Query 025074
Match_columns 258
No_of_seqs 209 out of 967
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 1.6E-64 3.5E-69 453.1 21.1 248 1-258 17-298 (302)
2 COG5539 Predicted cysteine pro 100.0 6.1E-31 1.3E-35 235.9 6.6 242 1-256 17-305 (306)
3 PF02338 OTU: OTU-like cystein 99.8 6.5E-22 1.4E-26 157.5 5.5 102 148-252 1-121 (121)
4 KOG3288 OTU-like cysteine prot 99.6 4.7E-16 1E-20 138.0 4.6 104 141-256 109-231 (307)
5 PF10275 Peptidase_C65: Peptid 99.4 7.5E-13 1.6E-17 118.4 6.0 80 171-257 157-244 (244)
6 KOG3991 Uncharacterized conser 99.2 3.3E-11 7.1E-16 105.9 5.5 78 171-258 174-256 (256)
7 KOG2605 OTU (ovarian tumor)-li 99.1 2E-11 4.4E-16 115.2 2.3 117 131-257 207-343 (371)
8 COG5539 Predicted cysteine pro 97.8 3.9E-06 8.5E-11 76.5 -0.1 95 149-256 119-230 (306)
9 PF05415 Peptidase_C36: Beet n 87.5 0.54 1.2E-05 36.2 2.7 58 147-212 3-68 (104)
10 PF05412 Peptidase_C33: Equine 78.6 2.3 5E-05 33.7 3.0 58 147-212 4-61 (108)
11 PF14282 FlxA: FlxA-like prote 75.3 15 0.00033 28.8 7.0 55 5-60 24-78 (106)
12 PF04645 DUF603: Protein of un 72.6 8.7 0.00019 33.1 5.2 45 2-53 107-151 (181)
13 PRK09784 hypothetical protein; 62.5 4.3 9.4E-05 37.1 1.5 23 137-159 195-217 (417)
14 PF05381 Peptidase_C21: Tymovi 59.3 60 0.0013 25.7 7.2 85 149-254 1-94 (104)
15 PF08232 Striatin: Striatin fa 58.2 28 0.0006 28.5 5.5 44 7-55 25-68 (134)
16 PF06657 Cep57_MT_bd: Centroso 57.8 32 0.0007 25.7 5.3 43 5-54 29-71 (79)
17 PF07851 TMPIT: TMPIT-like pro 53.7 23 0.00051 33.5 4.9 41 2-53 41-81 (330)
18 PF05529 Bap31: B-cell recepto 52.3 42 0.00091 28.7 5.9 54 7-61 125-181 (192)
19 KOG2605 OTU (ovarian tumor)-li 42.0 13 0.00028 35.8 1.2 49 171-219 2-50 (371)
20 KOG4364 Chromatin assembly fac 39.1 1.8E+02 0.0038 30.4 8.6 13 181-194 485-497 (811)
21 PF04420 CHD5: CHD5-like prote 38.8 1.3E+02 0.0028 25.2 6.7 54 5-58 38-91 (161)
22 PF02403 Seryl_tRNA_N: Seryl-t 38.2 1.2E+02 0.0027 23.1 6.1 44 7-52 50-93 (108)
23 TIGR00513 accA acetyl-CoA carb 36.6 71 0.0015 30.1 5.2 41 6-54 9-49 (316)
24 PF06810 Phage_GP20: Phage min 34.3 1.2E+02 0.0026 25.4 5.8 45 8-61 35-82 (155)
25 PRK05724 acetyl-CoA carboxylas 34.3 75 0.0016 30.0 5.0 41 6-54 9-49 (319)
26 PF06858 NOG1: Nucleolar GTP-b 34.1 51 0.0011 23.4 2.9 36 128-164 2-37 (58)
27 PF10779 XhlA: Haemolysin XhlA 33.5 85 0.0018 22.6 4.2 43 2-49 8-50 (71)
28 PF05159 Capsule_synth: Capsul 33.0 91 0.002 27.7 5.2 56 191-257 5-64 (269)
29 PLN03230 acetyl-coenzyme A car 31.8 91 0.002 30.7 5.2 41 6-54 79-119 (431)
30 PF08581 Tup_N: Tup N-terminal 31.4 1.3E+02 0.0028 22.5 4.9 20 33-52 57-76 (79)
31 CHL00198 accA acetyl-CoA carbo 30.5 99 0.0021 29.3 5.1 42 6-55 12-53 (322)
32 PF02388 FemAB: FemAB family; 29.1 1.2E+02 0.0026 29.2 5.6 44 6-51 248-291 (406)
33 PF04874 Mak16: Mak16 protein 28.6 1.2E+02 0.0026 23.8 4.5 32 95-135 2-33 (101)
34 COG0825 AccA Acetyl-CoA carbox 28.6 1E+02 0.0022 29.0 4.7 46 5-58 7-52 (317)
35 smart00718 DM4_12 DM4/DM12 fam 26.4 55 0.0012 25.1 2.2 31 126-163 6-37 (95)
36 KOG0642 Cell-cycle nuclear pro 25.9 77 0.0017 32.1 3.6 45 6-55 40-84 (577)
37 COG3426 Butyrate kinase [Energ 25.3 64 0.0014 30.4 2.8 77 128-204 234-341 (358)
38 PF01381 HTH_3: Helix-turn-hel 24.9 97 0.0021 20.2 3.0 30 180-209 23-52 (55)
39 KOG4809 Rab6 GTPase-interactin 24.2 1.7E+02 0.0038 29.8 5.7 49 10-61 362-415 (654)
40 COG5481 Uncharacterized conser 23.5 2.8E+02 0.0061 19.9 5.1 46 2-49 13-61 (67)
41 PF10224 DUF2205: Predicted co 23.2 1.8E+02 0.0039 21.8 4.4 30 7-48 23-52 (80)
42 KOG4015 Fatty acid-binding pro 22.5 1.9E+02 0.0041 23.9 4.8 39 176-221 14-52 (133)
43 PF02542 YgbB: YgbB family; I 22.1 58 0.0013 27.6 1.8 19 148-166 34-52 (157)
44 PF03255 ACCA: Acetyl co-enzym 21.0 11 0.00024 31.6 -2.8 39 5-51 5-43 (145)
45 PRK10780 periplasmic chaperone 20.7 4.9E+02 0.011 21.5 7.4 16 45-60 106-121 (165)
46 KOG4345 NF-kappa B regulator A 20.3 46 0.00099 34.6 0.9 53 197-255 225-289 (774)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-64 Score=453.12 Aligned_cols=248 Identities=43% Similarity=0.731 Sum_probs=209.1
Q ss_pred CcchhHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCcchhhhh
Q 025074 1 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGN--EKSNLDNLVK 78 (258)
Q Consensus 1 l~~rHrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~El~~~~~~~~~~~--~~~~~~~~~~ 78 (258)
|++|||+|+|+||++||+|||+++||+| ++||+++.+|++||.+|++||..||..+...+..+. .+..+++++.
