Query 025072
Match_columns 258
No_of_seqs 180 out of 748
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 98.4 1.8E-07 6.2E-12 68.5 3.1 32 2-33 29-60 (72)
2 2k9n_A MYB24; R2R3 domain, DNA 98.2 6.1E-07 2.1E-11 69.7 2.8 33 2-34 73-105 (107)
3 2din_A Cell division cycle 5-l 98.1 1.2E-06 4E-11 63.0 3.1 35 2-37 29-63 (66)
4 3zqc_A MYB3; transcription-DNA 98.0 1.6E-06 5.4E-11 69.6 2.0 35 2-36 74-108 (131)
5 2ltp_A Nuclear receptor corepr 97.2 1.2E-06 4.1E-11 67.0 0.0 29 2-30 36-64 (89)
6 3osg_A MYB21; transcription-DN 97.9 7.7E-06 2.6E-10 65.3 4.0 28 2-29 82-109 (126)
7 1ign_A Protein (RAP1); RAP1,ye 97.9 2.5E-06 8.5E-11 77.1 0.9 29 4-32 36-64 (246)
8 2cqr_A RSGI RUH-043, DNAJ homo 97.8 6.4E-06 2.2E-10 61.6 2.2 26 2-27 42-67 (73)
9 2cjj_A Radialis; plant develop 97.8 1.3E-05 4.4E-10 62.5 3.8 29 2-30 32-60 (93)
10 1guu_A C-MYB, MYB proto-oncoge 97.8 1.6E-05 5.5E-10 54.3 3.2 26 3-28 25-50 (52)
11 2yum_A ZZZ3 protein, zinc fing 97.7 3.9E-06 1.3E-10 61.5 -0.0 31 2-32 34-64 (75)
12 2llk_A Cyclin-D-binding MYB-li 97.7 1.1E-05 3.7E-10 60.5 1.9 23 2-25 43-65 (73)
13 2d9a_A B-MYB, MYB-related prot 97.7 1.3E-05 4.4E-10 56.4 1.8 28 2-29 29-56 (60)
14 1ity_A TRF1; helix-turn-helix, 97.6 1.5E-05 5.2E-10 57.7 1.7 32 2-33 31-64 (69)
15 1w0t_A Telomeric repeat bindin 97.6 2.5E-05 8.7E-10 53.8 2.1 28 2-29 23-52 (53)
16 1gvd_A MYB proto-oncogene prot 97.6 3E-05 1E-09 53.0 2.4 25 3-27 25-49 (52)
17 1x41_A Transcriptional adaptor 97.5 3.6E-05 1.2E-09 54.5 1.8 27 2-28 29-55 (60)
18 2dim_A Cell division cycle 5-l 97.4 1.7E-05 5.9E-10 57.4 -0.9 30 2-31 30-59 (70)
19 2ckx_A NGTRF1, telomere bindin 97.3 0.00014 4.8E-09 55.5 3.4 29 3-31 22-54 (83)
20 2elk_A SPCC24B10.08C protein; 96.9 0.00033 1.1E-08 49.3 2.0 25 2-26 30-55 (58)
21 3sjm_A Telomeric repeat-bindin 96.8 0.00077 2.6E-08 48.7 3.2 28 2-29 32-61 (64)
22 2juh_A Telomere binding protei 96.8 0.00073 2.5E-08 55.1 3.1 28 3-30 39-70 (121)
23 1x58_A Hypothetical protein 49 96.6 0.0011 3.7E-08 48.8 2.6 28 2-29 28-58 (62)
24 2aje_A Telomere repeat-binding 96.6 0.0014 4.7E-08 52.2 3.3 28 3-30 35-66 (105)
25 2cqq_A RSGI RUH-037, DNAJ homo 96.4 0.0013 4.3E-08 48.9 2.1 26 2-28 32-57 (72)
26 1h89_C C-MYB, MYB proto-oncoge 96.2 0.0017 5.9E-08 53.1 2.1 26 2-27 79-104 (159)
27 1h8a_C AMV V-MYB, MYB transfor 95.9 0.0027 9.3E-08 50.2 1.9 26 2-27 48-73 (128)
28 2yus_A SWI/SNF-related matrix- 95.9 0.0022 7.4E-08 48.2 1.3 24 2-25 38-61 (79)
29 2eqr_A N-COR1, N-COR, nuclear 95.8 0.0035 1.2E-07 44.5 1.9 26 2-27 32-57 (61)
30 2roh_A RTBP1, telomere binding 95.7 0.005 1.7E-07 50.2 2.6 29 3-31 53-85 (122)
