Query 025075
Match_columns 258
No_of_seqs 245 out of 1858
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 7.3E-61 1.6E-65 428.4 25.1 237 21-257 1-237 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 4.9E-59 1.1E-63 417.2 24.7 236 22-257 1-236 (312)
3 PLN00106 malate dehydrogenase 100.0 1.1E-57 2.3E-62 410.0 28.0 248 10-257 8-255 (323)
4 COG0039 Mdh Malate/lactate deh 100.0 3.4E-57 7.3E-62 401.3 20.8 227 21-257 1-240 (313)
5 KOG1495 Lactate dehydrogenase 100.0 2E-54 4.3E-59 368.8 22.8 241 5-257 6-262 (332)
6 cd05290 LDH_3 A subgroup of L- 100.0 3.3E-54 7.1E-59 385.9 23.6 224 22-257 1-242 (307)
7 PTZ00325 malate dehydrogenase; 100.0 4.3E-53 9.3E-58 380.0 25.6 238 17-257 5-243 (321)
8 cd05293 LDH_1 A subgroup of L- 100.0 2.8E-53 6E-58 380.9 23.9 227 20-257 3-245 (312)
9 PRK05086 malate dehydrogenase; 100.0 1.2E-52 2.7E-57 377.0 25.5 235 21-257 1-237 (312)
10 KOG1494 NAD-dependent malate d 100.0 2.1E-53 4.6E-58 364.0 18.8 241 16-256 24-265 (345)
11 PLN02602 lactate dehydrogenase 100.0 2.7E-52 5.8E-57 378.8 25.0 226 21-257 38-279 (350)
12 TIGR01759 MalateDH-SF1 malate 100.0 1.2E-52 2.6E-57 377.9 21.4 228 19-257 2-251 (323)
13 TIGR01771 L-LDH-NAD L-lactate 100.0 4.2E-52 9E-57 371.4 19.7 221 25-257 1-237 (299)
14 PRK05442 malate dehydrogenase; 100.0 5.5E-52 1.2E-56 374.0 19.9 228 19-257 3-252 (326)
15 PRK00066 ldh L-lactate dehydro 100.0 1.4E-50 3E-55 364.1 24.4 226 20-257 6-246 (315)
16 TIGR01757 Malate-DH_plant mala 100.0 7.8E-50 1.7E-54 365.2 22.4 228 18-256 42-291 (387)
17 cd00704 MDH Malate dehydrogena 100.0 5.3E-50 1.1E-54 361.1 20.7 226 21-257 1-251 (323)
18 PLN00112 malate dehydrogenase 100.0 8.5E-50 1.8E-54 370.0 22.4 229 17-256 97-347 (444)
19 cd05291 HicDH_like L-2-hydroxy 100.0 1.9E-49 4.1E-54 356.0 22.9 225 21-257 1-240 (306)
20 PTZ00117 malate dehydrogenase; 100.0 6.6E-49 1.4E-53 354.1 25.9 228 20-257 5-247 (319)
21 cd01338 MDH_choloroplast_like 100.0 1.5E-49 3.2E-54 358.0 21.6 228 19-257 1-250 (322)
22 TIGR01763 MalateDH_bact malate 100.0 2.3E-49 5E-54 354.9 22.4 228 21-257 2-238 (305)
23 cd00300 LDH_like L-lactate deh 100.0 2.5E-49 5.5E-54 354.2 21.3 224 23-257 1-235 (300)
24 PTZ00082 L-lactate dehydrogena 100.0 1.1E-48 2.4E-53 352.5 25.1 228 20-257 6-253 (321)
25 TIGR01758 MDH_euk_cyt malate d 100.0 2.3E-48 5E-53 350.5 22.2 228 22-257 1-251 (324)
26 cd05292 LDH_2 A subgroup of L- 100.0 1.8E-47 4E-52 343.3 23.8 225 21-257 1-241 (308)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 3.2E-47 7E-52 343.5 20.3 230 19-257 1-254 (325)
28 cd05294 LDH-like_MDH_nadp A la 100.0 3E-46 6.4E-51 335.5 23.1 227 21-257 1-241 (309)
29 PRK06223 malate dehydrogenase; 100.0 1.4E-45 3E-50 331.0 24.1 228 20-257 2-239 (307)
30 cd01339 LDH-like_MDH L-lactate 100.0 1.3E-45 2.9E-50 330.3 23.1 224 23-256 1-234 (300)
31 PLN00135 malate dehydrogenase 100.0 5.1E-45 1.1E-49 326.1 18.7 202 48-257 15-234 (309)
32 cd05295 MDH_like Malate dehydr 100.0 2.5E-44 5.5E-49 333.4 19.0 226 18-257 121-380 (452)
33 TIGR01756 LDH_protist lactate 100.0 7.4E-43 1.6E-47 312.9 18.8 199 48-257 17-235 (313)
34 cd00650 LDH_MDH_like NAD-depen 100.0 1.7E-40 3.7E-45 292.1 21.3 181 23-209 1-186 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 7.4E-35 1.6E-39 245.4 13.1 231 19-256 3-255 (332)
36 PF00056 Ldh_1_N: lactate/mala 100.0 1.1E-34 2.3E-39 232.6 12.2 139 21-164 1-141 (141)
37 PRK15076 alpha-galactosidase; 99.9 4E-26 8.6E-31 213.2 13.1 163 20-195 1-197 (431)
38 cd05197 GH4_glycoside_hydrolas 99.9 2.6E-25 5.6E-30 207.2 16.2 173 21-209 1-204 (425)
39 cd05296 GH4_P_beta_glucosidase 99.9 4.4E-25 9.6E-30 205.3 15.5 165 21-196 1-196 (419)
40 cd05297 GH4_alpha_glucosidase_ 99.9 3E-22 6.4E-27 187.2 15.3 165 21-195 1-195 (423)
41 cd05298 GH4_GlvA_pagL_like Gly 99.9 1.1E-20 2.3E-25 176.7 16.8 164 21-195 1-194 (437)
42 PF02056 Glyco_hydro_4: Family 99.8 4.5E-20 9.7E-25 153.0 13.4 152 22-183 1-183 (183)
43 COG1486 CelF Alpha-galactosida 99.8 1.4E-19 3E-24 166.6 15.5 168 18-195 1-198 (442)
44 PF02866 Ldh_1_C: lactate/mala 99.8 2.1E-20 4.5E-25 154.9 8.1 89 166-257 1-100 (174)
45 PF02737 3HCDH_N: 3-hydroxyacy 99.0 7.1E-10 1.5E-14 92.3 7.9 117 22-166 1-136 (180)
46 COG1250 FadB 3-hydroxyacyl-CoA 99.0 1E-09 2.2E-14 98.2 8.7 141 20-185 3-178 (307)
47 COG1004 Ugd Predicted UDP-gluc 99.0 3.1E-08 6.6E-13 90.5 16.8 115 21-147 1-131 (414)
48 PRK07066 3-hydroxybutyryl-CoA 99.0 8.8E-09 1.9E-13 93.1 12.5 121 19-165 6-140 (321)
49 TIGR02437 FadB fatty oxidation 98.9 7.7E-09 1.7E-13 102.8 10.5 124 17-165 310-449 (714)
50 PRK11730 fadB multifunctional 98.9 1.2E-08 2.5E-13 101.6 10.8 121 20-165 313-449 (715)
51 PRK07819 3-hydroxybutyryl-CoA 98.9 2.2E-08 4.8E-13 89.3 11.6 121 20-165 5-142 (286)
52 PRK08293 3-hydroxybutyryl-CoA 98.9 1.4E-08 3.1E-13 90.4 10.0 119 20-165 3-141 (287)
53 TIGR02441 fa_ox_alpha_mit fatt 98.8 9.2E-09 2E-13 102.5 9.2 123 18-165 333-471 (737)
54 PF03721 UDPG_MGDP_dh_N: UDP-g 98.8 1.3E-08 2.7E-13 85.2 7.2 122 21-156 1-140 (185)
55 TIGR02440 FadJ fatty oxidation 98.8 3.5E-08 7.6E-13 98.0 11.5 122 19-165 303-441 (699)
56 PRK11154 fadJ multifunctional 98.8 3.2E-08 7E-13 98.4 10.5 122 19-165 308-446 (708)
57 PRK05808 3-hydroxybutyryl-CoA 98.7 5.7E-08 1.2E-12 86.3 9.4 118 20-165 3-139 (282)
58 KOG2304 3-hydroxyacyl-CoA dehy 98.7 2.1E-08 4.4E-13 85.1 4.6 123 20-165 11-153 (298)
59 PLN02353 probable UDP-glucose 98.7 3.1E-07 6.6E-12 87.3 12.8 125 20-146 1-137 (473)
60 TIGR01915 npdG NADPH-dependent 98.7 4.9E-07 1.1E-11 77.4 12.9 101 21-141 1-105 (219)
61 PRK06035 3-hydroxyacyl-CoA deh 98.7 2.3E-07 5E-12 82.8 11.2 118 20-165 3-142 (291)
62 PF01210 NAD_Gly3P_dh_N: NAD-d 98.6 1.2E-07 2.7E-12 77.0 8.1 94 22-137 1-103 (157)
63 COG0240 GpsA Glycerol-3-phosph 98.6 8.5E-07 1.9E-11 79.7 13.1 118 20-161 1-128 (329)
64 PRK07530 3-hydroxybutyryl-CoA 98.6 2.3E-07 5E-12 82.8 9.3 118 20-165 4-140 (292)
65 PRK09260 3-hydroxybutyryl-CoA 98.6 3.4E-07 7.3E-12 81.6 9.3 99 21-141 2-119 (288)
66 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.6 3E-07 6.5E-12 88.1 9.5 119 20-165 5-141 (503)
67 PF01073 3Beta_HSD: 3-beta hyd 98.5 7.3E-07 1.6E-11 79.3 10.8 116 24-141 1-118 (280)
68 PRK08268 3-hydroxy-acyl-CoA de 98.5 5.3E-07 1.1E-11 86.5 9.9 117 21-165 8-143 (507)
69 PRK06130 3-hydroxybutyryl-CoA 98.5 8.9E-07 1.9E-11 79.6 10.7 119 20-165 4-136 (311)
70 PLN00198 anthocyanidin reducta 98.5 4E-06 8.7E-11 75.9 14.8 178 17-196 6-202 (338)
71 PRK06129 3-hydroxyacyl-CoA deh 98.5 1.5E-06 3.3E-11 78.2 11.7 120 20-165 2-139 (308)
72 PRK07531 bifunctional 3-hydrox 98.5 1.5E-06 3.3E-11 83.2 12.0 101 21-142 5-119 (495)
73 PRK15181 Vi polysaccharide bio 98.5 1.7E-06 3.7E-11 78.9 11.8 169 18-196 13-199 (348)
74 PLN02166 dTDP-glucose 4,6-dehy 98.5 2.5E-06 5.5E-11 80.4 13.1 171 17-196 117-297 (436)
75 PLN02545 3-hydroxybutyryl-CoA 98.4 8.1E-07 1.8E-11 79.4 8.8 121 20-165 4-140 (295)
76 PLN02427 UDP-apiose/xylose syn 98.4 2.1E-06 4.6E-11 79.3 11.0 118 17-138 11-136 (386)
77 PF03807 F420_oxidored: NADP o 98.4 1.9E-06 4E-11 63.8 8.3 94 22-139 1-96 (96)
78 KOG1502 Flavonol reductase/cin 98.4 5.2E-06 1.1E-10 74.7 11.6 120 19-141 5-131 (327)
79 TIGR01181 dTDP_gluc_dehyt dTDP 98.3 8.9E-06 1.9E-10 72.1 13.0 167 22-196 1-184 (317)
80 PRK10217 dTDP-glucose 4,6-dehy 98.3 1.6E-05 3.4E-10 72.3 14.4 171 20-196 1-194 (355)
81 TIGR03589 PseB UDP-N-acetylglu 98.3 4.9E-06 1.1E-10 75.2 10.9 113 20-137 4-124 (324)
82 CHL00194 ycf39 Ycf39; Provisio 98.3 4.5E-06 9.8E-11 75.1 10.6 108 21-137 1-109 (317)
83 PLN02695 GDP-D-mannose-3',5'-e 98.3 4.5E-06 9.9E-11 76.9 10.7 171 17-196 18-201 (370)
84 TIGR02622 CDP_4_6_dhtase CDP-g 98.3 2.3E-05 5E-10 71.4 15.2 175 20-196 4-193 (349)
85 PRK00094 gpsA NAD(P)H-dependen 98.3 8.9E-06 1.9E-10 73.2 12.2 100 20-141 1-109 (325)
86 COG0451 WcaG Nucleoside-diphos 98.3 5.5E-06 1.2E-10 73.4 10.5 166 21-196 1-176 (314)
87 TIGR03026 NDP-sugDHase nucleot 98.3 5.7E-06 1.2E-10 77.4 10.7 119 21-153 1-137 (411)
88 PLN02206 UDP-glucuronate decar 98.3 1.2E-05 2.6E-10 76.0 12.9 113 19-137 118-232 (442)
89 PLN02662 cinnamyl-alcohol dehy 98.3 1.4E-05 3E-10 71.6 12.7 113 21-136 5-125 (322)
90 PRK11064 wecC UDP-N-acetyl-D-m 98.3 8.1E-06 1.8E-10 76.6 11.5 111 19-144 2-127 (415)
91 PRK14619 NAD(P)H-dependent gly 98.3 9.2E-06 2E-10 73.1 11.4 80 19-139 3-84 (308)
92 PF03446 NAD_binding_2: NAD bi 98.3 4.4E-06 9.5E-11 68.3 8.1 65 20-96 1-65 (163)
93 PLN02572 UDP-sulfoquinovose sy 98.3 1.4E-05 3E-10 75.6 12.6 174 19-196 46-262 (442)
94 PRK08125 bifunctional UDP-gluc 98.2 1.3E-05 2.8E-10 79.4 12.8 168 19-196 314-497 (660)
95 PRK12439 NAD(P)H-dependent gly 98.2 2.2E-05 4.7E-10 71.8 13.3 120 18-162 5-135 (341)
96 PLN02650 dihydroflavonol-4-red 98.2 1.9E-05 4E-10 71.9 12.7 176 19-196 4-197 (351)
97 PRK15057 UDP-glucose 6-dehydro 98.2 9.8E-06 2.1E-10 75.3 10.9 111 21-143 1-124 (388)
98 PRK06522 2-dehydropantoate 2-r 98.2 3.7E-05 7.9E-10 68.5 13.9 121 21-168 1-125 (304)
99 PF02719 Polysacc_synt_2: Poly 98.2 3.7E-07 8E-12 81.2 0.8 118 23-141 1-136 (293)
100 TIGR03466 HpnA hopanoid-associ 98.2 1.6E-05 3.4E-10 71.1 11.2 112 21-137 1-112 (328)
101 PRK12921 2-dehydropantoate 2-r 98.2 2.7E-05 5.9E-10 69.5 12.8 119 21-168 1-127 (305)
102 PRK11908 NAD-dependent epimera 98.2 1.1E-05 2.4E-10 73.3 10.2 167 20-196 1-183 (347)
103 PLN02214 cinnamoyl-CoA reducta 98.2 2E-05 4.3E-10 71.8 11.5 170 19-196 9-195 (342)
104 COG2085 Predicted dinucleotide 98.2 2.7E-05 5.9E-10 65.8 11.4 96 20-140 1-96 (211)
105 TIGR01472 gmd GDP-mannose 4,6- 98.2 3E-05 6.4E-10 70.4 12.6 156 21-185 1-178 (343)
106 COG1087 GalE UDP-glucose 4-epi 98.2 1.8E-05 4E-10 70.2 10.6 164 21-196 1-176 (329)
107 PRK08229 2-dehydropantoate 2-r 98.2 2.8E-05 6E-10 70.7 12.3 103 19-142 1-112 (341)
108 PRK06249 2-dehydropantoate 2-r 98.2 2.1E-05 4.5E-10 71.0 11.0 120 17-165 2-127 (313)
109 COG1086 Predicted nucleoside-d 98.1 1.6E-05 3.5E-10 75.8 10.4 120 21-141 251-384 (588)
110 PRK10084 dTDP-glucose 4,6 dehy 98.1 3.6E-05 7.8E-10 69.9 12.4 170 21-196 1-201 (352)
111 PRK14618 NAD(P)H-dependent gly 98.1 3.2E-05 6.9E-10 70.1 11.9 97 20-141 4-108 (328)
112 TIGR03376 glycerol3P_DH glycer 98.1 2.5E-05 5.4E-10 71.4 10.8 71 22-96 1-90 (342)
113 PLN02653 GDP-mannose 4,6-dehyd 98.1 3.5E-05 7.7E-10 69.7 11.8 111 17-129 3-126 (340)
114 PF13460 NAD_binding_10: NADH( 98.1 1.3E-05 2.8E-10 65.9 8.1 93 23-137 1-97 (183)
115 PRK14620 NAD(P)H-dependent gly 98.1 3E-05 6.4E-10 70.2 11.1 99 21-141 1-110 (326)
116 PRK15182 Vi polysaccharide bio 98.1 5.4E-05 1.2E-09 71.2 12.8 121 19-152 5-136 (425)
117 PTZ00345 glycerol-3-phosphate 98.1 4.9E-05 1.1E-09 70.1 11.6 98 21-138 12-130 (365)
118 PRK10675 UDP-galactose-4-epime 98.0 6.5E-05 1.4E-09 67.7 12.0 114 21-137 1-123 (338)
119 PLN03209 translocon at the inn 98.0 7.1E-05 1.5E-09 72.4 11.9 116 19-137 79-207 (576)
120 PLN02583 cinnamoyl-CoA reducta 98.0 0.00012 2.5E-09 65.4 12.6 113 21-137 7-127 (297)
121 TIGR01777 yfcH conserved hypot 98.0 4.7E-05 1E-09 66.8 9.9 99 23-130 1-103 (292)
122 PRK11150 rfaD ADP-L-glycero-D- 98.0 8.8E-05 1.9E-09 66.1 11.4 160 23-196 2-174 (308)
123 PLN02778 3,5-epimerase/4-reduc 98.0 0.00016 3.5E-09 64.7 13.0 90 19-130 8-104 (298)
124 PRK06194 hypothetical protein; 98.0 0.00046 9.9E-09 60.7 15.6 159 20-194 6-192 (287)
125 PF01118 Semialdhyde_dh: Semia 98.0 8.2E-05 1.8E-09 57.7 9.6 72 22-96 1-74 (121)
126 PLN02260 probable rhamnose bio 98.0 0.00025 5.4E-09 70.3 15.3 175 19-196 5-193 (668)
127 PLN02989 cinnamyl-alcohol dehy 97.9 0.00015 3.1E-09 65.2 12.5 171 20-196 5-198 (325)
128 PLN02896 cinnamyl-alcohol dehy 97.9 0.00023 4.9E-09 64.9 13.9 173 19-196 9-210 (353)
129 COG1748 LYS9 Saccharopine dehy 97.9 0.00015 3.3E-09 67.1 12.5 149 20-196 1-158 (389)
130 PRK11880 pyrroline-5-carboxyla 97.9 8.6E-05 1.9E-09 65.2 10.5 96 20-141 2-98 (267)
131 PLN02986 cinnamyl-alcohol dehy 97.9 0.00019 4.2E-09 64.4 12.9 105 21-127 6-117 (322)
132 PRK07680 late competence prote 97.9 0.00017 3.6E-09 63.8 11.2 97 21-141 1-100 (273)
133 PRK12549 shikimate 5-dehydroge 97.9 0.00012 2.7E-09 65.2 10.4 86 6-96 113-200 (284)
134 PRK06928 pyrroline-5-carboxyla 97.9 0.00042 9.2E-09 61.4 13.8 99 20-141 1-102 (277)
135 PRK09987 dTDP-4-dehydrorhamnos 97.9 8.6E-05 1.9E-09 66.3 9.2 99 21-137 1-103 (299)
136 PRK08655 prephenate dehydrogen 97.8 0.0004 8.6E-09 65.6 13.9 66 21-96 1-66 (437)
137 PRK07417 arogenate dehydrogena 97.8 0.00014 3.1E-09 64.5 10.2 64 21-96 1-65 (279)
138 TIGR00872 gnd_rel 6-phosphoglu 97.8 0.0002 4.4E-09 64.2 11.2 95 21-140 1-96 (298)
139 PRK11199 tyrA bifunctional cho 97.8 0.00013 2.7E-09 67.6 10.1 54 19-96 97-150 (374)
140 PLN02657 3,8-divinyl protochlo 97.8 0.00024 5.2E-09 66.0 12.0 115 17-137 57-181 (390)
141 PLN02240 UDP-glucose 4-epimera 97.8 0.0003 6.6E-09 63.7 12.0 115 19-137 4-131 (352)
142 PRK07502 cyclohexadienyl dehyd 97.8 0.00025 5.4E-09 63.7 11.1 70 20-97 6-75 (307)
143 PLN02688 pyrroline-5-carboxyla 97.8 0.00018 4E-09 63.1 10.0 95 21-141 1-99 (266)
144 KOG1430 C-3 sterol dehydrogena 97.8 0.00018 4E-09 65.9 10.2 110 19-130 3-119 (361)
145 COG2910 Putative NADH-flavin r 97.8 0.00023 4.9E-09 59.1 9.6 105 21-138 1-105 (211)
146 PF01370 Epimerase: NAD depend 97.8 5.5E-05 1.2E-09 64.1 6.4 165 23-196 1-174 (236)
147 PRK07679 pyrroline-5-carboxyla 97.8 0.0003 6.6E-09 62.3 11.3 99 19-141 2-103 (279)
148 PRK06545 prephenate dehydrogen 97.8 0.00026 5.7E-09 65.1 11.2 68 21-96 1-68 (359)
149 PLN02256 arogenate dehydrogena 97.8 0.0008 1.7E-08 60.6 13.9 69 15-96 31-100 (304)
150 TIGR01214 rmlD dTDP-4-dehydror 97.8 0.00017 3.6E-09 63.5 9.4 95 22-137 1-99 (287)
151 PRK07201 short chain dehydroge 97.8 0.00042 9E-09 68.3 13.2 108 21-132 1-120 (657)
152 PRK07634 pyrroline-5-carboxyla 97.8 0.00058 1.3E-08 59.0 12.6 98 19-141 3-103 (245)
153 PF10727 Rossmann-like: Rossma 97.7 0.00017 3.8E-09 56.6 8.0 101 19-145 9-114 (127)
154 PRK12491 pyrroline-5-carboxyla 97.7 0.00025 5.5E-09 62.8 10.0 97 20-141 2-101 (272)
155 PLN00141 Tic62-NAD(P)-related 97.7 0.00029 6.2E-09 61.1 10.1 113 17-136 14-130 (251)
156 PRK08267 short chain dehydroge 97.7 0.00039 8.4E-09 60.3 10.8 118 20-139 1-137 (260)
157 PRK05865 hypothetical protein; 97.7 0.00035 7.5E-09 70.8 11.7 104 21-140 1-105 (854)
158 PRK08643 acetoin reductase; Va 97.7 0.0034 7.3E-08 54.1 16.4 116 21-140 3-141 (256)
159 COG0345 ProC Pyrroline-5-carbo 97.7 0.00044 9.4E-09 61.0 10.7 97 20-141 1-99 (266)
160 PF02558 ApbA: Ketopantoate re 97.7 0.00043 9.4E-09 55.2 9.7 118 23-167 1-125 (151)
161 COG2084 MmsB 3-hydroxyisobutyr 97.7 0.00064 1.4E-08 60.5 11.5 66 21-97 1-66 (286)
162 PLN02686 cinnamoyl-CoA reducta 97.7 0.00033 7.1E-09 64.5 10.0 177 17-196 50-250 (367)
163 TIGR02354 thiF_fam2 thiamine b 97.7 0.00089 1.9E-08 56.7 11.7 35 19-55 20-54 (200)
164 cd01065 NAD_bind_Shikimate_DH 97.6 0.00034 7.4E-09 56.0 8.8 87 5-99 4-92 (155)
165 COG0300 DltE Short-chain dehyd 97.6 0.00057 1.2E-08 60.2 10.8 119 16-138 2-143 (265)
166 PTZ00431 pyrroline carboxylate 97.6 0.00027 5.8E-09 62.1 8.8 91 19-141 2-94 (260)
167 TIGR02197 heptose_epim ADP-L-g 97.6 0.00052 1.1E-08 60.9 10.7 109 23-137 1-113 (314)
168 PRK12829 short chain dehydroge 97.6 0.0019 4.1E-08 55.8 13.9 38 18-57 9-46 (264)
169 PRK11559 garR tartronate semia 97.6 0.00041 8.9E-09 61.8 9.9 65 20-96 2-66 (296)
170 KOG1429 dTDP-glucose 4-6-dehyd 97.6 0.0002 4.2E-09 63.2 7.3 79 17-99 24-102 (350)
171 PRK06924 short chain dehydroge 97.6 0.00072 1.6E-08 58.1 10.9 34 21-56 2-35 (251)
172 PRK06180 short chain dehydroge 97.6 0.0017 3.8E-08 56.9 13.5 113 20-138 4-137 (277)
173 TIGR01505 tartro_sem_red 2-hyd 97.6 0.00033 7.1E-09 62.4 8.9 63 22-96 1-63 (291)
174 PRK13394 3-hydroxybutyrate deh 97.6 0.0009 1.9E-08 57.7 11.4 115 20-138 7-144 (262)
175 PRK05708 2-dehydropantoate 2-r 97.6 0.00092 2E-08 60.1 11.8 117 20-165 2-125 (305)
176 PRK06182 short chain dehydroge 97.6 0.0007 1.5E-08 59.2 10.8 114 20-138 3-133 (273)
177 PRK06482 short chain dehydroge 97.6 0.0033 7.2E-08 54.9 15.0 112 21-138 3-135 (276)
178 PRK12320 hypothetical protein; 97.6 0.00064 1.4E-08 67.5 10.9 100 21-137 1-101 (699)
179 PRK08269 3-hydroxybutyryl-CoA 97.5 0.0003 6.6E-09 63.6 8.0 110 32-165 1-136 (314)
180 PRK15461 NADH-dependent gamma- 97.5 0.00027 5.9E-09 63.2 7.6 65 20-96 1-65 (296)
181 COG0677 WecC UDP-N-acetyl-D-ma 97.5 0.0008 1.7E-08 61.9 10.4 120 21-153 10-145 (436)
182 PRK12490 6-phosphogluconate de 97.5 0.0011 2.3E-08 59.5 11.2 64 21-96 1-67 (299)
183 PRK05717 oxidoreductase; Valid 97.5 0.0014 3.1E-08 56.6 11.6 147 21-182 11-176 (255)
184 PF01488 Shikimate_DH: Shikima 97.5 0.0003 6.6E-09 55.6 6.8 78 17-99 9-86 (135)
185 PRK12480 D-lactate dehydrogena 97.5 0.00068 1.5E-08 61.8 10.0 90 19-138 145-235 (330)
186 PTZ00142 6-phosphogluconate de 97.5 0.0006 1.3E-08 64.9 9.9 98 20-140 1-104 (470)
187 PRK08507 prephenate dehydrogen 97.5 0.00086 1.9E-08 59.3 10.3 66 21-96 1-66 (275)
188 COG1893 ApbA Ketopantoate redu 97.5 0.00077 1.7E-08 60.8 10.0 119 21-168 1-126 (307)
189 PRK12384 sorbitol-6-phosphate 97.5 0.0058 1.3E-07 52.7 15.3 118 21-140 3-143 (259)
190 PRK07326 short chain dehydroge 97.5 0.0018 4E-08 55.0 11.9 114 21-139 7-141 (237)
191 PLN02253 xanthoxin dehydrogena 97.5 0.0026 5.6E-08 55.8 13.1 146 20-183 18-188 (280)
192 PRK07231 fabG 3-ketoacyl-(acyl 97.5 0.0049 1.1E-07 52.7 14.6 36 20-57 5-40 (251)
193 PRK07856 short chain dehydroge 97.5 0.0018 4E-08 55.8 12.0 110 20-139 6-136 (252)
194 cd05311 NAD_bind_2_malic_enz N 97.5 0.00078 1.7E-08 58.1 9.5 110 7-141 12-132 (226)
195 PRK07067 sorbitol dehydrogenas 97.5 0.0036 7.7E-08 54.1 13.6 114 21-138 7-140 (257)
196 PRK08219 short chain dehydroge 97.5 0.0012 2.6E-08 55.6 10.4 75 20-99 3-82 (227)
197 PRK07523 gluconate 5-dehydroge 97.5 0.0027 5.8E-08 54.8 12.8 116 21-140 11-148 (255)
198 PRK09599 6-phosphogluconate de 97.5 0.0013 2.9E-08 58.9 11.0 64 21-96 1-67 (301)
199 PRK10538 malonic semialdehyde 97.5 0.0033 7.2E-08 54.1 13.1 35 21-57 1-35 (248)
200 PRK07424 bifunctional sterol d 97.5 0.0023 4.9E-08 60.0 12.7 106 19-127 177-291 (406)
201 COG0569 TrkA K+ transport syst 97.5 0.00065 1.4E-08 58.5 8.5 72 21-97 1-75 (225)
202 PRK08278 short chain dehydroge 97.5 0.0089 1.9E-07 52.4 15.9 159 20-194 6-193 (273)
203 PRK12828 short chain dehydroge 97.5 0.0016 3.5E-08 55.1 10.8 117 20-138 7-141 (239)
204 PRK07806 short chain dehydroge 97.4 0.002 4.4E-08 55.2 11.5 115 20-138 6-135 (248)
205 PRK08213 gluconate 5-dehydroge 97.4 0.0027 6E-08 54.9 12.4 114 21-138 13-149 (259)
206 PRK06101 short chain dehydroge 97.4 0.0032 7E-08 53.9 12.7 114 21-138 2-128 (240)
207 PRK08340 glucose-1-dehydrogena 97.4 0.0035 7.5E-08 54.4 13.0 35 21-57 1-35 (259)
208 COG1712 Predicted dinucleotide 97.4 0.0014 3.1E-08 56.0 9.9 96 21-141 1-97 (255)
209 PRK07102 short chain dehydroge 97.4 0.0016 3.5E-08 55.8 10.5 117 20-139 1-136 (243)
210 PLN02725 GDP-4-keto-6-deoxyman 97.4 0.0006 1.3E-08 60.3 8.1 152 24-196 1-164 (306)
211 TIGR01179 galE UDP-glucose-4-e 97.4 0.0012 2.6E-08 58.6 9.9 104 22-130 1-114 (328)
212 TIGR01832 kduD 2-deoxy-D-gluco 97.4 0.0091 2E-07 51.1 15.1 115 20-138 5-140 (248)
213 PRK06476 pyrroline-5-carboxyla 97.4 0.0016 3.4E-08 57.0 10.4 68 21-96 1-69 (258)
214 PRK09135 pteridine reductase; 97.4 0.0036 7.8E-08 53.4 12.5 103 21-126 7-129 (249)
215 PRK12936 3-ketoacyl-(acyl-carr 97.4 0.0021 4.5E-08 54.8 11.0 114 20-140 6-141 (245)
216 KOG2666 UDP-glucose/GDP-mannos 97.4 0.00024 5.3E-09 63.4 5.2 81 20-102 1-92 (481)
217 PRK05875 short chain dehydroge 97.4 0.011 2.4E-07 51.6 15.7 159 20-194 7-188 (276)
218 PRK06172 short chain dehydroge 97.4 0.0059 1.3E-07 52.5 13.7 35 21-57 8-42 (253)
219 PRK14982 acyl-ACP reductase; P 97.4 0.0014 3.1E-08 59.8 10.1 99 18-142 153-251 (340)
220 PRK08265 short chain dehydroge 97.4 0.0049 1.1E-07 53.6 13.3 36 20-57 6-41 (261)
221 TIGR03206 benzo_BadH 2-hydroxy 97.4 0.0039 8.4E-08 53.4 12.2 114 20-138 3-139 (250)
222 PRK05993 short chain dehydroge 97.4 0.0016 3.5E-08 57.2 9.9 112 21-138 5-135 (277)
223 PF05368 NmrA: NmrA-like famil 97.4 0.00069 1.5E-08 57.9 7.4 94 23-130 1-96 (233)
224 PRK06598 aspartate-semialdehyd 97.3 0.0013 2.7E-08 60.7 9.4 72 20-97 1-74 (369)
225 TIGR01746 Thioester-redct thio 97.3 0.0028 6.1E-08 57.0 11.7 109 22-131 1-130 (367)
226 PRK13243 glyoxylate reductase; 97.3 0.0012 2.7E-08 60.1 9.3 95 20-141 150-246 (333)
227 PRK12429 3-hydroxybutyrate deh 97.3 0.0034 7.3E-08 53.9 11.6 114 20-138 4-140 (258)
228 PRK07069 short chain dehydroge 97.3 0.015 3.2E-07 49.8 15.4 115 22-139 1-139 (251)
229 PRK07774 short chain dehydroge 97.3 0.011 2.3E-07 50.6 14.6 36 20-57 6-41 (250)
230 PRK08263 short chain dehydroge 97.3 0.0014 3.1E-08 57.3 9.2 111 21-137 4-135 (275)
231 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0038 8.3E-08 56.3 12.0 102 18-141 176-277 (311)
232 PRK12745 3-ketoacyl-(acyl-carr 97.3 0.015 3.3E-07 49.9 15.3 34 21-56 3-36 (256)
233 COG1090 Predicted nucleoside-d 97.3 0.0025 5.5E-08 56.1 10.1 97 23-130 1-102 (297)
234 PRK15469 ghrA bifunctional gly 97.3 0.003 6.5E-08 57.1 11.1 92 19-137 135-226 (312)
235 PLN02712 arogenate dehydrogena 97.3 0.0019 4.2E-08 64.1 10.6 67 17-96 49-116 (667)
236 PRK07666 fabG 3-ketoacyl-(acyl 97.3 0.015 3.2E-07 49.5 15.0 75 21-99 8-95 (239)
237 TIGR01850 argC N-acetyl-gamma- 97.3 0.0021 4.5E-08 59.0 10.1 74 21-97 1-77 (346)
238 PRK12367 short chain dehydroge 97.3 0.0068 1.5E-07 52.6 12.9 102 21-126 15-124 (245)
239 PRK06179 short chain dehydroge 97.3 0.0024 5.2E-08 55.6 10.1 111 21-139 5-133 (270)
240 COG0287 TyrA Prephenate dehydr 97.3 0.007 1.5E-07 53.8 13.0 65 19-96 2-72 (279)
241 COG0136 Asd Aspartate-semialde 97.3 0.0014 3.1E-08 59.2 8.6 73 20-97 1-75 (334)
242 PLN02968 Probable N-acetyl-gam 97.3 0.0022 4.8E-08 59.5 10.2 77 18-97 36-113 (381)
243 PRK07814 short chain dehydroge 97.3 0.0045 9.8E-08 53.8 11.7 117 19-139 9-148 (263)
244 PRK15059 tartronate semialdehy 97.3 0.0014 3E-08 58.6 8.6 63 21-96 1-63 (292)
245 PF04321 RmlD_sub_bind: RmlD s 97.2 0.00043 9.4E-09 61.6 5.1 95 21-136 1-99 (286)
246 PRK09291 short chain dehydroge 97.2 0.011 2.3E-07 50.9 13.6 115 21-138 3-132 (257)
247 PRK05653 fabG 3-ketoacyl-(acyl 97.2 0.0046 9.9E-08 52.5 11.2 36 20-57 5-40 (246)
248 PRK08264 short chain dehydroge 97.2 0.0045 9.8E-08 52.7 11.1 115 21-140 7-135 (238)
249 PRK06914 short chain dehydroge 97.2 0.0065 1.4E-07 53.1 12.3 35 21-57 4-38 (280)
250 PRK12937 short chain dehydroge 97.2 0.012 2.5E-07 50.2 13.6 114 21-138 6-140 (245)
251 COG4221 Short-chain alcohol de 97.2 0.019 4.1E-07 49.8 14.5 156 22-194 8-182 (246)
252 PRK13304 L-aspartate dehydroge 97.2 0.0032 6.9E-08 55.6 10.2 69 20-97 1-70 (265)
253 PRK05479 ketol-acid reductoiso 97.2 0.0042 9.1E-08 56.5 11.1 66 19-96 16-81 (330)
254 PRK12939 short chain dehydroge 97.2 0.0094 2E-07 50.9 12.8 115 20-138 7-143 (250)
255 PRK06198 short chain dehydroge 97.2 0.026 5.7E-07 48.6 15.7 116 20-138 6-144 (260)
256 TIGR01745 asd_gamma aspartate- 97.2 0.0019 4.1E-08 59.5 8.7 71 21-97 1-73 (366)
257 PRK08818 prephenate dehydrogen 97.2 0.0037 7.9E-08 57.8 10.6 56 20-96 4-59 (370)
258 PF02826 2-Hacid_dh_C: D-isome 97.2 0.0029 6.3E-08 52.3 9.1 93 20-139 36-129 (178)
259 PRK07576 short chain dehydroge 97.2 0.0088 1.9E-07 52.1 12.6 118 21-140 10-146 (264)
260 PRK14874 aspartate-semialdehyd 97.2 0.0035 7.6E-08 57.2 10.4 71 20-97 1-72 (334)
261 PRK06181 short chain dehydroge 97.2 0.013 2.8E-07 50.6 13.7 116 21-140 2-139 (263)
262 PRK07074 short chain dehydroge 97.2 0.0055 1.2E-07 52.8 11.2 35 21-57 3-37 (257)
263 PRK05876 short chain dehydroge 97.2 0.0081 1.8E-07 52.8 12.4 115 20-138 6-143 (275)
264 PRK12823 benD 1,6-dihydroxycyc 97.2 0.027 5.9E-07 48.5 15.6 37 18-56 6-42 (260)
265 PRK12481 2-deoxy-D-gluconate 3 97.2 0.013 2.9E-07 50.5 13.6 155 21-193 9-184 (251)
266 PRK06841 short chain dehydroge 97.2 0.004 8.6E-08 53.6 10.2 36 20-57 15-50 (255)
267 PRK14806 bifunctional cyclohex 97.2 0.0097 2.1E-07 59.8 14.3 93 21-137 4-97 (735)
268 PRK08945 putative oxoacyl-(acy 97.2 0.053 1.2E-06 46.4 17.2 37 19-57 11-47 (247)
269 PRK05650 short chain dehydroge 97.2 0.01 2.2E-07 51.7 12.9 113 21-138 1-136 (270)
270 PRK06196 oxidoreductase; Provi 97.2 0.0056 1.2E-07 54.9 11.4 114 19-138 25-156 (315)
271 PRK07060 short chain dehydroge 97.1 0.0062 1.3E-07 51.9 11.2 115 20-138 9-137 (245)
272 PF01113 DapB_N: Dihydrodipico 97.1 0.0028 6E-08 49.4 8.2 72 21-96 1-75 (124)
273 PRK07024 short chain dehydroge 97.1 0.0032 7E-08 54.5 9.4 36 20-57 2-37 (257)
274 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.0031 6.8E-08 52.7 9.0 78 17-97 25-106 (194)
275 PRK07063 short chain dehydroge 97.1 0.019 4.1E-07 49.6 14.3 116 20-138 7-145 (260)
276 PRK07574 formate dehydrogenase 97.1 0.004 8.7E-08 57.9 10.5 98 19-141 191-290 (385)
277 PRK12742 oxidoreductase; Provi 97.1 0.013 2.8E-07 49.7 12.9 155 20-192 6-173 (237)
278 PLN00016 RNA-binding protein; 97.1 0.0037 8E-08 57.6 10.2 38 18-57 50-91 (378)
279 PRK07985 oxidoreductase; Provi 97.1 0.025 5.5E-07 50.2 15.3 116 21-139 50-187 (294)
280 PRK05565 fabG 3-ketoacyl-(acyl 97.1 0.012 2.5E-07 50.1 12.6 37 19-57 4-41 (247)
281 PRK06398 aldose dehydrogenase; 97.1 0.0049 1.1E-07 53.6 10.3 149 20-193 6-171 (258)
282 PRK06728 aspartate-semialdehyd 97.1 0.003 6.6E-08 57.8 9.3 72 19-97 4-77 (347)
283 PRK05855 short chain dehydroge 97.1 0.014 3E-07 56.2 14.4 119 17-139 312-453 (582)
284 TIGR03325 BphB_TodD cis-2,3-di 97.1 0.0053 1.2E-07 53.3 10.5 36 20-57 5-40 (262)
285 PRK07832 short chain dehydroge 97.1 0.036 7.9E-07 48.3 15.8 118 21-140 1-140 (272)
286 PLN02712 arogenate dehydrogena 97.1 0.0092 2E-07 59.3 13.2 66 18-96 367-433 (667)
287 PRK07109 short chain dehydroge 97.1 0.018 3.9E-07 52.3 14.3 114 20-138 8-144 (334)
288 PRK07890 short chain dehydroge 97.1 0.017 3.8E-07 49.6 13.5 115 20-138 5-141 (258)
289 PRK12826 3-ketoacyl-(acyl-carr 97.1 0.012 2.6E-07 50.1 12.4 37 19-57 5-41 (251)
290 PRK12825 fabG 3-ketoacyl-(acyl 97.1 0.014 3E-07 49.5 12.5 37 18-56 4-40 (249)
291 PRK08605 D-lactate dehydrogena 97.1 0.0032 7E-08 57.4 9.0 63 19-96 145-208 (332)
292 TIGR01963 PHB_DH 3-hydroxybuty 97.1 0.011 2.3E-07 50.7 11.8 35 21-57 2-36 (255)
293 PRK07453 protochlorophyllide o 97.0 0.011 2.3E-07 53.2 12.2 115 19-137 5-144 (322)
294 PRK03659 glutathione-regulated 97.0 0.0032 6.9E-08 61.9 9.3 138 20-189 400-542 (601)
295 PLN02350 phosphogluconate dehy 97.0 0.0033 7.1E-08 60.2 9.1 99 17-139 3-109 (493)
296 PRK13302 putative L-aspartate 97.0 0.0067 1.5E-07 53.7 10.6 72 17-97 3-76 (271)
297 PRK07023 short chain dehydroge 97.0 0.0025 5.4E-08 54.6 7.7 36 20-57 1-36 (243)
298 PRK08251 short chain dehydroge 97.0 0.018 3.9E-07 49.2 13.1 35 21-57 3-37 (248)
299 PRK08642 fabG 3-ketoacyl-(acyl 97.0 0.012 2.6E-07 50.4 11.9 33 21-55 6-38 (253)
300 PRK05866 short chain dehydroge 97.0 0.016 3.5E-07 51.5 13.0 35 21-57 41-75 (293)
301 PRK05693 short chain dehydroge 97.0 0.0059 1.3E-07 53.3 10.1 36 20-57 1-36 (274)
302 PRK07825 short chain dehydroge 97.0 0.0044 9.5E-08 54.1 9.2 114 20-139 5-138 (273)
303 PRK06701 short chain dehydroge 97.0 0.023 5E-07 50.4 13.9 116 20-139 46-183 (290)
304 PRK06057 short chain dehydroge 97.0 0.009 1.9E-07 51.6 11.0 37 19-57 6-42 (255)
305 PLN02780 ketoreductase/ oxidor 97.0 0.0086 1.9E-07 54.1 11.3 35 21-57 54-88 (320)
306 PRK06128 oxidoreductase; Provi 97.0 0.044 9.4E-07 48.7 15.7 115 20-138 55-192 (300)
307 PRK08220 2,3-dihydroxybenzoate 97.0 0.012 2.5E-07 50.5 11.6 35 20-56 8-42 (252)
308 PLN02383 aspartate semialdehyd 97.0 0.0056 1.2E-07 56.1 10.0 72 19-97 6-78 (344)
309 PRK06935 2-deoxy-D-gluconate 3 97.0 0.021 4.6E-07 49.3 13.3 35 20-56 15-49 (258)
310 PRK12746 short chain dehydroge 97.0 0.027 5.8E-07 48.3 13.9 114 21-138 7-147 (254)
311 PRK07454 short chain dehydroge 97.0 0.012 2.5E-07 50.3 11.5 37 19-57 5-41 (241)
312 PRK08306 dipicolinate synthase 97.0 0.0079 1.7E-07 53.9 10.7 70 17-96 149-218 (296)
313 PRK05867 short chain dehydroge 97.0 0.019 4.1E-07 49.4 12.9 113 21-137 10-145 (253)
314 PRK12743 oxidoreductase; Provi 97.0 0.052 1.1E-06 46.8 15.6 33 21-55 3-35 (256)
315 PLN03139 formate dehydrogenase 97.0 0.0061 1.3E-07 56.7 10.2 98 19-141 198-297 (386)
316 PRK08644 thiamine biosynthesis 97.0 0.0099 2.2E-07 50.7 10.8 35 20-56 28-62 (212)
317 PRK06197 short chain dehydroge 97.0 0.015 3.3E-07 51.7 12.5 116 20-138 16-152 (306)
318 PF03949 Malic_M: Malic enzyme 97.0 0.0065 1.4E-07 53.2 9.7 123 17-165 22-166 (255)
319 PRK12827 short chain dehydroge 97.0 0.027 5.8E-07 47.9 13.6 117 19-139 5-148 (249)
320 PRK08085 gluconate 5-dehydroge 97.0 0.015 3.2E-07 50.1 12.0 35 21-57 10-44 (254)
321 TIGR01830 3oxo_ACP_reduc 3-oxo 97.0 0.022 4.7E-07 48.2 12.9 116 23-140 1-137 (239)
322 PRK05854 short chain dehydroge 97.0 0.014 3E-07 52.5 12.2 37 19-57 13-49 (313)
323 cd01487 E1_ThiF_like E1_ThiF_l 97.0 0.011 2.4E-07 48.8 10.7 33 22-56 1-33 (174)
324 PRK05557 fabG 3-ketoacyl-(acyl 97.0 0.023 5E-07 48.2 12.9 116 19-138 4-142 (248)
325 PRK07904 short chain dehydroge 97.0 0.014 3E-07 50.7 11.7 115 20-138 8-146 (253)
326 PLN02996 fatty acyl-CoA reduct 96.9 0.023 4.9E-07 54.6 14.1 106 21-127 12-150 (491)
327 PRK05884 short chain dehydroge 96.9 0.0073 1.6E-07 51.4 9.7 35 21-57 1-35 (223)
328 PRK06171 sorbitol-6-phosphate 96.9 0.0091 2E-07 51.8 10.5 36 20-57 9-44 (266)
329 COG0002 ArgC Acetylglutamate s 96.9 0.0022 4.8E-08 58.1 6.6 75 19-96 1-78 (349)
330 PRK08993 2-deoxy-D-gluconate 3 96.9 0.064 1.4E-06 46.2 15.7 114 21-138 11-145 (253)
331 TIGR00465 ilvC ketol-acid redu 96.9 0.008 1.7E-07 54.4 10.1 65 20-96 3-67 (314)
332 PRK06500 short chain dehydroge 96.9 0.012 2.6E-07 50.3 10.9 113 20-137 6-136 (249)
333 TIGR02632 RhaD_aldol-ADH rhamn 96.9 0.032 7E-07 55.6 15.4 129 8-138 399-553 (676)
334 PLN02928 oxidoreductase family 96.9 0.0047 1E-07 56.6 8.8 103 20-138 159-263 (347)
335 PLN02260 probable rhamnose bio 96.9 0.0098 2.1E-07 59.1 11.6 91 18-130 378-475 (668)
336 PRK06138 short chain dehydroge 96.9 0.019 4.2E-07 49.0 12.1 36 20-57 5-40 (252)
337 PRK07577 short chain dehydroge 96.9 0.012 2.6E-07 49.8 10.7 35 21-57 4-38 (234)
338 PRK05671 aspartate-semialdehyd 96.9 0.0029 6.2E-08 57.8 7.1 72 19-97 3-75 (336)
339 PRK00436 argC N-acetyl-gamma-g 96.9 0.0033 7.1E-08 57.6 7.5 76 19-97 1-77 (343)
340 PRK08277 D-mannonate oxidoredu 96.9 0.06 1.3E-06 47.0 15.3 36 20-57 10-45 (278)
341 PRK06124 gluconate 5-dehydroge 96.9 0.017 3.8E-07 49.7 11.8 117 19-140 10-149 (256)
342 PRK06953 short chain dehydroge 96.9 0.01 2.2E-07 50.2 10.1 115 20-139 1-131 (222)
343 TIGR03649 ergot_EASG ergot alk 96.9 0.0084 1.8E-07 52.7 9.9 69 22-97 1-76 (285)
344 PRK08589 short chain dehydroge 96.9 0.035 7.6E-07 48.5 13.8 116 20-139 6-142 (272)
345 KOG2711 Glycerol-3-phosphate d 96.9 0.018 3.9E-07 52.1 11.8 123 18-160 19-167 (372)
346 TIGR02356 adenyl_thiF thiazole 96.9 0.011 2.3E-07 50.0 10.0 34 21-56 22-55 (202)
347 PRK12935 acetoacetyl-CoA reduc 96.9 0.027 5.9E-07 48.1 12.7 114 21-138 7-143 (247)
348 PRK09186 flagellin modificatio 96.9 0.0099 2.1E-07 51.1 9.9 36 20-57 4-39 (256)
349 PRK06949 short chain dehydroge 96.9 0.022 4.7E-07 49.0 12.0 37 19-57 8-44 (258)
350 TIGR00518 alaDH alanine dehydr 96.9 0.0059 1.3E-07 56.5 8.9 77 18-100 165-242 (370)
351 PRK08226 short chain dehydroge 96.8 0.017 3.6E-07 50.0 11.3 36 20-57 6-41 (263)
352 PRK09242 tropinone reductase; 96.8 0.054 1.2E-06 46.7 14.5 35 21-57 10-44 (257)
353 cd00401 AdoHcyase S-adenosyl-L 96.8 0.018 3.9E-07 54.0 12.1 99 9-139 190-291 (413)
354 PRK05476 S-adenosyl-L-homocyst 96.8 0.016 3.4E-07 54.6 11.7 101 9-139 200-301 (425)
355 PRK09009 C factor cell-cell si 96.8 0.04 8.6E-07 46.7 13.4 72 21-100 1-79 (235)
356 PRK07097 gluconate 5-dehydroge 96.8 0.038 8.2E-07 48.0 13.5 118 19-141 9-149 (265)
357 PRK00048 dihydrodipicolinate r 96.8 0.008 1.7E-07 52.8 9.2 68 20-96 1-68 (257)
358 TIGR02371 ala_DH_arch alanine 96.8 0.0057 1.2E-07 55.6 8.5 71 20-96 128-200 (325)
359 TIGR01809 Shik-DH-AROM shikima 96.8 0.0057 1.2E-07 54.4 8.3 88 6-98 109-200 (282)
360 TIGR00873 gnd 6-phosphoglucona 96.8 0.0059 1.3E-07 58.2 8.8 97 22-138 1-99 (467)
361 PF03435 Saccharop_dh: Sacchar 96.8 0.0012 2.6E-08 61.1 4.1 74 23-98 1-77 (386)
362 PRK07478 short chain dehydroge 96.8 0.04 8.8E-07 47.3 13.4 155 21-193 7-185 (254)
363 PRK06113 7-alpha-hydroxysteroi 96.8 0.083 1.8E-06 45.5 15.4 36 20-57 11-46 (255)
364 TIGR02415 23BDH acetoin reduct 96.8 0.022 4.7E-07 48.9 11.7 112 22-137 2-136 (254)
365 PRK08177 short chain dehydroge 96.8 0.0074 1.6E-07 51.1 8.6 36 20-57 1-36 (225)
366 PRK12475 thiamine/molybdopteri 96.8 0.0088 1.9E-07 54.7 9.5 35 20-56 24-58 (338)
367 PRK14027 quinate/shikimate deh 96.8 0.0097 2.1E-07 53.1 9.6 88 6-97 113-203 (283)
368 KOG2305 3-hydroxyacyl-CoA dehy 96.8 0.0024 5.1E-08 54.8 5.3 106 20-144 3-125 (313)
369 cd05312 NAD_bind_1_malic_enz N 96.8 0.03 6.4E-07 49.7 12.4 104 17-141 22-144 (279)
370 PRK08339 short chain dehydroge 96.8 0.021 4.6E-07 49.7 11.4 115 21-139 9-145 (263)
371 PTZ00075 Adenosylhomocysteinas 96.8 0.02 4.3E-07 54.5 11.7 91 19-139 253-343 (476)
372 PRK06523 short chain dehydroge 96.8 0.0034 7.4E-08 54.2 6.3 36 20-57 9-44 (260)
373 TIGR02853 spore_dpaA dipicolin 96.8 0.0081 1.8E-07 53.7 8.8 68 19-96 150-217 (287)
374 PRK12749 quinate/shikimate deh 96.8 0.012 2.6E-07 52.7 9.8 90 6-97 110-205 (288)
375 COG1064 AdhP Zn-dependent alco 96.7 0.047 1E-06 49.8 13.6 127 21-178 168-300 (339)
376 PRK07062 short chain dehydroge 96.7 0.064 1.4E-06 46.4 14.2 115 21-138 9-146 (265)
377 PRK12744 short chain dehydroge 96.7 0.077 1.7E-06 45.7 14.6 33 21-55 9-41 (257)
378 PRK07677 short chain dehydroge 96.7 0.045 9.8E-07 47.0 13.1 113 21-137 2-137 (252)
379 PRK08324 short chain dehydroge 96.7 0.016 3.4E-07 57.9 11.5 115 21-138 423-558 (681)
380 PRK07340 ornithine cyclodeamin 96.7 0.0072 1.6E-07 54.4 8.3 71 19-97 124-197 (304)
381 PRK06463 fabG 3-ketoacyl-(acyl 96.7 0.02 4.3E-07 49.4 10.8 113 21-138 8-138 (255)
382 PRK08628 short chain dehydroge 96.7 0.045 9.7E-07 47.1 13.0 114 20-137 7-139 (258)
383 PRK08063 enoyl-(acyl carrier p 96.7 0.047 1E-06 46.7 13.0 35 20-56 4-39 (250)
384 PRK12747 short chain dehydroge 96.7 0.1 2.2E-06 44.8 15.1 32 21-54 5-36 (252)
385 PRK06483 dihydromonapterin red 96.7 0.03 6.6E-07 47.6 11.7 35 21-57 3-37 (236)
386 TIGR01692 HIBADH 3-hydroxyisob 96.7 0.0077 1.7E-07 53.6 8.2 60 25-96 1-60 (288)
387 PRK08416 7-alpha-hydroxysteroi 96.7 0.16 3.5E-06 43.9 16.4 34 19-54 7-40 (260)
388 cd01483 E1_enzyme_family Super 96.7 0.022 4.7E-07 45.2 9.9 33 22-56 1-33 (143)
389 PRK12824 acetoacetyl-CoA reduc 96.7 0.041 8.9E-07 46.7 12.3 34 21-56 3-36 (245)
390 PRK08040 putative semialdehyde 96.7 0.0043 9.2E-08 56.7 6.5 72 19-97 3-75 (336)
391 PRK06550 fabG 3-ketoacyl-(acyl 96.7 0.032 7E-07 47.2 11.7 68 21-99 6-78 (235)
392 PRK08936 glucose-1-dehydrogena 96.7 0.19 4.1E-06 43.4 16.7 116 19-138 6-145 (261)
393 PRK07035 short chain dehydroge 96.7 0.049 1.1E-06 46.7 12.7 35 21-57 9-43 (252)
394 COG1091 RfbD dTDP-4-dehydrorha 96.7 0.012 2.7E-07 52.2 9.0 157 21-209 1-167 (281)
395 PRK15438 erythronate-4-phospha 96.7 0.01 2.2E-07 55.0 8.9 61 19-96 115-175 (378)
396 PRK12548 shikimate 5-dehydroge 96.6 0.025 5.4E-07 50.5 11.1 89 7-97 113-208 (289)
397 TIGR01724 hmd_rel H2-forming N 96.6 0.021 4.5E-07 51.6 10.4 66 21-96 1-89 (341)
398 smart00859 Semialdhyde_dh Semi 96.6 0.024 5.2E-07 43.6 9.7 73 22-97 1-74 (122)
399 PRK07831 short chain dehydroge 96.6 0.19 4.2E-06 43.4 16.5 36 20-57 17-53 (262)
400 PF02423 OCD_Mu_crystall: Orni 96.6 0.0074 1.6E-07 54.5 7.7 71 19-96 127-200 (313)
401 TIGR00936 ahcY adenosylhomocys 96.6 0.027 5.9E-07 52.7 11.6 76 9-97 183-259 (406)
402 PRK09072 short chain dehydroge 96.6 0.033 7.1E-07 48.3 11.5 115 20-139 5-140 (263)
403 PLN02494 adenosylhomocysteinas 96.6 0.028 6.1E-07 53.4 11.6 101 8-139 241-343 (477)
404 PRK06139 short chain dehydroge 96.6 0.041 9E-07 50.0 12.4 116 20-138 7-143 (330)
405 PRK07578 short chain dehydroge 96.6 0.019 4.1E-07 47.6 9.5 102 21-138 1-112 (199)
406 PRK09134 short chain dehydroge 96.6 0.029 6.3E-07 48.4 11.0 34 20-55 9-42 (258)
407 TIGR01327 PGDH D-3-phosphoglyc 96.6 0.0093 2E-07 57.7 8.6 96 20-141 138-235 (525)
408 PRK00257 erythronate-4-phospha 96.6 0.0096 2.1E-07 55.3 8.3 62 19-97 115-176 (381)
409 PRK06077 fabG 3-ketoacyl-(acyl 96.6 0.08 1.7E-06 45.2 13.7 33 20-54 6-38 (252)
410 TIGR01035 hemA glutamyl-tRNA r 96.6 0.025 5.4E-07 53.2 11.1 104 17-141 177-281 (417)
411 PRK14194 bifunctional 5,10-met 96.6 0.0081 1.8E-07 53.9 7.4 56 19-99 158-213 (301)
412 PRK06947 glucose-1-dehydrogena 96.6 0.087 1.9E-06 45.0 13.7 33 20-54 2-34 (248)
413 PRK05599 hypothetical protein; 96.6 0.18 4E-06 43.3 15.7 153 21-191 1-176 (246)
414 PRK08291 ectoine utilization p 96.5 0.013 2.8E-07 53.3 8.8 73 20-97 132-206 (330)
415 cd00762 NAD_bind_malic_enz NAD 96.5 0.0068 1.5E-07 53.0 6.5 125 17-166 22-167 (254)
416 PRK07688 thiamine/molybdopteri 96.5 0.016 3.5E-07 52.9 9.4 35 20-56 24-58 (339)
417 cd01080 NAD_bind_m-THF_DH_Cycl 96.5 0.015 3.2E-07 47.9 8.2 57 17-99 41-98 (168)
418 PRK08703 short chain dehydroge 96.5 0.1 2.2E-06 44.4 13.8 37 19-57 5-41 (239)
419 PRK06200 2,3-dihydroxy-2,3-dih 96.5 0.044 9.6E-07 47.4 11.8 36 20-57 6-41 (263)
420 PRK00045 hemA glutamyl-tRNA re 96.5 0.022 4.7E-07 53.7 10.4 103 18-141 180-284 (423)
421 KOG1205 Predicted dehydrogenas 96.5 0.06 1.3E-06 47.9 12.5 117 21-141 13-153 (282)
422 PRK13581 D-3-phosphoglycerate 96.5 0.01 2.2E-07 57.5 8.3 95 20-141 140-236 (526)
423 TIGR01296 asd_B aspartate-semi 96.5 0.0096 2.1E-07 54.4 7.8 69 22-97 1-70 (339)
424 COG0111 SerA Phosphoglycerate 96.5 0.013 2.7E-07 53.4 8.5 64 20-96 142-205 (324)
425 PRK14106 murD UDP-N-acetylmura 96.5 0.021 4.5E-07 53.9 10.3 125 20-155 5-134 (450)
426 PRK06114 short chain dehydroge 96.5 0.055 1.2E-06 46.6 12.2 35 21-57 9-43 (254)
427 PRK05872 short chain dehydroge 96.5 0.11 2.3E-06 46.2 14.3 36 20-57 9-44 (296)
428 PRK08223 hypothetical protein; 96.5 0.023 4.9E-07 50.7 9.8 34 21-56 28-61 (287)
429 PRK08618 ornithine cyclodeamin 96.5 0.015 3.1E-07 52.9 8.7 73 20-97 127-201 (325)
430 TIGR00507 aroE shikimate 5-deh 96.5 0.023 5.1E-07 50.1 9.8 84 7-99 104-189 (270)
431 PRK06407 ornithine cyclodeamin 96.5 0.017 3.8E-07 51.9 9.0 72 20-96 117-190 (301)
432 PRK00421 murC UDP-N-acetylmura 96.5 0.029 6.3E-07 53.2 11.0 122 20-155 7-133 (461)
433 COG0702 Predicted nucleoside-d 96.5 0.018 4E-07 49.7 8.9 73 21-98 1-73 (275)
434 COG1052 LdhA Lactate dehydroge 96.5 0.02 4.4E-07 52.0 9.4 95 20-141 146-242 (324)
435 KOG0409 Predicted dehydrogenas 96.4 0.0099 2.1E-07 53.0 7.0 97 19-127 34-147 (327)
436 PRK00258 aroE shikimate 5-dehy 96.4 0.025 5.4E-07 50.2 9.6 86 7-100 109-197 (278)
437 PRK14192 bifunctional 5,10-met 96.4 0.018 3.8E-07 51.4 8.6 58 17-99 156-213 (283)
438 TIGR01470 cysG_Nterm siroheme 96.4 0.077 1.7E-06 45.0 12.2 69 21-97 10-78 (205)
439 PRK06901 aspartate-semialdehyd 96.4 0.0097 2.1E-07 53.8 6.9 69 20-97 3-73 (322)
440 PRK06141 ornithine cyclodeamin 96.4 0.018 3.9E-07 52.1 8.8 70 20-96 125-197 (314)
441 PRK08217 fabG 3-ketoacyl-(acyl 96.4 0.049 1.1E-06 46.4 11.1 35 21-57 6-40 (253)
442 PRK09496 trkA potassium transp 96.4 0.014 3.1E-07 54.9 8.4 68 21-96 1-73 (453)
443 PRK06940 short chain dehydroge 96.4 0.06 1.3E-06 47.2 11.9 110 22-138 4-126 (275)
444 PRK07775 short chain dehydroge 96.4 0.076 1.6E-06 46.4 12.5 36 20-57 10-45 (274)
445 PRK03562 glutathione-regulated 96.4 0.024 5.2E-07 56.0 10.2 137 20-188 400-541 (621)
446 PLN00203 glutamyl-tRNA reducta 96.4 0.026 5.6E-07 54.5 10.1 105 19-141 265-373 (519)
447 PLN02858 fructose-bisphosphate 96.4 0.022 4.8E-07 61.0 10.5 68 18-97 322-389 (1378)
448 PRK06436 glycerate dehydrogena 96.4 0.016 3.5E-07 52.1 8.2 93 20-142 122-216 (303)
449 PF07991 IlvN: Acetohydroxy ac 96.4 0.021 4.5E-07 46.6 8.0 65 20-96 4-68 (165)
450 cd00757 ThiF_MoeB_HesA_family 96.4 0.025 5.3E-07 48.7 9.0 34 21-56 22-55 (228)
451 PRK08017 oxidoreductase; Provi 96.4 0.049 1.1E-06 46.7 10.9 35 21-57 3-37 (256)
452 KOG1201 Hydroxysteroid 17-beta 96.4 0.024 5.2E-07 50.5 8.9 114 21-137 39-172 (300)
453 TIGR02355 moeB molybdopterin s 96.4 0.025 5.3E-07 49.3 8.9 34 21-56 25-58 (240)
454 PRK06823 ornithine cyclodeamin 96.3 0.024 5.2E-07 51.3 9.1 72 19-96 127-200 (315)
455 PRK08862 short chain dehydroge 96.3 0.26 5.7E-06 42.1 15.2 114 21-138 6-144 (227)
456 PRK12938 acetyacetyl-CoA reduc 96.3 0.098 2.1E-06 44.6 12.5 31 21-53 4-34 (246)
457 PRK13301 putative L-aspartate 96.3 0.034 7.3E-07 49.0 9.5 88 20-134 2-92 (267)
458 cd01485 E1-1_like Ubiquitin ac 96.3 0.032 7E-07 47.0 9.2 34 21-56 20-53 (198)
459 COG0771 MurD UDP-N-acetylmuram 96.3 0.026 5.7E-07 53.3 9.4 129 20-155 7-136 (448)
460 PRK15409 bifunctional glyoxyla 96.3 0.025 5.4E-07 51.4 8.9 92 20-138 145-237 (323)
461 PRK06718 precorrin-2 dehydroge 96.3 0.083 1.8E-06 44.7 11.6 70 20-97 10-79 (202)
462 TIGR02992 ectoine_eutC ectoine 96.3 0.023 4.9E-07 51.7 8.6 72 20-97 129-203 (326)
463 PRK07201 short chain dehydroge 96.3 0.082 1.8E-06 52.1 13.2 116 18-138 369-509 (657)
