Query 025074
Match_columns 258
No_of_seqs 209 out of 967
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 3.9E-36 1.3E-40 257.8 6.0 130 117-257 34-181 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 3.1E-31 1E-35 231.9 9.2 106 138-257 16-139 (212)
3 3phx_A RNA-directed RNA polyme 99.9 3.9E-28 1.3E-32 208.1 9.4 105 142-258 31-160 (185)
4 3phu_A RNA-directed RNA polyme 99.9 4.3E-28 1.5E-32 212.7 8.8 105 142-258 31-160 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 4.4E-22 1.5E-26 176.2 8.2 78 171-258 150-231 (234)
6 2zfy_A Ubiquitin thioesterase 99.8 7.6E-21 2.6E-25 168.3 8.7 77 171-257 153-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.7 2.3E-18 8E-23 155.7 6.1 81 171-258 188-274 (284)
8 4ddg_A Ubiquitin-conjugating e 99.7 3.1E-17 1.1E-21 155.2 10.5 77 171-257 318-399 (399)
9 3dkb_A Tumor necrosis factor, 98.4 8.1E-07 2.8E-11 82.2 10.2 112 140-257 110-282 (390)
10 3zrh_A Ubiquitin thioesterase 98.3 1.1E-06 3.6E-11 82.7 8.6 111 141-257 188-348 (454)
11 3twe_A Alpha4H; unknown functi 46.5 17 0.00056 20.5 2.5 17 6-22 7-23 (27)
12 3he5_B Synzip2; heterodimeric 39.7 62 0.0021 20.7 4.7 13 37-49 35-47 (52)
13 1mdc_A Insect fatty acid bindi 38.4 45 0.0016 25.9 4.9 37 176-219 13-49 (132)
14 4a5u_A RNA replicase polyprote 35.9 1.1E+02 0.0039 24.8 7.0 90 145-256 57-155 (160)
15 1gmj_A ATPase inhibitor; coile 35.3 23 0.00079 25.9 2.5 21 40-61 58-78 (84)
16 3azd_A Short alpha-tropomyosin 32.8 12 0.00042 23.0 0.6 29 9-49 6-34 (37)
17 1ftp_A Muscle fatty acid bindi 31.4 93 0.0032 24.0 5.7 37 176-218 14-50 (133)
18 1lpj_A Retinol-binding protein 30.2 68 0.0023 24.8 4.7 34 176-215 13-46 (133)
19 3ppt_A Sodium-calcium exchange 30.0 90 0.0031 24.1 5.4 34 176-215 13-46 (133)
20 1ci6_A Transcription factor AT 29.0 1.1E+02 0.0036 20.7 5.0 34 5-50 21-54 (63)
21 1vyf_A SM14, 14 kDa fatty acid 28.8 75 0.0026 24.6 4.8 34 176-215 15-48 (135)
22 2rcq_A CRBP-II, retinol-bindin 28.4 82 0.0028 24.7 5.0 34 176-215 17-50 (141)
23 3viq_B Mating-type switching p 28.4 44 0.0015 24.4 3.0 30 8-49 2-31 (85)
24 2xu6_A MDV1 coiled coil; prote 28.2 97 0.0033 21.9 4.7 30 7-48 21-50 (72)
25 1mvg_A Liver basic fatty acid 27.3 84 0.0029 24.0 4.8 37 176-219 11-47 (125)
26 1p6p_A Fatty acid-binding prot 26.6 86 0.0029 23.9 4.7 34 176-215 11-44 (125)
27 1o8v_A Fatty acid binding prot 26.6 1.2E+02 0.004 23.5 5.5 32 176-213 14-45 (134)
28 1eal_A Gastrotropin, ileal lip 25.8 82 0.0028 24.1 4.4 39 176-221 11-49 (127)
29 1b56_A Fatty acid binding prot 25.8 1.2E+02 0.0042 23.3 5.5 34 176-215 16-49 (135)
30 3bas_A Myosin heavy chain, str 25.6 1.5E+02 0.0051 21.3 5.6 48 3-55 10-57 (89)
31 3pzp_A DNA polymerase kappa; D 23.9 63 0.0021 30.8 4.1 72 91-162 32-108 (517)
32 3q8j_A Asteropsin A, ABU8-1; c 23.8 12 0.0004 22.5 -0.7 17 139-155 20-36 (37)
33 1crb_A Cellular retinol bindin 23.5 1.1E+02 0.0039 23.5 4.9 34 176-215 13-46 (134)
34 1l8d_A DNA double-strand break 23.3 97 0.0033 22.7 4.3 35 4-50 68-102 (112)
35 1ifc_A Intestinal fatty acid b 23.2 1.2E+02 0.004 23.4 4.9 34 176-215 12-45 (132)
36 2qo4_A Liver-basic fatty acid 22.7 72 0.0025 24.4 3.5 34 176-215 12-45 (126)
37 3hnw_A Uncharacterized protein 21.6 1.9E+02 0.0066 22.6 5.9 15 36-50 120-134 (138)
38 1jad_A PLC-beta, phospholipase 21.1 2.5E+02 0.0087 24.4 7.0 57 3-61 130-209 (251)
39 4a1y_A Myelin P2 protein; tran 20.8 1.3E+02 0.0043 23.3 4.6 34 176-215 15-48 (133)
40 2g7b_A Cellular retinoic acid- 20.7 1.4E+02 0.0048 23.0 4.9 35 176-217 12-48 (137)
41 3i00_A HIP-I, huntingtin-inter 20.5 2E+02 0.0068 22.1 5.7 40 6-53 21-60 (120)
42 2f73_A L-FABP, fatty acid-bind 20.4 1E+02 0.0035 24.4 4.1 34 176-215 34-67 (149)
43 2dgc_A Protein (GCN4); basic d 20.1 1.2E+02 0.0041 20.5 3.9 10 10-19 33-42 (63)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=3.9e-36 Score=257.80 Aligned_cols=130 Identities=25% Similarity=0.362 Sum_probs=93.3
Q ss_pred HHHhcccCCchhHHHHHHHHhccCCceEEeecCCCchHHHHHHHHHhcCCCCC----------------CcchhhhHhHH
Q 025074 117 EEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQSQVERFE 180 (258)
Q Consensus 117 ~e~~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~f~~~~~~~~~ 180 (258)
.|+...++.+..|..-+...|+.+||.++.||+|||||||||++||++.+..+ .|.+|+.++|+
T Consensus 34 ~~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e 113 (185)
T 3pfy_A 34 IEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFT 113 (185)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----
T ss_pred HHhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34555566689999888888899999999999999999999999999875443 28889999999