31 1gv2_A C-MYB, MYB proto-oncoge 95.7 0.0052 1.8E-07 46.9 2.6 26 2-27 25-50 (105)
32 3hm5_A DNA methyltransferase 1 95.4 0.014 4.9E-07 45.7 4.1 33 2-34 50-87 (93)
33 3osg_A MYB21; transcription-DN 94.6 0.017 5.9E-07 45.8 2.6 25 3-27 32-56 (126)
34 2k9n_A MYB24; R2R3 domain, DNA 94.5 0.017 5.8E-07 44.5 2.3 26 2-27 22-47 (107)
35 2iw5_B Protein corest, REST co 94.4 0.009 3.1E-07 53.8 0.6 28 2-29 153-180 (235)
36 3zqc_A MYB3; transcription-DNA 93.7 0.028 9.6E-07 44.7 2.2 26 2-27 23-48 (131)
37 1wgx_A KIAA1903 protein; MYB D 93.6 0.018 6.3E-07 43.2 0.9 25 2-26 32-56 (73)
38 1ign_A Protein (RAP1); RAP1,ye 91.0 0.11 3.7E-06 47.1 2.7 28 3-30 173-200 (246)
39 4eef_G F-HB80.4, designed hema 90.2 0.058 2E-06 40.9 0.1 24 2-25 44-67 (74)
40 1h89_C C-MYB, MYB proto-oncoge 87.8 0.088 3E-06 42.8 -0.4 26 2-27 27-52 (159)
41 1ug2_A 2610100B20RIK gene prod 87.5 0.28 9.7E-06 38.7 2.4 32 3-35 57-88 (95)
42 4iej_A DNA methyltransferase 1 83.0 1.3 4.3E-05 34.7 4.1 32 3-34 51-87 (93)
43 2lr8_A CAsp8-associated protei 83.5 0.24 8.3E-06 37.2 0.0 24 3-27 38-61 (70)
44 1h8a_C AMV V-MYB, MYB transfor 69.0 0.99 3.4E-05 35.4 0.0 22 7-28 1-22 (128)
45 2yqk_A Arginine-glutamic acid 46.0 14 0.00049 25.9 2.8 23 3-25 30-53 (63)
46 4a69_C Nuclear receptor corepr 45.1 15 0.0005 28.0 2.9 24 3-26 64-87 (94)
47 2crg_A Metastasis associated p 36.2 22 0.00077 25.5 2.6 23 3-25 29-52 (70)
48 1w1n_A Phosphatidylinositol 3- 36.0 4.4 0.00015 25.9 -1.1 15 116-130 16-30 (33)
49 1fex_A TRF2-interacting telome 35.2 16 0.00055 25.6 1.6 24 4-27 33-57 (59)
50 2ebi_A DNA binding protein GT- 23.6 50 0.0017 23.9 2.6 32 3-35 35-70 (86)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.36 E-value=1.8e-07 Score=68.50 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=29.6
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHHHHHh
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 33 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKklk~ 33 (258)
++|..||++|||||++.|||||+.+++++++.
T Consensus 29 ~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 29 RRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999887766
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.19 E-value=6.1e-07 Score=69.71 Aligned_cols=33 Identities=30% Similarity=0.723 Sum_probs=29.1
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHHHHHhh
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL 34 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKklk~~ 34 (258)
++|+.||++|||||++.|||||+.++++..+..