T Consensus 17 iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e~~~~s~l~ 92 (302)
T KOG2606|consen 17 ILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKENLIESVLS 92 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCccccchhhhhc
Confidence 5899999999999999999999999996 899999999999999999999999999986432111 1222455555
Q ss_pred hccccccccccCCCCCchhhhhHHHHHHHHHHHH-HHHHHHH--hcccCCchhHHHHHHHHhccCCceEEeecCCCchHH
Q 025074 79 AVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQ--SNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLY 155 (258)
Q Consensus 79 ~~~~~~~~~~~~~~~~~K~~~Rr~~r~~~~~~~~-~~i~~e~--~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLF 155 (258)
.++.+...+.++.|+.||++|||.+++..++.++ ++|.+++ ++.++.+.+|.+.+.+.|...||.+++||+||||||
T Consensus 93 ~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY 172 (302)
T KOG2606|consen 93 PIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDIPADGHCLY 172 (302)
T ss_pred ccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccCCCCchhhH
Confidence 5666666555555667888777776655555444 7887644 488999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC-C------------------Ccchhh----------hHhHHHHHHHhhcCCccCcHHHHHHHHHhhc
Q 025074 156 RAVEDQLAHLSGG-E------------------ESAQSQ----------VERFENYCKEVESTAAWGGELELRALTHCLR 206 (258)
Q Consensus 156 rAIa~QL~~~~~~-~------------------~f~~~~----------~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~ 206 (258)
+||+|||..++.. . +|-+|+ ..+|+.||+.|++|+.|||+|||.|||++|+
T Consensus 173 ~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~ 252 (302)
T KOG2606|consen 173 AAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQ 252 (302)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhc
Confidence 9999999987654 1 255553 3579999999999999999999999999999
Q ss_pred ccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 025074 207 KHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258 (258)
Q Consensus 207 ~~I~V~~~~~~~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p~ 258 (258)
+||+||+.++|++.||++|.. .+||.|+||+|+||||+|||||.|.
T Consensus 253 ~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~ 298 (302)
T KOG2606|consen 253 VPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL 298 (302)
T ss_pred cCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence 999999999999999999863 5899999999999999999999883
No 2
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-31 Score=235.88 Aligned_cols=242 Identities=18% Similarity=0.157 Sum_probs=188.7
Q ss_pred CcchhHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhh--hh
Q 025074 1 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNL--VK 78 (258)
Q Consensus 1 l~~rHrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~El~~~~~~~~~~~~~~~~~~~--~~ 78 (258)
++.+||.|.++||.+||.++|+++.|.+ +.| |+..|..|+..|..+|+-|+..+.....+.++.++.+++ ..
T Consensus 17 lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea~q~~~l~~~q 90 (306)
T COG5539 17 LTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEADQEDSLTPLQ 90 (306)
T ss_pred HHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhccCCCccCCCcc
Confidence 4679999999999999999999998875 333 999999999999999999999987533222221111111 11
Q ss_pred hcc------------ccccccc-cCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhcc----cCCchhHHHHHHHHhccCC
Q 025074 79 AVA------------GVTVISQ-HDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDEKLEKKLGPLG 141 (258)
Q Consensus 79 ~~~------------~~~~~~~-~~~~~~~K~~~Rr~~r~~~~~~~~~~i~~e~~~~----~~~r~~E~~~l~~~L~~~g 141 (258)
..+ +.+.... ..+....+.++||+.+..++.+....+++.++++ ++-...+...+...+..-+
T Consensus 91 ~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~ 170 (306)
T COG5539 91 NIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATW 170 (306)
T ss_pred cCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHh
Confidence 111 1111111 1234567999999999999999888888766555 4447788888899999999
Q ss_pred ceEEeecCCCchHHHHHHHHHhcCCCCC-------------C-------------cchhh--hHhHHHHHHHhhcCCccC
Q 025074 142 LTVNDIKPDGHCLYRAVEDQLAHLSGGE-------------E-------------SAQSQ--VERFENYCKEVESTAAWG 193 (258)
Q Consensus 142 L~i~~I~~DGnCLFrAIa~QL~~~~~~~-------------~-------------f~~~~--~~~~~~Y~~~m~~~~~WG 193 (258)
|.-.+++|||+|+|.+|++||..+.... + ||+.+ ...|++||+.|..++.||
T Consensus 171 i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~a~~g 250 (306)
T COG5539 171 IVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDASDG 250 (306)
T ss_pred hhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhccccccc
Confidence 9999999999999999999998764321 0 55544 478999999999999999
Q ss_pred cHHHHHHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 025074 194 GELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 256 (258)
Q Consensus 194 G~lEL~ALs~~l~~~I~V~~~~~~~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~ 256 (258)
+.+|++|||+.|++|+.++...+|.+.+++- +.+..+-+.|++|+|++| ||||+.