Q ss_pred HHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe--cCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 025074 181 NYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM--GKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257 (258)
Q Consensus 181 ~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~~i--g~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p 257 (258)
+||.+|+++++|||+|||+|||++|+++|+||+.+++++.+ |.+. ...++|+|+||+ |+|||||++
T Consensus 114 ~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~Y~~-----~~HYnSv~~ 181 (185)
T 3pfy_A 114 TYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVSYHR-----NIHYNSVVN 181 (185)
T ss_dssp ------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEEEET-----TTEEEEEEC
T ss_pred HHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEEECC-----CCCcccccC
Confidence 99999999999999999999999999999999988765543 3222 237899999998 699999986
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.97 E-value=3.1e-31 Score=231.88 Aligned_cols=106 Identities=18% Similarity=0.334 Sum_probs=91.0
Q ss_pred ccCCceEEeecCCCchHHHHHHHHHhcCCCCC----------------Ccc-hhhhHhHHHHHHHhhcCCccCcHHHHHH
Q 025074 138 GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESA-QSQVERFENYCKEVESTAAWGGELELRA 200 (258)
Q Consensus 138 ~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~f~-~~~~~~~~~Y~~~m~~~~~WGG~lEL~A 200 (258)
...||.+++||+|||||||||++|| +....+ .|. .+++.+|++||.+|+++++|||+|||+|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A 94 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI 94 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence 4458999999999999999999999 654443 275 4467899999999999999999999999
Q ss_pred HHHhhcccEEEEeCCC-CceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 025074 201 LTHCLRKHIMIYSGSF-PDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 257 (258)
Q Consensus 201 Ls~~l~~~I~V~~~~~-~~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p 257 (258)
||++|+++|.||++++ +.+.||+++ ..++|+|+|+ |+|||||++
T Consensus 95 ls~~~~~~I~V~~~~~~~~~~~~~~~-------~~~~I~L~Y~------g~HYdsl~~ 139 (212)
T 3by4_A 95 ISDALAVAIYVVDIDAVKIEKFNEDK-------FDNYILILFN------GIHYDSLTM 139 (212)
T ss_dssp HHHHHTCEEEEEETTTTEEEEESTTT-------CSEEEEEEEC------SSCEEEEEE
T ss_pred HHHHHCCCEEEEECCCCCeEEeCCCC-------CCCeEEEEEc------CCcceEEec
Confidence 9999999999999874 556788754 2679999997 899999985
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.95 E-value=3.9e-28 Score=208.14 Aligned_cols=105 Identities=19% Similarity=0.347 Sum_probs=84.2
Q ss_pred ceEEeecCCCchHHHHHHHHHhcC-CCC-----CC--------------cchhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 025074 142 LTVNDIKPDGHCLYRAVEDQLAHL-SGG-----EE--------------SAQSQVERFENYCKEVESTAAWGGELELRAL 201 (258)
Q Consensus 142 L~i~~I~~DGnCLFrAIa~QL~~~-~~~-----~~--------------f~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AL 201 (258)
+.+..||+|||||||||++||++. +.. +. -+-+++.+|++||++|+++++|||++||+||
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~~~~~~~~~Y~~~m~~~~~WGg~iEL~Al 110 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML 110 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHHHHCCCHHHHHHHHTSTTCCCBHHHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhhhcCCCHHHHHHHhhCCCccCcHHHHHHH
Confidence 778889999999999999999986 332 21 1112357899999999999999999999999
Q ss_pred HHhhcccEEEEeCCCCc-----eEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 025074 202 THCLRKHIMIYSGSFPD-----VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258 (258)
Q Consensus 202 s~~l~~~I~V~~~~~~~-----~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p~ 258 (258)
|++|+++|+|++++.+. +.+|++. ..++|+|+|+. |+|||||+|+
T Consensus 111 s~~~~v~I~V~~~d~~~~~~~i~~f~~~~-------~~~~I~L~Y~g-----~~HYdsl~~~ 160 (185)
T 3phx_A 111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL 160 (185)
T ss_dssp HHHHCCCEEEEEC--CCBCCEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred HHHHCCcEEEEEecCCCCceEEEEcCCCC-------CCCEEEEEECC-----CcCchhceEC
Confidence 99999999999977654 3566542 26899999983 5999999874
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.95 E-value=4.3e-28 Score=212.70 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=85.7
Q ss_pred ceEEeecCCCchHHHHHHHHHhcCC-CC-----CC--------c------chhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 025074 142 LTVNDIKPDGHCLYRAVEDQLAHLS-GG-----EE--------S------AQSQVERFENYCKEVESTAAWGGELELRAL 201 (258)
Q Consensus 142 L~i~~I~~DGnCLFrAIa~QL~~~~-~~-----~~--------f------~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AL 201 (258)
+.+..||||||||||||++||++.. .. +. | +.+++.+|++||++|+++++|||++||+||