T Consensus 73 ~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 73 PKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp SCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 589999999999999999999998888766543
No 3
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.2e-06 Score=62.99 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.0
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHHHHHhhcCC
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTG 37 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKklk~~~s~ 37 (258)
++|.+||+ |||||++.|||||+.+|++.+++....
T Consensus 29 ~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 29 TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence 58999999 999999999999999999988776543
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.01 E-value=1.6e-06 Score=69.55 Aligned_cols=35 Identities=43% Similarity=0.853 Sum_probs=30.9
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHHHHHhhcC
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT 36 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKklk~~~s 36 (258)
++|+.||++|||||++.|||||+.+|++++.....
T Consensus 74 ~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 74 SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 68999999999999999999999999888765443
No 5
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.18 E-value=1.2e-06 Score=67.03 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=26.8
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKKK 30 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKk 30 (258)
++|..||.+|||||++.|||||+.++++.
T Consensus 36 ~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 36 RNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 57999999999999999999999888774
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.89 E-value=7.7e-06 Score=65.26 Aligned_cols=28 Identities=50% Similarity=0.835 Sum_probs=25.6
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKK 29 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkK 29 (258)
++|..||++|||||+++|||||+.++++
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999976665
No 7
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.88 E-value=2.5e-06 Score=77.10 Aligned_cols=29 Identities=31% Similarity=0.657 Sum_probs=27.7
Q ss_pred HHHHhCcCCCCChHHHHHHHHHHHHHHHH
Q 025072 4 WAAIASYLPQRTDNDIKNYWNTHLKKKLK 32 (258)
Q Consensus 4 Ws~IAk~LPGRTDN~IKNrWnt~LkKklk 32 (258)
|..||++|||||+|.|||||+.+|++++.
T Consensus 36 W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 36 YDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp HHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999765
No 8
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.82 E-value=6.4e-06 Score=61.63 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=23.8
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
++|.+||.+|||||+++||+||+.++
T Consensus 42 ~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 42 DCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp HHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 48999999999999999999999654
No 9
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.80 E-value=1.3e-05 Score=62.54 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=26.1
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKKK 30 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKk 30 (258)
++|.+||.+|||||+++||+||+.+++..
T Consensus 32 ~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 32 DRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp THHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999876553
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.75 E-value=1.6e-05 Score=54.28 Aligned_cols=26 Identities=42% Similarity=0.887 Sum_probs=24.2
Q ss_pred cHHHHhCcCCCCChHHHHHHHHHHHH
Q 025072 3 RWAAIASYLPQRTDNDIKNYWNTHLK 28 (258)
Q Consensus 3 kWs~IAk~LPGRTDN~IKNrWnt~Lk 28 (258)
+|..||.+|||||++.|++||+.+|+
T Consensus 25 ~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 25 DWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999998763
No 11
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=3.9e-06 Score=61.48 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=27.4
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKKKLK 32 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKklk 32 (258)
++|.+||.+|||||++.|++||+.+|++.++
T Consensus 34 ~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 34 RRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999877776543
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.71 E-value=1.1e-05 Score=60.49 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.8
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNT 25 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt 25 (258)
++|+.||++| |||++.|||||+.
T Consensus 43 ~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 43 NDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp SCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCHHHHHHHh-CCCHHHHHHHHHH
Confidence 6899999999 9999999999995
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.68 E-value=1.3e-05 Score=56.39 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=25.1
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKK 29 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkK 29 (258)
++|..||.+|||||++.||+||+.+|+.
T Consensus 29 ~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 29 QDWKFLASHFPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp TCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999999976643
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.63 E-value=1.5e-05 Score=57.67 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=28.6
Q ss_pred CcHHHHhCcCC--CCChHHHHHHHHHHHHHHHHh
Q 025072 2 SRWAAIASYLP--QRTDNDIKNYWNTHLKKKLKK 33 (258)
Q Consensus 2 NkWs~IAk~LP--GRTDN~IKNrWnt~LkKklk~ 33 (258)
++|..||.+|| |||++.||+||+.+|+..+.+
T Consensus 31 ~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 31 GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 58999999999 999999999999988876544
No 15
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.58 E-value=2.5e-05 Score=53.81 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=25.7
Q ss_pred CcHHHHhCcCC--CCChHHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLP--QRTDNDIKNYWNTHLKK 29 (258)
Q Consensus 2 NkWs~IAk~LP--GRTDN~IKNrWnt~LkK 29 (258)
++|..||.+|| |||++.||+||+..+|.
