
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0049 Score=55.51 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------C---ceeeecCCCCC---CCCCCeeEEEec-cc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------P---LVIKGDFHAQP---FDNGTFDFEFSN-VF 176 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~---~~~~aDa~~LP---f~d~SFD~V~s~-~l 176 (258)
...++..+||||+-||.++.-+.+.|...|+|+|..... + .....++..+- |. +..|++++. +|
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF 154 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF 154 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh
Confidence 345788999999999999999999998899999975321 1 12333444332 22 257889885 44
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
- .-..++..+..+++|||.++..+-
T Consensus 155 I---SL~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 155 I---SLKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred h---hHHHHHHHHHHhcCCCceEEEEec
Confidence 2 245678899999999999888764
No 218
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.00 E-value=0.0013 Score=59.19 Aligned_cols=91 Identities=25% Similarity=0.311 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCC-------------------CCceeeecCCCC-CCCCC-CeeEE
Q 025071 114 FNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPR-------------------PPLVIKGDFHAQ-PFDNG-TFDFE 171 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~-------------------~~~~~~aDa~~L-Pf~d~-SFD~V 171 (258)
+++.+||=||-|.|..+.++.+.. ..+++.||+.+. +..++.+|+... --..+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 367899999999999999988764 568999998641 123566665321 11223 89999
Q ss_pred Eecccccc-----CChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSNVFDHA-----LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~~l~h~-----~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+....+.. ..-..+++.+.|.|+|||++++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 98533211 2235788999999999999999763
No 219
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.94 E-value=0.0012 Score=61.16 Aligned_cols=43 Identities=14% Similarity=-0.023 Sum_probs=32.6
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcC--CCcEEEEeCCC
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVG--VSDSIGIDLVP 148 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g--~~~v~GvD~s~ 148 (258)
++++.-...+++.+||++||.|..+.++.+.. ...|+|+|.++
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~ 54 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP 54 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH
Confidence 33333345677899999999999999888753 35799999864
No 220
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.92 E-value=0.02 Score=54.09 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=59.4
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC--------C--C-CceeeecC-CCCCCCCCCeeEEEec-cccccCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVP--------R--P-PLVIKGDF-HAQPFDNGTFDFEFSN-VFDHALY 181 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~--------~--~-~~~~~aDa-~~LPf~d~SFD~V~s~-~l~h~~~ 181 (258)
.-...+|+|.|.|+.+..+.. -+.+|-|++... + + ...+-+|. .++|=+ |+|++- +++|+.|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~----daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKG----DAIWMKWILHDWTD 251 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCc----CeEEEEeecccCCh
Confidence 347899999999999987765 344566666421 1 1 12233332 345533 588885 8999987
Q ss_pred hH--HHHHHHHhcccCCcEEEEEec
Q 025071 182 PW--KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 182 p~--~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-+ ++++.++.-|+|||.+++.-.
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 64 688999999999999988744
No 221
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0058 Score=53.18 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=61.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCC-CCCC--CCeeEEEec
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQ-PFDN--GTFDFEFSN 174 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~L-Pf~d--~SFD~V~s~ 174 (258)
-.+.++||+=+|+|.++.+....|...++.||.+.. ...++..|+... +-.. +.||+|+..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 368899999999999988777778889999997632 123555666522 1122 259999995
Q ss_pred -ccc-ccCChHHHHHH--HHhcccCCcEEEEEec
Q 025071 175 -VFD-HALYPWKFVGE--IERTLKPAGVCVLHVA 204 (258)
Q Consensus 175 -~l~-h~~~p~~~l~E--i~RVLKPGG~lii~v~ 204 (258)
=+. ...++...+.. -...|+|||.+++...
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 121 12233443333 5678999999999654
No 222
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.91 E-value=0.0046 Score=63.56 Aligned_cols=91 Identities=15% Similarity=0.018 Sum_probs=59.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc-------------C------------------------------CCcEEEEeCCCC-
Q 025071 114 FNESKALSIGARVGQEVAALKLV-------------G------------------------------VSDSIGIDLVPR- 149 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~-------------g------------------------------~~~v~GvD~s~~- 149 (258)
.++..++|.+||+|.+..+.+.. + ...++|+|+++.
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 45789999999999987544321 0 015899998642
Q ss_pred ---------------CCceeeecCCCCCCCC--CCeeEEEec--cccccCC---hHHHH---HHHHhcccCCcEEEEEec
Q 025071 150 ---------------PPLVIKGDFHAQPFDN--GTFDFEFSN--VFDHALY---PWKFV---GEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 150 ---------------~~~~~~aDa~~LPf~d--~SFD~V~s~--~l~h~~~---p~~~l---~Ei~RVLKPGG~lii~v~ 204 (258)
...+.++|+.+++.++ ++||+|++| ....+.+ ....+ .++.|...||+.+++..+
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 1246788998887653 589999998 2222221 22233 344555559999888765
No 223
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.87 E-value=0.0029 Score=62.62 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcC---------CCcEEEEeCCC
Q 025071 115 NESKALSIGARVGQEVAALKLVG---------VSDSIGIDLVP 148 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g---------~~~v~GvD~s~ 148 (258)
...+|||.|||+|.+..++.+.. ..+++|+|+++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~ 73 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK 73 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence 45689999999999987665321 13578999753
No 224
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.013 Score=53.86 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCC----------------CCceeeecCCCCCCC--CCCeeEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPR----------------PPLVIKGDFHAQPFD--NGTFDFE 171 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~--d~SFD~V 171 (258)
.+.+|.+||+-|+|+|.++.++++. + -.+++..|..+. ...+..-|....-|. +..+|+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 4679999999999999999988763 2 347888897531 112445566655554 5788988
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeee
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKV 238 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v 238 (258)
+.. ++.|+.++--++.+||-+|.-++.++.|-+ -.+.-.+.+.++|++++..+
T Consensus 182 FLD----lPaPw~AiPha~~~lk~~g~r~csFSPCIE----------Qvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 182 FLD----LPAPWEAIPHAAKILKDEGGRLCSFSPCIE----------QVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred EEc----CCChhhhhhhhHHHhhhcCceEEeccHHHH----------HHHHHHHHHHhCCCceEEEE
Confidence 874 457899998899999999865555554411 01223445566676665554
No 225
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.018 Score=50.24 Aligned_cols=106 Identities=23% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEec---c
Q 025071 115 NESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSN---V 175 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~---~ 175 (258)
....+||||||+|-.+..|++. +.....++|+++.. ..++++|... -...++.|+++-| +
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCcC
Confidence 3678999999999999998863 33457899997531 2356666432 2334889988775 2
Q ss_pred c---ccc------------CC----hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 176 F---DHA------------LY----PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 176 l---~h~------------~~----p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
. +.. .+ -++.+..+-.+|.|.|++++.... .| ..+++.+.++..|+
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~--------~N---~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR--------AN---KPKEILKILEKKGY 186 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh--------hc---CHHHHHHHHhhccc
Confidence 1 111 11 124456677788999999987531 12 25788888877664
No 226
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0094 Score=56.49 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=62.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCC---CcEEEEeCCCCC---------------CceeeecCCCCC---CCCCCeeE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGV---SDSIGIDLVPRP---------------PLVIKGDFHAQP---FDNGTFDF 170 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~---~~v~GvD~s~~~---------------~~~~~aDa~~LP---f~d~SFD~ 170 (258)
...+|.+|||+++++|.-+..+++... ..|+++|.++.+ ..+...|+..++ ...+.||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 356789999999999998888876532 246999987521 135666766554 22235999
Q ss_pred EEec-------cccccC------Ch----------HHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSN-------VFDHAL------YP----------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~-------~l~h~~------~p----------~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+.. ++..-+ .+ .+.+....++|||||.++..
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9873 232111 12 24678899999999998885
No 227
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.78 E-value=0.0049 Score=55.66 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=59.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC-------------CCCceeeecCCCCCCCC---CC
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP-------------RPPLVIKGDFHAQPFDN---GT 167 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~-------------~~~~~~~aDa~~LPf~d---~S 167 (258)
.+.+++...+.++..|||||+|+|.++..|.+.+ .+++++|+.+ ....++.+|+..+...+ +.
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~ 97 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ 97 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence 3344443345578899999999999999999887 6899999753 12357889999988776 45
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccC
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKP 195 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKP 195 (258)
-..|+++ +.+ .-....+..+.+.-+.
T Consensus 98 ~~~vv~N-lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 98 PLLVVGN-LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp EEEEEEE-ETG-TGHHHHHHHHHHHGGG
T ss_pred ceEEEEE-ecc-cchHHHHHHHhhcccc
Confidence 5666665 332 1234455566553333
No 228
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.78 E-value=0.0025 Score=60.94 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=62.8
Q ss_pred CCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCCC-CCCCeeEEEecccc
Q 025071 116 ESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQPF-DNGTFDFEFSNVFD 177 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf-~d~SFD~V~s~~l~ 177 (258)
+-+|||+-||+|..+..++.. |...|+++|+++.. ..+.++|+..+-- ..+.||+|...-+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf- 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPF- 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCC-
Confidence 358999999999998877764 66789999987521 1355566654421 2367999988532
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-.|..++..+.+.+++||.++++
T Consensus 124 --Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 --GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --CCcHHHHHHHHHhcccCCEEEEE
Confidence 24667899999999999999997
No 229
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.77 E-value=0.013 Score=52.47 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=57.2
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC----------------CceeeecCC-CCC-----CCCCCeeE
Q 025071 115 NESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP----------------PLVIKGDFH-AQP-----FDNGTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~----------------~~~~~aDa~-~LP-----f~d~SFD~ 170 (258)
.++++||||.=||..+.+.+.. . -.+|+++|+.+.. ..++++++. .|+ .+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 6789999999999876655532 1 2479999986531 123444332 111 25789999
Q ss_pred EEeccccccC-ChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHAL-YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~-~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|..+ .. +-...+.+..|.||+||++++-
T Consensus 153 aFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 99743 11 1235678999999999999884
No 230
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.74 E-value=0.0069 Score=49.58 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHh-cCCCCCCEEEEECCCCCHHHHHHHh-----cCCCcEEEEeCCC
Q 025071 99 VFSRFFQDLKQR-HFLFNESKALSIGARVGQEVAALKL-----VGVSDSIGIDLVP 148 (258)
Q Consensus 99 ~~~~~~~~L~~~-~~l~~~~~VLDIGcGtG~~~~~L~~-----~g~~~v~GvD~s~ 148 (258)
.+..+++.+.+. ....+...|+|+|||-|.++..|+. ....+|+|+|.++
T Consensus 8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 344555555443 2335677999999999999998887 3334799999864
No 231
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.72 E-value=0.069 Score=50.08 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=62.0
Q ss_pred CCCCCEEEEECCCCCHHHHH----HHhcC-CCcEEEEeCCCC--------------CCc---eeeecCCC----CCC--C
Q 025071 113 LFNESKALSIGARVGQEVAA----LKLVG-VSDSIGIDLVPR--------------PPL---VIKGDFHA----QPF--D 164 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~----L~~~g-~~~v~GvD~s~~--------------~~~---~~~aDa~~----LPf--~ 164 (258)
+.++..++|+|||+|.-+.. |.+.+ ....+++|+|.. +.. -++||..+ +|= .
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 45677999999999996543 33322 236899998741 111 24565532 321 2
Q ss_pred CCCeeEEEe-c-cccccCChH--HHHHHHHh-cccCCcEEEEEeccc
Q 025071 165 NGTFDFEFS-N-VFDHALYPW--KFVGEIER-TLKPAGVCVLHVALS 206 (258)
Q Consensus 165 d~SFD~V~s-~-~l~h~~~p~--~~l~Ei~R-VLKPGG~lii~v~~~ 206 (258)
.+...+++. + ++.++..++ .+++++++ +|+|||.+++.+..+
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 345677776 3 777766444 56799999 999999999976544
No 232
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0069 Score=57.28 Aligned_cols=89 Identities=19% Similarity=0.144 Sum_probs=70.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC----------------CceeeecCCCCCCCCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~SFD~V~s~~ 175 (258)
...+|.+|||+=||-|.++..++..|...|+++|+++.. ...+.||+...+..-+.||-|+++.
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 345699999999999999999999886569999998631 2357899998888878999999974
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.. .-..++....+.+|+||.+-...
T Consensus 265 p~---~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 265 PK---SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred CC---cchhhHHHHHHHhhcCcEEEEEe
Confidence 32 22356677888899999887764
No 233
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.67 E-value=0.027 Score=51.58 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=60.4
Q ss_pred CEEEEECCCCC--HHHHHHHh--cCCCcEEEEeCCC------------CC---CceeeecCCC-------------CCCC
Q 025071 117 SKALSIGARVG--QEVAALKL--VGVSDSIGIDLVP------------RP---PLVIKGDFHA-------------QPFD 164 (258)
Q Consensus 117 ~~VLDIGcGtG--~~~~~L~~--~g~~~v~GvD~s~------------~~---~~~~~aDa~~-------------LPf~ 164 (258)
...||||||-- .+....++ ....+|+-+|..+ .+ ..++++|..+ |.|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~- 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF- 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC-
Confidence 46999999933 34444543 2346899999753 11 2367777642 222
Q ss_pred CCCeeEEEeccccccC---ChHHHHHHHHhcccCCcEEEEEeccccCcC--------cC----CCCCCCChhHHHHHhhc
Q 025071 165 NGTFDFEFSNVFDHAL---YPWKFVGEIERTLKPAGVCVLHVALSRRAD--------KY----SANDLFSVKPLVKLFRE 229 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~---~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~--------~y----~~~~~~s~~~l~~lf~~ 229 (258)
+.-.-+++..+++|+. +|..+++.+...|.||.+++++..+..... .| ......|.+++.++|..
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~g 228 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFDG 228 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCTT
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcCC
Confidence 2334444455788875 588899999999999999999854432110 11 12234689999999986
Q ss_pred Cce
Q 025071 230 SEL 232 (258)
Q Consensus 230 ~~~ 232 (258)
.++
T Consensus 229 ~el 231 (267)
T PF04672_consen 229 LEL 231 (267)
T ss_dssp SEE
T ss_pred Ccc
Confidence 643
No 234
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.59 E-value=0.013 Score=53.55 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCCCc--------------e-eeec--CCCCC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRPPL--------------V-IKGD--FHAQP 162 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~~~--------------~-~~aD--a~~LP 162 (258)
.++.++.....--.+.+|||+|||+|..+-+..+. ...+++.+|.|+.... . ...+ .+..+
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 34444443322234678999999999876655542 3457899998653210 0 0000 11233
Q ss_pred CCCCCeeEEEec-cccccCC--hHHHHHHHHhcccCCcEEEEEecc
Q 025071 163 FDNGTFDFEFSN-VFDHALY--PWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 163 f~d~SFD~V~s~-~l~h~~~--p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
+.. .|+|+++ +|..+.+ ...+++.+.+.+.+ .++++.+.
T Consensus 100 ~~~--~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 100 FPP--DDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred CCC--CcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 333 2999984 6766655 22344555555544 66666543
No 235
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.56 E-value=0.013 Score=51.52 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=58.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------------CceeeecCCCCCCCCCCeeEEEec--ccc
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------------PLVIKGDFHAQPFDNGTFDFEFSN--VFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------------~~~~~aDa~~LPf~d~SFD~V~s~--~l~ 177 (258)
-.+.+|||+|+|+|-.+.+-+..|...|+..|+.+.. +.+...| .+ ..+..||+++.+ .++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d--~~-g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHAD--LI-GSPPAFDLLLAGDLFYN 154 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeecc--cc-CCCcceeEEEeeceecC
Confidence 3578999999999999888888887788888875421 1122222 22 378899999986 334
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
| ..-.+.+. +.+.|+-.|..++...
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvgd 179 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVGD 179 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEeC
Confidence 4 23445555 7888888887776543
No 236
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.47 E-value=0.011 Score=52.81 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=58.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC-----------Cc-e-eeecCCCCCCC----CCCeeEEE
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP-----------PL-V-IKGDFHAQPFD----NGTFDFEF 172 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~-----------~~-~-~~aDa~~LPf~----d~SFD~V~ 172 (258)
.+.+|++||-+|+.+|.....+++. | -..|+||+.++.+ .+ + +.+|+. .|.. =+.+|+|+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr-~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR-HPEKYRMLVEMVDVIF 148 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT-SGGGGTTTS--EEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC-ChHHhhcccccccEEE
Confidence 4678999999999999998888763 3 3469999998631 12 2 556665 3421 24899999
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+.+- +-.+-+.++..+..-||+||.+++.+-
T Consensus 149 ~DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 149 QDVA-QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EE-S-STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCC-ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 9632 222233456777889999999988753
No 237
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.43 E-value=0.0034 Score=58.01 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=58.8
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC-----------------CCceeeecCCC-CCC--CCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR-----------------PPLVIKGDFHA-QPF--DNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~-----------------~~~~~~aDa~~-LPf--~d~SFD~V~s~ 174 (258)
.+.+|||+=|=||.++.+.+..|..+|++||.|.. ...++++|+.+ |.- ..+.||+|++.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 57899999999999998877778778999998631 12356666542 110 24699999995
Q ss_pred --cccccC-----ChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 --VFDHAL-----YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 --~l~h~~-----~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+|-.-. +-.+.+..+.++|+|||.++...
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 432111 22345678889999999987654
No 238
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=0.072 Score=46.81 Aligned_cols=91 Identities=26% Similarity=0.243 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHh-c-CCCcEEEEeCCCCC----Cceeee-cC----------CCCCCCCCCeeEEEe
Q 025071 111 HFLFNESKALSIGARVGQEVAALKL-V-GVSDSIGIDLVPRP----PLVIKG-DF----------HAQPFDNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~-~-g~~~v~GvD~s~~~----~~~~~a-Da----------~~LPf~d~SFD~V~s 173 (258)
..+.++.+|||+||.+|.++.-..+ . +..-|.|||+-+.. ...+.+ |. +.| ++-..|+|+|
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r~VdvVlS 142 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEAL--PNRPVDVVLS 142 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhC--CCCcccEEEe
Confidence 3578899999999999999875543 2 23469999985421 123333 32 344 5678999999
Q ss_pred cc---------ccccCChH---HHHHHHHhcccCCcEEEEEe
Q 025071 174 NV---------FDHALYPW---KFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~~---------l~h~~~p~---~~l~Ei~RVLKPGG~lii~v 203 (258)
.. .+|...-+ .++.=..-.++|+|.+++-+
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 42 23322111 11112234578999988754
No 239
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.08 E-value=0.052 Score=51.34 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..+++.+++.....++ +|||+-||.|.++..|++.. ..|+|||.++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~ 228 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVE 228 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-H
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCH
Confidence 3455555543333333 89999999999999998864 5899999864
No 240
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.062 Score=52.43 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC---------------CceeeecCCCCCCC--
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRP---------------PLVIKGDFHAQPFD-- 164 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~-- 164 (258)
.+++...+.....++.++||+=||.|.++..|++.. .+|+|+|+++.. ..+..+++++..-.
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 344444443334566799999999999999999654 589999987521 24677787766544
Q ss_pred -CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 165 -NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 165 -d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
...||.|+.+=-.-.. ...+++++.+ ++|-.++++..
T Consensus 359 ~~~~~d~VvvDPPR~G~-~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 359 EGYKPDVVVVDPPRAGA-DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred ccCCCCEEEECCCCCCC-CHHHHHHHHh-cCCCcEEEEeC
Confidence 3589999984000000 1345666665 47777777754
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.94 E-value=0.16 Score=46.81 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCEEEEECCCCCHHHH-HHHh-cCC-CcEEEEeCCCC-----------------CCceeeecCCCCCCCCCCeeEEEecc
Q 025071 116 ESKALSIGARVGQEVA-ALKL-VGV-SDSIGIDLVPR-----------------PPLVIKGDFHAQPFDNGTFDFEFSNV 175 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~-~L~~-~g~-~~v~GvD~s~~-----------------~~~~~~aDa~~LPf~d~SFD~V~s~~ 175 (258)
+.+|+-||||+=-++. .|++ .+. ..|+++|+++. ...++.+|+...+.+-..||+|+.++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4599999999766543 4443 332 36889998642 12467788887777667999999864
Q ss_pred ccc--cCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDH--ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h--~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-. ..+..+++..+.+.++||..+++=
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 322 225678899999999999988885
No 242
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.81 E-value=0.03 Score=49.35 Aligned_cols=91 Identities=15% Similarity=0.039 Sum_probs=58.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCC---------------------CCceeeecCCCCCCCCCCe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPR---------------------PPLVIKGDFHAQPFDNGTF 168 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~---------------------~~~~~~aDa~~LPf~d~SF 168 (258)
.++++.+|+|+=-|.|.+++.++.. |. ..|++.-..+. ...++-.+...++ +.+..
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~ 123 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKL 123 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcc
Confidence 4689999999999999999888753 21 24665443211 0012222333455 55566
Q ss_pred eEEEeccc--------cccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 169 DFEFSNVF--------DHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 169 D~V~s~~l--------~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
|+++.+.. -|--.-.++.++++++|||||.+.+.-
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 77765311 222244677899999999999998863
No 243
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.74 E-value=0.0025 Score=49.05 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=34.1
Q ss_pred EEECCCCCHHHHHHHhc----CCCcEEEEeCCC---CC------------CceeeecCCCC--CCCCCCeeEEEeccccc
Q 025071 120 LSIGARVGQEVAALKLV----GVSDSIGIDLVP---RP------------PLVIKGDFHAQ--PFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 120 LDIGcGtG~~~~~L~~~----g~~~v~GvD~s~---~~------------~~~~~aDa~~L--Pf~d~SFD~V~s~~l~h 178 (258)
|+|||..|..+..+++. +..+++++|..+ .. ..+++++..+. -+++++||+++...-|.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999887766542 223689999865 11 12344544311 12368999999853222
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
...-...++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 223345678899999999998873
No 244
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.74 E-value=0.017 Score=50.72 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=56.8
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------------CCceeeecCCCCCCCCCCeeEEEeccccccC-
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHAL- 180 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~- 180 (258)
+.+-|+|+|+|.++...+.. ..+|++++..+. ...++.+|+....| +..|+|+|..++...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence 57899999999988665555 468999997652 12468899988888 557999996444432
Q ss_pred -C-hHHHHHHHHhcccCCcEEEE
Q 025071 181 -Y-PWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 181 -~-p~~~l~Ei~RVLKPGG~lii 201 (258)
. .-.++..+..-||-+|.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 1 12345555556778887654
No 245
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.39 E-value=0.009 Score=50.88 Aligned_cols=56 Identities=25% Similarity=0.295 Sum_probs=35.7
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCC--CCCCC-eeEEEec
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQP--FDNGT-FDFEFSN 174 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LP--f~d~S-FD~V~s~ 174 (258)
.|+|+.||.|..+..+++.. ..|+++|+++. ...++.+|+.++- +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999874 58999998642 1246777765432 22222 8999873
No 246
>PRK13699 putative methylase; Provisional
Probab=95.37 E-value=0.045 Score=48.69 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=40.2
Q ss_pred eeecCCCC--CCCCCCeeEEEec---cc--cccC-----------ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCC
Q 025071 154 IKGDFHAQ--PFDNGTFDFEFSN---VF--DHAL-----------YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSAN 215 (258)
Q Consensus 154 ~~aDa~~L--Pf~d~SFD~V~s~---~l--~h~~-----------~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~ 215 (258)
..+|+.++ .++|+|+|+|+.. .+ .+.. --..++.|++|||||||.+++.... +
T Consensus 5 ~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~---------~ 75 (227)
T PRK13699 5 ILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW---------N 75 (227)
T ss_pred EechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---------c
Confidence 44555443 4678888888774 11 1100 0135789999999999988764321 0
Q ss_pred CCCChhHHHHHhhcCceE
Q 025071 216 DLFSVKPLVKLFRESELV 233 (258)
Q Consensus 216 ~~~s~~~l~~lf~~~~~~ 233 (258)
....+...+.+.|+.
T Consensus 76 ---~~~~~~~al~~~GF~ 90 (227)
T PRK13699 76 ---RVDRFMAAWKNAGFS 90 (227)
T ss_pred ---cHHHHHHHHHHCCCE
Confidence 123455666777754
No 247
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.33 E-value=0.032 Score=44.53 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s 147 (258)
+.....|||||+|-+...|...|+ .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 456799999999999999999997 57899974
No 248
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.14 E-value=0.044 Score=50.33 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=61.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCCCC---------------CceeeecCCCC-C-CCCCCeeEEEe
Q 025071 113 LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVPRP---------------PLVIKGDFHAQ-P-FDNGTFDFEFS 173 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~~~---------------~~~~~aDa~~L-P-f~d~SFD~V~s 173 (258)
..++.+|||+++|+|.-+..+++. + ...+++.|++... ..+...|+... + .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 457889999999999988888764 2 3579999987421 12334566554 1 23346999997
Q ss_pred c-------cccccCC----------------hHHHHHHHHhcc----cCCcEEEEEe
Q 025071 174 N-------VFDHALY----------------PWKFVGEIERTL----KPAGVCVLHV 203 (258)
Q Consensus 174 ~-------~l~h~~~----------------p~~~l~Ei~RVL----KPGG~lii~v 203 (258)
. ++..-++ ..+.++...+.+ ||||+++..+
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 3 2332221 124678899999 9999988853
No 249
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.99 E-value=0.018 Score=51.71 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=39.7
Q ss_pred hcCCCCC--CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------------------CCceeeecCCC-CC
Q 025071 110 RHFLFNE--SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------------------PPLVIKGDFHA-QP 162 (258)
Q Consensus 110 ~~~l~~~--~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------------------~~~~~~aDa~~-LP 162 (258)
+..++++ .+|||.=||-|..+..++..|+ +|++++.++. ...++.+|+.+ |+
T Consensus 68 A~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~ 146 (234)
T PF04445_consen 68 AVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR 146 (234)
T ss_dssp HTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred HhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence 3345554 3899999999999998888886 7999997641 11356666554 56
Q ss_pred CCCCCeeEEEec-cccc
Q 025071 163 FDNGTFDFEFSN-VFDH 178 (258)
Q Consensus 163 f~d~SFD~V~s~-~l~h 178 (258)
.++++||+|... .|.|
T Consensus 147 ~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 147 QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CHSS--SEEEE--S---
T ss_pred hcCCCCCEEEECCCCCC
Confidence 678999999986 5544
No 250
>PRK11524 putative methyltransferase; Provisional
Probab=94.87 E-value=0.027 Score=51.49 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=35.2
Q ss_pred ceeeecCCCC--CCCCCCeeEEEec---cc-cccCC-------------hHHHHHHHHhcccCCcEEEEEe
Q 025071 152 LVIKGDFHAQ--PFDNGTFDFEFSN---VF-DHALY-------------PWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 152 ~~~~aDa~~L--Pf~d~SFD~V~s~---~l-~h~~~-------------p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.++++|+.+. .++++|||+|+++ .. ....+ -...+.|+.|+|||||.+++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3566666553 4678899999985 11 00000 1357899999999999998864
No 251
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.78 E-value=0.14 Score=48.13 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCCEEEEECCCCCHHHHHH--------Hhc----C-----CCcEEEEeCCCC-------------------CCce---ee
Q 025071 115 NESKALSIGARVGQEVAAL--------KLV----G-----VSDSIGIDLVPR-------------------PPLV---IK 155 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L--------~~~----g-----~~~v~GvD~s~~-------------------~~~~---~~ 155 (258)
..-+|.|+||..|.++..+ .+. + .-.|+--|+-.. +..+ +-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4458999999999986433 111 1 014666775210 1112 34
Q ss_pred ecCCCCCCCCCCeeEEEec-cccccC
Q 025071 156 GDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 156 aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
+.+..-=|+++|.|+++|. ++||+.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred chhhhccCCCCceEEEEEechhhhcc
Confidence 5677777999999999994 666643
No 252
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.77 E-value=0.037 Score=50.98 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=26.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s 147 (258)
..-.+++|||+|||+|-........|...+...|.+
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~n 148 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFN 148 (282)
T ss_pred eEecCceeEecCCcccccchhhhhhccceeeeEecc
Confidence 345688999999999987776655554456666654
No 253
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.75 E-value=0.075 Score=50.75 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHhc-C-CCcEEEEeCCC-------------------CCCceee
Q 025071 100 FSRFFQDLKQRHF---LFNESKALSIGARVGQEVAALKLV-G-VSDSIGIDLVP-------------------RPPLVIK 155 (258)
Q Consensus 100 ~~~~~~~L~~~~~---l~~~~~VLDIGcGtG~~~~~L~~~-g-~~~v~GvD~s~-------------------~~~~~~~ 155 (258)
|+.++..|-+... --...+|||+|.|+|.-+-++... + ...++-++.++ .+..-++
T Consensus 95 Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 95 YASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc
Confidence 4555555544221 113457999999999876555432 1 12233333322 1111233
Q ss_pred ecCCCCCCCCCCeeEEEe-ccccccCCh---HHHHHHHHhcccCCcEEEEEecc
Q 025071 156 GDFHAQPFDNGTFDFEFS-NVFDHALYP---WKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 156 aDa~~LPf~d~SFD~V~s-~~l~h~~~p---~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
.|-..+|..| ++++|+. +-+-|...+ ...++.+...+.|||.++|..+.
T Consensus 175 ~dRl~lp~ad-~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 175 EDRLSLPAAD-LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhccCCCccc-eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 3444555444 6887776 334343322 23678899999999999998653
No 254
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.66 E-value=0.25 Score=46.60 Aligned_cols=92 Identities=15% Similarity=0.040 Sum_probs=57.2
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCC---------CceeeecCCC-C-----CC-CCCCeeEEE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRP---------PLVIKGDFHA-Q-----PF-DNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~---------~~~~~aDa~~-L-----Pf-~d~SFD~V~ 172 (258)
..+.++.+||.+|||+ |..+..+++ .|...++++|.++.. ..++.....+ + .+ .+..+|+|+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 3456788999999987 777776665 565458999865321 1111111110 0 12 223699998
Q ss_pred eccc------------ccc----CChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVF------------DHA----LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l------------~h~----~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+- .|. .++...+.++.|.|+|||++++.
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 7421 111 24566789999999999999876
No 255
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.52 E-value=0.04 Score=44.21 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=26.3
Q ss_pred EEEEECCCCCHHHHHHHhcCC-CcEEEEeCCCC
Q 025071 118 KALSIGARVGQEVAALKLVGV-SDSIGIDLVPR 149 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~ 149 (258)
.+||||||.|..+..+++.+. .+++++|.++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 389999999999988887654 37999998753
No 256
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.47 E-value=0.14 Score=49.36 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=18.4
Q ss_pred ecCCCCCCCCCCeeEEEec-cccccC
Q 025071 156 GDFHAQPFDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 156 aDa~~LPf~d~SFD~V~s~-~l~h~~ 180 (258)
|.+..-=|+++|.++++|. ++||+.