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~~~~~~feeY~~~m~~~g~WGG~iEL~Al 110 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML 110 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHHHHCCCHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhhhcCCCHHHHHHHhcCCCccCCHHHHHHH
Confidence 7788999999999999999998863 22 11 0 112356899999999999999999999999
Q ss_pred HHhhcccEEEEeCCCC-----ceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 025074 202 THCLRKHIMIYSGSFP-----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 258 (258)
Q Consensus 202 s~~l~~~I~V~~~~~~-----~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~p~ 258 (258)
|++|+++|+||+++.+ .+.||++. ..++|+|+|+. |+|||||+|+
T Consensus 111 S~~~~v~I~V~~~d~~g~~~~i~~fge~~-------~~~~I~L~Y~g-----~~HYdSL~~~ 160 (219)
T 3phu_A 111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL 160 (219)
T ss_dssp HHHTTCCEEEEEESSSSBEEEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred HHHhCCCEEEEEecCCCCceeEEEecCCC-------CCCeEEEEECC-----CcCchhheEC
Confidence 9999999999988776 33566543 26899999984 5999999874
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.86 E-value=4.4e-22 Score=176.24 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=60.6
Q ss_pred cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe-cCCcCCCCCCCCCCeEEEEeccCCC
Q 025074 171 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM-GKEYSNGGSDSSGSSIILSYHRHAF 246 (258)
Q Consensus 171 f~~~~~~--~~~~Y~~-~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~~i-g~~~~~~~~~~~~~~i~L~Y~~h~y 246 (258)
|.+|+++ +|++||. .|+.+++|||+|||+|||++|++||.|++.+++...+ ...|. ++..+.|+|.|+
T Consensus 150 f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~----~~~~~~I~LlY~---- 221 (234)
T 1tff_A 150 FRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFP----EAATPSVYLLYK---- 221 (234)
T ss_dssp HGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCC----CCSSCSEEEEEE----
T ss_pred HhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCC----CCCCCeEEEEEC----
Confidence 6677654 8999999 7999999999999999999999999999988875222 22342 234678999998
Q ss_pred CCCCcccccccC
Q 025074 247 GLGEHYNSVIPI 258 (258)
Q Consensus 247 ~lGeHYnSv~p~ 258 (258)
++|||+|+|.
T Consensus 222 --pgHYdily~~ 231 (234)
T 1tff_A 222 --TSHYNILYAA 231 (234)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCCceecccC
Confidence 5699999984
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.83 E-value=7.6e-21 Score=168.26 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=61.0
Q ss_pred cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce--EecCCcCCCCCCCCCCeEEEEeccCC
Q 025074 171 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDV--EMGKEYSNGGSDSSGSSIILSYHRHA 245 (258)
Q Consensus 171 f~~~~~~--~~~~Y~~-~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~--~ig~~~~~~~~~~~~~~i~L~Y~~h~ 245 (258)
|.+|+++ +|++||. .|+.+++|||++||+|||++|++||.|++.+++.. ..+..|.. +..++|+|+|+.
T Consensus 153 f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~----~~~p~I~LlY~p-- 226 (234)
T 2zfy_A 153 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE----GSEPKVYLLYRP-- 226 (234)
T ss_dssp HGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST----TCCCSEEEEEET--
T ss_pred HhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC----CCCCeEEEEECC--
Confidence 6667653 8999997 69999999999999999999999999999887641 12233431 246789999984
Q ss_pred CCCCCccccccc
Q 025074 246 FGLGEHYNSVIP 257 (258)
Q Consensus 246 y~lGeHYnSv~p 257 (258)
+|||+|+|
T Consensus 227 ----gHYdiLy~ 234 (234)
T 2zfy_A 227 ----GHYDILYK 234 (234)
T ss_dssp ----TEEEEEEC
T ss_pred ----CCcccCCC
Confidence 59999998
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.73 E-value=2.3e-18 Score=155.74 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=61.1
Q ss_pred cchhhh--HhHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCc-eEecC-C-cCCCCCCCCCCeEEEEeccC
Q 025074 171 SAQSQV--ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPD-VEMGK-E-YSNGGSDSSGSSIILSYHRH 244 (258)
Q Consensus 171 f~~~~~--~~~~~Y~~-~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~-~~ig~-~-~~~~~~~~~~~~i~L~Y~~h 244 (258)
|.+|+. .++++||. .|+.+++|||+|+|+|||++|+++|.|+..++.. ..+.. . |.. +.....+.|+|.|.
T Consensus 188 f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~-~~~~~~p~I~LLYr-- 264 (284)
T 4dhi_B 188 YAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS-DDQQIAPEITLLYR-- 264 (284)
T ss_dssp HGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC-CCSCCCCSEEEEEE--
T ss_pred HHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC-CCCCCCCEEEEeec--
Confidence 777774 47999999 8999999999999999999999999999877531 11111 1 211 11123478999999
Q ss_pred CCCCCCcccccccC
Q 025074 245 AFGLGEHYNSVIPI 258 (258)
Q Consensus 245 ~y~lGeHYnSv~p~ 258 (258)
+.|||-|+|.