T Consensus 23 ~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 23 GNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp TCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 58999999999 99999999999987764
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.57 E-value=3e-05 Score=53.02 Aligned_cols=25 Identities=36% Similarity=0.791 Sum_probs=23.3
Q ss_pred cHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 3 RWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 3 kWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
+|..||.+|||||++.||+||+.+|
T Consensus 25 ~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 25 RWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 5999999999999999999999765
No 17
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.47 E-value=3.6e-05 Score=54.48 Aligned_cols=27 Identities=11% Similarity=0.356 Sum_probs=24.6
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLK 28 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~Lk 28 (258)
++|.+||++|||||++.||+||+.+|.
T Consensus 29 ~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 29 GNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp TCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 689999999999999999999997653
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=1.7e-05 Score=57.42 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=26.5
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKKKL 31 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKkl 31 (258)
++|..||.+|||||+..|++||+.+|+..+
T Consensus 30 ~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 30 NQWSRIASLLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHcCCcc
Confidence 589999999999999999999998776544
No 19
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.31 E-value=0.00014 Score=55.53 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=26.1
Q ss_pred cHHHHhCc----CCCCChHHHHHHHHHHHHHHH
Q 025072 3 RWAAIASY----LPQRTDNDIKNYWNTHLKKKL 31 (258)
Q Consensus 3 kWs~IAk~----LPGRTDN~IKNrWnt~LkKkl 31 (258)
+|+.|++. |+|||+++||++|+.++|+.-
T Consensus 22 ~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 22 RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 79999995 899999999999999887654
No 20
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.92 E-value=0.00033 Score=49.34 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=23.1
Q ss_pred CcHHHHhCcCC-CCChHHHHHHHHHH
Q 025072 2 SRWAAIASYLP-QRTDNDIKNYWNTH 26 (258)
Q Consensus 2 NkWs~IAk~LP-GRTDN~IKNrWnt~ 26 (258)
++|..||++|| |||++.+++||+.+
T Consensus 30 ~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 30 GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 68999999999 99999999999854
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.81 E-value=0.00077 Score=48.73 Aligned_cols=28 Identities=39% Similarity=0.659 Sum_probs=24.1
Q ss_pred CcHHHHhCcCC--CCChHHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLP--QRTDNDIKNYWNTHLKK 29 (258)
Q Consensus 2 NkWs~IAk~LP--GRTDN~IKNrWnt~LkK 29 (258)
.+|..||+++| |||+..+|+||+..+|.
T Consensus 32 ~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~ 61 (64)
T 3sjm_A 32 GNWAAISKNYPFVNRTAVMIKDRWRTMKRL 61 (64)
T ss_dssp TCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CchHHHHhhcCCCCCCHHHHHHHHHHHhcc
Confidence 47999999866 99999999999976653
No 22
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.75 E-value=0.00073 Score=55.10 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=25.4
Q ss_pred cHHHHhCc----CCCCChHHHHHHHHHHHHHH
Q 025072 3 RWAAIASY----LPQRTDNDIKNYWNTHLKKK 30 (258)
Q Consensus 3 kWs~IAk~----LPGRTDN~IKNrWnt~LkKk 30 (258)
+|+.|+++ |+|||+++||++|+.++++.