T Consensus 251 ~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c-------~~~~~~e~~~~~Ha~a~G-H~n~~~ 305 (306)
T COG5539 251 ITIEIQQLASLLKNPHYYTNTASPSIKCNIC-------GTGFVGEKDYYAHALATG-HYNFGE 305 (306)
T ss_pred chHHHHHHHHHhcCceEEeecCCceEEeecc-------ccccchhhHHHHHHHhhc-CccccC
Confidence 9999999999999999999999998877642 235568889999999999 999975
No 3
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.85 E-value=6.5e-22 Score=157.53 Aligned_cols=102 Identities=35% Similarity=0.640 Sum_probs=73.7
Q ss_pred cCCCchHHHHHHHHHhcC----CCCCC--------cch-hhhHhHHHHHH--HhhcCCccCcHHHHHHHHHhhcccEEEE
Q 025074 148 KPDGHCLYRAVEDQLAHL----SGGEE--------SAQ-SQVERFENYCK--EVESTAAWGGELELRALTHCLRKHIMIY 212 (258)
Q Consensus 148 ~~DGnCLFrAIa~QL~~~----~~~~~--------f~~-~~~~~~~~Y~~--~m~~~~~WGG~lEL~ALs~~l~~~I~V~ 212 (258)
|||||||||||++||+.. ...+. +-. .-...|..|+. .|.++++|||++||.|||++|+++|+||
T Consensus 1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wg~~~el~a~a~~~~~~I~v~ 80 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGDKMSKPGTWGGEIELQALANVLNRPIIVY 80 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHHHHTSTTSHEEHHHHHHHHHHHTSEEEEE
T ss_pred CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccccCcHHHHHHHHHHhCCeEEEE
Confidence 799999999999999944 32221 111 11234555554 5899999999999999999999999999
Q ss_pred eCCCCceE----ecCCcCCCCCCCCCCeEEEEeccCCCCCCCcc
Q 025074 213 SGSFPDVE----MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY 252 (258)
Q Consensus 213 ~~~~~~~~----ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHY 252 (258)
+...+... +...+ .+....++|+|+|+.|.|..|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 81 SSSDGDNVVFIKFTGKY---PPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp CETTTBEEEEEEESCEE---STTTTTTSEEEEEETEEEEETTEE
T ss_pred EcCCCCccceeeecCcc---ccCCCCCeEEEEEcCCccCCCCCC
Confidence 87654322 22211 123457899999999999999999
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.7e-16 Score=138.04 Aligned_cols=104 Identities=19% Similarity=0.380 Sum_probs=84.0
Q ss_pred CceEEeecCCCchHHHHHHHHHhcCCCCCC-----------------cch-hhhHhHHHHHHHhhcCCccCcHHHHHHHH
Q 025074 141 GLTVNDIKPDGHCLYRAVEDQLAHLSGGEE-----------------SAQ-SQVERFENYCKEVESTAAWGGELELRALT 202 (258)
Q Consensus 141 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~-----------------f~~-~~~~~~~~Y~~~m~~~~~WGG~lEL~ALs 202 (258)
-|..+.||.|++|||+||+.-|...-.... |.+ +++.+-.+||.+|.+...|||.|||..||
T Consensus 109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS 188 (307)
T KOG3288|consen 109 VLSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILS 188 (307)
T ss_pred eeEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeeh
Confidence 367789999999999999999887543321 333 24677899999999999999999999999
Q ss_pred HhhcccEEEEeCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 025074 203 HCLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 256 (258)
Q Consensus 203 ~~l~~~I~V~~~~~~~~-~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~ 256 (258)
+.|+|.|.|++.....+ .||++- .....+.|.|. |.|||++.
T Consensus 189 ~~ygveI~vvDiqt~rid~fged~------~~~~rv~llyd------GIHYD~l~ 231 (307)
T KOG3288|consen 189 DYYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLYD------GIHYDPLA 231 (307)
T ss_pred hhhceeEEEEecceeeehhcCCCC------CCCceEEEEec------ccccChhh
Confidence 99999999999776555 466542 23568999998 89999874
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.36 E-value=7.5e-13 Score=118.41 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=52.4
Q ss_pred cchhhh----HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCC--ceEecC-CcCCCCCCCCCCeEEEEec
Q 025074 171 SAQSQV----ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP--DVEMGK-EYSNGGSDSSGSSIILSYH 242 (258)
Q Consensus 171 f~~~~~----~~~~~Y~~~-m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~--~~~ig~-~~~~~~~~~~~~~i~L~Y~ 242 (258)
|.+|+. .+|++||.. |...+.=++++.|.|||.+|+++|.|+..++. ...++. .|. ++.++..+.|+|.|.
T Consensus 157 y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~-~~~~~~~~~i~LLyr 235 (244)
T PF10275_consen 157 YEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP-PDNESQEPQITLLYR 235 (244)
T ss_dssp HGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES--SSTTSS-SEEEEEE
T ss_pred HhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC-CccCCCCCEEEEEEc
Confidence 555654 679999974 88889999999999999999999999987754 111110 111 001245789999999
Q ss_pred cCCCCCCCccccccc
Q 025074 243 RHAFGLGEHYNSVIP 257 (258)
Q Consensus 243 ~h~y~lGeHYnSv~p 257 (258)
. .|||-++|
T Consensus 236 p------gHYdIly~ 244 (244)
T PF10275_consen 236 P------GHYDILYP 244 (244)
T ss_dssp T------BEEEEEEE
T ss_pred C------CccccccC
Confidence 5 69999987
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=3.3e-11 Score=105.89 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=60.1
Q ss_pred cchhhh--HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce-EecC-CcCCCCCCCCCCeEEEEeccCC
Q 025074 171 SAQSQV--ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMGK-EYSNGGSDSSGSSIILSYHRHA 245 (258)
Q Consensus 171 f~~~~~--~~~~~Y~~~-m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~-~ig~-~~~~~~~~~~~~~i~L~Y~~h~ 245 (258)
|.+|++ .+...||.. |.....-.|+|+|.|||+++++.|.|...+...- ..+. .|. ....|.|.|.|..
T Consensus 174 y~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp----e~s~P~I~LLYrp-- 247 (256)
T KOG3991|consen 174 YQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP----EASAPEIYLLYRP-- 247 (256)
T ss_pred hhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc----cccCceEEEEecC--
Confidence 566664 578999995 7777788999999999999999999987765332 2332 232 3568899999984
Q ss_pred CCCCCcccccccC
Q 025074 246 FGLGEHYNSVIPI 258 (258)
Q Consensus 246 y~lGeHYnSv~p~ 258 (258)
.|||-++|.