T Consensus 265 ----pgHYDILY~~ 274 (284)
T 4dhi_B 265 ----PGHYDVIYKK 274 (284)
T ss_dssp ----TTEEEEEEEC
T ss_pred ----CCCccccccC
Confidence 6899999983
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.70 E-value=3.1e-17 Score=155.18 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=59.8
Q ss_pred cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCC-ceEecC-CcCCCCCCCCCCeEEEEeccCC
Q 025074 171 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFP-DVEMGK-EYSNGGSDSSGSSIILSYHRHA 245 (258)
Q Consensus 171 f~~~~~~--~~~~Y~~-~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~-~~~ig~-~~~~~~~~~~~~~i~L~Y~~h~ 245 (258)
|.+|+++ ++++||. .|..+++||||++|.|||++|+++|.|+..++. ...+.. .|. .+..+.|+|.|..
T Consensus 318 f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~----~~~~~~I~LLYrP-- 391 (399)
T 4ddg_A 318 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP----EGSEPKVYLLYRP-- 391 (399)
T ss_dssp HGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT----TTCCCCCEEEEET--
T ss_pred HhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC----CCCCCEEEEEEcC--
Confidence 5666643 7999999 899999999999999999999999999986652 111211 121 2347889999985
Q ss_pred CCCCCccccccc
Q 025074 246 FGLGEHYNSVIP 257 (258)
Q Consensus 246 y~lGeHYnSv~p 257 (258)
.|||.|+|
T Consensus 392 ----gHYDiLY~ 399 (399)
T 4ddg_A 392 ----GHYDILYK 399 (399)
T ss_dssp ----BEEEEEEC
T ss_pred ----CccccCCC
Confidence 59999987
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.44 E-value=8.1e-07 Score=82.22 Aligned_cols=112 Identities=19% Similarity=0.330 Sum_probs=71.7
Q ss_pred CCceEEeecCCCchHHHHHHHHHhcCCCCCC----------------------------cchh-------h----hHhHH
Q 025074 140 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGEE----------------------------SAQS-------Q----VERFE 180 (258)
Q Consensus 140 ~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~----------------------------f~~~-------~----~~~~~ 180 (258)
.-|......||||||.+|++..+++.+.... +.+| + ..+|+
T Consensus 110 ~rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~ 189 (390)
T 3dkb_A 110 RKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWD 189 (390)
T ss_dssp CCEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHH
T ss_pred cceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHH
Confidence 3477789999999999999999999766531 0011 1 23444
Q ss_pred HHHHHhhcCCc-------c--CcHHHHHHHHHhhcccEEEEeCC-------CC---ceEecCCcCC---CCCCCCCCeEE
Q 025074 181 NYCKEVESTAA-------W--GGELELRALTHCLRKHIMIYSGS-------FP---DVEMGKEYSN---GGSDSSGSSII 238 (258)
Q Consensus 181 ~Y~~~m~~~~~-------W--GG~lEL~ALs~~l~~~I~V~~~~-------~~---~~~ig~~~~~---~~~~~~~~~i~ 238 (258)
.-+.....+.. . =-++-+.+||+++++||+||... |. ++.||.-|.. +.+.....||.
T Consensus 190 ~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~ 269 (390)
T 3dkb_A 190 NLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIV 269 (390)
T ss_dssp HHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEE
T ss_pred HHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceE
Confidence 44443332211 1 12788999999999999999532 11 1223322321 22334577999
Q ss_pred EEeccCCCCCCCccccccc
Q 025074 239 LSYHRHAFGLGEHYNSVIP 257 (258)
Q Consensus 239 L~Y~~h~y~lGeHYnSv~p 257 (258)
|+|.+ .||.++++
T Consensus 270 LgY~s------~HFsaLV~ 282 (390)
T 3dkb_A 270 LGYDS------HHFVPLVT 282 (390)
T ss_dssp EEECS------SCEEEEEE
T ss_pred EEecc------Cceeeeee
Confidence 99996 69999986
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.35 E-value=1.1e-06 Score=82.69 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=76.2
Q ss_pred CceEEeecCCCchHHHHHHHHHhcCCCCCC-------------------------------c-chh------hhHhHHHH
Q 025074 141 GLTVNDIKPDGHCLYRAVEDQLAHLSGGEE-------------------------------S-AQS------QVERFENY 182 (258)
Q Consensus 141 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~-------------------------------f-~~~------~~~~~~~Y 182 (258)
.|..-...||||||.+|++-.|++.+.... | -.| ...+|+.-
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i 267 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI 267 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence 367778999999999999999999765421 1 011 12456666
Q ss_pred HHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCC---------CceEecCCcCC---CCCCCCCCeEEEEeccCCCCCCC
Q 025074 183 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSF---------PDVEMGKEYSN---GGSDSSGSSIILSYHRHAFGLGE 250 (258)
Q Consensus 183 ~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~---------~~~~ig~~~~~---~~~~~~~~~i~L~Y~~h~y~lGe 250 (258)
+.-...++.==-++-+.+||+++++||+||.... +++.||.-|.. +++.....||.|+|.+ .