T Consensus 39 ~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 39 RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 89999998 59999999999999988764
No 23
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.57 E-value=0.0011 Score=48.78 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=24.3
Q ss_pred CcHHHHh---CcCCCCChHHHHHHHHHHHHH
Q 025072 2 SRWAAIA---SYLPQRTDNDIKNYWNTHLKK 29 (258)
Q Consensus 2 NkWs~IA---k~LPGRTDN~IKNrWnt~LkK 29 (258)
.+|..|+ ++|+|||+.+||++|+.++|+
T Consensus 28 ~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 28 NHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp SCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred HhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 4799999 789999999999999975543
No 24
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.56 E-value=0.0014 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=24.7
Q ss_pred cHHHHhCcC----CCCChHHHHHHHHHHHHHH
Q 025072 3 RWAAIASYL----PQRTDNDIKNYWNTHLKKK 30 (258)
Q Consensus 3 kWs~IAk~L----PGRTDN~IKNrWnt~LkKk 30 (258)
+|..|++.+ +|||+++||++|+.++++.
T Consensus 35 ~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 35 RWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp SHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 899999965 9999999999999877653
No 25
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.41 E-value=0.0013 Score=48.94 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.0
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLK 28 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~Lk 28 (258)
+||.+||.+| |||.++|++||+.+++
T Consensus 32 ~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 32 GRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp THHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 5899999998 9999999999996543
No 26
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.21 E-value=0.0017 Score=53.07 Aligned_cols=26 Identities=35% Similarity=0.762 Sum_probs=23.6
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
.+|..||.+|||||++.|++||+.+|
T Consensus 79 ~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 79 KRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred ccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 36999999999999999999998754
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.93 E-value=0.0027 Score=50.25 Aligned_cols=26 Identities=35% Similarity=0.756 Sum_probs=23.5
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
.+|..||.+|||||+..+++||+.+|
T Consensus 48 ~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 48 KRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 36999999999999999999999654
No 28
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=95.92 E-value=0.0022 Score=48.23 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=22.3
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNT 25 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt 25 (258)
++|.+||++|++||+..|++||+.
T Consensus 38 ~~W~~IA~~v~~RT~~qcr~r~~~ 61 (79)
T 2yus_A 38 DDWNKVSEHVGSRTQDECILHFLR 61 (79)
T ss_dssp SCHHHHHHHHSSCCHHHHHHHHTT
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 579999999999999999999983
No 29
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.82 E-value=0.0035 Score=44.53 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.3
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
.+|..||.+||+||..+|++||+...
T Consensus 32 k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 32 KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 46999999999999999999999643
No 30
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.69 E-value=0.005 Score=50.25 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=25.5
Q ss_pred cHHHHhCc----CCCCChHHHHHHHHHHHHHHH
Q 025072 3 RWAAIASY----LPQRTDNDIKNYWNTHLKKKL 31 (258)
Q Consensus 3 kWs~IAk~----LPGRTDN~IKNrWnt~LkKkl 31 (258)
+|+.|++. |+|||+++||++|..++|+.-
T Consensus 53 ~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 53 RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 79999996 499999999999998887653
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.68 E-value=0.0052 Score=46.86 Aligned_cols=26 Identities=35% Similarity=0.762 Sum_probs=23.4
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
.+|..||.+|||||+..++.||+..|
T Consensus 25 ~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 25 KRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp TCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 36999999999999999999998654
No 32
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.37 E-value=0.014 Score=45.67 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=28.3
Q ss_pred CcHHHHhCcC-----CCCChHHHHHHHHHHHHHHHHhh
Q 025072 2 SRWAAIASYL-----PQRTDNDIKNYWNTHLKKKLKKL 34 (258)
Q Consensus 2 NkWs~IAk~L-----PGRTDN~IKNrWnt~LkKklk~~ 34 (258)
.||..|++++ ++||..+||+||+...++.++..