464 PRK11863 N-acetyl-gamma-glutam 96.3 0.027 5.8E-07 51.0 8.9 27 20-46 2-28 (313)
465 PRK08261 fabG 3-ketoacyl-(acyl 96.3 0.062 1.3E-06 50.6 11.9 117 20-138 210-343 (450)
466 PRK05786 fabG 3-ketoacyl-(acyl 96.3 0.14 3.1E-06 43.3 13.1 35 21-57 6-40 (238)
467 PRK07589 ornithine cyclodeamin 96.3 0.024 5.1E-07 52.1 8.6 71 20-96 129-201 (346)
468 TIGR02685 pter_reduc_Leis pter 96.2 0.2 4.3E-06 43.5 14.3 32 22-55 3-34 (267)
469 PRK08664 aspartate-semialdehyd 96.2 0.01 2.2E-07 54.4 6.3 36 19-55 2-37 (349)
470 KOG1371 UDP-glucose 4-epimeras 96.2 0.025 5.5E-07 50.9 8.5 104 21-128 3-119 (343)
471 PF02882 THF_DHG_CYH_C: Tetrah 96.2 0.028 6E-07 45.9 8.1 57 18-99 34-90 (160)
472 PF01408 GFO_IDH_MocA: Oxidore 96.2 0.062 1.4E-06 40.7 9.7 67 21-96 1-70 (120)
473 PRK13303 L-aspartate dehydroge 96.2 0.067 1.4E-06 47.2 11.1 70 20-97 1-70 (265)
474 PRK06125 short chain dehydroge 96.2 0.21 4.5E-06 43.0 14.2 114 21-138 8-140 (259)
475 PRK06123 short chain dehydroge 96.2 0.15 3.2E-06 43.5 13.0 33 22-56 4-36 (248)
476 COG0289 DapB Dihydrodipicolina 96.2 0.049 1.1E-06 47.8 9.9 75 19-94 1-75 (266)
477 PLN02503 fatty acyl-CoA reduct 96.2 0.07 1.5E-06 52.5 12.1 107 21-128 120-258 (605)
478 PRK06484 short chain dehydroge 96.2 0.054 1.2E-06 51.9 11.2 153 21-191 270-440 (520)
479 PRK05690 molybdopterin biosynt 96.2 0.048 1.1E-06 47.5 9.8 35 20-56 32-66 (245)
480 PF00670 AdoHcyase_NAD: S-aden 96.1 0.023 4.9E-07 46.4 7.1 77 8-97 10-87 (162)
481 PRK06484 short chain dehydroge 96.1 0.077 1.7E-06 50.8 12.0 114 21-138 6-141 (520)
482 PLN02306 hydroxypyruvate reduc 96.1 0.043 9.4E-07 51.1 9.8 101 20-137 165-272 (386)
483 TIGR01082 murC UDP-N-acetylmur 96.1 0.055 1.2E-06 51.2 10.7 129 22-163 1-132 (448)
484 PRK02705 murD UDP-N-acetylmura 96.1 0.037 8.1E-07 52.3 9.5 125 22-155 2-135 (459)
485 PRK09424 pntA NAD(P) transhydr 96.1 0.096 2.1E-06 50.5 12.2 106 17-139 162-287 (509)
486 PRK14179 bifunctional 5,10-met 96.1 0.019 4.1E-07 51.2 6.9 55 20-99 158-212 (284)
487 PRK04308 murD UDP-N-acetylmura 96.1 0.055 1.2E-06 51.0 10.6 127 21-155 6-136 (445)
488 COG2344 AT-rich DNA-binding pr 96.1 0.066 1.4E-06 44.7 9.6 108 6-141 70-181 (211)
489 PRK08410 2-hydroxyacid dehydro 96.1 0.04 8.8E-07 49.7 9.2 92 20-141 145-238 (311)
490 PRK01438 murD UDP-N-acetylmura 96.0 0.064 1.4E-06 51.1 10.7 126 20-155 16-148 (480)
491 PRK06046 alanine dehydrogenase 96.0 0.034 7.4E-07 50.5 8.4 72 19-96 128-201 (326)
492 COG1088 RfbB dTDP-D-glucose 4, 96.0 0.09 2E-06 47.0 10.5 164 21-185 1-174 (340)
493 PRK02006 murD UDP-N-acetylmura 96.0 0.2 4.3E-06 48.0 14.0 129 21-155 8-147 (498)
494 PRK06932 glycerate dehydrogena 96.0 0.035 7.6E-07 50.2 8.2 88 20-138 147-234 (314)
495 PRK08762 molybdopterin biosynt 95.9 0.051 1.1E-06 50.3 9.4 33 21-55 136-168 (376)
496 PRK13403 ketol-acid reductoiso 95.9 0.028 6E-07 51.0 7.3 65 19-96 15-79 (335)
497 PRK06444 prephenate dehydrogen 95.9 0.017 3.7E-07 48.8 5.6 31 21-53 1-31 (197)
498 PRK06199 ornithine cyclodeamin 95.9 0.043 9.3E-07 51.0 8.8 73 20-96 155-231 (379)
499 KOG4039 Serine/threonine kinas 95.9 0.03 6.4E-07 46.5 6.7 116 17-141 15-135 (238)
500 COG0686 Ald Alanine dehydrogen 95.9 0.052 1.1E-06 48.8 8.8 75 19-99 167-242 (371)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=7.3e-61 Score=428.35 Aligned_cols=237 Identities=71% Similarity=1.094 Sum_probs=219.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
|||+||||+|+||+++++.|+.+++++||+|+|++..+|+++||.|+..+..+....+++|++++++|||+||+|+|.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999998899999999999999999999999999558999999999754455432234566789999999999999999
Q ss_pred CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHH
Q 025075 101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~ 180 (258)
+||++|+|++..|+++++++++.|.+++|++|+|++|||+|+||+++++++++.+++|++||||+|.|||+|+++++|++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV 257 (258)
Q Consensus 181 l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~ 257 (258)
+|+++++|+++|||||+||++||+||++.+..+++++++++|.++++++|++|+++|.|||+++||+|.++++++++
T Consensus 161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~a 237 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANS 237 (310)
T ss_pred hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHH
Confidence 99999999999999997799999999999876677667899999999999999999767899999999999999874
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=4.9e-59 Score=417.22 Aligned_cols=236 Identities=63% Similarity=0.990 Sum_probs=214.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 101 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~ 101 (258)
||+||||+|+||+++++.|+.+++++||+|+|+++..|+++||.|......+..+.+.+|++++++|||+||+++|.|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999988999999999999999999999999998889999999987433443222223456899999999999999999
Q ss_pred CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHh
Q 025075 102 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 181 (258)
Q Consensus 102 ~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l 181 (258)
||++|+|++..|+++++++++.|.+++|++++|++|||+|+|++++++++++.+++|++||||+|.|||+||+++||+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075 182 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV 257 (258)
Q Consensus 182 ~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~ 257 (258)
+++|++|+++||||||+++++|+||+++....++++++++|.++++++|++|+++|.|||+++||+|.++++++++
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~a 236 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLS 236 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHH
Confidence 9999999999999996669999999998533356666899999999999999998767899999999999999863
No 3
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=1.1e-57 Score=410.03 Aligned_cols=248 Identities=79% Similarity=1.175 Sum_probs=230.4
Q ss_pred hHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075 10 AKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM 89 (258)
Q Consensus 10 ~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a 89 (258)
+-||.++...+.||+||||+|+||+++++.|..+++++||+|+|+++.+++++||.|+.....+..+.+++|++++++||
T Consensus 8 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 8 RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred hccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence 45889988888899999988999999999999999999999999998888899999998755565544567888999999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeecc
Q 025075 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD 169 (258)
Q Consensus 90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~ld 169 (258)
|+||+++|.|++||++|+|++..|.++++++++.+.+++|+++++++|||+|.+++++++++++.+++||+|+||+|.||
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD 167 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD 167 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHH
Q 025075 170 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL 249 (258)
Q Consensus 170 s~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~ 249 (258)
++||++++|+++|+++.+|+++|+|||||++|||+||++.|..+++++++++|.++++++|++|+++|.|||+++||+|.
T Consensus 168 s~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~ 247 (323)
T PLN00106 168 VVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY 247 (323)
T ss_pred HHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHH
Confidence 99999999999999999999999999988899999999988656777779999999999999999987678999999999
Q ss_pred HHHHhHhc
Q 025075 250 NLRMHASV 257 (258)
Q Consensus 250 a~~~~~~~ 257 (258)
++++++++
T Consensus 248 a~~~ii~a 255 (323)
T PLN00106 248 AAARFADA 255 (323)
T ss_pred HHHHHHHH
Confidence 99999874
No 4
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3.4e-57 Score=401.29 Aligned_cols=227 Identities=41% Similarity=0.618 Sum_probs=201.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+||+|||| |+||+++++.|..+++.+|++|+|++++ +|.++||.|+.+.. ..+.. ++.+ +++++|||+||++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCC-hhhhcCCCEEEEeC
Confidence 59999998 9999999999988888779999999964 89999999998643 33332 2234 47899999999999
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 175 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~ 175 (258)
|.||||||+|+||+..|++|++++++++.+++||++++++|||+| ++++++++.+++|++||||+ |.|||+||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD----~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD----ILTYIAMKFSGFPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH----HHHHHHHHhcCCCccceecccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 55556788889999999999 8999999999
Q ss_pred HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCC----CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHH
Q 025075 176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCS----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247 (258)
Q Consensus 176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~----~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~ 247 (258)
+||+++++++++|++||+|+| ||+|||+||++++ +.+ .+++++++|.++||++|++|++.| |.+ ++||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeH-Gdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccC-CCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 999999999999999999988 8999999999983 322 234578999999999999999998 555 99999
Q ss_pred HHHHHHhHhc
Q 025075 248 RLNLRMHASV 257 (258)
Q Consensus 248 a~a~~~~~~~ 257 (258)
|.++++++++
T Consensus 231 A~a~a~~~~a 240 (313)
T COG0039 231 AAALARMVEA 240 (313)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 5
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2e-54 Score=368.78 Aligned_cols=241 Identities=24% Similarity=0.353 Sum_probs=212.4
Q ss_pred hHHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC-eEEEEeCCCc
Q 025075 5 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA-VVRGFLGQPQ 81 (258)
Q Consensus 5 ~~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~-~v~~~~~~~d 81 (258)
++|.....+.. +.+..||.|+|+ |.||.++++.+..+++.+|++|+|.++. +|+.|||+|..... .-+.. .+.|
T Consensus 6 ~~~~~~~~~~~-~~~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~-~~~D 82 (332)
T KOG1495|consen 6 SELIANSAEEK-EFKHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVV-ASKD 82 (332)
T ss_pred hhhhhcccccc-cccCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceE-ecCc
Confidence 34555555444 344679999998 9999999999999999999999999986 89999999997422 22222 2456
Q ss_pred hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (258)
Q Consensus 82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k 161 (258)
+ .+.+++++||+|||..+++|++|++++++|+.|++.+.+++.+|.|+++++++|||+| ++||+.|+.++||++|
T Consensus 83 y-~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVD----ilTYv~wKLSgfP~nR 157 (332)
T KOG1495|consen 83 Y-SVSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVD----ILTYVTWKLSGFPKNR 157 (332)
T ss_pred c-cccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchH----HHHHHHHHHcCCcccc
Confidence 5 6899999999999999999999999999999999999999999999999999999999 7777889999999999
Q ss_pred EEEE-eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC------------CCCCHHHHHHHHHHHHh
Q 025075 162 LLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP------------CSFTQEETEYLTNRIQN 228 (258)
Q Consensus 162 viG~-t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~------------~~~~~~~~~~i~~~v~~ 228 (258)
|||. |.|||+|||++++++||++|++++++++||| ||+.||+||.+.+. ...+++.|+++.+++.+
T Consensus 158 ViGsGcnLDsaRFryLi~~~Lg~~pss~hgwIiGEH-GdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~ 236 (332)
T KOG1495|consen 158 VIGSGCNLDSARFRYLIGNRLGVHPSSCHGWIIGEH-GDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVD 236 (332)
T ss_pred eeccCcCccHHHHHHHHHHHhCCCcccceEEEeecc-CCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999 89999999998732 12467779999999999
Q ss_pred hHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075 229 GGTEVVEAKAGAGSATLSMRLNLRMHASV 257 (258)
Q Consensus 229 ~~~~i~~~k~g~~~~~~s~a~a~~~~~~~ 257 (258)
.+|+|+++| |+|+|++|.++|+++++
T Consensus 237 sayeviklK---GyTswaIglsva~l~~a 262 (332)
T KOG1495|consen 237 SAYEVIKLK---GYTSWAIGLSVADLAQA 262 (332)
T ss_pred HHHHHHHhc---CchHHHHHHHHHHHHHH
Confidence 999999986 79999999999999864
No 6
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.3e-54 Score=385.91 Aligned_cols=224 Identities=27% Similarity=0.382 Sum_probs=198.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-C--CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-G--AVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~--~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
||+|||+ |+||+++|+.|+.+++++||+|+|+++. +|+++||.|... . ..++... .| +++++|||+||+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence 7999998 9999999999999999999999999875 799999999754 2 2344432 45 47899999999999
Q ss_pred CCCCCCCCc--hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHH
Q 025075 97 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 173 (258)
Q Consensus 97 g~~~~~g~~--r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~ 173 (258)
|.|++||++ |+|++..|++|++++++++.+++|++++|++|||+| ++++++++.++||++||||+ |.|||+||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvD----v~t~~~~k~sg~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD----IAVYIAATEFDYPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHH----HHHHHHHHHhCcChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999 55566778888999999999 89999999
Q ss_pred HHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C------CCHHHHHHHHHHHHhhHHHHhhhhCCCCch
Q 025075 174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243 (258)
Q Consensus 174 ~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~ 243 (258)
++++|+++|++|++|++|||||| ||+++|+||++++.. + .++.++++|.++++++|++|+++| |++
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K---G~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK---GWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecC-CCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc---Cee
Confidence 99999999999999999999999 789999999998421 1 123357899999999999999964 789
Q ss_pred HHHHHHHHHHhHhc
Q 025075 244 TLSMRLNLRMHASV 257 (258)
Q Consensus 244 ~~s~a~a~~~~~~~ 257 (258)
+|++|.++++++++
T Consensus 229 ~~~ia~a~~~ii~a 242 (307)
T cd05290 229 NAGIAKSASRLIKA 242 (307)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999864
No 7
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-53 Score=379.96 Aligned_cols=238 Identities=62% Similarity=0.927 Sum_probs=210.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
-.+|.||+||||+|+||+++++.|...++++||+|+|++..+++++||.|......+.......+++++++|||+||+++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 45778999999889999999999998899999999999666899999999875433433221134368999999999999
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHH
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 176 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~ 176 (258)
|.|++++++|.+++..|+++++++++.+++++|+++++++|||+|.|+++..+.+++.+++||+||||++.|||+||+++
T Consensus 85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~ 164 (321)
T PTZ00325 85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF 164 (321)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987776544446788899999999988999999999
Q ss_pred HHHHhCCCCCceeEEEEecCCCC-ceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhH
Q 025075 177 VAEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 255 (258)
Q Consensus 177 la~~l~v~~~~v~~~v~G~h~g~-~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~ 255 (258)
||+++|++|++|++|||||| || ++||+||++. .+++++++++|.++++++|++|+++|+|||+|+||+|.++++++
T Consensus 165 la~~l~v~~~~V~~~VlGeH-Gd~s~v~~~S~~g--~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~ 241 (321)
T PTZ00325 165 VAEALGMNPYDVNVPVVGGH-SGVTIVPLLSQTG--LSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWS 241 (321)
T ss_pred HHHHhCcChhheEEEEEeec-CCcccccchhccC--CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHH
Confidence 99999999999999999999 67 8999999993 34666779999999999999999998778999999999999998
Q ss_pred hc
Q 025075 256 SV 257 (258)
Q Consensus 256 ~~ 257 (258)
++
T Consensus 242 ~a 243 (321)
T PTZ00325 242 TS 243 (321)
T ss_pred HH
Confidence 64
No 8
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.8e-53 Score=380.88 Aligned_cols=227 Identities=26% Similarity=0.367 Sum_probs=201.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.+||+|||| |+||+++++.|+.+++++||+|+|+++. +|+++||.|+... .... +..++|+ ++++|||+||+++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~-v~~~~dy-~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPK-IEADKDY-SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCE-EEECCCH-HHhCCCCEEEECC
Confidence 459999998 9999999999999999999999999875 7999999999732 1122 2334566 5799999999999
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 175 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~ 175 (258)
|.+++||++|+|++..|+++++++++.|++++|++++|++|||+| ++++++++.+++|++||||+ |.||++|+++
T Consensus 80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~ 155 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRY 155 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH----HHHHHHHHHhCCCHHHEEecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 56667778888999999999 9999999999
Q ss_pred HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C--------CCHHHHHHHHHHHHhhHHHHhhhhCCCCch
Q 025075 176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S--------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243 (258)
Q Consensus 176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~--------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~ 243 (258)
++|+++++++++|+++||||| |++++|+||++++.. + .+++++++|.++++++|++|+++| |++
T Consensus 156 ~la~~l~v~~~~v~~~v~GeH-G~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t 231 (312)
T cd05293 156 LIAERLGVAPSSVHGWIIGEH-GDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK---GYT 231 (312)
T ss_pred HHHHHhCCChhhEEEEEeecC-CCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhc---CCc
Confidence 999999999999999999999 799999999998421 1 223458899999999999999965 789
Q ss_pred HHHHHHHHHHhHhc
Q 025075 244 TLSMRLNLRMHASV 257 (258)
Q Consensus 244 ~~s~a~a~~~~~~~ 257 (258)
+|++|.++++++++
T Consensus 232 ~~~~a~a~~~ii~a 245 (312)
T cd05293 232 SWAIGLSVADLVDA 245 (312)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999864
No 9
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-52 Score=377.03 Aligned_cols=235 Identities=60% Similarity=0.926 Sum_probs=209.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
|||+||||+|.||+++++.|.. .+...+|+|+|+++. .++++|+.|......+... ..+|++++++|+|+||+|+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence 6999999999999999998865 567789999999764 5677899885322233321 145767899999999999999
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHH
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA 178 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la 178 (258)
+++++++|.|++..|+++++++++.|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+|+++++|
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888889899999999999999999999999
Q ss_pred HHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075 179 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV 257 (258)
Q Consensus 179 ~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~ 257 (258)
++++++|++|+++||||||++++||+||++ ...+++++++++|.++++++|++|+++|.|+|+|+||+|.++++++++
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~a 237 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS 237 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHH
Confidence 999999999999999999777999999999 444577777999999999999999999877899999999999999864
No 10
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.1e-53 Score=364.05 Aligned_cols=241 Identities=74% Similarity=1.128 Sum_probs=231.5
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075 16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
+..++.||+|+||+|.+|+.+..+|.+.++++++.|||+....|.+.||.|...+..+..+.+..++++++++||+|||-
T Consensus 24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP 103 (345)
T KOG1494|consen 24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP 103 (345)
T ss_pred cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence 35556799999999999999999999999999999999998899999999999888888887777899999999999999
Q ss_pred CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHH
Q 025075 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANT 175 (258)
Q Consensus 96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~ 175 (258)
||+||||||+|+|++..|+.|+++++..+.++||+|.+.++|||+|++++++++++++.+-|+|+|++|+|.||..|.+.
T Consensus 104 AGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDvVRA~t 183 (345)
T KOG1494|consen 104 AGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANT 183 (345)
T ss_pred CCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC-CceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHh
Q 025075 176 FVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMH 254 (258)
Q Consensus 176 ~la~~l~v~~-~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~ 254 (258)
++++.++++| ++++++|+|+|.|.|++|++|++.|...+++++++.|+.+++.+|.||++.|.|+||+.+|+|+|.++|
T Consensus 184 Fv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~f 263 (345)
T KOG1494|consen 184 FVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKF 263 (345)
T ss_pred HHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHH
Confidence 9999999999 669999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred Hh
Q 025075 255 AS 256 (258)
Q Consensus 255 ~~ 256 (258)
+.
T Consensus 264 a~ 265 (345)
T KOG1494|consen 264 AD 265 (345)
T ss_pred HH
Confidence 85
No 11
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=2.7e-52 Score=378.82 Aligned_cols=226 Identities=26% Similarity=0.405 Sum_probs=199.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
+||+|||+ |.||+++++.|+.+++++||+|+|++++ +|+++||.|+.. ...... ..+.|+ ++++|||+||++||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i-~~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKI-LASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEE-EeCCCH-HHhCCCCEEEECCC
Confidence 69999998 9999999999999999999999999885 799999999863 212332 233454 67999999999999
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHH
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 176 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~ 176 (258)
.|++||++|+|++..|+++++++++.|+++||++++|++|||+|+ +++++++.+++|++||||+ |.||++|++++
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv----~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDV----LTYVAWKLSGFPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHH----HHHHHHHHhCCCHHHEEeecchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999994 5555667778999999999 69999999999
Q ss_pred HHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CC--------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075 177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PC--------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244 (258)
Q Consensus 177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~--------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~ 244 (258)
||+++|+++++|+++||||| |++++|+||++++ +. .+++++++++.++++++|++|++.| |+|+
T Consensus 191 lA~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~K---G~t~ 266 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLK---GYTS 266 (350)
T ss_pred HHHHhCCCccceeeeEEecC-CCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcC---CccH
Confidence 99999999999999999999 7999999999873 11 1344558899999999999999954 7899
Q ss_pred HHHHHHHHHhHhc
Q 025075 245 LSMRLNLRMHASV 257 (258)
Q Consensus 245 ~s~a~a~~~~~~~ 257 (258)
|++|.++++++++
T Consensus 267 ~gia~a~a~ii~a 279 (350)
T PLN02602 267 WAIGYSVASLVRS 279 (350)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 12
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.2e-52 Score=377.88 Aligned_cols=228 Identities=28% Similarity=0.388 Sum_probs=197.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----ChhHHHHHhcCCCCC--eEEEEeCCCchHhhhC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGA--VVRGFLGQPQLENALT 87 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~----~~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~ 87 (258)
+|.||+||||+|+||+++++.|..+++++ ||+|+|+++ .+|+++||.|+.++. .+... + +.+++++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~-~~~~~~~ 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--T-DPEEAFK 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--c-ChHHHhC
Confidence 56899999988999999999999999999 999999965 389999999997321 22221 2 3358999
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 025075 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 165 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kviG~ 165 (258)
|||+||+|||.|++||++|+|++..|++++++++++|.+++| +++++++|||+|+ +++++++.+ +||++||||+
T Consensus 79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv----~t~v~~k~s~g~p~~rViG~ 154 (323)
T TIGR01759 79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT----NALIASKNAPDIPPKNFSAM 154 (323)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH----HHHHHHHHcCCCCHHHEEEe
Confidence 999999999999999999999999999999999999999998 9999999999995 555667777 8999999999
Q ss_pred eeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCC----CC-CCHHH--HHHHHHHHHhhHHHHhhhh
Q 025075 166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----CS-FTQEE--TEYLTNRIQNGGTEVVEAK 237 (258)
Q Consensus 166 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~--~~~i~~~v~~~~~~i~~~k 237 (258)
|.|||+|||++||++++++|++|+ .+||||| |++++|+||++++. .+ +++++ +++|.++++++|++|+++|
T Consensus 155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k 233 (323)
T TIGR01759 155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH-SNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR 233 (323)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEecC-CCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhcc
Confidence 999999999999999999999996 5699999 68999999999853 22 33332 6899999999999999965
Q ss_pred CCCCchHH-HHHHHHHHhHhc
Q 025075 238 AGAGSATL-SMRLNLRMHASV 257 (258)
Q Consensus 238 ~g~~~~~~-s~a~a~~~~~~~ 257 (258)
|+++| ++|.++++++++
T Consensus 234 ---G~t~~~~~a~a~~~iv~a 251 (323)
T TIGR01759 234 ---GASSAASAANAAIDHVRD 251 (323)
T ss_pred ---CCcchHHHHHHHHHHHHH
Confidence 56888 577999999874
No 13
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=4.2e-52 Score=371.42 Aligned_cols=221 Identities=25% Similarity=0.411 Sum_probs=196.1
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 25 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 25 IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
|||+ |+||+++++.|+.+++++||+|+|+++. +|+++||.|+.+.. .+... ..| +++++|||+||+++|.|+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGD-YSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCC-HHHHCCCCEEEECCCCCC
Confidence 6898 9999999999999999999999999875 89999999997432 23332 244 479999999999999999
Q ss_pred CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHHHHH
Q 025075 101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~la~ 179 (258)
+||++|+|++..|+++++++++.|++++|++++|++|||+| ++++++++.+++|++||||+ |.|||+|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH----HHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 55566777788999999999 89999999999999
Q ss_pred HhCCCCCceeEEEEecCCCCceeeccCCCCC----CCCC-------CHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHH
Q 025075 180 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCSF-------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMR 248 (258)
Q Consensus 180 ~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~~-------~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a 248 (258)
++++++++|+++||||| |++++|+||++++ +.++ ++.++++|.++++++|++|+++| |+++|++|
T Consensus 153 ~l~v~~~~V~~~v~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---G~t~~~~a 228 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIG 228 (299)
T ss_pred HhCcCcCeEEEEEEecC-CCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcC---CeeeHHHH
Confidence 99999999999999999 7999999999984 2222 23357899999999999999964 78999999
Q ss_pred HHHHHhHhc
Q 025075 249 LNLRMHASV 257 (258)
Q Consensus 249 ~a~~~~~~~ 257 (258)
.++++++++
T Consensus 229 ~a~~~~i~a 237 (299)
T TIGR01771 229 MAVARIVEA 237 (299)
T ss_pred HHHHHHHHH
Confidence 999999874
No 14
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-52 Score=373.99 Aligned_cols=228 Identities=23% Similarity=0.351 Sum_probs=197.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----ChhHHHHHhcCCCC--CeEEEEeCCCchHhhhC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALT 87 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~ 87 (258)
+|+||+||||+|+||+++++.|...++++ ||+|+|+++ .+|+++||.|+.++ ..+... +.+ +++++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~ 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence 46799999987999999999999999999 999999954 27899999999732 223322 233 58999
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 025075 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 165 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kviG~ 165 (258)
|||+||++||.|++||++|+|++..|++++++++++|.+++ |++++|++|||+|+|| +++++.+ +||++||||+
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t----~v~~k~s~g~p~~rViG~ 155 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNA----LIAMKNAPDLPAENFTAM 155 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHH----HHHHHHcCCCCHHHEEee
Confidence 99999999999999999999999999999999999999988 7999999999999544 4556666 8999999999
Q ss_pred eeccHHHHHHHHHHHhCCCCCceeEE-EEecCCCCceeeccCCCCCC----CC-CCHHH--HHHHHHHHHhhHHHHhhhh
Q 025075 166 TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPP----CS-FTQEE--TEYLTNRIQNGGTEVVEAK 237 (258)
Q Consensus 166 t~lds~R~~~~la~~l~v~~~~v~~~-v~G~h~g~~~vp~~S~~~~~----~~-~~~~~--~~~i~~~v~~~~~~i~~~k 237 (258)
|.|||+||+++||++++++|++|+++ ||||| |+++||+||++++. .+ +++++ +++|.++++++|++|+++|
T Consensus 156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH-G~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k 234 (326)
T PRK05442 156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNH-SATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEAR 234 (326)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEECC-cCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCc
Confidence 99999999999999999999999986 59999 68999999999853 22 33333 6799999999999999965
Q ss_pred CCCCchHHHHHHH-HHHhHhc
Q 025075 238 AGAGSATLSMRLN-LRMHASV 257 (258)
Q Consensus 238 ~g~~~~~~s~a~a-~~~~~~~ 257 (258)
|+++|++|.+ +++++++
T Consensus 235 ---G~t~~~~a~~~~~~iv~a 252 (326)
T PRK05442 235 ---GASSAASAANAAIDHVRD 252 (326)
T ss_pred ---CCccHHHHHHHHHHHHHH
Confidence 6789999999 5899874
No 15
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-50 Score=364.15 Aligned_cols=226 Identities=25% Similarity=0.397 Sum_probs=200.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.+||+|||| |.||+++++.|+..++++||+|+|++++ +|+++||.|+... ..+... +++ +++++|||+||+++
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~-~~~~~~adivIita 81 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGD-YSDCKDADLVVITA 81 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCC-HHHhCCCCEEEEec
Confidence 369999998 9999999999999999999999999875 7999999998642 233333 244 47899999999999
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 175 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~ 175 (258)
|.|++||++|+|++..|+++++++++.+++++|+++++++|||+|+ +++++++.+++|++||||+ |.|||+|+++
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~----~~~~~~k~sg~p~~~viG~gt~LDs~R~~~ 157 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDI----LTYATWKLSGFPKERVIGSGTSLDSARFRY 157 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHH----HHHHHHHHhCCCHHHEeecCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 4455666678999999999 7999999999
Q ss_pred HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC-----------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075 176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244 (258)
Q Consensus 176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~ 244 (258)
++|+++|+++++|+++||||| |++++|+||++++.. .+++++++++.++++++|++|++.| |+++
T Consensus 158 ~la~~l~v~~~~V~~~viGeH-G~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---g~t~ 233 (315)
T PRK00066 158 MLSEKLDVDPRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK---GATY 233 (315)
T ss_pred HHHHHhCCCcccEEEEEEecC-CCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcC---Ceeh
Confidence 999999999999999999999 889999999998521 1455678899999999999999964 6899
Q ss_pred HHHHHHHHHhHhc
Q 025075 245 LSMRLNLRMHASV 257 (258)
Q Consensus 245 ~s~a~a~~~~~~~ 257 (258)
|++|.++++++++
T Consensus 234 ~~~a~~~~~i~~a 246 (315)
T PRK00066 234 YGIAMALARITKA 246 (315)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 16
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=7.8e-50 Score=365.24 Aligned_cols=228 Identities=24% Similarity=0.305 Sum_probs=193.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--eCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhh
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENAL 86 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~--D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~ 86 (258)
.++.||+||||+|+||+++++.|..+++++ +|+|+ |++++ +|+++||.|+.++ ..+.. .+.+ ++++
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i--~~~~-y~~~ 118 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSI--GIDP-YEVF 118 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEE--ecCC-HHHh
Confidence 346899999988999999999999999998 57777 55554 7999999998732 12322 2334 5899
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~ 165 (258)
+|||+||+++|.|++||++|+|++..|++|++++++.|++++ |++++|++|||+|+| ++++++.+++||+|+||+
T Consensus 119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~----t~v~~k~sg~~~~rviG~ 194 (387)
T TIGR01757 119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTN----ALIAMKNAPNIPRKNFHA 194 (387)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHH----HHHHHHHcCCCcccEEEe
Confidence 999999999999999999999999999999999999999987 999999999999954 455667778999999999
Q ss_pred -eeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCC----CCC-CCHH--HHHHHHHHHHhhHHHHhhh
Q 025075 166 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKP----PCS-FTQE--ETEYLTNRIQNGGTEVVEA 236 (258)
Q Consensus 166 -t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~----~~~-~~~~--~~~~i~~~v~~~~~~i~~~ 236 (258)
|.|||+|+|++||+++++++++|+ ++||||| |+++||+||++++ +.+ +++. .+++|.++++++|++|++.
T Consensus 195 gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH-Gds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~ 273 (387)
T TIGR01757 195 LTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH-STTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKK 273 (387)
T ss_pred cchhHHHHHHHHHHHHHCcChhHcceeEEEecC-CCcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999995 9999999 7899999999974 222 2222 2689999999999999996
Q ss_pred hCCCCchHH-HHHHHHHHhHh
Q 025075 237 KAGAGSATL-SMRLNLRMHAS 256 (258)
Q Consensus 237 k~g~~~~~~-s~a~a~~~~~~ 256 (258)
| |+++| ++|.++++++.
T Consensus 274 K---G~t~~~s~a~ai~~~i~ 291 (387)
T TIGR01757 274 W---GRSSAASTAVSIADAIK 291 (387)
T ss_pred c---CchhHHHHHHHHHHHHH
Confidence 5 44555 99999998875
No 17
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.3e-50 Score=361.06 Aligned_cols=226 Identities=30% Similarity=0.435 Sum_probs=194.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC--C--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN--T--PGVTADISHMDTG--AVVRGFLGQPQLENALTGM 89 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~--~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~a 89 (258)
.||+||||+|+||+++++.|..+++++ +|+|+|+++ + +++++||.|..++ ..... . .+.+++++||
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i-~--~~~~~~~~~a 77 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI-T--TDPEEAFKDV 77 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE-e--cChHHHhCCC
Confidence 389999988999999999999999988 599999987 4 7899999998632 12222 1 2346899999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCC-CCCCcEEEEee
Q 025075 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTM 167 (258)
Q Consensus 90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~-~~~~kviG~t~ 167 (258)
|+||++||.|++||++|+|++..|+++++++++.|++++ |++++|++|||+|+ +++++++.++ +|++||||+|.
T Consensus 78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~----~t~~~~k~sg~~p~~~vig~t~ 153 (323)
T cd00704 78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANT----NALIALKNAPNLPPKNFTALTR 153 (323)
T ss_pred CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHH----HHHHHHHHcCCCCHHHEEEeeH
Confidence 999999999999999999999999999999999999996 99999999999995 4555677778 59999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCCC----C-----CCHH-HHHHHHHHHHhhHHHHhhh
Q 025075 168 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----S-----FTQE-ETEYLTNRIQNGGTEVVEA 236 (258)
Q Consensus 168 lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~~----~-----~~~~-~~~~i~~~v~~~~~~i~~~ 236 (258)
|||+|||++||++++++|++|+ ++||||| |++++|+||++++.. . ++++ ..++|.++++++|++|+++
T Consensus 154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~ 232 (323)
T cd00704 154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNH-SNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK 232 (323)
T ss_pred HHHHHHHHHHHHHhCcCHHHceeeeEEecc-cCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc
Confidence 9999999999999999999995 6899999 679999999997421 1 3332 3678999999999999997
Q ss_pred hCCCCchHHH-HHHHHHHhHhc
Q 025075 237 KAGAGSATLS-MRLNLRMHASV 257 (258)
Q Consensus 237 k~g~~~~~~s-~a~a~~~~~~~ 257 (258)
| |+++|+ +|.++++++++
T Consensus 233 k---g~t~~~~~a~a~~~iv~a 251 (323)
T cd00704 233 R---GASSAASAAKAIADHVKD 251 (323)
T ss_pred c---CcchhHHHHHHHHHHHHH
Confidence 5 567775 69999999874
No 18
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=8.5e-50 Score=369.97 Aligned_cols=229 Identities=24% Similarity=0.285 Sum_probs=196.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhh
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENA 85 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~-------~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a 85 (258)
..++.||+||||+|+||+++++.|+.+ +++.||+|+|++++ +|+++||.|+.++. .+.. .+.| +++
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i--~~~~-ye~ 173 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI--GIDP-YEV 173 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE--ecCC-HHH
Confidence 345689999998899999999999988 77779999999886 89999999987422 2322 2334 589
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhh-hCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075 86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164 (258)
Q Consensus 86 ~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~-~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG 164 (258)
++|||+||+++|.|++||++|+|++..|++|++++++.|++ ++|++++|++|||+|+ +++++++.++++|+|+||
T Consensus 174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv----~t~v~~k~sg~~~~rViG 249 (444)
T PLN00112 174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNT----NALICLKNAPNIPAKNFH 249 (444)
T ss_pred hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHH----HHHHHHHHcCCCCcceEE
Confidence 99999999999999999999999999999999999999999 5999999999999995 455567777899999999
Q ss_pred E-eeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCC----CC-CCHHH--HHHHHHHHHhhHHHHhh
Q 025075 165 V-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----CS-FTQEE--TEYLTNRIQNGGTEVVE 235 (258)
Q Consensus 165 ~-t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~--~~~i~~~v~~~~~~i~~ 235 (258)
+ |.|||+||+++||+++|+++++|+ ++||||| |+++||+||++++. .+ +++.+ +++|.++++++|++|++
T Consensus 250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH-Gdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~ 328 (444)
T PLN00112 250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK 328 (444)
T ss_pred eeccHHHHHHHHHHHHHhCcCHHHcccceEEecC-CCceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence 9 899999999999999999999995 6999999 78999999999852 22 22223 68999999999999999
Q ss_pred hhCCCCchHH-HHHHHHHHhHh
Q 025075 236 AKAGAGSATL-SMRLNLRMHAS 256 (258)
Q Consensus 236 ~k~g~~~~~~-s~a~a~~~~~~ 256 (258)
.| |+++| |+|.++++++.