T Consensus 268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~------g 341 (454)
T 3zrh_A 268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR------G 341 (454)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET------T
T ss_pred HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc------c
Confidence 6656666665557889999999999999997532 11233322321 1223446899999996 5
Q ss_pred ccccccc
Q 025074 251 HYNSVIP 257 (258)
Q Consensus 251 HYnSv~p 257 (258)
||.++++
T Consensus 342 HFsaLV~ 348 (454)
T 3zrh_A 342 HFSALVA 348 (454)
T ss_dssp EEEEEEE
T ss_pred ceeeeee
Confidence 9999876
No 11
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.48 E-value=17 Score=20.46 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 025074 6 RKEISQLQNKETELKKA 22 (258)
Q Consensus 6 rkE~k~Lq~~i~~~kk~ 22 (258)
-||+.|||.++..++|.
T Consensus 7 ykeledlqerlrklrkk 23 (27)
T 3twe_A 7 YKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37899999998777653
No 12
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.73 E-value=62 Score=20.71 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q 025074 37 QVEEEISRLSAKL 49 (258)
Q Consensus 37 ~v~~e~~~le~el 49 (258)
.+.++|++||.|.
T Consensus 35 nlrdeiarlenev 47 (52)
T 3he5_B 35 NLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667777777765
No 13
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=38.43 E-value=45 Score=25.85 Aligned_cols=37 Identities=8% Similarity=-0.051 Sum_probs=25.4
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDV 219 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~ 219 (258)
.+.|++|+..|- =...++.++..+...+.|-+ ++..+
T Consensus 13 seNfdeylkalG------v~~~~rk~a~~~kp~~ei~~-~Gd~~ 49 (132)
T 1mdc_A 13 QENFDGFLKSAG------LSDDKIQALVSDKPTQKMEA-NGDSY 49 (132)
T ss_dssp EESHHHHHHTTT------CCHHHHHHHHHCCCEEEEEE-ETTEE
T ss_pred ccCHHHHHHHhC------CCHHHHhhhccCCceEEEEE-eCCEE
Confidence 368999999873 34688899988875555544 44433
No 14
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=35.93 E-value=1.1e+02 Score=24.82 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=55.6
Q ss_pred EeecCCCchHHHHHHHHHhcCCCCCCcchhhhHhHHHHHHHhhcC--------CccC-cHHHHHHHHHhhcccEEEEeCC
Q 025074 145 NDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVEST--------AAWG-GELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 145 ~~I~~DGnCLFrAIa~QL~~~~~~~~f~~~~~~~~~~Y~~~m~~~--------~~WG-G~lEL~ALs~~l~~~I~V~~~~ 215 (258)
..+| .-+||.-||+.|+.... +++.+++..|--+ .+.| +.-.+.|||..|+....|+...
T Consensus 57 ~P~P-~~~CLL~Ais~at~~s~----------~~LW~~Lc~~lPDSlL~n~ei~~~GLSTDhltaLa~~~~~~c~~hs~~ 125 (160)
T 4a5u_A 57 LPQP-TLNCLLSAVSDQTKVSE----------EHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDR 125 (160)
T ss_dssp CCCC-SSCHHHHHHHHHHCCCH----------HHHHHHHTTTSCGGGTSSHHHHHHCCCHHHHHHHHHHHTEEEEEEETT
T ss_pred CCCc-chhhhHHHHhhccCCCH----------HHHHHHHHHhCchhhcCchhhhhcCCcHHHHHHHHHHHheEEEEEcCC
Confidence 3455 48999999998885421 1222222222111 1222 1235789999999999999766
Q ss_pred CCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 025074 216 FPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 256 (258)
Q Consensus 216 ~~~~~ig~~~~~~~~~~~~~~i~L~Y~~h~y~lGeHYnSv~ 256 (258)
+ .+.+|-.- ....+.|.|.. |--.||.-..
T Consensus 126 ~-~~~~Gi~~-------as~~~~I~ht~---G~P~HFs~~~ 155 (160)
T 4a5u_A 126 G-PILFGPSD-------TIKRIDITHTT---GPPSHFSPGK 155 (160)
T ss_dssp E-EEEESCSS-------CSEEEEEEEEC---SSSCEEEESC
T ss_pred c-eEEeecCC-------CceEEEEEeCC---CCCCCccCCc
Confidence 5 45688642 25678888875 5568886543
No 15
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.28 E-value=23 Score=25.92 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 025074 40 EEISRLSAKLREKHAKELASLG 61 (258)
Q Consensus 40 ~e~~~le~el~~rh~~El~~~~ 61 (258)
++|.+||.++ +||+.-|..|.
T Consensus 58 ~ei~~le~~i-~rhk~~i~~l~ 78 (84)
T 1gmj_A 58 KEIERLQKEI-ERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHhh
Confidence 3456666666 55666666654
No 16
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=32.77 E-value=12 Score=23.05 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHH
Q 025074 9 ISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 49 (258)
Q Consensus 9 ~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el 49 (258)
...|+.||++|...+- .+.++...++.+|
T Consensus 6 i~avKkKiq~lq~q~d------------~aee~~~~~~~~l 34 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNY------------HLENEVARLKKLV 34 (37)
T ss_dssp CHHHHHHHHHHHHHTT------------TTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHh
Confidence 4567777777765444 4555555555544
No 17
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=31.41 E-value=93 Score=24.00 Aligned_cols=37 Identities=19% Similarity=0.044 Sum_probs=26.1
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCc
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD 218 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~ 218 (258)
.+.|++|+..|- -...++.++......+.|-+.++..