T Consensus 50 lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 50 LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4899999999 58999999999998777766554
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=94.56 E-value=0.017 Score=45.77 Aligned_cols=25 Identities=28% Similarity=0.721 Sum_probs=23.5
Q ss_pred cHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 3 RWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 3 kWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
+|..||.+||||++..++.||+..|
T Consensus 32 ~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 32 DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 7999999999999999999999765
No 34
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=94.49 E-value=0.017 Score=44.48 Aligned_cols=26 Identities=19% Similarity=0.560 Sum_probs=23.6
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
.+|..||.+|||||+..++.||+.+|
T Consensus 22 ~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 22 KDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp SCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 37999999999999999999998654
No 35
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=94.38 E-value=0.009 Score=53.75 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=25.0
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHLKK 29 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~LkK 29 (258)
+.|..||+++++||++.|||||+.+.||
T Consensus 153 KDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 153 RDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp SCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5699999999999999999999976554
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=93.71 E-value=0.028 Score=44.72 Aligned_cols=26 Identities=35% Similarity=0.873 Sum_probs=23.8
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
..|..||.+|||||+..++.||+.+|
T Consensus 23 ~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 23 QNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 46999999999999999999998765
No 37
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.59 E-value=0.018 Score=43.21 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=22.8
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTH 26 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~ 26 (258)
.+|.+||.++||||..+|+.||..+
T Consensus 32 ~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 32 GFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred cHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5799999999999999999999854
No 38
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=90.98 E-value=0.11 Score=47.05 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=25.3
Q ss_pred cHHHHhCcCCCCChHHHHHHHHHHHHHH
Q 025072 3 RWAAIASYLPQRTDNDIKNYWNTHLKKK 30 (258)
Q Consensus 3 kWs~IAk~LPGRTDN~IKNrWnt~LkKk 30 (258)
.|..||+++|+||++.+||||...|++.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999777653
No 39
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=90.17 E-value=0.058 Score=40.94 Aligned_cols=24 Identities=29% Similarity=0.708 Sum_probs=21.6
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNT 25 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt 25 (258)
.||.+||..+||||..+|+.++..
T Consensus 44 dRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 44 DRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp SSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred cHHHHHHHHcCCCCHHHHHHHHHH
Confidence 589999999999999999998763
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=87.77 E-value=0.088 Score=42.85 Aligned_cols=26 Identities=42% Similarity=0.883 Sum_probs=8.4
Q ss_pred CcHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 2 SRWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 2 NkWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
..|..||.+||||+...++.||...|
T Consensus 27 ~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 52 (159)
T 1h89_C 27 DDWKVIANYLPNRTDVQCQHRWQKVL 52 (159)
T ss_dssp ----------------CHHHHHHTTT
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHcc
Confidence 46999999999999999999998654
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=87.46 E-value=0.28 Score=38.73 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=25.9
Q ss_pred cHHHHhCcCCCCChHHHHHHHHHHHHHHHHhhc
Q 025072 3 RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 35 (258)
Q Consensus 3 kWs~IAk~LPGRTDN~IKNrWnt~LkKklk~~~ 35 (258)
.|+.||+.|..|+.|.|+|||+. |.+-+.+..
T Consensus 57 tFa~iA~~L~Nks~nqV~~RFq~-Lm~Lf~~~~ 88 (95)
T 1ug2_A 57 TFSVISQQLGNKTPVEVSHRFRE-LMQLFHTAC 88 (95)
T ss_dssp THHHHHHHHSSCCHHHHHHHHHH-HHHHHHHCS
T ss_pred HHHHHHHHHccCCHHHHHHHHHH-HHHHHHHHh
Confidence 69999999999999999999996 444454444
No 42
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=82.98 E-value=1.3 Score=34.75 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=26.6
Q ss_pred cHHHHhCcCC-----CCChHHHHHHHHHHHHHHHHhh
Q 025072 3 RWAAIASYLP-----QRTDNDIKNYWNTHLKKKLKKL 34 (258)
Q Consensus 3 kWs~IAk~LP-----GRTDN~IKNrWnt~LkKklk~~ 34 (258)
||-.|+.++. .||-.+||.||+...++.++..