T Consensus 248 ----GHYdilY~~ 256 (256)
T KOG3991|consen 248 ----GHYDILYKK 256 (256)
T ss_pred ----CccccccCC
Confidence 899999983
No 7
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2e-11 Score=115.24 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=84.9
Q ss_pred HHHHHHhccCCceEEeecCCCchHHHHHHHHHhcCCCCC----------------CcchhhhHhHHHHHHHhhcCCccCc
Q 025074 131 EKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQSQVERFENYCKEVESTAAWGG 194 (258)
Q Consensus 131 ~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~f~~~~~~~~~~Y~~~m~~~~~WGG 194 (258)
..+...+...|+.+..|..||+|+|||++||+++....+ .|..|+.++|..|+..++..+.||.
T Consensus 207 ~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gn 286 (371)
T KOG2605|consen 207 ERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGN 286 (371)
T ss_pred HHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcc
Confidence 334445578899999999999999999999999965443 1777888999999999999999999
Q ss_pred HHHHHHHHH---hhcccEEEEeCCCCceE-ecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 025074 195 ELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257 (258)
Q Consensus 195 ~lEL~ALs~---~l~~~I~V~~~~~~~~~-ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p 257 (258)
++|++|+|. ....++.+.+...+.++ +.+.+. .+...+++.| ..-.||+.+++
T Consensus 287 hie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n~-----~~~~h~~~~~~ 343 (371)
T KOG2605|consen 287 HIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYNF-----WVEVHYNTARH 343 (371)
T ss_pred hHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhcc-----cchhhhhhccc
Confidence 999999996 44455555555555543 322221 1122233333 34699999875
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=3.9e-06 Score=76.46 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCCchHHHHHHHHHhcCCCC--------------CCcchhh-hHhHHHHHHHhhcCCccC-cHHHHHHHHHhhcccEEEE
Q 025074 149 PDGHCLYRAVEDQLAHLSGG--------------EESAQSQ-VERFENYCKEVESTAAWG-GELELRALTHCLRKHIMIY 212 (258)
Q Consensus 149 ~DGnCLFrAIa~QL~~~~~~--------------~~f~~~~-~~~~~~Y~~~m~~~~~WG-G~lEL~ALs~~l~~~I~V~ 212 (258)
+|..|+|++++..|+..... ..|.+.+ +.+--.||.++.....|| |.+||.+||+.|++.|+|+
T Consensus 119 ~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~V 198 (306)
T COG5539 119 DDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVV 198 (306)
T ss_pred CchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeee
Confidence 67899999999888763211 1154443 456789999999999999 9999999999999999999
Q ss_pred eCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 025074 213 SGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 256 (258)
Q Consensus 213 ~~~~~~~-~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~ 256 (258)
..+.... .+++. .....+.+.|. |.|||+..
T Consensus 199 dv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t 230 (306)
T COG5539 199 DVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET 230 (306)
T ss_pred ecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence 9885433 34432 11235677776 89999753
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=87.53 E-value=0.54 Score=36.22 Aligned_cols=58 Identities=16% Similarity=0.320 Sum_probs=44.9
Q ss_pred ecCCCchHHHHHHHHHhcCCCCCCcchh---h---hHhHHHHHHHhh--cCCccCcHHHHHHHHHhhcccEEEE
Q 025074 147 IKPDGHCLYRAVEDQLAHLSGGEESAQS---Q---VERFENYCKEVE--STAAWGGELELRALTHCLRKHIMIY 212 (258)
Q Consensus 147 I~~DGnCLFrAIa~QL~~~~~~~~f~~~---~---~~~~~~Y~~~m~--~~~~WGG~lEL~ALs~~l~~~I~V~ 212 (258)
|..|+|||.-||+..|... |+.. + -.++..||..++ .+.+|-+ -..+|+.+++.|.|-
T Consensus 3 ~sR~NNCLVVAis~~L~~T-----~e~l~~~M~An~~~i~~y~~W~r~~~~STW~D---C~mFA~~LkVsm~vk 68 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVT-----LEKLDNLMQANVSTIKKYHTWLRKKRPSTWDD---CRMFADALKVSMQVK 68 (104)
T ss_pred ccCCCCeEeehHHHHhcch-----HHHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH---HHHHHHhheeEEEEE
Confidence 5679999999999999653 4432 1 257899999876 4789964 568999999998873
No 10
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=78.56 E-value=2.3 Score=33.72 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=39.8
Q ss_pred ecCCCchHHHHHHHHHhcCCCCCCcchhhhHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEE
Q 025074 147 IKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIY 212 (258)
Q Consensus 147 I~~DGnCLFrAIa~QL~~~~~~~~f~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~ 212 (258)
=|+||+|=+|+|+.-++.--+.+ |.. .|...-+.+..|.++--|.=+=..++.|+.+.
T Consensus 4 PP~DG~CG~H~i~aI~n~m~~~~-~t~-------~l~~~~r~~d~W~~dedl~~~iq~l~lPat~~ 61 (108)
T PF05412_consen 4 PPGDGSCGWHCIAAIMNHMMGGE-FTT-------PLPQRNRPSDDWADDEDLYQVIQSLRLPATLD 61 (108)
T ss_pred CCCCCchHHHHHHHHHHHhhccC-CCc-------cccccCCChHHccChHHHHHHHHHccCceecc
Confidence 48899999999998887532221 322 23333455778888888877777778888774
No 11
>PF14282 FlxA: FlxA-like protein
Probab=75.27 E-value=15 Score=28.79 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025074 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60 (258)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~El~~~ 60 (258)
=.+.++.|+.+|..+.-...- |-..++.+.+.+..+|..|++.|...+.+.-..-
T Consensus 24 L~~Qi~~Lq~ql~~l~~~~~~-~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 24 LQKQIKQLQEQLQELSQDSDL-DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHcccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888887777753211 2123356779999999999999998887776654
No 12
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=72.60 E-value=8.7 Score=33.07 Aligned_cols=45 Identities=38% Similarity=0.462 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHH
Q 025074 2 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 53 (258)
Q Consensus 2 ~~rHrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh 53 (258)
|+-+++|...|..+|..|.+... ++.++.++.++..|+.||.+.-
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in-------~~~k~~~n~~i~slk~EL~d~i 151 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEIN-------KNKKKDLNEEIESLKSELNDLI 151 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhHHHHHHHHHHHH
Confidence 45678999999999999998777 3666889999999999998754
No 13
>PRK09784 hypothetical protein; Provisional
Probab=62.52 E-value=4.3 Score=37.09 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred hccCCceEEeecCCCchHHHHHH
Q 025074 137 LGPLGLTVNDIKPDGHCLYRAVE 159 (258)
Q Consensus 137 L~~~gL~i~~I~~DGnCLFrAIa 159 (258)
-..+||.-.+|.|||-||.|||.