T Consensus 14 seNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~~Gd~ 50 (133)
T 1ftp_A 14 QTNFEEYMKAIG------VGAIERKAGLALSPVIELEILDGDK 50 (133)
T ss_dssp EESHHHHHHHTT------CCHHHHHHHTTCCCEEEEEECSSSE
T ss_pred ccCHHHHHHHhC------CCHHHHHHhhcCCceEEEEEcCCCE
Confidence 368999999873 3468889998887666665524443
No 18
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=30.23 E-value=68 Score=24.77 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=24.1
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|- -...++.++......+.|-+.+
T Consensus 13 seNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~G 46 (133)
T 1lpj_A 13 SDNFEGYMLALG------IDFATRKIAKLLKPQKVIEQNG 46 (133)
T ss_dssp EESHHHHHHHHT------CCHHHHHHHTTCCCEEEEEEET
T ss_pred CcCHHHHHHHhC------CCHHHHHHHHhCCCeEEEEEcC
Confidence 368999999983 3467888998887555554433
No 19
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=29.98 E-value=90 Score=24.14 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=24.0
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|- =...++-++...+..+.|-+.+
T Consensus 13 seNfdeymkalG------v~~~~rk~~~~~kp~~~I~~~G 46 (133)
T 3ppt_A 13 SENFDDYMKAVG------VGMVMRKMANAATPTQEIKIDG 46 (133)
T ss_dssp EESHHHHHHHHT------CCHHHHHHHHHCCCEEEEEEET
T ss_pred ccCHHHHHHHhC------CCHHHHhhhhcCCcEEEEEECC
Confidence 378999999873 3467888888887555555443
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.03 E-value=1.1e+02 Score=20.72 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHH
Q 025074 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 50 (258)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~ 50 (258)
.+.+..+|+.++..|+. ...++..+|+.|+.|+.
T Consensus 21 Kk~~~~~le~~~~~L~~------------~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 21 KRAEQEALTGECKELEK------------KNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 44556677777766653 33477777777777654
No 21
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=28.81 E-value=75 Score=24.61 Aligned_cols=34 Identities=6% Similarity=0.126 Sum_probs=24.2
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|- -...++.++......+.|-+.+
T Consensus 15 seNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~G 48 (135)
T 1vyf_A 15 SHNFDAVMSKLG------VSWATRQIGNTVTPTVTFTMDG 48 (135)
T ss_dssp EESHHHHHHHTT------CCHHHHHHHTTCCCEEEEEEET
T ss_pred CcCHHHHHHHcC------CCHHHHHhhccCCceEEEEEcC
Confidence 378999999873 3467888888887555554443
No 22
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=28.41 E-value=82 Score=24.68 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=24.4
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|- =...++.+|..+...+.|-+.+
T Consensus 17 seNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~G 50 (141)
T 2rcq_A 17 NENFEGYMKALD------IDFATRKIAVRLTQTKVIDQDG 50 (141)
T ss_dssp EESHHHHHHHTT------CCHHHHHHHTTCCCEEEEEEET
T ss_pred ccCHHHHHHHhC------CCHHHHHHhhcCCcEEEEEEeC
Confidence 478999999984 3467888998887555554443
No 23
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.36 E-value=44 Score=24.43 Aligned_cols=30 Identities=37% Similarity=0.436 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHH
Q 025074 8 EISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 49 (258)
Q Consensus 8 E~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el 49 (258)
|...|+++|..|+ ..+.++..+|..++++|
T Consensus 2 ~~~~L~~~i~~L~------------~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 2 EKSQLESRVHLLE------------QQKEQLESSLQDALAKL 31 (85)
T ss_dssp CHHHHHHHHHHHH------------HHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHh
Confidence 3557888888776 34457788888877654
No 24
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=28.22 E-value=97 Score=21.91 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHH
Q 025074 7 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 48 (258)
Q Consensus 7 kE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~e 48 (258)
-|.+++-.||..|+ ..|+-|-+.++.+|.+
T Consensus 21 sEI~EID~Ki~nL~------------~mR~ivldRlA~lEqd 50 (72)
T 2xu6_A 21 SEIRDIEVEVENLR------------QKKEKLLGKIANIEQN 50 (72)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhh
Confidence 47889999999886 5678899999988754
No 25
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=27.35 E-value=84 Score=24.01 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=25.1
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDV 219 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~ 219 (258)
.+.|++|+..|-- ...++.++..+...+.|-+ ++..+
T Consensus 11 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~-~Gd~~ 47 (125)
T 1mvg_A 11 QENYEEFLKALAL------PEDLIKMARDIKPIVEIQQ-KGDDF 47 (125)
T ss_dssp EESHHHHHHHSSS------CHHHHHHHHTCCCEEEEEE-ETTEE
T ss_pred ccCHHHHHHHcCC------CHHHHHhhccCCcEEEEEE-eCCEE
Confidence 3689999998743 4678888888875555544 44433
No 26
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=26.62 E-value=86 Score=23.93 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=23.8
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|-- ...++.++..+...+.|-+.+
T Consensus 11 seNfdeymkalGv------~~~~rk~a~~~kp~~ei~~~G 44 (125)
T 1p6p_A 11 QENYENFLRTVGL------PEDIIKVAKDVNPVIEIEQNG 44 (125)