T Consensus 51 Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 51 RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 7999999984 7999999999998777755443
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=83.49 E-value=0.24 Score=37.21 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.5
Q ss_pred cHHHHhCcCCCCChHHHHHHHHHHH
Q 025072 3 RWAAIASYLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 3 kWs~IAk~LPGRTDN~IKNrWnt~L 27 (258)
.|+.||..| +|+.|.|+|||..++
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQQLM 61 (70)
Confidence 589999999 999999999999644
No 44
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=69.02 E-value=0.99 Score=35.36 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=0.4
Q ss_pred HhCcCCCCChHHHHHHHHHHHH
Q 025072 7 IASYLPQRTDNDIKNYWNTHLK 28 (258)
Q Consensus 7 IAk~LPGRTDN~IKNrWnt~Lk 28 (258)
||.+|||||...++.||...|.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~ 22 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLN 22 (128)
T ss_dssp ---------------------C
T ss_pred CccccCCCCHHHHHHHHHHhhC
Confidence 8999999999999999986553
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.95 E-value=14 Score=25.93 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=20.7
Q ss_pred cHHHHhC-cCCCCChHHHHHHHHH
Q 025072 3 RWAAIAS-YLPQRTDNDIKNYWNT 25 (258)
Q Consensus 3 kWs~IAk-~LPGRTDN~IKNrWnt 25 (258)
.|..|++ +||.||-.+|..+++.
T Consensus 30 df~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 30 NFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCcHHHHHHHHhc
Confidence 4899999 6999999999999985
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=45.08 E-value=15 Score=28.00 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.6
Q ss_pred cHHHHhCcCCCCChHHHHHHHHHH
Q 025072 3 RWAAIASYLPQRTDNDIKNYWNTH 26 (258)
Q Consensus 3 kWs~IAk~LPGRTDN~IKNrWnt~ 26 (258)
.|.+|+.+||+||.-++..+++.+
T Consensus 64 ~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 64 NFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHhcc
Confidence 489999999999999999998853
No 47
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=36.25 E-value=22 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=20.8
Q ss_pred cHHHHhC-cCCCCChHHHHHHHHH
Q 025072 3 RWAAIAS-YLPQRTDNDIKNYWNT 25 (258)
Q Consensus 3 kWs~IAk-~LPGRTDN~IKNrWnt 25 (258)
.|..|++ +||+||--+|..+++.
T Consensus 29 df~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 29 DFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4899999 6999999999999984
No 48
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=35.96 E-value=4.4 Score=25.91 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=13.5
Q ss_pred ccchHhHHHHHhhhh
Q 025072 116 ASNAENISRLLQNWM 130 (258)
Q Consensus 116 Ass~eNIsrlL~gWm 130 (258)
|.+.+|+++|..||+
T Consensus 16 At~~~NL~~my~GW~ 30 (33)
T 1w1n_A 16 ATSIERLCQHYIGWC 30 (33)
T ss_dssp HHHHHHHHTTSCSCC
T ss_pred hcCHHHHHHHhhhcc
Confidence 678899999999997
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=35.20 E-value=16 Score=25.62 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.3
Q ss_pred HHHHhC-cCCCCChHHHHHHHHHHH
Q 025072 4 WAAIAS-YLPQRTDNDIKNYWNTHL 27 (258)
Q Consensus 4 Ws~IAk-~LPGRTDN~IKNrWnt~L 27 (258)
|..|+. .+|++|-...|+||..+|
T Consensus 33 wk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 33 WKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp HHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred HHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 889999 799999999999998654
No 50
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=23.59 E-value=50 Score=23.90 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=25.5
Q ss_pred cHHHHhCcC----CCCChHHHHHHHHHHHHHHHHhhc
Q 025072 3 RWAAIASYL----PQRTDNDIKNYWNTHLKKKLKKLQ 35 (258)
Q Consensus 3 kWs~IAk~L----PGRTDN~IKNrWnt~LkKklk~~~ 35 (258)
.|..||..| -.||...+++.|.. |++..++..
T Consensus 35 ~W~~Ia~~m~~~G~~rs~~qC~~K~~n-L~k~Yk~~k 70 (86)
T 2ebi_A 35 LWEQISSKMREKGFDRSPDMCTDKWRN-LLKEFKKAK 70 (86)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHCSCS
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHH
Confidence 599999987 37999999999995 666666554
Done!