T Consensus 329 ~k---G~t~~~s~a~ai~~~I~ 347 (444)
T PLN00112 329 KW---GRSSAASTAVSIADAIK 347 (444)
T ss_pred cc---CchhHHHHHHHHHHHHH
Confidence 65 44555 99999998875
No 19
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=1.9e-49 Score=356.02 Aligned_cols=225 Identities=27% Similarity=0.391 Sum_probs=198.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+||+|||+ |.+|+++++.|+..|+..+|+|+|++++ ++.++||.|.... ...... ..++ +++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~-~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDY-SDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCH-HHhCCCCEEEEcc
Confidence 38999998 9999999999999998889999999886 6788999887632 222322 2344 6799999999999
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 175 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~ 175 (258)
|.|+++|++|+|++.+|+++++++++.|++++|++++|++|||+| ++++++++.+++|++||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d----~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH----HHHHHHHHHhCcCHHHEeeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 55666777788999999999 7999999999
Q ss_pred HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHH
Q 025075 176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245 (258)
Q Consensus 176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~ 245 (258)
++|+++++++++|+++|||+| |++++|+||++++. . .+.+++++++.++++++|++|+++| |+++|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~H-g~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGK---GATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecC-CCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHcc---CccHH
Confidence 999999999999999999999 78999999998832 1 2345668999999999999999964 78999
Q ss_pred HHHHHHHHhHhc
Q 025075 246 SMRLNLRMHASV 257 (258)
Q Consensus 246 s~a~a~~~~~~~ 257 (258)
++|.++++++++
T Consensus 229 ~~a~a~~~~~~a 240 (306)
T cd05291 229 GIATALARIVKA 240 (306)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 20
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-49 Score=354.09 Aligned_cols=228 Identities=33% Similarity=0.542 Sum_probs=201.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
.+||+|||| |+||+++++.++..++ .+|+|+|++++ .++++|+.|..... ..+ +..++|++ +++|||+||++
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~-i~~~~d~~-~l~~ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNIN-ILGTNNYE-DIKDSDVVVIT 80 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeE-EEeCCCHH-HhCCCCEEEEC
Confidence 469999998 9999999999998887 58999999885 68889999985322 222 23346765 89999999999
Q ss_pred CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-eccHHHHH
Q 025075 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRAN 174 (258)
Q Consensus 96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~lds~R~~ 174 (258)
+|.++++|++|.|++..|.++++++++.|+++||++|+|++|||+| ++++++++.+++|++|++|+| .||++|++
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d----i~t~~~~~~s~~p~~rviG~gt~lds~R~~ 156 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFR 156 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHhhCCCcccEEEecchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 555667777889999999995 89999999
Q ss_pred HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075 175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244 (258)
Q Consensus 175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~ 244 (258)
+++|++++++|++|+++|+||| |++++|+||++++. . .+++++++++.++++++|++|++++ |||+++
T Consensus 157 ~~la~~l~v~~~~v~~~viGeH-g~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t~ 234 (319)
T PTZ00117 157 CNLAEKLGVSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSAF 234 (319)
T ss_pred HHHHHHhCCCcccceEEEeecC-CCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCChH
Confidence 9999999999999999999999 79999999999742 1 2566678999999999999999986 789999
Q ss_pred HHHHHHHHHhHhc
Q 025075 245 LSMRLNLRMHASV 257 (258)
Q Consensus 245 ~s~a~a~~~~~~~ 257 (258)
||+|.++++++++
T Consensus 235 ~~~a~a~~~~~~a 247 (319)
T PTZ00117 235 FAPAAAIVAMIEA 247 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 21
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.5e-49 Score=358.03 Aligned_cols=228 Identities=22% Similarity=0.333 Sum_probs=197.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----ChhHHHHHhcCCCC--CeEEEEeCCCchHhhhC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALT 87 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~ 87 (258)
+|+||+||||+|+||+++++.|..+++++ ||+|+|+++ .+|+++||.|+.++ ..+... +.+ +++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence 46799999988999999999999999999 999999954 37899999998732 233332 334 58999
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 025075 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 165 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kviG~ 165 (258)
|||+||+|||.|++||++|+|++..|++++++++++|++++ |++++|++|||+|+|| +++++.+ ++|++||+|+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t----~~~~k~sg~~p~~~ViG~ 153 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNA----LIAMKNAPDIPPDNFTAM 153 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHH----HHHHHHcCCCChHheEEe
Confidence 99999999999999999999999999999999999999999 5999999999999554 4555666 5999999999
Q ss_pred eeccHHHHHHHHHHHhCCCCCceeE-EEEecCCCCceeeccCCCCCC----CC-CCHH--HHHHHHHHHHhhHHHHhhhh
Q 025075 166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPP----CS-FTQE--ETEYLTNRIQNGGTEVVEAK 237 (258)
Q Consensus 166 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g~~~vp~~S~~~~~----~~-~~~~--~~~~i~~~v~~~~~~i~~~k 237 (258)
|.||++||++.+|+++|+++++|++ +|||+| |++++|+||++++. .+ +.+. ++++|.++++++|++|+++|
T Consensus 154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k 232 (322)
T cd01338 154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH-SPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR 232 (322)
T ss_pred hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC-cccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCc
Confidence 9999999999999999999999998 569999 68999999998742 22 3443 36899999999999999965
Q ss_pred CCCCchHHHHH-HHHHHhHhc
Q 025075 238 AGAGSATLSMR-LNLRMHASV 257 (258)
Q Consensus 238 ~g~~~~~~s~a-~a~~~~~~~ 257 (258)
|+++|+++ .++++++++
T Consensus 233 ---G~t~~~~~a~a~~~iv~a 250 (322)
T cd01338 233 ---GASSAASAANAAIDHMRD 250 (322)
T ss_pred ---CCccHHHHHHHHHHHHHH
Confidence 67899999 599999874
No 22
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=2.3e-49 Score=354.92 Aligned_cols=228 Identities=30% Similarity=0.490 Sum_probs=199.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeE-EEEeCCCchHhhhCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVV-RGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v-~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
|||+|||+ |.||+.+|+.++.+|+. +|+|+|+++. +++++|+.|....... ..+..++|++ ++++||+||+|+|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~-~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA-DTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH-HhCCCCEEEEcCC
Confidence 59999998 99999999999998887 7999999875 5677888876531111 1122356764 5999999999999
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-eccHHHHHHH
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTF 176 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~lds~R~~~~ 176 (258)
.|+++|++|+|++..|++++++++++|.+++|++++|++|||+| ++++++++.+|+|++||||+| .|||+|++++
T Consensus 79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~d----i~t~~~~~~sg~~~~rviG~g~~lds~R~~~~ 154 (305)
T TIGR01763 79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD----AMTYVAWQKSGFPKERVIGQAGVLDSARFRTF 154 (305)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHEEEeccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 566677788889999999995 8999999999
Q ss_pred HHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHH
Q 025075 177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNL 251 (258)
Q Consensus 177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~ 251 (258)
+|+++++++++|+++||||| ||+++|+||++++. .+ ++++++++|.++++++|++|+++| |||+++|++|.++
T Consensus 155 la~~l~v~~~~v~~~v~GeH-g~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~~ 232 (305)
T TIGR01763 155 IAMELGVSVQDVTACVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAASV 232 (305)
T ss_pred HHHHhCcCHHHeeeeEEecC-CCcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHH
Confidence 99999999999999999999 89999999998742 22 345568999999999999999987 7899999999999
Q ss_pred HHhHhc
Q 025075 252 RMHASV 257 (258)
Q Consensus 252 ~~~~~~ 257 (258)
++++++
T Consensus 233 ~~i~~a 238 (305)
T TIGR01763 233 VEMVEA 238 (305)
T ss_pred HHHHHH
Confidence 999874
No 23
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=2.5e-49 Score=354.16 Aligned_cols=224 Identities=31% Similarity=0.451 Sum_probs=198.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
|+|||+ |.||+++++.|+..++++||+|+|++++ .++++||.|.... ...+... ++| +++++|||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence 689998 9999999999999999999999999885 7899999998753 2223222 345 46999999999999999
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHHHH
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA 178 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~la 178 (258)
+++|++|+|++.+|+++++++++.|+++||++++|++|||+| ++++++++.+++|++||+|+ |.|||+|+++++|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d----~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHH----HHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 56667778888999999999 7999999999999
Q ss_pred HHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC---CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHH
Q 025075 179 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS---FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNL 251 (258)
Q Consensus 179 ~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~---~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~ 251 (258)
+++++++++|+++|+||| |++++|+||++++. .+ .+++++++|.++++++|++|+++| |+++|++|.++
T Consensus 154 ~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k---g~t~~~~a~a~ 229 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAI 229 (300)
T ss_pred HHhCCCcccEEEEEEecc-CCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHcc---CcchHHHHHHH
Confidence 999999999999999999 78999999999842 22 134568999999999999999964 78999999999
Q ss_pred HHhHhc
Q 025075 252 RMHASV 257 (258)
Q Consensus 252 ~~~~~~ 257 (258)
++++++
T Consensus 230 ~~~~~a 235 (300)
T cd00300 230 ADIVKS 235 (300)
T ss_pred HHHHHH
Confidence 999874
No 24
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-48 Score=352.51 Aligned_cols=228 Identities=35% Similarity=0.618 Sum_probs=201.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
++||+|||| |.||+++++.++..++. +|+|+|++++ +++++|+.|... ....+. ..++|+ ++++|||+||++
T Consensus 6 ~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I-~~~~d~-~~l~~aDiVI~t 81 (321)
T PTZ00082 6 RRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKV-IGTNNY-EDIAGSDVVIVT 81 (321)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEE-EECCCH-HHhCCCCEEEEC
Confidence 369999998 99999999999999984 6999999886 678899998752 122232 234676 689999999999
Q ss_pred CCCCCCCCC-----chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-ecc
Q 025075 96 AGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLD 169 (258)
Q Consensus 96 ag~~~~~g~-----~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~ld 169 (258)
+|.|+++|+ +|.+++..|+++++++++.|++++|++++|++|||+| ++++++++.+++|++||+|+| .||
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d----i~t~~~~~~sg~p~~rviGlgt~ld 157 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD----VMVKLLQEHSGLPKNKVCGMAGVLD 157 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHhcCCChhhEEEecCccc
Confidence 999999999 9999999999999999999999999999999999999 555667778889999999995 999
Q ss_pred HHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C-----C-CCHHHHHHHHHHHHhhHHHHhhhhCC
Q 025075 170 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C-----S-FTQEETEYLTNRIQNGGTEVVEAKAG 239 (258)
Q Consensus 170 s~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~-----~-~~~~~~~~i~~~v~~~~~~i~~~k~g 239 (258)
++|+++++|+++++++++|+++|+||| |+++||+||++++. . . ++++++++|.++++++|++|+++| |
T Consensus 158 s~R~~~~la~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-g 235 (321)
T PTZ00082 158 SSRLRTYIAEKLGVNPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-G 235 (321)
T ss_pred HHHHHHHHHHHhCCCcccceeeEEecC-CCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-C
Confidence 999999999999999999999999999 88999999999742 1 1 456678999999999999999987 7
Q ss_pred CCchHHHHHHHHHHhHhc
Q 025075 240 AGSATLSMRLNLRMHASV 257 (258)
Q Consensus 240 ~~~~~~s~a~a~~~~~~~ 257 (258)
||+++||+|.++++++++
T Consensus 236 kg~t~~~ia~a~~~i~~a 253 (321)
T PTZ00082 236 TGSAYFAPAAAAIEMAEA 253 (321)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 899999999999999874
No 25
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=2.3e-48 Score=350.53 Aligned_cols=228 Identities=26% Similarity=0.346 Sum_probs=195.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCCC----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEE
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV 92 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV 92 (258)
||+||||+|+||+++++.|..+++++ +|+|+|+++. +++++||.|+.++.... +..+++.+++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~-~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDG-VVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCc-eeccCChHHHhCCCCEE
Confidence 69999988999999999999988885 7999999653 68899999997432211 22233546899999999
Q ss_pred EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccH
Q 025075 93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV 170 (258)
Q Consensus 93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds 170 (258)
|++||.|++++++|++++..|++++++++++|.+++ |++++|++|||+|+ +++++++.++++|+++||+ |.|||
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv----~t~v~~~~sg~~~~~vig~gt~LDs 155 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANT----NALVLSNYAPSIPPKNFSALTRLDH 155 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH----HHHHHHHHcCCCCcceEEEeeehHH
Confidence 999999999999999999999999999999999995 99999999999994 5556667776777789999 89999
Q ss_pred HHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCC-C----CC----CHHH--HHHHHHHHHhhHHHHhhhhC
Q 025075 171 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----SF----TQEE--TEYLTNRIQNGGTEVVEAKA 238 (258)
Q Consensus 171 ~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~-~----~~----~~~~--~~~i~~~v~~~~~~i~~~k~ 238 (258)
+|||++||++++++|++|+ ++||||| |+++||+||++++. . ++ ++++ +++|.++++++|++|+++|
T Consensus 156 ~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (324)
T TIGR01758 156 NRALAQVAERAGVPVSDVKNVIIWGNH-SSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233 (324)
T ss_pred HHHHHHHHHHhCCChhhceEeEEEECC-CCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence 9999999999999999996 6999999 78999999999765 2 22 2222 5789999999999999976
Q ss_pred CCCchHHHHHHHHHHhHhc
Q 025075 239 GAGSATLSMRLNLRMHASV 257 (258)
Q Consensus 239 g~~~~~~s~a~a~~~~~~~ 257 (258)
+++++|++|.++++++++
T Consensus 234 -~~~t~~~ia~~~~~i~~a 251 (324)
T TIGR01758 234 -KLSSALSAAKAAVDQMHD 251 (324)
T ss_pred -CCCHHHHHHHHHHHHHHH
Confidence 358999999999999873
No 26
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.8e-47 Score=343.32 Aligned_cols=225 Identities=31% Similarity=0.474 Sum_probs=198.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
|||+|||+ |.||+++++.|+..|++++|+|+|++++ +++++|+.|.... ...... ++|+ +++++||+||+++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence 59999998 9999999999999998889999999885 6789999988632 223322 3455 68999999999999
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHH
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 176 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~ 176 (258)
.+++++++|.+++..|+++++++++.|++++|+++++++|||+| ++++++++.+++|++||||+ |.|||+|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d----~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999 45556667778999999999 89999999999
Q ss_pred HHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C--------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075 177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C--------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244 (258)
Q Consensus 177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~--------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~ 244 (258)
+|+++++++++|+++|+||| |++++|+||++++. . .++++++++|.++++++|++|+++| |+++
T Consensus 153 la~~~~v~~~~v~~~viGeH-g~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k---g~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK---GATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccC-CCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC---CccH
Confidence 99999999999999999999 79999999998732 1 2344568999999999999999965 6899
Q ss_pred HHHHHHHHHhHhc
Q 025075 245 LSMRLNLRMHASV 257 (258)
Q Consensus 245 ~s~a~a~~~~~~~ 257 (258)
|++|.++++++++
T Consensus 229 ~~~a~a~~~i~~a 241 (308)
T cd05292 229 YAIGLALARIVEA 241 (308)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.2e-47 Score=343.55 Aligned_cols=230 Identities=24% Similarity=0.349 Sum_probs=194.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----ChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM 89 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a 89 (258)
+|.||+||||+|+||+++++.|..+++++ +|+|+|+++ .+++++|+.|+.++..-.. ..+.+++++++||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~-~~~~~~~~~l~~a 79 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSV-VATTDPEEAFKDV 79 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCc-eecCCHHHHhCCC
Confidence 36799999999999999999999988875 999999965 2677889999763211111 1235667899999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHh-CCCCCCcEEEE-e
Q 025075 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV-T 166 (258)
Q Consensus 90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~-~~~~~~kviG~-t 166 (258)
|+||++||.+++++++|.+++..|+++++++++.|++++ |++++|++|||+|+|+ +++++. +++|+++ ||+ |
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t----~~~~k~~~~~~~~~-ig~gt 154 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNA----LILLKYAPSIPKEN-FTALT 154 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHH----HHHHHHcCCCCHHH-EEeee
Confidence 999999999999999999999999999999999999997 7999999999999544 455566 5777777 777 8
Q ss_pred eccHHHHHHHHHHHhCCCCCceeE-EEEecCCCCceeeccCCCCCC----C-C----CCHH--HHHHHHHHHHhhHHHHh
Q 025075 167 MLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPP----C-S----FTQE--ETEYLTNRIQNGGTEVV 234 (258)
Q Consensus 167 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g~~~vp~~S~~~~~----~-~----~~~~--~~~~i~~~v~~~~~~i~ 234 (258)
.|||+|+++++|+++++++++|+. +||||| |++++|+||++++. . + ++++ ++++|.++++++|++|+
T Consensus 155 ~LDs~R~r~~la~~l~v~~~~v~~~~V~GeH-G~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii 233 (325)
T cd01336 155 RLDHNRAKSQIALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVI 233 (325)
T ss_pred hHHHHHHHHHHHHHhCcChhhceEeEEEEcC-CCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHH
Confidence 999999999999999999999975 599999 67999999999764 2 1 2222 26899999999999999
Q ss_pred hhhCCCCchHHHHHHHHHHhHhc
Q 025075 235 EAKAGAGSATLSMRLNLRMHASV 257 (258)
Q Consensus 235 ~~k~g~~~~~~s~a~a~~~~~~~ 257 (258)
++| +|+++||+|.++++++++
T Consensus 234 ~~~--~g~t~~~~a~~~~~i~~a 254 (325)
T cd01336 234 KAR--KLSSAMSAAKAICDHVHD 254 (325)
T ss_pred Hcc--ccchHHHHHHHHHHHHHH
Confidence 975 478999999999999874
No 28
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=3e-46 Score=335.47 Aligned_cols=227 Identities=27% Similarity=0.457 Sum_probs=197.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII 94 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~--~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi 94 (258)
|||+|+||+|.+|+++++.|+..|+.++|+|+|+++ + ++.++|+.|.... ...+ +..+.|+ +++++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~-i~~~~d~-~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAE-IKISSDL-SDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcE-EEECCCH-HHhCCCCEEEE
Confidence 699999988999999999999999988999999965 3 6788899887432 1222 2334564 67999999999
Q ss_pred cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHH
Q 025075 95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 173 (258)
Q Consensus 95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~ 173 (258)
++|.|+++|++|.|++..|+++++++++.|.+++|++++|+++||+|. +++++++.+++|++|+||+ |.|||+|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~----~t~~~~~~~g~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDV----MTYKALKESGFDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHHHhcCCCHHHEeeccchHHHHHH
Confidence 999999999999999999999999999999999999999999999995 4555667778999999999 69999999
Q ss_pred HHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C---CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHH
Q 025075 174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S---FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 246 (258)
Q Consensus 174 ~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~---~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s 246 (258)
+++||+++++++++|+++|+||| ||+++|+||++++.. + ..+.++++|.++++++|++|+++| |+++||
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeH-g~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~ 230 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG 230 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecC-CCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence 99999999999999999999999 789999999998421 1 224557899999999999999976 567899
Q ss_pred HHHHHHHhHhc
Q 025075 247 MRLNLRMHASV 257 (258)
Q Consensus 247 ~a~a~~~~~~~ 257 (258)
+|.++++++++
T Consensus 231 ~a~~~~~ii~a 241 (309)
T cd05294 231 PASAISNLVRT 241 (309)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 29
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-45 Score=331.03 Aligned_cols=228 Identities=34% Similarity=0.573 Sum_probs=198.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
|+||+|||| |.||+++++.++..++. +|+|+|++++ ++..+|+.|..... ..+ +..++|+ +++++||+||++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~-i~~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTK-ITGTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcE-EEeCCCH-HHHCCCCEEEEC
Confidence 579999998 99999999999998887 9999999885 67788888764321 122 2234566 679999999999
Q ss_pred CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHH
Q 025075 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN 174 (258)
Q Consensus 96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~ 174 (258)
+|.|+++|++|.|++.+|+++++++++.|++++|++++|++|||+| ++++++++.+++||+|+||+ |.|||+|++
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d----~~~~~~~~~s~~~~~~viG~gt~lds~r~~ 153 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD----AMTYVALKESGFPKNRVIGMAGVLDSARFR 153 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCcccEEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999 55556677778999999999 599999999
Q ss_pred HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHH
Q 025075 175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL 249 (258)
Q Consensus 175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~ 249 (258)
++||+++++++++|+++|+|+| |++++|+||++++. .+ ++++.+++|.+++++++++|++.+ +|+++.|++|.
T Consensus 154 ~~la~~l~v~~~~v~~~viGeh-g~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~ 231 (307)
T PRK06223 154 TFIAEELNVSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231 (307)
T ss_pred HHHHHHhCcChhhCcccEEcCC-CCcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence 9999999999999999999999 78999999999742 22 455568999999999999999985 57889999999
Q ss_pred HHHHhHhc
Q 025075 250 NLRMHASV 257 (258)
Q Consensus 250 a~~~~~~~ 257 (258)
++++++++
T Consensus 232 ~~~~ii~a 239 (307)
T PRK06223 232 SIAEMVEA 239 (307)
T ss_pred HHHHHHHH
Confidence 99998763
No 30
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.3e-45 Score=330.25 Aligned_cols=224 Identities=36% Similarity=0.591 Sum_probs=196.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
|+|||| |.||+.+++.|+..++. +|+|+|++++ +++.+|+.|.... ...+ +..++|+ ++++|||+||+++|.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~-I~~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTK-VTGTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeE-EEEcCCH-HHhCCCCEEEEecCC
Confidence 689998 99999999999998887 9999999986 5677888876421 1222 2234564 679999999999999
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-eccHHHHHHHH
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFV 177 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~lds~R~~~~l 177 (258)
|+++|++|.+++.+|++++++++++|++++|++++|++|||+| ++++++++.+++||+|++|+| .||++|+++++
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~d----i~t~~~~~~s~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD----VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCHHHEEEecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 555666777789999999996 89999999999
Q ss_pred HHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHH
Q 025075 178 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLR 252 (258)
Q Consensus 178 a~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~ 252 (258)
|++|++++++|+++|+|+| |++++|+||++++. .+ ++++++++|.++++++|++|++.| |+|+++|++|.+++
T Consensus 153 a~~l~v~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~ 230 (300)
T cd01339 153 AEELGVSVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA 230 (300)
T ss_pred HHHhCCCccceEEEEEeCC-CCcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence 9999999999999999999 88999999999853 12 345568999999999999999988 78999999999999
Q ss_pred HhHh
Q 025075 253 MHAS 256 (258)
Q Consensus 253 ~~~~ 256 (258)
++++
T Consensus 231 ~i~~ 234 (300)
T cd01339 231 EMVE 234 (300)
T ss_pred HHHH
Confidence 9986
No 31
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=5.1e-45 Score=326.10 Aligned_cols=202 Identities=24% Similarity=0.372 Sum_probs=174.0
Q ss_pred EEEEEeCCC--C--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHH
Q 025075 48 VLHLYDVVN--T--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG 123 (258)
Q Consensus 48 ei~L~D~~~--~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~ 123 (258)
.|+|+|+++ + +|+++||.|+.++..-... .++|.+++++|||+||++||.|++||++|+|++..|+++++++++.
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~-~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~ 93 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVV-ATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASA 93 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcE-ecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 899999988 5 7899999998732111111 2345468999999999999999999999999999999999999999
Q ss_pred hhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHHHHHHhCCCCCce-eEEEEecCCCCc
Q 025075 124 IAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVT 200 (258)
Q Consensus 124 i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~h~g~~ 200 (258)
|.++ +|++++|++|||+|+ +++++++.+++|++|+||+ |.|||+|||++||+++++++++| +++||||| |++
T Consensus 94 i~~~~~p~aivivvsNPvDv----~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeH-G~s 168 (309)
T PLN00135 94 LEKHAAPDCKVLVVANPANT----NALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNH-SST 168 (309)
T ss_pred HHHhcCCCeEEEEeCCcHHH----HHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcC-CCc
Confidence 9996 899999999999995 5555667778999999999 89999999999999999999999 68999999 679
Q ss_pred eeeccCCCCC----CC----C-CCHHH--HHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075 201 ILPLLSQVKP----PC----S-FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV 257 (258)
Q Consensus 201 ~vp~~S~~~~----~~----~-~~~~~--~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~ 257 (258)
+||+||++++ .. + +.+++ .++|.++++++|++|+++| ||+++||+|.++++++++
T Consensus 169 ~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~a 234 (309)
T PLN00135 169 QYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRD 234 (309)
T ss_pred eeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHH
Confidence 9999999986 21 2 23333 6889999999999999974 579999999999999874
No 32
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.5e-44 Score=333.40 Aligned_cols=226 Identities=15% Similarity=0.139 Sum_probs=190.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCC--CC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhh
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVV--NT--PGVTADISHMDTGA--VVRGFLGQPQLENAL 86 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~--~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~ 86 (258)
.++.+|+|+||+|++|+++.+.++...+++ .|+|+|+. .. +|+++||.|+.++. .+... ++.++++
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~---~~~~ea~ 197 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT---TDLDVAF 197 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE---ECCHHHh
Confidence 345799999999999999999999866554 69999994 33 79999999997431 23332 2336899
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC--CcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEE
Q 025075 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLL 163 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p--~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kvi 163 (258)
+|||+||+++|.|+++|++|.|++..|++|++++++.|.+++| ++++|++|||+|+||++ +++.+ ++|++||+
T Consensus 198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i----~~k~apgiP~~rVi 273 (452)
T cd05295 198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSI----LIKYAPSIPRKNII 273 (452)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHH----HHHHcCCCCHHHEE
Confidence 9999999999999999999999999999999999999999999 89999999999966654 44454 89999999
Q ss_pred EEeeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCCC-------------C----CCHHH--HHHHH
Q 025075 164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TEYLT 223 (258)
Q Consensus 164 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~~-------------~----~~~~~--~~~i~ 223 (258)
|++.|||+|++++||+++|+++++|+ ++||||| |+++||+||++++.. + +.+++ .+++.
T Consensus 274 g~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeH-G~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~ 352 (452)
T cd05295 274 AVARLQENRAKALLARKLNVNSAGIKDVIVWGNI-GGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFV 352 (452)
T ss_pred EecchHHHHHHHHHHHHhCcCHHHceeeEEEEcc-CCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHH
Confidence 99878899999999999999999995 7999999 789999999997521 1 22323 46788
Q ss_pred HHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075 224 NRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV 257 (258)
Q Consensus 224 ~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~ 257 (258)
+.++++++ + +|++++||+|.|+++++++
T Consensus 353 ~~v~~rg~---~---rkgsT~~siA~A~~~iv~a 380 (452)
T cd05295 353 ATLKSLSS---S---LNHEAAISPAHAIATTLSY 380 (452)
T ss_pred HHHHHHHH---h---ccCChHHHHHHHHHHHHHH
Confidence 88999998 3 4689999999999999863
No 33
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=7.4e-43 Score=312.90 Aligned_cols=199 Identities=21% Similarity=0.267 Sum_probs=169.8
Q ss_pred EEEEEeCCC--C--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHH
Q 025075 48 VLHLYDVVN--T--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122 (258)
Q Consensus 48 ei~L~D~~~--~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~ 122 (258)
.|+|+|+++ . +|+++||.|+.++ ...... ++|++++++|||+||++||.|++||++|+|++..|+++++++++
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~ 94 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE 94 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 899999987 4 7899999999732 122222 45777899999999999999999999999999999999999999
Q ss_pred HhhhhCCC-cEEEEecCCCCCcHHHHHHHH-HHhCCCCCCcEEEE-eeccHHHHHHHHHHHhCCCCCceeE-EEEecCCC
Q 025075 123 GIAKCCPN-ATVNLISNPVNSTVPIAAEVF-KKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAG 198 (258)
Q Consensus 123 ~i~~~~p~-a~viv~tNPvd~~~~i~t~~~-~~~~~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g 198 (258)
+|++++|+ +++|++|||+|+|| +++ ++.+++|++ +||+ |.|||+||+++||++++++|++|+. +||||| |
T Consensus 95 ~i~~~a~~~~ivivvtNPvDv~t----~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeH-G 168 (313)
T TIGR01756 95 ALSEYAKPTVKVLVIGNPVNTNC----LVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNH-A 168 (313)
T ss_pred HHHhhCCCCeEEEEeCCchHHHH----HHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECC-C
Confidence 99999965 88999999999555 455 578889999 9999 8999999999999999999999975 599999 7
Q ss_pred CceeeccCCCCC--CC-C------CCHH-HHHHHHHHHHhhHHHHhhhhCCCCchHHHHH-HHHHHhHhc
Q 025075 199 VTILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMR-LNLRMHASV 257 (258)
Q Consensus 199 ~~~vp~~S~~~~--~~-~------~~~~-~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a-~a~~~~~~~ 257 (258)
+++||+||++++ .. + ++++ .+++|.++++++|++|+++| |+|+|+++ .++++++++
T Consensus 169 ~s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t~~~~~a~ai~~iv~a 235 (313)
T TIGR01756 169 ESMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMR---GFTSAASPVKASLQHMKA 235 (313)
T ss_pred CceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCc---CCcchHHHHHHHHHHHHH
Confidence 899999999976 21 1 2332 47899999999999999964 68999988 599998864
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.7e-40 Score=292.09 Aligned_cols=181 Identities=35% Similarity=0.529 Sum_probs=162.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCC--hhHHHHHhcCCCCC-eEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNT--PGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~--~~~ei~L~D~~~~--~g~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
|+||||+|.+|+++++.|+..+ ...+|+|+|++++ ++.++|+.|..... ..+ +..++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~-i~~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIK-VSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcE-EEECCchHHHhCCCCEEEECCC
Confidence 6899987999999999999988 7789999999885 67889998886432 223 2346788899999999999999
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHH
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 177 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~l 177 (258)
.++++|++|.+++.+|++++++++++++++||++|+|++|||+| ++++++++.+++|++|+||+|.+|++|+++++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d----~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCchhEEEeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 55666777778999999999669999999999
Q ss_pred HHHhCCCCCceeEEEEecCCCCceeeccCCCC
Q 025075 178 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK 209 (258)
Q Consensus 178 a~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~ 209 (258)
|+++++++++|+++|||+| |++++|+||+++
T Consensus 156 a~~l~v~~~~v~~~v~G~h-g~~~~~~~s~~~ 186 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEH-GGSQVPDWSTVR 186 (263)
T ss_pred HHHhCCCccceEEEEEEcC-CCceEeccccch
Confidence 9999999999999999999 678999999875
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=7.4e-35 Score=245.38 Aligned_cols=231 Identities=26% Similarity=0.385 Sum_probs=198.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCCC----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGM 89 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a 89 (258)
++.+|.|.||+|++|+++.+.++..-.++ .++|+|+.+. .|..++|+|+.++ .++.+..++|..++++|.
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~P-lL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALP-LLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhh-HHHhhhcccChhhhhccC
Confidence 45789999999999999999987633221 7899999774 6889999999876 344344577888999999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeec
Q 025075 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML 168 (258)
Q Consensus 90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~l 168 (258)
|+.|+..+.||++||+|.|++..|++|+++.+..+++|+ |++.++++.||+++++.++. +.+..+|.+++-.+|.|
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL 158 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL 158 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence 999999999999999999999999999999999999997 89999999999999997765 45567999999999999
Q ss_pred cHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCCC---------CCCHHHH--HHHHHHHHhhHHHHhhh
Q 025075 169 DVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVEA 236 (258)
Q Consensus 169 ds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~~---------~~~~~~~--~~i~~~v~~~~~~i~~~ 236 (258)
|++|+..+||.++|++..+|+ ..+||+| ..||+|+.-++++-. .+.+..| .++.+.|+++|..||+.
T Consensus 159 DhNRA~~QlA~klgv~~~~VkNviIWGNH-SsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a 237 (332)
T KOG1496|consen 159 DHNRALAQLALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA 237 (332)
T ss_pred chhhHHHHHHHhhCCchhhcceeEEeccc-ccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence 999999999999999999997 7899999 569999999998521 1333333 58999999999999998
Q ss_pred hCCCCchHHHHHHHHHHhHh
Q 025075 237 KAGAGSATLSMRLNLRMHAS 256 (258)
Q Consensus 237 k~g~~~~~~s~a~a~~~~~~ 256 (258)
+ |-|+.+|.|.++.+.++
T Consensus 238 r--k~SSA~SaA~aacDhi~ 255 (332)
T KOG1496|consen 238 R--KLSSAMSAAKAACDHIR 255 (332)
T ss_pred h--hhhhhhhHHHhHhhhhh
Confidence 6 57888999999988764
No 36
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=1.1e-34 Score=232.56 Aligned_cols=139 Identities=39% Similarity=0.613 Sum_probs=123.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
|||+||||+|.||+++++.|..+++++||+|+|+++. +|+++||+|..+...........+ +++++|||+||+++|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence 6999999889999999999999999999999999964 899999999975443332222333 5899999999999999
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG 164 (258)
|++||++|.|++..|++++++++++|.+++|+++++++|||+| ++++++++.+++||+|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd----~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD----VMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH----HHHHHHHHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH----HHHHHHHHhhCcCcccCcC
Confidence 9999999999999999999999999999999999999999999 6677788888899999998
No 37
>PRK15076 alpha-galactosidase; Provisional
Probab=99.93 E-value=4e-26 Score=213.20 Aligned_cols=163 Identities=21% Similarity=0.285 Sum_probs=129.1
Q ss_pred CCeEEEEcCCCchHHHHHH--HHH-hCCCCc-EEEEEeCCCCh---hHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAM--LMK-INPLVS-VLHLYDVVNTP---GVTADISHMD--TGAVVRGFLGQPQLENALTGMD 90 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~--~L~-~~~~~~-ei~L~D~~~~~---g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aD 90 (258)
|+||+|||| |++|.+.++ .++ ..++.+ ||+|+|+++++ +..+ +.+.. .....+. ..++|++++++|||
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i-~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKI-TATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEE-EEECCHHHHhCCCC
Confidence 479999998 999988877 554 345554 99999998852 2222 33221 1122332 34678889999999
Q ss_pred EEEEcCCCC-CCCC--------------CchhhH--------HHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHH
Q 025075 91 LVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA 147 (258)
Q Consensus 91 iVIi~ag~~-~~~g--------------~~r~d~--------~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~ 147 (258)
+||++++++ .+++ ++|.|. +.+|+++++++++.|+++||+||+|++|||+| ++
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d----iv 153 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA----MN 153 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH----HH
Confidence 999999987 4445 567787 89999999999999999999999999999999 67
Q ss_pred HHHHHHhCCCCCCcEEEEe--eccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075 148 AEVFKKAGTYDPKKLLGVT--MLDVVRANTFVAEVLGLDPRDVDVPVVGG 195 (258)
Q Consensus 148 t~~~~~~~~~~~~kviG~t--~lds~R~~~~la~~l~v~~~~v~~~v~G~ 195 (258)
|++++ ++|+.||||+| .+|+. +.+|+.+|+++++|++++.|=
T Consensus 154 t~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~Gl 197 (431)
T PRK15076 154 TWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGI 197 (431)
T ss_pred HHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEee
Confidence 77776 47889999997 56664 789999999999999999993
No 38
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.93 E-value=2.6e-25 Score=207.19 Aligned_cols=173 Identities=26% Similarity=0.310 Sum_probs=130.2
Q ss_pred CeEEEEcCCCchHHH--HHHHHHhCC--C-CcEEEEEeCCCChh-----HHHHHhcCCCCCeEEEEeCCCchHhhhCCCC
Q 025075 21 FKVAILGAAGGIGQP--LAMLMKINP--L-VSVLHLYDVVNTPG-----VTADISHMDTGAVVRGFLGQPQLENALTGMD 90 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~--~a~~L~~~~--~-~~ei~L~D~~~~~g-----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD 90 (258)
|||+|||| |+. .+ +...|+... + .+||+|+|+|+++- .+..+.+.. ...++. ..|+|+++|++|||
T Consensus 1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v-~~ttD~~~Al~gAD 76 (425)
T cd05197 1 VKIAIIGG-GSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKF-EKTMDLEDAIIDAD 76 (425)
T ss_pred CEEEEECC-chH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEE-EEeCCHHHHhCCCC
Confidence 69999999 664 22 223344332 3 37999999998521 111222221 123443 34789999999999
Q ss_pred EEEEcCCC------------CCCCCC--------chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075 91 LVIIPAGV------------PRKPGM--------TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 150 (258)
Q Consensus 91 iVIi~ag~------------~~~~g~--------~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~ 150 (258)
+||.+..+ |.+.|. -......+|+++++++++.|+++||+||+|++|||+| ++|++
T Consensus 77 fVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~d----i~t~a 152 (425)
T cd05197 77 FVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAG----EVTEA 152 (425)
T ss_pred EEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHH----HHHHH
Confidence 99998643 223331 1233567899999999999999999999999999999 67777
Q ss_pred HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe-cCCCCceeeccCCCC
Q 025075 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVK 209 (258)
Q Consensus 151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~h~g~~~vp~~S~~~ 209 (258)
+++. +|+.|+||+|.. +.|+++.+|+.+|+++++|+++|+| +| + |+||+++
T Consensus 153 ~~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnH-g----~~~s~~~ 204 (425)
T cd05197 153 VRRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNH-G----IWLNRVR 204 (425)
T ss_pred HHHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccC-e----EeeEeEE
Confidence 7776 478999999877 8999999999999999999999999 99 4 8888876
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.93 E-value=4.4e-25 Score=205.28 Aligned_cols=165 Identities=22% Similarity=0.305 Sum_probs=127.1
Q ss_pred CeEEEEcCCCchHHHH-HHHHHhC-C-C-CcEEEEEeCC-CChh-----HHHHHhcCCCCCeEEEEeCCCchHhhhCCCC
Q 025075 21 FKVAILGAAGGIGQPL-AMLMKIN-P-L-VSVLHLYDVV-NTPG-----VTADISHMDTGAVVRGFLGQPQLENALTGMD 90 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~-a~~L~~~-~-~-~~ei~L~D~~-~~~g-----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD 90 (258)
|||+|||| |++-... ...|+.. . + .+||+|+|+| +++- .+..+.... ...++. ..|+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v-~~t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKV-HLTTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEE-EEeCCHHHHhCCCC
Confidence 69999999 7763322 2334432 2 2 4799999999 5421 111122221 113333 34689999999999
Q ss_pred EEEEcCCCCCCCCCchhh--------------------HHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075 91 LVIIPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 150 (258)
Q Consensus 91 iVIi~ag~~~~~g~~r~d--------------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~ 150 (258)
+||+++++++.+++++.+ ...+|+++++++++.|+++||+||+|++|||+| ++|++
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a 153 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA 153 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence 999999887776665554 267899999999999999999999999999999 77778
Q ss_pred HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe-cC
Q 025075 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GH 196 (258)
Q Consensus 151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~h 196 (258)
+++.+ +.|+||+|..+ .|+++.+|+.+|+++++++++|+| +|
T Consensus 154 ~~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH 196 (419)
T cd05296 154 VLRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNH 196 (419)
T ss_pred HHHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEeccc
Confidence 87764 78999999774 899999999999999999999999 88
No 40
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.88 E-value=3e-22 Score=187.15 Aligned_cols=165 Identities=22% Similarity=0.224 Sum_probs=127.9
Q ss_pred CeEEEEcCCCchHHHHHH--HHHhC-CCC-cEEEEEeCCCC--hhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCCEE
Q 025075 21 FKVAILGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVNT--PGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV 92 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~--~L~~~-~~~-~ei~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiV 92 (258)
+||+|||| |.+|++.+. .++.. .+. .+|+|||++++ +....++.+.. .....+. ..++|++++++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I-~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKI-EATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEE-EEeCCHHHHhcCCCEE
Confidence 58999998 999999776 34422 333 39999999985 22233333221 1112232 2467888999999999
Q ss_pred EEcCCCCCCCCCch----------------------hhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075 93 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 150 (258)
Q Consensus 93 Ii~ag~~~~~g~~r----------------------~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~ 150 (258)
|++++.+..++.++ .....+|.+++.++++.++++||++|++++|||++ ++|++
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~----i~t~~ 154 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMA----ELTWA 154 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHH----HHHHH
Confidence 99998665555444 44567899999999999999999999999999999 77777
Q ss_pred HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195 (258)
Q Consensus 151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~ 195 (258)
+++.++ .|++|+|.. +.++++.+|+.+++++++|+++++|-
T Consensus 155 ~~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~Gl 195 (423)
T cd05297 155 LNRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGI 195 (423)
T ss_pred HHHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEee
Confidence 877653 799999865 78999999999999999999999993
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.86 E-value=1.1e-20 Score=176.66 Aligned_cols=164 Identities=23% Similarity=0.307 Sum_probs=121.3
Q ss_pred CeEEEEcCCCchHHH--HHHHHHhC--CC-CcEEEEEeCCCCh-h----HHHHHhcCCCCCeEEEEeCCCchHhhhCCCC
Q 025075 21 FKVAILGAAGGIGQP--LAMLMKIN--PL-VSVLHLYDVVNTP-G----VTADISHMDTGAVVRGFLGQPQLENALTGMD 90 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~--~a~~L~~~--~~-~~ei~L~D~~~~~-g----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD 90 (258)
|||+|||| |++ .+ +...|... .+ .++|+|+|+|+++ . .+..+.+.. ...++. ..|+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v-~~Ttdr~eAl~gAD 76 (437)
T cd05298 1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKF-VYTTDPEEAFTDAD 76 (437)
T ss_pred CeEEEECC-cHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEE-EEECCHHHHhCCCC
Confidence 69999999 665 22 22334433 23 3799999999852 1 112222221 123443 34789999999999
Q ss_pred EEEEcCCC------------CCCCCC---c-----hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075 91 LVIIPAGV------------PRKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 150 (258)
Q Consensus 91 iVIi~ag~------------~~~~g~---~-----r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~ 150 (258)
+||.+..+ |.+.|. + ..-...+|+++++++++.|+++||+||+|++|||+| ++|++
T Consensus 77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~----~vt~~ 152 (437)
T cd05298 77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA----IVAEA 152 (437)
T ss_pred EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHH
Confidence 99998643 223332 1 233568999999999999999999999999999999 67777
Q ss_pred HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195 (258)
Q Consensus 151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~ 195 (258)
+++. +|+.|+||+|+-.. .++..+|+.+|++++++...+.|=
T Consensus 153 ~~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~Gl 194 (437)
T cd05298 153 LRRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGL 194 (437)
T ss_pred HHHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEee
Confidence 7765 78899999997664 478899999999999999999993
No 42
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.84 E-value=4.5e-20 Score=152.95 Aligned_cols=152 Identities=24% Similarity=0.295 Sum_probs=104.7
Q ss_pred eEEEEcCCCchHHHHHH--HHHhCC-C-CcEEEEEeCCCCh-----hHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEE
Q 025075 22 KVAILGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVNTP-----GVTADISHMDTGAVVRGFLGQPQLENALTGMDLV 92 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~--~L~~~~-~-~~ei~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV 92 (258)
||+|||| |++-.+... .+...+ + .+||+|+|+|+++ ..+..+.... ...++. ..++|+++|++|||+|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v-~~ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKV-EATTDRREALEGADFV 77 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEE-EEESSHHHHHTTESEE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEE-EEeCCHHHHhCCCCEE
Confidence 8999998 887777533 333322 2 2599999999852 1111122111 123332 3468999999999999
Q ss_pred EEcCCC------------CCCCCCc----------hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075 93 IIPAGV------------PRKPGMT----------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 150 (258)
Q Consensus 93 Ii~ag~------------~~~~g~~----------r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~ 150 (258)
|++..+ |.+.|.. -.-...++++.+.++++.|+++|||||++|+|||+. +++++
T Consensus 78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a 153 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEA 153 (183)
T ss_dssp EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHH
T ss_pred EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHH
Confidence 998643 4555432 233568999999999999999999999999999999 77888
Q ss_pred HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCC
Q 025075 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL 183 (258)
Q Consensus 151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v 183 (258)
+.+. +|..|++|+|+-. .-+...+|+.||.
T Consensus 154 ~~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 154 LSRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp HHHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred HHHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence 8775 5668999999765 3578889998873
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.83 E-value=1.4e-19 Score=166.61 Aligned_cols=168 Identities=28% Similarity=0.360 Sum_probs=123.2
Q ss_pred CCCCeEEEEcCCCchHHHHHH--HHHhCC-C-CcEEEEEeCCCChhH-HHH----HhcCCCCCeEEEEeCCCchHhhhCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVNTPGV-TAD----ISHMDTGAVVRGFLGQPQLENALTG 88 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~--~L~~~~-~-~~ei~L~D~~~~~g~-~~d----l~~~~~~~~v~~~~~~~d~~~a~~~ 88 (258)
++++||+|||| |+++.+... .|...+ + ..||.|+|+++.+.+ ... +.+... ..++. ..++|+++|++|
T Consensus 1 m~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g-~~~kv-~~ttd~~eAl~g 77 (442)
T COG1486 1 MKKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAG-APVKV-EATTDRREALEG 77 (442)
T ss_pred CCcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhC-CCeEE-EEecCHHHHhcC
Confidence 35679999999 888877532 233322 2 369999999985221 111 222211 23443 346799999999
Q ss_pred CCEEEEcCCC------------CCCCCCch--------hhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHH
Q 025075 89 MDLVIIPAGV------------PRKPGMTR--------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 148 (258)
Q Consensus 89 aDiVIi~ag~------------~~~~g~~r--------~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t 148 (258)
||+|+.++.+ |.|.|--+ .-...++++++.+|++.|+++||+||++++|||+. ++|
T Consensus 78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vT 153 (442)
T COG1486 78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVT 153 (442)
T ss_pred CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHH
Confidence 9999998632 44444222 22347899999999999999999999999999999 888
Q ss_pred HHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCC-CceeEEEEec
Q 025075 149 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGG 195 (258)
Q Consensus 149 ~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G~ 195 (258)
++.++. +|.-|++|+|+..- -....+|+.|++++ ++++..+.|-
T Consensus 154 eAv~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGl 198 (442)
T COG1486 154 EAVRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGL 198 (442)
T ss_pred HHHHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeec
Confidence 888886 56459999997643 46789999999975 9999999993
No 44
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.82 E-value=2.1e-20 Score=154.89 Aligned_cols=89 Identities=36% Similarity=0.530 Sum_probs=80.9
Q ss_pred eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC-----------CCCCHHHHHHHHHHHHhhHHHHh
Q 025075 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-----------CSFTQEETEYLTNRIQNGGTEVV 234 (258)
Q Consensus 166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~-----------~~~~~~~~~~i~~~v~~~~~~i~ 234 (258)
|.|||+|++++||+++|++|++++++||||| |+++||+||++++. ..++++++++|.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeH-g~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEH-GDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSS-STTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecC-CcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 5799999999999999999999999999999 78999999999832 24677789999999999999999
Q ss_pred hhhCCCCchHHHHHHHHHHhHhc
Q 025075 235 EAKAGAGSATLSMRLNLRMHASV 257 (258)
Q Consensus 235 ~~k~g~~~~~~s~a~a~~~~~~~ 257 (258)
++|+ |+++||+|.|+++++++
T Consensus 80 ~~k~--g~t~~s~A~a~~~~v~a 100 (174)
T PF02866_consen 80 KAKG--GSTSYSIAAAAARIVEA 100 (174)
T ss_dssp HHHS--SSCHHHHHHHHHHHHHH
T ss_pred eecc--ccCcCCHHHHHHHHHHH
Confidence 9983 88999999999999864
No 45
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.04 E-value=7.1e-10 Score=92.35 Aligned_cols=117 Identities=24% Similarity=0.354 Sum_probs=78.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---h--hHHHH-Hh---c-CCC--------CCeEEEEeCCCchH
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---P--GVTAD-IS---H-MDT--------GAVVRGFLGQPQLE 83 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~--g~~~d-l~---~-~~~--------~~~v~~~~~~~d~~ 83 (258)
||+|||| |.+|..++..++..|+ +|.|||.+++ . ....+ +. . ... ...+. .++|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~---~~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS---FTTDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE---EESSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc---cccCHH
Confidence 7999998 9999999999999998 9999999874 1 11111 11 1 110 11333 346776
Q ss_pred hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075 84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 162 (258)
Q Consensus 84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv 162 (258)
++. +||+||-+. .+++++.+++...+++++ |++++ .||.+.. -++++..... .|+|+
T Consensus 75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl---~i~~la~~~~--~p~R~ 132 (180)
T PF02737_consen 75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSL---SISELAAALS--RPERF 132 (180)
T ss_dssp GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS----HHHHHTTSS--TGGGE
T ss_pred HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCC---CHHHHHhccC--cCceE
Confidence 655 999999986 345888999999999998 56665 8887764 4555555443 57789
Q ss_pred EEEe
Q 025075 163 LGVT 166 (258)
Q Consensus 163 iG~t 166 (258)
+|+-
T Consensus 133 ig~H 136 (180)
T PF02737_consen 133 IGMH 136 (180)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9984
No 46
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.02 E-value=1e-09 Score=98.16 Aligned_cols=141 Identities=21% Similarity=0.289 Sum_probs=99.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhH--HH----HHhcCC------CCCeEEEEeCCCchHh
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TA----DISHMD------TGAVVRGFLGQPQLEN 84 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~--~~----dl~~~~------~~~~v~~~~~~~d~~~ 84 (258)
.+||+|||| |.+|+.+|+.++..|+ +|+|+|++++ ++. .. .+.... ....+..+..++|+ .