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ccccccccCCCceEEEEeeccceecc
Confidence 3455555899999999995 676654
No 257
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.13 E-value=0.15 Score=46.08 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc--------CC--CcEEEEeCCCCCC----ceeeecCCCCC--------CCCCCeeEEE
Q 025071 115 NESKALSIGARVGQEVAALKLV--------GV--SDSIGIDLVPRPP----LVIKGDFHAQP--------FDNGTFDFEF 172 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~--------g~--~~v~GvD~s~~~~----~~~~aDa~~LP--------f~d~SFD~V~ 172 (258)
.-.+++|+.+.+|.++..|++. +. ..+++||+.+-.+ .-+++|+.+.. |..+.-|+|+
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVv 120 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVV 120 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEE
Confidence 3468999999999999888652 11 1299999876433 34677776543 6778899999
Q ss_pred ec---cccccCChH---------HHHHHHHhcccCCcEEEEE
Q 025071 173 SN---VFDHALYPW---------KFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~---~l~h~~~p~---------~~l~Ei~RVLKPGG~lii~ 202 (258)
|. .+..+.+-. .++.=..+||||||.++--
T Consensus 121 cDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 121 CDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred eCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 94 222222222 2445667999999988763
No 258
>PRK10742 putative methyltransferase; Provisional
Probab=93.89 E-value=0.15 Score=46.38 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=32.0
Q ss_pred HhcCCCCCC--EEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 109 QRHFLFNES--KALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 109 ~~~~l~~~~--~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
++..++++. +|||+=+|.|..+..++..|+. |+++|.++
T Consensus 80 kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p 120 (250)
T PRK10742 80 KAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNP 120 (250)
T ss_pred HHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCH
Confidence 333456666 8999999999999999999974 99999753
No 259
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.37 E-value=0.52 Score=41.92 Aligned_cols=90 Identities=23% Similarity=0.270 Sum_probs=60.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCCC-----------c--eeeecCCCCCC----CCCCeeEEEe
Q 025071 112 FLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRPP-----------L--VIKGDFHAQPF----DNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~~-----------~--~~~aDa~~LPf----~d~SFD~V~s 173 (258)
.++++++||=+|+.+|......++. |...++||+.++.+. . =+.+||. .|- -=+..|+|+.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~-~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDAR-KPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccC-CcHHhhhhcccccEEEE
Confidence 4678999999999999988888773 434699999886431 1 1345554 231 1246899988
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
.+- .-.+-+.++..+..-||+||.+++.+
T Consensus 152 DVA-Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 152 DVA-QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ecC-CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 521 11112335678889999999877764
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.21 E-value=0.11 Score=51.63 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=32.2
Q ss_pred hcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC
Q 025071 110 RHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR 149 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~ 149 (258)
...++.+..+||+.||||.+..++++ |...|+||++++.
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPD 416 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChh
Confidence 34567778999999999999988876 4678999998753
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.94 E-value=0.47 Score=44.96 Aligned_cols=83 Identities=19% Similarity=0.107 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCCCCH--HHHHHHh-cCCCcEEEEeCCCCCC---------ceeee-cCCCCCCCCCCeeEEEeccccc
Q 025071 112 FLFNESKALSIGARVGQ--EVAALKL-VGVSDSIGIDLVPRPP---------LVIKG-DFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~--~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~a-Da~~LPf~d~SFD~V~s~~l~h 178 (258)
.+.++.+|+=+|+| |- .+..+++ .| .+|+++|.++... .++.+ |....+--.+.||+|+..+
T Consensus 163 ~~~pG~~V~I~G~G-GlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv--- 237 (339)
T COG1064 163 NVKPGKWVAVVGAG-GLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV--- 237 (339)
T ss_pred CCCCCCEEEEECCc-HHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC---
Confidence 46789999999998 54 4555555 67 6999999976421 23332 1222221123499999853
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+...+....+.||+||.+++.
T Consensus 238 ---~~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 238 ---GPATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ---ChhhHHHHHHHHhcCCEEEEE
Confidence 134567889999999999886
No 262
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.92 E-value=0.62 Score=41.96 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=52.6
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCC--------C-ceeeecCCCC-----CCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRP--------P-LVIKGDFHAQ-----PFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~--------~-~~~~aDa~~L-----Pf~d~SFD~V~s~ 174 (258)
..+.++.+||..||| .|..+..+++ .|. +|++++.++.. . .+........ ...++.+|+|+.+
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~ 239 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDF 239 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEEC
Confidence 446678899998876 3666666655 564 68888765321 0 1111110000 1234678988864
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+- ....++++.|.|++||.++..
T Consensus 240 ~g-----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 240 VG-----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 21 134678999999999998875
No 263
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.67 E-value=0.25 Score=43.99 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCHHHHHHHhc-CCCcEEEEeC
Q 025071 116 ESKALSIGARVGQEVAALKLV-GVSDSIGIDL 146 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~ 146 (258)
.-.+.|||||-|.+...|+.. +..-+.|+++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehh
Confidence 346999999999999988864 3345889886
No 264
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.58 E-value=1.6 Score=38.65 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred CCCEEEEECCCCCHHHHHHHh----c-CCCcEEEEeCCC--------------CCCceeeecCCCCCC--------CCCC
Q 025071 115 NESKALSIGARVGQEVAALKL----V-GVSDSIGIDLVP--------------RPPLVIKGDFHAQPF--------DNGT 167 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~----~-g~~~v~GvD~s~--------------~~~~~~~aDa~~LPf--------~d~S 167 (258)
++..|+++|.-.|..+...++ . +..+|+|||+.- ....+++||....-. ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 467899999999998766553 3 335899999831 122467777653221 1234
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-.+|+-.+=|...+-...++-....++||+++++.
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 44666543333334456667788999999999985
No 265
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.84 E-value=0.73 Score=40.52 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=58.8
Q ss_pred EEEECCCCCHHHHHHHhcCC-CcEEEEeCCCCC----------------CceeeecCCCCCCCCCC-eeEEEeccccccC
Q 025071 119 ALSIGARVGQEVAALKLVGV-SDSIGIDLVPRP----------------PLVIKGDFHAQPFDNGT-FDFEFSNVFDHAL 180 (258)
Q Consensus 119 VLDIGcGtG~~~~~L~~~g~-~~v~GvD~s~~~----------------~~~~~aDa~~LPf~d~S-FD~V~s~~l~h~~ 180 (258)
|.||||--|.+..+|.+.|. ..++++|+++.| ..+..+|..+ +++.+. .|.|+.+.+--..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHHH
Confidence 68999999999999998874 469999997532 2356677543 333333 6877764221100
Q ss_pred ChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
-...+.+...+++....++++ |.. ....+.+++.+.|+.
T Consensus 80 -I~~ILe~~~~~~~~~~~lILq-P~~------------~~~~LR~~L~~~gf~ 118 (205)
T PF04816_consen 80 -IIEILEAGPEKLSSAKRLILQ-PNT------------HAYELRRWLYENGFE 118 (205)
T ss_dssp -HHHHHHHTGGGGTT--EEEEE-ESS-------------HHHHHHHHHHTTEE
T ss_pred -HHHHHHhhHHHhccCCeEEEe-CCC------------ChHHHHHHHHHCCCE
Confidence 134456666677665666665 321 357888999888865
No 266
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.56 E-value=0.34 Score=44.12 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=70.5
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCCCCC--CCCeeEEEec----cc---c--
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFD--NGTFDFEFSN----VF---D-- 177 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~--d~SFD~V~s~----~l---~-- 177 (258)
+++|+-||.|.....+.+.|+..+.++|+.+. +..+..+|..++.-. ...+|+++.+ .+ .
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~ 81 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGKR 81 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhhc
Confidence 68999999999999998889877889998642 233566777766543 3579999974 11 1
Q ss_pred -ccCChHH-HHHH---HHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE-Eeeeec--CCCCe
Q 025071 178 -HALYPWK-FVGE---IERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV-AVRKVD--GFGLD 244 (258)
Q Consensus 178 -h~~~p~~-~l~E---i~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~-~v~~v~--g~~l~ 244 (258)
...++.. .+.+ +.+.++|- +++...... -...++......+.+.|++.|.. ....++ .+|.+
T Consensus 82 ~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g---~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvP 151 (275)
T cd00315 82 KGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG---LLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVP 151 (275)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc---hhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCC
Confidence 1123332 3334 44444554 333222110 00111122357788888888854 333333 56666
No 267
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=91.36 E-value=0.37 Score=45.01 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCC
Q 025071 105 QDLKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVP 148 (258)
Q Consensus 105 ~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~ 148 (258)
+++++.-...+++.++|.=||.|..+.++.+. +...|+|+|..+
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~ 54 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDP 54 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCH
Confidence 33444334567889999999999999888753 335899999764
No 268
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.28 E-value=1.4 Score=42.23 Aligned_cols=91 Identities=20% Similarity=0.105 Sum_probs=56.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCC-C----cEEEEeCCCCC---------------CceeeecCCCC---------C
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGV-S----DSIGIDLVPRP---------------PLVIKGDFHAQ---------P 162 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~-~----~v~GvD~s~~~---------------~~~~~aDa~~L---------P 162 (258)
.++++.+|||+++.+|.-+..|-+... . .|++-|.+..+ ..+...|+... +
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 467899999999999998766654321 1 58888864311 11222222221 2
Q ss_pred CCCCCeeEEEec-------cccccCCh-----------------HHHHHHHHhcccCCcEEEEE
Q 025071 163 FDNGTFDFEFSN-------VFDHALYP-----------------WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 163 f~d~SFD~V~s~-------~l~h~~~p-----------------~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+-..||=|++. .+.+..+- .+.+..-.|.|||||.++-.
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344579988874 23332211 13457788999999999885
No 269
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.25 E-value=0.8 Score=45.92 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHH---hc--CCCcEEEEeCCCCC---------------CceeeecC
Q 025071 102 RFFQDLKQRHFL---FNESKALSIGARVGQEVAALK---LV--GVSDSIGIDLVPRP---------------PLVIKGDF 158 (258)
Q Consensus 102 ~~~~~L~~~~~l---~~~~~VLDIGcGtG~~~~~L~---~~--g~~~v~GvD~s~~~---------------~~~~~aDa 158 (258)
.++..|++...- +....|+-+|+|-|-++.+.- +. ...++++|+.++.. ..++..|.
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM 430 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc
Confidence 455556554221 113468889999999875432 11 12358899977642 23577899
Q ss_pred CCCCCCCCCeeEEEec---cc-cccCChHHHHHHHHhcccCCcEEEE
Q 025071 159 HAQPFDNGTFDFEFSN---VF-DHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 159 ~~LPf~d~SFD~V~s~---~l-~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
..++-+++..|+++|. +| +.-..| +.+.-+.+.|||+|+.+=
T Consensus 431 R~w~ap~eq~DI~VSELLGSFGDNELSP-ECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 431 RKWNAPREQADIIVSELLGSFGDNELSP-ECLDGAQKFLKPDGISIP 476 (649)
T ss_pred cccCCchhhccchHHHhhccccCccCCH-HHHHHHHhhcCCCceEcc
Confidence 9998557999999995 34 333344 467889999999987654
No 270
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.21 E-value=13 Score=36.87 Aligned_cols=92 Identities=18% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHh----cC-CCcEEEEeCCCC----------------CCceeeecCCCCCC-----CCCC
Q 025071 114 FNESKALSIGARVGQEVAALKL----VG-VSDSIGIDLVPR----------------PPLVIKGDFHAQPF-----DNGT 167 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~----~g-~~~v~GvD~s~~----------------~~~~~~aDa~~LPf-----~d~S 167 (258)
.+..+|.|-.||+|.......+ .. ....+|.++.+. ......+|...-|. ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 4566999999999987543322 11 124788886431 11223333333332 3467
Q ss_pred eeEEEec---c-ccccC---------------------Ch-HHHHHHHHhcccCCcEEEEEecc
Q 025071 168 FDFEFSN---V-FDHAL---------------------YP-WKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 168 FD~V~s~---~-l~h~~---------------------~p-~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
||+|+++ + -.+.. .. ..+++++.+.|+|||+..+.++.
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 9999986 2 11110 01 45789999999999988877663
No 271
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.87 E-value=0.095 Score=41.88 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=26.4
Q ss_pred CeeEEEec------cccccCC-hHHHHHHHHhcccCCcEEEEE
Q 025071 167 TFDFEFSN------VFDHALY-PWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 167 SFD~V~s~------~l~h~~~-p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.||+|+|- +++|..+ -..+++.+++.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 38999983 3444322 235789999999999999996
No 272
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=90.82 E-value=1.4 Score=42.60 Aligned_cols=92 Identities=23% Similarity=0.288 Sum_probs=62.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCC----------------------CceeeecCCCCC-CCCCCe
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRP----------------------PLVIKGDFHAQP-FDNGTF 168 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~----------------------~~~~~aDa~~LP-f~d~SF 168 (258)
++...+||-+|-|.|-.++.|.+++ ..+++-+|+.|.. ..++..|+.++= =..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3455789999999999999998876 6789999976421 124555554332 234689
Q ss_pred eEEEecccccc------CChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSNVFDHA------LYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~~l~h~------~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|+..-.+-- .....+..-..|-|+++|.++++..
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 99998411100 0123456677889999999999753
No 273
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.35 E-value=0.87 Score=46.37 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=42.2
Q ss_pred CCeeEEEeccccccCChH----HHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCC
Q 025071 166 GTFDFEFSNVFDHALYPW----KFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGF 241 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~----~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~ 241 (258)
..||+++...|.-..+|+ .++++|+|.++|||.++-.. +...+.+-+.++|+.- .+..++
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------------~a~~vr~~l~~~GF~v-~~~~~~ 228 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT---------------SAGFVRRGLQEAGFTV-RKVKGF 228 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------------hHHHHHHHHHHcCCee-eecCCC
Confidence 569999987665555564 57899999999999887432 2345566666666643 233455
Q ss_pred CCe
Q 025071 242 GLD 244 (258)
Q Consensus 242 ~l~ 244 (258)
|-+
T Consensus 229 g~k 231 (662)
T PRK01747 229 GRK 231 (662)
T ss_pred chh
Confidence 554
No 274
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=90.33 E-value=1.2 Score=41.89 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=70.3
Q ss_pred hHhhhCchhHHHHHHHHHHHHHHHHHhc----CCC---------CCCEEEEECCCCCHHHHHHHhcC-------C-----
Q 025071 84 LRAVWTTRDWERKVRVFSRFFQDLKQRH----FLF---------NESKALSIGARVGQEVAALKLVG-------V----- 138 (258)
Q Consensus 84 l~~~W~~~~w~~~~~~~~~~~~~L~~~~----~l~---------~~~~VLDIGcGtG~~~~~L~~~g-------~----- 138 (258)
+.+.|..|+--.+.-.|+.+|..+.+.. ... +..+||+||-|.|....+|+..= .
T Consensus 42 ~L~AYA~RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~ 121 (315)
T PF11312_consen 42 KLEAYAARWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPS 121 (315)
T ss_pred hhhhheeccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccc
Confidence 4445554444555566788888765421 111 12589999999999876665320 0
Q ss_pred ---------CcEEEEeCCCC-------------C---------------------CceeeecCCCCCCCC-------CCe
Q 025071 139 ---------SDSIGIDLVPR-------------P---------------------PLVIKGDFHAQPFDN-------GTF 168 (258)
Q Consensus 139 ---------~~v~GvD~s~~-------------~---------------------~~~~~aDa~~LPf~d-------~SF 168 (258)
-+++.||+.+. + ..+.+.|+-.+.-++ .+-
T Consensus 122 ~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~ 201 (315)
T PF11312_consen 122 GVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSP 201 (315)
T ss_pred cccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccCChHHHHHHhccchh
Confidence 16889997431 0 013455555444322 234
Q ss_pred eEEEec-c-----ccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSN-V-----FDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~-~-----l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|... . -.+...-.+++..+..+++||-.+.|.-+
T Consensus 202 ~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 202 DLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 555431 1 12233345788999999999998888754
No 275
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=90.27 E-value=0.75 Score=37.33 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=46.2
Q ss_pred CCeeEEEeccccccCCh----HHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeecCC
Q 025071 166 GTFDFEFSNVFDHALYP----WKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVDGF 241 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p----~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~g~ 241 (258)
..||+|+...|.-..+| ..++++++|.++|||.+.-.. +...+.+-+.++|+.- ....|+
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys---------------~a~~Vr~~L~~aGF~v-~~~~g~ 112 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS---------------SAGAVRRALQQAGFEV-EKVPGF 112 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------------BHHHHHHHHHCTEEE-EEEE-S
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------chHHHHHHHHHcCCEE-EEcCCC
Confidence 68999998766555555 468899999999999775532 2356888899999874 555688
Q ss_pred CCeEEEE
Q 025071 242 GLDTEVV 248 (258)
Q Consensus 242 ~l~~~~~ 248 (258)
|-++++.
T Consensus 113 g~Kr~~~ 119 (124)
T PF05430_consen 113 GRKREML 119 (124)
T ss_dssp TTSSEEE
T ss_pred CCcchhe
Confidence 8876544
No 276
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=89.99 E-value=1.1 Score=43.69 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=57.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhc--CCCcEEEEeCCCCC---------------CceeeecCCCCC---CCCCCeeEEEe
Q 025071 114 FNESKALSIGARVGQEVAALKLV--GVSDSIGIDLVPRP---------------PLVIKGDFHAQP---FDNGTFDFEFS 173 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~--g~~~v~GvD~s~~~---------------~~~~~aDa~~LP---f~d~SFD~V~s 173 (258)
.++.||||+.+.+|.-+.+++.. +-..|++.|.+... ..++..|..+.| |+. +||-|+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 46789999999999977666542 12358999965421 135667777666 555 9999876
Q ss_pred cc------c-------cccC----------ChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NV------F-------DHAL----------YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~------l-------~h~~----------~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+ + .... -..+.+-.....+||||+++..
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 31 1 1110 1124455667789999999885
No 277
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.41 E-value=1.6 Score=42.06 Aligned_cols=99 Identities=15% Similarity=0.049 Sum_probs=61.0
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCC--C--------------------------------------cEEEEe
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGV--S--------------------------------------DSIGID 145 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~--~--------------------------------------~v~GvD 145 (258)
.++....-.++..++|-=||+|.+....+-.+. + ..+|+|
T Consensus 182 Ail~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~D 261 (381)
T COG0116 182 AILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSD 261 (381)
T ss_pred HHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEec
Confidence 333333334557899999999998765543321 0 267999
Q ss_pred CCCCC----------------CceeeecCCCCCCCCCCeeEEEec---c--ccccCChHH----HHHHHHhcccCCcEEE
Q 025071 146 LVPRP----------------PLVIKGDFHAQPFDNGTFDFEFSN---V--FDHALYPWK----FVGEIERTLKPAGVCV 200 (258)
Q Consensus 146 ~s~~~----------------~~~~~aDa~~LPf~d~SFD~V~s~---~--l~h~~~p~~----~l~Ei~RVLKPGG~li 200 (258)
+++.. ..+.++|+..++=+-+++|+|+|| . +..-..... +.+++.|+++--+..+
T Consensus 262 id~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 262 IDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYV 341 (381)
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 87521 247888988776444799999997 2 221122222 3345566666666777
Q ss_pred EEec
Q 025071 201 LHVA 204 (258)
Q Consensus 201 i~v~ 204 (258)
++.+
T Consensus 342 ~tt~ 345 (381)
T COG0116 342 FTTS 345 (381)
T ss_pred EEcc
Confidence 7643
No 278
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.21 E-value=1.4 Score=40.69 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=48.4
Q ss_pred CCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeee---cCCCCCCCCCCeeEEEecccccc
Q 025071 114 FNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKG---DFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 114 ~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~a---Da~~LPf~d~SFD~V~s~~l~h~ 179 (258)
.++.+||=.||| .|..+..+++ .|...|+++|.++... .++.. +..++.-..+.||+|+..+ -
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~-G-- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS-G-- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-C--
Confidence 467899999876 2333444444 5765788888754211 11111 1111111123489888742 1
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ...+.+..+.|+|||++++.
T Consensus 245 -~-~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 245 -H-PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -C-HHHHHHHHHHhhcCCEEEEE
Confidence 1 23567889999999998875
No 279
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=88.68 E-value=1.6 Score=40.71 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCHHHHHHH--hcCCCcEEEEeCCC
Q 025071 116 ESKALSIGARVGQEVAALK--LVGVSDSIGIDLVP 148 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~--~~g~~~v~GvD~s~ 148 (258)
.-++||||||...+-..|. ..|+ +.+|.|+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~ 136 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDP 136 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-H
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCH
Confidence 4689999999987655453 3576 799999853
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.50 E-value=1 Score=44.88 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=54.2
Q ss_pred CCCCEEEEECCCCCHH-HHHH-HhcCCCcEEEEeCCCCC--------CceeeecCCC-----------C--C--------
Q 025071 114 FNESKALSIGARVGQE-VAAL-KLVGVSDSIGIDLVPRP--------PLVIKGDFHA-----------Q--P-------- 162 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~-~~~L-~~~g~~~v~GvD~s~~~--------~~~~~aDa~~-----------L--P-------- 162 (258)
.++.+|+=+|||.=.. +... ...|. .|+++|.++.. ..++..|..+ + .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 3688999999996544 3333 34676 79999986421 1112111110 1 0
Q ss_pred CCC--CCeeEEEeccc-cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 163 FDN--GTFDFEFSNVF-DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 163 f~d--~SFD~V~s~~l-~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|.+ ..+|+|+.++. .....|..+.+|+.+.+||||+++..
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 111 36999998643 33334544459999999999998765
No 281
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=87.15 E-value=0.87 Score=44.85 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.9
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeC
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDL 146 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~ 146 (258)
-|||||+|||.++....+.|.+.|++++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Ev 97 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEV 97 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehh
Confidence 59999999999887777778778999984
No 282
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.63 E-value=1.5 Score=41.17 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=51.8
Q ss_pred CCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc---------eeeecCCC------CCCCC-CCeeEEEecc
Q 025071 114 FNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL---------VIKGDFHA------QPFDN-GTFDFEFSNV 175 (258)
Q Consensus 114 ~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~---------~~~aDa~~------LPf~d-~SFD~V~s~~ 175 (258)
..+++|+=+|||+ |..+..+++ .|...|+.+|.++.+.. ......++ +-... .-||+|+-.+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 3445899999996 555444544 67788999998754321 11111110 00111 2589998641
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
= -..++.++.+++||||.+++.
T Consensus 247 G-----~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 247 G-----SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred C-----CHHHHHHHHHHhcCCCEEEEE
Confidence 1 133678999999999998876
No 283
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.41 E-value=4.3 Score=34.82 Aligned_cols=87 Identities=22% Similarity=0.146 Sum_probs=52.1
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCC-------CCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQP-------FDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LP-------f~d~SFD~V~s~ 174 (258)
..+.++.+||..|+|+ |..+..+++ .| .+|++++.++..... ...+..... ...+.+|+++.+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 3446788999999996 555555554 46 578888875321100 001111111 124579999874
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+- . ...+..+.+.|+++|.++...
T Consensus 209 ~~----~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 209 VG----G-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CC----C-HHHHHHHHHhcccCCEEEEEc
Confidence 21 1 145678889999999988753
No 284
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=86.37 E-value=0.63 Score=44.42 Aligned_cols=75 Identities=23% Similarity=0.142 Sum_probs=55.6
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------------------CCceeeecCCCCCCC-C
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------------------PPLVIKGDFHAQPFD-N 165 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------------------~~~~~~aDa~~LPf~-d 165 (258)
....+|..|.|-=.|||.+...-+..|. .|+|.|+.-. ...++.+|..+-|.. +
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4678899999999999998877777774 7999997421 013678888888874 5
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcc
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTL 193 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVL 193 (258)
..||+|+| ||.--++|-.|.+
T Consensus 283 ~~fDaIvc-------DPPYGVRe~~rk~ 303 (421)
T KOG2671|consen 283 LKFDAIVC-------DPPYGVREGARKT 303 (421)
T ss_pred ceeeEEEe-------CCCcchhhhhhhh
Confidence 69999999 3555556665544
No 285
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=86.28 E-value=6.3 Score=33.39 Aligned_cols=67 Identities=30% Similarity=0.317 Sum_probs=43.6
Q ss_pred CCCCCCeeEEEeccccccC-----C----------hHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHH
Q 025071 162 PFDNGTFDFEFSNVFDHAL-----Y----------PWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKL 226 (258)
Q Consensus 162 Pf~d~SFD~V~s~~l~h~~-----~----------p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~l 226 (258)
....+.||.|+-| +.|.- . -..+++-+.++|+++|.+.++.-.. ..| +.=.+.++
T Consensus 70 ~~~~~~FDrIiFN-FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~---~py------~~W~i~~l 139 (166)
T PF10354_consen 70 RLKNQRFDRIIFN-FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG---QPY------DSWNIEEL 139 (166)
T ss_pred cccCCcCCEEEEe-CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC---CCC------ccccHHHH
Confidence 4567899999885 33332 0 1246788999999999999986432 122 22335577
Q ss_pred hhcCceEEeeee
Q 025071 227 FRESELVAVRKV 238 (258)
Q Consensus 227 f~~~~~~~v~~v 238 (258)
.++.|++-+..+
T Consensus 140 A~~~gl~l~~~~ 151 (166)
T PF10354_consen 140 AAEAGLVLVRKV 151 (166)
T ss_pred HHhcCCEEEEEe
Confidence 777887655543
No 286
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.23 E-value=4 Score=37.78 Aligned_cols=86 Identities=17% Similarity=0.038 Sum_probs=50.5
Q ss_pred hcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC--------CCCCCeeE
Q 025071 110 RHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP--------FDNGTFDF 170 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP--------f~d~SFD~ 170 (258)
...+.++.+||=.|||. |..+..+++ .|...|+++|.++... .++ +..+-. .....+|+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i--~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV--NSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE--cCCCcCHHHHHHHHhCCCCCCE
Confidence 34467789999998753 334444444 5654589998654211 111 111111 12235898
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+..+= . ...+.+..+.|++||++++.
T Consensus 249 vid~~g----~-~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVG----R-PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCC----C-HHHHHHHHHHhccCCEEEEE
Confidence 886421 1 23567888999999998875
No 287
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.15 E-value=1.9 Score=39.30 Aligned_cols=81 Identities=19% Similarity=0.115 Sum_probs=47.1
Q ss_pred CCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCCce----eeecCCCCCCCCCCeeEEEeccccccCChHHHHHH
Q 025071 115 NESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPPLV----IKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGE 188 (258)
Q Consensus 115 ~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~~----~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~~l~E 188 (258)
++.+||=+||| .|..+..+++ .|...|+++|.++..... ...|..+. ..+.+|+|+-++= . ...+.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~--~~~g~Dvvid~~G----~-~~~~~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD--PRRDYRAIYDASG----D-PSLIDT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc--cCCCCCEEEECCC----C-HHHHHH
Confidence 56789999886 3444444544 576557777764322110 00111110 2346899987421 1 235678
Q ss_pred HHhcccCCcEEEEE
Q 025071 189 IERTLKPAGVCVLH 202 (258)
Q Consensus 189 i~RVLKPGG~lii~ 202 (258)
+.+.|+|||++++.
T Consensus 217 ~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 217 LVRRLAKGGEIVLA 230 (308)
T ss_pred HHHhhhcCcEEEEE
Confidence 89999999998865
No 288
>PHA01634 hypothetical protein
Probab=86.08 E-value=1 Score=37.44 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
.+.+|+|||++-|..+.++.-.|...|++++.++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 5789999999999999999888988999999864
No 289
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.91 E-value=2.1 Score=39.63 Aligned_cols=88 Identities=15% Similarity=0.004 Sum_probs=50.0
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHh--cCCCcEEEEeCCCCCCcee-eecCC-CC-CCCC-CCeeEEEeccccccCChHHH
Q 025071 113 LFNESKALSIGARV-GQEVAALKL--VGVSDSIGIDLVPRPPLVI-KGDFH-AQ-PFDN-GTFDFEFSNVFDHALYPWKF 185 (258)
Q Consensus 113 l~~~~~VLDIGcGt-G~~~~~L~~--~g~~~v~GvD~s~~~~~~~-~aDa~-~L-Pf~d-~SFD~V~s~~l~h~~~p~~~ 185 (258)
..++.+||=+|||+ |..+..+++ .|..+|+++|.++...... .++.. .. .+.+ ..+|+|+-.+ -.. .-...
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~-G~~-~~~~~ 238 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECV-GGR-GSQSA 238 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECC-CCC-ccHHH
Confidence 46788999999874 323334333 3555799999765332111 11110 00 1112 2489888632 110 01345
Q ss_pred HHHHHhcccCCcEEEEE
Q 025071 186 VGEIERTLKPAGVCVLH 202 (258)
Q Consensus 186 l~Ei~RVLKPGG~lii~ 202 (258)
+.+..+.|+|||++++.
T Consensus 239 ~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 239 INQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHHhCcCCcEEEEE
Confidence 78899999999998765
No 290
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=85.38 E-value=2.9 Score=37.98 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=52.2
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC------------------CCceee-----ecCCCCCCCCCC-eeEE
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR------------------PPLVIK-----GDFHAQPFDNGT-FDFE 171 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~------------------~~~~~~-----aDa~~LPf~d~S-FD~V 171 (258)
..+||++|+|+|-.....+.....+|+-.|.... ...+.+ +++....+--.. ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 4579999999996555444433346666664321 001111 122222222222 9999
Q ss_pred Eec-cccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 172 FSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 172 ~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
++. ++-+-..++..+.=++-.|-.+|.+++...
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 985 665555667777788888899995555443
No 291
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=85.15 E-value=4.6 Score=37.08 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhc-CC-CcEEEEeCCCCC-----------Cc--eeeecCCCCCCC----CCCeeEE
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLV-GV-SDSIGIDLVPRP-----------PL--VIKGDFHAQPFD----NGTFDFE 171 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~-g~-~~v~GvD~s~~~-----------~~--~~~aDa~~LPf~----d~SFD~V 171 (258)
..++++.+||=+|++.|......++. |. .-|++++.++.. .+ -+..|+. .|.. =...|+|
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDAr-hP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDAR-HPAKYRMLVGMVDVI 230 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCC-CchheeeeeeeEEEE
Confidence 35789999999999999987776653 32 248899987542 11 1334443 3432 2478888
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++.+- +-.....+.-...--||+||.+++.+
T Consensus 231 FaDva-qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 231 FADVA-QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eccCC-CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 88532 11111122346667899999999875
No 292
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=84.93 E-value=6.1 Score=35.84 Aligned_cols=83 Identities=24% Similarity=0.302 Sum_probs=49.1
Q ss_pred CCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeec---CCCCCCCCCCeeEEEeccccccC
Q 025071 115 NESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGD---FHAQPFDNGTFDFEFSNVFDHAL 180 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aD---a~~LPf~d~SFD~V~s~~l~h~~ 180 (258)
++.+||..|||. |..+..+++ .|...+++++.++... .++..+ ...+.-..+.+|+|+..+-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g---- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG---- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC----
Confidence 678999998875 555554544 5654688887653210 111111 1112212234899887421
Q ss_pred ChHHHHHHHHhcccCCcEEEEE
Q 025071 181 YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....++++.+.|+++|+++..
