BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025073
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
Length = 279
Score = 130 bits (326), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 111/206 (53%), Gaps = 5/206 (2%)
Query: 3 ELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCII 60
+L +GYN +G SQG R V + C PP+ N +S+GG H G +P C S C
Sbjct: 77 KLQQGYNAMGFSQGGQFLRAVAQRCPS-PPMVNLISVGGQHQGVFGLPRCPGESSHICDF 135
Query: 61 ANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 120
+ A Y+ +Q+ L + Y P Y FL +N E N +YK+
Sbjct: 136 IRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQE--RGVNESYKKNLM 193
Query: 121 SLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRV 180
+L+ V++ F +D ++ P ++ WFG+Y G +P Q++ LYT+D +GLK +D AG++
Sbjct: 194 ALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLKAMDKAGQL 253
Query: 181 HFISVAGGHLKISKADMKKHIIPYLK 206
F+++ G HL++S+ HIIP+L+
Sbjct: 254 VFLALEGDHLQLSEEWFYAHIIPFLE 279
>pdb|3GRO|A Chain A, Human Palmitoyl-Protein Thioesterase 1
pdb|3GRO|B Chain B, Human Palmitoyl-Protein Thioesterase 1
Length = 298
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
Query: 3 ELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCII 60
+L +GYN G SQG R V + C PP N +S+GG H G +P C S C
Sbjct: 84 KLQQGYNAXGFSQGGQFLRAVAQRCPS-PPXINLISVGGQHQGVFGLPRCPGESSHICDF 142
Query: 61 ANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 120
+ A YS VQ+ L + Y P Y FL +N E N +YK+
Sbjct: 143 IRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE--RGINESYKKNLX 200
Query: 121 SLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRV 180
+L+ V + F +D ++ P ++ WFG+Y G +P Q+T LYT+D +GLK D+AG++
Sbjct: 201 ALKKFVXVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEXDNAGQL 260
Query: 181 HFISVAGGHLKISKADMKKHIIPYL 205
F++ G HL++S+ HIIP+L
Sbjct: 261 VFLATEGDHLQLSEEWFYAHIIPFL 285
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 4/187 (2%)
Query: 1 MKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLCGSGIFCII 60
M + +G +++ SQG L+ R ++ + V +F+SL P G +F
Sbjct: 98 MAKAPQGVHLICYSQGGLVCRALLSVMDDHN-VDSFISLSSPQMGQYGDTDYLKWLFPTS 156
Query: 61 ANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 120
+ + YS + Q+ + Y P+ YL FL +N E + +++ F
Sbjct: 157 MRSNLYRICYSPWGQE-FSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFL 215
Query: 121 SLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRV 180
+ +LVLI DD V+ P ++++FG+Y A VL ++ +Y D GLKTL G +
Sbjct: 216 RVGHLVLIGGPDDGVITPWQSSFFGFY--DANETVLEMEEQLVYLRDSFGLKTLLARGAI 273
Query: 181 HFISVAG 187
+AG
Sbjct: 274 VRCPMAG 280
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 38 SLGGPHAGTASVPLCGSGIFCIIANNLIKAEV-YSDYVQDHLAPSGYL 84
++ P A++ LC +GIF + NNL+ A+V + + H P+ Y+
Sbjct: 229 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI 276
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 38 SLGGPHAGTASVPLCGSGIFCIIANNLIKAEV-YSDYVQDHLAPSGYL 84
++ P A++ LC +GIF + NNL+ A+V + + H P+ Y+
Sbjct: 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI 280
>pdb|3GF8|A Chain A, Crystal Structure Of Putative Polysaccharide Binding
Proteins (Duf1812) (Np_809975.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 2.20 A Resolution
Length = 296
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 25/140 (17%)
Query: 120 SSLQNLVLIMFKDDKVLIPK--ETAWFGYYPDGAFSPVLPPQKT----------KLYTED 167
S+L +L L + ++ ++I K ET W+G + F + +T + +
Sbjct: 99 STLTDLKLKLKREASLIINKRXETLWYGEVINVNFDGTVHQTETINLIRDTKIVRFGFQS 158
Query: 168 WIGLKTLDDAGRVHFISVAGGHLKISKADMKKHII---PYLKDQA----------SVRVI 214
+ G TLD + I + GHL + + ++ PY +Q + R+
Sbjct: 159 YTGSWTLDXNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYXEQKDPATAYVDXNTXRLX 218
Query: 215 ESRKTKGPNEEEGSTELVFD 234
E RKT+ E+ S + VFD
Sbjct: 219 EDRKTRLVLTEKASGKRVFD 238
>pdb|2GQ1|A Chain A, Crystal Structure Of Recombinant Type I
Fructose-1,6-Bisphosphatase From Escherichia Coli
Complexed With Sulfate Ions
pdb|2OWZ|A Chain A, R-state, Citrate And Fru-6-p-bound Escherichia Coli
Fructose-1,6- Bisphosphatase
pdb|2OX3|A Chain A, R-State, Pep And Fru-6-P-Bound, Escherichia Coli
Fructose-1, 6-Bisphosphatase
pdb|2Q8M|A Chain A, T-Like Fructose-1,6-Bisphosphatase From Escherichia Coli
With Amp, Glucose 6-Phosphate, And Fructose
1,6-Bisphosphate Bound
pdb|2Q8M|B Chain B, T-Like Fructose-1,6-Bisphosphatase From Escherichia Coli
With Amp, Glucose 6-Phosphate, And Fructose
1,6-Bisphosphate Bound
pdb|2QVR|A Chain A, E. Coli Fructose-1,6-Bisphosphatase: Citrate, Fru-2,6-P2,
And Mg2+ Bound
Length = 332
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 41 GPHAGTASVPLCGSGIFCIIANNLI---KAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKC 97
G HA T L G+FC+ K + YS + Y+KFPN + KY++ C
Sbjct: 174 GVHAFTYDPSL---GVFCLCQERXRFPEKGKTYS------INEGNYIKFPNGVKKYIKFC 224
Query: 98 KFLPKLNN 105
+ K N
Sbjct: 225 QEEDKSTN 232
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 66 KAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFSSLQNL 125
+ YSD +++ L P GY L K K P N D +N F ++
Sbjct: 144 RGXAYSDLIKNDLEPKGYYS--------LSKVKLYPTYNETXADLKNGNLDLAF--IEEP 193
Query: 126 VLIMFKDDK 134
V FK+ K
Sbjct: 194 VYFTFKNKK 202
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 128 IMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKT---KLYTEDWIGLKTLDDAGRVHFIS 184
++FKD +VL+ K + +P G P P++T +++ E + + LD G +H+
Sbjct: 10 VLFKDGEVLLIKTPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWY 69
Query: 185 VAGGH 189
G
Sbjct: 70 TLKGE 74
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 66 KAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFSSLQNL 125
+ YSD +++ L P GY L K K P N D +N F ++
Sbjct: 124 RGXAYSDLIKNDLEPKGYYS--------LSKVKLYPTYNETXADLKNGNLDLAF--IEEP 173
Query: 126 VLIMFKDDK 134
V FK+ K
Sbjct: 174 VYFTFKNKK 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,209,375
Number of Sequences: 62578
Number of extensions: 363584
Number of successful extensions: 854
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 13
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)