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~ 78 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A 78 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence 469999998 9999999999998777 9999999864 111 11 111110 01122223345565 4
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL 163 (258)
Q Consensus 85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi 163 (258)
++++||+||-++ .+|.++.+++..++.+++ |++++ .||.+.. .++++.... ..|+|++
T Consensus 79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl---~it~ia~~~--~rper~i 137 (307)
T COG1250 79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSL---SITELAEAL--KRPERFI 137 (307)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCC---CHHHHHHHh--CCchhEE
Confidence 899999999986 567889999999999998 67776 9999876 455555544 4578899
Q ss_pred EE-------------------eeccHHHHHHHHHHHhCCCC
Q 025075 164 GV-------------------TMLDVVRANTFVAEVLGLDP 185 (258)
Q Consensus 164 G~-------------------t~lds~R~~~~la~~l~v~~ 185 (258)
|+ |.-++...-..++++++..|
T Consensus 138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 97 23356666677888888555
No 47
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=3.1e-08 Score=90.49 Aligned_cols=115 Identities=16% Similarity=0.220 Sum_probs=83.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH-------------HHhcCC-CCCeEEEEeCCCchHhhh
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-------------DISHMD-TGAVVRGFLGQPQLENAL 86 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~-------------dl~~~~-~~~~v~~~~~~~d~~~a~ 86 (258)
|||+|+|. |+||...+..|++.|+ +|+++|+++.+-..+ +|.... ...++ ..|+|+++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl---~fTtd~~~a~ 74 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRL---RFTTDYEEAV 74 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcE---EEEcCHHHHH
Confidence 79999996 9999999999999998 999999997521111 111111 11123 3578999999
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE--ecCCCCCcHHHH
Q 025075 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL--ISNPVNSTVPIA 147 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv--~tNPvd~~~~i~ 147 (258)
+++|++||+.|.|.++.. ..++..+...++.|.++.+...+++ .|=|+.+.-.+-
T Consensus 75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~ 131 (414)
T COG1004 75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR 131 (414)
T ss_pred hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence 999999999999987632 2347778888999988877634333 377888655443
No 48
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.96 E-value=8.8e-09 Score=93.14 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-H-------HHH-HhcCC-----CCCeEEEEeCCCchHh
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-V-------TAD-ISHMD-----TGAVVRGFLGQPQLEN 84 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~-------~~d-l~~~~-----~~~~v~~~~~~~d~~~ 84 (258)
...||+|||+ |.+|+.++..++..|+ +|++||++++.. . .++ +.... ....+. .++++++
T Consensus 6 ~i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~---~~~~l~~ 79 (321)
T PRK07066 6 DIKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLR---FVATIEA 79 (321)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhce---ecCCHHH
Confidence 3468999998 9999999999999998 999999986411 0 111 11010 011222 3457888
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164 (258)
Q Consensus 85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG 164 (258)
++++||+||.++ .+|.++.+++...+.+++|... |+.||.+.. .++++.... -.|+|++|
T Consensus 80 av~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l---~~s~la~~~--~~p~R~~g 139 (321)
T PRK07066 80 CVADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGL---LPTDFYARA--THPERCVV 139 (321)
T ss_pred HhcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc---CHHHHHHhc--CCcccEEE
Confidence 999999999986 3457778888899999986543 458888864 334444443 34578888
Q ss_pred E
Q 025075 165 V 165 (258)
Q Consensus 165 ~ 165 (258)
+
T Consensus 140 ~ 140 (321)
T PRK07066 140 G 140 (321)
T ss_pred E
Confidence 5
No 49
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.90 E-value=7.7e-09 Score=102.79 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=86.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhH--HHHH-----hcCCC-----CCeEEEEeCCCc
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TADI-----SHMDT-----GAVVRGFLGQPQ 81 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~--~~dl-----~~~~~-----~~~v~~~~~~~d 81 (258)
+.+..||+|||| |.+|..+|..++..|+ +|+|+|++++ ++. ..+. ..... ......+..++|
T Consensus 310 ~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 386 (714)
T TIGR02437 310 AKDVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLS 386 (714)
T ss_pred ccccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence 334568999998 9999999999999998 9999999874 111 1111 11100 001111223456
Q ss_pred hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK 160 (258)
Q Consensus 82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~ 160 (258)
+ +++++||+||-++ .+++++.+++..++++++| ++++ .||.+.. -++++.... -.|+
T Consensus 387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l---~i~~ia~~~--~~p~ 444 (714)
T TIGR02437 387 Y-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTI---SISLLAKAL--KRPE 444 (714)
T ss_pred H-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHhhc--CCcc
Confidence 6 6799999999986 3568889999999999985 5655 8998875 345555444 3478
Q ss_pred cEEEE
Q 025075 161 KLLGV 165 (258)
Q Consensus 161 kviG~ 165 (258)
|++|+
T Consensus 445 r~ig~ 449 (714)
T TIGR02437 445 NFCGM 449 (714)
T ss_pred cEEEE
Confidence 89997
No 50
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.87 E-value=1.2e-08 Score=101.63 Aligned_cols=121 Identities=15% Similarity=0.186 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhH--H---HH-H-hcCCC-----CCeEEEEeCCCchHh
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--T---AD-I-SHMDT-----GAVVRGFLGQPQLEN 84 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~--~---~d-l-~~~~~-----~~~v~~~~~~~d~~~ 84 (258)
..||+|||| |.+|..++..++..|+ +|+|+|++++ ++. . ++ + ..... ...+..+..++|+ +
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 388 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-A 388 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-H
Confidence 358999998 9999999999999998 9999999874 111 1 11 1 11110 0011112234676 6
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL 163 (258)
Q Consensus 85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi 163 (258)
++++||+||-++ .+++++.+++..++++++| ++++ .||.+.. -++++..... .|+|++
T Consensus 389 ~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p~r~~ 447 (715)
T PRK11730 389 GFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTI---SISLLAKALK--RPENFC 447 (715)
T ss_pred HhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--CCccEE
Confidence 799999999986 3568889999999999985 5544 8998875 3455555443 467899
Q ss_pred EE
Q 025075 164 GV 165 (258)
Q Consensus 164 G~ 165 (258)
|+
T Consensus 448 g~ 449 (715)
T PRK11730 448 GM 449 (715)
T ss_pred EE
Confidence 96
No 51
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.87 E-value=2.2e-08 Score=89.26 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=79.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-H-------HHH-HhcCC-C-----CCeEEEEeCCCchHh
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-V-------TAD-ISHMD-T-----GAVVRGFLGQPQLEN 84 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~-------~~d-l~~~~-~-----~~~v~~~~~~~d~~~ 84 (258)
+.||+|||+ |.+|..+|..++..|+ +|++||++++.. . .++ +.+.. . ...+..+..++|+ +
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~ 80 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-G 80 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-H
Confidence 358999998 9999999999999998 999999987511 1 111 11110 0 0011112234677 6
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-C-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 162 (258)
Q Consensus 85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv 162 (258)
++++||+||.++ .++.++.+++...+++++ + ++++ +||.+... ++.... .. ..|+|+
T Consensus 81 ~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~---~~~la~-~~-~~~~r~ 139 (286)
T PRK07819 81 DFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIP---IMKLAA-AT-KRPGRV 139 (286)
T ss_pred HhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHh-hc-CCCccE
Confidence 799999999986 345777888889999996 4 5555 77776642 222222 22 335677
Q ss_pred EEE
Q 025075 163 LGV 165 (258)
Q Consensus 163 iG~ 165 (258)
+|+
T Consensus 140 ~g~ 142 (286)
T PRK07819 140 LGL 142 (286)
T ss_pred EEE
Confidence 776
No 52
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.86 E-value=1.4e-08 Score=90.41 Aligned_cols=119 Identities=22% Similarity=0.347 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHH-----HHHh--cCCC---------CCeEEEEeCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVT-----ADIS--HMDT---------GAVVRGFLGQP 80 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~-----~dl~--~~~~---------~~~v~~~~~~~ 80 (258)
.+||+|||+ |.+|..++..++..|+ +|.+||++++. ... .+.. .... ...+. .++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT---LTT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE---EeC
Confidence 468999998 9999999999999887 89999998641 110 0100 0000 01222 346
Q ss_pred chHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075 81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP 159 (258)
Q Consensus 81 d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~ 159 (258)
|+++++++||+||++.. .+.+..+++.+.+.++++ ++++ ++|.+.. .++++..... .+
T Consensus 77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~---~~~~~~~~~~--~~ 135 (287)
T PRK08293 77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTL---LPSQFAEATG--RP 135 (287)
T ss_pred CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccC---CHHHHHhhcC--Cc
Confidence 78788999999999962 235566777788888775 4543 5676653 2334444332 35
Q ss_pred CcEEEE
Q 025075 160 KKLLGV 165 (258)
Q Consensus 160 ~kviG~ 165 (258)
.|++|+
T Consensus 136 ~r~vg~ 141 (287)
T PRK08293 136 EKFLAL 141 (287)
T ss_pred ccEEEE
Confidence 677775
No 53
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.85 E-value=9.2e-09 Score=102.54 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hh--HHHHHh-----cCCC-----CCeEEEEeCCCch
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTADIS-----HMDT-----GAVVRGFLGQPQL 82 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g--~~~dl~-----~~~~-----~~~v~~~~~~~d~ 82 (258)
.+..||+|||| |.+|+.++..++..|+ +|+|+|++++ ++ ...+.. .... ......+..++|+
T Consensus 333 ~~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 333 RPVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CcccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 34468999998 9999999999999998 9999999874 11 111111 1100 0011112334676
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (258)
Q Consensus 83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k 161 (258)
+++++||+||-++ .+|.++.+++..++++++| ++++ .||.+.. -++++..... .|+|
T Consensus 410 -~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p~r 467 (737)
T TIGR02441 410 -SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSAL---PIKDIAAVSS--RPEK 467 (737)
T ss_pred -HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--Cccc
Confidence 5799999999986 4578889999999999985 5555 8998875 3455555443 4688
Q ss_pred EEEE
Q 025075 162 LLGV 165 (258)
Q Consensus 162 viG~ 165 (258)
++|+
T Consensus 468 ~ig~ 471 (737)
T TIGR02441 468 VIGM 471 (737)
T ss_pred eEEE
Confidence 9996
No 54
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.80 E-value=1.3e-08 Score=85.21 Aligned_cols=122 Identities=20% Similarity=0.302 Sum_probs=72.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC----------------CCCeEEEEeCCCchHh
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN 84 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~~~d~~~ 84 (258)
|||+|||. |+||..+|..|+..|+ +|+.+|+|+++- ..++... ...++. .++|.++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v--~~l~~g~~p~~E~~l~~ll~~~~~~~~l~---~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKV--EALNNGELPIYEPGLDELLKENVSAGRLR---ATTDIEE 72 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHH--HHHHTTSSSS-CTTHHHHHHHHHHTTSEE---EESEHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHH--HHHhhccccccccchhhhhccccccccch---hhhhhhh
Confidence 79999997 9999999999999998 999999987421 1122111 012343 2467888
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEE-ecCCCCCcHHHHHHHHHHhCC
Q 025075 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNL-ISNPVNSTVPIAAEVFKKAGT 156 (258)
Q Consensus 85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv-~tNPvd~~~~i~t~~~~~~~~ 156 (258)
++++||++|+|.+.|..++.+ -+...+.+.++.|.++. ++.++++ -|=|+.+.-.++..++.+.++
T Consensus 73 ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~ 140 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSG 140 (185)
T ss_dssp HHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCC
T ss_pred hhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcc
Confidence 899999999999888765321 12444566667776664 4444444 356777555455556666553
No 55
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.80 E-value=3.5e-08 Score=97.98 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCC---hh--HHHH-Hh----cCCC-C----CeEEEEeCCCch
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT---PG--VTAD-IS----HMDT-G----AVVRGFLGQPQL 82 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~---~g--~~~d-l~----~~~~-~----~~v~~~~~~~d~ 82 (258)
+..||+|||| |.+|+.++..++ ..|+ +|+|+|++++ ++ ...+ +. .... . .....+..++|+
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 379 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY 379 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh
Confidence 4468999998 999999999888 4788 9999999874 11 1111 11 1100 0 001112335676
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (258)
Q Consensus 83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k 161 (258)
++++|||+||-++ .+++++.+++..++++++| ++++ .||.+.. .++++.... -.|+|
T Consensus 380 -~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l---~i~~la~~~--~~p~r 437 (699)
T TIGR02440 380 -RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSL---PIGQIAAAA--SRPEN 437 (699)
T ss_pred -HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCC---CHHHHHHhc--CCccc
Confidence 5899999999986 3468889999999999985 5554 8998875 344555443 35678
Q ss_pred EEEE
Q 025075 162 LLGV 165 (258)
Q Consensus 162 viG~ 165 (258)
++|+
T Consensus 438 ~~g~ 441 (699)
T TIGR02440 438 VIGL 441 (699)
T ss_pred EEEE
Confidence 9986
No 56
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.78 E-value=3.2e-08 Score=98.41 Aligned_cols=122 Identities=17% Similarity=0.268 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCC---hh--HHHHHh-----cCCC-----CCeEEEEeCCCch
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT---PG--VTADIS-----HMDT-----GAVVRGFLGQPQL 82 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~---~g--~~~dl~-----~~~~-----~~~v~~~~~~~d~ 82 (258)
...||+|||| |.+|..+|..++ ..|+ +|+|+|.+++ ++ ...+.. .... ......+..++|+
T Consensus 308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 384 (708)
T PRK11154 308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY 384 (708)
T ss_pred cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh
Confidence 3468999998 999999999988 7788 9999999864 11 111111 1100 0011122335676
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (258)
Q Consensus 83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k 161 (258)
+++++||+||-++ .+|.++.+++...+++++ |++++ .||.+.. .++++.... -.|+|
T Consensus 385 -~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l---~i~~la~~~--~~p~r 442 (708)
T PRK11154 385 -RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSL---PIGQIAAAA--ARPEQ 442 (708)
T ss_pred -HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHHhc--Ccccc
Confidence 6899999999986 457889999999999998 56655 8998875 345555444 24678
Q ss_pred EEEE
Q 025075 162 LLGV 165 (258)
Q Consensus 162 viG~ 165 (258)
++|+
T Consensus 443 ~ig~ 446 (708)
T PRK11154 443 VIGL 446 (708)
T ss_pred eEEE
Confidence 9887
No 57
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.73 E-value=5.7e-08 Score=86.25 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=75.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--------H-HHHhcCC-C--------CCeEEEEeCCCc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--------T-ADISHMD-T--------GAVVRGFLGQPQ 81 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--------~-~dl~~~~-~--------~~~v~~~~~~~d 81 (258)
+.||+|||+ |.+|..++..++..|+ +|+++|++++... . .++.... . ...+. .++|
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~---~~~~ 76 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT---GTTD 76 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeCC
Confidence 458999998 9999999999999987 8999999875211 0 0111110 0 01222 2456
Q ss_pred hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK 160 (258)
Q Consensus 82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~ 160 (258)
+ +++++||+||+++ ..+..+.+++.+.+.++++ ++++ +||-.... ++++....+ .+.
T Consensus 77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~---~~~la~~~~--~~~ 134 (282)
T PRK05808 77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLS---ITELAAATK--RPD 134 (282)
T ss_pred H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHHhhC--CCc
Confidence 5 4689999999996 2235556788888888875 5555 66666542 233333332 345
Q ss_pred cEEEE
Q 025075 161 KLLGV 165 (258)
Q Consensus 161 kviG~ 165 (258)
|++|+
T Consensus 135 r~ig~ 139 (282)
T PRK05808 135 KVIGM 139 (282)
T ss_pred ceEEe
Confidence 78886
No 58
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.68 E-value=2.1e-08 Score=85.09 Aligned_cols=123 Identities=20% Similarity=0.300 Sum_probs=85.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------hhHHHHHhcCC------CCC--------eEEEEeCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVTADISHMD------TGA--------VVRGFLGQ 79 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~------~g~~~dl~~~~------~~~--------~v~~~~~~ 79 (258)
+..|+|||| |.+|+.+|+..+..|+ .|.|+|.++. ++...-+.+.. -+. .+..+..+
T Consensus 11 ~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 11 IKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred ccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 357999998 9999999999999999 9999999873 12111111110 000 00111124
Q ss_pred CchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075 80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 159 (258)
Q Consensus 80 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~ 159 (258)
+|..++++|||+||.++ .+|+++.+++.+.+++.|+...++ .||.+.. .++.+..-. -+|
T Consensus 88 tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~~il-~tNTSSl---~lt~ia~~~--~~~ 147 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSSTIL-ATNTSSL---SLTDIASAT--QRP 147 (298)
T ss_pred CCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccceEE-eecccce---eHHHHHhhc--cCh
Confidence 67888999999987764 789999999999999999764433 8998875 344444333 457
Q ss_pred CcEEEE
Q 025075 160 KKLLGV 165 (258)
Q Consensus 160 ~kviG~ 165 (258)
.|+.|+
T Consensus 148 srf~Gl 153 (298)
T KOG2304|consen 148 SRFAGL 153 (298)
T ss_pred hhhcee
Confidence 788887
No 59
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.66 E-value=3.1e-07 Score=87.28 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=78.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHH-----HhcCCC-----CCeEEEEeCCCchHhhhCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-----ISHMDT-----GAVVRGFLGQPQLENALTGM 89 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~d-----l~~~~~-----~~~v~~~~~~~d~~~a~~~a 89 (258)
+|||+|||+ |.||..++..|+..|.--+|+.+|+++++-..+. +.+... ...-+....++|+++++++|
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 589999998 9999999999998864338999999875211110 101000 00001122356777889999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE--ecCCCCCcHHH
Q 025075 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL--ISNPVNSTVPI 146 (258)
Q Consensus 90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv--~tNPvd~~~~i 146 (258)
|++|+|.+.|...+....+ -.-++..+.+.++.|.++.+++.+|+ .|-|..+.-.+
T Consensus 80 dvi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~ 137 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (473)
T ss_pred CEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence 9999999988753210000 01235567788888888765554444 37788854433
No 60
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.66 E-value=4.9e-07 Score=77.44 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=62.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|||+|||++|.+|++++..|...|+ +|.++|+++++.. ..+..+... ........ ++..++++++|+||++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~--~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG--ADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE--eChHHHHhcCCEEEEEC
Confidence 6899998449999999999998886 9999998765321 112211110 00111111 23367899999999996
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
. + ..+.++++.+...-++.++|-++||.+
T Consensus 77 p----~------------~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 77 P----W------------DHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred C----H------------HHHHHHHHHHHHhccCCEEEEeccCce
Confidence 2 1 112333444443333467888999987
No 61
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.66 E-value=2.3e-07 Score=82.78 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=74.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHH--------Hh---cCC-C--------CCeEEEEeC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTAD--------IS---HMD-T--------GAVVRGFLG 78 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~d--------l~---~~~-~--------~~~v~~~~~ 78 (258)
..||+|||+ |.+|..++..|+..|+ +|+++|++++.- ...+ +. +.. . ...+. .
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~---~ 76 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR---T 76 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE---e
Confidence 358999998 9999999999999998 899999987421 1111 11 000 0 01122 2
Q ss_pred CCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075 79 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTY 157 (258)
Q Consensus 79 ~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~ 157 (258)
++++ +++++||+||.+.. .+.++.+++.+.+.++++ ++++ +||.... .++++.... -
T Consensus 77 ~~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~---~~~~la~~~--~ 134 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETII--ASNTSGI---MIAEIATAL--E 134 (291)
T ss_pred eCCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EEcCCCC---CHHHHHhhc--C
Confidence 3455 67899999999962 124456777778888765 5554 4665543 223444333 2
Q ss_pred CCCcEEEE
Q 025075 158 DPKKLLGV 165 (258)
Q Consensus 158 ~~~kviG~ 165 (258)
.+.|++|+
T Consensus 135 ~~~r~ig~ 142 (291)
T PRK06035 135 RKDRFIGM 142 (291)
T ss_pred CcccEEEE
Confidence 35678886
No 62
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.64 E-value=1.2e-07 Score=77.02 Aligned_cols=94 Identities=22% Similarity=0.294 Sum_probs=64.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC---C-----CCeEEEEeCCCchHhhhCCCCEEE
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---T-----GAVVRGFLGQPQLENALTGMDLVI 93 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~---~-----~~~v~~~~~~~d~~~a~~~aDiVI 93 (258)
||+|+|| |..|.++|..|..+|+ +|.||+++++....+.-.+.. . +..+. .++|+++++++||+||
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~---~t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK---ATTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE---EESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc---cccCHHHHhCcccEEE
Confidence 7999998 9999999999999996 999999986432222222321 1 12233 3578999999999999
Q ss_pred EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEec
Q 025075 94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS 137 (258)
Q Consensus 94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~t 137 (258)
++.- ....+++++.+..+-+ +..+++++
T Consensus 75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred eccc----------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 9851 1224778888888764 45565554
No 63
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.60 E-value=8.5e-07 Score=79.72 Aligned_cols=118 Identities=17% Similarity=0.256 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC--------CCCeEEEEeCCCchHhhhCCCCE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------TGAVVRGFLGQPQLENALTGMDL 91 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~--------~~~~v~~~~~~~d~~~a~~~aDi 91 (258)
++||+|+|+ |..|.++|..|+..++ +|.||.++++....+.-.|.. .+..+ ..++|+.+++++||+
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l---~at~Dl~~a~~~ad~ 74 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEEIVAEINETRENPKYLPGILLPPNL---KATTDLAEALDGADI 74 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHHHHHHHHhcCcCccccCCccCCccc---ccccCHHHHHhcCCE
Confidence 479999998 9999999999999996 999999987522222112221 12222 246899999999999
Q ss_pred EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCC-cHHHHHHHHHHhCCCCCCc
Q 025075 92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNS-TVPIAAEVFKKAGTYDPKK 161 (258)
Q Consensus 92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~-~~~i~t~~~~~~~~~~~~k 161 (258)
|++..- ...++++++++..+ .++..++.+|--.+. ....+++++++. +|.++
T Consensus 75 iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~--l~~~~ 128 (329)
T COG0240 75 IVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE--LPDNP 128 (329)
T ss_pred EEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH--cCCCe
Confidence 999852 23356666666544 356777777632111 223667777665 45444
No 64
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.59 E-value=2.3e-07 Score=82.75 Aligned_cols=118 Identities=20% Similarity=0.307 Sum_probs=71.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHH-----HH----hcCCCC--------CeEEEEeCCCc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-----DI----SHMDTG--------AVVRGFLGQPQ 81 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~-----dl----~~~~~~--------~~v~~~~~~~d 81 (258)
.+||+|||+ |.+|..++..|+..|+ +|.+||++++.. ... .+ .....+ ..+. .+++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIS---TATD 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---eeCC
Confidence 468999998 9999999999999998 999999986421 111 00 011110 1122 2346
Q ss_pred hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 160 (258)
Q Consensus 82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~ 160 (258)
+ +++++||+||.+.. .+..+.+.+.+.+.+++ |++++ +||.+... ++++.... ..+.
T Consensus 78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~---~s~la~~~--~~~~ 135 (292)
T PRK07530 78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS---ITRLASAT--DRPE 135 (292)
T ss_pred H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhc--CCcc
Confidence 5 56899999999862 11233445556777776 45655 45655532 23333332 2345
Q ss_pred cEEEE
Q 025075 161 KLLGV 165 (258)
Q Consensus 161 kviG~ 165 (258)
|++|+
T Consensus 136 r~~g~ 140 (292)
T PRK07530 136 RFIGI 140 (292)
T ss_pred cEEEe
Confidence 66664
No 65
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.56 E-value=3.4e-07 Score=81.59 Aligned_cols=99 Identities=20% Similarity=0.242 Sum_probs=63.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-----HHHh-----cCCC--------CCeEEEEeCCCch
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADIS-----HMDT--------GAVVRGFLGQPQL 82 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-----~dl~-----~~~~--------~~~v~~~~~~~d~ 82 (258)
.||+|||+ |.+|..++..|+..|+ +|.+||++++.-.. .++. .... ...+. .+.++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS---YSLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeCcH
Confidence 48999998 9999999999999887 89999998752111 0110 0000 00122 24567
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCC
Q 025075 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN 141 (258)
Q Consensus 83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd 141 (258)
++++++||+||.+.. .+..+.+.+...+.++++ ++++ ++|.+.
T Consensus 76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt 119 (288)
T PRK09260 76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTST 119 (288)
T ss_pred HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence 789999999999862 123444556666777764 4544 455544
No 66
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.56 E-value=3e-07 Score=88.08 Aligned_cols=119 Identities=21% Similarity=0.303 Sum_probs=78.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--------HH-HHhcCC-C--------CCeEEEEeCCCc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--------TA-DISHMD-T--------GAVVRGFLGQPQ 81 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--------~~-dl~~~~-~--------~~~v~~~~~~~d 81 (258)
..||+|||+ |.+|+.+|..++..|+ +|++||++++... .+ .+.... . ...+. .++|
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~---~~~~ 78 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLI---PVTD 78 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccE---EeCC
Confidence 358999998 9999999999999998 9999999875211 01 111110 0 01222 2456
Q ss_pred hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (258)
Q Consensus 82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k 161 (258)
+ +++++||+||.+. .++..+.+++...+.+++|+..+ +.||.+..- ++++..... .|.|
T Consensus 79 ~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~---i~~iA~~~~--~p~r 137 (503)
T TIGR02279 79 L-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLS---ITAIAAGLA--RPER 137 (503)
T ss_pred H-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCC---HHHHHHhcC--cccc
Confidence 6 5689999999986 23466677778889888865443 378877752 234344332 3567
Q ss_pred EEEE
Q 025075 162 LLGV 165 (258)
Q Consensus 162 viG~ 165 (258)
++|+
T Consensus 138 ~~G~ 141 (503)
T TIGR02279 138 VAGL 141 (503)
T ss_pred eEEE
Confidence 7776
No 67
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.54 E-value=7.3e-07 Score=79.25 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=78.9
Q ss_pred EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCCCCCCC
Q 025075 24 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKP 102 (258)
Q Consensus 24 ~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~~ 102 (258)
.|+||+|++|++++..|.++|...+|..+|+........++...... ....++....++.++++++|+||++|......
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~ 80 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW 80 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence 38999999999999999998855699999987642221122221110 01112223457889999999999998753333
Q ss_pred C-CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 103 G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 103 g-~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
+ ..+..+..-|+.-.+.+.+...+.+-+ -+|+|..+.
T Consensus 81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~~ 118 (280)
T PF01073_consen 81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSIS 118 (280)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCcc
Confidence 3 456678899999999999999987544 344555544
No 68
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.51 E-value=5.3e-07 Score=86.53 Aligned_cols=117 Identities=20% Similarity=0.283 Sum_probs=75.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-----HHH----H-hcCCC--------CCeEEEEeCCCch
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TAD----I-SHMDT--------GAVVRGFLGQPQL 82 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-----~~d----l-~~~~~--------~~~v~~~~~~~d~ 82 (258)
.||+|||+ |.+|..++..++..|+ +|++||++++... ..+ + .+... ...+. .+.++
T Consensus 8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~---~~~~~ 81 (507)
T PRK08268 8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLR---PVEAL 81 (507)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeCCH
Confidence 58999998 9999999999999998 9999999875111 111 1 11100 01233 23466
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (258)
Q Consensus 83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k 161 (258)
+++++||+||.+. .++..+.+.+...+.+.+ |++++ +||.+..- ++++.... -.|+|
T Consensus 82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~---i~~la~~~--~~p~r 139 (507)
T PRK08268 82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLS---ITAIAAAL--KHPER 139 (507)
T ss_pred -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCccc
Confidence 4688999999986 234666677777888887 45555 56665531 23333333 24578
Q ss_pred EEEE
Q 025075 162 LLGV 165 (258)
Q Consensus 162 viG~ 165 (258)
++|+
T Consensus 140 ~~G~ 143 (507)
T PRK08268 140 VAGL 143 (507)
T ss_pred EEEE
Confidence 8887
No 69
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.50 E-value=8.9e-07 Score=79.59 Aligned_cols=119 Identities=21% Similarity=0.306 Sum_probs=70.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HH-------HHhcC-C----CCCeEEEEeCCCchHhhh
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TA-------DISHM-D----TGAVVRGFLGQPQLENAL 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~-------dl~~~-~----~~~~v~~~~~~~d~~~a~ 86 (258)
.+||+|||+ |.+|..++..|+..|+ +|+++|++++... .. ..... . ....+. .++|+.+++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIR---MEAGLAAAV 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceE---EeCCHHHHh
Confidence 468999998 9999999999998887 8999999774211 11 11000 0 000122 235667789
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~ 165 (258)
++||+||++.- + ......++...+..+.+ ++++ +||.+... ++++..... .+.+++|+
T Consensus 78 ~~aDlVi~av~----~----------~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~---~~~l~~~~~--~~~~~ig~ 136 (311)
T PRK06130 78 SGADLVIEAVP----E----------KLELKRDVFARLDGLCDPDTIF--ATNTSGLP---ITAIAQAVT--RPERFVGT 136 (311)
T ss_pred ccCCEEEEecc----C----------cHHHHHHHHHHHHHhCCCCcEE--EECCCCCC---HHHHHhhcC--CcccEEEE
Confidence 99999999862 1 12233455556666654 4544 45555432 233333322 24567776
No 70
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.50 E-value=4e-06 Score=75.88 Aligned_cols=178 Identities=16% Similarity=0.057 Sum_probs=100.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEe----CCCchHhhhCCCCE
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL----GQPQLENALTGMDL 91 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDi 91 (258)
|.++++|.|+||+|++|++++..|...|. +|++++++.. .....++........+..+. ...++.+.++++|+
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 83 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDL 83 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCE
Confidence 56678999999999999999999999887 7877776643 11111111110001122221 12235667889999
Q ss_pred EEEcCCCCCCCCCc-hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC-------cHHHHHHHHH-----HhCCCC
Q 025075 92 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-------TVPIAAEVFK-----KAGTYD 158 (258)
Q Consensus 92 VIi~ag~~~~~g~~-r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~-------~~~i~t~~~~-----~~~~~~ 158 (258)
||++|+.......+ ..+++..|+.....+++.+.+...-..++.+|.-... ....+.+-.+ .....+
T Consensus 84 vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (338)
T PLN00198 84 VFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKP 163 (338)
T ss_pred EEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCC
Confidence 99999743211112 2345678999999999998876422344444431100 0000011000 000123
Q ss_pred CCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 159 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
|....|.+.+...++....++..+++...++ ..|+|.+
T Consensus 164 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 164 PTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 3444555555455555566777788777777 4588875
No 71
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.49 E-value=1.5e-06 Score=78.18 Aligned_cols=120 Identities=23% Similarity=0.254 Sum_probs=72.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-H--------HHhcCCC---------CCeEEEEeCCCc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-A--------DISHMDT---------GAVVRGFLGQPQ 81 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-~--------dl~~~~~---------~~~v~~~~~~~d 81 (258)
++||+|||+ |.+|++++..|+..|+ +|++||++++.... . .+..... ...+. .++|
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~---~~~~ 75 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR---VTDS 75 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE---EECc
Confidence 468999997 9999999999999998 89999998641110 0 1111110 01122 2457
Q ss_pred hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (258)
Q Consensus 82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k 161 (258)
+.+++++||+|+.+.. .+....+.+...+.+..++..++ .||.... .++++..... .+.+
T Consensus 76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~---~~~~la~~~~--~~~~ 135 (308)
T PRK06129 76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSAL---LASAFTEHLA--GRER 135 (308)
T ss_pred HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCC---CHHHHHHhcC--Cccc
Confidence 7788999999999861 11333444555676666654444 4655442 2333444332 2445
Q ss_pred EEEE
Q 025075 162 LLGV 165 (258)
Q Consensus 162 viG~ 165 (258)
+++.
T Consensus 136 ~~~~ 139 (308)
T PRK06129 136 CLVA 139 (308)
T ss_pred EEEE
Confidence 6655
No 72
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.48 E-value=1.5e-06 Score=83.20 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=66.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH-H--------Hh---cCCC--CCeEEEEeCCCchHhhh
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-D--------IS---HMDT--GAVVRGFLGQPQLENAL 86 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~-d--------l~---~~~~--~~~v~~~~~~~d~~~a~ 86 (258)
+||+|||+ |.+|+.++..|+..|+ +|.+||++++....+ + +. .... ...+. .++++.+++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~---~~~~~~ea~ 78 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLT---FCASLAEAV 78 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceE---eeCCHHHHh
Confidence 58999998 9999999999999998 999999987522111 0 00 0000 00122 245777889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC
Q 025075 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 142 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~ 142 (258)
++||+||.+.. .+..+.+++...+.+++|+.. ++.||.+..
T Consensus 79 ~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi 119 (495)
T PRK07531 79 AGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA-LIGSSTSGF 119 (495)
T ss_pred cCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence 99999999861 124445566666777775443 347777664
No 73
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.47 E-value=1.7e-06 Score=78.91 Aligned_cols=169 Identities=15% Similarity=0.045 Sum_probs=102.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hH-HHHHhc---CCCCCeEEEEeC----CCchHhhhCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GV-TADISH---MDTGAVVRGFLG----QPQLENALTG 88 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~-~~dl~~---~~~~~~v~~~~~----~~d~~~a~~~ 88 (258)
.+++||.|+||+|++|++++..|...|. +|+.+|+.... .. ..++.. ......+..+.+ ..++.+.+++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 4457999999999999999999998886 89999975421 11 111110 000012222221 1234556789
Q ss_pred CCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC------CCCcHHHHHHHHHHhCCCCCC
Q 025075 89 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPK 160 (258)
Q Consensus 89 aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP------vd~~~~i~t~~~~~~~~~~~~ 160 (258)
+|+||++|+....+ .....+....|+....++.+.+++.+.+ .++.+|.. .+. +. . +.....|.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~--~~-~----e~~~~~p~ 162 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDL--PK-I----EERIGRPL 162 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCC--CC-C----CCCCCCCC
Confidence 99999998754322 1233456788999999999999887543 34434311 110 00 0 11112344
Q ss_pred cEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 161 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 161 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
...|.+.+...++....++..+++...++ ..++|.+
T Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR 199 (348)
T ss_pred ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence 56676665555655556677788888888 4699976
No 74
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.47 E-value=2.5e-06 Score=80.42 Aligned_cols=171 Identities=12% Similarity=0.040 Sum_probs=99.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..+.|||.|+||+|+||++++..|..+|. +|+.+|+.... ....+.+......+..+.. +-+++.+.++|+||++|
T Consensus 117 ~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~-~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlA 192 (436)
T PLN02166 117 GRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTG-RKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLA 192 (436)
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCc-cHhHhhhhccCCceEEEEC-ccccccccCCCEEEECc
Confidence 34568999999999999999999999887 99999975321 0111111100112222221 11234578999999999
Q ss_pred CCCC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC------CCCCcHHHHHHHHHH-hCCCCCCcEEEEee
Q 025075 97 GVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVNSTVPIAAEVFKK-AGTYDPKKLLGVTM 167 (258)
Q Consensus 97 g~~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN------Pvd~~~~i~t~~~~~-~~~~~~~kviG~t~ 167 (258)
+... ....+..+.+..|+.....+++.+++.+. .+|.+|. |.+. ..++-.+. .....+....|.+.
T Consensus 193 a~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~---p~~E~~~~~~~p~~p~s~Yg~SK 267 (436)
T PLN02166 193 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEH---PQKETYWGNVNPIGERSCYDEGK 267 (436)
T ss_pred eeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCC---CCCccccccCCCCCCCCchHHHH
Confidence 7432 11234456788999999999999988763 5555543 1110 00010000 00122234455555
Q ss_pred ccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075 168 LDVVRANTFVAEVLGLDPRDVDV-PVVGGH 196 (258)
Q Consensus 168 lds~R~~~~la~~l~v~~~~v~~-~v~G~h 196 (258)
+...++....++..+++..-++. .++|.+
T Consensus 268 ~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~ 297 (436)
T PLN02166 268 RTAETLAMDYHRGAGVEVRIARIFNTYGPR 297 (436)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccccCCC
Confidence 54555555556666777666663 478865
No 75
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.45 E-value=8.1e-07 Score=79.37 Aligned_cols=121 Identities=20% Similarity=0.300 Sum_probs=71.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-H--------HHHhcCC-CC-----CeEEEEeCCCchHh
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-T--------ADISHMD-TG-----AVVRGFLGQPQLEN 84 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~--------~dl~~~~-~~-----~~v~~~~~~~d~~~ 84 (258)
..||+|||+ |.+|..++..|+..|+ +|++||.+++... . .++.... .. ........++++ +
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E 79 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence 358999998 9999999999999887 9999999864211 0 0111110 00 001111123454 5
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL 163 (258)
Q Consensus 85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi 163 (258)
++++||+||.+. .++..+...+...+.++. |++++ +||-+... ++++.... -.+.+++
T Consensus 80 ~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~---~~~l~~~~--~~~~r~~ 138 (295)
T PLN02545 80 ELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS---ITRLASAT--QRPQQVI 138 (295)
T ss_pred HhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCCcceE
Confidence 799999999986 122444556666677765 45544 46655532 22222222 1235677
Q ss_pred EE
Q 025075 164 GV 165 (258)
Q Consensus 164 G~ 165 (258)
|+
T Consensus 139 g~ 140 (295)
T PLN02545 139 GM 140 (295)
T ss_pred EE
Confidence 66
No 76
>PLN02427 UDP-apiose/xylose synthase
Probab=98.41 E-value=2.1e-06 Score=79.25 Aligned_cols=118 Identities=16% Similarity=0.083 Sum_probs=73.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHH-HHHhcCCCCCeEEEEe----CCCchHhhhCCCC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFL----GQPQLENALTGMD 90 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~-~dl~~~~~~~~v~~~~----~~~d~~~a~~~aD 90 (258)
+.++|||.|+||+|++|++++..|..+ +. +|+.+|++...... .+.........+..+. ...++.++++++|
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 556789999999999999999999887 45 89999976532111 1110000011222221 1224567788999
Q ss_pred EEEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075 91 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 91 iVIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
+||++|+...... ....+.+..|+.-...+++..++.+ ..+|.+|.
T Consensus 89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS 136 (386)
T PLN02427 89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST 136 (386)
T ss_pred EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence 9999997532211 1223456678877788888877665 34555553
No 77
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.40 E-value=1.9e-06 Score=63.80 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=62.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEE-eCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
||+|||+ |.+|++++..|...+. ..+|.++ ++++++.. ++.... . .... ..+..++++++|+||++.
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~--~~~~~~-~--~~~~--~~~~~~~~~~advvilav--- 69 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAA--ELAKEY-G--VQAT--ADDNEEAAQEADVVILAV--- 69 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH--HHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH--HHHHhh-c--cccc--cCChHHhhccCCEEEEEE---
Confidence 7999998 9999999999988872 2388866 88765322 222211 1 1111 124578999999999997
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
+|.. +.++++.+....++.++|-++||
T Consensus 70 -~p~~------------~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 70 -KPQQ------------LPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --GGG------------HHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CHHH------------HHHHHHHHhhccCCCEEEEeCCC
Confidence 2221 45677777445578888888876
No 78
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=98.36 E-value=5.2e-06 Score=74.73 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh----hHHHHHhcCCCCCe--EEEEeCCCchHhhhCCCCEE
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAV--VRGFLGQPQLENALTGMDLV 92 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~----g~~~dl~~~~~~~~--v~~~~~~~d~~~a~~~aDiV 92 (258)
..++|+|+||+|++|+.+...|+.+|+ +|+--=++++. ....+|....-... ..++.....+.+++++||.|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEE
Confidence 457999999999999999999999999 67766666542 13444443321111 11122334678999999999
Q ss_pred EEcCCCCCCCCC-chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 93 IIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 93 Ii~ag~~~~~g~-~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
|++|....-... ...+++.-.++-.+.+.+.+.++. ...=+|+|+...
T Consensus 83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a 131 (327)
T KOG1502|consen 83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA 131 (327)
T ss_pred EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence 999864322111 234678889999999999999887 444455666544
No 79
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=98.35 E-value=8.9e-06 Score=72.10 Aligned_cols=167 Identities=14% Similarity=0.043 Sum_probs=95.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHHHHHhcCCCCCeEEEE----eCCCchHhhhCC--CCEE
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGF----LGQPQLENALTG--MDLV 92 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~--aDiV 92 (258)
||.|+||+|++|.+++..|...+...+|.++|+... .....++... ..+..+ ....++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 589999999999999998887663237888886432 1111122111 112111 112245566776 8999
Q ss_pred EEcCCCCCC--CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC-----CCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075 93 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-----NSTVPIAAEVFKKAGTYDPKKLLGV 165 (258)
Q Consensus 93 Ii~ag~~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv-----d~~~~i~t~~~~~~~~~~~~kviG~ 165 (258)
|.+++.... ....-...+..|+.....+++.+.+...+..++.+|... ....+ .+ .....++....|.
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~-~~----e~~~~~~~~~Y~~ 152 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDA-FT----ETTPLAPSSPYSA 152 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCC-cC----CCCCCCCCCchHH
Confidence 999875321 112234466789998999999888875555565554310 00000 00 1111334445555
Q ss_pred eeccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075 166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGH 196 (258)
Q Consensus 166 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h 196 (258)
+.....++-..+++..+++..-++. .++|.+
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 5444555555567777777766763 477754
No 80
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=98.33 E-value=1.6e-05 Score=72.32 Aligned_cols=171 Identities=16% Similarity=0.073 Sum_probs=98.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEE----EeCCCchHhhhCC--CCEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG----FLGQPQLENALTG--MDLVI 93 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~--aDiVI 93 (258)
|+||.|+||+|++|++++..|..+|. ..++++|..........+.+......+.. +....++.+++++ +|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 46899999999999999999998885 35677786532222122221100011111 1111234555664 89999
Q ss_pred EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhC-------CC-cEEEEecCCCC------CcHHHHHHHHHHhCCC
Q 025075 94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPVN------STVPIAAEVFKKAGTY 157 (258)
Q Consensus 94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~-------p~-a~viv~tNPvd------~~~~i~t~~~~~~~~~ 157 (258)
++||..... .....+.+..|+.....+++.+.++. +. ..++.+|...- ... .+++ ....
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~-~~~E----~~~~ 154 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDD-FFTE----TTPY 154 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCC-CcCC----CCCC
Confidence 999864321 11234567789988888888887642 12 24444443210 000 0011 1112
Q ss_pred CCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
.+....|.+.+...++...+++..+++..-++ ..++|.+
T Consensus 155 ~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~ 194 (355)
T PRK10217 155 APSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPY 194 (355)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence 34445566666666676777888888777777 5688876
No 81
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=98.32 E-value=4.9e-06 Score=75.24 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=74.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEE----eCCCchHhhhCCCCEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGF----LGQPQLENALTGMDLVI 93 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDiVI 93 (258)
.++|.|+||+|++|++++..|+..+...+|+++|++..... ..++.. ..+..+ ....++.++++++|+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 45899999999999999999988753238999988653211 111211 112111 11224566788999999
Q ss_pred EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
++||....+ ..+..+.+..|+.....+++.+.+.+.. .+|.+|
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 999864322 2234567889999999999998876543 455454
No 82
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.32 E-value=4.5e-06 Score=75.08 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=70.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
|||.|+||+|++|++++..|...|+ +|..++++...... +.+.... .+. ++....++.++++++|+||.+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~~--l~~~~v~-~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKASF--LKEWGAE-LVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhhh--HhhcCCE-EEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 5899999999999999999999887 89999887532211 1111110 111 1111234678899999999987532
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
.. ...+....|......+++.+++.+-+ .+|.+|
T Consensus 76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S 109 (317)
T CHL00194 76 PS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS 109 (317)
T ss_pred CC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence 11 12234556777778888888887654 344444
No 83
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.32 E-value=4.5e-06 Score=76.92 Aligned_cols=171 Identities=15% Similarity=0.060 Sum_probs=97.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE--EEeCCCchHhhhCCCCEEEE
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR--GFLGQPQLENALTGMDLVII 94 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~--~~~~~~d~~~a~~~aDiVIi 94 (258)
..+.|||.|+||+|++|++++..|...|+ +|..+|+.... .. .......... ++....++..+++++|+||+
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih 91 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HM---SEDMFCHEFHLVDLRVMENCLKVTKGVDHVFN 91 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-cc---ccccccceEEECCCCCHHHHHHHHhCCCEEEE
Confidence 34567999999999999999999998887 89999975321 00 0000000111 01001123455789999999
Q ss_pred cCCCCCCCC---CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC-----CCcH--HHHHHHHHHhCCCCCCcEEE
Q 025075 95 PAGVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-----NSTV--PIAAEVFKKAGTYDPKKLLG 164 (258)
Q Consensus 95 ~ag~~~~~g---~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv-----d~~~--~i~t~~~~~~~~~~~~kviG 164 (258)
+|+.....+ ......+..|+.....+++.+.+.+.+. +|.+|... .... .-+.+ .....++|...+|
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~-~V~~SS~~vYg~~~~~~~~~~~~E--~~~~p~~p~s~Yg 168 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-FFYASSACIYPEFKQLETNVSLKE--SDAWPAEPQDAYG 168 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCE-EEEeCchhhcCCccccCcCCCcCc--ccCCCCCCCCHHH
Confidence 986431111 1223346789999999999998876553 44344321 0000 00000 0000133444555
Q ss_pred EeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 165 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 165 ~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
.+.....++....++..+++..-++ ..++|.+
T Consensus 169 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 201 (370)
T PLN02695 169 LEKLATEELCKHYTKDFGIECRIGRFHNIYGPF 201 (370)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCccCCC
Confidence 5555555555555677788877777 4588876
No 84
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.32 E-value=2.3e-05 Score=71.35 Aligned_cols=175 Identities=13% Similarity=0.043 Sum_probs=95.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCCCCCe-EE-EEeCCCchHhhhCC--CCEEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAV-VR-GFLGQPQLENALTG--MDLVII 94 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~--aDiVIi 94 (258)
.++|.|+||+|++|++++..|.+.|. +|+.+|++..... ..+......... +. .+....++.+.+++ .|+||.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 46899999999999999999999887 8999998764211 111111110001 11 11111234455554 599999
Q ss_pred cCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHH
Q 025075 95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR 172 (258)
Q Consensus 95 ~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R 172 (258)
+++.+... ..+-...+..|+.....+++.+.+.+....++.+|...-.-..--..-.......++....|.+.....+
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~ 161 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAEL 161 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHHHHH
Confidence 99853221 1123456778898889999988766533356555542100000000000011113344566665544445
Q ss_pred HHHHHHHHh-------CCCCCcee-EEEEecC
Q 025075 173 ANTFVAEVL-------GLDPRDVD-VPVVGGH 196 (258)
Q Consensus 173 ~~~~la~~l-------~v~~~~v~-~~v~G~h 196 (258)
+...+++.+ +++...++ +.++|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 162 VIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred HHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 555555554 55555566 4577764
No 85
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.31 E-value=8.9e-06 Score=73.20 Aligned_cols=100 Identities=20% Similarity=0.316 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHh--cCC------CCCeEEEEeCCCchHhhhCCCCE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMD------TGAVVRGFLGQPQLENALTGMDL 91 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~--~~~------~~~~v~~~~~~~d~~~a~~~aDi 91 (258)
||||+|||+ |.+|+.++..|...|+ +|.+||+++.....+.-. +.. .+.... .+.++++.++++|+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLR---ATTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeE---EeCCHHHHHhCCCE
Confidence 579999998 9999999999999887 899999976422211111 000 001122 13466678899999
Q ss_pred EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075 92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 141 (258)
Q Consensus 92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd 141 (258)
||++... ..+.++++.+..+ .|+.+++..+|.++
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 9999631 1134444555555 36777888887655
No 86
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.30 E-value=5.5e-06 Score=73.45 Aligned_cols=166 Identities=19% Similarity=0.146 Sum_probs=97.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC-CEEEEcCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM-DLVIIPAGVP 99 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a-DiVIi~ag~~ 99 (258)
|+|.|+|++|++|++++..|.+.|+ +|+.+|+......... .+... ............+.++++ |.||++++..
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~--~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEF--VVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccce--eeecccchHHHHHHHhcCCCEEEEccccC
Confidence 3599999999999999999999887 9999998654222111 11110 000000112234556677 9999998865
Q ss_pred CCCCCch---hhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH-----HHHHHHHHHhCCCCCCcEEEEeeccHH
Q 025075 100 RKPGMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV-----PIAAEVFKKAGTYDPKKLLGVTMLDVV 171 (258)
Q Consensus 100 ~~~g~~r---~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~-----~i~t~~~~~~~~~~~~kviG~t~lds~ 171 (258)
..++..+ .++...|+...+++++...+.. -..++..|. +...- ..+++-. .. ..|....|.+.+...
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~~~~v~~ss-~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~E 150 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFASS-VSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAAE 150 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeCC-CceECCCCCCCCccccc--CC-CCCCCHHHHHHHHHH
Confidence 5444332 2478899999999999999832 223333222 11100 0111110 11 122223555655555
Q ss_pred HHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 172 RANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 172 R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
+.....++..+++..-++ ..++|.+
T Consensus 151 ~~~~~~~~~~~~~~~ilR~~~vyGp~ 176 (314)
T COG0451 151 QLLRAYARLYGLPVVILRPFNVYGPG 176 (314)
T ss_pred HHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence 555555556678888888 4699876
No 87
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.29 E-value=5.7e-06 Score=77.39 Aligned_cols=119 Identities=24% Similarity=0.313 Sum_probs=74.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC----------------CCeEEEEeCCCchHh
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQLEN 84 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~~~d~~~ 84 (258)
|||+|||. |.+|..++..|+..|+ +|..||+++.+.. ++..... ...+. .++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~v~--~l~~g~~~~~e~~l~~~~~~~~~~g~l~---~~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEKVD--KLNKGKSPIYEPGLDELLAKALAAGRLR---ATTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHHHH--HhhcCCCCCCCCCHHHHHHHhhhcCCeE---EECCHHH
Confidence 58999998 9999999999999998 8999999865322 1222110 01122 2356777
Q ss_pred hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEe-cCCCCCcHHHHHHHHHH
Q 025075 85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK 153 (258)
Q Consensus 85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNPvd~~~~i~t~~~~~ 153 (258)
++++||+||++.+.|..... .-++..+.+.++.+.++. ++.+++.. |-|..+.-.+...+..+
T Consensus 73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 89999999999887654321 123444555666666553 45555443 34555443344344433
No 88
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.28 E-value=1.2e-05 Score=75.95 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
+.|||.|+||+|+||++++..|..+|. +|+.+|...... ...+.+......+..+.. +-+..++.++|+||++|+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~-~~~~~~~~~~~~~~~i~~-D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGR-KENVMHHFSNPNFELIRH-DVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccc-hhhhhhhccCCceEEEEC-CccChhhcCCCEEEEeeee
Confidence 447999999999999999999999887 899998653210 011111001112222221 1123567899999999975
Q ss_pred CC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 99 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 99 ~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
.. ....+..+.+..|+.....+++.+++.+. .+|.+|
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S 232 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 232 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 32 11123456778999999999999987753 555444
No 89
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.28 E-value=1.4e-05 Score=71.56 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=72.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcC-CCCCeEEEE----eCCCchHhhhCCCCEEEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTGAVVRGF----LGQPQLENALTGMDLVII 94 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~-~~~~~v~~~----~~~~d~~~a~~~aDiVIi 94 (258)
+||.|+||+|++|++++..|..+|+ +|+.++++... .....+... .....+..+ ....++.++++++|+||+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 5899999999999999999999987 88888876542 111111111 001122211 122346677899999999
Q ss_pred cCCCCCCC-CCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEe
Q 025075 95 PAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLI 136 (258)
Q Consensus 95 ~ag~~~~~-g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~ 136 (258)
+|+..... .....+.+..|+.....+++.+.+. ... .++.+
T Consensus 83 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~ 125 (322)
T PLN02662 83 TASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT 125 (322)
T ss_pred eCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence 99753221 1222356778999999999988776 433 34433
No 90
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.28 E-value=8.1e-06 Score=76.55 Aligned_cols=111 Identities=19% Similarity=0.134 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCC---C----------eEEEEeCCCchHhh
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG---A----------VVRGFLGQPQLENA 85 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~---~----------~v~~~~~~~d~~~a 85 (258)
.++||+|||. |.+|.++|..|+..|+ +|..||+++.+-.. +.....+ . .......+++
T Consensus 2 ~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~---- 72 (415)
T PRK11064 2 SFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRATTT---- 72 (415)
T ss_pred CccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceeeecc----
Confidence 4679999998 9999999999999997 99999998753222 2211100 0 0000111222
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEe-cCCCCCcH
Q 025075 86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTV 144 (258)
Q Consensus 86 ~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~-tNPvd~~~ 144 (258)
+++||+||++...|.++.. ..++..+.+.++.+.++.+ +.++|+- |-|..+.-
T Consensus 73 ~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~ 127 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATE 127 (415)
T ss_pred cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHH
Confidence 4589999999987754321 1234445666666766654 4454443 45666433
No 91
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.27 E-value=9.2e-06 Score=73.11 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
..|||+|||+ |.+|++++..|...|+ +|.+||+++. .++.++++++|+||++..