T Consensus 241 -~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 241 -APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred -CHHHHHHHHHHHhcCCEEEEE
Confidence 124568999999999998764
No 293
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.56 E-value=5.7 Score=35.83 Aligned_cols=87 Identities=14% Similarity=0.002 Sum_probs=50.1
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCC----CCCCCCeeEEEecc
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQ----PFDNGTFDFEFSNV 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~L----Pf~d~SFD~V~s~~ 175 (258)
..+.++.+||-+|+|. |..+..+++ .|...++.++.++... .++..+.... ...++.+|+++..+
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 3456788999998652 444444444 4653377776543210 1111111110 11345689998742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
- ....+.++.+.|+++|+++..
T Consensus 235 ~-----~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 235 G-----VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred C-----ChHHHHHHHHHHhcCCEEEEE
Confidence 1 134678999999999998765
No 294
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=84.09 E-value=1.1 Score=40.86 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHH-HHhcCCCcEEEEeCCCC--------------CCceeeecCCCCCCC
Q 025071 100 FSRFFQDLKQRHFLFNESKALSIGARVGQEVAA-LKLVGVSDSIGIDLVPR--------------PPLVIKGDFHAQPFD 164 (258)
Q Consensus 100 ~~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~-L~~~g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~ 164 (258)
+..+|+.+.+ .+.+..+|+|||||.--++.. +.......++|.|++.. +..+...|...-+ +
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~ 168 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-P 168 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-T
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-C
Confidence 4555555543 455688999999998766543 22222347999998642 1234555665543 3
Q ss_pred CCCeeEEEec
Q 025071 165 NGTFDFEFSN 174 (258)
Q Consensus 165 d~SFD~V~s~ 174 (258)
....|+.+.-
T Consensus 169 ~~~~DlaLll 178 (251)
T PF07091_consen 169 KEPADLALLL 178 (251)
T ss_dssp TSEESEEEEE
T ss_pred CCCcchhhHH
Confidence 4578998873
No 295
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=82.35 E-value=2.4 Score=35.87 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..++++++... -.++..|||-=||+|..+.+..+.| .+.+|+|+++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~ 223 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcC-CeEEEEeCCH
Confidence 45677776543 3578899999999999988877777 4799999864
No 296
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.99 E-value=5.3 Score=36.45 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhc------CCCcEEEEeCC
Q 025071 102 RFFQDLKQRHFLFNESKALSIGARVGQEVAALKLV------GVSDSIGIDLV 147 (258)
Q Consensus 102 ~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~------g~~~v~GvD~s 147 (258)
.++..+.+.+.+.+...++|.|||.|.++.+++.. ....++-||..
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 45555666677778889999999999999988753 22367889964
No 297
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=80.90 E-value=4.2 Score=36.89 Aligned_cols=86 Identities=17% Similarity=0.058 Sum_probs=49.1
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCeeEEEec
Q 025071 112 FLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SFD~V~s~ 174 (258)
.+.++.+||..|+| .|..+..+++ .|...+++++.+..... -...+..+..+ +++.+|+++..
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence 45678899997765 2555555544 46446778765421110 00111111111 23579999874
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+- ....+.+..+.|+++|+++..
T Consensus 244 ~g-----~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 244 VG-----FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 21 124678999999999998754
No 298
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.57 E-value=5.8 Score=36.97 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=49.7
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCC-----CCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQ-----PFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~L-----Pf~d~SFD~V~s~ 174 (258)
..+.++.+||=.|+|. |..+..+++ .|...|+++|.++... .++..+.+++ ...++.+|+|+..
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~ 266 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEM 266 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEEC
Confidence 4466788999998762 333444444 5765689998754221 1111110100 0112358988864
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+ - . ...+.+..+.|++||+++..
T Consensus 267 ~-G---~-~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 267 A-G---S-VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred C-C---C-hHHHHHHHHHHhcCCEEEEE
Confidence 2 1 1 23567889999999998765
No 299
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.30 E-value=3 Score=38.57 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=48.1
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCC---CCC--------CceeeecCCCCCC----CCCCeeEEEecc
Q 025071 113 LFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLV---PRP--------PLVIKGDFHAQPF----DNGTFDFEFSNV 175 (258)
Q Consensus 113 l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s---~~~--------~~~~~aDa~~LPf----~d~SFD~V~s~~ 175 (258)
..++.+||-+|||. |..+..+++ .|. +|++++.+ +.. ...+ +..+-++ ..+.+|+|+..+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc
Confidence 34678999999863 444444544 565 79998863 211 0111 1111010 124589888742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
= . ...+.+..++|++||.+++.
T Consensus 247 g----~-~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 247 G----V-PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred C----C-HHHHHHHHHHccCCcEEEEE
Confidence 1 1 23568899999999988764
No 300
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=79.30 E-value=7 Score=36.34 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC--------CCceeeecCCCCCCCCCCeeEEEeccccccCChHH
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR--------PPLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWK 184 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~--------~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~ 184 (258)
+.++....|+|+-+|..+-.|.+.+. .|++||--+- ....+.+|....--.....|..+|..++ .|.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE---kP~r 284 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE---KPAR 284 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc---CcHH
Confidence 56889999999999999999988775 7999995331 1223556655443256789999886443 5777
Q ss_pred HHHHHHhcccCC
Q 025071 185 FVGEIERTLKPA 196 (258)
Q Consensus 185 ~l~Ei~RVLKPG 196 (258)
+..-|...|..|
T Consensus 285 v~~li~~Wl~nG 296 (358)
T COG2933 285 VAALIAKWLVNG 296 (358)
T ss_pred HHHHHHHHHHcc
Confidence 777777777653
No 301
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.15 E-value=1.2 Score=38.04 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC----------------CCceeeecCCCCCCCCCCeeEEEe
Q 025071 114 FNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPR----------------PPLVIKGDFHAQPFDNGTFDFEFS 173 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~----------------~~~~~~aDa~~LPf~d~SFD~V~s 173 (258)
.+.++.+|+|.|.|+...+.++.|....+|+++++. ...+.+-|.-+....|-.+-+|+-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee
Confidence 345789999999999998888888667899998642 112444566666666655555554
No 302
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.03 E-value=1.5 Score=37.19 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.7
Q ss_pred HHHHHHHHhcccCCcEEEEEec
Q 025071 183 WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
...+.|+.|||||||.+++.+.
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHhhcCCCeeEEEEec
Confidence 4678999999999999999765
No 303
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.90 E-value=19 Score=32.84 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=49.8
Q ss_pred hcCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCC---------CCCCCCee
Q 025071 110 RHFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQ---------PFDNGTFD 169 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~L---------Pf~d~SFD 169 (258)
...+.++.+||-.|+|. |..+..+++ .|...|+.++.++... .++..+.... ...+..+|
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence 34567788888887754 444445554 5653377776532110 1111111110 12334589
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+..+- ....+.+..+.|+++|+++..
T Consensus 237 ~vld~~g-----~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 237 VVIECTG-----AESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred EEEECCC-----CHHHHHHHHHHhhcCCEEEEE
Confidence 9987421 123568999999999998764
No 304
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.41 E-value=16 Score=33.58 Aligned_cols=84 Identities=23% Similarity=0.108 Sum_probs=47.1
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCCC-----------CCCCee
Q 025071 112 FLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQPF-----------DNGTFD 169 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf-----------~d~SFD 169 (258)
...++.+||=.|+| .|..+..+++ .|..+|++++.++... .++ +.....+ ..+.+|
T Consensus 174 ~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi--~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 174 PVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATI--DIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEE--cCcccccHHHHHHHHHHhCCCCCc
Confidence 34477888888864 1222233333 5654788887543210 111 1111111 124689
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+..+- ....+.+..+.|+++|+++..
T Consensus 252 ~vid~~g-----~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 252 VVIEASG-----HPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEEECCC-----ChHHHHHHHHHhccCCEEEEE
Confidence 8886421 123567889999999998865
No 305
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.88 E-value=3.3 Score=39.86 Aligned_cols=41 Identities=22% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCCCeeEEEe-ccccccCCh--HHHHHHHHhcccCCcEEEEEec
Q 025071 164 DNGTFDFEFS-NVFDHALYP--WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 164 ~d~SFD~V~s-~~l~h~~~p--~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+++++|.++. .+++++.+. .+.+++|.|+++|||++++-..
T Consensus 292 ~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 292 PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 5899997765 588887643 3457999999999999998643
No 306
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=75.85 E-value=6.3 Score=39.43 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=52.9
Q ss_pred CCCEEEEECCCCC-HHHHHH-HhcCCCcEEEEeCCCCC--------CceeeecCCC-----------C--C--------C
Q 025071 115 NESKALSIGARVG-QEVAAL-KLVGVSDSIGIDLVPRP--------PLVIKGDFHA-----------Q--P--------F 163 (258)
Q Consensus 115 ~~~~VLDIGcGtG-~~~~~L-~~~g~~~v~GvD~s~~~--------~~~~~aDa~~-----------L--P--------f 163 (258)
++.+|+=+|||.= ..+..+ ...|. .|+.+|.++.. ..++.-|..+ + + +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 4689999999964 333333 34675 69899975321 1121111100 0 1 1
Q ss_pred C--CCCeeEEEecc-ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 164 D--NGTFDFEFSNV-FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 164 ~--d~SFD~V~s~~-l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+ -..+|+|+..+ +.....|.-.-+|+.+.+|||+.++=.
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1 24699999864 444456655679999999999987643
No 307
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.39 E-value=12 Score=34.79 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=51.6
Q ss_pred HhcCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCC----------ceeeecCC-CCC-----CCCCCee
Q 025071 109 QRHFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPP----------LVIKGDFH-AQP-----FDNGTFD 169 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~----------~~~~aDa~-~LP-----f~d~SFD 169 (258)
....+.++.+||=.|+ |.|..+..+++ .|. +|++++.++... .++..+.+ .+. ...+.+|
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD 230 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGID 230 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcE
Confidence 3345678899999998 35666666655 565 688887643111 11111000 000 1123588
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+..+ . ...+.+..+.|++||++++.
T Consensus 231 ~v~d~v-G-----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 231 IYFDNV-G-----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEECC-C-----HHHHHHHHHHhccCCEEEEE
Confidence 888642 1 23568899999999998765
No 308
>PRK13699 putative methylase; Provisional
Probab=73.91 E-value=8.1 Score=34.28 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..+++.++... -.+|+.|||-=||+|..+.+..+.| .+.+|+|+++
T Consensus 150 ~~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~ 195 (227)
T PRK13699 150 VTSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLE 195 (227)
T ss_pred HHHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCH
Confidence 34566665432 3478899999999999988877777 4799999874
No 309
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=73.56 E-value=5.9 Score=35.53 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=43.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCCCCC----------------ceeeecCCCCCCC-CCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVPRPP----------------LVIKGDFHAQPFD-NGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~~~~----------------~~~~aDa~~LPf~-d~SFD~V~s~ 174 (258)
++.+.++.||||--|.+..+|-+.+ ...+++.|+++.|. .+..+|.. .++. ++.+|+|+.+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~d~~d~ivIA 92 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELEDEIDVIVIA 92 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCccCCcCEEEEe
Confidence 3456679999999999999988765 46789999876531 24556662 3454 3489988764
No 310
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=72.97 E-value=5.1 Score=41.06 Aligned_cols=39 Identities=31% Similarity=0.362 Sum_probs=29.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHh-cCC-CcEEEEeCCCC
Q 025071 111 HFLFNESKALSIGARVGQEVAALKL-VGV-SDSIGIDLVPR 149 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~-~g~-~~v~GvD~s~~ 149 (258)
..+.++..|||+||.+|.+..-..+ .+. .-|+|||+.+.
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 3567888999999999998865554 343 35899998764
No 311
>PRK11524 putative methyltransferase; Provisional
Probab=72.87 E-value=8.8 Score=34.96 Aligned_cols=46 Identities=17% Similarity=0.060 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..+.++++... -.+|+.|||-=||+|..+.+..+.| .+.+|+|+++
T Consensus 195 ~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~ 240 (284)
T PRK11524 195 EALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINS 240 (284)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCH
Confidence 45666666543 2578999999999999988777776 5799999875
No 312
>PLN02740 Alcohol dehydrogenase-like
Probab=72.34 E-value=22 Score=33.32 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=48.5
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCCC-------CCCCeeEEE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQPF-------DNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf-------~d~SFD~V~ 172 (258)
..+.++.+||=+|||. |..+..+++ .|...|+++|.++... .++.....+-++ ..+.+|+|+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEE
Confidence 4567889999998752 223333443 5754699998754221 111111000001 122589988
Q ss_pred eccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
..+= . ...+.+..+.+++| |++++.
T Consensus 274 d~~G----~-~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 274 ECAG----N-VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred ECCC----C-hHHHHHHHHhhhcCCCEEEEE
Confidence 7421 1 24567888899997 987664
No 313
>KOG2730 consensus Methylase [General function prediction only]
Probab=71.97 E-value=3.1 Score=37.64 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
....|+|.-||.|......+..|. .|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDP 126 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDP 126 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccH
Confidence 556899999999999888877764 799999875
No 314
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=71.84 E-value=15 Score=34.05 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=49.5
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCC-----CCCCCCeeEEEec
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQ-----PFDNGTFDFEFSN 174 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~L-----Pf~d~SFD~V~s~ 174 (258)
..+.++.+||-.|+|. |..+..+++ .|...++++|.++... .++..+...+ ......+|+|+..
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 3456788899888753 334444444 5765688888653211 1111110000 0013468988874
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-. ...+.++.+.|+++|.++..
T Consensus 262 ~g~-----~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 262 TGV-----PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCC-----cHHHHHHHHHhccCCEEEEe
Confidence 211 23568999999999998765
No 315
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.62 E-value=8 Score=33.50 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=28.0
Q ss_pred CCCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 164 DNGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 164 ~d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+.++||+|+++ .+.--...+..++-|.+.|+|-|..++..
T Consensus 100 eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 45699999995 32211223556789999999999966644
No 316
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=71.44 E-value=10 Score=34.38 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=48.2
Q ss_pred CCCCC--CEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCC----------ceeeecCCCCC-----CCCCCeeEE
Q 025071 112 FLFNE--SKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPP----------LVIKGDFHAQP-----FDNGTFDFE 171 (258)
Q Consensus 112 ~l~~~--~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~----------~~~~aDa~~LP-----f~d~SFD~V 171 (258)
.+.++ .+||=.|+ |.|..+..+++ .|..+|++++.++... .++..+...+. ..++.+|+|
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEE
Confidence 34444 78999986 35556555554 5654688887653211 11111101100 112468999
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+..+ . . ..+.+..+.|++||+++..
T Consensus 229 id~~-g---~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 229 FDNV-G---G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred EECC-C---c--HHHHHHHHHhccCCEEEEE
Confidence 8642 1 1 2347889999999998864
No 317
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.23 E-value=20 Score=32.85 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=49.6
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCC-------C-CCCCeeEEEe
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQP-------F-DNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LP-------f-~d~SFD~V~s 173 (258)
..+.++.+||-.|+| .|..+..+++ .|...++++|.++.... -..-+..... + ....+|+|+.
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 346678899999875 2333444444 57656888886532110 0001111111 1 2246898886
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+- ....+.++.+.|+++|+++..
T Consensus 242 ~~g-----~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 242 AGG-----GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCC-----CHHHHHHHHHHhhcCCEEEEe
Confidence 321 124568999999999988764
No 318
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=70.80 E-value=14 Score=32.94 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCC-----C-CCCCeeEEEeccccc
Q 025071 114 FNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQP-----F-DNGTFDFEFSNVFDH 178 (258)
Q Consensus 114 ~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LP-----f-~d~SFD~V~s~~l~h 178 (258)
.++.+||=+|+|+ |..+..+++ .|...|+++|.++..... ...+..... . ....+|+|+..+=
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G-- 196 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG-- 196 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC--
Confidence 4778999998752 223333443 576558888865321100 000111100 0 1235888886311
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+++..+.|+|||++++.
T Consensus 197 ---~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 197 ---ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred ---ChHHHHHHHHHhcCCCEEEEe
Confidence 123567889999999998875
No 319
>PLN02827 Alcohol dehydrogenase-like
Probab=70.63 E-value=14 Score=34.78 Aligned_cols=85 Identities=24% Similarity=0.284 Sum_probs=47.5
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHH-hcCCCcEEEEeCCCCCC---------ceeeecCCCC--C-------CCCCCeeE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALK-LVGVSDSIGIDLVPRPP---------LVIKGDFHAQ--P-------FDNGTFDF 170 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~-~~g~~~v~GvD~s~~~~---------~~~~aDa~~L--P-------f~d~SFD~ 170 (258)
..+.++.+||-.|+|+ |..+..++ ..|...|+++|.++... .++ +..+. + ...+.+|+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i--~~~~~~~~~~~~v~~~~~~g~d~ 266 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFI--NPNDLSEPIQQVIKRMTGGGADY 266 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE--cccccchHHHHHHHHHhCCCCCE
Confidence 3466789999998753 22333344 35765688888543211 111 11100 0 01125898
Q ss_pred EEeccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
|+..+ - . ...+.+..+.|++| |++++.
T Consensus 267 vid~~-G---~-~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 267 SFECV-G---D-TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred EEECC-C---C-hHHHHHHHHhhccCCCEEEEE
Confidence 88642 1 1 23457888999999 998764
No 320
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=70.25 E-value=15 Score=35.84 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=48.9
Q ss_pred CCCCCCEEEEECCCC-CHHHH-HHHhcCCCcEEEEeCCCCCCceeeec-CCCCCCC--CCCeeEEEeccccccCChHHHH
Q 025071 112 FLFNESKALSIGARV-GQEVA-ALKLVGVSDSIGIDLVPRPPLVIKGD-FHAQPFD--NGTFDFEFSNVFDHALYPWKFV 186 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~-~L~~~g~~~v~GvD~s~~~~~~~~aD-a~~LPf~--d~SFD~V~s~~l~h~~~p~~~l 186 (258)
...++.+|+=+|||. |.... .++..|. +|+.+|.++........+ +...+.+ -..+|+|+..+ -.+..+-
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at----G~~~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT----GNKDIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC----CCHHHHH
Confidence 345789999999996 33333 3345676 799999875432110000 0000111 13579998742 1233333
Q ss_pred HHHHhcccCCcEEEEE
Q 025071 187 GEIERTLKPAGVCVLH 202 (258)
Q Consensus 187 ~Ei~RVLKPGG~lii~ 202 (258)
.+..+.+|+||+++..
T Consensus 273 ~~~l~~mk~Ggilvnv 288 (413)
T cd00401 273 GEHFEQMKDGAIVCNI 288 (413)
T ss_pred HHHHhcCCCCcEEEEe
Confidence 4668899999988765
No 321
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=70.10 E-value=9.4 Score=35.92 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcC-CCcEEEEeCCC-------------------CCCceeeecCCCC--CCCCCCee
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVG-VSDSIGIDLVP-------------------RPPLVIKGDFHAQ--PFDNGTFD 169 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g-~~~v~GvD~s~-------------------~~~~~~~aDa~~L--Pf~d~SFD 169 (258)
...++.++|-||-|-|...+...... +.++.-+|+.. ....+..||...+ -.+.+.||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 45678899999999999876654431 23444444321 1123455664322 12468999
Q ss_pred EEEecccccc-----CChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHA-----LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~-----~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+...=+-+ .....+..-+.+.|||||+.+.+
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 9998421111 12234668899999999998886
No 322
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=69.69 E-value=9.8 Score=34.53 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=48.8
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCC---------CceeeecCCC----CCC-CCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRP---------PLVIKGDFHA----QPF-DNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~---------~~~~~aDa~~----LPf-~d~SFD~V~s~~ 175 (258)
.+.++.+||-.|+|+ |..+..+++ .|...+++++.+... ..++..+... ... ....||+++.+.
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~ 235 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA 235 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC
Confidence 356788999998754 445444544 565348887754211 0111111000 011 123489888742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.....+.++.+.|+++|+++..
T Consensus 236 -----g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 236 -----GSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred -----CCHHHHHHHHHHhhcCCEEEEE
Confidence 1234568999999999998765
No 323
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.30 E-value=61 Score=29.04 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=49.9
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC-CCCCCeeEEEecccccc
Q 025071 112 FLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP-FDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP-f~d~SFD~V~s~~l~h~ 179 (258)
.+.++.+||-.||| .|..+..+++ .|. +|++++.+.... .++........ -..+.+|+++....
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~--- 234 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV--- 234 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC---
Confidence 45678899999987 5555555554 465 688887653211 11111100000 01245898886421
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+.++.+.|+++|.++..
T Consensus 235 --~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 235 --SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred --cHHHHHHHHHhcccCCEEEEE
Confidence 123568899999999988775
No 324
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=68.70 E-value=32 Score=31.89 Aligned_cols=87 Identities=22% Similarity=0.215 Sum_probs=48.1
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC-------CCCCCeeEEE
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP-------FDNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP-------f~d~SFD~V~ 172 (258)
..+.++.+||=.|+| .|..+..+++ .|..+|+++|.++... .++.......+ .....+|+|+
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEE
Confidence 456778899999875 2223333443 5765788988653211 11111000000 1123589888
Q ss_pred eccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
..+= ....+.+..+.|+|| |++++.
T Consensus 260 d~~g-----~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 260 ECTG-----NADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred ECCC-----ChHHHHHHHHhcccCCCEEEEE
Confidence 6421 124567889999986 988775
No 325
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=68.67 E-value=30 Score=32.19 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=46.1
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC----------ceeee-cCCCCCCCCCCeeEEEeccccc
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP----------LVIKG-DFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~----------~~~~a-Da~~LPf~d~SFD~V~s~~l~h 178 (258)
...++.+||-.|||. |..+..+++ .|. ++++++.+.... .++.. +...+.-..+.+|+|+..+-
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g-- 256 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS-- 256 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC--
Confidence 345788898888862 333344444 564 688777653211 01100 00000000124788886321
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ...+.+..+.|++||+++..
T Consensus 257 --~-~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 257 --A-VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred --C-HHHHHHHHHHhcCCcEEEEe
Confidence 1 23567899999999998765
No 326
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=68.29 E-value=20 Score=32.58 Aligned_cols=85 Identities=16% Similarity=0.066 Sum_probs=49.7
Q ss_pred cCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCC----------ceeeecCC-CC-----CCCCCCeeEE
Q 025071 111 HFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPP----------LVIKGDFH-AQ-----PFDNGTFDFE 171 (258)
Q Consensus 111 ~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~----------~~~~aDa~-~L-----Pf~d~SFD~V 171 (258)
..+.++.+||=.|+ |.|..+..+++ .|. +|++++.++... .++..+.+ .+ -...+.+|+|
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v 225 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIY 225 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEE
Confidence 45678899999987 34555555554 565 688877543110 11110000 00 0112468888
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+..+ . ...+.+..+.|++||+++..
T Consensus 226 ~d~~-g-----~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 226 FDNV-G-----GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EECC-C-----HHHHHHHHHHhccCcEEEEe
Confidence 8642 1 24568899999999998864
No 327
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=68.28 E-value=21 Score=31.17 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=49.3
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce--eeecCC-CCC-----CCCCCeeEEEeccccccC
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV--IKGDFH-AQP-----FDNGTFDFEFSNVFDHAL 180 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~--~~aDa~-~LP-----f~d~SFD~V~s~~l~h~~ 180 (258)
..+.++.+||-.|||. |..+..+++ .|...|++++.++..... ..+.+. -+. .....+|+|+..+-
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASG---- 168 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccC----
Confidence 3456788899998764 444444444 565338888864321100 000000 000 12346898886421
Q ss_pred ChHHHHHHHHhcccCCcEEEEE
Q 025071 181 YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+.+..+.|+++|.++..
T Consensus 169 -~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 169 -SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred -ChHHHHHHHHHhcCCcEEEEE
Confidence 123568899999999998765
No 328
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=68.16 E-value=24 Score=32.59 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=49.4
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHH-hcCCCcEEEEeCCCCCCc-------eeeecCCCCC--------CCCCCeeEEEe
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALK-LVGVSDSIGIDLVPRPPL-------VIKGDFHAQP--------FDNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~-~~g~~~v~GvD~s~~~~~-------~~~aDa~~LP--------f~d~SFD~V~s 173 (258)
..+.++.+||-.|+| .|..+..++ ..|...|++++.+..... -..-+....+ .+.+.+|+++.
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEE
Confidence 345678899998875 344444444 357545888775432100 0001111111 12456898886
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+- ....+.++.|.|+++|+++..
T Consensus 258 ~~~-----~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 258 AVG-----RAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred cCC-----ChHHHHHHHHHhhcCCeEEEE
Confidence 421 134568999999999998765
No 329
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=68.10 E-value=37 Score=30.36 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=49.9
Q ss_pred hcCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCC---------CceeeecCCCC-----CCCCCCeeEEE
Q 025071 110 RHFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRP---------PLVIKGDFHAQ-----PFDNGTFDFEF 172 (258)
Q Consensus 110 ~~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~---------~~~~~aDa~~L-----Pf~d~SFD~V~ 172 (258)
...+.++.+||=.|+ |.|..+..+++ .|. +|++++.++.. ..++......+ ....+.+|+|+
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vl 216 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYF 216 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEE
Confidence 344677889998884 34555555554 565 68888754321 01111110110 01124689888
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+ . ...+.+..+.|+++|+++..
T Consensus 217 d~~-g-----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 217 DNV-G-----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred ECC-C-----HHHHHHHHHhhccCCEEEEE
Confidence 632 1 24568999999999998764
No 330
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=67.89 E-value=32 Score=31.11 Aligned_cols=84 Identities=18% Similarity=0.087 Sum_probs=50.0
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC--------CCCCCeeEE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP--------FDNGTFDFE 171 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP--------f~d~SFD~V 171 (258)
..+.++.+||..|+|. |..+..+++ .|. +|+++..++... .++ +..+.+ .+++.+|++
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~--~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTI--NVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEe--cCcccCHHHHHHHHhCCCCCCEE
Confidence 3466788999998763 555555554 464 677775432110 111 111111 133468999
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+...- ....+.++.+.|+++|.++..
T Consensus 232 ld~~g-----~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 232 IDATG-----NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 87421 134568999999999998764
No 331
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=67.87 E-value=27 Score=31.69 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=47.5
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHH-hcCCCcEEEEeCCCCCC---------ceeeecCCC---C-CC-CCCCeeEEEecc
Q 025071 112 FLFNESKALSIGARV-GQEVAALK-LVGVSDSIGIDLVPRPP---------LVIKGDFHA---Q-PF-DNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~-~~g~~~v~GvD~s~~~~---------~~~~aDa~~---L-Pf-~d~SFD~V~s~~ 175 (258)
.+.++.+||=.|+|. |..+..++ ..|..+|+++|.++... .++....+. + .. ....+|+|+..+
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 356788999998752 22233333 35764488888653211 111111000 0 01 123689998642
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
- ....+.+..+.|++||++++.
T Consensus 240 g-----~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 240 G-----NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred C-----CHHHHHHHHHHhhcCCEEEEE
Confidence 1 123456788999999998765
No 332
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=67.19 E-value=31 Score=31.86 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCC------CCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQ------PFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~L------Pf~d~SFD~V~s~ 174 (258)
.+.++.+||=.|+| .|..+..+++ .|...+++++.++... .++..+...+ --.+..+|+|+..
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~ 263 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEA 263 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEe
Confidence 34567788877654 2333333343 5654488887543210 1111111110 0124568999874
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. . .+ ..+.++.+.|+++|.++..
T Consensus 264 v-g---~~-~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 264 L-G---KP-ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred C-C---CH-HHHHHHHHHHhcCCEEEEE
Confidence 2 1 11 2568899999999998765
No 333
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=67.10 E-value=15 Score=35.71 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=25.3
Q ss_pred CCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCC
Q 025071 116 ESKALSIGARVGQEVAALKL-VGVSDSIGIDLV 147 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s 147 (258)
-..|+|+|.|.|..+..|+- +|. .|.|||-+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegs 185 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGS 185 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCc-eEEEeccc
Confidence 35799999999999998863 454 79999964
No 334
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=66.85 E-value=43 Score=31.83 Aligned_cols=109 Identities=11% Similarity=-0.002 Sum_probs=53.7
Q ss_pred CCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeEEEecc-ccccCChHHHHHHHHh
Q 025071 115 NESKALSIGARV-GQ-EVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNV-FDHALYPWKFVGEIER 191 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~V~s~~-l~h~~~p~~~l~Ei~R 191 (258)
.+.+||=||.|. |. .+.+|.+.|..+++-+..+.....+-....+.+.|. +.+|+|++++ -...+.|......+.+
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~-~~~DvVIs~t~~Tas~~p~i~~~~~~~ 251 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQ-DPYDVIFFGSSESAYAFPHLSWESLAD 251 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcc-cCCCEEEEcCCcCCCCCceeeHHHHhh
Confidence 567999999983 32 345677778766766665432100000001223444 4689999731 0111122222233333
Q ss_pred cccCCcEEEEEeccccCcCc---CCCCCCCChhHHHHHh
Q 025071 192 TLKPAGVCVLHVALSRRADK---YSANDLFSVKPLVKLF 227 (258)
Q Consensus 192 VLKPGG~lii~v~~~~~~~~---y~~~~~~s~~~l~~lf 227 (258)
..+ ++++=.+.+|..+. .....+|+++++.+..
T Consensus 252 ~~~---r~~iDLAvPRdId~v~~~~~v~Ly~iDdL~~i~ 287 (338)
T PRK00676 252 IPD---RIVFDFNVPRTFPWSETPFPHRYLDMDFISEWV 287 (338)
T ss_pred ccC---cEEEEecCCCCCccccccCCcEEEEhHHHHHHH
Confidence 222 46665666665442 1122346666665543
No 335
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=66.74 E-value=36 Score=31.16 Aligned_cols=84 Identities=13% Similarity=-0.030 Sum_probs=48.4
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCCCCCCCeeEEEeccccccCC
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQPFDNGTFDFEFSNVFDHALY 181 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LPf~d~SFD~V~s~~l~h~~~ 181 (258)
..+.++.+||=.|+|. |..+..+++ .|. +|++++.++..... ...+... ...+.+|+++...- .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~--~~~~~~d~~i~~~~----~ 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAYD--TPPEPLDAAILFAP----A 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceeccccc--cCcccceEEEECCC----c
Confidence 3466788999999753 223334444 565 68888875432100 0111111 11245887664211 1
Q ss_pred hHHHHHHHHhcccCCcEEEEE
Q 025071 182 PWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+ ..+.+..+.|++||++++.