T Consensus 195 n~~~glkyapvdgdgycllrail 217 (417)
T PRK09784 195 NKTYGLKYAPVDGDGYCLLRAIL 217 (417)
T ss_pred hhhhCceecccCCCchhHHHHHH
Confidence 35789999999999999999986
No 14
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=59.25 E-value=60 Score=25.72 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=50.8
Q ss_pred CCCchHHHHHHHHHhcCCCCCCcchhhhHhHHHHHHHhhc--------CCccCc-HHHHHHHHHhhcccEEEEeCCCCce
Q 025074 149 PDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVES--------TAAWGG-ELELRALTHCLRKHIMIYSGSFPDV 219 (258)
Q Consensus 149 ~DGnCLFrAIa~QL~~~~~~~~f~~~~~~~~~~Y~~~m~~--------~~~WGG-~lEL~ALs~~l~~~I~V~~~~~~~~ 219 (258)
|.-+||.-||+.|+.... +++..++..|-- -...|= .-.+.|||..|+....|+...+. +
T Consensus 1 P~~~CLL~A~s~at~~~~----------~~LW~~L~~~lPDSlL~n~ei~~~GLSTDhltaLa~~~~~~~~~hs~~~~-~ 69 (104)
T PF05381_consen 1 PALDCLLVAISQATSISP----------ETLWATLCEILPDSLLDNPEIRTLGLSTDHLTALAYRYHFQCTFHSDHGV-L 69 (104)
T ss_pred CCcceeHHhhhhhhCCCH----------HHHHHHHHHhCchhhcCchhhhhcCCcHHHHHHHHHHHheEEEEEcCCce-E
Confidence 456899999999986421 122222222111 112332 23578999999999999876654 5
Q ss_pred EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccc
Q 025074 220 EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 254 (258)
Q Consensus 220 ~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnS 254 (258)
.+|..- ....+.|.|.. |--.||..
T Consensus 70 ~~Gi~~-------as~~~~I~ht~---G~p~HFs~ 94 (104)
T PF05381_consen 70 HYGIKD-------ASTVFTITHTP---GPPGHFSL 94 (104)
T ss_pred EeecCC-------CceEEEEEeCC---CCCCcccc
Confidence 687542 24556666554 33478865
No 15
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=58.24 E-value=28 Score=28.55 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 025074 7 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 55 (258)
Q Consensus 7 kE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~ 55 (258)
-|+.+|+++|..|--... .++..++.+...|..||..|++--..
T Consensus 25 iERaEmkarIa~LEGE~r-----~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERR-----GQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999864333 45688899999999999999865543
No 16
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=57.84 E-value=32 Score=25.65 Aligned_cols=43 Identities=19% Similarity=0.404 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 025074 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 54 (258)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~ 54 (258)
.+-|..+|++....|..+.. +.+|+.+..++..|-..|+.+..
T Consensus 29 m~~e~~~L~~~~~~~d~s~~-------~~~R~~L~~~l~~lv~~mE~K~d 71 (79)
T PF06657_consen 29 MKMEHQELQDEYKQMDPSLG-------RRKRRDLEQELEELVKRMEAKAD 71 (79)
T ss_pred HHHHHHHHHHHHHhcccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888877777665 57899999999999999988764
No 17
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.73 E-value=23 Score=33.50 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=31.4
Q ss_pred cchhHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHH
Q 025074 2 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 53 (258)
Q Consensus 2 ~~rHrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh 53 (258)
+.+|++.+++|...++..+++++ .+-.+.+++|+.++++|.
T Consensus 41 I~~QkkrLk~L~~sLk~~~~~~~-----------~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 41 ISHQKKRLKELKKSLKRCKKSLS-----------AEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC-----------hhHHHHHHHHHHHHHHHH
Confidence 46789999999998888876644 255677788888888876
No 18
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.34 E-value=42 Score=28.67 Aligned_cols=54 Identities=37% Similarity=0.521 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhcccCChhh---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025074 7 KEISQLQNKETELKKAAAKGSKAE---QKAKKKQVEEEISRLSAKLREKHAKELASLG 61 (258)
Q Consensus 7 kE~k~Lq~~i~~~kk~~~kg~k~~---~Kk~rK~v~~e~~~le~el~~rh~~El~~~~ 61 (258)
+++-.+++++..++|++....++. .+...+....|+++|..+|+. ...|+..|.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~-~~~~~~~Lk 181 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK-KEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 567778888888888775433211 113445678899999999988 566666665
No 19
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=42.01 E-value=13 Score=35.82 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=42.0
Q ss_pred cchhhhHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce
Q 025074 171 SAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDV 219 (258)
Q Consensus 171 f~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~ 219 (258)
|.+++..+|+.|+..+..|.+-|+.++|.+++.+|+.+...+.+.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~~~ 50 (371)
T KOG2605|consen 2 FREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGMGT 50 (371)
T ss_pred CccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCcccee
Confidence 3445568899999999999999999999999999999999988765433
No 20
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=39.09 E-value=1.8e+02 Score=30.44 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=6.0
Q ss_pred HHHHHhhcCCccCc
Q 025074 181 NYCKEVESTAAWGG 194 (258)
Q Consensus 181 ~Y~~~m~~~~~WGG 194 (258)
.||.. ++|+-||.
T Consensus 485 qF~~N-rRP~YyGT 497 (811)
T KOG4364|consen 485 QFDKN-RRPGYYGT 497 (811)
T ss_pred hhccc-cCCccccc
Confidence 34433 34565553
No 21
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=38.80 E-value=1.3e+02 Score=25.22 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025074 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 58 (258)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~El~ 58 (258)
--++.++|+.+|..+|+....-+-++.=.+=-.++.++++|+.||++..+.-..