T ss_dssp EESHHHHHHHHTC------CHHHHHHHTTCCCEEEEEECS
T ss_pred ccCHHHHHHHhCC------CHHHHHhhccCCcEEEEEEcC
Confidence 3689999999843 467888888886545444443
No 27
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=26.61 E-value=1.2e+02 Score=23.47 Aligned_cols=32 Identities=9% Similarity=0.305 Sum_probs=23.9
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEe
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYS 213 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~ 213 (258)
.+.|++|+..|- -...++.++......+.|-+
T Consensus 14 seNfdeylkalG------v~~~~rk~a~~~kp~~ei~~ 45 (134)
T 1o8v_A 14 SEGFDKIMERLG------VDFVTRKMGNLVKPNLIVTD 45 (134)
T ss_dssp EESHHHHHHHHT------CCHHHHHHHHHCCCEEEEEE
T ss_pred CcCHHHHHHHcC------CCHHHHHHhhcCCceEEEEE
Confidence 378999999983 34688889988875555555
No 28
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=25.77 E-value=82 Score=24.11 Aligned_cols=39 Identities=5% Similarity=0.042 Sum_probs=25.6
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM 221 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~~~~~~i 221 (258)
.+.|++|+..| |-...++.++..+...+.| ..++..+.|
T Consensus 11 seNfdeymkal------Gv~~~~rk~a~~~kp~~ei-~~~Gd~~~i 49 (127)
T 1eal_A 11 EKNYDEFMKRL------ALPSDAIDKARNLKIISEV-KQDGQNFTW 49 (127)
T ss_dssp ESCTTHHHHHH------TCCHHHHHHHTTCCEEEEE-EESSSEEEE
T ss_pred ccCHHHHHHHh------CCCHHHHHhhhcCCcEEEE-EEcCCEEEE
Confidence 36799999988 3346788888888644444 444444433
No 29
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=25.75 E-value=1.2e+02 Score=23.34 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=24.6
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|- -...++.++......+.|-+.+
T Consensus 16 seNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~G 49 (135)
T 1b56_A 16 SKGFDEYMKELG------VGIALRKMGAMAKPDCIITCDG 49 (135)
T ss_dssp CCSHHHHHHHHT------CCHHHHHHHHHCCCEEEEEEET
T ss_pred ccCHHHHHHHcC------CCHHHHHHhhcCCcEEEEEEcC
Confidence 378999999983 3467888888886666555543
No 30
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.60 E-value=1.5e+02 Score=21.28 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 025074 3 SRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 55 (258)
Q Consensus 3 ~rHrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh~~ 55 (258)
+|.-.|++.+...+..++....+.. +.|+++...+..|..+-..=+.+
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e-----~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTE-----RIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999998887433 67899999999998887766655
No 31
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=23.87 E-value=63 Score=30.84 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=43.8
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHHhcccCC--c--hhHHHHHHHHhc-cCCceEEeecCCCchHHHHHHHHH
Q 025074 91 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSD--R--TVEDEKLEKKLG-PLGLTVNDIKPDGHCLYRAVEDQL 162 (258)
Q Consensus 91 ~~~~~K~~~Rr~~r~~~~~~~~~~i~~e~~~~~~~--r--~~E~~~l~~~L~-~~gL~i~~I~~DGnCLFrAIa~QL 162 (258)
.++.||=.++..+|.++-.++.+++.+..+..... + ..+...+...|. .+.+...-+-=|-+|||.||....
T Consensus 32 ~s~gs~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~r~~~r~I~hiDmDaFYAsvE~~~ 108 (517)
T 3pzp_A 32 ATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRD 108 (517)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCCCSCCEEEEEESSHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhccCcCcEEEEEecCcHHHHHHHHh
Confidence 45667777777777777777788777665554332 1 122233434443 255554444558999999998544
No 32
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=23.75 E-value=12 Score=22.52 Aligned_cols=17 Identities=53% Similarity=0.905 Sum_probs=13.4
Q ss_pred cCCceEEeecCCCchHH
Q 025074 139 PLGLTVNDIKPDGHCLY 155 (258)
Q Consensus 139 ~~gL~i~~I~~DGnCLF 155 (258)
-+||.-..=.|||.|.|
T Consensus 20 glgltcipgnpdgtcyy 36 (37)
T 3q8j_A 20 GLGLTCIPGNPDGTCYY 36 (37)
T ss_dssp TSCEEEEECSSEEEEEE
T ss_pred CCCcEecCCCCCceEEe
Confidence 46777777788999975
No 33
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=23.55 E-value=1.1e+02 Score=23.52 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=24.6
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|- -...++.++..+...+.|-+.+
T Consensus 13 seNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~G 46 (134)
T 1crb_A 13 NENFEEYLRALD------VNVALRKIANLLKPDKEIVQDG 46 (134)
T ss_dssp EESHHHHHHTTT------CCHHHHHHHHHCCCEEEEEEET
T ss_pred CcCHHHHHHHcC------CCHHHHHHhhcCCceEEEEEcC
Confidence 378999999873 3468888888887666555543
No 34
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.28 E-value=97 Score=22.70 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHH
Q 025074 4 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 50 (258)
Q Consensus 4 rHrkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~ 50 (258)
.+..++.+|+.+|..++.... .+..++..|+.++.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~------------~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKS------------ELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 445566666666666654333 55556666666555
No 35
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=23.23 E-value=1.2e+02 Score=23.35 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=23.9