T Consensus 234 ~-~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 234 G-GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred H-HHHHHHHHhhCCCcEEEEE
Confidence 2 3578899999999998775
No 336
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=66.35 E-value=45 Score=30.10 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=50.9
Q ss_pred HhcCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCC-CC-----CCCCCCeeE
Q 025071 109 QRHFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFH-AQ-----PFDNGTFDF 170 (258)
Q Consensus 109 ~~~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~-~L-----Pf~d~SFD~ 170 (258)
....+.++.+||=.|. |.|..+..+++ .|. +|++++.++... .++..+.. .+ ....+.+|+
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEE
Confidence 3445678899999985 35666655655 465 688887543210 11111110 00 011246898
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+..+ . ...+.+..++|+|||+++..
T Consensus 211 v~d~~-G-----~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 211 YFDNV-G-----GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEECC-C-----HHHHHHHHHHhCcCcEEEEe
Confidence 88642 1 22457899999999999865
No 337
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.27 E-value=23 Score=32.22 Aligned_cols=84 Identities=20% Similarity=0.122 Sum_probs=46.0
Q ss_pred CCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC-----CCCCCeeEEEecccc
Q 025071 114 FNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP-----FDNGTFDFEFSNVFD 177 (258)
Q Consensus 114 ~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP-----f~d~SFD~V~s~~l~ 177 (258)
.++.+||-.|+|. |..+..+++ .|...+++++.++... .++..+..+.+ ...+.+|+|+.++-
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g- 240 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG- 240 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCC-
Confidence 5677888877653 334444443 5654577775432110 01111111110 12346898887421
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
......++.+.|+++|.++..
T Consensus 241 ----~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 241 ----NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred ----CHHHHHHHHHHhccCCEEEEE
Confidence 133568899999999998764
No 338
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=65.87 E-value=22 Score=32.35 Aligned_cols=85 Identities=16% Similarity=0.033 Sum_probs=47.0
Q ss_pred CCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCC--------CCCCCeeEEEecc
Q 025071 113 LFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQP--------FDNGTFDFEFSNV 175 (258)
Q Consensus 113 l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LP--------f~d~SFD~V~s~~ 175 (258)
..++.+||-.|+| .|..+..+++ .|...|++++.++.... -..-+..... -+.+.||+|+..+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 4567788887764 2334444444 56534777764321100 0001111111 1235689998742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
. ....+.++.+.|+++|+++..
T Consensus 239 g-----~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 239 G-----APKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred C-----CHHHHHHHHHhhcCCCEEEEE
Confidence 2 134578999999999998765
No 339
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=65.41 E-value=41 Score=31.24 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=48.3
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHH-hcCCCcEEEEeCCCCCC---------ceeeecCCCCC---------CCCCCeeE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALK-LVGVSDSIGIDLVPRPP---------LVIKGDFHAQP---------FDNGTFDF 170 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~-~~g~~~v~GvD~s~~~~---------~~~~aDa~~LP---------f~d~SFD~ 170 (258)
..+.++.+||=.|+|. |..+..++ ..|...|+++|.++... .++ |..+.+ ..++.+|+
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i--~~~~~~~~~~~~v~~~~~~g~d~ 259 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCV--NPKDHDKPIQQVLVEMTDGGVDY 259 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEE--cccccchHHHHHHHHHhCCCCcE
Confidence 4467789999998752 22333334 35754689988654211 111 111100 11235888
Q ss_pred EEeccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
|+..+ - . ...+.+..+.|++| |+++..
T Consensus 260 vid~~-g---~-~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 260 TFECI-G---N-VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred EEECC-C---C-hHHHHHHHHhhccCCCeEEEE
Confidence 88731 1 1 23567889999997 988765
No 340
>PLN02256 arogenate dehydrogenase
Probab=64.68 E-value=27 Score=32.33 Aligned_cols=32 Identities=9% Similarity=-0.070 Sum_probs=22.0
Q ss_pred CCEEEEECCCC--CHHHHHHHhcCCCcEEEEeCCC
Q 025071 116 ESKALSIGARV--GQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 116 ~~~VLDIGcGt--G~~~~~L~~~g~~~v~GvD~s~ 148 (258)
+.+|.=||+|. |.++..|.+.|. +|+++|.+.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~ 69 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD 69 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc
Confidence 35788899873 335556666664 799999764
No 341
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=64.41 E-value=23 Score=33.05 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=48.8
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCCC-------CCCCeeEEE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQPF-------DNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf-------~d~SFD~V~ 172 (258)
..+.++.+||=.|||. |..+..+++ .|..+|+++|.++... .++......-++ .++.+|+|+
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 260 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSF 260 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 4567789999999863 334444444 5655799998654211 111100000000 112588888
Q ss_pred eccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
..+ - . ...+.+..+.+++| |++++.
T Consensus 261 d~~-G---~-~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 261 ECI-G---N-VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred ECC-C---C-HHHHHHHHHHhhcCCCeEEEE
Confidence 642 1 1 23567888999997 987765
No 342
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.70 E-value=8.4 Score=35.74 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=67.3
Q ss_pred EEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------CCceeeecCCCCCCCC-CCeeEEEec----ccc------c
Q 025071 119 ALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------PPLVIKGDFHAQPFDN-GTFDFEFSN----VFD------H 178 (258)
Q Consensus 119 VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~~~~~~aDa~~LPf~d-~SFD~V~s~----~l~------h 178 (258)
|+|+-||.|.....|.+.|+.-+.++|+.+. +..+..+|..++...+ ..+|+++.+ .+. .
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~~ 80 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRKG 80 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccCC
Confidence 5899999999999999899866778998531 2234566776654321 258999864 121 1
Q ss_pred cCChH-HHHHHHHhcc---cCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE-Eeeeec--CCCCe
Q 025071 179 ALYPW-KFVGEIERTL---KPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV-AVRKVD--GFGLD 244 (258)
Q Consensus 179 ~~~p~-~~l~Ei~RVL---KPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~-~v~~v~--g~~l~ 244 (258)
..++. ..+.|+.|++ +|- +++...... -.....-.....+.+.|++.|.. ....++ .+|++
T Consensus 81 ~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~---l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvP 148 (315)
T TIGR00675 81 FEDTRGTLFFEIVRILKEKKPK--FFLLENVKG---LVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVP 148 (315)
T ss_pred CCCchhhHHHHHHHHHhhcCCC--EEEeeccHH---HHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCC
Confidence 12343 2344555554 664 333322110 00111111246677778877753 333443 56666
No 343
>PRK06153 hypothetical protein; Provisional
Probab=62.80 E-value=22 Score=34.52 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=25.8
Q ss_pred CCCEEEEECCC-CCH-HHHHHHhcCCCcEEEEeC
Q 025071 115 NESKALSIGAR-VGQ-EVAALKLVGVSDSIGIDL 146 (258)
Q Consensus 115 ~~~~VLDIGcG-tG~-~~~~L~~~g~~~v~GvD~ 146 (258)
.+.+|+=|||| +|. .+..|++.|..+++-+|.
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 45789999998 555 466788999889999994
No 344
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=62.10 E-value=20 Score=29.40 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=31.8
Q ss_pred CCCEEEEECCCCCH-HHHHHHhcCCCcEEEEeCCCC----CCceeeecCCCCCCC-CCCeeEEEe
Q 025071 115 NESKALSIGARVGQ-EVAALKLVGVSDSIGIDLVPR----PPLVIKGDFHAQPFD-NGTFDFEFS 173 (258)
Q Consensus 115 ~~~~VLDIGcGtG~-~~~~L~~~g~~~v~GvD~s~~----~~~~~~aDa~~LPf~-d~SFD~V~s 173 (258)
+.++|++||-|.=. .+..|++.|+ +|+++|+.+. ...+++-|..+-..+ =...|+|.|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEE
Confidence 44599999999654 4567888896 8999999765 234566665541110 035677777
No 345
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=60.93 E-value=54 Score=29.83 Aligned_cols=85 Identities=20% Similarity=0.099 Sum_probs=46.5
Q ss_pred CCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCCC-------CCCCeeEEEeccc
Q 025071 113 LFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQPF-------DNGTFDFEFSNVF 176 (258)
Q Consensus 113 l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf-------~d~SFD~V~s~~l 176 (258)
+.++.+||-.|+| .|..+..+++ .|...|+.++.+..... -...+..+.++ ..+.+|+++...-
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g 252 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVN 252 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCC
Confidence 3467888888764 2333333443 57656878775421100 01111111111 1125888886321
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+.+..+.|+++|+++..
T Consensus 253 -----~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 253 -----NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred -----CHHHHHHHHHHhhcCCeEEEE
Confidence 134578999999999998864
No 346
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=59.99 E-value=44 Score=30.51 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=46.5
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC-------CCCCCee-EEE
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP-------FDNGTFD-FEF 172 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP-------f~d~SFD-~V~ 172 (258)
...++.+||=.|||+ |..+..+++ .|...|+++|.++... .++ +..+.. .....+| +|+
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i--~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTF--NSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEe--cCcccCHHHHHHHhcCCCCCeEEE
Confidence 456788999998753 223333443 5754478887643211 111 111111 1123577 665
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-.+ - . ...+.+..+.|+|||++++.
T Consensus 235 d~~-G---~-~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 235 ETA-G---V-PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred ECC-C---C-HHHHHHHHHHhhcCCEEEEE
Confidence 431 1 1 34568899999999998775
No 347
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=59.67 E-value=28 Score=34.02 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCCCH-H-HHHHHhcCCCcEEEEeCCCCCCceeee-cCCCCCCC--CCCeeEEEeccccccCChHHHH-H
Q 025071 114 FNESKALSIGARVGQ-E-VAALKLVGVSDSIGIDLVPRPPLVIKG-DFHAQPFD--NGTFDFEFSNVFDHALYPWKFV-G 187 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~-~-~~~L~~~g~~~v~GvD~s~~~~~~~~a-Da~~LPf~--d~SFD~V~s~~l~h~~~p~~~l-~ 187 (258)
..+.+|+=+|+|.=. . +..++..|. +|+.+|.++........ .+.-.+.. -...|+|+..+ -.+. .+ .
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~-vI~~ 283 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKD-VITA 283 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHH-HHHH
Confidence 478899999998422 2 223445675 79999986543210000 00001111 13679988742 1222 34 4
Q ss_pred HHHhcccCCcEEEEE
Q 025071 188 EIERTLKPAGVCVLH 202 (258)
Q Consensus 188 Ei~RVLKPGG~lii~ 202 (258)
+..+.+|+|++++..
T Consensus 284 ~~~~~mK~GailiNv 298 (425)
T PRK05476 284 EHMEAMKDGAILANI 298 (425)
T ss_pred HHHhcCCCCCEEEEc
Confidence 788999999988775
No 348
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.04 E-value=24 Score=28.73 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=46.3
Q ss_pred CCEEEEECCCCCH-HHHHHHhcCCCcEEEEeCCCCCC----ceeeecCCCCCCC-CCCeeEEEeccccccCChHHHHHHH
Q 025071 116 ESKALSIGARVGQ-EVAALKLVGVSDSIGIDLVPRPP----LVIKGDFHAQPFD-NGTFDFEFSNVFDHALYPWKFVGEI 189 (258)
Q Consensus 116 ~~~VLDIGcGtG~-~~~~L~~~g~~~v~GvD~s~~~~----~~~~aDa~~LPf~-d~SFD~V~s~~l~h~~~p~~~l~Ei 189 (258)
.++|.+||.|-=. .+.+|++.|+ +++++|+.+... .+++.|..+--.. =...|+|.| +. -|....+-+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYS--iR---pppEl~~~i 87 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYS--IR---PPPELQSAI 87 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC-cEEEEecccccCcccceEEEccCCCccHHHhhCccceee--cC---CCHHHHHHH
Confidence 4599999988544 3567888997 799999975422 2455555431110 023577776 21 233444445
Q ss_pred HhcccCCc-EEEEE
Q 025071 190 ERTLKPAG-VCVLH 202 (258)
Q Consensus 190 ~RVLKPGG-~lii~ 202 (258)
.+|-|.=| -+++.
T Consensus 88 ldva~aVga~l~I~ 101 (129)
T COG1255 88 LDVAKAVGAPLYIK 101 (129)
T ss_pred HHHHHhhCCCEEEE
Confidence 55555434 44443
No 349
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=58.95 E-value=6.8 Score=39.07 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=57.4
Q ss_pred CCEEEEECCCCCHHHHHHHh-c-CCCcEEEEeCCCCCC----------------ceeeecCC----CCCCCCCCeeEEEe
Q 025071 116 ESKALSIGARVGQEVAALKL-V-GVSDSIGIDLVPRPP----------------LVIKGDFH----AQPFDNGTFDFEFS 173 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~-~-g~~~v~GvD~s~~~~----------------~~~~aDa~----~LPf~d~SFD~V~s 173 (258)
+-+|||.=|++|--+...+. . |...|++-|.++... ....+|+. ..|-.+..||+|=.
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL 189 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL 189 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence 45799999999987655543 3 456788888764321 12233433 33445689999864
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-.-.|..++.-..|.++.||.+.++
T Consensus 190 ---DPyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 190 ---DPYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ---CCCCCccHHHHHHHHHhhcCCEEEEE
Confidence 33335678889999999999999997
No 350
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=58.18 E-value=8.3 Score=32.99 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=25.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 025071 10 LLLKPFFVSLFFSFFLLTFLCLSRSPHHRKPTTGTPS 46 (258)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (258)
++|.-||||++|.|.+-.||.+.|+ .|-+..+.++
T Consensus 93 L~LgTffIS~~LilSvA~FFYLKrs--~kLP~vfYrr 127 (180)
T PF14946_consen 93 LFLGTFFISLGLILSVASFFYLKRS--SKLPHVFYRR 127 (180)
T ss_pred HHHHHHHHHHHHHHHHhhheeeccc--ccCCcccccc
Confidence 5788999999999998888877654 3445545444
No 351
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=58.16 E-value=64 Score=29.22 Aligned_cols=82 Identities=16% Similarity=0.026 Sum_probs=46.1
Q ss_pred CCCCCCEEEEECCCCCHHHH---HHH-hcCCCcEEEEeCCCCCC---------ceeeecCCCCCC--------CCCCeeE
Q 025071 112 FLFNESKALSIGARVGQEVA---ALK-LVGVSDSIGIDLVPRPP---------LVIKGDFHAQPF--------DNGTFDF 170 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~---~L~-~~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf--------~d~SFD~ 170 (258)
.+.++.+||=.|+ |.... .++ ..|...+++++.++... .++ +..+..+ ++..+|+
T Consensus 163 ~~~~g~~vlI~g~--g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v--~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 163 KVKPGDTVAIVGA--GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTV--NSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCcee--ccccccHHHHHHHHhCCCCCCE
Confidence 4567778877776 44433 333 35645688887643210 111 1111111 2345898
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+..+ .. ...+.++.|.|+++|.++..
T Consensus 239 vld~~----g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 239 VIEAV----GI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred EEECC----CC-HHHHHHHHHhccCCcEEEEe
Confidence 88742 11 23568888999999998764
No 352
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=56.75 E-value=14 Score=34.46 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=41.1
Q ss_pred CCCeeEEEec-cccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCC-CChhHHHHHhhcCceEEeee
Q 025071 165 NGTFDFEFSN-VFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDL-FSVKPLVKLFRESELVAVRK 237 (258)
Q Consensus 165 d~SFD~V~s~-~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~-~s~~~l~~lf~~~~~~~v~~ 237 (258)
.+-||+|+.+ ...|...|. +.++++|||.+++..... .-....... --.+.+.++++++|+..+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf--mvdLrKEq~~~F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF--MVDLRKEQLQEFVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh--heeCCHHHHHHHHHHHHHHHHHCCCccccc
Confidence 4789999874 555555554 888999999999975411 000011111 01466888899998876543
No 353
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=56.46 E-value=18 Score=34.87 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=37.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCc---eeeecCCCCCCC
Q 025071 112 FLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPL---VIKGDFHAQPFD 164 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~---~~~aDa~~LPf~ 164 (258)
.+.++++||.|..|..+...+|.+. .++|++||+++.... ...+-+..|||+
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlAair~L~y~ 86 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLAAIRALPYE 86 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHHHHHcCCHH
Confidence 4678899999999988877776654 468999999865431 234445566654
No 354
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=56.45 E-value=14 Score=35.53 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCCEEEEECCCCCHHHHHHH-h-cCCCcEEEEeCCCCC--------------C---ceeeecCCCCC-CCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVAALK-L-VGVSDSIGIDLVPRP--------------P---LVIKGDFHAQP-FDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~-~-~g~~~v~GvD~s~~~--------------~---~~~~aDa~~LP-f~d~SFD~V~s~ 174 (258)
.+-+|||.=+|+|--+...+ + .|...|+.-|+++.. . .+...|+..+= ...+.||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 34589999999998765544 4 355689999987521 1 23445655432 256789999653
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
-.-.|..++.-..+.+|.||.+.++.
T Consensus 129 ---PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ---PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 22357889999999999999999983
No 355
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=55.24 E-value=19 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 165 NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++.+|+|+-++ . -...+++...+|+|||.+++.
T Consensus 56 ~~~~d~vid~~-g----~~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 56 GRGVDVVIDCV-G----SGDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp TSSEEEEEESS-S----SHHHHHHHHHHEEEEEEEEEE
T ss_pred cccceEEEEec-C----cHHHHHHHHHHhccCCEEEEE
Confidence 35799998742 1 145678999999999999887
No 356
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=54.80 E-value=1.3e+02 Score=27.37 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=48.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCC--------------CCceeeecCCCCCCCC---CCeeEEEec--
Q 025071 115 NESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPR--------------PPLVIKGDFHAQPFDN---GTFDFEFSN-- 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~--------------~~~~~~aDa~~LPf~d---~SFD~V~s~-- 174 (258)
.|.+||.||=+--. +.+++-. ...+|+-+|+.+. +......|.. -|++. ++||++++.
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR-~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLR-DPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TT-S---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccc-ccCCHHHhcCCCEEEeCCC
Confidence 67899999955432 2233322 2358999998531 2234555654 35554 799999995
Q ss_pred -cccccCChHHHHHHHHhcccCCc-EEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceE
Q 025071 175 -VFDHALYPWKFVGEIERTLKPAG-VCVLHVALSRRADKYSANDLFSVKPLVKLFRESELV 233 (258)
Q Consensus 175 -~l~h~~~p~~~l~Ei~RVLKPGG-~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~ 233 (258)
.++. -..+++.-...||.-| ..++.... ++ .......++.+.+.+.|++
T Consensus 122 yT~~G---~~LFlsRgi~~Lk~~g~~gy~~~~~-~~------~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 122 YTPEG---LKLFLSRGIEALKGEGCAGYFGFTH-KE------ASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp SSHHH---HHHHHHHHHHTB-STT-EEEEEE-T-TT--------HHHHHHHHHHHHTS--E
T ss_pred CCHHH---HHHHHHHHHHHhCCCCceEEEEEec-Cc------CcHHHHHHHHHHHHHCCcC
Confidence 2211 1346677777888766 44443321 10 0011123567777778865
No 357
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=54.40 E-value=16 Score=32.77 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=72.3
Q ss_pred EEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCC--------CceeeecCCCCC---CCCCCeeEEEec----cccc----
Q 025071 118 KALSIGARVGQEVAALKLVGVSDSIGIDLVPRP--------PLVIKGDFHAQP---FDNGTFDFEFSN----VFDH---- 178 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~--------~~~~~aDa~~LP---f~d~SFD~V~s~----~l~h---- 178 (258)
+++|+=||.|.....|.+.|+..+.++|+++.. +....+|..++. ++. .+|+++.+ .+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~ 80 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFPEVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKR 80 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHTEEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcccccccccccccccccccc-cceEEEeccCCceEeccccc
Confidence 689999999999999999998778999986421 156677777665 443 59999874 2221
Q ss_pred --cCChHH----HHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce-EEeeeec--CCCCe
Q 025071 179 --ALYPWK----FVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL-VAVRKVD--GFGLD 244 (258)
Q Consensus 179 --~~~p~~----~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~-~~v~~v~--g~~l~ 244 (258)
..++.. .+-++.+.+||--.++=-|+.-. ........+.+.+.|++.|. +....++ .+|.+
T Consensus 81 ~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~-----~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvP 150 (335)
T PF00145_consen 81 KGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLL-----SSKNGEVFKEILEELEELGYNVQWRVLNAADYGVP 150 (335)
T ss_dssp HCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGG-----TGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSS
T ss_pred cccccccchhhHHHHHHHhhccceEEEecccceee-----ccccccccccccccccccceeehhccccHhhCCCC
Confidence 123322 23455666788443333343210 11111235778888998885 3444444 67777
No 358
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=54.34 E-value=69 Score=27.23 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=44.1
Q ss_pred CCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCC--------CCCCceeeecCC-CCCC---CCCCeeEEEeccc-cccCC
Q 025071 116 ESKALSIGARVGQEVAALKLV-GVSDSIGIDLV--------PRPPLVIKGDFH-AQPF---DNGTFDFEFSNVF-DHALY 181 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s--------~~~~~~~~aDa~-~LPf---~d~SFD~V~s~~l-~h~~~ 181 (258)
.+-|||+|=|+|+.-..|++. ...+++.+|.. +....++.||+. .||. -....-++... + .| +
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD-~G~g--~ 105 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHAD-IGTG--D 105 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE-----S---
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEee-cCCC--C
Confidence 367999999999999999874 44679999952 112246777754 2332 22233333331 1 11 2
Q ss_pred hHH-------HHHHHHhcccCCcEEEEE
Q 025071 182 PWK-------FVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 182 p~~-------~l~Ei~RVLKPGG~lii~ 202 (258)
+++ .-.=|..+|.|||+++=.
T Consensus 106 ~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 106 KEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred cchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 222 124578899999987653
No 359
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=53.09 E-value=53 Score=29.95 Aligned_cols=87 Identities=20% Similarity=0.110 Sum_probs=47.3
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHH-hcCCCcEEEEeCCCCCCce-------eeecCCCCCC--------CCCCeeEEEe
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALK-LVGVSDSIGIDLVPRPPLV-------IKGDFHAQPF--------DNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~-~~g~~~v~GvD~s~~~~~~-------~~aDa~~LPf--------~d~SFD~V~s 173 (258)
..+.++.+||=.|+| .|..+..++ ..|...|++++.++..... ...+..+..+ .++.+|+|+.
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid 247 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFD 247 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEE
Confidence 345678888888864 122233333 3565468888754321000 0011111111 2234898886
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++- ....++++.+.|++||.++..
T Consensus 248 ~~g-----~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 248 CAG-----VQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCC-----CHHHHHHHHHhccCCCEEEEE
Confidence 421 123568899999999998765
No 360
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=53.06 E-value=53 Score=32.13 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=50.2
Q ss_pred CCCEEEEECCC-CCHH-HHHHHhcCCCcEEEEeCCCCCCc--eeeecCCCCCCCC-----CCeeEEEec--cccccCChH
Q 025071 115 NESKALSIGAR-VGQE-VAALKLVGVSDSIGIDLVPRPPL--VIKGDFHAQPFDN-----GTFDFEFSN--VFDHALYPW 183 (258)
Q Consensus 115 ~~~~VLDIGcG-tG~~-~~~L~~~g~~~v~GvD~s~~~~~--~~~aDa~~LPf~d-----~SFD~V~s~--~l~h~~~p~ 183 (258)
.+.+||=||.| +|.. +.+|.+.|...++-+..+..... ..+-.++.++|++ +.+|+|+|+ +-+.+..
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~-- 254 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIIT-- 254 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccC--
Confidence 56789999999 6665 45677888767766554322110 1111133344433 679999995 2222222
Q ss_pred HHHHHHHhcccCCc-EEEEEeccccC
Q 025071 184 KFVGEIERTLKPAG-VCVLHVALSRR 208 (258)
Q Consensus 184 ~~l~Ei~RVLKPGG-~lii~v~~~~~ 208 (258)
-..+.+.+++-- .+++-.+.+|.
T Consensus 255 --~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 255 --REMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred --HHHHHHHHhcccCeEEEEecCCCC
Confidence 244556666533 45554555554
No 361
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=52.73 E-value=55 Score=31.83 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=47.2
Q ss_pred CCCCCEEEEECCCC-CHHHH-HHHhcCCCcEEEEeCCCCCCc------eeeecCCCCCCCCCCeeEEEeccccccCChHH
Q 025071 113 LFNESKALSIGARV-GQEVA-ALKLVGVSDSIGIDLVPRPPL------VIKGDFHAQPFDNGTFDFEFSNVFDHALYPWK 184 (258)
Q Consensus 113 l~~~~~VLDIGcGt-G~~~~-~L~~~g~~~v~GvD~s~~~~~------~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~ 184 (258)
...+.+|+=+|||. |.... .++..|. +|+++|.++.... +...+.++. . ...|+|++.. ..+..
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~v~~leea-l--~~aDVVItaT----G~~~v 263 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFRVMTMEEA-A--KIGDIFITAT----GNKDV 263 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCEeCCHHHH-H--hcCCEEEECC----CCHHH
Confidence 35788999999996 33332 3344565 7999987653211 111111110 1 2468888731 12222
Q ss_pred HHHHHHhcccCCcEEEEE
Q 025071 185 FVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 185 ~l~Ei~RVLKPGG~lii~ 202 (258)
.-.+....+|||++++..
T Consensus 264 I~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 264 IRGEHFENMKDGAIVANI 281 (406)
T ss_pred HHHHHHhcCCCCcEEEEE
Confidence 224688899999988775
No 362
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=52.62 E-value=28 Score=31.97 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCC
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVP 148 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~ 148 (258)
.+.++.+||=.|||+ |..+..+++ .|. +|+++|.++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~ 200 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDP 200 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCH
Confidence 456788999999964 444444444 565 688888653
No 363
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=52.57 E-value=51 Score=29.86 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=46.7
Q ss_pred CCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCC--------CCCCCeeEEEeccc
Q 025071 114 FNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQP--------FDNGTFDFEFSNVF 176 (258)
Q Consensus 114 ~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LP--------f~d~SFD~V~s~~l 176 (258)
.++.+||-.|+|. |..+..+++ .|...++.++.++..... ...+..+-+ -.++.+|+|+....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 241 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCC
Confidence 4677888777653 344444443 565457777643221100 011111111 12356888886321
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+.++.+.|+++|.++..
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 242 -----APSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred -----CHHHHHHHHHHHhcCCEEEEE
Confidence 134678899999999998776
No 364
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.09 E-value=32 Score=32.79 Aligned_cols=87 Identities=22% Similarity=0.160 Sum_probs=52.5
Q ss_pred cCCCCCCEEEEECCCCCHHHHHH--HhcCCCcEEEEeCCCCCCc--------eee--ecCCCC---------CCCCCCee
Q 025071 111 HFLFNESKALSIGARVGQEVAAL--KLVGVSDSIGIDLVPRPPL--------VIK--GDFHAQ---------PFDNGTFD 169 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L--~~~g~~~v~GvD~s~~~~~--------~~~--aDa~~L---------Pf~d~SFD 169 (258)
+.++.+++||-+|+|+=.+..-+ +..|..+|+.+|+++.+.. ... ...... -+.+..||
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 45778999999999974443332 3468889999998653210 110 000000 12334589
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+++..+-- +..++-....+|+||.+++.
T Consensus 245 ~~~dCsG~-----~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 245 VTFDCSGA-----EVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred eEEEccCc-----hHHHHHHHHHhccCCEEEEe
Confidence 88875321 23345567799999996664
No 365
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=51.97 E-value=79 Score=28.29 Aligned_cols=82 Identities=15% Similarity=0.042 Sum_probs=46.2
Q ss_pred cCCCCCCEEEEECCCCCHHHH---HHH-hcCCCcEEEEeCCCCCCce-------eeecCCCCCCCCCCeeEEEecccccc
Q 025071 111 HFLFNESKALSIGARVGQEVA---ALK-LVGVSDSIGIDLVPRPPLV-------IKGDFHAQPFDNGTFDFEFSNVFDHA 179 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~---~L~-~~g~~~v~GvD~s~~~~~~-------~~aDa~~LPf~d~SFD~V~s~~l~h~ 179 (258)
..+.++.+||=.||| .... .++ ..|. +++.++.+...... ..-+.... .++.+|+++..+-
T Consensus 163 ~~~~~~~~vlV~g~g--~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~vD~vi~~~~--- 234 (329)
T cd08298 163 AGLKPGQRLGLYGFG--ASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGDSDDL--PPEPLDAAIIFAP--- 234 (329)
T ss_pred hCCCCCCEEEEECCc--HHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEeccCcc--CCCcccEEEEcCC---
Confidence 345677888888765 3433 233 3564 78877754321100 00111111 3456888875311
Q ss_pred CChHHHHHHHHhcccCCcEEEEE
Q 025071 180 LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 180 ~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+.++.|.|++||.++..
T Consensus 235 --~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 235 --VGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred --cHHHHHHHHHHhhcCCEEEEE
Confidence 124578999999999998864
No 366
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=51.64 E-value=29 Score=33.79 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=58.4
Q ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHhc-CCCcEEEEeCCCCCC------------------------ceeeecCCCC
Q 025071 107 LKQRHFLFNESKALSIGARVGQEVAALKLV-GVSDSIGIDLVPRPP------------------------LVIKGDFHAQ 161 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~-g~~~v~GvD~s~~~~------------------------~~~~aDa~~L 161 (258)
++++..+.++....|+|.|.|+.+..++.+ ++..-+|+++...+. ..+.+++..-
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 334446778889999999999999888765 456678988754321 1122322111
Q ss_pred CC---CCCCeeEEEeccccccCChHHH--HHHHHhcccCCcEEEEE
Q 025071 162 PF---DNGTFDFEFSNVFDHALYPWKF--VGEIERTLKPAGVCVLH 202 (258)
Q Consensus 162 Pf---~d~SFD~V~s~~l~h~~~p~~~--l~Ei~RVLKPGG~lii~ 202 (258)
-+ -+..-++|+++.+- .+|+.. +.|+..-+|+|=+++=.