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999887753332222222233677788888888876554443
No 22
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=38.22 E-value=1.2e+02 Score=23.14 Aligned_cols=44 Identities=36% Similarity=0.457 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHH
Q 025074 7 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 52 (258)
Q Consensus 7 kE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~r 52 (258)
.+++.+...|..++++. .+..+-+..-+.+.+++..||.++.+-
T Consensus 50 ~~rN~~sk~I~~~~~~~--~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 50 AERNELSKEIGKLKKAG--EDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHCHTT--CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555432 233333455577888888888776653
No 23
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=36.65 E-value=71 Score=30.13 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 025074 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 54 (258)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~ 54 (258)
-|.+.+|+.+|..|++.... ..-.+.++|..||..+.+...
T Consensus 9 e~~i~~l~~~~~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 49 (316)
T TIGR00513 9 EKPIAELEAKIESLRARSRD--------EDVDLSEEIERLEKRSVELTK 49 (316)
T ss_pred hHHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 47789999999999986652 234788999999998776543
No 24
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.32 E-value=1.2e+02 Score=25.37 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHhc
Q 025074 8 EISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR---EKHAKELASLG 61 (258)
Q Consensus 8 E~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~---~rh~~El~~~~ 61 (258)
++.+...+|..||+++. -=-++..+|+.|+.+.+ +.|+.+|..+.
T Consensus 35 ql~~~d~~i~~Lk~~~~---------d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 35 QLKEADKQIKDLKKSAK---------DNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHhccC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666433 12478888888887665 57777777654
No 25
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=34.27 E-value=75 Score=29.99 Aligned_cols=41 Identities=37% Similarity=0.478 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 025074 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 54 (258)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~ 54 (258)
-|.+.+|..+|..|++.+.. ..-.+.+||.+||..+++-.+
T Consensus 9 e~~i~~l~~~i~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 49 (319)
T PRK05724 9 EKPIAELEAKIEELRAVAED--------SDVDLSEEIERLEKKLEELTK 49 (319)
T ss_pred hhHHHHHHHHHHHHHhhhcc--------ccccHHHHHHHHHHHHHHHHH
Confidence 46789999999999986552 224789999999998776543
No 26
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=34.14 E-value=51 Score=23.36 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=24.3
Q ss_pred hHHHHHHHHhccCCceEEeecCCCchHHHHHHHHHhc
Q 025074 128 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH 164 (258)
Q Consensus 128 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~ 164 (258)
+|.+++...---.+..++-+-+-|.|-| +|.+|+..
T Consensus 2 IE~qai~AL~hL~~~ilfi~D~Se~CGy-sie~Q~~L 37 (58)
T PF06858_consen 2 IEMQAITALAHLADAILFIIDPSEQCGY-SIEEQLSL 37 (58)
T ss_dssp HHHHHHHGGGGT-SEEEEEE-TT-TTSS--HHHHHHH
T ss_pred hhHHHHHHHHhhcceEEEEEcCCCCCCC-CHHHHHHH
Confidence 5677776555556677888899999999 88888864
No 27
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.49 E-value=85 Score=22.61 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHH
Q 025074 2 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 49 (258)
Q Consensus 2 ~~rHrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el 49 (258)
+.||...++++..++..+.+.-...+ +.-+.++.++.+++..+
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e-----~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANE-----KDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 35788888888888888887665322 23467777777777654
No 28
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=32.98 E-value=91 Score=27.71 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=36.6
Q ss_pred ccCcHH----HHHHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 025074 191 AWGGEL----ELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257 (258)
Q Consensus 191 ~WGG~l----EL~ALs~~l~~~I~V~~~~~~~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p 257 (258)
.|||.- .+..+|+.+++|+.++..+-=. .++... ...+|.++.+... |.+|+|..|
T Consensus 5 ~wg~~~~~~~~~~~~a~~~~i~~~~~E~G~lR-~~~~~~------~~~~P~s~~~D~~----Gv~~~s~~~ 64 (269)
T PF05159_consen 5 VWGDKRPYHRAAIEVAKELGIPVIFFEDGFLR-SIGLGS------DGYPPDSLTIDPQ----GVNADSSLP 64 (269)
T ss_pred EECCCccHHHHHHHHHHHhCCCEEEEecCccc-cccccc------cCCCCeEEEECCC----CccCCCCCc
Confidence 588863 3456689999999999765311 122211 1245778877764 899998766
No 29
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=31.76 E-value=91 Score=30.66 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 025074 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 54 (258)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~ 54 (258)
-|.+.+|+.+|..|++.+.. ..-.+.+||.+||..+.+-..
T Consensus 79 e~pi~ele~ki~el~~~~~~--------~~~~~~~ei~~l~~~~~~~~~ 119 (431)
T PLN03230 79 EKPIVDLENRIDEVRELANK--------TGVDFSAQIAELEERYDQVRR 119 (431)
T ss_pred hhHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 46789999999999987652 235789999999998766543
No 30
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=31.42 E-value=1.3e+02 Score=22.53 Aligned_cols=20 Identities=45% Similarity=0.639 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 025074 33 AKKKQVEEEISRLSAKLREK 52 (258)
Q Consensus 33 k~rK~v~~e~~~le~el~~r 52 (258)
|-|..-.+||.+|-.+|+.|
T Consensus 57 kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 57 KMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666554
No 31
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=30.51 E-value=99 Score=29.25 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 025074 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 55 (258)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~ 55 (258)
-|.+.+|+.+|..|++....+ .-.+.+||.+|+..+.+...+
T Consensus 12 e~~i~el~~~i~~l~~~~~~~--------~~~~~~~i~~l~~~~~~~~~~ 53 (322)
T CHL00198 12 MKPLAELESQVEELSKLAPKN--------DKVINNKLKSFQRKLRILKKE 53 (322)
T ss_pred hhhHHHHHHHHHHHHhhhccc--------ccCHHHHHHHHHHHHHHHHHH
Confidence 477899999999999865421 247899999999988776544
No 32
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.11 E-value=1.2e+02 Score=29.18 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHH
Q 025074 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 51 (258)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~ 51 (258)
..++..|+.+|..+.....+..| .+++.++++++++.++.++.+
T Consensus 248 ~~~~~~~~~~i~~l~~~l~~~~k--~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 248 QEKLEKLEKEIEKLEEKLEKNPK--KKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 34566777777777765433333 256778888999988887765
No 33
>PF04874 Mak16: Mak16 protein C-terminal region; InterPro: IPR006958 The function of these proteins is unknown. The yeast orthologues have been implicated in cell cycle progression and biogenesis of 60S ribosomal subunits. The Schistosoma mansoni (Blood fluke) Mak16 has been shown to target protein transport to the nucleolus [].