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp- 56 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS- 56 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence 3479999998 9999999999999997 9999998642 234577889999999862
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCC
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP 139 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP 139 (258)
...++++++.+..+ .++.+++..|+.
T Consensus 57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 57 ---------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 11245555666543 466777777763
No 92
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.25 E-value=4.4e-06 Score=68.26 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=47.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|+||++||. |.+|+.++..|...|+ +|..||+++++.. ++.+.. ... ..++.+++++||+||.+.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~~~~~--~~~~~g----~~~---~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSPEKAE--ALAEAG----AEV---ADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSHHHHH--HHHHTT----EEE---ESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccchhhhh--hhHHhh----hhh---hhhhhhHhhcccceEeec
Confidence 679999998 9999999999999998 9999998764322 233322 222 246788999999999985
No 93
>PLN02572 UDP-sulfoquinovose synthase
Probab=98.25 E-value=1.4e-05 Score=75.59 Aligned_cols=174 Identities=14% Similarity=0.134 Sum_probs=100.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hh--------------HHHH-HhcCCCCCeEEEEe---
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--------------VTAD-ISHMDTGAVVRGFL--- 77 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g--------------~~~d-l~~~~~~~~v~~~~--- 77 (258)
+++||.|+||+|++|++++..|+..|. +|+++|.... .. ..++ +.+.. ...+..+.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl 122 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI 122 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence 457899999999999999999999887 8999985321 00 0000 00000 00122111
Q ss_pred -CCCchHhhhC--CCCEEEEcCCCCCCC-C-Cch---hhHHHHhHHHHHHHHHHhhhhCCCcEEEEec------CC---C
Q 025075 78 -GQPQLENALT--GMDLVIIPAGVPRKP-G-MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS------NP---V 140 (258)
Q Consensus 78 -~~~d~~~a~~--~aDiVIi~ag~~~~~-g-~~r---~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t------NP---v 140 (258)
...++.++++ ++|+||++|+....+ . .+. ...+..|+.....+++.+.+++....++.+| +| +
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~ 202 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI 202 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence 1123445565 489999998643211 1 111 2335679999999999998887654555433 21 1
Q ss_pred CCcHHH-HHHHHHHh---CCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 141 NSTVPI-AAEVFKKA---GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 141 d~~~~i-~t~~~~~~---~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
+-. ++ .++..... ....|....|.+.+....+....++..|++...++ ..|+|.+
T Consensus 203 ~E~-~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~ 262 (442)
T PLN02572 203 EEG-YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 262 (442)
T ss_pred ccc-ccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence 100 00 00000000 01234567788766656666677788898888888 5699986
No 94
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.25 E-value=1.3e-05 Score=79.36 Aligned_cols=168 Identities=14% Similarity=0.044 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C--Cc-hHhhhCCCCEE
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--PQ-LENALTGMDLV 92 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~--~d-~~~a~~~aDiV 92 (258)
++|||.|+||+|++|++++..|... ++ +|+.+|++..... ++... ..+..+.+ + .+ +.++++++|+|
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~--~~~~~---~~~~~~~gDl~d~~~~l~~~l~~~D~V 386 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS--RFLGH---PRFHFVEGDISIHSEWIEYHIKKCDVV 386 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh--hhcCC---CceEEEeccccCcHHHHHHHhcCCCEE
Confidence 4579999999999999999988874 66 8999998653111 11110 11221111 1 11 34568899999
Q ss_pred EEcCCCCCC--CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH----HHHHHHHHH--hCCC-CCCcEE
Q 025075 93 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV----PIAAEVFKK--AGTY-DPKKLL 163 (258)
Q Consensus 93 Ii~ag~~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~----~i~t~~~~~--~~~~-~~~kvi 163 (258)
|++|+.... ......+++..|+.....+.+.+.++++ .+|.+|.. .+.. ..+++-... .... ++....
T Consensus 387 iHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~--~~V~~SS~-~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Y 463 (660)
T PRK08125 387 LPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNK--RIIFPSTS-EVYGMCTDKYFDEDTSNLIVGPINKQRWIY 463 (660)
T ss_pred EECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCC--eEEEEcch-hhcCCCCCCCcCccccccccCCCCCCccch
Confidence 999875431 2223456778899999999999998763 44444431 1000 001110000 0000 122356
Q ss_pred EEeeccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075 164 GVTMLDVVRANTFVAEVLGLDPRDVDV-PVVGGH 196 (258)
Q Consensus 164 G~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h 196 (258)
|.+.+...++....++..+++...++. .|+|.+
T Consensus 464 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 464 SVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 666665666666667778888888884 588875
No 95
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.24 E-value=2.2e-05 Score=71.77 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC--C-------CCCeEEEEeCCCchHhhhCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D-------TGAVVRGFLGQPQLENALTG 88 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~--~-------~~~~v~~~~~~~d~~~a~~~ 88 (258)
.++|||+|||+ |.+|++++..|...+ ++++|.++++....+.-.+. . .+..+. .++|+.+++++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~---~t~d~~~a~~~ 77 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLR---ATTDFAEAANC 77 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeE---EECCHHHHHhc
Confidence 45689999998 999999999999877 47888876542222111111 0 011222 24677788999
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCc-HHHHHHHHHHhCCCCCCcE
Q 025075 89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNST-VPIAAEVFKKAGTYDPKKL 162 (258)
Q Consensus 89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~-~~i~t~~~~~~~~~~~~kv 162 (258)
+|+||++.- ...++++++.+..+ .++..++.++|-++.- ...+++.+++. +|..++
T Consensus 78 aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~--l~~~~~ 135 (341)
T PRK12439 78 ADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV--LPGHPA 135 (341)
T ss_pred CCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH--cCCCCe
Confidence 999999862 22345666666655 4677888899876631 11244555543 444444
No 96
>PLN02650 dihydroflavonol-4-reductase
Probab=98.24 E-value=1.9e-05 Score=71.94 Aligned_cols=176 Identities=15% Similarity=0.023 Sum_probs=98.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhc-CCCCCeEEEE----eCCCchHhhhCCCCEE
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISH-MDTGAVVRGF----LGQPQLENALTGMDLV 92 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~-~~~~~~v~~~----~~~~d~~~a~~~aDiV 92 (258)
..++|.|+||+|++|++++..|+..|. +|++++++.... ...++.. ......+..+ .....+.+.++++|.|
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V 81 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV 81 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence 345899999999999999999999887 888888765321 1112211 1000112211 1123456778899999
Q ss_pred EEcCCCCCCCCCc-hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC-----cHHHHHHHHH---Hh--CCCCCCc
Q 025075 93 IIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-----TVPIAAEVFK---KA--GTYDPKK 161 (258)
Q Consensus 93 Ii~ag~~~~~g~~-r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~-----~~~i~t~~~~---~~--~~~~~~k 161 (258)
|++|+.......+ ..+.+..|+.....+++.+.+.+.-..|+.+|..... ..+...+-.+ .. ...++..
T Consensus 82 iH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 161 (351)
T PLN02650 82 FHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW 161 (351)
T ss_pred EEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence 9998753211111 2356788999999999998876532345555432110 0000000000 00 0000112
Q ss_pred EEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 162 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 162 viG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
.+|.+.+....+....++..|++..-++ +.++|+.
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~ 197 (351)
T PLN02650 162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPF 197 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCC
Confidence 3444544444555556677788777777 5688875
No 97
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.23 E-value=9.8e-06 Score=75.32 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=67.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC------------CCeEEEEeCCCchHhhhCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENALTG 88 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~~~d~~~a~~~ 88 (258)
|||+|||+ |.||..++..++. |+ +|+.||+++++-. .+..... ....+ +..+++..++.++
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~kv~--~l~~g~~~~~e~~l~~~l~~~~~~-l~~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSRVA--MLNDRISPIVDKEIQQFLQSDKIH-FNATLDKNEAYRD 73 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHHHH--HHHcCCCCCCCcCHHHHHHhCCCc-EEEecchhhhhcC
Confidence 58999998 9999999977774 76 8999999875211 1111100 01111 2234556678899
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCc
Q 025075 89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNST 143 (258)
Q Consensus 89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~ 143 (258)
||+||++.+.|...... ..++..+++.++.|.+..|+.++++ .|-|..+.
T Consensus 74 ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt 124 (388)
T PRK15057 74 ADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFT 124 (388)
T ss_pred CCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchH
Confidence 99999998765322111 1234455555566655445555443 45676643
No 98
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.21 E-value=3.7e-05 Score=68.49 Aligned_cols=121 Identities=21% Similarity=0.231 Sum_probs=71.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC-CCeEEE-EeCCCchHhhhCCCCEEEEcCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRG-FLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~-~~~v~~-~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
|||+|||+ |.+|+.++..|...|+ +|.++|++.+....+.-..... ...... .....+..+ ++++|+||++..
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~k- 75 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAVK- 75 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEecc-
Confidence 58999998 9999999999998886 8999998654211111111000 001110 011334444 489999999963
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE-EEeec
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTML 168 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi-G~t~l 168 (258)
+.. +.++++.+..+ .++..|+...|.++..- .+.+. +++.+++ |++..
T Consensus 76 ---~~~------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~-----~l~~~--~~~~~i~~~~~~~ 125 (304)
T PRK06522 76 ---AYQ------------LPAALPSLAPLLGPDTPVLFLQNGVGHLE-----ELAAY--IGPERVLGGVVTH 125 (304)
T ss_pred ---ccc------------HHHHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHHh--cCcccEEEEEEEE
Confidence 111 23444555543 46778888999987432 22222 5566666 34433
No 99
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=98.20 E-value=3.7e-07 Score=81.16 Aligned_cols=118 Identities=20% Similarity=0.232 Sum_probs=70.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEE----EEeC----CCchHhhhC--CCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVR----GFLG----QPQLENALT--GMD 90 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~----~~~~----~~d~~~a~~--~aD 90 (258)
|.|+||+|++|+.++..|+..+. .+|+++|+++.. ....++........++ .+.+ ...+..+++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 68999999999999999988765 589999998752 2223332111111121 1111 123456677 999
Q ss_pred EEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec----CCCC
Q 025075 91 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVN 141 (258)
Q Consensus 91 iVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t----NPvd 141 (258)
+|+++|..-.-| ...-.+.+..|+--.+.+++...+++-+-+|.+-| ||++
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptn 136 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTN 136 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--S
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCc
Confidence 999998642211 12346678899999999999999998776666654 5666
No 100
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=98.20 E-value=1.6e-05 Score=71.06 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=73.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
|||.|+||+|++|++++..|...|. +|+.+|++..... ++.+........++....++.++++++|+||.+++...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~ 76 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRR--NLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYR 76 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCcccc--ccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecc
Confidence 4899999999999999999999886 8999998654211 11111110001111112245677889999999986432
Q ss_pred CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
....+..+....|+.....+++.+.+.+-. .++.+|
T Consensus 77 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 112 (328)
T TIGR03466 77 LWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS 112 (328)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 223344566788998889999888876533 344444
No 101
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.20 E-value=2.7e-05 Score=69.45 Aligned_cols=119 Identities=12% Similarity=0.138 Sum_probs=71.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC-----CCeEE-EEeCCCchHhhhCCCCEEEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-----GAVVR-GFLGQPQLENALTGMDLVII 94 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~-----~~~v~-~~~~~~d~~~a~~~aDiVIi 94 (258)
|||+|+|+ |.+|..++..|...|+ +|.++++ +++-.. +.+... ..... .....++.++..+++|+||+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKRAKA--LRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHHHHH--HHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 68999998 9999999999999887 8999998 432111 111110 00100 00112355555689999999
Q ss_pred cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE-Eeec
Q 025075 95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTML 168 (258)
Q Consensus 95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG-~t~l 168 (258)
+...+ . +.++++.+..+ .++.+|+.+.|.++..- .+... +|++++++ ++..
T Consensus 75 avk~~----~------------~~~~~~~l~~~~~~~~~ii~~~nG~~~~~-----~l~~~--~~~~~v~~g~~~~ 127 (305)
T PRK12921 75 AVKAY----Q------------LDAAIPDLKPLVGEDTVIIPLQNGIGQLE-----QLEPY--FGRERVLGGVVFI 127 (305)
T ss_pred Eeccc----C------------HHHHHHHHHhhcCCCCEEEEeeCCCChHH-----HHHHh--CCcccEEEEEEEE
Confidence 86321 1 24445555554 35677888899987322 22222 67777774 4433
No 102
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=98.19 E-value=1.1e-05 Score=73.34 Aligned_cols=167 Identities=14% Similarity=0.043 Sum_probs=91.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC-----CchHhhhCCCCEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVI 93 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~-----~d~~~a~~~aDiVI 93 (258)
||||.|+||+|++|++++..|... +. +|+.+|+.... ..++... ..+..+.+. ..+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 479999999999999999998865 55 89999975421 1112111 112222111 12345678999999
Q ss_pred EcCCCCCC--CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH----HHHHHHHHHh---CCCCCCcEEE
Q 025075 94 IPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV----PIAAEVFKKA---GTYDPKKLLG 164 (258)
Q Consensus 94 i~ag~~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~----~i~t~~~~~~---~~~~~~kviG 164 (258)
.+++.... ...+.......|+.....+++.+++.. ..+|.+|... +.. ..+.+-.... ...++....|
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~-vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~ 150 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSE-VYGMCPDEEFDPEASPLVYGPINKPRWIYA 150 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecce-eeccCCCcCcCccccccccCcCCCccchHH
Confidence 99875321 122334456678888888888888764 3555444321 000 0000000000 0001122344
Q ss_pred EeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 165 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 165 ~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
.+.....+.....++..+++..-++ +.++|.+
T Consensus 151 ~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~ 183 (347)
T PRK11908 151 CSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG 183 (347)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence 4444344444445566677777777 4578864
No 103
>PLN02214 cinnamoyl-CoA reductase
Probab=98.17 E-value=2e-05 Score=71.80 Aligned_cols=170 Identities=15% Similarity=0.034 Sum_probs=97.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH---HHHHhcCCCCCeEEEE----eCCCchHhhhCCCCE
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTGAVVRGF----LGQPQLENALTGMDL 91 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~---~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDi 91 (258)
++++|.|+||+|++|++++..|..+|. +|+.++++..... ...+.... ..+..+ ....++.++++++|+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~ 84 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGK--ERLILCKADLQDYEALKAAIDGCDG 84 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCC--CcEEEEecCcCChHHHHHHHhcCCE
Confidence 346899999999999999999999887 8888887653211 11221110 112211 112346678899999
Q ss_pred EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCc-------HHHHHHHHHHhC--CCCCCcE
Q 025075 92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-------VPIAAEVFKKAG--TYDPKKL 162 (258)
Q Consensus 92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~-------~~i~t~~~~~~~--~~~~~kv 162 (258)
||++|+... ....+.+..|+.....+++.+.+.+.+ .++.+|.-...- ...+++-.+... ...+...
T Consensus 85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~ 160 (342)
T PLN02214 85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNW 160 (342)
T ss_pred EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccccccH
Confidence 999997532 233556788999999999998877544 344343211100 000111000000 0001112
Q ss_pred EEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 163 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 163 iG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
+|.+.....++....++..+++..-++ ..|+|.+
T Consensus 161 Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~ 195 (342)
T PLN02214 161 YCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPP 195 (342)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence 233333344455555666788777777 5688975
No 104
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.17 E-value=2.7e-05 Score=65.83 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=63.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
||+++|+|+ |++|+.++..+...|+ ||.+-.++.++.....-.... ..+. + .+.++|.+.+|+||++.-
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~--~~i~---~-~~~~dA~~~aDVVvLAVP-- 69 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALG--PLIT---G-GSNEDAAALADVVVLAVP-- 69 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhc--cccc---c-CChHHHHhcCCEEEEecc--
Confidence 679999997 9999999999999998 888886665432221111111 1222 2 234689999999999962
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv 140 (258)
+.. +.++.+.+...-.+-++|-.|||.
T Consensus 70 ----------~~a----~~~v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 70 ----------FEA----IPDVLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred ----------HHH----HHhHHHHHHHHhCCeEEEecCCCc
Confidence 122 344444454433366788899995
No 105
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=98.17 E-value=3e-05 Score=70.39 Aligned_cols=156 Identities=13% Similarity=0.028 Sum_probs=87.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhc---CCCCCeEEE----EeCCCchHhhhCC--
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISH---MDTGAVVRG----FLGQPQLENALTG-- 88 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~---~~~~~~v~~----~~~~~d~~~a~~~-- 88 (258)
+||.|+||+|++|++++..|...|. +|+++|++... .....+.. ......+.. +....++.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 3899999999999999999999887 89999986531 11111110 000011211 1111234556664
Q ss_pred CCEEEEcCCCCCCC-C-CchhhHHHHhHHHHHHHHHHhhhhC-CC-cEEEEecC------CCCCcHHHHHHHHHHhCCCC
Q 025075 89 MDLVIIPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCC-PN-ATVNLISN------PVNSTVPIAAEVFKKAGTYD 158 (258)
Q Consensus 89 aDiVIi~ag~~~~~-g-~~r~d~~~~n~~i~~~i~~~i~~~~-p~-a~viv~tN------Pvd~~~~i~t~~~~~~~~~~ 158 (258)
.|+||++|+..... . ......+..|+.-...+++.+.+++ .+ ..++.+|. +.+. + ++ ....++
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~--~-~~----E~~~~~ 151 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI--P-QN----ETTPFY 151 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC--C-CC----CCCCCC
Confidence 59999999864321 1 1123344567777788888888765 22 24444332 1110 0 00 111233
Q ss_pred CCcEEEEeeccHHHHHHHHHHHhCCCC
Q 025075 159 PKKLLGVTMLDVVRANTFVAEVLGLDP 185 (258)
Q Consensus 159 ~~kviG~t~lds~R~~~~la~~l~v~~ 185 (258)
|....|.+.+...++....++..+++.
T Consensus 152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~ 178 (343)
T TIGR01472 152 PRSPYAAAKLYAHWITVNYREAYGLFA 178 (343)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCce
Confidence 455566666666666666677766653
No 106
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=1.8e-05 Score=70.16 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=110.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCC-CCeEEEEeCCCchHhhh--CCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFLGQPQLENAL--TGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~--~~aDiVIi~a 96 (258)
|+|.|+|++|+|||+.+..|++.|+ +++.+|.-.. ...+++-....+ ...+.+ ..-+.+.+ ...|.||..|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEECc
Confidence 6899999999999999999999998 9999998653 222221111111 011111 11123333 3789999988
Q ss_pred CCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe-----cCCCCCcHHHHHHHHHHhCCCCCCcEEEEeecc
Q 025075 97 GVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-----SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD 169 (258)
Q Consensus 97 g~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~-----tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~ld 169 (258)
+...-+ -+.-+.++..|+--...+.+.+.+++.+-+|..- .+|... -++| .....|.+..|-|.|.
T Consensus 76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~---PI~E----~~~~~p~NPYG~sKlm 148 (329)
T COG1087 76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS---PISE----TSPLAPINPYGRSKLM 148 (329)
T ss_pred cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc---ccCC----CCCCCCCCcchhHHHH
Confidence 743211 1234678899999999999999999987666432 355542 1222 2235577889999998
Q ss_pred HHHHHHHHHHHhCCCCCceeEE-EEecC
Q 025075 170 VVRANTFVAEVLGLDPRDVDVP-VVGGH 196 (258)
Q Consensus 170 s~R~~~~la~~l~v~~~~v~~~-v~G~h 196 (258)
+.++.+-+++..+....-++-+ +.|-|
T Consensus 149 ~E~iL~d~~~a~~~~~v~LRYFN~aGA~ 176 (329)
T COG1087 149 SEEILRDAAKANPFKVVILRYFNVAGAC 176 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEEecccccCC
Confidence 9999999999988766666643 77866
No 107
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.17 E-value=2.8e-05 Score=70.69 Aligned_cols=103 Identities=19% Similarity=0.163 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC---CC-eE----EEEeCCCchHhhhCCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---GA-VV----RGFLGQPQLENALTGMD 90 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~---~~-~v----~~~~~~~d~~~a~~~aD 90 (258)
++|||+|||+ |.+|..++..|...|+ +|.++|+++.. ..+.-..... .. .. ..+..+++. ++++++|
T Consensus 1 ~~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D 75 (341)
T PRK08229 1 MMARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATAD 75 (341)
T ss_pred CCceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh-hhccCCC
Confidence 3579999998 9999999999999887 89999985421 1111011000 00 00 011123454 5789999
Q ss_pred EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCC
Q 025075 91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNS 142 (258)
Q Consensus 91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~ 142 (258)
+||++...+ . ..++++.+..+ .++.+++..+|..+.
T Consensus 76 ~vil~vk~~----~------------~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 76 LVLVTVKSA----A------------TADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred EEEEEecCc----c------------hHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 999997321 1 12334455554 466777778998873
No 108
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.15 E-value=2.1e-05 Score=70.97 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhc-----CCCCCeEEEEeCCCchHhhhCCCCE
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-----MDTGAVVRGFLGQPQLENALTGMDL 91 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~-----~~~~~~v~~~~~~~d~~~a~~~aDi 91 (258)
++.+|||+|+|+ |.+|..++..|...|+ +|.+++++... ...... ......+......++. ++...+|+
T Consensus 2 ~~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~ 75 (313)
T PRK06249 2 DSETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYE--AVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDW 75 (313)
T ss_pred CCcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHH--HHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCE
Confidence 456689999998 9999999999999887 89999986521 111110 0000011000111222 35788999
Q ss_pred EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075 92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165 (258)
Q Consensus 92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~ 165 (258)
||++.- ..+ ..+.++.+... .|++.++...|-++. . +.+.+. +|+++|++-
T Consensus 76 vilavK----~~~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~----~-e~l~~~--~~~~~v~~g 127 (313)
T PRK06249 76 VLVGLK----TTA------------NALLAPLIPQVAAPDAKVLLLQNGLGV----E-EQLREI--LPAEHLLGG 127 (313)
T ss_pred EEEEec----CCC------------hHhHHHHHhhhcCCCCEEEEecCCCCc----H-HHHHHH--CCCCcEEEE
Confidence 999962 111 12344444443 478888889999873 1 223332 788887754
No 109
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.14 E-value=1.6e-05 Score=75.83 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=83.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe----CCCchHhhhCC--CCEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL----GQPQLENALTG--MDLV 92 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~--aDiV 92 (258)
++|.|+||+|++|+.+...++..+. .+|+++|+++.+ ....++.+.....++..+. ....++.++++ .|+|
T Consensus 251 K~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~V 329 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIV 329 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceE
Confidence 3799999999999999998887754 699999998852 2223444421112222222 12235678888 9999
Q ss_pred EEcCCCCCCCCC--chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec----CCCC
Q 025075 93 IIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVN 141 (258)
Q Consensus 93 Ii~ag~~~~~g~--~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t----NPvd 141 (258)
+++|..-.-|-. .-.+-...|+--.+++++...+++=+..+++-| ||++
T Consensus 330 fHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtN 384 (588)
T COG1086 330 FHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTN 384 (588)
T ss_pred EEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCch
Confidence 999875444432 335667889999999999999998776776655 5655
No 110
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=98.14 E-value=3.6e-05 Score=69.89 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=97.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE----EEeCCCchHhhhC--CCCEEEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR----GFLGQPQLENALT--GMDLVII 94 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~----~~~~~~d~~~a~~--~aDiVIi 94 (258)
|||.|+||+|++|++++..|...|. ..++.+|.....+....+........+. ++....++.++++ ++|+||.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999988775 2466677543211111111110011111 1111123445565 4899999
Q ss_pred cCCCCCC--CCCchhhHHHHhHHHHHHHHHHhhhhC-------CC-cEEEEecCCCCCcH--------------HHHHHH
Q 025075 95 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPVNSTV--------------PIAAEV 150 (258)
Q Consensus 95 ~ag~~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~-------p~-a~viv~tNPvd~~~--------------~i~t~~ 150 (258)
+|+.... +.....+.+..|+.....+++.+.++. .. ..++.+|-.. +.. +.++
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~~-- 156 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLFT-- 156 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCcc--
Confidence 9986421 112235678889999999999888751 12 2344443211 000 0001
Q ss_pred HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
+...+.|....|.+.....++-..+++..+++...++ ..|+|.+
T Consensus 157 --E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~ 201 (352)
T PRK10084 157 --ETTAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY 201 (352)
T ss_pred --ccCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence 1112344566777766666666667788888777677 4588876
No 111
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.13 E-value=3.2e-05 Score=70.11 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=62.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC------C--CCCeEEEEeCCCchHhhhCCCCE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------D--TGAVVRGFLGQPQLENALTGMDL 91 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~------~--~~~~v~~~~~~~d~~~a~~~aDi 91 (258)
+|||+|||+ |.+|+.++..|...|+ +|.+||+++++.+.+.-.+. . .+..+. .++++.++++++|+
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~---~~~~~~e~~~~aD~ 77 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELY---PTADPEEALAGADF 77 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeE---EeCCHHHHHcCCCE
Confidence 579999998 9999999999998887 89999997643222211110 0 011122 23467778899999
Q ss_pred EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
||++.. +.. ++++.+.+ .|+.+++.++|.++
T Consensus 78 Vi~~v~----~~~------------~~~v~~~l---~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 78 AVVAVP----SKA------------LRETLAGL---PRALGYVSCAKGLA 108 (328)
T ss_pred EEEECc----hHH------------HHHHHHhc---CcCCEEEEEeeccc
Confidence 999862 110 23333333 36667777888643
No 112
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.11 E-value=2.5e-05 Score=71.38 Aligned_cols=71 Identities=23% Similarity=0.396 Sum_probs=48.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEeCCC---ChhHHHHHh--cCCC--------CCeEEEEeCCCch
Q 025075 22 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMDT--------GAVVRGFLGQPQL 82 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~------~~~ei~L~D~~~---~~g~~~dl~--~~~~--------~~~v~~~~~~~d~ 82 (258)
||+|||+ |..|.++|..|...+ +..+|.||.+++ .......+. |... +..+. .++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~---at~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLV---AVPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeE---EECCH
Confidence 6999998 999999999998877 123999999854 122222222 2111 11222 35688
Q ss_pred HhhhCCCCEEEEcC
Q 025075 83 ENALTGMDLVIIPA 96 (258)
Q Consensus 83 ~~a~~~aDiVIi~a 96 (258)
++++++||+||++.
T Consensus 77 ~eal~~ADiIIlAV 90 (342)
T TIGR03376 77 VEAAKGADILVFVI 90 (342)
T ss_pred HHHHhcCCEEEEEC
Confidence 89999999999985
No 113
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=98.11 E-value=3.5e-05 Score=69.73 Aligned_cols=111 Identities=15% Similarity=-0.023 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcC--CCCCeEEEE----eCCCchHhhhC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHM--DTGAVVRGF----LGQPQLENALT 87 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~--~~~~~v~~~----~~~~d~~~a~~ 87 (258)
..+.++|.|+||+|++|++++..|...|. +|+++|++... .....+... .....+..+ ....++.++++
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 80 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLD 80 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHH
Confidence 34457999999999999999999999887 89999875421 111111100 000112111 11123445566
Q ss_pred C--CCEEEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCC
Q 025075 88 G--MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP 129 (258)
Q Consensus 88 ~--aDiVIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p 129 (258)
+ .|+||++|+...... ......+..|+.....+++.+.++..
T Consensus 81 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 81 DIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred HcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 599999998643211 11233456788888888888887764
No 114
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=98.11 E-value=1.3e-05 Score=65.87 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=65.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEEEcCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVIi~ag~ 98 (258)
|+|+||+|++|+.++..|..++. +|.++-+++.+.. + +. .+..+.+ ..++.++++++|.||.++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~--~~----~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D--SP----GVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H--CT----TEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c--cc----ccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999996 9999988764222 1 11 2222222 12457889999999999875
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
+.+ ..+.++.+++.+++.+.. .++.+|
T Consensus 71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hcc-----------cccccccccccccccccc-cceeee
Confidence 433 167778888888887644 444443
No 115
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.11 E-value=3e-05 Score=70.23 Aligned_cols=99 Identities=17% Similarity=0.357 Sum_probs=64.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhc--CC------CCCeEEEEeCCCchHhhh-CCCCE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MD------TGAVVRGFLGQPQLENAL-TGMDL 91 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~--~~------~~~~v~~~~~~~d~~~a~-~~aDi 91 (258)
|||+|||| |.+|+.++..|...|. +|.+|+++++..+.+.-.+ .. .+..++. ++|+.+++ .++|+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~Dl 74 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNATC 74 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCCCE
Confidence 58999998 9999999999998886 8999999764222221111 11 1112222 35666676 58999
Q ss_pred EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhh-h-CCCcEEEEecCCCC
Q 025075 92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVN 141 (258)
Q Consensus 92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~-~-~p~a~viv~tNPvd 141 (258)
||++.- ..-+.++++.+.. + .++..++..+|-.+
T Consensus 75 iiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 75 IILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 999862 1123455555654 3 46777888888764
No 116
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.09 E-value=5.4e-05 Score=71.24 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCC---------eEEEEeCCCchHhhhCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA---------VVRGFLGQPQLENALTGM 89 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~---------~v~~~~~~~d~~~a~~~a 89 (258)
++|||+|||. |+||..++..|+. ++ +|+.||+++.+- .+|.....+. .......+++. +++++|
T Consensus 5 ~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~~v--e~l~~G~~~~~e~~~~~l~~~g~l~~t~~~-~~~~~a 77 (425)
T PRK15182 5 DEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKKRI--LELKNGVDVNLETTEEELREARYLKFTSEI-EKIKEC 77 (425)
T ss_pred CCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHHHH--HHHHCcCCCCCCCCHHHHHhhCCeeEEeCH-HHHcCC
Confidence 4589999997 9999999999877 45 999999987532 2233221100 00011123454 579999
Q ss_pred CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEE-ecCCCCCcHHHHHHHHH
Q 025075 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNL-ISNPVNSTVPIAAEVFK 152 (258)
Q Consensus 90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv-~tNPvd~~~~i~t~~~~ 152 (258)
|++|++.+.|.+... . .++..+....+.|.++.+ ..++|+ .|-|..+.-.++...+.
T Consensus 78 dvvii~Vptp~~~~~-~-----~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 78 NFYIITVPTPINTYK-Q-----PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred CEEEEEcCCCCCCCC-C-----cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence 999999988754321 1 123334444555555543 444443 45666644333333333
No 117
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.06 E-value=4.9e-05 Score=70.05 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=64.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCC---hhHHHHHhc--CC--------CCCeEEEEeCCCch
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISH--MD--------TGAVVRGFLGQPQL 82 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~-----~~ei~L~D~~~~---~g~~~dl~~--~~--------~~~~v~~~~~~~d~ 82 (258)
+||+|||+ |..|+++|..|...+. ..+|.||.++++ +....++.+ .. .+..+. .++|+
T Consensus 12 ~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~---~tsdl 87 (365)
T PTZ00345 12 LKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIV---AVSDL 87 (365)
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceE---EecCH
Confidence 69999998 9999999999998762 138999998874 122333432 21 122333 35688
Q ss_pred HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhh--hC-CCcEEEEecC
Q 025075 83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK--CC-PNATVNLISN 138 (258)
Q Consensus 83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~--~~-p~a~viv~tN 138 (258)
.+++++||+||++.- ...++++++.+.. +- +++++|.++-
T Consensus 88 ~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~aK 130 (365)
T PTZ00345 88 KEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLTK 130 (365)
T ss_pred HHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEeC
Confidence 889999999999851 2234666666665 32 3445555543
No 118
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=98.04 E-value=6.5e-05 Score=67.70 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=69.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHH-HHHhcCC-CCCe-EE-EEeCCCchHhhhC--CCCEEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT-ADISHMD-TGAV-VR-GFLGQPQLENALT--GMDLVI 93 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~-~dl~~~~-~~~~-v~-~~~~~~d~~~a~~--~aDiVI 93 (258)
|||.|+||+|++|++++..|...|. +|+++|+... .... ..+.+.. .... +. .+....++.++++ ++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 6899999999999999999998887 8999986432 1111 1111110 0011 11 1111112334454 689999
Q ss_pred EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
++++..... .....+.+..|+.....+++.+++.+.. .++.+|
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 123 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS 123 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 998754211 1233567788999999999988876533 344444
No 119
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=98.00 E-value=7.1e-05 Score=72.40 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhc-----CC--CCCeEEEE----eCCCchHhh
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISH-----MD--TGAVVRGF----LGQPQLENA 85 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~-----~~--~~~~v~~~----~~~~d~~~a 85 (258)
+.+.|.|+||+|++|..++..|+..|. +|++++++..+... .++.+ .. ....+..+ ....++.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 345799999999999999999998887 89999987653221 11111 00 00112211 111245567
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 86 ~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
+.++|+||+++|........-...+..|......+++.+.+.+-. .||++|
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS 207 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT 207 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 899999999998653321111233556777788888888776543 455444
No 120
>PLN02583 cinnamoyl-CoA reductase
Probab=97.99 E-value=0.00012 Score=65.37 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=70.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH----HHHHhcCCCCCeEEEE----eCCCchHhhhCCCCEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV----TADISHMDTGAVVRGF----LGQPQLENALTGMDLV 92 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~----~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDiV 92 (258)
++|.|+||+|++|++++..|+.+|+ +|++.+++..... ..++... ...+..+ ....++.+++.++|.|
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 4799999999999999999999997 8888877532111 1122110 1112211 1123456789999999
Q ss_pred EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
+.+++.+........+++..|+.....+.+.+.+..--..||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S 127 (297)
T PLN02583 83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS 127 (297)
T ss_pred EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 887654322111234577889999999999887763112444443
No 121
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=97.99 E-value=4.7e-05 Score=66.80 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=68.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP 102 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~~ 102 (258)
|.|+||+|++|++++..|...|. +|+.++++....... ... .+..... .+..++++++|+||++++.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANT--KWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcc--cce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 57999999999999999998887 899999876421110 000 1111111 23356789999999999865432
Q ss_pred C-C---chhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075 103 G-M---TRDDLFNINAGIVRTLCEGIAKCCPN 130 (258)
Q Consensus 103 g-~---~r~d~~~~n~~i~~~i~~~i~~~~p~ 130 (258)
+ . ...++...|+...+.+++.+.+++..
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 2 1 22346677999999999999987643
No 122
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=97.97 E-value=8.8e-05 Score=66.08 Aligned_cols=160 Identities=9% Similarity=0.099 Sum_probs=85.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCc-hHhhh-----CCCCEEEEcC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA 96 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d-~~~a~-----~~aDiVIi~a 96 (258)
|.|+||+|++|++++..|...|. ..+.++|..........+.+. .+.......+ +++.+ .++|+||++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~----~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDL----DIADYMDKEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhh----hhhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence 78999999999999999998885 357778875421111111111 1100000011 12222 3699999999
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC------CCCcHHHHHHHHHHhCCCCCCcEEEEeeccH
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 170 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP------vd~~~~i~t~~~~~~~~~~~~kviG~t~lds 170 (258)
+.+..........+..|+.....+.+.+.+.+- .++..|.. .+. .+ .......|...+|.+....
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~~~~---~~----~E~~~~~p~~~Y~~sK~~~ 147 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTDD---FI----EEREYEKPLNVYGYSKFLF 147 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcCCCC---CC----ccCCCCCCCCHHHHHHHHH
Confidence 754333333445678899999999999887653 34444321 110 00 0001112223344443333
Q ss_pred HHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 171 VRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 171 ~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
.++....++..+++...++ ..++|.+
T Consensus 148 E~~~~~~~~~~~~~~~~lR~~~vyG~~ 174 (308)
T PRK11150 148 DEYVRQILPEANSQICGFRYFNVYGPR 174 (308)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeecCCC
Confidence 3443444444566666666 4578865
No 123
>PLN02778 3,5-epimerase/4-reductase
Probab=97.97 E-value=0.00016 Score=64.67 Aligned_cols=90 Identities=22% Similarity=0.172 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~a 96 (258)
+.|||.|+||+|++|++++..|..+|. +|++...+.. +. ..+..+++ +.|+||++|
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~--------~~------------~~v~~~l~~~~~D~ViH~A 65 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLE--------NR------------ASLEADIDAVKPTHVFNAA 65 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccC--------CH------------HHHHHHHHhcCCCEEEECC
Confidence 447999999999999999999998887 7765432211 10 00112222 689999999
Q ss_pred CCCCCCC-----CchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075 97 GVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 130 (258)
Q Consensus 97 g~~~~~g-----~~r~d~~~~n~~i~~~i~~~i~~~~p~ 130 (258)
+....+. ....+.+..|+.....+++.+++.+..
T Consensus 66 a~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~ 104 (298)
T PLN02778 66 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV 104 (298)
T ss_pred cccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8643222 234567788999999999999887644
No 124
>PRK06194 hypothetical protein; Provisional
Probab=97.96 E-value=0.00046 Score=60.70 Aligned_cols=159 Identities=20% Similarity=0.157 Sum_probs=87.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CC---chHhhhC------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QP---QLENALT------ 87 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~------ 87 (258)
+++|.|+||+|++|++++..|..+|. +|+++|++... ....++.... ..+..+.+ -+ ++++.++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999987 89999987542 2222332211 12221211 11 2333333
Q ss_pred -CCCEEEEcCCCCCCC---CCchh---hHHHHhHH----HHHHHHHHhhhhCCC-----cEEEEecCCCCCcHHHHHHHH
Q 025075 88 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPN-----ATVNLISNPVNSTVPIAAEVF 151 (258)
Q Consensus 88 -~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~-----a~viv~tNPvd~~~~i~t~~~ 151 (258)
..|+||.++|..... ..+.. ..+..|+. ..+.+.+.+.+.+.+ +.++++|.....
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--------- 152 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL--------- 152 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence 479999999874321 11111 23445544 444455556555432 566665543221
Q ss_pred HHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075 152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194 (258)
Q Consensus 152 ~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G 194 (258)
. +.+..-.++.+..-...+...+++.++.....+++..+.
T Consensus 153 --~-~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~ 192 (287)
T PRK06194 153 --L-APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC 192 (287)
T ss_pred --c-CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 1 123333445544444455666777777666666654443
No 125
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.96 E-value=8.2e-05 Score=57.69 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=47.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
||+|+||+|.+|+.++..|...+.++-+.+++.....++.+.-.+.. ....+.... .+ .+.+.++|+||++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence 79999999999999999999887777777787766333332222211 111222211 23 35689999999986
No 126
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.95 E-value=0.00025 Score=70.32 Aligned_cols=175 Identities=14% Similarity=0.037 Sum_probs=95.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhhh--CCCCEE
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TGMDLV 92 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~--~~aDiV 92 (258)
+++||.|+||+|++|++++..|...+.--+|+.+|+.........+........+..+.+ -.| +...+ .++|+|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 457999999999999999999987643238999987431111111111000112222211 112 22222 689999
Q ss_pred EEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC-----CCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075 93 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-----VNSTVPIAAEVFKKAGTYDPKKLLGV 165 (258)
Q Consensus 93 Ii~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP-----vd~~~~i~t~~~~~~~~~~~~kviG~ 165 (258)
|.+|+...... ....++...|+.....+++.+++.+.-..+|.+|.- .... +... ........|....|.
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~-~~~~--~~E~~~~~p~~~Y~~ 161 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDED-ADVG--NHEASQLLPTNPYSA 161 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccc-cccC--ccccCCCCCCCCcHH
Confidence 99998643211 122456678999899999998887632345545431 0000 0000 000001123344555
Q ss_pred eeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 166 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
+.+...++-...++..+++..-++ ..|+|.+
T Consensus 162 sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~ 193 (668)
T PLN02260 162 TKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN 193 (668)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECcccccCcC
Confidence 555555555555666677766667 4588876
No 127
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=97.95 E-value=0.00015 Score=65.19 Aligned_cols=171 Identities=16% Similarity=0.055 Sum_probs=96.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhc-CCCCCeEEEE----eCCCchHhhhCCCCEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISH-MDTGAVVRGF----LGQPQLENALTGMDLVI 93 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~-~~~~~~v~~~----~~~~d~~~a~~~aDiVI 93 (258)
.++|.|+||+|++|++++..|...|. +|++.+++..... ...+.. ......+..+ ....++.++++++|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 35899999999999999999999887 8888877654211 111111 0001122211 11234566788999999
Q ss_pred EcCCCCCCC-C-CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH--------HHHHHHHHHhCCCC-----
Q 025075 94 IPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV--------PIAAEVFKKAGTYD----- 158 (258)
Q Consensus 94 i~ag~~~~~-g-~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~--------~i~t~~~~~~~~~~----- 158 (258)
++||..... . ..-.+.+..|+.....+.+.+.++.....|+++|.-..... ..+++ ....+
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E----~~~~~p~~~~ 158 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDE----TFFTNPSFAE 158 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCc----CCCCchhHhc
Confidence 999853211 1 11234567888888888888877532234554443111000 00011 00011
Q ss_pred -CCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 159 -PKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 159 -~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
+....|.+.+...++...+++..+++..-++ +.++|..
T Consensus 159 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~ 198 (325)
T PLN02989 159 ERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI 198 (325)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence 1234555555555555556677787776677 5688865
No 128
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=97.95 E-value=0.00023 Score=64.91 Aligned_cols=173 Identities=18% Similarity=0.090 Sum_probs=94.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeC----CCchHhhhCCCCEE
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLG----QPQLENALTGMDLV 92 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiV 92 (258)
..|||.|+||+|++|++++..|...|. +|++.+++...... .++.. ...+..+.+ ..++.+++++.|+|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 346999999999999999999998887 88888876532211 11211 112222211 12345667889999
Q ss_pred EEcCCCCCCC---C-Cchhh-----HHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH--------HHHHHHH----
Q 025075 93 IIPAGVPRKP---G-MTRDD-----LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV--------PIAAEVF---- 151 (258)
Q Consensus 93 Ii~ag~~~~~---g-~~r~d-----~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~--------~i~t~~~---- 151 (258)
|++|+..... . .+-.+ .+..|+.....+++.+.++..-..++++|.-.-... ..+.+-.
T Consensus 84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~ 163 (353)
T PLN02896 84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI 163 (353)
T ss_pred EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence 9999864211 1 11122 233345667778888776532234554443110000 0001100
Q ss_pred H-HhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 152 K-KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 152 ~-~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
. .....++.-..|.+.+...++....++..+++..-++ ..|+|.+
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~ 210 (353)
T PLN02896 164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF 210 (353)
T ss_pred HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence 0 0000112225566666666666667777788777777 4588875
No 129
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.94 E-value=0.00015 Score=67.06 Aligned_cols=149 Identities=21% Similarity=0.162 Sum_probs=84.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
||||.|||| |+||+.++..|++.+- .+|.+-|+..++ ..+.+..+.......-+......+.+.+++.|+||.++..
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 579999998 9999999999999885 599999998652 2222222211111111112223567889999999999742
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE--e----eccHHH
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV--T----MLDVVR 172 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~--t----~lds~R 172 (258)
.. + ..+++.+.+.+- -++-.|+-.+.. +-+-+.+++++ +.++ | -++. =
T Consensus 79 ~~------------~----~~i~ka~i~~gv--~yvDts~~~~~~-~~~~~~a~~Ag------it~v~~~G~dPGi~n-v 132 (389)
T COG1748 79 FV------------D----LTILKACIKTGV--DYVDTSYYEEPP-WKLDEEAKKAG------ITAVLGCGFDPGITN-V 132 (389)
T ss_pred hh------------h----HHHHHHHHHhCC--CEEEcccCCchh-hhhhHHHHHcC------eEEEcccCcCcchHH-H
Confidence 21 1 234444444332 355566655542 33344444433 3333 1 2332 2
Q ss_pred HHHHHHHHhCCCCCceeEEE--EecC
Q 025075 173 ANTFVAEVLGLDPRDVDVPV--VGGH 196 (258)
Q Consensus 173 ~~~~la~~l~v~~~~v~~~v--~G~h 196 (258)
+-...++++.-..++++.++ +|+|
T Consensus 133 ~a~~a~~~~~~~i~si~iy~g~~g~~ 158 (389)
T COG1748 133 LAAYAAKELFDEIESIDIYVGGLGEH 158 (389)
T ss_pred HHHHHHHHhhccccEEEEEEecCCCC
Confidence 34445555554666777664 4566
No 130
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.94 E-value=8.6e-05 Score=65.16 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
||||+|||+ |.+|..++..|...+. ..++.++|++++.... +.+. . .+.. ..+..+.++++|+||++..
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~--~~~~-~--g~~~---~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRAA--LAEE-Y--GVRA---ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHH--HHHh-c--CCee---cCChHHHHhcCCEEEEEcC-
Confidence 679999998 9999999999887762 1379999987643221 2221 0 1111 2345567899999999861
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
+ ..++++++.+..+. +..|+.++|.+.
T Consensus 72 ---~------------~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---P------------QVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---H------------HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 1 12344555554443 457777888765
No 131
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=97.93 E-value=0.00019 Score=64.36 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=66.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcC-CCCCeEEEEe----CCCchHhhhCCCCEEEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVII 94 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~-~~~~~v~~~~----~~~d~~~a~~~aDiVIi 94 (258)
++|.|+||+|++|++++..|...|. +|++..++... .....+... .....+..+. ...++.++++++|+||+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 5899999999999999999998887 78766555432 111222111 0111222211 12345677889999999
Q ss_pred cCCCCCCC-CCchhhHHHHhHHHHHHHHHHhhhh
Q 025075 95 PAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKC 127 (258)
Q Consensus 95 ~ag~~~~~-g~~r~d~~~~n~~i~~~i~~~i~~~ 127 (258)
+|+..... .....+++..|+.....+++.+.+.
T Consensus 84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 99753211 1122345677898888898888765
No 132
>PRK07680 late competence protein ComER; Validated
Probab=97.87 E-value=0.00017 Score=63.78 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=63.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
|||+|||+ |.+|.+++..|...+.+ .+|.++|++.+.... +.+.. . .+.. ..+..+.++++|+||++.
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~--~~~~~-~-g~~~---~~~~~~~~~~aDiVilav-- 70 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYH--IKERY-P-GIHV---AKTIEEVISQSDLIFICV-- 70 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHH--HHHHc-C-CeEE---ECCHHHHHHhCCEEEEec--
Confidence 58999998 99999999998887742 479999987643222 22211 1 1221 234567789999999996
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 141 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd 141 (258)
+|. .+.++++.+..+ .++.+++.++|++.
T Consensus 71 --~p~------------~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 71 --KPL------------DIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred --CHH------------HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 111 134444555544 35678888999876
No 133
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.87 E-value=0.00012 Score=65.19 Aligned_cols=86 Identities=21% Similarity=0.240 Sum_probs=57.5
Q ss_pred HHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchH
Q 025075 6 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLE 83 (258)
Q Consensus 6 ~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~ 83 (258)
=|.+..++.....+..||+|+|+ |.+|.++++.|...|. .+|.++|++.++++ +.++.+... ..... ...++.
T Consensus 113 G~~~~l~~~~~~~~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~--~~~~~-~~~~~~ 187 (284)
T PRK12549 113 GFAESFRRGLPDASLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP--AARAT-AGSDLA 187 (284)
T ss_pred HHHHHHHhhccCccCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC--CeEEE-eccchH
Confidence 36666655432334468999998 9999999999998885 58999999876433 334433221 12211 123445
Q ss_pred hhhCCCCEEEEcC
Q 025075 84 NALTGMDLVIIPA 96 (258)
Q Consensus 84 ~a~~~aDiVIi~a 96 (258)
+.++++|+||.+.
T Consensus 188 ~~~~~aDiVInaT 200 (284)
T PRK12549 188 AALAAADGLVHAT 200 (284)
T ss_pred hhhCCCCEEEECC
Confidence 6789999999983
No 134
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.87 E-value=0.00042 Score=61.44 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
|+||+|||+ |.+|.+++..|...+.. .+|.+++++... ....+... .. .+.. +.+..+.++++|+||++..