T Consensus 264 ~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNNVA--FDPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HHHHHHhhcceEEEEeccc--CCHHHHHhhHHHHhhCCCcceEecc
Confidence 11 12345677775221 245443 46999999998887664
No 367
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=51.29 E-value=96 Score=28.68 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=47.0
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHH-hcCCCcEEEEeCCCCC---------CceeeecCCCC--C-------CCCCCeeE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALK-LVGVSDSIGIDLVPRP---------PLVIKGDFHAQ--P-------FDNGTFDF 170 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~-~~g~~~v~GvD~s~~~---------~~~~~aDa~~L--P-------f~d~SFD~ 170 (258)
..+.++.+||=.|+|. |..+..++ ..|...+++++.++.. ..++. ..+. + ..++.+|+
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~--~~~~~~~~~~~l~~~~~~~~d~ 256 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECIN--PRDQDKPIVEVLTEMTDGGVDY 256 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecc--cccccchHHHHHHHHhCCCCcE
Confidence 4466788888887642 22223333 3576557888754211 01111 1111 1 11245888
Q ss_pred EEeccccccCChHHHHHHHHhccc-CCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLK-PAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLK-PGG~lii~ 202 (258)
|+..+ . . ...+.+..+.|+ ++|.++..
T Consensus 257 vid~~-g---~-~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 257 AFEVI-G---S-ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred EEECC-C---C-HHHHHHHHHHhccCCCEEEEE
Confidence 88632 1 1 345678999999 99998765
No 368
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=51.13 E-value=58 Score=30.09 Aligned_cols=87 Identities=23% Similarity=0.201 Sum_probs=47.1
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecC--CCC-----CCCCCCeeEEE
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDF--HAQ-----PFDNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa--~~L-----Pf~d~SFD~V~ 172 (258)
..+.++.+||=.|+| .|..+..+++ .|..+|+++|.++... .++..+. .++ ....+.+|+|+
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 346778999999864 1222333343 5655788988653211 1111100 000 01123578887
Q ss_pred eccccccCChHHHHHHHHhcccCC-cEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPA-GVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPG-G~lii~ 202 (258)
..+= ....+.+..+.+++| |++++.
T Consensus 263 d~~G-----~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 263 ECTG-----NIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred ECCC-----ChHHHHHHHHHhhcCCCEEEEE
Confidence 6311 133567788899996 888764
No 369
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=51.01 E-value=1.2e+02 Score=26.26 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=47.0
Q ss_pred cCCCCCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCCC--------CCCCeeEEE
Q 025071 111 HFLFNESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQPF--------DNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LPf--------~d~SFD~V~ 172 (258)
..+.++..||-.||. .|..+..+++ .|. .|++++.+...... ...+.....+ ....+|.++
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVY 213 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEE
Confidence 446678899999983 3444444443 565 58888764321100 0001111111 234588888
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.++- .....++.+.++++|.++..
T Consensus 214 ~~~g------~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 214 DPVG------GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred ECcc------HHHHHHHHHhhccCCEEEEE
Confidence 6421 13456788999999987764
No 370
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=49.78 E-value=1.2e+02 Score=28.18 Aligned_cols=92 Identities=22% Similarity=0.193 Sum_probs=49.5
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCCCc------eeeecCCCC-------CCCCCCeeEEEecc
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRPPL------VIKGDFHAQ-------PFDNGTFDFEFSNV 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~~~------~~~aDa~~L-------Pf~d~SFD~V~s~~ 175 (258)
..+.++.+||-.|||. |..+..+++ .|...++++|.+..... ....+...- .+.+..+|+|+..+
T Consensus 172 ~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~~~~~d~v~d~~ 251 (375)
T cd08282 172 AGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLEPGGVDRAVDCV 251 (375)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhhCCCCCEEEECC
Confidence 3456778888888752 333334443 56546888875421100 000011110 01124589988741
Q ss_pred ----cccc--CChHHHHHHHHhcccCCcEEEEE
Q 025071 176 ----FDHA--LYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 ----l~h~--~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.++. .++...+.+..++|+++|.++..
T Consensus 252 g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 252 GYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred CCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 1111 13445678999999999998653
No 371
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.68 E-value=25 Score=31.64 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=47.5
Q ss_pred EEEEECCCC--CHHHHHHHhcCCCcEEEEeCCCCCCc------------------------------e-eeecCCCCCCC
Q 025071 118 KALSIGARV--GQEVAALKLVGVSDSIGIDLVPRPPL------------------------------V-IKGDFHAQPFD 164 (258)
Q Consensus 118 ~VLDIGcGt--G~~~~~L~~~g~~~v~GvD~s~~~~~------------------------------~-~~aDa~~LPf~ 164 (258)
+|--||+|. +..+..++..|. +|+++|.++.... + ...|.+ .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~----~ 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD----D 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH----H
Confidence 577788883 334556667776 7999997542110 0 011111 1
Q ss_pred CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEE
Q 025071 165 NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
-+..|+|+-++-+...-...+++++.+.++|+..+.
T Consensus 80 ~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 80 LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 145688887654443334578899999999987663
No 372
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=49.61 E-value=36 Score=32.88 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=58.5
Q ss_pred CCEEEEECCCCCHHHHHHH-hcCCCcEEEEeCCCCC---------------CceeeecCCCCCCC-CCCeeEEEeccccc
Q 025071 116 ESKALSIGARVGQEVAALK-LVGVSDSIGIDLVPRP---------------PLVIKGDFHAQPFD-NGTFDFEFSNVFDH 178 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~-~~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf~-d~SFD~V~s~~l~h 178 (258)
..+|||.=+|||--+...+ +.+...|+.-|+++.. ..+...|+..+=.. ...||+|=. +-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi---DP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI---DP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec---CC
Confidence 6789999999998776555 4554479999987632 12333455444333 356777743 33
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.-.|.-++.-..|..|.||.+.++
T Consensus 130 FGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 130 FGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCCCchHHHHHHHHhhcCCEEEEE
Confidence 335778888999999999999997
No 373
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=49.43 E-value=6.8 Score=30.83 Aligned_cols=14 Identities=29% Similarity=0.575 Sum_probs=11.1
Q ss_pred EEEECCCCCHHHHH
Q 025071 119 ALSIGARVGQEVAA 132 (258)
Q Consensus 119 VLDIGcGtG~~~~~ 132 (258)
=+|||||.|+.-.+
T Consensus 6 NIDIGcG~GNTmda 19 (124)
T PF07101_consen 6 NIDIGCGAGNTMDA 19 (124)
T ss_pred ccccccCCCcchhh
Confidence 37999999986544
No 374
>PLN02494 adenosylhomocysteinase
Probab=48.37 E-value=40 Score=33.54 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=51.5
Q ss_pred HHHHHHh-cCCCCCCEEEEECCCC-CHH-HHHHHhcCCCcEEEEeCCCCCCceee-ecCCCCCCCC--CCeeEEEec-cc
Q 025071 104 FQDLKQR-HFLFNESKALSIGARV-GQE-VAALKLVGVSDSIGIDLVPRPPLVIK-GDFHAQPFDN--GTFDFEFSN-VF 176 (258)
Q Consensus 104 ~~~L~~~-~~l~~~~~VLDIGcGt-G~~-~~~L~~~g~~~v~GvD~s~~~~~~~~-aDa~~LPf~d--~SFD~V~s~-~l 176 (258)
++.++.. +....+.+|+=+|+|. |.. +..++..|. +|+.+|.++....... ..+...+.++ ...|+|++. .-
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt 319 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGN 319 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCC
Confidence 4444443 3335688999999994 322 233344675 7999988653211000 0011112211 357988874 21
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.| ....+..+.+||||+++-.
T Consensus 320 ~~-----vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 320 KD-----IIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred cc-----chHHHHHhcCCCCCEEEEc
Confidence 22 1236788899999998875
No 375
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=47.85 E-value=1.8e+02 Score=25.03 Aligned_cols=83 Identities=22% Similarity=0.093 Sum_probs=45.9
Q ss_pred CCCCCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCC--CCCCCeeEEEecccc
Q 025071 112 FLFNESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQP--FDNGTFDFEFSNVFD 177 (258)
Q Consensus 112 ~l~~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LP--f~d~SFD~V~s~~l~ 177 (258)
.+.++.+||=.|+. .|..+..+++ .|. +++.++.+. .. .++........ -....+|+++..+
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~-- 216 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTV-- 216 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECC--
Confidence 35678899988872 3444444443 464 577666433 11 11111110110 1234588888642
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
......++.+.|+++|.++..
T Consensus 217 ----~~~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 217 ----GGETLARSLALVKPGGRLVSI 237 (309)
T ss_pred ----chHHHHHHHHHHhcCcEEEEE
Confidence 122567889999999998765
No 376
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=47.75 E-value=31 Score=32.11 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=73.1
Q ss_pred CEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCC---------C-CceeeecCCCCCCC---CCCeeEEEec----cccc-
Q 025071 117 SKALSIGARVGQEVAALKLVGVSDSIGIDLVPR---------P-PLVIKGDFHAQPFD---NGTFDFEFSN----VFDH- 178 (258)
Q Consensus 117 ~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~---------~-~~~~~aDa~~LPf~---d~SFD~V~s~----~l~h- 178 (258)
-+++|+=||.|.....+...|+.-+.++|+.+. + ..+...|..++.-+ ...+|+++.+ .|..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~a 83 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIA 83 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhc
Confidence 479999999999999999999877889998642 2 23444454433221 1179999974 2221
Q ss_pred -----cCChH----HHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce-EEeeeec--CCCCe
Q 025071 179 -----ALYPW----KFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL-VAVRKVD--GFGLD 244 (258)
Q Consensus 179 -----~~~p~----~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~-~~v~~v~--g~~l~ 244 (258)
..|+. ..+.++...++| .+++...... .. +. .....+.+.+.|++.|. +....+| .+|++
T Consensus 84 G~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g--l~-~~-~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvP 155 (328)
T COG0270 84 GKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG--LL-SS-KGQTFDEIKKELEELGYGVEFNILNAADYGVP 155 (328)
T ss_pred CcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch--HH-hc-CchHHHHHHHHHHHcCCcchHheeeHHhcCCC
Confidence 22333 223567777888 4444322210 00 11 22246888999999987 4333333 66776
No 377
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=46.94 E-value=59 Score=30.21 Aligned_cols=85 Identities=9% Similarity=-0.089 Sum_probs=44.5
Q ss_pred CCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeCCCCCCc-eeee-cCCCCCCCCCCeeEEEeccccccCChHHH-HHHH
Q 025071 115 NESKALSIGARV-GQ-EVAALKLVGVSDSIGIDLVPRPPL-VIKG-DFHAQPFDNGTFDFEFSNVFDHALYPWKF-VGEI 189 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~s~~~~~-~~~a-Da~~LPf~d~SFD~V~s~~l~h~~~p~~~-l~Ei 189 (258)
.+.+|.=||+|. |. .+..|...|. +|++.|..+.... +... ...++.-.-..-|+|+.. +..-..-... -++.
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~-lPlt~~T~~li~~~~ 212 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINL-LPNTPETVGIINQQL 212 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEEC-CCCCHHHHHHhHHHH
Confidence 467899999994 64 3455666776 7999997543211 1110 011111001245877763 1111111122 2577
Q ss_pred HhcccCCcEEEE
Q 025071 190 ERTLKPAGVCVL 201 (258)
Q Consensus 190 ~RVLKPGG~lii 201 (258)
...+|||.+++=
T Consensus 213 l~~mk~ga~lIN 224 (312)
T PRK15469 213 LEQLPDGAYLLN 224 (312)
T ss_pred HhcCCCCcEEEE
Confidence 788999875443
No 378
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.56 E-value=84 Score=28.34 Aligned_cols=85 Identities=18% Similarity=0.115 Sum_probs=47.8
Q ss_pred cCCCCCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCC-------CceeeecCCC----C-CCCCCCeeEEEecc
Q 025071 111 HFLFNESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRP-------PLVIKGDFHA----Q-PFDNGTFDFEFSNV 175 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~-------~~~~~aDa~~----L-Pf~d~SFD~V~s~~ 175 (258)
..+.++.+||=.|+. .|..+..+++ .|. ++++++.+... ...+...... . -..+..+|+|+..+
T Consensus 173 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 251 (350)
T cd08274 173 AGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVV 251 (350)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCchhhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecC
Confidence 346678899999982 3444444443 565 57777643210 0011100000 0 01234689998742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
- ...+.++.+.|+++|.++..
T Consensus 252 g------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 252 G------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred C------HHHHHHHHHHhccCCEEEEe
Confidence 2 13467899999999998754
No 379
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=45.49 E-value=1.5e+02 Score=28.05 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=48.0
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCC--------CceeeecC-CCCC------CCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRP--------PLVIKGDF-HAQP------FDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~--------~~~~~aDa-~~LP------f~d~SFD~V~s~ 174 (258)
.+.++.+||=.|+|. |..+..+++ .|...++.+|.++.. ...+.... ..++ .....+|+|+..
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~ 261 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDC 261 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEEC
Confidence 456778888777752 333333443 576556666654311 01111000 0000 122458999873
Q ss_pred -cccc--------cCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 -VFDH--------ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 -~l~h--------~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.-.. ..++...+++..+++++||++++.
T Consensus 262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 262 VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 1110 012335788999999999998875
No 380
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=45.37 E-value=71 Score=26.45 Aligned_cols=64 Identities=22% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHHhcCCCcEEEEeCCC-----CCC--ceeeecCCCCCCCC-CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 132 ALKLVGVSDSIGIDLVP-----RPP--LVIKGDFHAQPFDN-GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 132 ~L~~~g~~~v~GvD~s~-----~~~--~~~~aDa~~LPf~d-~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
++...|+ +|.+.+.-. .+. .+..+|-...+... +.+|++++. ++ ..+.....-|||||.+++-.
T Consensus 15 a~~~~G~-~v~~~~~ygs~~rGG~~~~~vris~~~~~~~~~~~~~Dilv~l------~~-~~~~~~~~~l~~~g~vi~ns 86 (173)
T PF01558_consen 15 AAAREGY-YVQSTPEYGSEIRGGPVVSHVRISDEPIIPSPPVGEADILVAL------DP-EALERHLKGLKPGGVVIINS 86 (173)
T ss_dssp HHHHTTS-EEEEEEEEESSSSSSCEEEEEEEESS--SSSS-TSSESEEEES------SH-HHHHHCGTTCETTEEEEEET
T ss_pred HHHHcCC-CEEEEeCCChhhcCCeEEEEEEEecCcCccCcccCCCCEEEEc------CH-HHHHHHhcCcCcCeEEEEEC
Confidence 3345675 576666311 111 24455542334444 899999984 34 33457788899999999964
No 381
>PRK10083 putative oxidoreductase; Provisional
Probab=45.33 E-value=51 Score=29.73 Aligned_cols=85 Identities=19% Similarity=0.103 Sum_probs=46.4
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHHh--cCCCcEEEEeCCCCCC---------ceeeecCCCCCC------CCCCeeEEE
Q 025071 111 HFLFNESKALSIGARV-GQEVAALKL--VGVSDSIGIDLVPRPP---------LVIKGDFHAQPF------DNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~~--~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf------~d~SFD~V~ 172 (258)
..+.++.+||=.|+|. |..+..+++ .|...++++|.++... .++ +..+.++ ....+|+|+
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i--~~~~~~~~~~~~~~g~~~d~vi 233 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVI--NNAQEPLGEALEEKGIKPTLII 233 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEe--cCccccHHHHHhcCCCCCCEEE
Confidence 3466788999999652 222333444 3765688887643210 011 1111111 112345776
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..+- . ...+.+..+.|++||+++..
T Consensus 234 d~~g----~-~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 234 DAAC----H-PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred ECCC----C-HHHHHHHHHHhhcCCEEEEE
Confidence 5321 1 23568999999999998875
No 382
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=45.09 E-value=36 Score=30.78 Aligned_cols=47 Identities=13% Similarity=-0.053 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHH---hcCCCcEEEEeCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALK---LVGVSDSIGIDLV 147 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~---~~g~~~v~GvD~s 147 (258)
++++++.+....-..+-++.|-.||.|.+..-+. ......|+|-|++
T Consensus 37 sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId 86 (246)
T PF11599_consen 37 SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDID 86 (246)
T ss_dssp HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-
T ss_pred HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCC
Confidence 4555554432111344689999999999865443 2224579999985
No 383
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.87 E-value=1.2e+02 Score=26.48 Aligned_cols=82 Identities=23% Similarity=0.201 Sum_probs=47.9
Q ss_pred CCCCCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCC--------C-ceeeecCCCC-----CCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRP--------P-LVIKGDFHAQ-----PFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~--------~-~~~~aDa~~L-----Pf~d~SFD~V~s~ 174 (258)
.+.++.+||=.|++ .|..+..+++ .|. +|++++.++.. . .+. .+...+ .+ .+.+|+++..
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~i~~~-~~~~d~vl~~ 215 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVV-IDDGAIAEQLRAA-PGGFDKVLEL 215 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEE-ecCccHHHHHHHh-CCCceEEEEC
Confidence 45678899998873 4445555554 564 58777654311 0 111 111000 01 3568988874
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+- ...+.+..+.|+++|+++..
T Consensus 216 ~~------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 216 VG------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CC------hHHHHHHHHHhccCCEEEEE
Confidence 21 23568899999999998764
No 384
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=44.53 E-value=53 Score=30.27 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=56.0
Q ss_pred CCCEEEEECCCC-CHH-HHHHHhcCCCcEEEEeCCCCCC-c------eeeecCCCCCCCCCCeeEEEec-cccccCChHH
Q 025071 115 NESKALSIGARV-GQE-VAALKLVGVSDSIGIDLVPRPP-L------VIKGDFHAQPFDNGTFDFEFSN-VFDHALYPWK 184 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~-~~~L~~~g~~~v~GvD~s~~~~-~------~~~aDa~~LPf~d~SFD~V~s~-~l~h~~~p~~ 184 (258)
++.+|+-+|||. |.. +..|...|..+|+.+|.++... . ....+..++.-.-...|+|++. .-.+ +..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~---~~~ 253 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH---YAK 253 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc---hHH
Confidence 578999999974 222 2334445666788888764211 0 0011111111011347999985 2222 222
Q ss_pred HHHHHHhcccCCcEEEEEeccccCcCc----CCCCCCCChhHHHHHhh
Q 025071 185 FVGEIERTLKPAGVCVLHVALSRRADK----YSANDLFSVKPLVKLFR 228 (258)
Q Consensus 185 ~l~Ei~RVLKPGG~lii~v~~~~~~~~----y~~~~~~s~~~l~~lf~ 228 (258)
.+.++.+..+.+|.+++-.+.++..+. .+.-.+|+++.+.+..+
T Consensus 254 ~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~ 301 (311)
T cd05213 254 IVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVE 301 (311)
T ss_pred HHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHH
Confidence 333443333335677776665543321 12233577787777665
No 385
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.44 E-value=43 Score=30.49 Aligned_cols=32 Identities=22% Similarity=0.049 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCHHHHHHH----hcCCCcEEEEeC
Q 025071 114 FNESKALSIGARVGQEVAALK----LVGVSDSIGIDL 146 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~----~~g~~~v~GvD~ 146 (258)
.....||-.||-.|.+..+|+ +.|+ .|++...
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR 40 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATAR 40 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEcc
Confidence 356789999999999877665 4576 6777664
No 386
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.90 E-value=23 Score=32.07 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=46.8
Q ss_pred EEEEECCCC--CHHHHHHHhcCCCcEEEEeCCCCCCc-------------eeeec---------------CCCCCCCCCC
Q 025071 118 KALSIGARV--GQEVAALKLVGVSDSIGIDLVPRPPL-------------VIKGD---------------FHAQPFDNGT 167 (258)
Q Consensus 118 ~VLDIGcGt--G~~~~~L~~~g~~~v~GvD~s~~~~~-------------~~~aD---------------a~~LPf~d~S 167 (258)
+|.=||+|. +..+..|++.|. +|+.+|.++.... ...+. ..++.-.-+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 577888873 224455666775 7999997642110 00000 0111101134
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-|+|+.+..+...-...+++++.+.++||..++...+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 6888875433322234567889999999876655433
No 387
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=43.28 E-value=41 Score=33.52 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=57.9
Q ss_pred CCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCC---------------CceeeecCCCCCC---------CCCCee
Q 025071 115 NESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRP---------------PLVIKGDFHAQPF---------DNGTFD 169 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~---------------~~~~~aDa~~LPf---------~d~SFD 169 (258)
.+.++|.||-|.|.....+.. .+...++++++.+.. ..+..+|. ++| ++..||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dG--l~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADG--LDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhc--hHHHHHHhhccccccCCc
Confidence 457899999999998877753 455678888876431 11222221 222 678999
Q ss_pred EEEec----cccc-cCCh------HHHHHHHHhcccCCcEEEEEec
Q 025071 170 FEFSN----VFDH-ALYP------WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 170 ~V~s~----~l~h-~~~p------~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+++.. . .| +..| +.++.-+.-+|.|-|.+++...
T Consensus 373 vl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 373 VLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred EEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence 99873 3 33 2222 3466788999999999988743
No 388
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=42.98 E-value=70 Score=32.84 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCHHHH---------HHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQEVA---------ALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~---------~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
+..+|| +.||+|.-+- .|++.|.. ..+.+.+..+.|-.++.+|+|++.
T Consensus 505 k~mKIL-vaCGsGiGTStmva~kIkk~Lke~GI~-----------veV~~~~Vsev~s~~~~aDIIVtt 561 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMMMKMKIKKYLDKRGIP-----------IIMDSCAVNDYKGKLETIDIIVCS 561 (602)
T ss_pred cccEEE-EECCCCchHHHHHHHHHHHHHHHcCCC-----------eEEEEechHhCcccCCCCCEEEEc
Confidence 345666 6778777543 23344541 123455666666666678999984
No 389
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=42.96 E-value=1.3e+02 Score=27.71 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred CCCEEEEECCCCCH--HHHHHHhcCCCcEEEEeCCCCCCc------eeeecCCCCCCCCCCeeEEEeccccccCChHHHH
Q 025071 115 NESKALSIGARVGQ--EVAALKLVGVSDSIGIDLVPRPPL------VIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFV 186 (258)
Q Consensus 115 ~~~~VLDIGcGtG~--~~~~L~~~g~~~v~GvD~s~~~~~------~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~~l 186 (258)
.+.+|+=+|+|.-. .+..|...|. +|+.+|.++.... ....+..+++-.-+.+|+|++.+ . +...-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~-p----~~~i~ 224 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTI-P----ALVLT 224 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECC-C----hhhhh
Confidence 57899999998422 1234455675 8999997642110 00011111111124689999852 1 11233
Q ss_pred HHHHhcccCCcEEEEEe
Q 025071 187 GEIERTLKPAGVCVLHV 203 (258)
Q Consensus 187 ~Ei~RVLKPGG~lii~v 203 (258)
+|+.+.++||+.++-..
T Consensus 225 ~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 225 KEVLSKMPPEALIIDLA 241 (296)
T ss_pred HHHHHcCCCCcEEEEEc
Confidence 67788899988776543
No 390
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=42.77 E-value=43 Score=33.32 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=50.5
Q ss_pred HHHHHh-cCCCCCCEEEEECCCC-CHH-HHHHHhcCCCcEEEEeCCCCCCce-eeecCCCCCCC--CCCeeEEEecc-cc
Q 025071 105 QDLKQR-HFLFNESKALSIGARV-GQE-VAALKLVGVSDSIGIDLVPRPPLV-IKGDFHAQPFD--NGTFDFEFSNV-FD 177 (258)
Q Consensus 105 ~~L~~~-~~l~~~~~VLDIGcGt-G~~-~~~L~~~g~~~v~GvD~s~~~~~~-~~aDa~~LPf~--d~SFD~V~s~~-l~ 177 (258)
+.++.. +..-.+.+|+=+|+|. |.. +..+...|. +|+.+|.++..... ....+...+++ -...|+|++.. -.
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~ 320 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNK 320 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcc
Confidence 444433 2334688999999995 332 223344675 79899876432210 00001111221 14679998742 12
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+. =.|....+|||++++-.
T Consensus 321 ~iI-----~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 321 DII-----TLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ccc-----CHHHHhccCCCcEEEEc
Confidence 221 15788899999988764
No 391
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=42.27 E-value=13 Score=31.30 Aligned_cols=102 Identities=22% Similarity=0.268 Sum_probs=53.6
Q ss_pred CCCEEEEECCCC-CHH-HHHHHhcCCCcEEEEeCCCCCCc-eeeecCCCCCCCC--CCeeEEEec-----cccccCChHH
Q 025071 115 NESKALSIGARV-GQE-VAALKLVGVSDSIGIDLVPRPPL-VIKGDFHAQPFDN--GTFDFEFSN-----VFDHALYPWK 184 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~-~~~L~~~g~~~v~GvD~s~~~~~-~~~aDa~~LPf~d--~SFD~V~s~-----~l~h~~~p~~ 184 (258)
.+.+|.=||+|. |.. +..++..|. +|++.|.+..+.. .........++++ ...|+|+.. .-+|+.+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~--- 110 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLIN--- 110 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBS---
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeee---
Confidence 578999999873 333 233445676 8999998653211 0000000011211 457888773 1234443
Q ss_pred HHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCce
Q 025071 185 FVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESEL 232 (258)
Q Consensus 185 ~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~ 232 (258)
+|....+|||.+++= + .| ..+.+.+.+.+.+++..+
T Consensus 111 --~~~l~~mk~ga~lvN-~--aR-------G~~vde~aL~~aL~~g~i 146 (178)
T PF02826_consen 111 --AEFLAKMKPGAVLVN-V--AR-------GELVDEDALLDALESGKI 146 (178)
T ss_dssp --HHHHHTSTTTEEEEE-S--SS-------GGGB-HHHHHHHHHTTSE
T ss_pred --eeeeeccccceEEEe-c--cc-------hhhhhhhHHHHHHhhccC
Confidence 567778898875543 2 21 234456777777775543
No 392
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=41.55 E-value=99 Score=28.59 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCC---------Cc-eeee-cCCCCCCCCCCeeEEEeccccc
Q 025071 112 FLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRP---------PL-VIKG-DFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~---------~~-~~~a-Da~~LPf~d~SFD~V~s~~l~h 178 (258)
...++.+||-.|+| .|..+..+++ .|. +++.++.++.. .. ++.. +...+.-....+|+|+..+ .
T Consensus 177 ~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~-g- 253 (357)
T PLN02514 177 LKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV-P- 253 (357)
T ss_pred cCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC-C-
Confidence 34577888888764 2333334444 565 57777654211 00 1100 0000000012478887631 1
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+.++.+.|++||+++..
T Consensus 254 ---~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 254 ---VFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred ---chHHHHHHHHHhccCCEEEEE
Confidence 123567888999999998775
No 393
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=41.33 E-value=1.8e+02 Score=27.17 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=47.8
Q ss_pred CCCCCCEEEEECCCCCHHHH---HHH-hcCCCcEEEEeCCCCC--------C-ceeeec----------CCCCCCCCCCe
Q 025071 112 FLFNESKALSIGARVGQEVA---ALK-LVGVSDSIGIDLVPRP--------P-LVIKGD----------FHAQPFDNGTF 168 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~---~L~-~~g~~~v~GvD~s~~~--------~-~~~~aD----------a~~LPf~d~SF 168 (258)
.+.++.+||=.||| .... .++ ..|...|++++.++.. . .++... ..++. +...+
T Consensus 200 ~~~~g~~VlV~g~g--~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~-~g~gv 276 (384)
T cd08265 200 GFRPGAYVVVYGAG--PIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVT-KGWGA 276 (384)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhc-CCCCC
Confidence 45677888888764 4433 333 3575468888754311 0 111100 00111 23458
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+|+... -.+...+.++.+.|+++|+++..
T Consensus 277 Dvvld~~----g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 277 DIQVEAA----GAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CEEEECC----CCcHHHHHHHHHHHHcCCEEEEE
Confidence 9888641 12345678999999999998865
No 394
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=40.73 E-value=1.2e+02 Score=27.10 Aligned_cols=83 Identities=18% Similarity=0.119 Sum_probs=47.2
Q ss_pred hcCCCCCCEEEEECCCCCHHHHH---HH-hcCCCcEEEEeCCCCCCce-------eeecCCCCCCCCCCeeEEEeccccc
Q 025071 110 RHFLFNESKALSIGARVGQEVAA---LK-LVGVSDSIGIDLVPRPPLV-------IKGDFHAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGtG~~~~~---L~-~~g~~~v~GvD~s~~~~~~-------~~aDa~~LPf~d~SFD~V~s~~l~h 178 (258)
...+.++.+||=.|+ |....+ ++ ..|. ++++++.++..... ...+... ....+.+|+++...
T Consensus 150 ~~~~~~g~~vlV~g~--g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~vid~~--- 222 (319)
T cd08242 150 QVPITPGDKVAVLGD--GKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEA-ESEGGGFDVVVEAT--- 222 (319)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc-cccCCCCCEEEECC---
Confidence 345667889998875 444433 33 3575 58877754211000 0111111 12345689888741
Q ss_pred cCChHHHHHHHHhcccCCcEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
.....+.++.+.|+++|.++.
T Consensus 223 --g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 223 --GSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred --CChHHHHHHHHHhhcCCEEEE
Confidence 113356788899999999886
No 395
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=39.97 E-value=1.1e+02 Score=28.38 Aligned_cols=91 Identities=21% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHHhcCCCCCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCC----CC--CCCCCCe
Q 025071 107 LKQRHFLFNESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFH----AQ--PFDNGTF 168 (258)
Q Consensus 107 L~~~~~l~~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~----~L--Pf~d~SF 168 (258)
+.....++++.+||=.|+. .|..+..|++ .|. .++++--+.... .++.-..+ .+ .....-+
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 3334457779999999954 4456666665 565 555555432110 11110000 00 0122368
Q ss_pred eEEEeccccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 169 DFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 169 D~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
|+|+..+ -...+.+..+.|++||+++..-.
T Consensus 213 Dvv~D~v------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 213 DVVLDTV------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred eEEEECC------CHHHHHHHHHHhccCCEEEEEec
Confidence 9998742 13445778999999999888644
No 396
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.54 E-value=37 Score=30.94 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=51.0
Q ss_pred CEEEEECCCC--CHHHHHHHhcCCCcEEEEeCCCCCC-------------ce------------------eeecCCCCCC
Q 025071 117 SKALSIGARV--GQEVAALKLVGVSDSIGIDLVPRPP-------------LV------------------IKGDFHAQPF 163 (258)
Q Consensus 117 ~~VLDIGcGt--G~~~~~L~~~g~~~v~GvD~s~~~~-------------~~------------------~~aDa~~LPf 163 (258)
.+|-=||+|+ +.++..++..|+ +|+..|.++... .+ ...|.+. .