Probab=28.56 E-value=1.2e+02 Score=23.82 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=18.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Q 025074 95 SKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEK 135 (258)
Q Consensus 95 ~K~~~Rr~~r~~~~~~~~~~i~~e~~~~~~~r~~E~~~l~~ 135 (258)
+|+..||+++..+.+...+++. +.+|.+.|.+
T Consensus 2 ~kK~eRRE~~RE~KAl~AA~le---------~~IEkELLeR 33 (101)
T PF04874_consen 2 KKKVERREKRREEKALIAAKLE---------KSIEKELLER 33 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 5666677766655555444444 5666665544
No 34
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=28.55 E-value=1e+02 Score=29.01 Aligned_cols=46 Identities=33% Similarity=0.422 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025074 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 58 (258)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~El~ 58 (258)
+-|...+|+++|..++.....+ .-.+.++|.+||..+.+--..--.
T Consensus 7 fEkpi~ele~kI~~l~~~~~~~--------~~~~~~eI~~Le~~~~~~~~~iy~ 52 (317)
T COG0825 7 FEKPIAELEAKIDELKALAEEN--------DVDLSDEIERLEKRLAELTKKIYS 52 (317)
T ss_pred hhhHHHHHHHHHHHHHhhcccc--------ccchHHHHHHHHhhHHHHhhhhhc
Confidence 5678899999999999888633 347999999999887765544333
No 35
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=26.37 E-value=55 Score=25.12 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=24.3
Q ss_pred chhHHHHHHHHhccCCceEEeecCCC-chHHHHHHHHHh
Q 025074 126 RTVEDEKLEKKLGPLGLTVNDIKPDG-HCLYRAVEDQLA 163 (258)
Q Consensus 126 r~~E~~~l~~~L~~~gL~i~~I~~DG-nCLFrAIa~QL~ 163 (258)
|..=.+.|...|...|+ || .|+.|||-..-.
T Consensus 6 R~~lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~ 37 (95)
T smart00718 6 RRLLYEALENLLDQLGF-------NGRACLLRAICESAQ 37 (95)
T ss_pred HHHHHHHHHHHHHHcCC-------CchhhHHHHHHHccc
Confidence 44556778888888887 77 999999987554
No 36
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=25.91 E-value=77 Score=32.09 Aligned_cols=45 Identities=29% Similarity=0.340 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 025074 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 55 (258)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~ 55 (258)
--|+-+||++|..|. |+.+.++--++.+...+..||-.|++.|+.
T Consensus 40 ElERaElqariAfLq-----gErk~qenlk~dl~rR~kmlE~~lkeerak 84 (577)
T KOG0642|consen 40 ELERAELQARIAFLQ-----GERKGQENLKMDLVRRIKMLEFALKEERAK 84 (577)
T ss_pred ehhhhhHHHHHHHHh-----cchhhhHHHHHHHHHHHhcccchhHHhhhh
Confidence 357889999999995 444455677889999999999999998864
No 37
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=25.32 E-value=64 Score=30.36 Aligned_cols=77 Identities=27% Similarity=0.285 Sum_probs=48.3
Q ss_pred hHHHHHHHHhccCCceEEe------------ecCCCch--HHHHHHHHHhcCC--------CCCC---------cchhhh
Q 025074 128 VEDEKLEKKLGPLGLTVND------------IKPDGHC--LYRAVEDQLAHLS--------GGEE---------SAQSQV 176 (258)
Q Consensus 128 ~E~~~l~~~L~~~gL~i~~------------I~~DGnC--LFrAIa~QL~~~~--------~~~~---------f~~~~~ 176 (258)
.+.+.+..+-..-||.-+- -.+|-.| -|.|+++|+..-- ...+ +...+.