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~-~~-~~~~---~~~~~e~~~~aDvVilavp 73 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK-YP-TVEL---ADNEAEIFTKCDHSFICVP 73 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH-cC-CeEE---eCCHHHHHhhCCEEEEecC
Confidence 469999998 99999999999887732 489999986531 11122211 11 1221 2355677899999999862
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN 141 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd 141 (258)
| ..+.++++.+..+- ++..++.+.|-++
T Consensus 74 ----p------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~ 102 (277)
T PRK06928 74 ----P------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS 102 (277)
T ss_pred ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 12445566665543 4567887888877
No 135
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=97.85 E-value=8.6e-05 Score=66.31 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=64.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV 98 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ag~ 98 (258)
|||.|+||+|++|++++..|...| +|+.+|+.... ...|+.+ ...+.+.++ +.|+||++|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~-~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHSTD-YCGDFSN------------PEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEecccccc-ccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence 589999999999999999988877 47777764310 0011111 112345565 58999999875
Q ss_pred CCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 99 ~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
.... ..........|+.....+++.+.+.+. .++.+|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S 103 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS 103 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence 3211 112233456799999999999988753 444443
No 136
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.84 E-value=0.0004 Score=65.64 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=47.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|||+|||+.|.+|..++..|...|+ +|.++|+++.... ++.... .+. .+.++.+++++||+||++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~--~~a~~~---gv~---~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGK--EVAKEL---GVE---YANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHH--HHHHHc---CCe---eccCHHHHhccCCEEEEec
Confidence 5899998559999999999998887 8999998764321 111110 111 1345667899999999986
No 137
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.84 E-value=0.00014 Score=64.48 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=45.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|||+|||. |.+|.+++..|...|+ +|.+||+++... .+.+. . .+. ..+++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---g---~~~--~~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---G---LVD--EASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---C---Ccc--cccCCH-hHhcCCCEEEEcC
Confidence 58999997 9999999999998887 899999876421 12111 1 011 112343 5689999999996
No 138
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.83 E-value=0.0002 Score=64.15 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=60.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
|||+|||. |.+|.+++..|...|+ +|.+||+++++... +...... . .....++.+.++++|+||++..
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~~~~--l~~~g~~-~---~~s~~~~~~~~~~~dvIi~~vp--- 68 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDAVKA--MKEDRTT-G---VANLRELSQRLSAPRVVWVMVP--- 68 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHHHHH--HHHcCCc-c---cCCHHHHHhhcCCCCEEEEEcC---
Confidence 58999998 9999999999999887 89999998753222 2221110 0 1111233345678999999852
Q ss_pred CCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCC
Q 025075 101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV 140 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv 140 (258)
++ .++++++.+.... |+.+++..||..
T Consensus 69 -~~------------~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 69 -HG------------IVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred -ch------------HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 11 2344445555543 566777777753
No 139
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.83 E-value=0.00013 Score=67.63 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.++||+|||+.|.+|.+++..|...|+ +|.+||++.. .+.++++++||+||++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence 447999999459999999999999887 8999997420 12356789999999996
No 140
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.83 E-value=0.00024 Score=66.05 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=69.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh----HHHHHhcCCCCCeEE--EEeCCCchHhhhC---
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTGAVVR--GFLGQPQLENALT--- 87 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g----~~~dl~~~~~~~~v~--~~~~~~d~~~a~~--- 87 (258)
..+++||.|+||+|++|++++..|..+|. +|++++++.... ...++........+. ++....++.++++
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 134 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEG 134 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhC
Confidence 34557999999999999999999998887 899999875311 011111110111111 1111223555566
Q ss_pred -CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 88 -GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 88 -~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
++|+||.+++.+... ..+....|......+++.+++.+-. .++.+|
T Consensus 135 ~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS 181 (390)
T PLN02657 135 DPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS 181 (390)
T ss_pred CCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 599999988743211 1233456777777888888776543 344444
No 141
>PLN02240 UDP-glucose 4-epimerase
Probab=97.80 E-value=0.0003 Score=63.70 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hh---HHHHHhcCCCCCeEEEE----eCCCchHhhhC--
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTGAVVRGF----LGQPQLENALT-- 87 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g---~~~dl~~~~~~~~v~~~----~~~~d~~~a~~-- 87 (258)
+++||.|+||+|++|++++..|...|. +|+++|+... .. ...++.... ...+..+ ....++.++++
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~l~~~~~~~ 80 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDL-GDNLVFHKVDLRDKEALEKVFAST 80 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhccc-CccceEEecCcCCHHHHHHHHHhC
Confidence 446999999999999999999998886 8999986432 11 111111100 0111111 11123334444
Q ss_pred CCCEEEEcCCCCCC-CC-CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 88 GMDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 88 ~aDiVIi~ag~~~~-~g-~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
++|+||++++.... .. ....+.+..|+.....+++.+.+.+.. .++.+|
T Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 131 (352)
T PLN02240 81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSS 131 (352)
T ss_pred CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence 68999999886421 11 233557788999899999888776533 344444
No 142
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.79 E-value=0.00025 Score=63.69 Aligned_cols=70 Identities=24% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.+||+|||+ |.+|.+++..|...|...+|.+||++++.... +..... ... . ..++++++++||+||++..
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~--a~~~g~--~~~-~--~~~~~~~~~~aDvViiavp 75 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRAR--ARELGL--GDR-V--TTSAAEAVKGADLVILCVP 75 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHH--HHhCCC--Cce-e--cCCHHHHhcCCCEEEECCC
Confidence 368999997 99999999999888765589999997642111 111111 111 1 2345678899999999973
No 143
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.79 E-value=0.00018 Score=63.05 Aligned_cols=95 Identities=15% Similarity=0.253 Sum_probs=61.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-eCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
|||++||. |.+|.+++..|...++ ..+|+.+ |+++++.. .+... .+.. ..+..++++++|+||++.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~--~~~~~----g~~~---~~~~~e~~~~aDvVil~v- 69 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPARRD--VFQSL----GVKT---AASNTEVVKSSDVIILAV- 69 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH--HHHHc----CCEE---eCChHHHHhcCCEEEEEE-
Confidence 68999997 9999999999988775 3478888 77654322 22221 1221 234567789999999997
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 141 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd 141 (258)
+|. .++++.+.+..+ .|+.++|..++...
T Consensus 70 ---~~~------------~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 70 ---KPQ------------VVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred ---CcH------------HHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 121 133444455444 35666776666665
No 144
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.78 E-value=0.00018 Score=65.86 Aligned_cols=110 Identities=21% Similarity=0.242 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEE----EeCCCchHhhhCCCCEEE
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRG----FLGQPQLENALTGMDLVI 93 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aDiVI 93 (258)
++.++.|+||+|++|.+++..|.+.+...+|.++|..... ....|.... ....+.. +....++..+++++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 4568999999999999999999988866699999987641 111111110 0112221 12234567889999 666
Q ss_pred EcCCC--CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075 94 IPAGV--PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130 (258)
Q Consensus 94 i~ag~--~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~ 130 (258)
+++.. +......|.....-|++-.+.+.+.+.+.+-+
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~ 119 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK 119 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence 65432 22222236666778999999999999987643
No 145
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.78 E-value=0.00023 Score=59.08 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=64.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
|||+||||+|.+|+.++..+..+|+ |++.+-+++.+-.+. .... ..-.++...+.+.+++.|-|+||.+.|.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~~--i~q~Difd~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGVT--ILQKDIFDLTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--ccce--eecccccChhhhHhhhcCCceEEEeccCCC
Confidence 7999999999999999999999999 999998876532110 1100 011111112334578999999999987553
Q ss_pred CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075 101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
++.. ..-.+-...+...++... ...++++..
T Consensus 75 -~~~~-----~~~~k~~~~li~~l~~ag-v~RllVVGG 105 (211)
T COG2910 75 -SDND-----ELHSKSIEALIEALKGAG-VPRLLVVGG 105 (211)
T ss_pred -CChh-----HHHHHHHHHHHHHHhhcC-CeeEEEEcC
Confidence 2221 111233455555555433 456776754
No 146
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.78 E-value=5.5e-05 Score=64.14 Aligned_cols=165 Identities=17% Similarity=0.127 Sum_probs=95.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE--EEeCCCchHhhhCCC--CEEEEcCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR--GFLGQPQLENALTGM--DLVIIPAGV 98 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~--~~~~~~d~~~a~~~a--DiVIi~ag~ 98 (258)
|.|+||+|++|++++..|..+|. +++.+.............. .. ... .+....++.+.+++. |.||.+++.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~-~~--~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~ 75 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL-NV--EFVIGDLTDKEQLEKLLEKANIDVVIHLAAF 75 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT-TE--EEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc-eE--EEEEeeccccccccccccccCceEEEEeecc
Confidence 78999999999999999999987 6555555443221111111 00 110 011122455677777 999999976
Q ss_pred CC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHH--HHHHHhCCCCCCcEEEEeeccHHHHH
Q 025075 99 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA--EVFKKAGTYDPKKLLGVTMLDVVRAN 174 (258)
Q Consensus 99 ~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t--~~~~~~~~~~~~kviG~t~lds~R~~ 174 (258)
.. .......+....|+...+.+.+.+.+.+. ..++.++. ..+ +-.. .-+.....+.+....|.+.....++.
T Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~--y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~ 151 (236)
T PF01370_consen 76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASV--YGDPDGEPIDEDSPINPLSPYGASKRAAEELL 151 (236)
T ss_dssp SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGG--GTSSSSSSBETTSGCCHSSHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccc-ccc--cccccccccccccccccccccccccccccccc
Confidence 42 11124456788899999999999999877 34444443 210 0000 00000000111122333444445566
Q ss_pred HHHHHHhCCCCCcee-EEEEecC
Q 025075 175 TFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 175 ~~la~~l~v~~~~v~-~~v~G~h 196 (258)
..++++.+++...++ ..++|.+
T Consensus 152 ~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 152 RDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHHHHTSEEEEEEESEEESTT
T ss_pred ccccccccccccccccccccccc
Confidence 666777788888888 4688877
No 147
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.77 E-value=0.0003 Score=62.34 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+.|||+|||+ |.+|.+++..|...+. ..+|..+|++..+ ...++... + .+.. +.+..+.+++||+||++.
T Consensus 2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~-~~~~l~~~-~--g~~~---~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNET-RLQELHQK-Y--GVKG---THNKKELLTDANILFLAM 73 (279)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCHH-HHHHHHHh-c--CceE---eCCHHHHHhcCCEEEEEe
Confidence 4579999998 9999999999988762 2488999875421 12222221 1 1221 234567789999999996
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 141 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd 141 (258)
+|.. +.++++.+..+ .++.++|.+.+.+.
T Consensus 74 ----~p~~------------~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 74 ----KPKD------------VAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred ----CHHH------------HHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 2221 22333444443 35667777667665
No 148
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.77 E-value=0.00026 Score=65.10 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=47.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+||+|||. |.+|.+++..|...|+ ++.++|.+........-..... .. ..++++.+++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~--~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---ID--ELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Cc--ccccCHHHHhcCCCEEEEeC
Confidence 37999998 9999999999999887 7888998775322111111111 11 11346678899999999996
No 149
>PLN02256 arogenate dehydrogenase
Probab=97.76 E-value=0.0008 Score=60.60 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=48.2
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh-CCCCEEE
Q 025075 15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVI 93 (258)
Q Consensus 15 ~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVI 93 (258)
.++.+++||+|||+ |.+|..++..|...|. +|..+|.+.....+.++ .+.. ..+.++.+ .++|+||
T Consensus 31 ~~~~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~-------gv~~---~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 31 LEKSRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL-------GVSF---FRDPDDFCEEHPDVVL 97 (304)
T ss_pred hccCCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc-------CCee---eCCHHHHhhCCCCEEE
Confidence 34667789999997 9999999999988775 89999987532112111 1111 23455555 4799999
Q ss_pred EcC
Q 025075 94 IPA 96 (258)
Q Consensus 94 i~a 96 (258)
++.
T Consensus 98 lav 100 (304)
T PLN02256 98 LCT 100 (304)
T ss_pred Eec
Confidence 986
No 150
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=97.76 E-value=0.00017 Score=63.45 Aligned_cols=95 Identities=23% Similarity=0.305 Sum_probs=66.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC--CEEEEcCCCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP 99 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a--DiVIi~ag~~ 99 (258)
||.|+||+|++|++++..|...|. +|+++++.. .|+.+ ..++.++++++ |+||.+++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999998887 899887641 12221 12345667766 9999999754
Q ss_pred CCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 100 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 100 ~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
.... ......+..|+.....+++.+.+... .++.+|
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 3221 22345677888889999988877653 344444
No 151
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.76 E-value=0.00042 Score=68.26 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=67.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C--------CchHhhhCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--------PQLENALTG 88 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~--~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~--------~d~~~a~~~ 88 (258)
|||.|+||+|++|++++..|.. .+. +|.+++++.......++........+..+.+ + .++ +.+++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence 5899999999999999999884 554 8999998653222222211100011221111 0 112 23489
Q ss_pred CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcE
Q 025075 89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 132 (258)
Q Consensus 89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~ 132 (258)
+|+||++|+.... .....+....|+.-.+.+++.+.+...+.+
T Consensus 78 ~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~ 120 (657)
T PRK07201 78 IDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAATF 120 (657)
T ss_pred CCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCCeE
Confidence 9999999975322 223345667899999999998887653333
No 152
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.76 E-value=0.00058 Score=59.03 Aligned_cols=98 Identities=10% Similarity=0.153 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCC-CChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVV-NTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~-~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
+.+||+|||+ |.+|.+++..|...+. ..++..++++ .++. .++.+.. .+.. +.|+++.++++|+||++
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~---~~~~---~~~~~~~~~~~DiViia 73 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKL--DQLQARY---NVST---TTDWKQHVTSVDTIVLA 73 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHH--HHHHHHc---CcEE---eCChHHHHhcCCEEEEe
Confidence 3579999998 9999999998877652 3457778764 2222 2222211 1221 24567788999999998
Q ss_pred CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
.. +. ..+++++.+..+-++.+|+.++..++
T Consensus 74 vp----~~------------~~~~v~~~l~~~~~~~~vis~~~gi~ 103 (245)
T PRK07634 74 MP----PS------------AHEELLAELSPLLSNQLVVTVAAGIG 103 (245)
T ss_pred cC----HH------------HHHHHHHHHHhhccCCEEEEECCCCC
Confidence 52 11 12334444443323446776777666
No 153
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.73 E-value=0.00017 Score=56.60 Aligned_cols=101 Identities=24% Similarity=0.268 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
..+||+|||+ |.||.+++..|...|+ +|.-+-... ......+.+.... .. ..++.+.++++|++|++.
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~~~--~~----~~~~~~~~~~aDlv~iav-- 76 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFIGA--GA----ILDLEEILRDADLVFIAV-- 76 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC--TT-----------TTGGGCC-SEEEE-S--
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccccc--cc----ccccccccccCCEEEEEe--
Confidence 3479999998 9999999999999997 666553322 1122223332111 11 123457899999999996
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhh--C-CCcEEEEec--CCCCCcHH
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLIS--NPVNSTVP 145 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~--~-p~a~viv~t--NPvd~~~~ 145 (258)
|+. .+.++++.|.++ . |+-+|+=.| -++++|.+
T Consensus 77 ---pDd-----------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p 114 (127)
T PF10727_consen 77 ---PDD-----------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP 114 (127)
T ss_dssp ----CC-----------HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH
T ss_pred ---chH-----------HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh
Confidence 221 256788888876 2 444444343 35665544
No 154
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.73 E-value=0.00025 Score=62.79 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=61.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.+||+|||+ |.+|++++..|...++ ..+|..+|++++.. ..+.+.. .+.. .++..+.+++||+||++.
T Consensus 2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~--~~l~~~~---g~~~---~~~~~e~~~~aDiIiLav- 71 (272)
T PRK12491 2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNL--KNASDKY---GITI---TTNNNEVANSADILILSI- 71 (272)
T ss_pred CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHHH--HHHHHhc---CcEE---eCCcHHHHhhCCEEEEEe-
Confidence 358999998 9999999999988875 34799999875432 2222111 1221 134456789999999997
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 141 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd 141 (258)
+|.. +.++.+.+..+ .++.+++-+.-.++
T Consensus 72 ---kP~~------------~~~vl~~l~~~~~~~~lvISi~AGi~ 101 (272)
T PRK12491 72 ---KPDL------------YSSVINQIKDQIKNDVIVVTIAAGKS 101 (272)
T ss_pred ---ChHH------------HHHHHHHHHHhhcCCcEEEEeCCCCc
Confidence 3321 23344444443 35567776666665
No 155
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.72 E-value=0.00029 Score=61.12 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC---CchHhhh-CCCCEE
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ---PQLENAL-TGMDLV 92 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~---~d~~~a~-~~aDiV 92 (258)
-.+++||.|+||+|++|+.++..|...|. +|+.+.++....... +.. .....+.....+ .++.+.+ .++|+|
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~-~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ-DPSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc-CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 34567999999999999999999988887 788877665322111 111 001111111111 2344566 689999
Q ss_pred EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe
Q 025075 93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136 (258)
Q Consensus 93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~ 136 (258)
|+++|.....+. .+....|..-...+++.+.+.... .++.+
T Consensus 90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~i 130 (251)
T PLN00141 90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILV 130 (251)
T ss_pred EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence 998875422111 111233444456667777665543 34433
No 156
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.71 E-value=0.00039 Score=60.26 Aligned_cols=118 Identities=22% Similarity=0.250 Sum_probs=65.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhC--------CC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALT--------GM 89 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~--------~a 89 (258)
|+++.|+||+|.+|..++..|+..|. +|+++|++...... .++.........-++....++.+.++ ..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 34799999999999999999999887 89999987642211 11111111000001111112233332 45
Q ss_pred CEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhh---hCCCcEEEEecCC
Q 025075 90 DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP 139 (258)
Q Consensus 90 DiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~---~~p~a~viv~tNP 139 (258)
|+||.++|...... .+ -...+..|+.-...+.+.+.+ ..+.+.+++++..
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~ 137 (260)
T PRK08267 79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA 137 (260)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 99999998753221 11 223456666644445444432 2344566666543
No 157
>PRK05865 hypothetical protein; Provisional
Probab=97.71 E-value=0.00035 Score=70.81 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=69.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
|||.|+||+|++|++++..|...|+ +|+.+|++.... +. .... .+. ++....++.++++++|+||++|+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~-~~v~-~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WP-SSAD-FIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----cc-cCce-EEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999998887 899999764211 10 0110 111 1111234566789999999998643
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv 140 (258)
. + ....|+.....+++.+.+.+.. .++.+|.+.
T Consensus 73 ~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 73 G-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred c-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 2 1 3466777778888888776533 555566654
No 158
>PRK08643 acetoin reductase; Validated
Probab=97.69 E-value=0.0034 Score=54.15 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=65.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------T 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~ 87 (258)
+++.|+||+|.+|.+++..|+..|. +|++.|++.+.. ...++.+... .+..+. .-+| +.+.+ .
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDGG--KAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999887 899999876421 1223332111 111111 0111 12222 3
Q ss_pred CCCEEEEcCCCCCC-CC-C-ch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCC
Q 025075 88 GMDLVIIPAGVPRK-PG-M-TR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV 140 (258)
Q Consensus 88 ~aDiVIi~ag~~~~-~g-~-~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPv 140 (258)
+.|+||+++|.... +- . +. ...+..|+.- .+.+.+.+.+..+++.++++|...
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~ 141 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQA 141 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccc
Confidence 68999999986432 11 1 11 1234445543 344445554444556777776543
No 159
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00044 Score=60.97 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=67.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
++||++||+ |.+|++++..|...+. ..+|...|+++++.. ++... ++... ++|..++.+.+|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~-~g~~~-----~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAE-YGVVT-----TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHH-cCCcc-----cCcHHHHHhhCCEEEEEe-
Confidence 479999998 9999999999998883 258888888765332 23322 11111 345568899999999997
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
||- .+.++++.++...++-+||.+.=.+.
T Consensus 71 ---KPq------------~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KPQ------------DLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---ChH------------hHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 552 24667777776445667777776666
No 160
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.67 E-value=0.00043 Score=55.24 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=72.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC-----CCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~-----~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
|+|+|+ |.+|..++..|.+.+. +|.++++.. ....+.-... .....+.......+..+..+.+|+||+|.-
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789998 9999999999998887 899999865 2222111111 100111111111121246789999999962
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE-Eee
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTM 167 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG-~t~ 167 (258)
..+ ..+.++.++.+. |++.++.+-|=++. . +.+.+. +|+.++++ ++.
T Consensus 77 ----a~~------------~~~~l~~l~~~~~~~t~iv~~qNG~g~----~-~~l~~~--~~~~~v~~g~~~ 125 (151)
T PF02558_consen 77 ----AYQ------------LEQALQSLKPYLDPNTTIVSLQNGMGN----E-EVLAEY--FPRPRVLGGVTT 125 (151)
T ss_dssp ----GGG------------HHHHHHHHCTGEETTEEEEEESSSSSH----H-HHHHCH--STGSGEEEEEEE
T ss_pred ----ccc------------hHHHHHHHhhccCCCcEEEEEeCCCCc----H-HHHHHH--cCCCcEEEEEEe
Confidence 211 245666677775 67788889999883 2 333333 66778874 444
No 161
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.67 E-value=0.00064 Score=60.49 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=49.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
+||++||. |.+|+.++..|...|+ ++..||+++++.. ..+..... .. ..++.++.+++|+||.+..
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka~-~~~~~~Ga--~~-----a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKAA-ELLAAAGA--TV-----AASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhhh-HHHHHcCC--cc-----cCCHHHHHHhCCEEEEecC
Confidence 48999997 9999999999999998 9999999876532 22222111 11 1344689999999999863
No 162
>PLN02686 cinnamoyl-CoA reductase
Probab=97.65 E-value=0.00033 Score=64.54 Aligned_cols=177 Identities=13% Similarity=0.082 Sum_probs=94.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcC---C-CCCeEEEE----eCCCchHhhhC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM---D-TGAVVRGF----LGQPQLENALT 87 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~---~-~~~~v~~~----~~~~d~~~a~~ 87 (258)
..++++|.|+||+|++|++++..|+..|. +|+++..+.... ...++... . ....+..+ ....++.++++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 35567899999999999999999999987 887766544321 11122100 0 00012211 11223566788
Q ss_pred CCCEEEEcCCCCCCCCC--chhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCC-CCc--------HHHHHHHHH--H
Q 025075 88 GMDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV-NST--------VPIAAEVFK--K 153 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g~--~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv-d~~--------~~i~t~~~~--~ 153 (258)
++|.||.+++.....+. ....+...|+.-...+++.+.+. +.+ .+|.+|... ... -.++++-.+ .
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~ 206 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE 206 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence 99999998865322221 12344566888888888888775 333 344333311 000 000100000 0
Q ss_pred hCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075 154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 154 ~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
....++...+|.+.+...++-..+++..|++..-++ +.|+|..
T Consensus 207 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~ 250 (367)
T PLN02686 207 SFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG 250 (367)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence 000011112334444445555555666777777777 5688875
No 163
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.65 E-value=0.00089 Score=56.67 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~ 55 (258)
+..||+|+|+ |.+|+.++..|+..|+ ++|+|+|.+
T Consensus 20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 3458999998 9999999999999986 689999998
No 164
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.65 E-value=0.00034 Score=55.97 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=57.8
Q ss_pred hHHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCch
Q 025075 5 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQL 82 (258)
Q Consensus 5 ~~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~ 82 (258)
.=|.++.++..-..+.++|+|+|+ |.+|..++..|...+ ..++.++|++.++... .++.... .... ..++
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~ 75 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDL 75 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecch
Confidence 346777776543355679999998 999999999998876 3589999997653221 1222110 0011 1244
Q ss_pred HhhhCCCCEEEEcCCCC
Q 025075 83 ENALTGMDLVIIPAGVP 99 (258)
Q Consensus 83 ~~a~~~aDiVIi~ag~~ 99 (258)
.+.++++|+||++...+
T Consensus 76 ~~~~~~~Dvvi~~~~~~ 92 (155)
T cd01065 76 EELLAEADLIINTTPVG 92 (155)
T ss_pred hhccccCCEEEeCcCCC
Confidence 56689999999997544
No 165
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.65 E-value=0.00057 Score=60.20 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=74.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEE----eCCCchHhhh---
Q 025075 16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF----LGQPQLENAL--- 86 (258)
Q Consensus 16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~----~~~~d~~~a~--- 86 (258)
++++++.+.|+|||+.+|..++..|+.+|. +|+|+.++++ ...+.++.+.. ...+..+ ....+++...
T Consensus 2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 2 GPMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHH
Confidence 345667899999999999999999999998 9999999876 33444555432 1112111 1122222111
Q ss_pred ----CCCCEEEEcCCCCCCCC------CchhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075 87 ----TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 87 ----~~aDiVIi~ag~~~~~g------~~r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN 138 (258)
-..|+.|..||...... .+-.+++.-|+--+ +.+.+.+.+.+ .+.||+++.
T Consensus 79 ~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S 143 (265)
T COG0300 79 KERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGS 143 (265)
T ss_pred HhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 26999999998753221 22345667776544 45555555543 466777653
No 166
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.64 E-value=0.00027 Score=62.10 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..|||+|||+ |.+|++++..|...+.. .+++.+|++... + .... ..+..+.++++|+||++.
T Consensus 2 ~~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav 65 (260)
T PTZ00431 2 ENIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV 65 (260)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe
Confidence 3479999998 99999999999887643 358888876431 0 0111 134456788999999985
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
+|. .+.++++.+..+-++..+|.+.+-++
T Consensus 66 ----kp~------------~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 66 ----KPD------------LAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred ----CHH------------HHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 222 13445555554333345666777766
No 167
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.64 E-value=0.00052 Score=60.92 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=66.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh----CCCCEEEEcCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL----TGMDLVIIPAGV 98 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~----~~aDiVIi~ag~ 98 (258)
|.|+||+|++|++++..|...|. .+|+++|..........+.... ..........++... .++|+||++|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLV---IADYIDKEDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhhee---eeccCcchhHHHHHHhhccCCCCEEEECccc
Confidence 57999999999999999998884 3688888654321111111100 000011111122222 479999999986
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
+.....+..+.+..|+.....+++.+.+... .++.+|
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 4322233445677899999999998887653 344444
No 168
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.63 E-value=0.0019 Score=55.75 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+.+++.|+||+|.+|+.++..|..+|. +|++++++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~ 46 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEA 46 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 3446999999999999999999999887 8999998764
No 169
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.63 E-value=0.00041 Score=61.82 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+|||+|||. |.+|..++..|...|+ +|..||+++..... +.... .. ..+++++.+++||+||++.
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~~--~~~~g----~~---~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAVAE--VIAAG----AE---TASTAKAVAEQCDVIITML 66 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH--HHHCC----Ce---ecCCHHHHHhcCCEEEEeC
Confidence 469999997 9999999999998887 89999987643221 22111 11 1245678889999999986
No 170
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.62 E-value=0.0002 Score=63.22 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|...+||+|+||+||||++++-.|+..|+ +|...|..... ....++|....+....+. ..-....+..+|-|+..|
T Consensus 24 p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ftg-~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLA 99 (350)
T KOG1429|consen 24 PSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFTG-RKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLA 99 (350)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccccc-chhhcchhccCcceeEEE-eechhHHHHHhhhhhhhc
Confidence 66678999999999999999999999996 99999976542 122233333222222111 111245789999999987
Q ss_pred CCC
Q 025075 97 GVP 99 (258)
Q Consensus 97 g~~ 99 (258)
...
T Consensus 100 apa 102 (350)
T KOG1429|consen 100 APA 102 (350)
T ss_pred cCC
Confidence 543
No 171
>PRK06924 short chain dehydrogenase; Provisional
Probab=97.61 E-value=0.00072 Score=58.11 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=30.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
++|.|+||+|.+|+.++..|+.+|. +|++.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 4799999999999999999999887 899999875
No 172
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.61 E-value=0.0017 Score=56.94 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhh-------CC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENAL-------TG 88 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~~ 88 (258)
+++|.|+||+|.+|.+++..|+..|. +|++.+++.+... ++..... ..+..+. ...++.+.+ ..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~--~l~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAARA--DFEALHP-DRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHHH--HHHhhcC-CCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999887 8999998764221 1221110 0111111 111122222 25
Q ss_pred CCEEEEcCCCCCC-C--CCchh---hHHHHhHHHHHHHHHH----hhhhCCCcEEEEecC
Q 025075 89 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEG----IAKCCPNATVNLISN 138 (258)
Q Consensus 89 aDiVIi~ag~~~~-~--g~~r~---d~~~~n~~i~~~i~~~----i~~~~p~a~viv~tN 138 (258)
.|+||.++|.... + ..+.. +.+..|+.-...+.+. +++.. .+.+|++|.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS 137 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITS 137 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEec
Confidence 8999999986421 1 11222 2356676655555554 33333 345666654
No 173
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.60 E-value=0.00033 Score=62.39 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=46.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
||+|||. |.+|+.++..|...|+ +|.+||+++++... +..... . ...+..+++++||+||++.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~~~~--~~~~g~----~---~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEVADE--LLAAGA----V---TAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH--HHHCCC----c---ccCCHHHHHhcCCEEEEec
Confidence 5999998 9999999999999887 89999987643221 222211 1 1235568899999999986
No 174
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.60 E-value=0.0009 Score=57.74 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=66.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------- 86 (258)
.+++.|+||+|.+|.+++..|+..|. +|++.++++.. ....++.+.. ..+..+.. -+| +++++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999987 89999988742 1222233221 12221111 112 22222
Q ss_pred CCCCEEEEcCCCCCCC---C---CchhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKP---G---MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~---g---~~r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN 138 (258)
...|+||.++|..... . +.-.+.+..|+.- .+.+.+.+.+..+.+.++++|.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss 144 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGS 144 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcc
Confidence 3489999999864211 1 1122334456554 5666666633334455665553
No 175
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.60 E-value=0.00092 Score=60.12 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHH------HhcCCCCCeEEEEeCCCchHhhhCCCCEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD------ISHMDTGAVVRGFLGQPQLENALTGMDLVI 93 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~d------l~~~~~~~~v~~~~~~~d~~~a~~~aDiVI 93 (258)
.|||+|+|+ |.||+.++..|...|. +|.++++..+.-.++- +........+.. ...+ .+.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~-~~~~--~~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAI-PAET--ADAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeecc-CCCC--cccccccCEEE
Confidence 479999998 9999999999998886 8999998642111110 100000001111 0111 12356889999
Q ss_pred EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075 94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165 (258)
Q Consensus 94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~ 165 (258)
+|. |.-. ..+.++.+..+ .|++.++.+-|=++..- .+++. +|.+++++-
T Consensus 76 v~v----K~~~------------~~~al~~l~~~l~~~t~vv~lQNGv~~~e-----~l~~~--~~~~~v~~g 125 (305)
T PRK05708 76 LAC----KAYD------------AEPAVASLAHRLAPGAELLLLQNGLGSQD-----AVAAR--VPHARCIFA 125 (305)
T ss_pred EEC----CHHh------------HHHHHHHHHhhCCCCCEEEEEeCCCCCHH-----HHHHh--CCCCcEEEE
Confidence 996 2111 23344455554 48888999999998422 22332 677788755
No 176
>PRK06182 short chain dehydrogenase; Validated
Probab=97.60 E-value=0.0007 Score=59.21 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC-------CCCEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-------GMDLV 92 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-------~aDiV 92 (258)
+++|.|+||+|.+|.+++..|...|. +|++.+++.++.. ++.........-++....++++.++ +.|++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l~--~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKME--DLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 45899999999999999999998887 8999998754211 2221111100111111122333333 78999
Q ss_pred EEcCCCCCCC---CCc---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 93 IIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 93 Ii~ag~~~~~---g~~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
|+++|..... ..+ -...+..|+. ..+.+.+.+++... +.+++++.
T Consensus 79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS 133 (273)
T PRK06182 79 VNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS 133 (273)
T ss_pred EECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 9999864321 111 2233455553 35666666665543 45665554
No 177
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.59 E-value=0.0033 Score=54.93 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=63.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhh-------hCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LTGM 89 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~~~a 89 (258)
+++.|+||+|++|++++..|+..|. .|.+.+++.+... ++.... ...+..+.. -+| +.+. +...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDALD--DLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999887 8889887653211 111110 011111111 112 2222 2457
Q ss_pred CEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHh----hhhCCCcEEEEecC
Q 025075 90 DLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN 138 (258)
Q Consensus 90 DiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i----~~~~p~a~viv~tN 138 (258)
|+||+++|...... .+. ...+..|+.-...+++.+ ++.+ .+.++++|.
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS 135 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG-GGRIVQVSS 135 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence 99999998653221 111 234556776666666665 3333 345555553
No 178
>PRK12320 hypothetical protein; Provisional
Probab=97.55 E-value=0.00064 Score=67.54 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=65.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
|||.|+||+|++|++++..|..+|+ +|..+|+.... ..+.... .+. ++. ...+.++++++|+||++++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~ve-~v~~Dl~-d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRVD-YVCASLR-NPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCce-EEEccCC-CHHHHHHhcCCCEEEEcCccC
Confidence 5899999999999999999999887 89999975421 1111110 111 111 112456678999999998742
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
. .. ....|+.....+++.+++.+. .+|.+|
T Consensus 72 ~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 72 T--SA----PGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred c--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 1 11 124677888888888887664 444444
No 179
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.55 E-value=0.0003 Score=63.59 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhCCCCcEEEEEeCCCCh----------hH--HHH----H-hcCCC--------CCeEEEEeCCCchHhhh
Q 025075 32 IGQPLAMLMKINPLVSVLHLYDVVNTP----------GV--TAD----I-SHMDT--------GAVVRGFLGQPQLENAL 86 (258)
Q Consensus 32 VG~~~a~~L~~~~~~~ei~L~D~~~~~----------g~--~~d----l-~~~~~--------~~~v~~~~~~~d~~~a~ 86 (258)
+|..++..++..|+ +|+|+|++++. +. ..+ + ..... ...+... .+.|+++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVV-ARDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEee-cCcchHHHh
Confidence 57788888899998 99999998731 10 001 0 01000 1133321 122466889
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~ 165 (258)
++||+||.++ .++.++.+++...+.+.+ |++++ .||.+.. .++++..... .|+|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~---~~~~la~~~~--~p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTF---LVTDLQRHVA--HPERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccC---CHHHHHhhcC--CcccEEEE
Confidence 9999999986 345777888888899987 45555 7777664 2344444432 45788887
No 180
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.55 E-value=0.00027 Score=63.24 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|+||+|||. |.+|.+++..|...|+ +|.+||+++++.. ++.... .. ...++.+++++||+||++.
T Consensus 1 m~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~~~--~~~~~g----~~---~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQAVD--ALVDKG----AT---PAASPAQAAAGAEFVITML 65 (296)
T ss_pred CCeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHcC----Cc---ccCCHHHHHhcCCEEEEec
Confidence 358999998 9999999999999887 8999999865322 222211 11 1235567899999999986
No 181
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.54 E-value=0.0008 Score=61.91 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=73.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh------hHH----HHHh----cCCCCCeEEEEeCCCchHhhh
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GVT----ADIS----HMDTGAVVRGFLGQPQLENAL 86 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~------g~~----~dl~----~~~~~~~v~~~~~~~d~~~a~ 86 (258)
++|+|||- |+||..+|..++.+|. ++.-+|+|+.+ |+. .++. ......+++ .|+|. +.+
T Consensus 10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~-~~l 82 (436)
T COG0677 10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP-EEL 82 (436)
T ss_pred eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh-hhc
Confidence 79999998 9999999999999998 89999998741 110 0010 111112343 35676 468
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE--ecCCCCCcHHHHHHHHHH
Q 025075 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL--ISNPVNSTVPIAAEVFKK 153 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv--~tNPvd~~~~i~t~~~~~ 153 (258)
+.||++|+|.-.|-+... +-.+..+.+-++.|.++=.++-+++ .|-|..++=-++--++..
T Consensus 83 ~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 83 KECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred ccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 899999999876654421 1123445556666666544443333 466766544343333333
No 182
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.53 E-value=0.0011 Score=59.53 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=45.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC---CCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVIi~a 96 (258)
|||+|||. |.+|++++..|...++ +|..||+++++... +.+.. .. ...++++.+++ +|+||++.
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~~~--~~~~g----~~---~~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAVDV--AGKLG----IT---ARHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHH--HHHCC----Ce---ecCCHHHHHHhCCCCCEEEEEe
Confidence 58999998 9999999999998887 89999987643222 22211 11 12345566655 69999985
No 183
>PRK05717 oxidoreductase; Validated
Probab=97.52 E-value=0.0014 Score=56.61 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=78.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC--CchHhh-------hCCCCE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENA-------LTGMDL 91 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~--~d~~~a-------~~~aDi 91 (258)
+++.|+||+|++|++++..|...|. +|++.|+++.+.... ..+............+ .++.++ +...|+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 87 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA 87 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4799999999999999999998886 899999875422211 1111110011111111 111111 134799
Q ss_pred EEEcCCCCCCCC-----Cch---hhHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075 92 VIIPAGVPRKPG-----MTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 161 (258)
Q Consensus 92 VIi~ag~~~~~g-----~~r---~d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k 161 (258)
+|.++|...... .+. .+.+..|+.-...+.+.+.++ ...+.++++|..... . +.+..-
T Consensus 88 li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~-----------~-~~~~~~ 155 (255)
T PRK05717 88 LVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR-----------Q-SEPDTE 155 (255)
T ss_pred EEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc-----------C-CCCCCc
Confidence 999998653211 111 234566766666666665432 234566666643321 1 122223
Q ss_pred EEEEeeccHHHHHHHHHHHhC
Q 025075 162 LLGVTMLDVVRANTFVAEVLG 182 (258)
Q Consensus 162 viG~t~lds~R~~~~la~~l~ 182 (258)
.++.+..--..+-+.++++++
T Consensus 156 ~Y~~sKaa~~~~~~~la~~~~ 176 (255)
T PRK05717 156 AYAASKGGLLALTHALAISLG 176 (255)
T ss_pred chHHHHHHHHHHHHHHHHHhc
Confidence 444443223356667777775
No 184
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.52 E-value=0.0003 Score=55.64 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=53.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.-+..|+.|+|| |.+|..+++.|...|. ++|.+++++.++++. |........+.... ..++.+.+.++|+||.+.
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~--l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEA--LAEEFGGVNIEAIP-LEDLEEALQEADIVINAT 83 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHH--HHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHH--HHHHcCccccceee-HHHHHHHHhhCCeEEEec
Confidence 444569999998 9999999999999875 589999987654332 22111111233322 246667889999999987
Q ss_pred CCC
Q 025075 97 GVP 99 (258)
Q Consensus 97 g~~ 99 (258)
+.+
T Consensus 84 ~~~ 86 (135)
T PF01488_consen 84 PSG 86 (135)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 185
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.52 E-value=0.00068 Score=61.76 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
..++|+|||. |.+|+.++..|...|. +|..||++.... .+. .. ...++++++++||+|+++...
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~---~~~~l~ell~~aDiVil~lP~ 208 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT---YKDSVKEAIKDADIISLHVPA 208 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh---ccCCHHHHHhcCCEEEEeCCC
Confidence 3468999998 9999999999988887 999999875311 110 01 124678899999999998621
Q ss_pred CCCCCCchhhHHHHhHHHH-HHHHHHhhhhCCCcEEEEecC
Q 025075 99 PRKPGMTRDDLFNINAGIV-RTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~-~~i~~~i~~~~p~a~viv~tN 138 (258)
.+ .+..++ .+. +....|++++|+++-
T Consensus 209 --t~---------~t~~li~~~~---l~~mk~gavlIN~aR 235 (330)
T PRK12480 209 --NK---------ESYHLFDKAM---FDHVKKGAILVNAAR 235 (330)
T ss_pred --cH---------HHHHHHhHHH---HhcCCCCcEEEEcCC
Confidence 11 111111 222 333347889998874
No 186
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.52 E-value=0.0006 Score=64.94 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=63.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC--CCeEEEEeCCCchHhhhC---CCCEEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALT---GMDLVII 94 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~---~aDiVIi 94 (258)
|.+|+|||. |.+|++++..|+..|+ +|.+||+++++... +..... ...+. ..+++++.++ ++|+||+
T Consensus 1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~~~~--l~~~~~~~g~~i~---~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEKTEE--FVKKAKEGNTRVK---GYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH--HHHhhhhcCCcce---ecCCHHHHHhcCCCCCEEEE
Confidence 358999998 9999999999999998 89999998753222 221100 11121 2356777665 5898888
Q ss_pred cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCC
Q 025075 95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV 140 (258)
Q Consensus 95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv 140 (258)
++- ++ +.++++++.+..+ .|+.++|..+|-.
T Consensus 73 ~v~----~~-----------~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 73 LIK----AG-----------EAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred EeC----Ch-----------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 752 22 2234444444443 4677888887743
No 187
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.51 E-value=0.00086 Score=59.26 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=44.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|||+|||. |.+|.+++..|...|+..+|..+|++++.... +..... ... ..++.+ +.++|+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~--~~~~g~---~~~---~~~~~~-~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLKK--ALELGL---VDE---IVSFEE-LKKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH--HHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence 58999997 99999999999988865578999987642111 111111 100 123444 44699999996
No 188
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.51 E-value=0.00077 Score=60.80 Aligned_cols=119 Identities=24% Similarity=0.262 Sum_probs=73.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-----HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-----~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
|||+|+|+ |.||+.+++.|.+.|. +|.++-+++. .+. +.+.+.......... ..++ .+....+|+||++
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~-~~~~-~~~~~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVV-AATD-AEALGPADLVIVT 74 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHH-HHHHHhCCeEEecCCCccccccc-cccC-hhhcCCCCEEEEE
Confidence 69999998 9999999999999883 6777766542 111 111111110011111 1222 3667899999999
Q ss_pred CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE-EEeec
Q 025075 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTML 168 (258)
Q Consensus 96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi-G~t~l 168 (258)
. |..+ ..+.++.+..+. |+++|+.+-|-++. . +.+++. +|+++|+ |+|..
T Consensus 75 v----Ka~q------------~~~al~~l~~~~~~~t~vl~lqNG~g~----~-e~l~~~--~~~~~il~G~~~~ 126 (307)
T COG1893 75 V----KAYQ------------LEEALPSLAPLLGPNTVVLFLQNGLGH----E-EELRKI--LPKETVLGGVTTH 126 (307)
T ss_pred e----cccc------------HHHHHHHhhhcCCCCcEEEEEeCCCcH----H-HHHHHh--CCcceEEEEEeee
Confidence 6 3322 255667777765 67788889999983 2 334443 5666665 67543
No 189
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=97.51 E-value=0.0058 Score=52.74 Aligned_cols=118 Identities=13% Similarity=0.145 Sum_probs=66.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------C
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------T 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------~ 87 (258)
++|.|+||+|.+|.+++..|++.|. +|+++|++.... ...++........+..+.. -+| +..++ .
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3699999999999999999999887 899999876421 1112221110011221111 112 22222 3
Q ss_pred CCCEEEEcCCCCCCCC---Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCC
Q 025075 88 GMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV 140 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g---~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPv 140 (258)
..|+||.++|.+.... .+.. ..+..|+. +.+.+.+.+.+..+++.++.+|...
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~ 143 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS 143 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence 5799999998654221 1222 22344543 3556666666555456777666543
No 190
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.50 E-value=0.0018 Score=54.98 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=63.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC----CCchHhhh-------C
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENAL-------T 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~----~~d~~~a~-------~ 87 (258)
++|.|+||+|.+|..++..|+..|. +|+++++++... ...++... ..+..+.. ..++.+.+ .
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999988887 899999876421 11223221 11221111 11222223 3
Q ss_pred CCCEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCC
Q 025075 88 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNP 139 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP 139 (258)
.+|+||.++|..... ..+.. +.+..|+.....+.+.+.+. ...+.++++|..
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 799999998764321 11222 23445555444444333322 234566666654
No 191
>PLN02253 xanthoxin dehydrogenase
Probab=97.50 E-value=0.0026 Score=55.77 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=78.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEE----EeCCCchHhhhC------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRG----FLGQPQLENALT------ 87 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~----~~~~~d~~~a~~------ 87 (258)
.+++.|+||+|.+|.+++..|+..|. +|+++|++..... ..++.. ...+.. +....+++++++
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999887 8999998754211 122211 111111 111112233333
Q ss_pred -CCCEEEEcCCCCCCC-C----Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHh
Q 025075 88 -GMDLVIIPAGVPRKP-G----MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 154 (258)
Q Consensus 88 -~aDiVIi~ag~~~~~-g----~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~ 154 (258)
..|++|+++|....+ + .+. ...+..|+.-. +.+.+.+.+. ..+.+++++..... .
T Consensus 93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ii~isS~~~~-----------~ 160 (280)
T PLN02253 93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL-KKGSIVSLCSVASA-----------I 160 (280)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCceEEEecChhhc-----------c
Confidence 689999999864321 1 111 23455565443 3344444332 34566666543320 1
Q ss_pred CCCCCCcEEEEeeccHHHHHHHHHHHhCC
Q 025075 155 GTYDPKKLLGVTMLDVVRANTFVAEVLGL 183 (258)
Q Consensus 155 ~~~~~~kviG~t~lds~R~~~~la~~l~v 183 (258)
+ .+....++.+..-...+-+.++++++-
T Consensus 161 ~-~~~~~~Y~~sK~a~~~~~~~la~e~~~ 188 (280)
T PLN02253 161 G-GLGPHAYTGSKHAVLGLTRSVAAELGK 188 (280)
T ss_pred c-CCCCcccHHHHHHHHHHHHHHHHHhhh
Confidence 1 222234555443344566777777753
No 192
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.50 E-value=0.0049 Score=52.68 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.++|.|+||+|.+|..++..|+..|. +|++++++..
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~ 40 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEE 40 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35899999999999999999999887 7999999864
No 193
>PRK07856 short chain dehydrogenase; Provisional
Probab=97.50 E-value=0.0018 Score=55.81 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=63.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhh-------CC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENAL-------TG 88 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~~ 88 (258)
.+++.|+||+|.+|..++..|+..|. +|++.|++... ..... .+..+. ...++++.+ ..
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVDGR----PAEFHAADVRDPDQVAALVDAIVERHGR 75 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhcCC----ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35899999999999999999999887 89999987532 01110 111111 111223333 34
Q ss_pred CCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhh----hhCCCcEEEEecCC
Q 025075 89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISNP 139 (258)
Q Consensus 89 aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~----~~~p~a~viv~tNP 139 (258)
.|+||.++|...... .+ -...+..|+.-...+.+.+. +....+.++++|.-
T Consensus 76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~ 136 (252)
T PRK07856 76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSV 136 (252)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Confidence 599999998642211 11 12345556655544544443 22234667766653
No 194
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.50 E-value=0.00078 Score=58.10 Aligned_cols=110 Identities=22% Similarity=0.259 Sum_probs=68.3
Q ss_pred HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCc--EEEEEeCCC----Chh-----HHHHHhcCCCCCeEEE
Q 025075 7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVS--VLHLYDVVN----TPG-----VTADISHMDTGAVVRG 75 (258)
Q Consensus 7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~--ei~L~D~~~----~~g-----~~~dl~~~~~~~~v~~ 75 (258)
|.++.+....+.+..||.|+|| |..|..++..|...|. + +|.++|++. ++. ...++.+......
T Consensus 12 ~~~al~~~g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~--- 86 (226)
T cd05311 12 LLNALKLVGKKIEEVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK--- 86 (226)
T ss_pred HHHHHHHhCCCccCCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---
Confidence 4444444333455579999998 9999999999988775 4 899999983 222 1122222110001
Q ss_pred EeCCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 76 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 76 ~~~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
. ..++.++++++|++|.+.+ +|+- + .+..+.+ +++.+++.++||..
T Consensus 87 ~--~~~l~~~l~~~dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~ 132 (226)
T cd05311 87 T--GGTLKEALKGADVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVP 132 (226)
T ss_pred c--cCCHHHHHhcCCEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCC
Confidence 1 1356688999999998864 3431 1 2333333 36677777889975
No 195
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.48 E-value=0.0036 Score=54.08 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=64.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCchHhhh-------CCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQLENAL-------TGMD 90 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~~~a~-------~~aD 90 (258)
+++.|+|++|.+|.+++..|+.+|. +|++.|++..... ..++... . ..+. ++....++++++ ...|
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPA-A-IAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCc-e-EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999987 8999998765222 1122111 0 0111 011111222323 3689
Q ss_pred EEEEcCCCCCC-C--CCc---hhhHHHHhHHHHHHHHHHhh----hhCCCcEEEEecC
Q 025075 91 LVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISN 138 (258)
Q Consensus 91 iVIi~ag~~~~-~--g~~---r~d~~~~n~~i~~~i~~~i~----~~~p~a~viv~tN 138 (258)
++|.++|.... + ..+ -.+.+..|+.-...+.+.+. +..+.+.+++++.
T Consensus 83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 140 (257)
T PRK07067 83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS 140 (257)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99999886421 1 111 12335566555544554443 3234466666665
No 196
>PRK08219 short chain dehydrogenase; Provisional
Probab=97.48 E-value=0.0012 Score=55.63 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=46.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE--EEeCCCchHhhhC---CCCEEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR--GFLGQPQLENALT---GMDLVII 94 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~--~~~~~~d~~~a~~---~aDiVIi 94 (258)
++++.|+||+|++|..++..|+++ . +|++++++..... ++.+......+. ++....++.++++ +.|.||+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERLD--ELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHHH--HHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 468999999999999999988877 4 7999998753211 121110000111 1111123344444 5999999
Q ss_pred cCCCC
Q 025075 95 PAGVP 99 (258)
Q Consensus 95 ~ag~~ 99 (258)
++|..
T Consensus 78 ~ag~~ 82 (227)
T PRK08219 78 NAGVA 82 (227)
T ss_pred CCCcC
Confidence 99864
No 197
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.48 E-value=0.0027 Score=54.82 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=66.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe--CC--CchHhhh-------C
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL--GQ--PQLENAL-------T 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~--~~--~d~~~a~-------~ 87 (258)
++|.|+||+|.+|..++..|+..|. +|++.|+++.+. ...++.... ..+..+. .+ .++.+.+ .
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999887 899999876421 111222211 1111111 11 1222222 3
Q ss_pred CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCC
Q 025075 88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 140 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPv 140 (258)
..|+||+++|...... .+ -.+.+..|+.-...+.+.+.++ ...+.++++|...