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~--~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD--F 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH--h
Confidence 3688899984 234555667786 799999764210 00 1112111 1
Q ss_pred CCCCeeEEEeccccccCChHHHHHHHHhcc-cCCcEEEEEe
Q 025071 164 DNGTFDFEFSNVFDHALYPWKFVGEIERTL-KPAGVCVLHV 203 (258)
Q Consensus 164 ~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVL-KPGG~lii~v 203 (258)
+..|+|+-++.+...-....++++.+++ +||..++-.+
T Consensus 83 --~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 83 --ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred --CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 3568998876666555567788999999 7776665543
No 397
>PLN02702 L-idonate 5-dehydrogenase
Probab=39.46 E-value=2.2e+02 Score=26.08 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=47.9
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHH-hcCCCcEEEEeCCCCCC---------ceeeecCCCCCC----------CCCCee
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALK-LVGVSDSIGIDLVPRPP---------LVIKGDFHAQPF----------DNGTFD 169 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~-~~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf----------~d~SFD 169 (258)
..+.++.+||=+|+| .|..+..++ ..|...++++|.++... ....-+.....+ ....+|
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 256 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGID 256 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCC
Confidence 345677888888764 233333343 35765678887643210 011101010011 123588
Q ss_pred EEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 170 FEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 170 ~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+|+..+- ....+.++.+.|+++|+++..
T Consensus 257 ~vid~~g-----~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 257 VSFDCVG-----FNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred EEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 8887421 124578999999999997654
No 398
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=39.12 E-value=54 Score=31.31 Aligned_cols=86 Identities=20% Similarity=0.147 Sum_probs=54.8
Q ss_pred CCEEEEECCCC-CHHHHHHHhcCCCcEEEEeCCCCC-----------CceeeecCCCCCCCCCCeeEEEecc-ccccCCh
Q 025071 116 ESKALSIGARV-GQEVAALKLVGVSDSIGIDLVPRP-----------PLVIKGDFHAQPFDNGTFDFEFSNV-FDHALYP 182 (258)
Q Consensus 116 ~~~VLDIGcGt-G~~~~~L~~~g~~~v~GvD~s~~~-----------~~~~~aDa~~LPf~d~SFD~V~s~~-l~h~~~p 182 (258)
+++|.-+|-|. |..+..++--..++|+-+|++..+ ......+..++--.=...|+|+..+ +.-...|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaP 247 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAP 247 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCc
Confidence 45788888884 566666654323589999987321 1112222222222234679999874 4556678
Q ss_pred HHHHHHHHhcccCCcEEEE
Q 025071 183 WKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii 201 (258)
....+|+..-+|||+.++=
T Consensus 248 kLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 248 KLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred eehhHHHHHhcCCCcEEEE
Confidence 8888999999999998764
No 399
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=38.39 E-value=44 Score=29.69 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCHHHHHHHh----c-----CCCcEEEEeCCCC
Q 025071 116 ESKALSIGARVGQEVAALKL----V-----GVSDSIGIDLVPR 149 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~----~-----g~~~v~GvD~s~~ 149 (258)
.-+|+++|+|+|.++..+.+ . ...+++-||.|+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY 61 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence 36899999999998765432 1 1125778888753
No 400
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=38.18 E-value=2e+02 Score=24.87 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=47.8
Q ss_pred cCCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeecCCCCCC--------CCCCeeE
Q 025071 111 HFLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGDFHAQPF--------DNGTFDF 170 (258)
Q Consensus 111 ~~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aDa~~LPf--------~d~SFD~ 170 (258)
..+.++.+||=.|+ +.|..+..+++ .|. .+++++.++... .+.. ....++ ....+|+
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~d~ 208 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVIN--YRDEDFVERVREITGGRGVDV 208 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEe--CCchhHHHHHHHHcCCCCeeE
Confidence 44567889999995 24445444544 564 677777543110 1111 111111 2346899
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
|+... . ...+.+..+.|+++|.++..
T Consensus 209 vl~~~-~-----~~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 209 VYDGV-G-----KDTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred EEECC-C-----cHhHHHHHHhhccCcEEEEE
Confidence 88742 1 13457889999999998765
No 401
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=36.95 E-value=2.3e+02 Score=25.67 Aligned_cols=86 Identities=13% Similarity=-0.034 Sum_probs=45.2
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHH-hcCCCcEEEEeCCCCCCc-------eeeecCCCCCC--------CCCCeeEEEec
Q 025071 112 FLFNESKALSIGAR-VGQEVAALK-LVGVSDSIGIDLVPRPPL-------VIKGDFHAQPF--------DNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~-~~g~~~v~GvD~s~~~~~-------~~~aDa~~LPf--------~d~SFD~V~s~ 174 (258)
.+.++.+||=.|+| .|..+..++ ..|...++++|.++.... -..-+..+..+ +...+|+++..
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~ 250 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEA 250 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 45567777765553 222233333 357656778875432100 00111111111 12348988864
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+- . ...+.++.+.|+++|+++..
T Consensus 251 ~g----~-~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 251 TG----H-PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred CC----C-hHHHHHHHHHhhcCCEEEEE
Confidence 21 1 23568899999999998775
No 402
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=36.88 E-value=61 Score=29.29 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=46.3
Q ss_pred CEEEEECCCC-C-HHHHHHHhcCCCcEEEEeCCCCCCc------------e----eeecC---------CCC----CC-C
Q 025071 117 SKALSIGARV-G-QEVAALKLVGVSDSIGIDLVPRPPL------------V----IKGDF---------HAQ----PF-D 164 (258)
Q Consensus 117 ~~VLDIGcGt-G-~~~~~L~~~g~~~v~GvD~s~~~~~------------~----~~aDa---------~~L----Pf-~ 164 (258)
.+|.=||||+ | .++..++..|. +|+.+|.++.... + ..+.. ..+ +. .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHH
Confidence 3678889984 2 24455666776 7999997642110 0 00000 001 11 1
Q ss_pred CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEE
Q 025071 165 NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
-...|+|+.++.+.......+++++.+.++|+..++
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 134688887654443334567788999988876553
No 403
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=36.24 E-value=2.1e+02 Score=25.87 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=46.5
Q ss_pred cCCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCC-CC-------CCCCCeeEEEe
Q 025071 111 HFLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHA-QP-------FDNGTFDFEFS 173 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~-LP-------f~d~SFD~V~s 173 (258)
..+.++.+||=.||| .|..+..+++ .|. +|++++.+..... -...+... .. +..+.+|+|+.
T Consensus 161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~ 239 (345)
T cd08260 161 ARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVD 239 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEE
Confidence 345677889999864 2223333333 564 6777765432100 00111111 11 11126898887
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.. . -...+.+..|.|+++|.++..
T Consensus 240 ~~-g----~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 240 AL-G----IPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred cC-C----CHHHHHHHHHHhhcCCEEEEe
Confidence 41 1 134567899999999988764
No 404
>PRK08223 hypothetical protein; Validated
Probab=36.23 E-value=63 Score=30.01 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=25.7
Q ss_pred CCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeC
Q 025071 115 NESKALSIGARV-GQ-EVAALKLVGVSDSIGIDL 146 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~ 146 (258)
...+||-+|||. |. .+.+|+..|+.+++-+|.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 457899999994 44 467888999888988885
No 405
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=36.23 E-value=1.3e+02 Score=26.51 Aligned_cols=85 Identities=16% Similarity=0.063 Sum_probs=47.2
Q ss_pred cCCCCCCEEEEECCCC--CHHHHHHH-hcCCCcEEEEeCCCCCCc-------eeeecCCCCC--------CCCCCeeEEE
Q 025071 111 HFLFNESKALSIGARV--GQEVAALK-LVGVSDSIGIDLVPRPPL-------VIKGDFHAQP--------FDNGTFDFEF 172 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt--G~~~~~L~-~~g~~~v~GvD~s~~~~~-------~~~aDa~~LP--------f~d~SFD~V~ 172 (258)
..+.++.+||-.|++. |..+..++ ..|. +++.++.++.... -...+...-. .....+|.++
T Consensus 162 ~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 240 (342)
T cd08266 162 ARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVV 240 (342)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEE
Confidence 3456778899888764 44444333 3564 6777775431100 0001111101 1124688888
Q ss_pred eccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 173 SNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 173 s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.++ ....+.++.+.|+++|.++..
T Consensus 241 ~~~------g~~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 241 EHV------GAATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred ECC------cHHHHHHHHHHhhcCCEEEEE
Confidence 742 123457888999999988765
No 406
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=36.18 E-value=55 Score=30.67 Aligned_cols=84 Identities=13% Similarity=0.015 Sum_probs=44.1
Q ss_pred CCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeCCCCCCc-eeeecCCCCCCCCCCeeEEEeccccccCC-hHHHHHHHH
Q 025071 115 NESKALSIGARV-GQ-EVAALKLVGVSDSIGIDLVPRPPL-VIKGDFHAQPFDNGTFDFEFSNVFDHALY-PWKFVGEIE 190 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~s~~~~~-~~~aDa~~LPf~d~SFD~V~s~~l~h~~~-p~~~l~Ei~ 190 (258)
.+.+|.=||+|. |. .+..|+..|. +|++.|.++.... .... ..++.-.-...|+|+.. +..-.. ...+-+++.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~~~~-~~~l~ell~~aDiVil~-lP~t~~t~~li~~~~l 221 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDFLTY-KDSVKEAIKDADIISLH-VPANKESYHLFDKAMF 221 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhhhhc-cCCHHHHHhcCCEEEEe-CCCcHHHHHHHhHHHH
Confidence 466899999986 33 3455566775 7999997643211 0000 00111111345777663 111110 122346788
Q ss_pred hcccCCcEEEE
Q 025071 191 RTLKPAGVCVL 201 (258)
Q Consensus 191 RVLKPGG~lii 201 (258)
..+|||.+++-
T Consensus 222 ~~mk~gavlIN 232 (330)
T PRK12480 222 DHVKKGAILVN 232 (330)
T ss_pred hcCCCCcEEEE
Confidence 88999875544
No 407
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=34.62 E-value=27 Score=29.05 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCeeEEEec--cccc-----cCChH---HHHHHHHhcccCCcEEEEEec
Q 025071 166 GTFDFEFSN--VFDH-----ALYPW---KFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 166 ~SFD~V~s~--~l~h-----~~~p~---~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+.+|+|+.| .|.. ...|+ .+++.+.+.|+|||++++.+-
T Consensus 45 ~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 45 GPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp --EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEe
Confidence 589988875 3322 11333 578999999999999988753
No 408
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=34.46 E-value=1e+02 Score=27.73 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=45.3
Q ss_pred CCCCCEEEEECCCCCHHHHH---HH-hcCCCcEEEEeCCCCCCc------eeeecCCCCC--------CCCCCeeEEEec
Q 025071 113 LFNESKALSIGARVGQEVAA---LK-LVGVSDSIGIDLVPRPPL------VIKGDFHAQP--------FDNGTFDFEFSN 174 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~---L~-~~g~~~v~GvD~s~~~~~------~~~aDa~~LP--------f~d~SFD~V~s~ 174 (258)
+.++.+||=.|+ |..+.+ ++ ..|...+++++.++.... ....+..... .+.+.+|+|+..
T Consensus 165 ~~~~~~vlI~g~--g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~ 242 (344)
T cd08284 165 VRPGDTVAVIGC--GPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEA 242 (344)
T ss_pred CccCCEEEEECC--cHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 456788888775 444433 33 356546888764321100 0001111111 123468888864
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+- . ...+.+..+.|+++|+++..
T Consensus 243 ~~----~-~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 243 VG----G-AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CC----C-HHHHHHHHHhcccCCEEEEE
Confidence 21 1 23578999999999997765
No 409
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=34.22 E-value=2.6e+02 Score=26.10 Aligned_cols=91 Identities=20% Similarity=0.295 Sum_probs=55.1
Q ss_pred CCCEEEEECCCCCHHHHHH----HhcCC-CcEEEEeCCC-------------CCC---ceeeecC----CCCCCCCCCee
Q 025071 115 NESKALSIGARVGQEVAAL----KLVGV-SDSIGIDLVP-------------RPP---LVIKGDF----HAQPFDNGTFD 169 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L----~~~g~-~~v~GvD~s~-------------~~~---~~~~aDa----~~LPf~d~SFD 169 (258)
.+...+|+|.|+..-++.| +..|. ...+.+|++. ++. .-+++|. ..+| .-++==
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 4678999999998865544 44453 4578899863 222 1233443 2445 222222
Q ss_pred EEEec-cccccC--ChHHHHHHHHhcccCCcEEEEEeccc
Q 025071 170 FEFSN-VFDHAL--YPWKFVGEIERTLKPAGVCVLHVALS 206 (258)
Q Consensus 170 ~V~s~-~l~h~~--~p~~~l~Ei~RVLKPGG~lii~v~~~ 206 (258)
+++.+ ++-+.. +-..++..+..+|+||-.+.+-+...
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 33333 555443 12357799999999999999977543
No 410
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=34.01 E-value=2.1e+02 Score=24.22 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=35.3
Q ss_pred HHHhcCCCcEEEEeCCCCC----C---ceeeecCCCCCC-CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 132 ALKLVGVSDSIGIDLVPRP----P---LVIKGDFHAQPF-DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 132 ~L~~~g~~~v~GvD~s~~~----~---~~~~aDa~~LPf-~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
++...|+ .|.+.+.-... . .+..+|--.-|+ +.+..|++++. ++..+ .....-|||||.+++-
T Consensus 25 a~~~~G~-~v~~~~~~g~~~RGG~~~s~vRi~~~~~~~~~~~~~~D~lva~------d~~~~-~~~~~~l~~gg~ii~n 95 (197)
T PRK06274 25 AAMNEGF-HVRTAETLGMSQREGSVISHLRFGDEISSPLIPEGQADLLLAL------EPAEV-ARNLHFLKKGGKIIVN 95 (197)
T ss_pred HHHHcCC-CeEeccccCchhhCCeEEEEEEEcCccCCCccCCCCCCEEEEc------CHHHH-HHHHhhcCCCcEEEEE
Confidence 3345675 57666642111 1 233343223354 25789999983 34433 3455669999988875
No 411
>PRK06436 glycerate dehydrogenase; Provisional
Probab=33.83 E-value=84 Score=29.15 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=23.5
Q ss_pred CCCEEEEECCCC-CHH-HHHHHhcCCCcEEEEeCCC
Q 025071 115 NESKALSIGARV-GQE-VAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~-~~~L~~~g~~~v~GvD~s~ 148 (258)
.+.+|.=||+|. |.. +..++..|. +|++.|.+.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~ 155 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY 155 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 578899999984 653 444445675 799999753
No 412
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=33.81 E-value=40 Score=31.57 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=17.8
Q ss_pred HHHHHHHHhcccCCcEEEEEe
Q 025071 183 WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v 203 (258)
..++..+..+|||||+++++.
T Consensus 220 ~~~L~~~~~~L~~gGrl~VIS 240 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSIIS 240 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEEe
Confidence 467788999999999998874
No 413
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=33.58 E-value=45 Score=31.73 Aligned_cols=87 Identities=18% Similarity=0.114 Sum_probs=46.4
Q ss_pred CCCEEEEECCC-CCHHHH-HHHhcCCCcEEEEeCCCCCC--------ceeeecC---CCCCCCCCCeeEEEecc-ccccC
Q 025071 115 NESKALSIGAR-VGQEVA-ALKLVGVSDSIGIDLVPRPP--------LVIKGDF---HAQPFDNGTFDFEFSNV-FDHAL 180 (258)
Q Consensus 115 ~~~~VLDIGcG-tG~~~~-~L~~~g~~~v~GvD~s~~~~--------~~~~aDa---~~LPf~d~SFD~V~s~~-l~h~~ 180 (258)
++.+|+=+|+| .|..+. .+...|. +|+.+|.++... ..+..+. +.+.-.-..+|+|++.+ +....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 45679999988 333333 3345676 699999753210 0011110 11100013579999853 22222
Q ss_pred ChHHHHHHHHhcccCCcEEEEE
Q 025071 181 YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.|...-+|+.+.+|||++++-.
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEE
Confidence 2332336777889999877654
No 414
>PRK13243 glyoxylate reductase; Reviewed
Probab=33.56 E-value=52 Score=30.82 Aligned_cols=81 Identities=20% Similarity=0.138 Sum_probs=43.2
Q ss_pred CCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCC--CCCeeEEEecc-----ccccCChHHH
Q 025071 115 NESKALSIGARV-GQ-EVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFD--NGTFDFEFSNV-----FDHALYPWKF 185 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~--d~SFD~V~s~~-----l~h~~~p~~~ 185 (258)
.+.+|.=||+|. |. .+..+...|. +|++.|.++..............++ -..-|+|+... -.|+.+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~---- 223 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMIN---- 223 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccC----
Confidence 577999999985 54 3455566775 7999997543211000000000111 12457777631 122221
Q ss_pred HHHHHhcccCCcEEEE
Q 025071 186 VGEIERTLKPAGVCVL 201 (258)
Q Consensus 186 l~Ei~RVLKPGG~lii 201 (258)
+|....+|||.+++=
T Consensus 224 -~~~~~~mk~ga~lIN 238 (333)
T PRK13243 224 -EERLKLMKPTAILVN 238 (333)
T ss_pred -HHHHhcCCCCeEEEE
Confidence 466667888766554
No 415
>PLN02928 oxidoreductase family protein
Probab=33.55 E-value=59 Score=30.68 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCCEEEEECCCC-CHH-HHHHHhcCCCcEEEEeCC
Q 025071 115 NESKALSIGARV-GQE-VAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~-~~~L~~~g~~~v~GvD~s 147 (258)
.+.+|.=||.|. |.. +..+...|. +|++.|.+
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~ 191 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS 191 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 467999999985 654 444555675 89999975
No 416
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=31.83 E-value=1.3e+02 Score=28.38 Aligned_cols=83 Identities=17% Similarity=0.067 Sum_probs=44.6
Q ss_pred CCCCEEEEECCCC-CHHHHHHHh-cCCCcEEEEeCCCCC-C---------ceeee-cCCCCCCCCCCeeEEEeccccccC
Q 025071 114 FNESKALSIGARV-GQEVAALKL-VGVSDSIGIDLVPRP-P---------LVIKG-DFHAQPFDNGTFDFEFSNVFDHAL 180 (258)
Q Consensus 114 ~~~~~VLDIGcGt-G~~~~~L~~-~g~~~v~GvD~s~~~-~---------~~~~a-Da~~LPf~d~SFD~V~s~~l~h~~ 180 (258)
.++.+||-.|||. |..+..+++ .|. +|+++|.+... . .++.. +.+.+.-..+.+|+|+..+ .
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~-G--- 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV-S--- 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC-C---
Confidence 4678899888752 333334444 565 68888764321 0 01100 0000000002478888642 1
Q ss_pred ChHHHHHHHHhcccCCcEEEEE
Q 025071 181 YPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+.+..+.|++||.++..
T Consensus 252 -~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 252 -AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred -cHHHHHHHHHhhcCCCEEEEE
Confidence 123567888999999998765
No 417
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=31.81 E-value=1.9e+02 Score=27.09 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=23.4
Q ss_pred CEEEEECCCCCHH----HHHHHhc-CCCcEEEEeCCC
Q 025071 117 SKALSIGARVGQE----VAALKLV-GVSDSIGIDLVP 148 (258)
Q Consensus 117 ~~VLDIGcGtG~~----~~~L~~~-g~~~v~GvD~s~ 148 (258)
-..+-.|+|||.. +.+|++. +..+++++|...
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~ 206 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEG 206 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCC
Confidence 4578889999985 5677664 335799999764
No 418
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=31.36 E-value=99 Score=27.94 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=45.1
Q ss_pred CEEEEECCCC-C-HHHHHHHhcCCCcEEEEeCCCCCCc------------ee-eec---------CCCCCCC-----CCC
Q 025071 117 SKALSIGARV-G-QEVAALKLVGVSDSIGIDLVPRPPL------------VI-KGD---------FHAQPFD-----NGT 167 (258)
Q Consensus 117 ~~VLDIGcGt-G-~~~~~L~~~g~~~v~GvD~s~~~~~------------~~-~aD---------a~~LPf~-----d~S 167 (258)
.+|-=||+|. | .++..++..|. +|+..|.++.... +. .+. ...+-+. -+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence 4677888883 2 24455666775 7999997642210 00 000 0001111 123
Q ss_pred eeEEEeccccccCChHHHHHHHHhcccCCcEEE
Q 025071 168 FDFEFSNVFDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 168 FD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
-|+|+.++.+-......+++|+...++|+..++
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 578777543332233456788999999987654
No 419
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=31.35 E-value=74 Score=25.47 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=35.3
Q ss_pred CCCEEEEECCCCCH--HHHHHHhcCCCcEEEEeCCCCCC----------ceeeecCCCCCCCCCCeeEEEec
Q 025071 115 NESKALSIGARVGQ--EVAALKLVGVSDSIGIDLVPRPP----------LVIKGDFHAQPFDNGTFDFEFSN 174 (258)
Q Consensus 115 ~~~~VLDIGcGtG~--~~~~L~~~g~~~v~GvD~s~~~~----------~~~~aDa~~LPf~d~SFD~V~s~ 174 (258)
.+.+||=+|+|.-. .+.+|.+.|..+++-++.+.... .+...+.++++=.-+.+|+|+++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINA 82 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEe
Confidence 57899999997322 23466777887788887653210 12222333333123579999985
No 420
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=31.34 E-value=3.2e+02 Score=23.05 Aligned_cols=86 Identities=22% Similarity=0.238 Sum_probs=47.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHh--cCCCcEEEEeCCCC----CC-ceeeecCC---CCC--CCCCCeeEEEec-cccccC
Q 025071 114 FNESKALSIGARVGQEVAALKL--VGVSDSIGIDLVPR----PP-LVIKGDFH---AQP--FDNGTFDFEFSN-VFDHAL 180 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~~~~~L~~--~g~~~v~GvD~s~~----~~-~~~~aDa~---~LP--f~d~SFD~V~s~-~l~h~~ 180 (258)
.++.+|+.|||=+-.. .+.+ ....++.-.|.... .. .++--|.. .+| + .++||+|++. =+ +.
T Consensus 24 ~~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~~~~~~l-~~~~d~vv~DPPF--l~ 98 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYNEPEELPEEL-KGKFDVVVIDPPF--LS 98 (162)
T ss_pred CCCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHhcCCcceEECCCCChhhhhhhc-CCCceEEEECCCC--CC
Confidence 3568999999987443 4444 22246777776532 11 24443432 333 3 5799999985 11 11
Q ss_pred -Ch-HHHHHHHHhcccCCcEEEEEec
Q 025071 181 -YP-WKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 181 -~p-~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
+- .+...-+.-.+|+++.+++.++
T Consensus 99 ~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 99 EECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred HHHHHHHHHHHHHHhCccceEEEecH
Confidence 11 2233344444588888888654
No 421
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=30.76 E-value=2.4e+02 Score=26.30 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCCHH----HHHHHhc-CC-CcEEEEeCCCC---CCceeeecCCCCCCCC
Q 025071 96 KVRVFSRFFQDLKQ-RHFLFNESKALSIGARVGQE----VAALKLV-GV-SDSIGIDLVPR---PPLVIKGDFHAQPFDN 165 (258)
Q Consensus 96 ~~~~~~~~~~~L~~-~~~l~~~~~VLDIGcGtG~~----~~~L~~~-g~-~~v~GvD~s~~---~~~~~~aDa~~LPf~d 165 (258)
.+..|.++.+-+.. .-.++...+||-+|+|.-.- ..-|++. +. +-++-.|+.++ ....+.+|-+....+
T Consensus 41 NV~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~~- 119 (299)
T PF06460_consen 41 NVAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMPP- 119 (299)
T ss_dssp HHHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEES-
T ss_pred eHHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCCC-
Confidence 34445666665532 12356678999999986541 2234442 11 24666777543 233566777666554
Q ss_pred CCeeEEEeccc----ccc----CChH----HHHHHHHhcccCCcEEEEEe
Q 025071 166 GTFDFEFSNVF----DHA----LYPW----KFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 166 ~SFD~V~s~~l----~h~----~~p~----~~l~Ei~RVLKPGG~lii~v 203 (258)
..||+|+|..- .+. ...+ ....=|..-|+=||.+++=+
T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKi 169 (299)
T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKI 169 (299)
T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEe
Confidence 57999999521 111 0112 22344556788899888754
No 422
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=30.63 E-value=96 Score=29.96 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeCCC
Q 025071 114 FNESKALSIGARV-GQ-EVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 114 ~~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~s~ 148 (258)
..+.+|+-+|||. |. .+..|...|..+|+.++.+.
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 3568999999973 22 23445566766788888764
No 423
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=30.00 E-value=81 Score=24.07 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=23.1
Q ss_pred CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEecc
Q 025071 165 NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVAL 205 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~ 205 (258)
-+++|+++..+. +..+|. ++.-+.-.++=||.+++.+|.
T Consensus 9 G~e~~~~i~d~~-~g~~pn-al~a~~gtv~gGGllill~p~ 47 (92)
T PF08351_consen 9 GQEFDLLIFDAF-EGFDPN-ALAALAGTVRGGGLLILLLPP 47 (92)
T ss_dssp T--BSSEEEE-S-S---HH-HHHHHHTTB-TT-EEEEEES-
T ss_pred CCccCEEEEEcc-CCCCHH-HHHHHhcceecCeEEEEEcCC
Confidence 367898888543 333455 456888899999999999874
No 424
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=29.95 E-value=54 Score=34.00 Aligned_cols=32 Identities=28% Similarity=0.222 Sum_probs=26.5
Q ss_pred CCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeC
Q 025071 115 NESKALSIGARV-GQ-EVAALKLVGVSDSIGIDL 146 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~ 146 (258)
...+||=+|||+ |. .+.+|+..|+.+++-+|.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 357899999997 55 567888999989999994
No 425
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=29.10 E-value=53 Score=30.13 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCHHHHHH--HhcCCCcEEEEeCCC
Q 025071 115 NESKALSIGARVGQEVAAL--KLVGVSDSIGIDLVP 148 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L--~~~g~~~v~GvD~s~ 148 (258)
++-++||||.|.--+-..+ .++|+ +-+|.|+++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~ 112 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDS 112 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCH
Confidence 5568999999976654433 34676 688888754
No 426
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.71 E-value=54 Score=29.80 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=21.4
Q ss_pred CEEEEECCCCC--HHHHHHHhcCCCcEEEEeCCC
Q 025071 117 SKALSIGARVG--QEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 117 ~~VLDIGcGtG--~~~~~L~~~g~~~v~GvD~s~ 148 (258)
.+|.=||+|.- .++..|++.|. +|+.+|.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 46888899842 24455666775 799999754
No 427
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=28.54 E-value=1.9e+02 Score=28.02 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=37.4
Q ss_pred CCCccHHHHHHHHHhcccChh---hHhhhCchhHHHHHHHHHHHHHHHHH--------hcCCCCCCEEEEECCCCCHHHH
Q 025071 63 PGYASYETYIQHQLNKTLNPK---LRAVWTTRDWERKVRVFSRFFQDLKQ--------RHFLFNESKALSIGARVGQEVA 131 (258)
Q Consensus 63 ~~f~~y~~~l~~~l~~~l~~~---l~~~W~~~~w~~~~~~~~~~~~~L~~--------~~~l~~~~~VLDIGcGtG~~~~ 131 (258)
+++-++.+|++..+...-..- -..+=+..|+.+++.. +++|-.+++ +...+..-.++++|.|+|.++.
T Consensus 15 ~g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApel-s~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~ 93 (370)
T COG1565 15 GGPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPEL-SQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLAS 93 (370)
T ss_pred CCCccHHHHHHHHHcCCCCcccccchhccccCCeeechhH-HHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHH
Confidence 677788888888875421111 1112222344444322 233333222 2223345689999999999865
Q ss_pred HH
Q 025071 132 AL 133 (258)
Q Consensus 132 ~L 133 (258)
-+
T Consensus 94 Di 95 (370)
T COG1565 94 DI 95 (370)
T ss_pred HH
Confidence 43
No 428
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=28.48 E-value=59 Score=25.93 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=22.4
Q ss_pred EEEEECCC-CCH-HHHHHHhcCCCcEEEEeCC
Q 025071 118 KALSIGAR-VGQ-EVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 118 ~VLDIGcG-tG~-~~~~L~~~g~~~v~GvD~s 147 (258)
+|+=+||| .|. .+..|...|..+++-+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 47889998 444 3566778888789999853
No 429
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=28.46 E-value=1.6e+02 Score=28.38 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCCCCE--EEEECCCCCHHHHHHHh--cCCCcEEEEeC
Q 025071 100 FSRFFQDLKQRHFLFNESK--ALSIGARVGQEVAALKL--VGVSDSIGIDL 146 (258)
Q Consensus 100 ~~~~~~~L~~~~~l~~~~~--VLDIGcGtG~~~~~L~~--~g~~~v~GvD~ 146 (258)
|-.++.+|+..+...++.. -+|||+|+--+-..+.. .++ .-+|+|+
T Consensus 85 YihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~-~f~~tei 134 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNW-YFLATEI 134 (419)
T ss_pred hHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccc-eeeeeec
Confidence 4455667776554333333 48999998765544432 233 3555554
No 430
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=28.30 E-value=93 Score=29.48 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEC-CC-CCHHHHHHHhc---CCCcEEEEeCCCCCC----------------ceeeecCCC-CCC------
Q 025071 112 FLFNESKALSIG-AR-VGQEVAALKLV---GVSDSIGIDLVPRPP----------------LVIKGDFHA-QPF------ 163 (258)
Q Consensus 112 ~l~~~~~VLDIG-cG-tG~~~~~L~~~---g~~~v~GvD~s~~~~----------------~~~~aDa~~-LPf------ 163 (258)
.+.++.+||=+| || .|..+..+++. |...|+++|.++... .....+..+ -.+
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHH
Confidence 456778999997 34 45555555553 334689988753211 001111111 000
Q ss_pred --CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 164 --DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 164 --~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....||+|+..+ - . ...+.+..+.++++|.+++.
T Consensus 252 ~t~g~g~D~vid~~-g---~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 252 LTGGQGFDDVFVFV-P---V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HhCCCCCCEEEEcC-C---C-HHHHHHHHHHhccCCeEEEE
Confidence 223588887631 0 1 34568889999999876654
No 431
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=28.29 E-value=2.5e+02 Score=25.98 Aligned_cols=83 Identities=22% Similarity=0.137 Sum_probs=48.0
Q ss_pred EEEEECCCC--CHHHHHHHhcCCCcEEEEeCCCC------CCceeeecCC---------CCCCCCCCeeEEEeccccccC
Q 025071 118 KALSIGARV--GQEVAALKLVGVSDSIGIDLVPR------PPLVIKGDFH---------AQPFDNGTFDFEFSNVFDHAL 180 (258)
Q Consensus 118 ~VLDIGcGt--G~~~~~L~~~g~~~v~GvD~s~~------~~~~~~aDa~---------~LPf~d~SFD~V~s~~l~h~~ 180 (258)
+|+=+|||. |.++..|++.| .+|+.+-.++. ....+..... .-+-.-..+|+|+..+ ...