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|-- ...++.++......+.|-+.+
T Consensus 12 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~~G 45 (132)
T 1ifc_A 12 NENYEKFMEKMGI------NVVKRKLGAHDNLKLTITQEG 45 (132)
T ss_dssp EESHHHHHHHHTC------CHHHHHHHTTCCCEEEEEEET
T ss_pred ccCHHHHHHHcCC------CHHHHHHhccCCCeEEEEEeC
Confidence 3689999999843 467888888886555554443
No 36
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=22.73 E-value=72 Score=24.43 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=23.9
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|- =...++.++..++..+.|-+.+
T Consensus 12 seNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~G 45 (126)
T 2qo4_A 12 QENYEEFLRAIS------LPEEVIKLAKDVKPVTEIQQNG 45 (126)
T ss_dssp EESHHHHHHHTT------CCHHHHHHTTTCCCEEEEEEET
T ss_pred CcCHHHHHHHcC------CCHHHHHhhccCCceEEEEEeC
Confidence 368999999983 3467888888887555554433
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.61 E-value=1.9e+02 Score=22.56 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 025074 36 KQVEEEISRLSAKLR 50 (258)
Q Consensus 36 K~v~~e~~~le~el~ 50 (258)
..+..++.+||.+|+
T Consensus 120 ~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 120 NKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 38
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=21.10 E-value=2.5e+02 Score=24.35 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHH--------HHHHhhcccCChhhHhhhhHHH--------HHHHHHH-------HHHHHHHHHHHHHH
Q 025074 3 SRHRKEISQLQNKE--------TELKKAAAKGSKAEQKAKKKQV--------EEEISRL-------SAKLREKHAKELAS 59 (258)
Q Consensus 3 ~rHrkE~k~Lq~~i--------~~~kk~~~kg~k~~~Kk~rK~v--------~~e~~~l-------e~el~~rh~~El~~ 59 (258)
.+|-+|.|||+.+. +.++. -+ .+|+++=.+++++ -.++.+| +..|..+|.+-|..
T Consensus 130 ~~~ErE~KELkk~q~kks~e~i~e~~~-kt-K~K~e~Er~~rEin~s~ike~veerkrl~~kQ~k~qEkL~~~h~e~le~ 207 (251)
T 1jad_A 130 ESSESNIKDIKKKLEAKRLDRIQVMMR-ST-SDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRA 207 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999988653 34443 22 4554222233333 3444444 34566666666666
Q ss_pred hc
Q 025074 60 LG 61 (258)
Q Consensus 60 ~~ 61 (258)
|.
T Consensus 208 l~ 209 (251)
T 1jad_A 208 IQ 209 (251)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 39
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=20.80 E-value=1.3e+02 Score=23.32 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=24.4
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..| |=...++-+|...+-.+.|-+.+
T Consensus 15 sENfdeylkal------Gv~~~~Rk~a~~~kp~~~I~~~G 48 (133)
T 4a1y_A 15 SENFDDYMKAL------GVGLATRKLGNLAKPTVIISKKG 48 (133)
T ss_dssp EESHHHHHHHH------TCCHHHHHHHHHCCCEEEEEEET
T ss_pred ccCHHHHHHHc------CCCHHHHHhHhhCCCeEEEEECC
Confidence 37899999998 33578888888886555554433
No 40
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=20.69 E-value=1.4e+02 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=22.4
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHH--hhcccEEEEeCCCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTH--CLRKHIMIYSGSFP 217 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~--~l~~~I~V~~~~~~ 217 (258)
.+.|++|+..|-- ...++.++. ..+ |+..|..++.
T Consensus 12 seNfdeylkalGv------~~~~rk~a~~~~~k-p~~ei~~~Gd 48 (137)
T 2g7b_A 12 SENFEELLKVLGV------NVMLRKIAVAAASK-PAVEIKQEGD 48 (137)
T ss_dssp EECHHHHHHHTTC------CHHHHHHHHHHHSS-CEEEEEEETT
T ss_pred ccCHHHHHHHcCC------CHHHHhhhhcccCC-ceEEEEECCC
Confidence 3689999999843 357777777 444 5444444443
No 41
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.54 E-value=2e+02 Score=22.05 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHhhhhHHHHHHHHHHHHHHHHHH
Q 025074 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 53 (258)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~kg~k~~~Kk~rK~v~~e~~~le~el~~rh 53 (258)
+.|...|++.+..++--+- .-=-++...|..||.+|.+..
T Consensus 21 kreie~lk~ele~l~~E~q--------~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 21 YREISGLKAQLENMKTESQ--------RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666654332 333467777888888887754
No 42
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=20.37 E-value=1e+02 Score=24.43 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=24.4
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 025074 176 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 215 (258)
Q Consensus 176 ~~~~~~Y~~~m~~~~~WGG~lEL~ALs~~l~~~I~V~~~~ 215 (258)
.+.|++|+..|-- ...++.++..++..+.|-+.+
T Consensus 34 sENfdeylkalGV------~~~~Rk~a~~~kp~~eI~~~G 67 (149)
T 2f73_A 34 QENFEAFMKAIGL------PEELIQKGKDIKGVSEIVQNG 67 (149)
T ss_dssp EECHHHHHHHTTC------CHHHHHHHTTCCCEEEEEEET
T ss_pred CcCHHHHHHHcCC------CHHHHhhhccCCceEEEEEeC
Confidence 4789999999843 468888998887555554443
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.10 E-value=1.2e+02 Score=20.49 Aligned_cols=10 Identities=50% Similarity=0.650 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 025074 10 SQLQNKETEL 19 (258)
Q Consensus 10 k~Lq~~i~~~ 19 (258)
.+|+.++..|
T Consensus 33 ~~Le~~v~~L 42 (63)
T 2dgc_A 33 KQLEDKVEEL 42 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
Done!