T Consensus 87 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~ 148 (255)
T PRK07523 87 PIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQ 148 (255)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccch
Confidence 5799999998643111 11 1234556665554455544443 2345666666543
No 198
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.47 E-value=0.0013 Score=58.89 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=44.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC---CCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVIi~a 96 (258)
|||+|||. |.+|++++..|...|+ +|.+||+++++... +.+.. ... ..++++.++. +|+||++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~~~~--~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEAVEA--LAEEG----ATG---ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHHHHH--HHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence 58999998 9999999999999887 89999998653222 22211 111 2344555554 69999985
No 199
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.46 E-value=0.0033 Score=54.08 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=31.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
|+|.|+||+|.+|..++..|...|. +|+++++++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~ 35 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQE 35 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHH
Confidence 5899999999999999999998887 8999998764
No 200
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.46 E-value=0.0023 Score=59.96 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCe-EE-EEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VR-GFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~aDiVIi~a 96 (258)
++++|.|+||+|.+|.+++..|...|. +|+++|++.++.. ..+.+...... +. +.....++.+.+.+.|++|+.+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l~-~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKIT-LEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-HHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 456899999999999999999999887 8999998653211 11211111111 11 1111123445578899999999
Q ss_pred CCCCCCCCch---hhHHHHhHH----HHHHHHHHhhhh
Q 025075 97 GVPRKPGMTR---DDLFNINAG----IVRTLCEGIAKC 127 (258)
Q Consensus 97 g~~~~~g~~r---~d~~~~n~~----i~~~i~~~i~~~ 127 (258)
|.......+. .+.++.|.. +++.+.+.+++.
T Consensus 254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~ 291 (406)
T PRK07424 254 GINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN 291 (406)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8653322222 234555655 445555555543
No 201
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00065 Score=58.51 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=47.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCC--chHhh-hCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP--QLENA-LTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~--d~~~a-~~~aDiVIi~ag 97 (258)
|+++|+|+ |.+|+++|..|...|+ +++++|.+++..... +.+.. ...+-.-.+++ -|+++ +.++|++|.+.|
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~-~~~~~-~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEF-LADEL-DTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHH-hhhhc-ceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 68999998 9999999999999998 999999987532210 11111 11111111111 23444 689999999864
No 202
>PRK08278 short chain dehydrogenase; Provisional
Probab=97.46 E-value=0.0089 Score=52.41 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---------hHHHHHhcCCCCCeEEEE----eCCCchHhhh
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGF----LGQPQLENAL 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---------g~~~dl~~~~~~~~v~~~----~~~~d~~~a~ 86 (258)
.+++.|+||+|.+|..++..|++.|. +|++++++... ....++..... .+..+ ....++.+.+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG--QALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHH
Confidence 35799999999999999999999887 89999986531 01112221111 11111 1111222233
Q ss_pred -------CCCCEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCCCCcHHHHHHH
Q 025075 87 -------TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEV 150 (258)
Q Consensus 87 -------~~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPvd~~~~i~t~~ 150 (258)
...|++|+++|..... ..+.. ..+..|+.-...+.+.+..+ ...+.++++|.+...
T Consensus 82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~-------- 153 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL-------- 153 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc--------
Confidence 2689999999863211 12222 23444554333343333322 234677766654321
Q ss_pred HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194 (258)
Q Consensus 151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G 194 (258)
....++....++.+.....++-..++++++ +..|++..+.
T Consensus 154 --~~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~ 193 (273)
T PRK08278 154 --DPKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW 193 (273)
T ss_pred --cccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence 000123334555554444566777777775 4556655444
No 203
>PRK12828 short chain dehydrogenase; Provisional
Probab=97.45 E-value=0.0016 Score=55.13 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeCCCchHhhh-------CCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENAL-------TGMD 90 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~~~d~~~a~-------~~aD 90 (258)
.++|.|+||+|.+|+.++..|+++|. +|+++|++..+ ....++.........-++....++.+++ ...|
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 84 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD 84 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence 35899999999999999999998887 79999997642 1122232221110001111111222223 3689
Q ss_pred EEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075 91 LVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (258)
Q Consensus 91 iVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN 138 (258)
+||.++|...... .+. .+.+..|......+++.+.+. .+...+++++.
T Consensus 85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (239)
T PRK12828 85 ALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA 141 (239)
T ss_pred EEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 9999987542111 111 123445555444444444321 23445665554
No 204
>PRK07806 short chain dehydrogenase; Provisional
Probab=97.45 E-value=0.002 Score=55.17 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTGAVVRGFL-GQPQ---LENAL------ 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------ 86 (258)
.+++.|+||+|++|.+++..|...|. +|++++++.. .. ...++.... ..+..+. .-+| +...+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999998887 8888887643 11 112232211 1111111 1112 22222
Q ss_pred -CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075 87 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 138 (258)
Q Consensus 87 -~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN 138 (258)
.+.|+||.++|.......+..+.+..|......+++.+.++. .++.++++|.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 368999999875322111222334456665566666666543 2455665553
No 205
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.44 E-value=0.0027 Score=54.86 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=65.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhh-------hC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENA-------LT 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~~ 87 (258)
+++.|+||+|.+|++++..|...|. +|++.+++..+.. ..++.... ..+..+.+ -+| +.+. +.
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998887 8999998654211 11222111 11111111 112 2111 23
Q ss_pred CCCEEEEcCCCCCCCC---C---chhhHHHHhHHHHHHHHHHhhhh----CCCcEEEEecC
Q 025075 88 GMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISN 138 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g---~---~r~d~~~~n~~i~~~i~~~i~~~----~p~a~viv~tN 138 (258)
..|.||+++|...... . .-.+.+..|+.-...+.+.+.++ .+.+.++++|.
T Consensus 89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 6799999998532111 1 11234567777666666665543 23456666665
No 206
>PRK06101 short chain dehydrogenase; Provisional
Probab=97.44 E-value=0.0032 Score=53.95 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=64.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCe-EE-EEeCCCchHhhhCC----CCEEEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VR-GFLGQPQLENALTG----MDLVII 94 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~----aDiVIi 94 (258)
.++.|+||+|.+|..++..|+.+|. +|++.|++++.... +........ +. ++....+++++++. .|.+|+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLDE--LHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHHH--HHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 4799999999999999999999887 89999987642211 111110001 11 11111233334433 478888
Q ss_pred cCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075 95 PAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 138 (258)
Q Consensus 95 ~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 138 (258)
.+|...... .+. .+.+..|+.-...+.+.+..+ .+.+.+++++.
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS 128 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS 128 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence 887432111 122 234666776666666666543 23455666654
No 207
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.44 E-value=0.0035 Score=54.36 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=31.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
|++.|+||+|.+|..++..|+..|. +|++.|+++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~ 35 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEE 35 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence 5899999999999999999999987 8999998764
No 208
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.43 E-value=0.0014 Score=56.00 Aligned_cols=96 Identities=21% Similarity=0.282 Sum_probs=66.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
|||+|||. |.+|..+.-.+.... -++-+.+||.+.++... +......+. .+++++.+++.|+++-+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~--~~~~~~~~~------~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKE--LEASVGRRC------VSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHH--HHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence 58999998 999999987776542 35678899998764332 222211111 1456677799999999985
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
.+.+++++.++-+.+.|.+++.++-=+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 4457888888888888877776554444
No 209
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.42 E-value=0.0016 Score=55.78 Aligned_cols=117 Identities=19% Similarity=0.054 Sum_probs=66.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC----CCchHhhh----CCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENAL----TGM 89 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~----~~d~~~a~----~~a 89 (258)
|++|.|+||+|.+|..++..|+..|. +|++.|++++.. ...++.... ...+..+.. ..++++.+ +..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 45899999999999999999999887 899999876421 122222211 112221111 11222222 245
Q ss_pred CEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCC
Q 025075 90 DLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 139 (258)
Q Consensus 90 DiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNP 139 (258)
|++|+++|..... ..+.. +.+..|+.-...+.+.+.++ ...+.++++|-.
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 9999998753211 12222 34556666555555554433 234566666543
No 210
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=97.42 E-value=0.0006 Score=60.31 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=83.0
Q ss_pred EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcCCCCCC
Q 025075 24 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGVPRK 101 (258)
Q Consensus 24 ~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ag~~~~ 101 (258)
.|+||+|++|++++..|...|. ++++..... ..|+.+ ..++.+.++ +.|+||++|+....
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~ 62 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTR------------QADVEAFFAKEKPTYVILAAAKVGG 62 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCC------------HHHHHHHHhccCCCEEEEeeeeecc
Confidence 3789999999999999988876 444443211 122221 123344444 57999999975321
Q ss_pred ---CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC-----CCCcHHHHHHHHHHhCCCCCCc-EEEEeeccHHH
Q 025075 102 ---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-----VNSTVPIAAEVFKKAGTYDPKK-LLGVTMLDVVR 172 (258)
Q Consensus 102 ---~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP-----vd~~~~i~t~~~~~~~~~~~~k-viG~t~lds~R 172 (258)
......+....|+.....+++.+++.+.. .+|.+|.- .+. . .+.|-....+...|.. ..|.+.....+
T Consensus 63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~-~-~~~E~~~~~~~~~p~~~~Y~~sK~~~e~ 139 (306)
T PLN02725 63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAP-Q-PIPETALLTGPPEPTNEWYAIAKIAGIK 139 (306)
T ss_pred cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCC-C-CCCHHHhccCCCCCCcchHHHHHHHHHH
Confidence 11234567788999999999999987643 33333321 000 0 0111000000011111 24444333333
Q ss_pred HHHHHHHHhCCCCCcee-EEEEecC
Q 025075 173 ANTFVAEVLGLDPRDVD-VPVVGGH 196 (258)
Q Consensus 173 ~~~~la~~l~v~~~~v~-~~v~G~h 196 (258)
+.....+..+++...++ ..++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~R~~~vyG~~ 164 (306)
T PLN02725 140 MCQAYRIQYGWDAISGMPTNLYGPH 164 (306)
T ss_pred HHHHHHHHhCCCEEEEEecceeCCC
Confidence 43444566677776777 4588875
No 211
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=97.41 E-value=0.0012 Score=58.64 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=64.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhH-HHHHhcCCCCCeEEEEe----CCCchHhhhC--CCCEEE
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTGAVVRGFL----GQPQLENALT--GMDLVI 93 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~-~~dl~~~~~~~~v~~~~----~~~d~~~a~~--~aDiVI 93 (258)
||.|+||+|++|..++..|...|. +|+++|.... ... ...+.... .+..+. ...+++++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999998887 7888876432 111 11111100 111111 1123344444 699999
Q ss_pred EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075 94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPN 130 (258)
Q Consensus 94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~ 130 (258)
.++|....+ .....+.+..|+.....+++.+.+.+..
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 114 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK 114 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC
Confidence 999864322 1223445678888888888888876544
No 212
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=97.41 E-value=0.0091 Score=51.10 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CC---chH-------hhhCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLE-------NALTG 88 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~---d~~-------~a~~~ 88 (258)
.++|.|+||+|.+|.+++..|+..|. +|++.+++........+.... ..+..+.. -+ ++. +....
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFGH 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999987 899999765322112222211 11111111 11 121 12246
Q ss_pred CCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHH----HhhhhCCCcEEEEecC
Q 025075 89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISN 138 (258)
Q Consensus 89 aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~----~i~~~~p~a~viv~tN 138 (258)
.|++|.++|...... .+ -.+.+..|+.-...+++ .+.+.+..+.+++++.
T Consensus 81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 140 (248)
T TIGR01832 81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS 140 (248)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999998643211 11 12335556554444444 4433333466666654
No 213
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.40 E-value=0.0016 Score=57.04 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=46.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|||+|||+ |.+|++++..|...++ ..++.++|++.++.. ++.... . .... ..+..+.++++|+||++.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~--~l~~~~-~-~~~~---~~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAA--RLAERF-P-KVRI---AKDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHH--HHHHHc-C-CceE---eCCHHHHHHhCCEEEEEe
Confidence 58999997 9999999999988764 346788887654322 222211 0 1111 235567789999999986
No 214
>PRK09135 pteridine reductase; Provisional
Probab=97.40 E-value=0.0036 Score=53.35 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=58.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC------
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------ 87 (258)
++|.|+||+|++|++++..|+..|. +|+++++... . ....++.+.... .+..+. .-+| +..+++
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRPG-SAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999887 8999987542 1 111223221110 111111 1112 222233
Q ss_pred -CCCEEEEcCCCCCC--CC-Cc---hhhHHHHhHHHHHHHHHHhhh
Q 025075 88 -GMDLVIIPAGVPRK--PG-MT---RDDLFNINAGIVRTLCEGIAK 126 (258)
Q Consensus 88 -~aDiVIi~ag~~~~--~g-~~---r~d~~~~n~~i~~~i~~~i~~ 126 (258)
+.|+||.++|.... .. .+ -.+.+..|+.-...+.+.+.+
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 129 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP 129 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHH
Confidence 57999999985321 11 11 233555676655555555543
No 215
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=97.40 E-value=0.0021 Score=54.79 Aligned_cols=114 Identities=22% Similarity=0.333 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeC-CC---chHhh-------h
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLG-QP---QLENA-------L 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~-~~---d~~~a-------~ 86 (258)
.+++.|+||+|.+|+.++..|..+|. .|.+.+++..+... .++. . .+..+.. -. ++++. +
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~---~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG---E--RVKIFPANLSDRDEVKALGQKAEADL 78 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC---C--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999886 78888876532111 1111 1 1111111 11 12221 3
Q ss_pred CCCCEEEEcCCCCCCC---CCc---hhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCC
Q 025075 87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 140 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPv 140 (258)
...|+||.++|..... ..+ -.+.+..|+.....+++.+.+. .+.+.+++++...
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 141 (245)
T PRK12936 79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV 141 (245)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence 4689999999864321 111 1234555665544444443322 2345666666543
No 216
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.40 E-value=0.00024 Score=63.41 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCChhH-----HHHHhcCCC-----CCeEEEEeCCCchHhhhCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGV-----TADISHMDT-----GAVVRGFLGQPQLENALTG 88 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~g~-----~~dl~~~~~-----~~~v~~~~~~~d~~~a~~~ 88 (258)
++||+-||| |+||......++ .++.+ +|.++|++..+-. .+.+..... .++-+....++|.+.+++.
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~i-~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e 78 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPDI-EVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE 78 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCce-EEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh
Confidence 469999998 999988765443 34443 8999999764211 111111110 1111112235789999999
Q ss_pred CCEEEEcCCCCCCC
Q 025075 89 MDLVIIPAGVPRKP 102 (258)
Q Consensus 89 aDiVIi~ag~~~~~ 102 (258)
||+|+++...|.|.
T Consensus 79 adlvfisvntptkt 92 (481)
T KOG2666|consen 79 ADLVFISVNTPTKT 92 (481)
T ss_pred cceEEEEecCCccc
Confidence 99999998777653
No 217
>PRK05875 short chain dehydrogenase; Provisional
Probab=97.39 E-value=0.011 Score=51.56 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=82.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC----CCchHhhhC------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG----QPQLENALT------ 87 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~------ 87 (258)
.+++.|+||+|.+|++++..|...|. +|++++++... ....++........+..+.. ..++.+.++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999987 89999987542 11222221110112221111 112222333
Q ss_pred -CCCEEEEcCCCCCCCC----Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075 88 -GMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT 156 (258)
Q Consensus 88 -~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPvd~~~~i~t~~~~~~~~ 156 (258)
..|++|.++|.....+ .+. .+.+..|+.-...+.+.+.++ ...+.++++|.... .. .
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~-----------~~-~ 152 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAA-----------SN-T 152 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh-----------cC-C
Confidence 6899999998542211 121 123444555554454443332 23456666654221 00 1
Q ss_pred CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075 157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194 (258)
Q Consensus 157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G 194 (258)
.|+.-.++.+......+.+.+++.++ +..+++.++.
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~i~ 188 (276)
T PRK05875 153 HRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVNSIR 188 (276)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence 22222333333333345556666664 4456655554
No 218
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.38 E-value=0.0059 Score=52.50 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=31.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
++|.|+||+|.+|..++..|...|. +|++++++..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~ 42 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGA--KVVVADRDAA 42 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence 5899999999999999999998886 8999998764
No 219
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.38 E-value=0.0014 Score=59.79 Aligned_cols=99 Identities=22% Similarity=0.229 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.+.++|.|+||+|++|+.++..|....-+.+|+++++++.+... +........+ .++++++.++|+||.+++
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~--La~el~~~~i------~~l~~~l~~aDiVv~~ts 224 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE--LQAELGGGKI------LSLEEALPEADIVVWVAS 224 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH--HHHHhccccH------HhHHHHHccCCEEEECCc
Confidence 34568999999899999999999754224589999986542222 2211100011 246789999999999988
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 142 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~ 142 (258)
.+...-.+..++ .+..+++=++-|=|+
T Consensus 225 ~~~~~~I~~~~l------------------~~~~~viDiAvPRDV 251 (340)
T PRK14982 225 MPKGVEIDPETL------------------KKPCLMIDGGYPKNL 251 (340)
T ss_pred CCcCCcCCHHHh------------------CCCeEEEEecCCCCC
Confidence 764211221111 356777778999773
No 220
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.38 E-value=0.0049 Score=53.56 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+|.+|.+++..|+..|. +|++.|++..
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~ 41 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDAD 41 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35899999999999999999999987 8999998764
No 221
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=97.36 E-value=0.0039 Score=53.36 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENAL------- 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~------- 86 (258)
.+++.|+||+|++|+.++..|+..|. +|+++|++..... ..++..... .+..+.. -.| +++.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999887 8999998764221 122322111 1221111 111 22222
Q ss_pred CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhh----hhCCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~----~~~p~a~viv~tN 138 (258)
...|+||+++|...... .+. ...+..|+.....+.+.+. +. +.+.+++++.
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~iss 139 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER-GAGRIVNIAS 139 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEECc
Confidence 35899999998532211 112 2235566665555444443 33 2345555554
No 222
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.35 E-value=0.0016 Score=57.21 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=64.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhh--------CCCCE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENAL--------TGMDL 91 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~--------~~aDi 91 (258)
++|.|+||+|.+|.+++..|+..|. +|++.+++.+... ++...... .+. ++....++++++ ...|+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~~--~l~~~~~~-~~~~Dl~d~~~~~~~~~~~~~~~~g~id~ 79 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDVA--ALEAEGLE-AFQLDYAEPESIAALVAQVLELSGGRLDA 79 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHCCce-EEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence 4799999999999999999999887 8999998764221 12221110 111 111111122222 24699
Q ss_pred EEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075 92 VIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 92 VIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN 138 (258)
+|.++|...... .+. .+.+..|+.- .+.+.+.+.+.+ .+.|+++|.
T Consensus 80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS 135 (277)
T PRK05993 80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS 135 (277)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence 999998643211 111 2345556544 566666666554 345666654
No 223
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.35 E-value=0.00069 Score=57.94 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=59.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEE--EeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
|+|+||+|.+|++++..|...++ +|..+=++........+.+... .+.. +....++.++++|+|.||++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~--~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA--EVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT--EEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc--eEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 78999999999999999988776 7888877664333333443321 1111 1112346778999999999875432
Q ss_pred CCCCchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075 101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~ 130 (258)
..+ .+..+.+++...+.+-+
T Consensus 77 ---~~~-------~~~~~~li~Aa~~agVk 96 (233)
T PF05368_consen 77 ---PSE-------LEQQKNLIDAAKAAGVK 96 (233)
T ss_dssp ---CCH-------HHHHHHHHHHHHHHT-S
T ss_pred ---hhh-------hhhhhhHHHhhhccccc
Confidence 111 33345666667666633
No 224
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.35 E-value=0.0013 Score=60.72 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=44.7
Q ss_pred CCeEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~-~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
|+||+|+||+|.+|..+.. .|.+..+ ..++.++......+....+... ...... ..|. +.++++|+||++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~~-~~~~~~Divf~a~~ 74 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFDI-DALKKLDIIITCQG 74 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCCh-hHhcCCCEEEECCC
Confidence 4799999999999999997 5555554 3568887654322222222221 111111 1222 46789999999875
No 225
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.35 E-value=0.0028 Score=57.04 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=67.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH-H----HhcC-----CCC-CeEEEEeCC----------C
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-D----ISHM-----DTG-AVVRGFLGQ----------P 80 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~-d----l~~~-----~~~-~~v~~~~~~----------~ 80 (258)
+|.|+||+|++|++++..|...|...+|+++.+........ . +... ... ..+..+.+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58899999999999999999887534788888765421110 1 1100 000 123322221 1
Q ss_pred chHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCc
Q 025075 81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 131 (258)
Q Consensus 81 d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a 131 (258)
++.+..+++|+||.+++.... .....++...|+.-...+++...+.....
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~ 130 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKP 130 (367)
T ss_pred HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence 234456789999999875321 22334556678888888888887765543
No 226
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.34 E-value=0.0012 Score=60.10 Aligned_cols=95 Identities=22% Similarity=0.266 Sum_probs=61.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
.++|+|||. |.+|+.++..|...|. +|..||+...... +.... .. . .++++.+++||+|+++...
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~~-----~~-~---~~l~ell~~aDiV~l~lP~- 214 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKELG-----AE-Y---RPLEELLRESDFVSLHVPL- 214 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHcC-----CE-e---cCHHHHHhhCCEEEEeCCC-
Confidence 469999998 9999999999988887 8999998653211 11111 11 1 2567889999999998621
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN 141 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd 141 (258)
.+ ++ ..++. .+.+....|++++|+++ ..+|
T Consensus 215 -t~-~T--------~~~i~--~~~~~~mk~ga~lIN~aRg~~vd 246 (333)
T PRK13243 215 -TK-ET--------YHMIN--EERLKLMKPTAILVNTARGKVVD 246 (333)
T ss_pred -Ch-HH--------hhccC--HHHHhcCCCCeEEEECcCchhcC
Confidence 11 11 11111 02333345889999986 4566
No 227
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.33 E-value=0.0034 Score=53.94 Aligned_cols=114 Identities=13% Similarity=0.219 Sum_probs=64.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHhhh-------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENAL------- 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~a~------- 86 (258)
.++|.|+|++|.+|.+++..|...|. +|++++++.... ...++.... ..+..+. ...++.+++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998887 899999876422 122332111 1121111 111222222
Q ss_pred CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN 138 (258)
.+.|+||.++|...... .+. .+.+..|+.- .+.+.+.+++... ..++++|.
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss 140 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS 140 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence 36899999998642211 111 1233344443 5666666665443 34555554
No 228
>PRK07069 short chain dehydrogenase; Validated
Probab=97.32 E-value=0.015 Score=49.77 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=65.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-CCh--hHHHHHhcCCCCCe---EE-EEeCCCchHh-------hhC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP--GVTADISHMDTGAV---VR-GFLGQPQLEN-------ALT 87 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~-~~~--g~~~dl~~~~~~~~---v~-~~~~~~d~~~-------a~~ 87 (258)
||.|+||+|.+|.+++..|...|. +|++.+++ ... ....++........ +. ++....++.+ .+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 489999999999999999998887 89999987 331 11112221110001 11 1111111211 234
Q ss_pred CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075 88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
..|+||.++|...... .+. ...+..|+. ..+.+.+.+.+... +.++++|..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss~ 139 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISSV 139 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecCh
Confidence 6899999998643211 111 234556665 66777777776543 455555543
No 229
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.32 E-value=0.011 Score=50.63 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+|.+|.+++..|...|. +|+++|+++.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~ 41 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAE 41 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35899999999999999999999886 8999998764
No 230
>PRK08263 short chain dehydrogenase; Provisional
Probab=97.31 E-value=0.0014 Score=57.32 Aligned_cols=111 Identities=14% Similarity=0.011 Sum_probs=62.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe--C--CCchHhh-------hCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--G--QPQLENA-------LTGM 89 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~--~~d~~~a-------~~~a 89 (258)
++|.|+||+|.+|++++..|+.+|. +|++.+++..... ++.+.. ...+..+. . ..++.+. +...
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATLA--DLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL 78 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999998886 8999998754211 111110 00111111 1 1112122 2467
Q ss_pred CEEEEcCCCCCCCC---Cc---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEec
Q 025075 90 DLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 90 DiVIi~ag~~~~~g---~~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~t 137 (258)
|.||+++|...... .+ -.+.+..|+.- .+.+.+.+++.... .++++|
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs 135 (275)
T PRK08263 79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS 135 (275)
T ss_pred CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 99999998753211 11 12334556554 45555555554433 455554
No 231
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.30 E-value=0.0038 Score=56.32 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=63.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
...+||+|||+ |.+|..++..|...+. .+|.++|++.++... +.... .... .. ..++.+.+.++|+||.+.+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~--la~~~-g~~~--~~-~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEE--LAKEL-GGNA--VP-LDELLELLNEADVVISATG 247 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHH--HHHHc-CCeE--Ee-HHHHHHHHhcCCEEEECCC
Confidence 34579999998 9999999988887553 489999987653322 22111 1111 11 1356778899999999976
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
.+.. ..++.+..+.. .....+++-+++|-|
T Consensus 248 ~~~~------------~~~~~~~~~~~--~~~~~~viDlavPrd 277 (311)
T cd05213 248 APHY------------AKIVERAMKKR--SGKPRLIVDLAVPRD 277 (311)
T ss_pred CCch------------HHHHHHHHhhC--CCCCeEEEEeCCCCC
Confidence 5421 11112221111 124567888999988
No 232
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.30 E-value=0.015 Score=49.89 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=30.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
++|.|+||+|++|++++..|+..|. +|+++|+..
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence 4689999999999999999999887 899999754
No 233
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=97.29 E-value=0.0025 Score=56.12 Aligned_cols=97 Identities=24% Similarity=0.277 Sum_probs=63.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC-CCCEEEEcCCCCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRK 101 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVIi~ag~~~~ 101 (258)
|+|.|++|+||+++...|...|+ +|.++-++..+... ..+.. +... +.+.+... ++|+||..||.|--
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~~----v~~~---~~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHPN----VTLW---EGLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCcc----cccc---chhhhcccCCCCEEEECCCCccc
Confidence 68999999999999999999988 89999887643221 12211 1111 11223333 79999999997643
Q ss_pred CC----CchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075 102 PG----MTRDDLFNINAGIVRTLCEGIAKCCPN 130 (258)
Q Consensus 102 ~g----~~r~d~~~~n~~i~~~i~~~i~~~~p~ 130 (258)
.. +....+...-+...+.+.+.|.+....
T Consensus 70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~ 102 (297)
T COG1090 70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETK 102 (297)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCC
Confidence 22 112334455567778888888866533
No 234
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.29 E-value=0.003 Score=57.12 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
..++|+|||. |.+|+.++..|..-|. +|..||....... . +..+....++++.+++||+|+++...
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~-----~------~~~~~~~~~l~e~l~~aDvvv~~lPl 200 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP-----G------VQSFAGREELSAFLSQTRVLINLLPN 200 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC-----C------ceeecccccHHHHHhcCCEEEECCCC
Confidence 3469999998 9999999999998887 8999997542110 0 00011123678999999999998621
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
. ..+..++. .+.+.+..|++++|+++
T Consensus 201 --t---------~~T~~li~--~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 201 --T---------PETVGIIN--QQLLEQLPDGAYLLNLA 226 (312)
T ss_pred --C---------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence 1 11222221 23344556889999987
No 235
>PLN02712 arogenate dehydrogenase
Probab=97.28 E-value=0.0019 Score=64.10 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=46.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh-CCCCEEEEc
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIP 95 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVIi~ 95 (258)
..+++||+|||. |.+|..++..|...|+ +|..+|++.....+.++ .+.. ..++++.+ +++|+||++
T Consensus 49 ~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~-------Gv~~---~~d~~e~~~~~aDvViLa 115 (667)
T PLN02712 49 NTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL-------GVSF---FLDPHDLCERHPDVILLC 115 (667)
T ss_pred cCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc-------CCEE---eCCHHHHhhcCCCEEEEc
Confidence 345579999997 9999999999998886 89999987432222111 1111 23455544 579999999
Q ss_pred C
Q 025075 96 A 96 (258)
Q Consensus 96 a 96 (258)
.
T Consensus 116 v 116 (667)
T PLN02712 116 T 116 (667)
T ss_pred C
Confidence 6
No 236
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.28 E-value=0.015 Score=49.52 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=48.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC----CCchHhhh-------C
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENAL-------T 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~----~~d~~~a~-------~ 87 (258)
+++.|+|++|.+|.+++..|+.+|. +|++.+++.... ...++... ...+..+.. ..++.+++ .
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999887 899999876421 11223211 112222111 11222233 3
Q ss_pred CCCEEEEcCCCC
Q 025075 88 GMDLVIIPAGVP 99 (258)
Q Consensus 88 ~aDiVIi~ag~~ 99 (258)
+.|+||.++|..
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 799999999864
No 237
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.28 E-value=0.0021 Score=58.98 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=45.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCChhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~-L~D~~~~~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
|||+|+||+|.+|..++..|...+.. +++ +++.+...++.+.-.+..... ... +. ..|.++.++++|+||++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLN-LE-PIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCce-ee-cCCHHHhhcCCCEEEECCC
Confidence 58999999999999999988876554 666 667655333322111211111 111 11 1234444469999999863
No 238
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.0068 Score=52.64 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=59.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
+++.|+||+|.+|.+++..|+..|. +|++++++......... +.. ...+. +.....++.+.+...|++|++||..
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 4799999999999999999999987 89999987521111111 110 10111 1111123445567899999999874
Q ss_pred CCCCCch---hhHHHHhHH----HHHHHHHHhhh
Q 025075 100 RKPGMTR---DDLFNINAG----IVRTLCEGIAK 126 (258)
Q Consensus 100 ~~~g~~r---~d~~~~n~~----i~~~i~~~i~~ 126 (258)
.....+. .+.+..|+. +.+.+.+.+.+
T Consensus 91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 124 (245)
T PRK12367 91 PGGRQDPENINKALEINALSSWRLLELFEDIALN 124 (245)
T ss_pred CcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3222222 234556665 44444444543
No 239
>PRK06179 short chain dehydrogenase; Provisional
Probab=97.27 E-value=0.0024 Score=55.57 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=62.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhC-------CCCEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT-------GMDLV 92 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~-------~aDiV 92 (258)
++|.|+||+|.+|++++..|..+|. +|++.+++...... ..+.. .+. ++....+++++++ ..|++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~~---~~~~D~~d~~~~~~~~~~~~~~~g~~d~l 77 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGVE---LLELDVTDDASVQAAVDEVIARAGRIDVL 77 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCCe---eEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence 4799999999999999999999887 89999987532111 01110 011 1111122334443 46999
Q ss_pred EEcCCCCCCCCC---c---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075 93 IIPAGVPRKPGM---T---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 93 Ii~ag~~~~~g~---~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
|.++|....... + -.+.+..|.. ..+.+.+.+.+.+ .+.|+++|..
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~ 133 (270)
T PRK06179 78 VNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSV 133 (270)
T ss_pred EECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCc
Confidence 999987432211 1 1234455543 3444444455444 3456666543
No 240
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.007 Score=53.84 Aligned_cols=65 Identities=28% Similarity=0.338 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH---H--HHHhcCCCCCeEEEEeCCCc-hHhhhCCCCEE
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---T--ADISHMDTGAVVRGFLGQPQ-LENALTGMDLV 92 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~---~--~dl~~~~~~~~v~~~~~~~d-~~~a~~~aDiV 92 (258)
.+++|+|+|. |.+|..++..|...|+ .+.+++.+...+. + +++.+. .+.+ ..++.++||+|
T Consensus 2 ~~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~----------~~~~~~~~~~~~aD~V 68 (279)
T COG0287 2 ASMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDE----------LTVAGLAEAAAEADLV 68 (279)
T ss_pred CCcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCcccc----------cccchhhhhcccCCEE
Confidence 3579999997 9999999999999998 5566666553221 1 111111 0112 14678899999
Q ss_pred EEcC
Q 025075 93 IIPA 96 (258)
Q Consensus 93 Ii~a 96 (258)
|++.
T Consensus 69 ivav 72 (279)
T COG0287 69 IVAV 72 (279)
T ss_pred EEec
Confidence 9996
No 241
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0014 Score=59.21 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=48.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHH-HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
++||+|+||+|.||+.+...|.++. .++++.++-..+..|+. .++..-.. .+.. ...|. .+++++|+|++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~~-~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAADE-FVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--ccccc-cccccCCEEEEeCc
Confidence 4699999999999999999999843 45677887665544443 33333211 1110 01222 45779999999986
No 242
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.26 E-value=0.0022 Score=59.51 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=47.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.+++||+|+||+|.+|..+...|..++.. +|.++..+...++.....+... ......+. ..+ .+.++++|+||++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence 35679999999999999999988887543 8888876544343221112110 00111011 112 23479999999986
Q ss_pred C
Q 025075 97 G 97 (258)
Q Consensus 97 g 97 (258)
+
T Consensus 113 p 113 (381)
T PLN02968 113 P 113 (381)
T ss_pred C
Confidence 4
No 243
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.26 E-value=0.0045 Score=53.81 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCch---Hhh-------
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQL---ENA------- 85 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d~---~~a------- 85 (258)
+.+++.|+||+|.+|.+++..|..+|. +|++.|++.+.. ...++.... ..+..+. .-++. .++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999998887 899999876421 122222211 1222111 11122 122
Q ss_pred hCCCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHH----hhhhCCCcEEEEecCC
Q 025075 86 LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP 139 (258)
Q Consensus 86 ~~~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~----i~~~~p~a~viv~tNP 139 (258)
+...|+||.++|...... .+ -.+.+..|+.....+.+. +.+..+.+.+++++.-
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~ 148 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISST 148 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccc
Confidence 236899999998532211 11 122344555544444444 4343455667766653
No 244
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.26 E-value=0.0014 Score=58.62 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=46.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|||+|||. |.+|++++..|...|+ ++.+||+++. . .++.... ... ..+..++.++||+||++.
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~-~--~~~~~~g----~~~---~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV-A--DELLSLG----AVS---VETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh-H--HHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 48999997 9999999999999997 8999998753 1 2222211 111 134567789999999986
No 245
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.24 E-value=0.00043 Score=61.59 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=58.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV 98 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ag~ 98 (258)
|||.|+|++|++|+++...|..+++ +++.+++.. .|+.+.. .+.+.++ .-|+||++|+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~------------~~~~~~~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE------------AVAKLLEAFKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH------------HHHHHHHHH--SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH------------HHHHHHHHhCCCeEecccee
Confidence 7999999999999999999998876 788886542 2333211 1112222 58999999875
Q ss_pred CCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe
Q 025075 99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136 (258)
Q Consensus 99 ~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~ 136 (258)
.... .....+....|+.....+++.+.+.+ +.+|-+
T Consensus 62 ~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~ 99 (286)
T PF04321_consen 62 TNVDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHI 99 (286)
T ss_dssp --HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEE
T ss_pred ecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEe
Confidence 3211 12344566788899999999888764 344444
No 246
>PRK09291 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.011 Score=50.87 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=62.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHH-HhcCCCCCeEE--EEeCCCchHhhhC-CCCEEEEc
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TAD-ISHMDTGAVVR--GFLGQPQLENALT-GMDLVIIP 95 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~d-l~~~~~~~~v~--~~~~~~d~~~a~~-~aDiVIi~ 95 (258)
++|.|+||+|.+|..++..|+..|. ++++.+++..... ..+ .........+. ++....++..++. +.|+||.+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 4799999999999999999999886 8888887653211 111 11111111111 1111123334444 89999999
Q ss_pred CCCCCCCC---Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 96 AGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 96 ag~~~~~g---~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
+|...... .+.. ..+..|+. +.+.+.+.+.+... +.++++|.
T Consensus 81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS 132 (257)
T PRK09291 81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS 132 (257)
T ss_pred CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence 98653211 1111 12333443 33444455544443 56666653
No 247
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.23 E-value=0.0046 Score=52.46 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+++|.|+||+|.+|..++..|..+|. +|.++++++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~ 40 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEE 40 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChh
Confidence 35899999999999999999999887 7999998764
No 248
>PRK08264 short chain dehydrogenase; Validated
Probab=97.23 E-value=0.0045 Score=52.66 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=63.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhC---CCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT---GMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~---~aDiVIi~a 96 (258)
++|.|+||+|.+|+.++..|+.+|. .+|++++++..+... ...... .+. ++....++.+.++ ..|+||.++
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~---~~~~~~-~~~~D~~~~~~~~~~~~~~~~id~vi~~a 81 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD---LGPRVV-PLQLDVTDPASVAAAAEAASDVTILVNNA 81 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh---cCCceE-EEEecCCCHHHHHHHHHhcCCCCEEEECC
Confidence 4799999999999999999998874 478999887542211 111100 111 1111122333333 589999999
Q ss_pred CCCCCCC----Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCC
Q 025075 97 GVPRKPG----MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 140 (258)
Q Consensus 97 g~~~~~g----~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPv 140 (258)
|....++ .+. .+.+..|+.-...+.+.+.+. ...+.++++|...
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 135 (238)
T PRK08264 82 GIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVL 135 (238)
T ss_pred CcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChh
Confidence 8732211 111 223445555444455444322 2345666666543
No 249
>PRK06914 short chain dehydrogenase; Provisional
Probab=97.22 E-value=0.0065 Score=53.14 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=31.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+.+.|+||+|.+|.+++..|+.+|. +|++++++..
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~ 38 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPE 38 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHH
Confidence 4689999999999999999999887 8999998764
No 250
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.22 E-value=0.012 Score=50.22 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=63.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEeC----CCchHhhhC------
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFLG----QPQLENALT------ 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~------ 87 (258)
++|.|+||+|.+|++++..|..+|. ++++...+.. . ....++.... ..+..+.. ..+++++++
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999987 7777765442 1 1111222211 12221111 112233333
Q ss_pred -CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075 88 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 138 (258)
Q Consensus 88 -~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 138 (258)
+.|+||.++|...... .+ -...+..|+.-...+.+.+.+. .+.+.++++|.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 6899999998642111 11 1223456655444445444433 24566776653
No 251
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.21 E-value=0.019 Score=49.83 Aligned_cols=156 Identities=16% Similarity=0.192 Sum_probs=92.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCC-------CchHhhhCCCCEE
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ-------PQLENALTGMDLV 92 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~-------~d~~~a~~~aDiV 92 (258)
-+.|+||++.+|.+++..|.+.|. .|+|..++.+ +..+.++.+.......-++... ..+.+.+...|++
T Consensus 8 v~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiL 85 (246)
T COG4221 8 VALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDIL 85 (246)
T ss_pred EEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEE
Confidence 477899999999999999999998 9999999876 3334444431110011111111 1123456789999
Q ss_pred EEcCCCCCCCCC------chhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075 93 IIPAGVPRKPGM------TRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 162 (258)
Q Consensus 93 Ii~ag~~~~~g~------~r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv 162 (258)
|..||..+-... +-.+++..|++-+ +.+.+.+.+. ..+.||+++.=.. +.. ||...+
T Consensus 86 vNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG-----------~~~-y~~~~v 152 (246)
T COG4221 86 VNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAG-----------RYP-YPGGAV 152 (246)
T ss_pred EecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEeccccc-----------ccc-CCCCcc
Confidence 999997543211 2234667787655 4445555544 3568888876444 122 778888
Q ss_pred EEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075 163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194 (258)
Q Consensus 163 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~G 194 (258)
++-|.--..-|-.-|-+.+ ..+.|++..|=
T Consensus 153 Y~ATK~aV~~fs~~LR~e~--~g~~IRVt~I~ 182 (246)
T COG4221 153 YGATKAAVRAFSLGLRQEL--AGTGIRVTVIS 182 (246)
T ss_pred chhhHHHHHHHHHHHHHHh--cCCCeeEEEec
Confidence 8765332222322332332 24677766553
No 252
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.21 E-value=0.0032 Score=55.56 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=45.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
||||+|||. |.+|..++..+...+ -..-+.++|++.++.. ++... +. ... .+|+++.+.++|+|+++++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~--~~a~~-~~--~~~---~~~~~ell~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAE--NLASK-TG--AKA---CLSIDELVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH--HHHHh-cC--Cee---ECCHHHHhcCCCEEEEcCC
Confidence 479999997 999999998887653 2334668888764322 22221 11 111 2456677799999999973
No 253
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.21 E-value=0.0042 Score=56.50 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+.+||+|||. |.+|.+++..|...|+ +|+.++.+..+... ..... .+.. .+..++++.||+|+++.
T Consensus 16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~--~A~~~---G~~~----~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSWK--KAEAD---GFEV----LTVAEAAKWADVIMILL 81 (330)
T ss_pred CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhHH--HHHHC---CCee----CCHHHHHhcCCEEEEcC
Confidence 3468999998 9999999999999887 88888775432211 11111 1111 25678999999999986
No 254
>PRK12939 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.0094 Score=50.86 Aligned_cols=115 Identities=14% Similarity=0.218 Sum_probs=64.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL------- 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------- 86 (258)
.+++.|+||+|.+|+.++..|...|. +|+++++++++. ...++..... .+..+. .-.| +.+.+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887 899998876421 2223322111 222111 1112 21222
Q ss_pred CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN 138 (258)
.+.|+||.++|...... .+. ...+..|..-...+.+.+.++ ...+.++++|.
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 47899999998643211 111 122445555444444444332 22456666654
No 255
>PRK06198 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.026 Score=48.59 Aligned_cols=116 Identities=15% Similarity=0.203 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL------- 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------- 86 (258)
.++|.|+||+|.+|..++..|...|. ..|++++++.... ...++... ...+..+. .-.+ +.+.+
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA-AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999998886 2399999875421 11122211 11221111 1112 22222
Q ss_pred CCCCEEEEcCCCCCCCC---Cchh---hHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g---~~r~---d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN 138 (258)
.+.|++|.++|...... .+.. ..+..|+.- ++...+.+.+....+.++++|.
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 36899999998653221 1222 224445443 3444455544433456666654
No 256
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=97.19 E-value=0.0019 Score=59.46 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=46.5
Q ss_pred CeEEEEcCCCchHHHHHHHHH-hCCCC-cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMK-INPLV-SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~-~~~~~-~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
+||+|+||+|.||+.+...|. ++.+- .+++++......+....+.... ..+.. .++ .+++++.|++++++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~--~~v~~---~~~-~~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-IDALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCc--ceEEc---Ccc-cccccCCCEEEEcCC
Confidence 489999999999999999888 55553 6888887654333322222111 12221 112 136899999999986
No 257
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.18 E-value=0.0037 Score=57.82 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=42.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.+||+|||.+|.+|..++..|.+.. ..+|..+|++ +. ...++++.+++||+||++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence 3599999988999999999998652 2388999873 10 1134567899999999996
No 258
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.18 E-value=0.0029 Score=52.35 Aligned_cols=93 Identities=26% Similarity=0.368 Sum_probs=59.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC-
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV- 98 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~- 98 (258)
..+|+|+|. |.+|+.++..|..-|. +|..||+...... ...+. ... ..++++.++.||+|+++...
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~----~~~l~ell~~aDiv~~~~plt 102 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVE----YVSLDELLAQADIVSLHLPLT 102 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEE----ESSHHHHHHH-SEEEE-SSSS
T ss_pred CCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----cce----eeehhhhcchhhhhhhhhccc
Confidence 469999998 9999999999998887 9999999764222 11111 111 13678999999999998632
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
+...+. + | ++. +.+..|++++||++-.
T Consensus 103 ~~T~~l-----i--~----~~~---l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 103 PETRGL-----I--N----AEF---LAKMKPGAVLVNVARG 129 (178)
T ss_dssp TTTTTS-----B--S----HHH---HHTSTTTEEEEESSSG
T ss_pred ccccee-----e--e----eee---eeccccceEEEeccch
Confidence 211121 1 1 122 3344578899998743
No 259
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.18 E-value=0.0088 Score=52.10 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=63.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC--CCchHhhh-------CCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG--QPQLENAL-------TGM 89 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~--~~d~~~a~-------~~a 89 (258)
++|.|+||+|.+|..++..|+..|. +|++.|++.+.. ...++.............. ..++.+.+ ...
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999998887 899999876421 1122222111101111111 11222222 357
Q ss_pred CEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCCC
Q 025075 90 DLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNPV 140 (258)
Q Consensus 90 DiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNPv 140 (258)
|++|.++|..... ..+.. ..+..|+.-...+.+.+.++ .+++.++++|.+.
T Consensus 88 D~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~ 146 (264)
T PRK07576 88 DVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ 146 (264)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 9999998753211 11221 23445555444444443322 1346777777643
No 260
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.18 E-value=0.0035 Score=57.15 Aligned_cols=71 Identities=21% Similarity=0.418 Sum_probs=47.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
++||+|+||+|.+|..++..|..+++ .-+|..+-.+...++.+++.. ..+.... .+ ..+++++|+||++.|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d--~~-~~~~~~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED--LT-TFDFSGVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee--CC-HHHHcCCCEEEECCC
Confidence 46999999999999999999988654 237777765544444443322 1222211 12 245689999999875
No 261
>PRK06181 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.013 Score=50.63 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=64.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhh-------C
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENAL-------T 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------~ 87 (258)
++|.|+||+|.+|..++..|+..|. +|++.|++..... ..++.... ..+..+.. -.| +.+++ .
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998886 8999998754221 22232221 12221111 112 22222 3
Q ss_pred CCCEEEEcCCCCCCCC---C-ch---hhHHHHhHHHHHHHHHHhhhhC--CCcEEEEecCCC
Q 025075 88 GMDLVIIPAGVPRKPG---M-TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPV 140 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g---~-~r---~d~~~~n~~i~~~i~~~i~~~~--p~a~viv~tNPv 140 (258)
+.|+||.++|...... . +. .+.+..|+.-...+.+.+.++- ..+.++++|...
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~ 139 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA 139 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 6899999998643221 1 11 1234556655555555543321 235666665543
No 262
>PRK07074 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0055 Score=52.84 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=31.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+++.|+||+|.+|..++..|+.+|. +|+++|++..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~ 37 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAA 37 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 3799999999999999999998886 8999998764
No 263
>PRK05876 short chain dehydrogenase; Provisional
Probab=97.17 E-value=0.0081 Score=52.84 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHhhh-------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENAL------- 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~a~------- 86 (258)
.+.+.|+||+|.+|.+++..|+..|. +|++.|++.... ...++..... .+..+. ...++.+.+
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34699999999999999999999987 899999876421 1222322111 121111 111222222
Q ss_pred CCCCEEEEcCCCCCCC---CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
...|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+.+..+.+++++.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3579999999864211 1122 223445544 44455555555544566766654
No 264
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=97.17 E-value=0.027 Score=48.54 Aligned_cols=37 Identities=32% Similarity=0.351 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.+.+++.|+||+|.+|.+++..|+..|. +|+++|+++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~ 42 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE 42 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence 3446899999999999999999999987 899999875
No 265
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.17 E-value=0.013 Score=50.54 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=82.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEE----eCCCchHhhh-------CCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----LGQPQLENAL-------TGM 89 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~----~~~~d~~~a~-------~~a 89 (258)
+++.|+||+|.+|..++..|+..|. +|++++++........+.... ..+..+ ....+..+.+ ...
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 4789999999999999999999987 899988754322111222111 111111 1111222222 357
Q ss_pred CEEEEcCCCCCCCC---Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075 90 DLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 159 (258)
Q Consensus 90 DiVIi~ag~~~~~g---~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~ 159 (258)
|++|.++|...... .+.. ..+..|+. +.+.+.+.+.+....+.|++++..... .+ .+.
T Consensus 85 D~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~-----------~~-~~~ 152 (251)
T PRK12481 85 DILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSF-----------QG-GIR 152 (251)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhc-----------CC-CCC
Confidence 99999998743211 1112 23444543 455556666554444677766653321 11 222
Q ss_pred CcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075 160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (258)
Q Consensus 160 ~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 193 (258)
.-.++.+..--..+-+.+|.++. +..|++..+
T Consensus 153 ~~~Y~asK~a~~~l~~~la~e~~--~~girvn~v 184 (251)
T PRK12481 153 VPSYTASKSAVMGLTRALATELS--QYNINVNAI 184 (251)
T ss_pred CcchHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence 22334433333445566677663 445554433
No 266
>PRK06841 short chain dehydrogenase; Provisional
Probab=97.16 E-value=0.004 Score=53.60 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.++|.|+||+|.+|.+++..|+++|. +|++.+++..
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~ 50 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSED 50 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35899999999999999999999887 8999998764
No 267
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.16 E-value=0.0097 Score=59.77 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=59.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
.||+|||+ |.+|.+++..|...|+..+|..+|+++++... ...... .. ....++.++++++|+||++...
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~--a~~~g~--~~---~~~~~~~~~~~~aDvVilavp~-- 73 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLEL--AVSLGV--ID---RGEEDLAEAVSGADVIVLAVPV-- 73 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHH--HHHCCC--CC---cccCCHHHHhcCCCEEEECCCH--
Confidence 58999997 99999999999988854479999998653211 111111 00 1124566789999999998631
Q ss_pred CCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEec
Q 025075 101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 137 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~t 137 (258)
..+.++++.+.++. ++.+++.++
T Consensus 74 --------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 74 --------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred --------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 12355555665553 455555444
No 268
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.16 E-value=0.053 Score=46.39 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+.++|.|+|++|++|.+++..|+..|. +|+++|++..
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~ 47 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEE 47 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHH
Confidence 345899999999999999999998886 8999998764
No 269
>PRK05650 short chain dehydrogenase; Provisional
Probab=97.16 E-value=0.01 Score=51.68 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=63.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENAL-------T 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~ 87 (258)
++|.|+||+|.+|..++..|...|. +|++.+++.+... ..++..... .+..+. .-.| +.+.+ .
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999987 8999998764221 122322111 111111 1112 22222 3
Q ss_pred CCCEEEEcCCCCCCC---CCchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075 88 GMDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~---g~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
..|++|.++|..... ..+.. ..+..|+ .+.+.+.+.+++.. .+.++++|.
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS 136 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS 136 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence 689999999864321 11111 2344554 34455555555543 345665654
No 270
>PRK06196 oxidoreductase; Provisional
Probab=97.15 E-value=0.0056 Score=54.87 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCchHhh-------hCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQLENA-------LTG 88 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~ 88 (258)
+.++|.|+||+|.+|.+++..|+..|. +|++.+++..+.. ..++.... .+. ++....++++. +..
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~Dl~d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVMLDLADLESVRAFAERFLDSGRR 99 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEccCCCHHHHHHHHHHHHhcCCC
Confidence 345799999999999999999999987 8999998764221 11222111 011 01111112121 246
Q ss_pred CCEEEEcCCCCCCCCC----chhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 89 MDLVIIPAGVPRKPGM----TRDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 89 aDiVIi~ag~~~~~g~----~r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
.|++|++||....+.. .-...+..|.. +.+.+.+.+.+.. .+.|+++|.