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v--Ka~ 78 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV--KAY 78 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe--ccc
Confidence 688889983 34566778888 56665554331 0111111111 1111224789998741 112
Q ss_pred ChHHHHHHHHhcccCCcEEEEEe
Q 025071 181 YPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 181 ~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
+-+.+++.+...++|.-.+++.-
T Consensus 79 q~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 79 QLEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred cHHHHHHHhhhcCCCCcEEEEEe
Confidence 45678899999999988766653
No 432
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=28.09 E-value=59 Score=30.63 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCcEEEEEe
Q 025071 183 WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v 203 (258)
+.++..+.++|||||+++++.
T Consensus 224 ~~~L~~a~~~L~~gGRl~VIs 244 (314)
T COG0275 224 EEALEAALDLLKPGGRLAVIS 244 (314)
T ss_pred HHHHHHHHHhhCCCcEEEEEE
No 433
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=27.98 E-value=2.4e+02 Score=23.59 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=22.3
Q ss_pred CCCCCCeeEEEeccccccCChHHHHH--HHHhcccCCcEEEEE
Q 025071 162 PFDNGTFDFEFSNVFDHALYPWKFVG--EIERTLKPAGVCVLH 202 (258)
Q Consensus 162 Pf~d~SFD~V~s~~l~h~~~p~~~l~--Ei~RVLKPGG~lii~ 202 (258)
+.+-+..|++++- ++. ++. +..+-|||||.+++-
T Consensus 61 ~s~~~~~D~lva~------~~~-~~~~~~~~~~l~~gg~ii~d 96 (177)
T TIGR02175 61 HSQIYEPDYVVVL------DPT-LLKTVNVTAGLKEDGILIVN 96 (177)
T ss_pred CCccCCCCEEEEc------CHH-HhCccchhhCcCCCeEEEEE
Confidence 4455788999983 111 222 255679999999875
No 434
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=27.97 E-value=1.3e+02 Score=29.02 Aligned_cols=35 Identities=23% Similarity=0.105 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCH-H-HHHHHhcCCCcEEEEeCCC
Q 025071 114 FNESKALSIGARVGQ-E-VAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 114 ~~~~~VLDIGcGtG~-~-~~~L~~~g~~~v~GvD~s~ 148 (258)
.++.+|+-+|||.=. . +..|...|..+++.++.++
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 356899999997422 2 2345556766788888764
No 435
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=27.93 E-value=3.2e+02 Score=23.80 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=45.8
Q ss_pred CCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCCCc--------eeeecCCCCCCCCCCeeEEEeccccccCChH
Q 025071 115 NESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRPPL--------VIKGDFHAQPFDNGTFDFEFSNVFDHALYPW 183 (258)
Q Consensus 115 ~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~~~--------~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~ 183 (258)
++..||=.|++ .|..+..+++ .|. ++++++.++.... ...-+.+. +.++.+|+++..+ . .
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~vl~~~-g-----~ 202 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVGGSE--LSGAPVDLVVDSV-G-----G 202 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecccc--ccCCCceEEEECC-C-----c
Confidence 47889988884 3444444443 565 6888875432110 00001111 2335689998742 1 1
Q ss_pred HHHHHHHhcccCCcEEEEE
Q 025071 184 KFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 184 ~~l~Ei~RVLKPGG~lii~ 202 (258)
..+.+..+.|+++|+++..
T Consensus 203 ~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 203 PQLARALELLAPGGTVVSV 221 (305)
T ss_pred HHHHHHHHHhcCCCEEEEE
Confidence 2468899999999998765
No 436
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=27.68 E-value=59 Score=30.27 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=17.8
Q ss_pred HHHHHHHHhcccCCcEEEEEe
Q 025071 183 WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v 203 (258)
..++..+..+|||||+++++.
T Consensus 216 ~~~L~~~~~~L~~gGrl~vis 236 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVIS 236 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEEe
Confidence 467788999999999998874
No 437
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=27.48 E-value=1.6e+02 Score=28.32 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=22.5
Q ss_pred CEEEEECCCCCH--HHHHHHhcCCCcEEEEeCCC
Q 025071 117 SKALSIGARVGQ--EVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 117 ~~VLDIGcGtG~--~~~~L~~~g~~~v~GvD~s~ 148 (258)
.+|-=||.|.-. .+..|++.|. +|+|+|.++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence 467888888543 3455677885 799999864
No 438
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=27.42 E-value=3.4e+02 Score=24.74 Aligned_cols=81 Identities=12% Similarity=-0.030 Sum_probs=47.5
Q ss_pred CEEEEECCCC--CHHHHHHHhcCCCcEEEEeCCCCC--------CceeeecC--CCCC------CCCCCeeEEEec--cc
Q 025071 117 SKALSIGARV--GQEVAALKLVGVSDSIGIDLVPRP--------PLVIKGDF--HAQP------FDNGTFDFEFSN--VF 176 (258)
Q Consensus 117 ~~VLDIGcGt--G~~~~~L~~~g~~~v~GvD~s~~~--------~~~~~aDa--~~LP------f~d~SFD~V~s~--~l 176 (258)
.+|+=+|||. |.++.+|++.|. +|+-++..+.. ...+..+. ...+ -+.+.||+|+.. +.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 4788999984 335667777775 68888864211 11111111 1111 112479988874 22
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-..+++.+...+.|+..++..
T Consensus 82 ----~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 82 ----DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred ----hHHHHHHHHHhhCCCCCEEEEE
Confidence 2456678888889888866554
No 439
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=27.34 E-value=2.6e+02 Score=25.25 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=45.9
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHH-hcCCCcEEEEeCCCCCC---------ceeeecCCCCC--C-CCCCeeEEEecccc
Q 025071 112 FLFNESKALSIGAR-VGQEVAALK-LVGVSDSIGIDLVPRPP---------LVIKGDFHAQP--F-DNGTFDFEFSNVFD 177 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~-~~g~~~v~GvD~s~~~~---------~~~~aDa~~LP--f-~d~SFD~V~s~~l~ 177 (258)
.+.++.+||=.||| .|..+..++ ..|. +++.++.++... .++...-..+. . ....+|+++... -
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~-g 237 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATA-P 237 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECC-C
Confidence 45677899999954 222233333 3565 688887653211 11111000000 0 012478887631 0
Q ss_pred ccCChHHHHHHHHhcccCCcEEEEE
Q 025071 178 HALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 178 h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
....+.++.+.|++||.++..
T Consensus 238 ----~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 238 ----NAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred ----chHHHHHHHHHcccCCEEEEE
Confidence 134568899999999998865
No 440
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.18 E-value=1.3e+02 Score=27.15 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=45.6
Q ss_pred CEEEEECCCCCH--HHHHHHhcCCCcEEEEeCCCCCCc------------------------------ee-eecCCCCCC
Q 025071 117 SKALSIGARVGQ--EVAALKLVGVSDSIGIDLVPRPPL------------------------------VI-KGDFHAQPF 163 (258)
Q Consensus 117 ~~VLDIGcGtG~--~~~~L~~~g~~~v~GvD~s~~~~~------------------------------~~-~aDa~~LPf 163 (258)
.+|-=||+|+-. .+..++..|. +|+..|.++.... +. ..|.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED--- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH---
Confidence 468888988533 3455666775 7999997532100 00 111111
Q ss_pred CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEE
Q 025071 164 DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 164 ~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
-+..|+|+..+.+...-...+++++...++|+..++
T Consensus 81 -~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 -LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 134688887543332223456788999999987665
No 441
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=27.13 E-value=2e+02 Score=27.32 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=37.3
Q ss_pred CCEEEEEC-CCC--CHHHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeEEEeccccccCChHHHHHHHHhc
Q 025071 116 ESKALSIG-ARV--GQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNVFDHALYPWKFVGEIERT 192 (258)
Q Consensus 116 ~~~VLDIG-cGt--G~~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~V~s~~l~h~~~p~~~l~Ei~RV 192 (258)
..+|.=|| .|. |.++..|.+.|. .|+++|.+... +.++. -...|+|+.++-... -..+++++..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~~~~------~~~~~---~~~aDlVilavP~~~--~~~~~~~l~~- 164 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQDDWD------RAEDI---LADAGMVIVSVPIHL--TEEVIARLPP- 164 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCCcch------hHHHH---HhcCCEEEEeCcHHH--HHHHHHHHhC-
Confidence 35788888 552 334556666775 69999864310 11100 124688877531111 1344566666
Q ss_pred ccCCcEE
Q 025071 193 LKPAGVC 199 (258)
Q Consensus 193 LKPGG~l 199 (258)
++||..+
T Consensus 165 l~~~~iv 171 (374)
T PRK11199 165 LPEDCIL 171 (374)
T ss_pred CCCCcEE
Confidence 6664433
No 442
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.99 E-value=2.4e+02 Score=25.32 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=46.0
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCC---------ceeeec-------CCCCCCCCCCeeEEEe
Q 025071 112 FLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPP---------LVIKGD-------FHAQPFDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~---------~~~~aD-------a~~LPf~d~SFD~V~s 173 (258)
.+.++..||=.||| .|..+..+++ .|...+++++.++... .++... ..++. .+..+|+++.
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~-~~~~~d~il~ 243 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELT-GGVGADAVLE 243 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCCCCEEEE
Confidence 34567777777765 2223333443 5664588888543110 011110 00111 2335788876
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+- ....+.++.+.|+++|.++..
T Consensus 244 ~~g-----~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 244 CVG-----TQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCC-----CHHHHHHHHHhhccCCEEEEe
Confidence 321 134678999999999998764
No 443
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=26.96 E-value=1.5e+02 Score=30.88 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=54.2
Q ss_pred CEEEEECCCCCH--HHHHHHhcCCCcEEEEeCCCCCC------------------------------ce-eeecCCCCCC
Q 025071 117 SKALSIGARVGQ--EVAALKLVGVSDSIGIDLVPRPP------------------------------LV-IKGDFHAQPF 163 (258)
Q Consensus 117 ~~VLDIGcGtG~--~~~~L~~~g~~~v~GvD~s~~~~------------------------------~~-~~aDa~~LPf 163 (258)
.+|--||+|+=. ++..++..|+ +|+-+|.++... .+ ...|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG--- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH---
Confidence 479999999732 4445566786 799999763210 00 0111111
Q ss_pred CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 164 DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 164 ~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-..-|+|+-++.+.+.-..++++|+.++++|+-++.-.++
T Consensus 390 -~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTS 429 (715)
T PRK11730 390 -FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS 429 (715)
T ss_pred -hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 1457899887777777777899999999999976655433
No 444
>PLN00203 glutamyl-tRNA reductase
Probab=26.91 E-value=1.8e+02 Score=29.26 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCH--HHHHHHhcCCCcEEEEeCCC
Q 025071 116 ESKALSIGARVGQ--EVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 116 ~~~VLDIGcGtG~--~~~~L~~~g~~~v~GvD~s~ 148 (258)
+.+|+=||+|.=. .+..|...|..+|+.++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~ 300 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE 300 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 6789999996322 22344556766788888753
No 445
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=26.77 E-value=43 Score=31.44 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=17.8
Q ss_pred HHHHHHHHhcccCCcEEEEEe
Q 025071 183 WKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii~v 203 (258)
+.++..+..+|+|||+++++.
T Consensus 221 ~~~L~~a~~~L~~gGrl~VIS 241 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVVIS 241 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCcEEEEEE
Confidence 457788999999999998874
No 446
>PRK06487 glycerate dehydrogenase; Provisional
Probab=26.68 E-value=1.1e+02 Score=28.45 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=40.9
Q ss_pred CCCEEEEECCCC-CHHH-HHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCC--CCeeEEEec-----cccccCChHHH
Q 025071 115 NESKALSIGARV-GQEV-AALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDN--GTFDFEFSN-----VFDHALYPWKF 185 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~~-~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d--~SFD~V~s~-----~l~h~~~p~~~ 185 (258)
.+.+|.=||+|. |+.. ..++..|. +|++.|....... .....+++ ..-|+|+.. .-.|+.+
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~~~~~-----~~~~~l~ell~~sDiv~l~lPlt~~T~~li~---- 216 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPGRPAR-----PDRLPLDELLPQVDALTLHCPLTEHTRHLIG---- 216 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCCccc-----ccccCHHHHHHhCCEEEECCCCChHHhcCcC----
Confidence 467899999985 5533 33444565 7999986422111 11112222 244777763 1122222
Q ss_pred HHHHHhcccCCcEEE
Q 025071 186 VGEIERTLKPAGVCV 200 (258)
Q Consensus 186 l~Ei~RVLKPGG~li 200 (258)
+|....+|||.+++
T Consensus 217 -~~~~~~mk~ga~lI 230 (317)
T PRK06487 217 -ARELALMKPGALLI 230 (317)
T ss_pred -HHHHhcCCCCeEEE
Confidence 56667789886554
No 447
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=26.55 E-value=1.2e+02 Score=29.43 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=23.1
Q ss_pred CCCEEEEECCCC-CHH-HHHHHhcCCCcEEEEeCC
Q 025071 115 NESKALSIGARV-GQE-VAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~-~~~L~~~g~~~v~GvD~s 147 (258)
.+.+|.=||+|. |.. +..+...|. +|++.|..
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~ 183 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIE 183 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 577899999986 553 444555675 79999975
No 448
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=26.51 E-value=90 Score=29.67 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=29.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 113 LFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 113 l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
+..+.+|.-+|.|.-+...+|++.+ ++|..||+++
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~P-a~id~VDlN~ 95 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAP-ARIDVVDLNP 95 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCC-ceeEEEeCCH
Confidence 4578899999999888898998876 4899999875
No 449
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.50 E-value=56 Score=29.53 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=45.3
Q ss_pred CEEEEECCCCCH--HHHHHHhcCCCcEEEEeCCCCCC------------------ceeeec-----CCCC----CCC--C
Q 025071 117 SKALSIGARVGQ--EVAALKLVGVSDSIGIDLVPRPP------------------LVIKGD-----FHAQ----PFD--N 165 (258)
Q Consensus 117 ~~VLDIGcGtG~--~~~~L~~~g~~~v~GvD~s~~~~------------------~~~~aD-----a~~L----Pf~--d 165 (258)
.+|-=||+|+-. .+..++..|. +|+.+|.++... .....+ ...+ .++ -
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 367888988433 3445566675 799999764210 000000 0000 111 1
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEE
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii 201 (258)
+.-|+|+.+..+...-...+++++...++++-.++.
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 346888876444333345667888888887765543
No 450
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=26.31 E-value=61 Score=29.56 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=43.5
Q ss_pred CEEEEECCCC--CHHHHHHHhcCC-CcEEEEeCCCCCCce-e-ee--c--CCCCCCCCCCeeEEEeccccccCChHHHHH
Q 025071 117 SKALSIGARV--GQEVAALKLVGV-SDSIGIDLVPRPPLV-I-KG--D--FHAQPFDNGTFDFEFSNVFDHALYPWKFVG 187 (258)
Q Consensus 117 ~~VLDIGcGt--G~~~~~L~~~g~-~~v~GvD~s~~~~~~-~-~a--D--a~~LPf~d~SFD~V~s~~l~h~~~p~~~l~ 187 (258)
.+|.=||+|. +..+..|.+.|. .+|+++|.++..... . .+ + .....-.-+..|+|+.++=.. ....+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~--~~~~v~~ 84 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG--ASGAVAA 84 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH--HHHHHHH
Confidence 5789999885 234455666664 379999976421100 0 00 0 001100113579888752111 1134556
Q ss_pred HHHhcccCCcEEEE
Q 025071 188 EIERTLKPAGVCVL 201 (258)
Q Consensus 188 Ei~RVLKPGG~lii 201 (258)
++...++||+.++.
T Consensus 85 ~l~~~l~~~~iv~d 98 (307)
T PRK07502 85 EIAPHLKPGAIVTD 98 (307)
T ss_pred HHHhhCCCCCEEEe
Confidence 77777888875544
No 451
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=26.26 E-value=2.9e+02 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCCCeeEEEeccccccCChHHHHH-HHHhcccCCcEEEEE
Q 025071 164 DNGTFDFEFSNVFDHALYPWKFVG-EIERTLKPAGVCVLH 202 (258)
Q Consensus 164 ~d~SFD~V~s~~l~h~~~p~~~l~-Ei~RVLKPGG~lii~ 202 (258)
+-...|++++. ++..+-. .+..-|||||.+++-
T Consensus 63 ~~~~~D~lva~------~~~~~~~~~~~~~l~~gg~vi~n 96 (181)
T PRK08534 63 QIYEPDYVIVQ------DPTLLDSVDVTSGLKKDGIIIIN 96 (181)
T ss_pred cCCCCCEEEEc------CHHHhcchhHhcCcCCCcEEEEE
Confidence 45688999983 1222111 346679999999885
No 452
>PRK07574 formate dehydrogenase; Provisional
Probab=26.26 E-value=1.3e+02 Score=29.10 Aligned_cols=85 Identities=16% Similarity=0.048 Sum_probs=42.9
Q ss_pred CCCEEEEECCCC-CHH-HHHHHhcCCCcEEEEeCCCCCCceee-ecCCC-CCCC--CCCeeEEEeccccccCChHHHH-H
Q 025071 115 NESKALSIGARV-GQE-VAALKLVGVSDSIGIDLVPRPPLVIK-GDFHA-QPFD--NGTFDFEFSNVFDHALYPWKFV-G 187 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~-~~~L~~~g~~~v~GvD~s~~~~~~~~-aDa~~-LPf~--d~SFD~V~s~~l~h~~~p~~~l-~ 187 (258)
.+.+|.=||+|. |.. +..|...|. +|++.|.+..+..... .+... -.++ -...|+|+... .--..-...+ +
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~l-Plt~~T~~li~~ 268 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHC-PLHPETEHLFDA 268 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcC-CCCHHHHHHhCH
Confidence 467899999984 643 445556675 7999997642211110 00100 0111 13458887631 1000111122 5
Q ss_pred HHHhcccCCcEEEE
Q 025071 188 EIERTLKPAGVCVL 201 (258)
Q Consensus 188 Ei~RVLKPGG~lii 201 (258)
|....+|||.+++=
T Consensus 269 ~~l~~mk~ga~lIN 282 (385)
T PRK07574 269 DVLSRMKRGSYLVN 282 (385)
T ss_pred HHHhcCCCCcEEEE
Confidence 67777899765543
No 453
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=26.05 E-value=2.9e+02 Score=23.48 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=21.6
Q ss_pred CCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 166 GTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 166 ~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+..|++++. ++.. +.+...-|||||.+++-
T Consensus 67 ~~~D~lva~------d~~~-~~~~~~~lk~gg~ii~n 96 (197)
T PRK06853 67 GKADLLLAF------EPLE-ALRYLPYLKKGGKVVVN 96 (197)
T ss_pred CCCCEEEEe------CHHH-HHHHHHhcCCCcEEEEE
Confidence 489999983 2333 34566678999999885
No 454
>PTZ00357 methyltransferase; Provisional
Probab=25.86 E-value=2e+02 Score=30.62 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=52.3
Q ss_pred EEEEECCCCCHHHHHH----HhcCC-CcEEEEeCCCCC------------------------CceeeecCCCCCCC----
Q 025071 118 KALSIGARVGQEVAAL----KLVGV-SDSIGIDLVPRP------------------------PLVIKGDFHAQPFD---- 164 (258)
Q Consensus 118 ~VLDIGcGtG~~~~~L----~~~g~-~~v~GvD~s~~~------------------------~~~~~aDa~~LPf~---- 164 (258)
.|+-+|+|-|-+.... ++.|. .+|++|+.++.. ..++..|..++.-+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999986532 33443 368899976320 13466777766432
Q ss_pred -------CCCeeEEEec---cc-cccCChHHHHHHHHhcccC----CcE
Q 025071 165 -------NGTFDFEFSN---VF-DHALYPWKFVGEIERTLKP----AGV 198 (258)
Q Consensus 165 -------d~SFD~V~s~---~l-~h~~~p~~~l~Ei~RVLKP----GG~ 198 (258)
-+.+|+|+|. +| +.-..|+ .+.-+.|.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPE-CLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPE-CLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHH-HHHHHHHhhhhhcccccc
Confidence 2469999995 44 3334454 56778888887 786
No 455
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=25.81 E-value=4.4e+02 Score=22.86 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=44.4
Q ss_pred CCCCCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCC--------CceeeecCCCC-----CCCCCCeeEEEecc
Q 025071 112 FLFNESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRP--------PLVIKGDFHAQ-----PFDNGTFDFEFSNV 175 (258)
Q Consensus 112 ~l~~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~--------~~~~~aDa~~L-----Pf~d~SFD~V~s~~ 175 (258)
.+.++.+||-.||. .|..+..+++ .|. ++++++.+... ..++ +.... .-..+.+|+|+.++
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~d~vi~~~ 216 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCSTRNAELVRSLGADEVI--DYTTEDFVALTAGGEKYDVIFDAV 216 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCHHHHHHHHHcCCCEee--cCCCCCcchhccCCCCCcEEEECC
Confidence 36678899999983 4555555554 565 68777632100 0011 11111 12345689988742
Q ss_pred ccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 176 FDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 176 l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-.+ ..... +....|+++|.++..
T Consensus 217 ~~~---~~~~~-~~~~~l~~~g~~i~~ 239 (319)
T cd08267 217 GNS---PFSLY-RASLALKPGGRYVSV 239 (319)
T ss_pred Cch---HHHHH-HhhhccCCCCEEEEe
Confidence 211 12222 233349999998865
No 456
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=25.64 E-value=2.2e+02 Score=22.44 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCC--CHHHHHHHhcCCCcEEEEeCCC
Q 025071 114 FNESKALSIGARV--GQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 114 ~~~~~VLDIGcGt--G~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..+.+|+-+|||. ...+..|.+.|...|+.+|.++
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3567899999973 1233445555545788888753
No 457
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=25.60 E-value=82 Score=30.57 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.8
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhc
Q 025071 1 MKPTIPKLPLLLKPFFVSLFFSFFLLTFLCLS 32 (258)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (258)
|.-|+.+.--+.+++++|++|-+-|+.++++.
T Consensus 1 m~~~~~~~~~~~~aiiiSv~LHvlLi~lLi~g 32 (387)
T PRK09510 1 MSKATEQNDKLKRAIIISVVLHIILFALLIWS 32 (387)
T ss_pred CCccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 66677777788889999999998887777654
No 458
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=25.25 E-value=3.9e+02 Score=28.03 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=54.1
Q ss_pred CEEEEECCCCCH--HHHHHHhcCCCcEEEEeCCCCCC------------------------------cee-eecCCCCCC
Q 025071 117 SKALSIGARVGQ--EVAALKLVGVSDSIGIDLVPRPP------------------------------LVI-KGDFHAQPF 163 (258)
Q Consensus 117 ~~VLDIGcGtG~--~~~~L~~~g~~~v~GvD~s~~~~------------------------------~~~-~aDa~~LPf 163 (258)
.+|--||+|+=. ++..++..|+ +|+-+|.++... .+. ..|... +
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG--F 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH--h
Confidence 478899998632 3445566786 799999753210 000 111111 1
Q ss_pred CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 164 DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 164 ~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
...|+|+-++++.+.-..++++|+.++++|+.++.-.+
T Consensus 413 --~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNT 450 (737)
T TIGR02441 413 --KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNT 450 (737)
T ss_pred --ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 45788888778877777889999999999997776543
No 459
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=25.10 E-value=4.1e+02 Score=24.14 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=44.2
Q ss_pred CCEEEEECCCC--CHHHHHHHhcCCCcEEEEeCCCCC-----Cceee---ecC-------CCCCCCCCCeeEEEeccccc
Q 025071 116 ESKALSIGARV--GQEVAALKLVGVSDSIGIDLVPRP-----PLVIK---GDF-------HAQPFDNGTFDFEFSNVFDH 178 (258)
Q Consensus 116 ~~~VLDIGcGt--G~~~~~L~~~g~~~v~GvD~s~~~-----~~~~~---aDa-------~~LPf~d~SFD~V~s~~l~h 178 (258)
..+|+=||+|. |.++..|++.|. +|+-+..++.. ...+. ++. ...+-....+|+|+.++=.+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 83 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT 83 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence 35788898883 334556777774 67666643310 00000 100 00011235789998742111
Q ss_pred cCChHHHHHHHHhcccCCcEEEEE
Q 025071 179 ALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 179 ~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+-..+++.+.-.++|++.++..
T Consensus 84 --~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 84 --ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred --ChHhHHHHHhhhcCCCCEEEEe
Confidence 1234667777788888876553
No 460
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=25.09 E-value=1.1e+02 Score=22.46 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=22.7
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhc
Q 025071 3 PTIPKLPLLLKPFFVSLFFSFFLLTFLCLS 32 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (258)
|..|.+|.......+++++++.+-+.++|.
T Consensus 50 P~~P~~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 50 PDKPVSPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888888888887777665
No 461
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=24.84 E-value=1.5e+02 Score=28.43 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=17.5
Q ss_pred EEEEECCC-CCHHHHHHHhcCCCcEEEEeCCC
Q 025071 118 KALSIGAR-VGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 118 ~VLDIGcG-tG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
+|--||+| -|.-...+...|+ +|+|+|+++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~-~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH-EVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-cEEEEECCH
Confidence 45556777 3432223223474 799999864
No 462
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=24.70 E-value=1.5e+02 Score=29.71 Aligned_cols=86 Identities=12% Similarity=-0.036 Sum_probs=45.4
Q ss_pred CCCEEEEECCCCCHHHHHH--HhcCCCcEE------EEeCCCCCCceeeecCC---CCCCCCCCeeEEEeccccccCChH
Q 025071 115 NESKALSIGARVGQEVAAL--KLVGVSDSI------GIDLVPRPPLVIKGDFH---AQPFDNGTFDFEFSNVFDHALYPW 183 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L--~~~g~~~v~------GvD~s~~~~~~~~aDa~---~LPf~d~SFD~V~s~~l~h~~~p~ 183 (258)
.+.+|+=||||.=..+.++ +..|. +|+ +||...........|.. ++.=.-...|+|++..=+. . ..
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-~-q~ 111 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-Q-HS 111 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH-H-HH
Confidence 5789999999974444333 33454 343 33332211110000100 0100124678888732111 1 33
Q ss_pred HHHHHHHhcccCCcEEEEEe
Q 025071 184 KFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 184 ~~l~Ei~RVLKPGG~lii~v 203 (258)
.+.+++...||||..+.+.-
T Consensus 112 ~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 112 DVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HHHHHHHhhCCCCCEEEecC
Confidence 45599999999999998863
No 463
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=24.61 E-value=1.8e+02 Score=25.81 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCC
Q 025071 101 SRFFQDLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 101 ~~~~~~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~ 148 (258)
..+.++++.. .-..+..|||.=+|+|....+....| ...+|+|+.+
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~ 254 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINP 254 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcC-CceEEEecCH
Confidence 3455555554 45678999999999999887766666 4799999864
No 464
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=24.55 E-value=5e+02 Score=25.66 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=46.9
Q ss_pred CEEEEECCCCCHH--HHHHHhcCCCcEEEEeCCCCCC--------c-------------------eeeecCCCCCCCCCC
Q 025071 117 SKALSIGARVGQE--VAALKLVGVSDSIGIDLVPRPP--------L-------------------VIKGDFHAQPFDNGT 167 (258)
Q Consensus 117 ~~VLDIGcGtG~~--~~~L~~~g~~~v~GvD~s~~~~--------~-------------------~~~aDa~~LPf~d~S 167 (258)
.+|=-+|=|.=.+ +..+++.|+ +|+|+|+.+... . -...|.+.+ ..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l----~~ 84 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL----KE 84 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc----cc
Confidence 5677777774332 345567786 799999864210 0 011122222 24
Q ss_pred eeEEEec---cccccCCh-----HHHHHHHHhcccCCcEEEEE
Q 025071 168 FDFEFSN---VFDHALYP-----WKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 168 FD~V~s~---~l~h~~~p-----~~~l~Ei~RVLKPGG~lii~ 202 (258)
-|+++.+ =+.+-.+| ..+.+.|.++||+|-.+++.
T Consensus 85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlE 127 (436)
T COG0677 85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILE 127 (436)
T ss_pred CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5665543 23332334 35678999999998877775
No 465
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=24.50 E-value=1.2e+02 Score=28.50 Aligned_cols=59 Identities=19% Similarity=0.091 Sum_probs=33.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHh-cCCCcEEEEeCCCCCCceeeecCCCC-CCCCCCeeEEEec
Q 025071 112 FLFNESKALSIGARVGQEVAALKL-VGVSDSIGIDLVPRPPLVIKGDFHAQ-PFDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcGtG~~~~~L~~-~g~~~v~GvD~s~~~~~~~~aDa~~L-Pf~d~SFD~V~s~ 174 (258)
...+++.++|.=-|.|..+.++.+ .+...++|+|..+.... .+ .+.| +| ++.|.++-.+
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~--~a-~~~l~~~-~~r~~~~~~~ 77 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALE--RA-KERLKKF-DDRFIFIHGN 77 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHH--HH-HCCTCCC-CTTEEEEES-
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHH--HH-HHHHhhc-cceEEEEecc
Confidence 356788999999999999988765 34468999997543110 11 1222 23 5667777664
No 466
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=24.28 E-value=3e+02 Score=24.32 Aligned_cols=82 Identities=18% Similarity=0.144 Sum_probs=46.4
Q ss_pred CCCCCCEEEEECC--CCCHHHHHHHh-cCCCcEEEEeCCCC---------CC-ceeeecCCCCCC-------CCCCeeEE
Q 025071 112 FLFNESKALSIGA--RVGQEVAALKL-VGVSDSIGIDLVPR---------PP-LVIKGDFHAQPF-------DNGTFDFE 171 (258)
Q Consensus 112 ~l~~~~~VLDIGc--GtG~~~~~L~~-~g~~~v~GvD~s~~---------~~-~~~~aDa~~LPf-------~d~SFD~V 171 (258)
.+.++.+||=.|+ +.|..+..+++ .|. ++++++.++. .. .++.. .+.++ ....+|++
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~v~~~~~~~~d~v 218 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINY--KTPDLAEALKEAAPDGIDVY 218 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCCceEEec--CChhHHHHHHHhccCCceEE
Confidence 4566788998884 24444444444 565 6888775321 11 11111 11111 12458888
Q ss_pred EeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 172 FSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 172 ~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
+..+ -...+.+..+.|+++|.++..