T Consensus 234 t~~El~k~i~g~gG~~aylGT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~ 313 (358)
T COG3426 234 TEEELLKKITGKGGLVAYLGTNDAKEVERRIEQGDEKAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFV 313 (358)
T ss_pred cHHHHHHHhhcCCceEEEeccchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHH
Confidence 4455555555566665431 2345455 3789999986421 1111 222223
Q ss_pred HhHHHHHHHhhcCCccCcHHHHHHHHHh
Q 025074 177 ERFENYCKEVESTAAWGGELELRALTHC 204 (258)
Q Consensus 177 ~~~~~Y~~~m~~~~~WGG~lEL~ALs~~ 204 (258)
.-..+|+..+..--.+.|+.||.|||.-
T Consensus 314 ~~I~~~v~~iapv~v~PGE~EleALA~G 341 (358)
T COG3426 314 DAIEDRVSWIAPVIVYPGEDELEALAEG 341 (358)
T ss_pred HHHHHHHhhhcceEecCCchHHHHHHhh
Confidence 4578888888888899999999999863
No 38
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=24.89 E-value=97 Score=20.22 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=23.4
Q ss_pred HHHHHHhhcCCccCcHHHHHHHHHhhcccE
Q 025074 180 ENYCKEVESTAAWGGELELRALTHCLRKHI 209 (258)
Q Consensus 180 ~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I 209 (258)
..++.++.+...+=..-.+.+||.+|++++
T Consensus 23 ~~~i~~~~~g~~~~~~~~~~~ia~~l~~~~ 52 (55)
T PF01381_consen 23 RSTISRIENGKRNPSLDTLKKIAKALGVSP 52 (55)
T ss_dssp HHHHHHHHTTSSTSBHHHHHHHHHHHTSEH
T ss_pred cchhHHHhcCCCCCCHHHHHHHHHHHCCCH
Confidence 456666666677777888999999999885
No 39
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.16 E-value=1.7e+02 Score=29.78 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcccCChhhHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Q 025074 10 SQLQNKETELKKAAAKGSKAEQKAKKK-----QVEEEISRLSAKLREKHAKELASLG 61 (258)
Q Consensus 10 k~Lq~~i~~~kk~~~kg~k~~~Kk~rK-----~v~~e~~~le~el~~rh~~El~~~~ 61 (258)
++|+...++|+-+.-|-|+ +=+-- +-+++|..||+.|..-|..+..+.-
T Consensus 362 ~dlkehassLas~glk~ds---~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~ 415 (654)
T KOG4809|consen 362 IDLKEHASSLASAGLKRDS---KLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARM 415 (654)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 4455555555544444343 22222 3368999999999999999988753
No 40
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=23.48 E-value=2.8e+02 Score=19.88 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=31.7
Q ss_pred cchhHHHHHHHHHHHHHHHhhcccCCh---hhHhhhhHHHHHHHHHHHHHH
Q 025074 2 LSRHRKEISQLQNKETELKKAAAKGSK---AEQKAKKKQVEEEISRLSAKL 49 (258)
Q Consensus 2 ~~rHrkE~k~Lq~~i~~~kk~~~kg~k---~~~Kk~rK~v~~e~~~le~el 49 (258)
++|-|+|-+|+-+-|..|--..+ |- +-=||+|=.+.+++.+||..+
T Consensus 13 ~arLrqeH~D~DaaInAmi~~~c--D~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 13 LARLRQEHADFDAAINAMIATGC--DALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHhhHHHHHHHHHHhCC--cHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 47889999999888877754222 21 112466778899999988754
No 41
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.21 E-value=1.8e+02 Score=21.85 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHH
Q 025074 7 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 48 (258)
Q Consensus 7 kE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~e 48 (258)
++.++||..+..|---+ -.|..+|.+|+.|
T Consensus 23 ~ei~~LQ~sL~~L~~Rv------------e~Vk~E~~kL~~E 52 (80)
T PF10224_consen 23 QEILELQDSLEALSDRV------------EEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 44555555555554322 3677788877664
No 42
>KOG4015 consensus Fatty acid-binding protein FABP [Lipid transport and metabolism]
Probab=22.49 E-value=1.9e+02 Score=23.88 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=27.7
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM 221 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~~i 221 (258)
.+.|++|+..+ |=.+.++=+|...+ |+.++..++..+.|
T Consensus 14 SENFdeymk~l------GV~~~~Rk~a~~~k-p~~~i~~~G~~~~~ 52 (133)
T KOG4015|consen 14 SENFDEYLKAL------GVGWATRKIAKLAK-PVLEITQDGDKFTI 52 (133)
T ss_pred ccCHHHHHHhc------CCcHhHHHHHhhcC-CeEEEEEcCCEEEE
Confidence 47899999986 33456777888887 77777766654433
No 43
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=22.09 E-value=58 Score=27.63 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=14.6
Q ss_pred cCCCchHHHHHHHHHhcCC
Q 025074 148 KPDGHCLYRAVEDQLAHLS 166 (258)
Q Consensus 148 ~~DGnCLFrAIa~QL~~~~ 166 (258)
-+||+.+++||.|.|.+--
T Consensus 34 HSDgDVl~HAi~DAlLGA~ 52 (157)
T PF02542_consen 34 HSDGDVLLHAIIDALLGAA 52 (157)
T ss_dssp SSS--HHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHhc
Confidence 3899999999999998753
No 44
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=20.98 E-value=11 Score=31.60 Aligned_cols=39 Identities=36% Similarity=0.461 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHH
Q 025074 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 51 (258)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~ 51 (258)
+-+.+++|+.+|..|++.+. ...-.+.++|.+|+..+..
T Consensus 5 fEk~I~ele~kI~eL~~~~~--------~~~~d~~~ei~~Le~k~~~ 43 (145)
T PF03255_consen 5 FEKPIKELEEKIEELKKLAE--------EGGIDLSDEIASLEEKLEK 43 (145)
T ss_dssp CCHHHHHCCCCCC----------------------TCHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHh--------hcCCCHHHHHHHHHHHHHH
Confidence 45778999999999987766 2334788899999888764
No 45
>PRK10780 periplasmic chaperone; Provisional
Probab=20.70 E-value=4.9e+02 Score=21.54 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 025074 45 LSAKLREKHAKELASL 60 (258)
Q Consensus 45 le~el~~rh~~El~~~ 60 (258)
++.+|..|..+++..+
T Consensus 106 ~qq~~~~~~~e~~~~i 121 (165)
T PRK10780 106 FEQDRRRRSNEERNKI 121 (165)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 46
>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]
Probab=20.30 E-value=46 Score=34.60 Aligned_cols=53 Identities=23% Similarity=0.512 Sum_probs=32.7
Q ss_pred HHHHHHHhhcccEEEEeCCC----Cc-----eEecCCcCC---CCCCCCCCeEEEEeccCCCCCCCccccc
Q 025074 197 ELRALTHCLRKHIMIYSGSF----PD-----VEMGKEYSN---GGSDSSGSSIILSYHRHAFGLGEHYNSV 255 (258)
Q Consensus 197 EL~ALs~~l~~~I~V~~~~~----~~-----~~ig~~~~~---~~~~~~~~~i~L~Y~~h~y~lGeHYnSv 255 (258)
-|..|++++++||+|+...+ +. +.+|..|.. ........||.|+|..+ |+..+
T Consensus 225 hifvl~~ilRrpivvvsd~mlR~s~~~sfap~~~ggiylpLe~p~~~c~r~pLvl~yd~~------hf~~l 289 (774)
T KOG4345|consen 225 HIFVLAHILRRPIVVVSDTMLRDSGGESFAPIPVGGIYLPLEVPAQECHRSPLVLAYDQA------HFSAL 289 (774)
T ss_pred HHHHHHHHhhCCeeEecccccccCCCcccccCccCceEEeccCchhhcccchhhhhhHhh------hhhhh
Confidence 47889999999999997543 11 223333321 11233456888999874 66554
Done!