T Consensus 219 i~~~------g~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 219 FDNV------GGEILDAALTLLNKGGRIALC 243 (329)
T ss_pred EEcc------hHHHHHHHHHhcCCCceEEEE
Confidence 8642 123578999999999997754
No 467
>PRK10458 DNA cytosine methylase; Provisional
Probab=24.19 E-value=93 Score=30.87 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=27.6
Q ss_pred CCEEEEECCCCCHHHHHHHhcCCCcEEEEeCC
Q 025071 116 ESKALSIGARVGQEVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 116 ~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s 147 (258)
.-+++|+=||.|.+...+...|+..|.++|+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid 119 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWN 119 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEech
Confidence 34899999999999999988898667889975
No 468
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=23.97 E-value=86 Score=27.02 Aligned_cols=33 Identities=30% Similarity=0.230 Sum_probs=25.4
Q ss_pred CCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeCC
Q 025071 115 NESKALSIGARV-GQ-EVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~s 147 (258)
...+||=+|||. |. .+..|+..|+.+++-+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 457899999994 44 4567788898889999954
No 469
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=23.93 E-value=3e+02 Score=24.69 Aligned_cols=86 Identities=17% Similarity=0.034 Sum_probs=46.5
Q ss_pred CCCCCCEEEEECCC-CCHHHHHHHh-cCCCcEEEEeCCCCCCc-------eeeecCCCCC--------CCCCCeeEEEec
Q 025071 112 FLFNESKALSIGAR-VGQEVAALKL-VGVSDSIGIDLVPRPPL-------VIKGDFHAQP--------FDNGTFDFEFSN 174 (258)
Q Consensus 112 ~l~~~~~VLDIGcG-tG~~~~~L~~-~g~~~v~GvD~s~~~~~-------~~~aDa~~LP--------f~d~SFD~V~s~ 174 (258)
.+.++.+||=.|+| .|..+..+++ .|...+++++.++.... -...+..+.. ..+..+|+|+.+
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~ 241 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVA 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEEC
Confidence 45678888888865 3444444444 46532777664321100 0001111111 123458988864
Q ss_pred cccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 175 VFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 175 ~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.- -...+.++.+.|+++|+++..
T Consensus 242 ~~-----~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 242 TG-----SPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred CC-----ChHHHHHHHHHhhcCCEEEEE
Confidence 21 123567889999999998765
No 470
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=23.87 E-value=4.2e+02 Score=24.58 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=22.0
Q ss_pred cCCCCCCEEEEECCCC-CHHHHHHH-hcCCCcEEEEeCC
Q 025071 111 HFLFNESKALSIGARV-GQEVAALK-LVGVSDSIGIDLV 147 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGt-G~~~~~L~-~~g~~~v~GvD~s 147 (258)
..+.++.+||=.|+|. |..+..++ ..|..+|+.+|.+
T Consensus 186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~ 224 (373)
T cd08299 186 AKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDIN 224 (373)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 4466788899887642 22222333 3565468888754
No 471
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=23.61 E-value=1.2e+02 Score=29.02 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=24.6
Q ss_pred CEEEEECCCCCH----HHHHHHhcC-CCcEEEEeCCC
Q 025071 117 SKALSIGARVGQ----EVAALKLVG-VSDSIGIDLVP 148 (258)
Q Consensus 117 ~~VLDIGcGtG~----~~~~L~~~g-~~~v~GvD~s~ 148 (258)
-.++..|.|||. ..++|.+++ ...|+|+|...
T Consensus 213 vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~ 249 (362)
T KOG1252|consen 213 VDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQE 249 (362)
T ss_pred CCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCc
Confidence 458889999998 468888865 35799999753
No 472
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=23.55 E-value=3.2e+02 Score=20.55 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=19.1
Q ss_pred hcCCCCCCEEEEECCCCCHHH-HHHHh-cCC-CcEEEEeCC
Q 025071 110 RHFLFNESKALSIGARVGQEV-AALKL-VGV-SDSIGIDLV 147 (258)
Q Consensus 110 ~~~l~~~~~VLDIGcGtG~~~-~~L~~-~g~-~~v~GvD~s 147 (258)
+..+..+++||-|||-+|.=+ ..++. .|. ++.+||-..
T Consensus 33 ~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 33 QGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp C---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred cCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 334444589999999999743 22322 232 467787654
No 473
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=23.49 E-value=2e+02 Score=25.64 Aligned_cols=82 Identities=20% Similarity=0.095 Sum_probs=42.4
Q ss_pred EEEEECCCCCH--HHHHHHhcCCCcEEEEeCCCCCC------ce-e-eecC----CCC--CCCCCCeeEEEeccccccCC
Q 025071 118 KALSIGARVGQ--EVAALKLVGVSDSIGIDLVPRPP------LV-I-KGDF----HAQ--PFDNGTFDFEFSNVFDHALY 181 (258)
Q Consensus 118 ~VLDIGcGtG~--~~~~L~~~g~~~v~GvD~s~~~~------~~-~-~aDa----~~L--Pf~d~SFD~V~s~~l~h~~~ 181 (258)
+|+=+|||.-. ++..|++.|. +|+.+|..+... .+ . .++. ... +-+.+.+|+|+..+=. .+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~--~~ 78 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA--YQ 78 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccc--cc
Confidence 57888887533 3445666674 688888632110 00 0 0110 000 0011568988874211 12
Q ss_pred hHHHHHHHHhcccCCcEEEEE
Q 025071 182 PWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 182 p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-..+++++...+.++..++..
T Consensus 79 ~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 79 LPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred HHHHHHHHhhhcCCCCEEEEe
Confidence 345667777777776655543
No 474
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=23.31 E-value=2.3e+02 Score=19.63 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=15.2
Q ss_pred HHHHHHHhcccCCcEEEEE
Q 025071 184 KFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 184 ~~l~Ei~RVLKPGG~lii~ 202 (258)
.-++++.+.+..||.+++.
T Consensus 51 ~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 3357888899999999874
No 475
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=23.02 E-value=5.3e+02 Score=22.74 Aligned_cols=84 Identities=25% Similarity=0.297 Sum_probs=45.3
Q ss_pred cCCCCCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCCCc------eeeecCCCCC-----CCCCCeeEEEeccc
Q 025071 111 HFLFNESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRPPL------VIKGDFHAQP-----FDNGTFDFEFSNVF 176 (258)
Q Consensus 111 ~~l~~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~~~------~~~aDa~~LP-----f~d~SFD~V~s~~l 176 (258)
..+.++.+||=.|+. .|..+..+++ .|. .|++++. ..... ....+..... ...+.+|+++..+-
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~vl~~~~ 212 (331)
T cd08273 135 AKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATPIDYRTKDWLPAMLTPGGVDVVFDGVG 212 (331)
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeEEcCCCcchhhhhccCCCceEEEECCc
Confidence 346678899988872 3334444444 454 5776653 21000 0001111111 12246888886421
Q ss_pred cccCChHHHHHHHHhcccCCcEEEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
...+.+..+.|+++|.++..
T Consensus 213 ------~~~~~~~~~~l~~~g~~v~~ 232 (331)
T cd08273 213 ------GESYEESYAALAPGGTLVCY 232 (331)
T ss_pred ------hHHHHHHHHHhcCCCEEEEE
Confidence 22367889999999998764
No 476
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=22.97 E-value=1.8e+02 Score=26.66 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCHHHHHHHhcCCCcEEEEe
Q 025071 115 NESKALSIGARVGQEVAALKLVGVSDSIGID 145 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD 145 (258)
...-|.+||.|.|..++.+-+.|..+..-++
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE 80 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVE 80 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeee
Confidence 4467999999999999998877765544344
No 477
>PRK08818 prephenate dehydrogenase; Provisional
Probab=22.84 E-value=1.8e+02 Score=27.89 Aligned_cols=75 Identities=11% Similarity=-0.056 Sum_probs=39.2
Q ss_pred CCEEEEECC-C--CCHHHHHHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeEEEecc-ccccCChHHHHHHHHh
Q 025071 116 ESKALSIGA-R--VGQEVAALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDFEFSNV-FDHALYPWKFVGEIER 191 (258)
Q Consensus 116 ~~~VLDIGc-G--tG~~~~~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~V~s~~-l~h~~~p~~~l~Ei~R 191 (258)
..+|.=||. | .|.++.+|++....+|+|+|..... .....-.-...|+|+.++ +.. -..+++|+..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-------~~~~~~~v~~aDlVilavPv~~---~~~~l~~l~~ 73 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-------SLDPATLLQRADVLIFSAPIRH---TAALIEEYVA 73 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-------cCCHHHHhcCCCEEEEeCCHHH---HHHHHHHHhh
Confidence 357889997 6 3445667765422379999974210 111110013479888752 111 1234566665
Q ss_pred c---ccCCcEEE
Q 025071 192 T---LKPAGVCV 200 (258)
Q Consensus 192 V---LKPGG~li 200 (258)
. |+||..+.
T Consensus 74 ~~~~l~~~~iVt 85 (370)
T PRK08818 74 LAGGRAAGQLWL 85 (370)
T ss_pred hhcCCCCCeEEE
Confidence 4 56755443
No 478
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=22.63 E-value=1.4e+02 Score=27.97 Aligned_cols=81 Identities=11% Similarity=0.001 Sum_probs=40.6
Q ss_pred CCCEEEEECCCC-CHHHH-HHH-hcCCCcEEEEeCCCCCCceeeecCCCCCCCC--CCeeEEEecc-----ccccCChHH
Q 025071 115 NESKALSIGARV-GQEVA-ALK-LVGVSDSIGIDLVPRPPLVIKGDFHAQPFDN--GTFDFEFSNV-----FDHALYPWK 184 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~~~-~L~-~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d--~SFD~V~s~~-----l~h~~~p~~ 184 (258)
.+.+|.=||.|. |+... .++ ..|. +|++.|...........+....++++ ...|+|+... -.|+.+
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~--- 219 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFG--- 219 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccC---
Confidence 567899999985 55433 343 3554 68888864211100000011111211 3457777631 112222
Q ss_pred HHHHHHhcccCCcEEEE
Q 025071 185 FVGEIERTLKPAGVCVL 201 (258)
Q Consensus 185 ~l~Ei~RVLKPGG~lii 201 (258)
+|....+|||.+++=
T Consensus 220 --~~~l~~mk~ga~lIN 234 (323)
T PRK15409 220 --AEQFAKMKSSAIFIN 234 (323)
T ss_pred --HHHHhcCCCCeEEEE
Confidence 567778899765543
No 479
>PRK08328 hypothetical protein; Provisional
Probab=22.54 E-value=91 Score=27.52 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=24.7
Q ss_pred CCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeC
Q 025071 115 NESKALSIGARV-GQ-EVAALKLVGVSDSIGIDL 146 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~ 146 (258)
.+.+|+=+|||. |. .+..|+..|+.+++-+|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 356899999993 44 456778889888888884
No 480
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=22.49 E-value=4.2e+02 Score=22.01 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=21.6
Q ss_pred CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 165 NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
-+..|++++- ++.. +.....-|||||.+++-
T Consensus 62 ~~~~D~lval------~~~~-~~~~~~~l~~~g~vi~n 92 (170)
T PRK08338 62 VTKADVLVAL------HQLG-YETAKSSLKEDGLLIID 92 (170)
T ss_pred CCCCCEEEEc------CHHH-HHHHhcccCCCeEEEEe
Confidence 3568999873 3443 34555678999999875
No 481
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=22.08 E-value=3.2e+02 Score=25.34 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=22.0
Q ss_pred CeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 167 TFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 167 SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+|+|+..+ . ...+.+..+.|+++|+++..
T Consensus 285 g~d~vid~~-g-----~~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 285 DPDIVFEHP-G-----RATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred CCeEEEECC-c-----hHhHHHHHHHhccCCEEEEE
Confidence 588888642 1 13467889999999998875
No 482
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=22.01 E-value=1.4e+02 Score=29.82 Aligned_cols=81 Identities=12% Similarity=0.152 Sum_probs=51.1
Q ss_pred CEEEEECCCC-C-HHHHHHHhcCCCcEEEEeCCCCCC-------------c-----------------ee-eecCCCCCC
Q 025071 117 SKALSIGARV-G-QEVAALKLVGVSDSIGIDLVPRPP-------------L-----------------VI-KGDFHAQPF 163 (258)
Q Consensus 117 ~~VLDIGcGt-G-~~~~~L~~~g~~~v~GvD~s~~~~-------------~-----------------~~-~aDa~~LPf 163 (258)
.+|-=||+|+ | .++..++..|+ +|+..|.++... . +. ..+... +
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~--~ 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD--L 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH--h
Confidence 5688889984 3 24556667786 799999764210 0 11 111111 2
Q ss_pred CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 164 DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 164 ~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
..-|+|+.++.+...-...+++|+.++++|+.++...
T Consensus 85 --~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasn 121 (507)
T PRK08268 85 --ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATN 121 (507)
T ss_pred --CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 2469999876666555567778999998988766543
No 483
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=21.85 E-value=1.9e+02 Score=22.94 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=26.6
Q ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCC
Q 025071 106 DLKQRHFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLV 147 (258)
Q Consensus 106 ~L~~~~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s 147 (258)
.|.+.....++-.++|.|++.-..+..+. ++..++=||..
T Consensus 6 ~L~~~~~~~~~v~vid~gt~~~~l~~~l~--~~d~viiVDA~ 45 (134)
T TIGR00140 6 ALQQRYAFPDNVTLLDGGTQGLYLLPLIE--SADRLIILDAV 45 (134)
T ss_pred HHHHhCCCCCCeEEEecCccHHHHHHHHh--cCCeEEEEecc
Confidence 34333334456678998888777777776 45678888964
No 484
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=21.81 E-value=49 Score=31.73 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=31.2
Q ss_pred CCCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 163 FDNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 163 f~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
|+.+++|. ..+..|+.+-..+..-..-.++|+|.+.+..
T Consensus 275 ~~w~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e 313 (364)
T KOG1269|consen 275 FPWNTPLT--RDTITHWQDKSALFRGRVATLKPGGKVLILE 313 (364)
T ss_pred cccccccc--hhheeecccccHHHHhHhhccCcCceEEehh
Confidence 77889998 3356777777777788888999999998863
No 485
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=21.76 E-value=2.2e+02 Score=29.59 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=53.6
Q ss_pred CEEEEECCCC-C-HHHHHHH-hcCCCcEEEEeCCCCCC------------------c-----------eeeecCCCCCCC
Q 025071 117 SKALSIGARV-G-QEVAALK-LVGVSDSIGIDLVPRPP------------------L-----------VIKGDFHAQPFD 164 (258)
Q Consensus 117 ~~VLDIGcGt-G-~~~~~L~-~~g~~~v~GvD~s~~~~------------------~-----------~~~aDa~~LPf~ 164 (258)
.+|--||+|+ | .++..++ ..|+ +|+-.|.++... . -+... .++. .
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~-~ 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR-G 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH-H
Confidence 5799999997 2 2344455 5576 799899753210 0 00100 0111 1
Q ss_pred CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEec
Q 025071 165 NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVA 204 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~ 204 (258)
-...|+|+-++.+...-..++++|+.++++|+.++.-.++
T Consensus 387 ~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS 426 (708)
T PRK11154 387 FKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTS 426 (708)
T ss_pred hccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 1457888887777776677899999999999977765433
No 486
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=21.58 E-value=5.5e+02 Score=22.46 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=45.4
Q ss_pred CCCCCCEEEEECCC--CCHHHHHHHh-cCCCcEEEEeCCCCCCce-------eeecCCCCC--------CCCCCeeEEEe
Q 025071 112 FLFNESKALSIGAR--VGQEVAALKL-VGVSDSIGIDLVPRPPLV-------IKGDFHAQP--------FDNGTFDFEFS 173 (258)
Q Consensus 112 ~l~~~~~VLDIGcG--tG~~~~~L~~-~g~~~v~GvD~s~~~~~~-------~~aDa~~LP--------f~d~SFD~V~s 173 (258)
.+.++.+||=.|++ .|..+..+++ .|. +++.+..+...... ..-+..+.. .....+|+|+.
T Consensus 135 ~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~ 213 (323)
T cd05282 135 KLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALD 213 (323)
T ss_pred cCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEE
Confidence 45678899988874 4555545544 564 56666543211000 000111101 12245898887
Q ss_pred ccccccCChHHHHHHHHhcccCCcEEEEE
Q 025071 174 NVFDHALYPWKFVGEIERTLKPAGVCVLH 202 (258)
Q Consensus 174 ~~l~h~~~p~~~l~Ei~RVLKPGG~lii~ 202 (258)
.+- . ....++.+.|+++|+++..
T Consensus 214 ~~g----~--~~~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 214 AVG----G--ESATRLARSLRPGGTLVNY 236 (323)
T ss_pred CCC----C--HHHHHHHHhhCCCCEEEEE
Confidence 421 1 1235788999999998764
No 487
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=21.58 E-value=1.4e+02 Score=27.03 Aligned_cols=33 Identities=27% Similarity=0.119 Sum_probs=25.2
Q ss_pred CEEEEECCCCCH-HHHHHHhcC-CCcEEEEeCCCC
Q 025071 117 SKALSIGARVGQ-EVAALKLVG-VSDSIGIDLVPR 149 (258)
Q Consensus 117 ~~VLDIGcGtG~-~~~~L~~~g-~~~v~GvD~s~~ 149 (258)
.+||=.|+|++. .+..|++.| ..+|+++|.++.
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred ceEEEecCCccHHHHHHHHHhccCCEEEEECCCCc
Confidence 379999999994 667787775 247999998754
No 488
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=21.37 E-value=1.4e+02 Score=24.12 Aligned_cols=82 Identities=24% Similarity=0.245 Sum_probs=39.1
Q ss_pred CCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeC-CCCCCc---eeeecCCCCCC--CCCCeeEEEeccccccCChHHHHH
Q 025071 116 ESKALSIGARV-GQ-EVAALKLVGVSDSIGIDL-VPRPPL---VIKGDFHAQPF--DNGTFDFEFSNVFDHALYPWKFVG 187 (258)
Q Consensus 116 ~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~-s~~~~~---~~~aDa~~LPf--~d~SFD~V~s~~l~h~~~p~~~l~ 187 (258)
..+|==||+|. |. ++.+|.+.|+ .|.++-- +..... ....+...... -.+..|+++..+ |+..+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav------pDdaI~ 82 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV------PDDAIA 82 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-------CCHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCcccccccccccccccccccccccccCCEEEEEe------chHHHH
Confidence 35788899984 32 4667777886 6888753 110000 00111111111 125689998853 444555
Q ss_pred HHHhcccCC-----cEEEEEec
Q 025071 188 EIERTLKPA-----GVCVLHVA 204 (258)
Q Consensus 188 Ei~RVLKPG-----G~lii~v~ 204 (258)
++..-|..- |.++++++
T Consensus 83 ~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 83 EVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHHHHHCC--S-TT-EEEES-
T ss_pred HHHHHHHHhccCCCCcEEEECC
Confidence 555555543 57777765
No 489
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=21.25 E-value=3.1e+02 Score=24.89 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCHH---HHHHHhcCCCcEEEEeCCC
Q 025071 115 NESKALSIGARVGQE---VAALKLVGVSDSIGIDLVP 148 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~---~~~L~~~g~~~v~GvD~s~ 148 (258)
.+.++|=+|+| |.- +.+|++.|..+|+-++.+.
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999997 542 2334567876688777653
No 490
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.05 E-value=82 Score=29.54 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=49.3
Q ss_pred CEEEEECCCC--CHHHHHHHhcCCCcEEEEeCCCCCCc------------ee-e----ec-CCCC----CCCC--CCeeE
Q 025071 117 SKALSIGARV--GQEVAALKLVGVSDSIGIDLVPRPPL------------VI-K----GD-FHAQ----PFDN--GTFDF 170 (258)
Q Consensus 117 ~~VLDIGcGt--G~~~~~L~~~g~~~v~GvD~s~~~~~------------~~-~----aD-a~~L----Pf~d--~SFD~ 170 (258)
.+|--||+|+ ..++..++..|+ +|+..|.++.... .. . +. ...+ .+++ +.-|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 5788899984 234555667786 7999998642100 00 0 00 0011 1111 34588
Q ss_pred EEeccccccCChHHHHHHHHhcccCCcEEE
Q 025071 171 EFSNVFDHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 171 V~s~~l~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
|+-++.+...-....++|+.++++|+-++.
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 887666555555677899999999987443
No 491
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=21.03 E-value=1e+02 Score=30.80 Aligned_cols=78 Identities=18% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCCEEEEECCCC-CH-HHHHHHhcCCCcEEEEeCCCCCCc-----eeeecCCCCCCCCCCeeEEEec-----cccccCCh
Q 025071 115 NESKALSIGARV-GQ-EVAALKLVGVSDSIGIDLVPRPPL-----VIKGDFHAQPFDNGTFDFEFSN-----VFDHALYP 182 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~-~~~~L~~~g~~~v~GvD~s~~~~~-----~~~aDa~~LPf~d~SFD~V~s~-----~l~h~~~p 182 (258)
.+.+|.=||+|. |. .+..++..|. +|++.|....... +...+.+++ -...|+|+.. .-.|+.+
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~g~~~~~l~el---l~~aDiV~l~lP~t~~t~~li~- 213 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDPYISPERAAQLGVELVSLDEL---LARADFITLHTPLTPETRGLIG- 213 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCChhHHHhcCCEEEcHHHH---HhhCCEEEEccCCChHhhcCcC-
Confidence 467899999985 43 3445556675 7999997432110 111111111 1345888763 1223332
Q ss_pred HHHHHHHHhcccCCcEEEE
Q 025071 183 WKFVGEIERTLKPAGVCVL 201 (258)
Q Consensus 183 ~~~l~Ei~RVLKPGG~lii 201 (258)
+|....+|||.+++=
T Consensus 214 ----~~~l~~mk~ga~lIN 228 (526)
T PRK13581 214 ----AEELAKMKPGVRIIN 228 (526)
T ss_pred ----HHHHhcCCCCeEEEE
Confidence 466667888765554
No 492
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=20.64 E-value=46 Score=32.96 Aligned_cols=42 Identities=17% Similarity=0.035 Sum_probs=33.7
Q ss_pred cCCCCCCEEEEECCCCCHHHHHHHhcCCCcEEEEeCCCCCCce
Q 025071 111 HFLFNESKALSIGARVGQEVAALKLVGVSDSIGIDLVPRPPLV 153 (258)
Q Consensus 111 ~~l~~~~~VLDIGcGtG~~~~~L~~~g~~~v~GvD~s~~~~~~ 153 (258)
+.+++|..|-|+-||.|-++.-++..|+ .|++-|+.+.+..+
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~ 286 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKW 286 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHH
Confidence 3567889999999999999887777775 89999997654433
No 493
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.61 E-value=4.8e+02 Score=21.40 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=50.1
Q ss_pred CCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCceEEeeeec-CCCC
Q 025071 165 NGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESELVAVRKVD-GFGL 243 (258)
Q Consensus 165 d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~~~~v~~v~-g~~l 243 (258)
++-.|+|+.=--.---+-...+-.+.+.|..||.+.+.+|...+ ..++ +..+|.+....+|++..+.++ +..-
T Consensus 43 ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr-----~g~V-~~~~I~eaA~taGL~~t~~~~v~~dW 116 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGR-----PGHV-EPSDIREAAPTAGLVQTKSCAVGDDW 116 (127)
T ss_pred cccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCC-----CCCC-CHHHHHHHHhhcCCeeeeeeccCCCc
Confidence 45677776510000013455677889999999999998874322 1222 567799999999998877663 2211
Q ss_pred e-EEEEEEe
Q 025071 244 D-TEVVFRK 251 (258)
Q Consensus 244 ~-~~~~f~K 251 (258)
. +.++.+|
T Consensus 117 sg~rLv~rk 125 (127)
T PF11253_consen 117 SGTRLVRRK 125 (127)
T ss_pred cEEEeeccC
Confidence 1 4555555
No 494
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=20.42 E-value=72 Score=23.32 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCCCH
Q 025071 104 FQDLKQRHFLFNESKALSIGARVGQ 128 (258)
Q Consensus 104 ~~~L~~~~~l~~~~~VLDIGcGtG~ 128 (258)
+..+++.+.+++|.+||-+|.|.|.
T Consensus 57 L~~~~~~g~~~~Gd~vl~~~~G~G~ 81 (90)
T PF08541_consen 57 LADALEEGRIKPGDRVLLVGFGAGF 81 (90)
T ss_dssp HHHHHHTTSSCTTEEEEEEEEETTT
T ss_pred HHHHHHcCCCCCCCEEEEEEEEhhh
Confidence 3445556678899999999999985
No 495
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=20.34 E-value=1.5e+02 Score=29.75 Aligned_cols=52 Identities=29% Similarity=0.471 Sum_probs=33.9
Q ss_pred CCCEEEEECCCCCHHHH--HHHhcCCCcEEEEeCCCCCCceeeecCCCCCCCCCCeeE
Q 025071 115 NESKALSIGARVGQEVA--ALKLVGVSDSIGIDLVPRPPLVIKGDFHAQPFDNGTFDF 170 (258)
Q Consensus 115 ~~~~VLDIGcGtG~~~~--~L~~~g~~~v~GvD~s~~~~~~~~aDa~~LPf~d~SFD~ 170 (258)
.+.+|+=||+|...++. .|.+.|+.++.-++.+.. +=|..+..||.|+-+|+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR----IGGRI~ti~~~d~~iel 73 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDR----IGGRIHTIPFADGVIEL 73 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccc----cCceEeeEEcCCCeEee
Confidence 45689999999877654 355667777766664322 33445677887775553
No 496
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=20.21 E-value=41 Score=25.82 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=22.0
Q ss_pred CCCCeeEEEeccccccCChHHHHHHHHhcccCCcEEEEEe
Q 025071 164 DNGTFDFEFSNVFDHALYPWKFVGEIERTLKPAGVCVLHV 203 (258)
Q Consensus 164 ~d~SFD~V~s~~l~h~~~p~~~l~Ei~RVLKPGG~lii~v 203 (258)
..+.||+|+..+ . .....++..+.++| |||.++...
T Consensus 16 ~~~~~D~ViD~~-g--~~~~~~~~~~~~~l-~~G~~v~i~ 51 (127)
T PF13602_consen 16 GPGGVDVVIDTV-G--QTGESLLDASRKLL-PGGRVVSIG 51 (127)
T ss_dssp TTS-EEEEEESS----CCHHHCGGGCCCTE-EEEEEEEE-
T ss_pred CCCCceEEEECC-C--CccHHHHHHHHHHC-CCCEEEEEC
Confidence 467899999842 1 11233346677888 999975543
No 497
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=20.21 E-value=2.4e+02 Score=25.76 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=25.0
Q ss_pred CCCEEEEECCC-CCH-HHHHHHhcCCCcEEEEeC
Q 025071 115 NESKALSIGAR-VGQ-EVAALKLVGVSDSIGIDL 146 (258)
Q Consensus 115 ~~~~VLDIGcG-tG~-~~~~L~~~g~~~v~GvD~ 146 (258)
.+.+|+=+||| .|. .+.+|++.|+.+++-+|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~ 62 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 45789999999 344 456788889888988885
No 498
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=20.21 E-value=2.3e+02 Score=26.21 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCCEEEEECCCC-CHHH-HHHHhcCCCcEEEEeCCCCCC--ceeeecCCCCCCCCCCeeEEEecc-----ccccCChHHH
Q 025071 115 NESKALSIGARV-GQEV-AALKLVGVSDSIGIDLVPRPP--LVIKGDFHAQPFDNGTFDFEFSNV-----FDHALYPWKF 185 (258)
Q Consensus 115 ~~~~VLDIGcGt-G~~~-~~L~~~g~~~v~GvD~s~~~~--~~~~aDa~~LPf~d~SFD~V~s~~-----l~h~~~p~~~ 185 (258)
.+.+|.=||.|. |+.. ..++..|. +|++.|...... .+...+.+++ + ..-|+|+... -.|+.+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~~~~~~~~~~~l~el-l--~~sDvv~lh~Plt~~T~~li~---- 215 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGKNKNEEYERVSLEEL-L--KTSDIISIHAPLNEKTKNLIA---- 215 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCccccccCceeecHHHH-h--hcCCEEEEeCCCCchhhcccC----
Confidence 577899999984 5543 33444565 799999753211 0111111111 1 2347776631 122222
Q ss_pred HHHHHhcccCCcEEEEEeccccCcCcCCCCCCCChhHHHHHhhcCc
Q 025071 186 VGEIERTLKPAGVCVLHVALSRRADKYSANDLFSVKPLVKLFRESE 231 (258)
Q Consensus 186 l~Ei~RVLKPGG~lii~v~~~~~~~~y~~~~~~s~~~l~~lf~~~~ 231 (258)
+|....+|||.+++=+ .| ..+.+.+.+.+.+++..
T Consensus 216 -~~~~~~Mk~~a~lIN~---aR-------G~vVDe~AL~~AL~~g~ 250 (311)
T PRK08410 216 -YKELKLLKDGAILINV---GR-------GGIVNEKDLAKALDEKD 250 (311)
T ss_pred -HHHHHhCCCCeEEEEC---CC-------ccccCHHHHHHHHHcCC
Confidence 5667788998766532 21 22335666777776543
No 499
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=20.04 E-value=3.7e+02 Score=24.53 Aligned_cols=80 Identities=20% Similarity=0.176 Sum_probs=42.0
Q ss_pred EEEEECCCC-C-HHHHHHHhcCCCcEEEEeCCCCCC-----ceeeec--------------CCCCCCCCCCeeEEEeccc
Q 025071 118 KALSIGARV-G-QEVAALKLVGVSDSIGIDLVPRPP-----LVIKGD--------------FHAQPFDNGTFDFEFSNVF 176 (258)
Q Consensus 118 ~VLDIGcGt-G-~~~~~L~~~g~~~v~GvD~s~~~~-----~~~~aD--------------a~~LPf~d~SFD~V~s~~l 176 (258)
+|.=||+|. | .++..|++.|. +|+.+|.++... .....+ ...-+-....+|+|+..+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v- 81 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGA-DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV- 81 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC-cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe-
Confidence 688888884 3 24456667775 788888643100 000000 000011124689888742
Q ss_pred cccCChHHHHHHHHhcccCCcEEE
Q 025071 177 DHALYPWKFVGEIERTLKPAGVCV 200 (258)
Q Consensus 177 ~h~~~p~~~l~Ei~RVLKPGG~li 200 (258)
.. .+-..+++++...++++-.++
T Consensus 82 k~-~~~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 82 KS-AATADAAAALAGHARPGAVVV 104 (341)
T ss_pred cC-cchHHHHHHHHhhCCCCCEEE
Confidence 11 122456778888887765443
Done!