T Consensus 100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 156 (315)
T PRK06196 100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS 156 (315)
T ss_pred CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence 8999999986432211 11223444544 4566666666543 356666653
No 271
>PRK07060 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.0062 Score=51.92 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=63.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhh---CCCCEEEEc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENAL---TGMDLVIIP 95 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~---~~aDiVIi~ 95 (258)
.+++.|+||+|.+|.+++..|...|. +|++++++.+... ++........+. .+....++.+.+ ...|+||.+
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ 84 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAALD--RLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC 84 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence 35899999999999999999999887 8999998754221 121110000111 111111223333 347999999
Q ss_pred CCCCCCC---CCch---hhHHHHhHHHHHHHHHHhhhh----CCCcEEEEecC
Q 025075 96 AGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC----CPNATVNLISN 138 (258)
Q Consensus 96 ag~~~~~---g~~r---~d~~~~n~~i~~~i~~~i~~~----~p~a~viv~tN 138 (258)
+|..... ..+. .+.+..|+.-...+++.+.+. +..+.++++|.
T Consensus 85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 9864321 1111 223445655554455444432 22356666653
No 272
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.14 E-value=0.0028 Score=49.41 Aligned_cols=72 Identities=25% Similarity=0.313 Sum_probs=43.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHH---hcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI---SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl---~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|||+|+|++|.+|+.++..+.+.+-..=+..+|++.....-.|+ .... ...+. .++|+++.++.+|++|-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~---v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVP---VTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSB---EBS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Ccccc---cchhHHHhcccCCEEEEcC
Confidence 69999998899999999988884433335667776521111122 1111 11222 1367888899999887753
No 273
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.0032 Score=54.48 Aligned_cols=36 Identities=36% Similarity=0.340 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+++|.|+||+|.+|..++..|+..|. +|++.|++.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~ 37 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTD 37 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35899999999999999999999887 8999998754
No 274
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.14 E-value=0.0031 Score=52.66 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=49.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEe--CCCchHhhhCCCCEE
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFL--GQPQLENALTGMDLV 92 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~--~~~d~~~a~~~aDiV 92 (258)
..+.+++.|+|++|.+|..++..|...+. +|.+++++.++... .++.+. ....+.... ...++.++++++|+|
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~diV 101 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIKGADVV 101 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHhcCCEE
Confidence 33456999999889999999999988775 89999987643222 122211 111222111 112345788999998
Q ss_pred EEcCC
Q 025075 93 IIPAG 97 (258)
Q Consensus 93 Ii~ag 97 (258)
|.+..
T Consensus 102 i~at~ 106 (194)
T cd01078 102 FAAGA 106 (194)
T ss_pred EECCC
Confidence 88753
No 275
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.019 Score=49.63 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe----CCCchHhhh-------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL----GQPQLENAL------- 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~----~~~d~~~a~------- 86 (258)
.+++.|+||+|.+|.+++..|+..|. +|+++|++++. ....++........+..+. ...++.+.+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34799999999999999999999987 89999987642 1222332210111221111 111222222
Q ss_pred CCCCEEEEcCCCCCCC--C-Cchh---hHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKP--G-MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~--g-~~r~---d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN 138 (258)
...|++|.++|..... . .+.. ..+..|+.- .+.+.+.+.+. ..+.|+++|.
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS 145 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAS 145 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence 3689999999864211 1 1111 223445443 34445545443 3456666654
No 276
>PRK07574 formate dehydrogenase; Provisional
Probab=97.14 E-value=0.004 Score=57.86 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
..++|+|||. |.||+.++..|...|. +|..||+........ .. . .+.. ..++++.++.||+|+++...
T Consensus 191 ~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~---~~-~--g~~~---~~~l~ell~~aDvV~l~lPl 258 (385)
T PRK07574 191 EGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE---QE-L--GLTY---HVSFDSLVSVCDVVTIHCPL 258 (385)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH---hh-c--Ccee---cCCHHHHhhcCCEEEEcCCC
Confidence 3468999998 9999999999988777 899999865211111 10 0 1111 13578899999999998631
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN 141 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd 141 (258)
. + .+..++. .+.+....|.+++|+++ ..+|
T Consensus 259 t--~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD 290 (385)
T PRK07574 259 H--P---------ETEHLFD--ADVLSRMKRGSYLVNTARGKIVD 290 (385)
T ss_pred C--H---------HHHHHhC--HHHHhcCCCCcEEEECCCCchhh
Confidence 1 1 1111111 12333445788999886 4455
No 277
>PRK12742 oxidoreductase; Provisional
Probab=97.13 E-value=0.013 Score=49.72 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCc---hHhh---hCCCCEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA---LTGMDLVI 93 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d---~~~a---~~~aDiVI 93 (258)
.++|.|+||+|.+|..++..|...|. ++++.+..... ...++.... ........ .+| +.+. ....|++|
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~~D-~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQTD-SADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEecC-CCCHHHHHHHHHHhCCCcEEE
Confidence 45899999999999999999998887 78777653321 111111100 00111111 112 2222 23489999
Q ss_pred EcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 025075 94 IPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT 166 (258)
Q Consensus 94 i~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t 166 (258)
.++|...... .+. ...+..|+.-...++..+.++ .+.+.+++++.-... .. ..+....++.+
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~----------~~-~~~~~~~Y~~s 149 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD----------RM-PVAGMAAYAAS 149 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc----------cC-CCCCCcchHHh
Confidence 9998643211 111 223444554333333232222 234566655542210 01 13334445554
Q ss_pred eccHHHHHHHHHHHhCCCCCceeEEE
Q 025075 167 MLDVVRANTFVAEVLGLDPRDVDVPV 192 (258)
Q Consensus 167 ~lds~R~~~~la~~l~v~~~~v~~~v 192 (258)
......+-..++++++ +..+++.+
T Consensus 150 Kaa~~~~~~~la~~~~--~~gi~v~~ 173 (237)
T PRK12742 150 KSALQGMARGLARDFG--PRGITINV 173 (237)
T ss_pred HHHHHHHHHHHHHHHh--hhCeEEEE
Confidence 3333455666777764 33455433
No 278
>PLN00016 RNA-binding protein; Provisional
Probab=97.13 E-value=0.0037 Score=57.64 Aligned_cols=38 Identities=24% Similarity=0.133 Sum_probs=33.2
Q ss_pred CCCCeEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 18 AAGFKVAIL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 18 ~~~~KI~II----Ga~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++||.|+ ||+|++|++++..|...|+ +|.+++++..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~~ 91 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGKE 91 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCCc
Confidence 344689999 9999999999999999987 9999998764
No 279
>PRK07985 oxidoreductase; Provisional
Probab=97.13 E-value=0.025 Score=50.24 Aligned_cols=116 Identities=18% Similarity=0.134 Sum_probs=63.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hh-HHHHHhcCCCCCeEEEEe-CCCch---H-------hhh
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTGAVVRGFL-GQPQL---E-------NAL 86 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g-~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a~ 86 (258)
+++.|+||+|.+|.+++..|+..|. +|++.+++.. .. ...++.... ...+..+. .-+|. . +.+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999987 8888876542 11 111111111 11111111 11121 1 223
Q ss_pred CCCCEEEEcCCCCCC--C--CCch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCC
Q 025075 87 TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP 139 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 139 (258)
...|++|+.+|.... + ..+. ...+..|+.-...+++.+.++ ...+.||++|..
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~ 187 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI 187 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence 467999999986321 1 1122 234556665544455444433 134667776653
No 280
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.12 E-value=0.012 Score=50.14 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT 57 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~ 57 (258)
++++|.|+||+|.+|..++..|+..|. ++++. +++..
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~ 41 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEE 41 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHH
Confidence 345899999999999999999988886 77777 88754
No 281
>PRK06398 aldose dehydrogenase; Validated
Probab=97.12 E-value=0.0049 Score=53.56 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=78.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhh-------hCCCCEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA-------LTGMDLV 92 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~aDiV 92 (258)
.+++.|+||+|.+|.+++..|...|. +|++.+++........... ++ +....+++++ +...|++
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~----~D---~~~~~~i~~~~~~~~~~~~~id~l 76 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFK----VD---VSNKEQVIKGIDYVISKYGRIDIL 76 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEE----cc---CCCHHHHHHHHHHHHHHcCCCCEE
Confidence 35899999999999999999999887 8999998653211000000 00 0011122222 2468999
Q ss_pred EEcCCCCCCC---CCchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075 93 IIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 162 (258)
Q Consensus 93 Ii~ag~~~~~---g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv 162 (258)
|.++|.+... ..+.. ..+..|+. +.+.+.+.+.+. ..+.++++|.-... . ..+..-.
T Consensus 77 i~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~-----------~-~~~~~~~ 143 (258)
T PRK06398 77 VNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIASVQSF-----------A-VTRNAAA 143 (258)
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCcchhc-----------c-CCCCCch
Confidence 9999864321 11222 23455554 344445555433 34666666542220 1 1233334
Q ss_pred EEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075 163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (258)
Q Consensus 163 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 193 (258)
++.+...-..+-+.++.+++ +. |++..+
T Consensus 144 Y~~sKaal~~~~~~la~e~~--~~-i~vn~i 171 (258)
T PRK06398 144 YVTSKHAVLGLTRSIAVDYA--PT-IRCVAV 171 (258)
T ss_pred hhhhHHHHHHHHHHHHHHhC--CC-CEEEEE
Confidence 44433223345566677764 22 554444
No 282
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.11 E-value=0.003 Score=57.80 Aligned_cols=72 Identities=24% Similarity=0.439 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+.+||+||||+|.+|+.+...|...+.+ .+|.++......|+.+.+... .+.... .|. +.++++|+||+++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~~-~~~~~~Divf~a~ 76 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AKI-NSFEGVDIAFFSA 76 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CCH-HHhcCCCEEEECC
Confidence 3479999999999999999999854432 468888766544554433221 222211 232 4578999999987
Q ss_pred C
Q 025075 97 G 97 (258)
Q Consensus 97 g 97 (258)
+
T Consensus 77 ~ 77 (347)
T PRK06728 77 G 77 (347)
T ss_pred C
Confidence 5
No 283
>PRK05855 short chain dehydrogenase; Validated
Probab=97.11 E-value=0.014 Score=56.21 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=69.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh----
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENAL---- 86 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~---- 86 (258)
+.+.+++.|+||+|.+|.+++..|+..|. +|++.+++..... ..++..... .+..+. .-+| +.+.+
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHH
Confidence 34446899999999999999999999987 7999998764221 122222111 111111 1112 22222
Q ss_pred ---CCCCEEEEcCCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCC
Q 025075 87 ---TGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 87 ---~~aDiVIi~ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
...|++|.+||...... .+.. ..+..|+ ...+.+.+.+.+.+..+.|+++|.-
T Consensus 388 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~ 453 (582)
T PRK05855 388 AEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASA 453 (582)
T ss_pred HhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence 24799999999753221 1221 2344554 3445555666665556777777653
No 284
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.11 E-value=0.0053 Score=53.26 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+|.+|.+++..|+..|. +|++.|++.+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~ 40 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSAA 40 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35899999999999999999999987 8999998754
No 285
>PRK07832 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.036 Score=48.32 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=63.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCC-e-EE-EEeCCCch-------HhhhCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGA-V-VR-GFLGQPQL-------ENALTG 88 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~-~-v~-~~~~~~d~-------~~a~~~ 88 (258)
+++.|+||+|.+|..++..|+..|. +|++++++.+. ....++....... . +. ++....++ .+.+..
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 3799999999999999999999886 79999987642 1122222211110 1 11 11100111 122346
Q ss_pred CCEEEEcCCCCCCCC---Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCC
Q 025075 89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPV 140 (258)
Q Consensus 89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPv 140 (258)
.|++|.++|...... .+. ...+..|+.-. +.+.+.+.+....+.+++++...
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~ 140 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA 140 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 899999998643211 121 22345555543 33444444333346677666543
No 286
>PLN02712 arogenate dehydrogenase
Probab=97.09 E-value=0.0092 Score=59.33 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC-CCCEEEEcC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA 96 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVIi~a 96 (258)
.+++||+|||. |.+|.+++..|...|. +|..||++.....+.++ . +.. ..++++.++ ++|+||++.
T Consensus 367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~---~~~~~el~~~~aDvVILav 433 (667)
T PLN02712 367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSY---FSDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeE---eCCHHHHHhcCCCEEEECC
Confidence 35679999997 9999999999988886 89999987532111111 1 111 235556565 599999996
No 287
>PRK07109 short chain dehydrogenase; Provisional
Probab=97.09 E-value=0.018 Score=52.27 Aligned_cols=114 Identities=14% Similarity=0.092 Sum_probs=64.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhh-------h
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~ 86 (258)
.++|.|+||+|.+|..++..|+..|. +|++++++++. ....++..... .+..+. .-+| ++++ +
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 45799999999999999999999987 89999987642 11222322111 111111 1112 2222 2
Q ss_pred CCCCEEEEcCCCCCCC--C-Cchh---hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKP--G-MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~--g-~~r~---d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
...|++|.++|..... . .+.. ..+..| +...+.+.+.+.+.. .+.+|+++.
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS 144 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS 144 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence 3689999999864211 1 1111 122333 445556666665543 356666654
No 288
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.09 E-value=0.017 Score=49.57 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHh-------hh
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LEN-------AL 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a~ 86 (258)
.++|.|+||+|.+|.+++..|+.+|. +|++.|+++... ...++..... .+..+. .-+| ++. .+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLGR--RALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhCC--ceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999997 899999876421 1122221111 111111 1112 222 12
Q ss_pred CCCCEEEEcCCCCCC--C--CCch---hhHHHHhHHHHHHHHHHhhhhC--CCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~i~~~i~~~i~~~~--p~a~viv~tN 138 (258)
...|+||+++|.... + ..+. .+.+..|+.-...+.+.+.++- ..+.++++|.
T Consensus 81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS 141 (258)
T PRK07890 81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS 141 (258)
T ss_pred CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 468999999986422 1 1122 2234555554445555544321 1246666654
No 289
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=97.08 E-value=0.012 Score=50.14 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+.++|.|+||+|.+|.+++..|..+|. +|++++++..
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~ 41 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGD 41 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 345899999999999999999998887 8999998754
No 290
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.06 E-value=0.014 Score=49.46 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.++++|.|+||+|.+|+.++..|.++|. ++.+.....
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~ 40 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD 40 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 3456899999999999999999999887 666655443
No 291
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.06 E-value=0.0032 Score=57.38 Aligned_cols=63 Identities=25% Similarity=0.369 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..++|+|||. |.+|+.++..|. ..|. +|..+|....... .. .+. ...++++++++||+|+++.
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~~---~~~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YVD---YKDTIEEAVEGADIVTLHM 208 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hcc---ccCCHHHHHHhCCEEEEeC
Confidence 3469999998 999999999884 3454 8999997653211 11 011 1246788999999999986
No 292
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=97.06 E-value=0.011 Score=50.68 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
++|.|+||+|++|+.++..|..+|. +|++++++..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~ 36 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEA 36 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 4799999999999999999998887 8999998764
No 293
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=97.05 E-value=0.011 Score=53.19 Aligned_cols=115 Identities=14% Similarity=0.071 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhhC-----
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENALT----- 87 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~~----- 87 (258)
++++|.|+||+|.+|.+++..|+..|. +|++.+++..+.. ..++... ...+..+. .-.| +.+.++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 345799999999999999999999886 8999998764221 2223211 11122111 1112 222232
Q ss_pred --CCCEEEEcCCCCCC----CCCch---hhHHHHhHH----HHHHHHHHhhhhCC-CcEEEEec
Q 025075 88 --GMDLVIIPAGVPRK----PGMTR---DDLFNINAG----IVRTLCEGIAKCCP-NATVNLIS 137 (258)
Q Consensus 88 --~aDiVIi~ag~~~~----~g~~r---~d~~~~n~~----i~~~i~~~i~~~~p-~a~viv~t 137 (258)
..|++|..||.... ...+. ...+..|+. +.+.+.+.+.+... .+.|+++|
T Consensus 81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 48999999986321 11121 233455654 44555555555432 34566555
No 294
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.04 E-value=0.0032 Score=61.92 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCch---H-hhhCCCCEEEEc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---E-NALTGMDLVIIP 95 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~---~-~a~~~aDiVIi~ 95 (258)
..+|.|+|. |.+|+.++..|...++ +++.+|.|+++-+ .+.+...+ +- +-..++. + ..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~v~--~~~~~g~~--v~-~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISAVN--LMRKYGYK--VY-YGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHHHH--HHHhCCCe--EE-EeeCCCHHHHHhcCCccCCEEEEE
Confidence 368999998 9999999999998887 8999999875322 22222211 11 1111221 1 236799999998
Q ss_pred CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHH
Q 025075 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 174 (258)
Q Consensus 96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~ 174 (258)
.+.. +.|. .++..+++..|+..++. +.||.+ .+.+++.+ .+.++-=+..-+.++-
T Consensus 472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~G---a~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVE------AHELLQAG---VTQFSRETFSSALELG 527 (601)
T ss_pred eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhCC---CCEEEccHHHHHHHHH
Confidence 5311 2333 35566778889976554 567765 23445543 3455433433345555
Q ss_pred HHHHHHhCCCCCcee
Q 025075 175 TFVAEVLGLDPRDVD 189 (258)
Q Consensus 175 ~~la~~l~v~~~~v~ 189 (258)
...=..+|+++++++
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 556677788877763
No 295
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.04 E-value=0.0033 Score=60.23 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC----CCCCeEEEEeCCCchHhhhCC---C
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTGAVVRGFLGQPQLENALTG---M 89 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~----~~~~~v~~~~~~~d~~~a~~~---a 89 (258)
+..+++|++||- |.+|+.++..|+..|+ +|..||++.++... +.+. ... .+ ....++++.++. +
T Consensus 3 ~~~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k~~~--l~~~~~~~Ga~-~~---~~a~s~~e~v~~l~~~ 73 (493)
T PLN02350 3 SAALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDE--TVERAKKEGNL-PL---YGFKDPEDFVLSIQKP 73 (493)
T ss_pred CCCCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHHHHH--HHHhhhhcCCc-cc---ccCCCHHHHHhcCCCC
Confidence 345679999997 9999999999999998 99999997653322 2211 110 11 112355666654 9
Q ss_pred CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCC
Q 025075 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP 139 (258)
Q Consensus 90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 139 (258)
|+||++... + +.++++...+... .|..++|..||-
T Consensus 74 dvIi~~v~~----~-----------~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 74 RSVIILVKA----G-----------APVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CEEEEECCC----c-----------HHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 999998621 1 1223333334443 466677777664
No 296
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.04 E-value=0.0067 Score=53.71 Aligned_cols=72 Identities=22% Similarity=0.196 Sum_probs=46.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEE-EEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEE
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 94 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi 94 (258)
+++++||+|||. |.+|..++..|... +-. +|+ ++|+++++.. ++.... . ... ..+++++.++++|+|++
T Consensus 3 ~m~~irIGIIG~-G~IG~~~a~~L~~~~~~~-el~aV~dr~~~~a~--~~a~~~-g-~~~---~~~~~eell~~~D~Vvi 73 (271)
T PRK13302 3 SRPELRVAIAGL-GAIGKAIAQALDRGLPGL-TLSAVAVRDPQRHA--DFIWGL-R-RPP---PVVPLDQLATHADIVVE 73 (271)
T ss_pred CCCeeEEEEECc-cHHHHHHHHHHHhcCCCe-EEEEEECCCHHHHH--HHHHhc-C-CCc---ccCCHHHHhcCCCEEEE
Confidence 356689999998 99999999888763 222 554 8888764322 222111 0 001 12456777899999999
Q ss_pred cCC
Q 025075 95 PAG 97 (258)
Q Consensus 95 ~ag 97 (258)
+++
T Consensus 74 ~tp 76 (271)
T PRK13302 74 AAP 76 (271)
T ss_pred CCC
Confidence 974
No 297
>PRK07023 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0025 Score=54.56 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
||+|.|+||+|.+|..++..|+..|. +|++++++..
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~~ 36 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSRH 36 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCcc
Confidence 56999999999999999999998887 8999998754
No 298
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.018 Score=49.22 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=31.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+++.|+||+|.+|.+++..|...|. +|++.+++..
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~ 37 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTD 37 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence 4799999999999999999998886 8999998764
No 299
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.03 E-value=0.012 Score=50.38 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=28.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~ 55 (258)
++|.|+||+|.+|++++..|...|. +|++.+.+
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ 38 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence 4799999999999999999998886 77776543
No 300
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.016 Score=51.52 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=31.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
++|.|+||+|.+|..++..|+..|. +|++.+++.+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~ 75 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA--TVVAVARRED 75 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH
Confidence 5799999999999999999999887 8999998764
No 301
>PRK05693 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.0059 Score=53.34 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
|+++.|+||+|.+|..++..|...|. +|++.+++..
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~ 36 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY--EVWATARKAE 36 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35799999999999999999998887 8999998753
No 302
>PRK07825 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.0044 Score=54.07 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=64.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCch-------HhhhCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQL-------ENALTGM 89 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~-------~~a~~~a 89 (258)
.++|.|+||+|.+|..++..|+..|. .|++.+++++... ..++.... .+. ++....++ .+.+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVV---GGPLDVTDPASFAAFLDAVEADLGPI 79 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccce---EEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 35899999999999999999999887 7999998764221 11221110 000 01111111 1223568
Q ss_pred CEEEEcCCCCCCCC---Cc---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075 90 DLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 90 DiVIi~ag~~~~~g---~~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
|++|.++|...... .+ -...+..|+. ..+.+.+.+.+.+ .+.|+++|.-
T Consensus 80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~ 138 (273)
T PRK07825 80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVASL 138 (273)
T ss_pred CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCc
Confidence 99999998743211 11 1223455554 4445555555433 4567666643
No 303
>PRK06701 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.023 Score=50.40 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=67.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcCCCCCeEEEEeC----CCchHhhh------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLG----QPQLENAL------ 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~----~~d~~~a~------ 86 (258)
.++|.|+||+|.+|++++..|+..|. +|++++++... .....+.... ..+..+.. ..++.+.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999887 89999987531 1111222111 11211111 11222222
Q ss_pred -CCCCEEEEcCCCCCC--C--CCch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCC
Q 025075 87 -TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP 139 (258)
Q Consensus 87 -~~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 139 (258)
...|+||.++|.... + ..+. ...+..|+.-...+.+.+.++ .+.+.+|++|.-
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~ 183 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI 183 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence 357999999986321 1 1111 234667777666666666553 345566666653
No 304
>PRK06057 short chain dehydrogenase; Provisional
Probab=97.01 E-value=0.009 Score=51.56 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+.++|.|+||+|.+|.+++..|+..|. +|+++|++..
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~~ 42 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDPE 42 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence 345899999999999999999999887 8999998764
No 305
>PLN02780 ketoreductase/ oxidoreductase
Probab=97.01 E-value=0.0086 Score=54.14 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=31.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
..+.|+||+|.+|.+++..|+.+|. +|++++++++
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~ 88 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPD 88 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHH
Confidence 4789999999999999999999987 8999999875
No 306
>PRK06128 oxidoreductase; Provisional
Probab=97.01 E-value=0.044 Score=48.74 Aligned_cols=115 Identities=22% Similarity=0.222 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh----hHHHHHhcCCCCCeEEEEe-CCC---chHhh------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFL-GQP---QLENA------ 85 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~----g~~~dl~~~~~~~~v~~~~-~~~---d~~~a------ 85 (258)
.++|.|+||+|.+|.+++..|+..|. +|++.+++... .....+..... ....+. .-. +++++
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEGR--KAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999887 78887765421 11112222111 111111 011 12222
Q ss_pred -hCCCCEEEEcCCCCCCCC----Cc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075 86 -LTGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 138 (258)
Q Consensus 86 -~~~aDiVIi~ag~~~~~g----~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN 138 (258)
+...|++|.++|.....+ .+ -...+..|+.-...+++.+.++- +.+.|++++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 346899999998642111 12 23356667766666666665542 3456766654
No 307
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=97.01 E-value=0.012 Score=50.52 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.+++.|+||+|.+|+.++..|...|. +++++|++.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 35899999999999999999999887 899998865
No 308
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.00 E-value=0.0056 Score=56.09 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.++||+|+||+|.+|..+...|..+++ ..+|..+......++..+... ..+.. . ..+ .++++++|+||++++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v-~-~~~-~~~~~~~D~vf~a~p 78 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTV-E-ELT-EDSFDGVDIALFSAG 78 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEE-E-eCC-HHHHcCCCEEEECCC
Confidence 457999999999999999988887543 347776655443344332221 12221 1 122 256799999999875
No 309
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.00 E-value=0.021 Score=49.27 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.++|.|+||+|.+|..++..|+..|. .|++++++.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~ 49 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT 49 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35899999999999999999999887 899998873
No 310
>PRK12746 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.027 Score=48.34 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=61.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC------
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------ 87 (258)
++|.|+||+|.+|++++..|..+|. ++.+. +++.+. ....++.... ..+..+. .-.| +.++++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999998886 67665 444321 1111222111 1111111 1112 222222
Q ss_pred -------CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075 88 -------GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 138 (258)
Q Consensus 88 -------~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN 138 (258)
+.|++|+++|...... .+. ...+..|+.-...+.+.+.++. ..+.++++|.
T Consensus 83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 5899999998643211 111 2234566666555656555442 2345665554
No 311
>PRK07454 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.012 Score=50.26 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+++++.|+|++|.+|..++..|+.+|. +|+++++++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~ 41 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQD 41 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 456899999999999999999999887 8999998764
No 312
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.99 E-value=0.0079 Score=53.94 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=48.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+....||+|+|+ |.+|..++..|...|. +|..+|++...... ...... .. . ...++.+.++++|+||.+.
T Consensus 149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~--~~~~G~--~~--~-~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 149 TIHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLAR--ITEMGL--SP--F-HLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHH--HHHcCC--ee--e-cHHHHHHHhCCCCEEEECC
Confidence 334579999998 9999999999998885 89999997642111 111111 11 1 1135667889999999986
No 313
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.99 E-value=0.019 Score=49.43 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=63.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhh-------hC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENA-------LT 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~~ 87 (258)
+++.|+||+|.+|.+++..|+..|. +|++.+++.+.. ...++.+.. ..+..+.. -+| +.++ +.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999987 899999876422 122232211 11211111 111 2222 24
Q ss_pred CCCEEEEcCCCCCCC---CCchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEec
Q 025075 88 GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~t 137 (258)
..|++|.++|..... ..+.. +.+..|+. +.+.+.+.+.+....+.+++++
T Consensus 86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 789999999864321 11211 23345544 3444445554444345666554
No 314
>PRK12743 oxidoreductase; Provisional
Probab=96.99 E-value=0.052 Score=46.82 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=28.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~ 55 (258)
.+|.|+||+|.+|.+++..|+..|. +|++.+..
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~ 35 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHS 35 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence 4799999999999999999999987 78777543
No 315
>PLN03139 formate dehydrogenase; Provisional
Probab=96.98 E-value=0.0061 Score=56.67 Aligned_cols=98 Identities=21% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
..++|+|||. |.||+.++..|..-|. +|..||+........ .+. .+.. ..++++.+++||+|+++..
T Consensus 198 ~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~lP- 264 (386)
T PLN03139 198 EGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINTP- 264 (386)
T ss_pred CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeCC-
Confidence 3468999998 9999999999987776 899999864211111 111 1111 2367889999999999852
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN 141 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd 141 (258)
..+ + +..++. .+.+....|.+++|+++ ..+|
T Consensus 265 -lt~-~--------T~~li~--~~~l~~mk~ga~lIN~aRG~iVD 297 (386)
T PLN03139 265 -LTE-K--------TRGMFN--KERIAKMKKGVLIVNNARGAIMD 297 (386)
T ss_pred -CCH-H--------HHHHhC--HHHHhhCCCCeEEEECCCCchhh
Confidence 111 1 111221 13344445889999886 4455
No 316
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.98 E-value=0.0099 Score=50.72 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
..||+|+|+ |.+|+.++..|+..|. +++.++|.+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 348999998 9999999999999886 6899999883
No 317
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.015 Score=51.71 Aligned_cols=116 Identities=23% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhh-------h
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENA-------L 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~ 86 (258)
.++|.|+||+|.+|.+++..|+..|. +|++.+++.+... ..++........+..+.. -.| +.+. +
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 35799999999999999999999887 8999998764221 122321110112221111 112 2222 2
Q ss_pred CCCCEEEEcCCCCCCCC-Cc---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKPG-MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g-~~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN 138 (258)
...|++|++||....+. .+ -...+..|+.- .+.+.+.+++.. .+.|+++|.
T Consensus 94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 152 (306)
T PRK06197 94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS 152 (306)
T ss_pred CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence 35899999998632221 11 12234455443 666666666543 356666653
No 318
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.98 E-value=0.0065 Score=53.20 Aligned_cols=123 Identities=18% Similarity=0.216 Sum_probs=77.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCCC--h------hHHHHHhcCCCCCeEEEEeCC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVNT--P------GVTADISHMDTGAVVRGFLGQ 79 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~----~~~-----~ei~L~D~~~~--~------g~~~dl~~~~~~~~v~~~~~~ 79 (258)
+-+..||.+.|| |..|..++.+|... |+- +++.|+|.+.- . .....+.+...+... .
T Consensus 22 ~l~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~-----~ 95 (255)
T PF03949_consen 22 KLSDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKD-----W 95 (255)
T ss_dssp -GGG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT-------
T ss_pred CHHHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccccc-----c
Confidence 344469999998 99999998877654 773 68999998641 1 112223333221111 1
Q ss_pred CchHhhhCCC--CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC--CcHHHHHHHHHHhC
Q 025075 80 PQLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAG 155 (258)
Q Consensus 80 ~d~~~a~~~a--DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd--~~~~i~t~~~~~~~ 155 (258)
.++.|+++++ |++|=+.|.+ |- +-+++++.|.+++++.+|+-.|||.. -.++ +-+++
T Consensus 96 ~~L~eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p---eda~~-- 156 (255)
T PF03949_consen 96 GSLLEAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTP---EDAYE-- 156 (255)
T ss_dssp SSHHHHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H---HHHHH--
T ss_pred cCHHHHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCCcccCCH---HHHHh--
Confidence 4789999999 9988776533 31 13789999999999999999999987 5443 33444
Q ss_pred CCCCCcE-EEE
Q 025075 156 TYDPKKL-LGV 165 (258)
Q Consensus 156 ~~~~~kv-iG~ 165 (258)
+...++ |++
T Consensus 157 -~t~g~ai~At 166 (255)
T PF03949_consen 157 -WTDGRAIFAT 166 (255)
T ss_dssp -TTTSEEEEEE
T ss_pred -hCCceEEEec
Confidence 334454 465
No 319
>PRK12827 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.027 Score=47.92 Aligned_cols=117 Identities=17% Similarity=0.267 Sum_probs=65.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHH----HHHhcCCCCCeEEEEeC----CCchHhhh--
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT----ADISHMDTGAVVRGFLG----QPQLENAL-- 86 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~----~dl~~~~~~~~v~~~~~----~~d~~~a~-- 86 (258)
+.++|.|+||+|++|..++..|+.+|. ++++++.... .... .++.... ..+..+.. ..++.+.+
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAG--GKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999999887 8888876432 1111 1121111 11211111 11122222
Q ss_pred -----CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhh----hhCCCcEEEEecCC
Q 025075 87 -----TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISNP 139 (258)
Q Consensus 87 -----~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~----~~~p~a~viv~tNP 139 (258)
...|.||.++|...... .+. ...+..|..-...+++.+. +......+++++..
T Consensus 81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~ 148 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASV 148 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 46899999998643211 111 2245667776666666665 12223445555543
No 320
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.97 E-value=0.015 Score=50.09 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=31.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+++.|+||+|.+|.+++..|+..|. +|++.|++..
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~ 44 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGA--EIIINDITAE 44 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHH
Confidence 4799999999999999999999887 8999998764
No 321
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=96.97 E-value=0.022 Score=48.20 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=64.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe--CCCchHhhh-------CCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL--GQPQLENAL-------TGMD 90 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~--~~~d~~~a~-------~~aD 90 (258)
|.|+|++|.+|+.++..|..+|. +|.+.+++.. . ....++.+........... ...++.+.+ ...|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999887 8999987642 1 1222232221111111111 111222333 3469
Q ss_pred EEEEcCCCCCCC---CC---chhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCC
Q 025075 91 LVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 140 (258)
Q Consensus 91 iVIi~ag~~~~~---g~---~r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPv 140 (258)
+||+++|..... +. .-.+.+..|+.....+.+.+.++ ...+.++++|...
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 137 (239)
T TIGR01830 79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV 137 (239)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 999999864211 11 12334567777666666666543 2234666666543
No 322
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.014 Score=52.48 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+.+++.|+||++.+|..++..|+..|. +|++.+++.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~ 49 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRA 49 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 345899999999999999999999886 8999998765
No 323
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.97 E-value=0.011 Score=48.80 Aligned_cols=33 Identities=39% Similarity=0.587 Sum_probs=29.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
||+|+|+ |.+|+.++..|+..|. +++.|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6899998 9999999999999886 6899999875
No 324
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.95 E-value=0.023 Score=48.16 Aligned_cols=116 Identities=20% Similarity=0.284 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcCCCCCeEEEEe-CCCc---hHhh------
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL-GQPQ---LENA------ 85 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~~~~~~v~~~~-~~~d---~~~a------ 85 (258)
+.++|.|+|++|++|++++..|...|. +|++...+... ....++.... ..+..+. .-.| +.++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998886 77666665431 1111222111 1111111 1111 2222
Q ss_pred -hCCCCEEEEcCCCCCCCC---Cchh---hHHHHhHHHHHHHHHHhhhhC---CCcEEEEecC
Q 025075 86 -LTGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLISN 138 (258)
Q Consensus 86 -~~~aDiVIi~ag~~~~~g---~~r~---d~~~~n~~i~~~i~~~i~~~~---p~a~viv~tN 138 (258)
+.+.|.||+++|...... .+.. ..+..|+.....+.+.+.++. +...++++|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss 142 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS 142 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 236899999998643211 1111 234456665555665555442 2345555554
No 325
>PRK07904 short chain dehydrogenase; Provisional
Probab=96.95 E-value=0.014 Score=50.68 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCh-h--HHHHHhcCCCCCeEEEE--eC--CCchHhhh-----
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP-G--VTADISHMDTGAVVRGF--LG--QPQLENAL----- 86 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~-g--~~~dl~~~~~~~~v~~~--~~--~~d~~~a~----- 86 (258)
.++|.|+||+|.+|.+++..|+.+| . .|++.+++... . ...++..... ..+..+ .. ..+.++.+
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 3479999999999999999988875 5 89999987642 1 1223322111 012111 11 11211112
Q ss_pred -CCCCEEEEcCCCCCCCCCc---h---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 87 -TGMDLVIIPAGVPRKPGMT---R---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 87 -~~aDiVIi~ag~~~~~g~~---r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
.+.|++|.++|........ . .+.+..|+. +.+.+.+.+.+.+. +.++++|.
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS 146 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS 146 (253)
T ss_pred cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence 2799999998875322111 1 123555654 33556667666543 45555543
No 326
>PLN02996 fatty acyl-CoA reductase
Probab=96.95 E-value=0.023 Score=54.58 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=65.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCC--h-hHHH--HHhcC---------C---C----CCeEEEEeC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--P-GVTA--DISHM---------D---T----GAVVRGFLG 78 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~--~-g~~~--dl~~~---------~---~----~~~v~~~~~ 78 (258)
+.|.|+||+|++|++++..|+.. +-+..|+++.+... . .+.+ ++... . . ..++..+.+
T Consensus 12 k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~G 91 (491)
T PLN02996 12 KTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVPG 91 (491)
T ss_pred CeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEec
Confidence 37999999999999999877653 44567888776542 1 0110 11110 0 0 023333322
Q ss_pred C----------Cc-hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh
Q 025075 79 Q----------PQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 127 (258)
Q Consensus 79 ~----------~d-~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~ 127 (258)
. .+ +++.++++|+||++|+... ......+....|+.....+++...+.
T Consensus 92 Dl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 150 (491)
T PLN02996 92 DISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC 150 (491)
T ss_pred ccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11 3456689999999987543 22334556778999999998888765
No 327
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.95 E-value=0.0073 Score=51.41 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=31.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
||+.|+||+|.+|++++..|...|. +|++++++.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~~ 35 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARRD 35 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 5899999999999999999998887 8999998754
No 328
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.94 E-value=0.0091 Score=51.79 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+|.+|.+++..|+..|. +|++.|++..
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~~ 44 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHGG 44 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence 35799999999999999999999987 8999998764
No 329
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0022 Score=58.13 Aligned_cols=75 Identities=25% Similarity=0.221 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCC--CeEEEEeCCCchHh-hhCCCCEEEEc
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG--AVVRGFLGQPQLEN-ALTGMDLVIIP 95 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~--~~v~~~~~~~d~~~-a~~~aDiVIi~ 95 (258)
+|+||+|+||+|..|.-+...|...+.+ |+.++...+..+..+.-.|.... ..+... +.|.++ ..++||+||++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence 4679999999999999999999988766 58888776534443322333221 112211 122233 24569999998
Q ss_pred C
Q 025075 96 A 96 (258)
Q Consensus 96 a 96 (258)
.
T Consensus 78 l 78 (349)
T COG0002 78 L 78 (349)
T ss_pred c
Confidence 4
No 330
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.93 E-value=0.064 Score=46.24 Aligned_cols=114 Identities=14% Similarity=0.210 Sum_probs=64.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCC---chHhhh-------CCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENAL-------TGM 89 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~---d~~~a~-------~~a 89 (258)
+.+.|+|++|.+|.+++..|+..|. +|+++|.........++.... ..+..+. .-+ ++.+.+ ...
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 86 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGHI 86 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999887 888888755322222232211 1111111 111 222222 368
Q ss_pred CEEEEcCCCCCCC---CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075 90 DLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 90 DiVIi~ag~~~~~---g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN 138 (258)
|++|.++|..... ..+. .+.+..|+.- .+.+.+.+.+.++.+.++++|.
T Consensus 87 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 87 DILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 9999999864311 1111 2334555543 3444555544445577776664
No 331
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.92 E-value=0.008 Score=54.41 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.+||+|||+ |.+|.+++..|...|+ +++.++....... ..+... .+.. .+..+++++||+|+++.
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~----Gv~~----~s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATED----GFKV----GTVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHC----CCEE----CCHHHHHhcCCEEEEeC
Confidence 358999998 9999999999999887 6666554332111 111111 1111 23567899999999997
No 332
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.012 Score=50.29 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCCch----------HhhhCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL----------ENALTG 88 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~~ 88 (258)
.++|.|+||+|.+|.+++..|...|. +|++.+++.+... ++.... ...+..+. ...|. .+.+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLE--AARAEL-GESALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHH--HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999999987 8999998753211 111100 01111111 11121 122346
Q ss_pred CCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEec
Q 025075 89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLIS 137 (258)
Q Consensus 89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~t 137 (258)
.|+||.++|...... .+. ...+..|+.-...+.+.+.++ ...+.+++++
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~ 136 (249)
T PRK06500 81 LDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG 136 (249)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 899999998643211 122 234566776666666666543 1223444444
No 333
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=96.92 E-value=0.032 Score=55.63 Aligned_cols=129 Identities=21% Similarity=0.238 Sum_probs=69.9
Q ss_pred HHhHHhhcC---CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-C---
Q 025075 8 RQAKCRAKG---GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-G--- 78 (258)
Q Consensus 8 ~~~~~~~~~---~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~--- 78 (258)
++++-+... +.+.+++.|+||+|.+|.+++..|...|. +|++.|++.... ...++........+..+. .
T Consensus 399 e~~kl~~~~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd 476 (676)
T TIGR02632 399 EEAKLRRMPKEKTLARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD 476 (676)
T ss_pred hHHhhccCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 555554432 22335799999999999999999999887 899999876421 112222110000111111 1
Q ss_pred CCchHhhhC-------CCCEEEEcCCCCCCCC---Cchhh---HHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075 79 QPQLENALT-------GMDLVIIPAGVPRKPG---MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 79 ~~d~~~a~~-------~aDiVIi~ag~~~~~g---~~r~d---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
..++.++++ +.|++|.++|...... .+..+ .+..|+ .+.+...+.+.+.+..+.++++|.
T Consensus 477 ~~~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS 553 (676)
T TIGR02632 477 EQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS 553 (676)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 112233333 6899999998643211 11111 122333 234556666665554555655543
No 334
>PLN02928 oxidoreductase family protein
Probab=96.92 E-value=0.0047 Score=56.63 Aligned_cols=103 Identities=24% Similarity=0.189 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHh--cCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~--~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.++|+|||. |.+|+.++..|...|. +|..||+.........+. ...............++++.++.||+|+++..
T Consensus 159 gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP 235 (347)
T PLN02928 159 GKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT 235 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence 469999998 9999999999988787 999999863211111110 00000000000012368899999999999863
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
. .+ .+ ..++. .+.+.+..|.+++|+++=
T Consensus 236 l--t~-~T--------~~li~--~~~l~~Mk~ga~lINvaR 263 (347)
T PLN02928 236 L--TK-ET--------AGIVN--DEFLSSMKKGALLVNIAR 263 (347)
T ss_pred C--Ch-Hh--------hcccC--HHHHhcCCCCeEEEECCC
Confidence 2 11 11 11111 233444468899999873
No 335
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=96.91 E-value=0.0098 Score=59.07 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEc
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIP 95 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ 95 (258)
.+.|||.|+||+|++|++++..|...|+ ++... . .|+.+. ..+...++ +.|+||++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~------------~~v~~~i~~~~pd~Vih~ 435 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDR------------SSLLADIRNVKPTHVFNA 435 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccH------------HHHHHHHHhhCCCEEEEC
Confidence 3457999999999999999999988775 55211 0 011110 01112232 68999999
Q ss_pred CCCCCCCC-----CchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075 96 AGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 130 (258)
Q Consensus 96 ag~~~~~g-----~~r~d~~~~n~~i~~~i~~~i~~~~p~ 130 (258)
|+....+. ....+.+..|+.....+++.+.+.+..
T Consensus 436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~ 475 (668)
T PLN02260 436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL 475 (668)
T ss_pred CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe
Confidence 97543221 134566788999999999999987653
No 336
>PRK06138 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.019 Score=49.04 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+|.+|..++..|+..|. +|++++++.+
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~ 40 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAE 40 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHH
Confidence 35899999999999999999998886 8999998764
No 337
>PRK07577 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.012 Score=49.78 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=31.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
++|.|+||+|.+|..++..|...|. +|++++++..
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~~ 38 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGH--QVIGIARSAI 38 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence 5899999999999999999999886 8999998754
No 338
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.90 E-value=0.0029 Score=57.80 Aligned_cols=72 Identities=21% Similarity=0.386 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
+|+||+|+||+|.+|.-+...|.++++ ..+|..+...+..|+.+.+.. . .+.. .. .+. ++++++|+||++.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~--~--~l~~-~~-~~~-~~~~~vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG--K--NLRV-RE-VDS-FDFSQVQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC--c--ceEE-ee-CCh-HHhcCCCEEEEcCC
Confidence 457999999999999999999986433 347777755443444333322 1 1221 11 122 34789999999864
No 339
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.90 E-value=0.0033 Score=57.56 Aligned_cols=76 Identities=24% Similarity=0.287 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
+|+||+|+||+|.+|..++..|...+.++-+.+.|. ...++.+.-.+........ .+. ..+. .+.+++|+|+++..
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~~~~~~~~~~~~~~~~-~~~~-~~~~~vD~Vf~alP 77 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLSDVHPHLRGLVDLVLE-PLDP-EILAGADVVFLALP 77 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchHHhCcccccccCceee-cCCH-HHhcCCCEEEECCC
Confidence 357999999999999999988887654433455663 3222221111111110000 111 1121 25678999999764
No 340
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.89 E-value=0.06 Score=46.98 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+|.+|.+++..|+..|. +|+++|++.+
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~ 45 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQE 45 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35799999999999999999999887 8999998764
No 341
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.89 E-value=0.017 Score=49.66 Aligned_cols=117 Identities=12% Similarity=0.156 Sum_probs=65.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe----CCCchHhhh------
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL----GQPQLENAL------ 86 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~----~~~d~~~a~------ 86 (258)
+.++|.|+||+|.+|+.++..|...|. +|++++++.+. ....++..... .+..+. ...++..++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999998887 89999997642 11222322111 111111 111222222
Q ss_pred -CCCCEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHH----HHhhhhCCCcEEEEecCCC
Q 025075 87 -TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLC----EGIAKCCPNATVNLISNPV 140 (258)
Q Consensus 87 -~~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~----~~i~~~~p~a~viv~tNPv 140 (258)
...|++|.++|..... ..+.. ..+..|+.-...+. +.+.+. ..+.+++++...
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~ss~~ 149 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ-GYGRIIAITSIA 149 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEeech
Confidence 3468999999864221 11111 23555655444444 444333 345677666543
No 342
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.01 Score=50.15 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhh---hC--CCCEEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA---LT--GMDLVI 93 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a---~~--~aDiVI 93 (258)
|+++.|+|++|.+|++++..|+..|. +|+++|++.+... ++...... .+. ++....++++. +. ..|+||
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~~--~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~d~vi 75 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAALA--ALQALGAE-ALALDVADPASVAGLAWKLDGEALDAAV 75 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHHH--HHHhccce-EEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence 35789999999999999999988886 8999998754222 22221111 111 11111122221 23 479999
Q ss_pred EcCCCCCC---C--CCch---hhHHHHhHHHHHHHHHHhhhhC--CCcEEEEecCC
Q 025075 94 IPAGVPRK---P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP 139 (258)
Q Consensus 94 i~ag~~~~---~--g~~r---~d~~~~n~~i~~~i~~~i~~~~--p~a~viv~tNP 139 (258)
+++|.... + ..+. ...+..|+.-...+.+.+.++- ..+.+++++..
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~ 131 (222)
T PRK06953 76 YVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR 131 (222)
T ss_pred ECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence 99986421 1 1122 2345566665555555544321 23455555443
No 343
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.88 E-value=0.0084 Score=52.73 Aligned_cols=69 Identities=12% Similarity=0.225 Sum_probs=45.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh------CC-CCEEEE
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL------TG-MDLVII 94 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~-aDiVIi 94 (258)
||.|+||+|++|++++..|...|+ +|....+++...... .... ... .+....++.+++ ++ +|.|++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~~---~~~~-~~~-d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAGP---NEKH-VKF-DWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccCC---CCcc-ccc-cCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 589999999999999999998887 899998876421100 0000 001 111223455666 67 999998
Q ss_pred cCC
Q 025075 95 PAG 97 (258)
Q Consensus 95 ~ag 97 (258)
+++
T Consensus 74 ~~~ 76 (285)
T TIGR03649 74 VAP 76 (285)
T ss_pred eCC
Confidence 764
No 344
>PRK08589 short chain dehydrogenase; Validated
Probab=96.88 E-value=0.035 Score=48.53 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCe-EE-EEeCCCchHhh-------hCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAV-VR-GFLGQPQLENA-------LTGM 89 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~-v~-~~~~~~d~~~a-------~~~a 89 (258)
.+++.|+||+|.+|.+++..|+..|. +|++.++++. .....++.+...... +. ++....++.+. +...
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 83 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV 83 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 35799999999999999999999887 8999998732 112223322111101 11 11111112222 2357
Q ss_pred CEEEEcCCCCCCCC----Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075 90 DLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 90 DiVIi~ag~~~~~g----~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
|++|.++|.....+ .+. ...+..|+. +.+.+.+.+.+. .+.+++++..
T Consensus 84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~ 142 (272)
T PRK08589 84 DVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF 142 (272)
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence 99999998753221 111 122334443 445555555443 3677766653
No 345
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.88 E-value=0.018 Score=52.11 Aligned_cols=123 Identities=19% Similarity=0.305 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHh----C-CCCcEEEEEeCCCC-hh---HHHHHh---cCC--------CCCeEEEEe
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKI----N-PLVSVLHLYDVVNT-PG---VTADIS---HMD--------TGAVVRGFL 77 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~----~-~~~~ei~L~D~~~~-~g---~~~dl~---~~~--------~~~~v~~~~ 77 (258)
+.+.||+|||+ |..|++++..+.. . -...+|.+|-..+. .+ ...|.- |.. .+..+.
T Consensus 19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~Nvv--- 94 (372)
T KOG2711|consen 19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVV--- 94 (372)
T ss_pred cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeE---
Confidence 34579999997 9999999987654 2 12246777765443 22 222221 111 122222
Q ss_pred CCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCc-----HHHHHHHH
Q 025075 78 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST-----VPIAAEVF 151 (258)
Q Consensus 78 ~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~-----~~i~t~~~ 151 (258)
..+|+.++++|||++|+.. | ...+.+++++|..+- |++..|..+--+++- ..++++.+
T Consensus 95 Av~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI 158 (372)
T KOG2711|consen 95 AVPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQII 158 (372)
T ss_pred ecchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHH
Confidence 3579999999999999975 2 122456777777663 666666654333310 12556666
Q ss_pred HHhCCCCCC
Q 025075 152 KKAGTYDPK 160 (258)
Q Consensus 152 ~~~~~~~~~ 160 (258)
.+..+.|-.
T Consensus 159 ~~~lgI~~~ 167 (372)
T KOG2711|consen 159 HRALGIPCS 167 (372)
T ss_pred HHHhCCCce
Confidence 555556544
No 346
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.87 E-value=0.011 Score=50.04 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=30.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.||.|+|+ |.+|+.++..|+..|. ++|.++|.+.
T Consensus 22 ~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 48999998 9999999999999885 6999999873
No 347
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=96.87 E-value=0.027 Score=48.10 Aligned_cols=114 Identities=12% Similarity=0.199 Sum_probs=61.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Ch--hHHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP--GVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 86 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------- 86 (258)
+++.|+||+|.+|++++..|+..|. ++++.+... .. ....++.+.. ..+..+.. -.| +.+++
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNHF 82 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999998886 676654432 21 1112332211 12221111 112 22223
Q ss_pred CCCCEEEEcCCCCCCCCC------chhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075 87 TGMDLVIIPAGVPRKPGM------TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g~------~r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN 138 (258)
...|+||+++|....... .-.+.+..|+.-...+.+.+..+ ...+.+++++.
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 347999999986432211 11234556666555555554432 23456666654
No 348
>PRK09186 flagellin modification protein A; Provisional
Probab=96.86 E-value=0.0099 Score=51.07 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.++|.|+||+|.+|.+++..|...|. +|++.+++.+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~ 39 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKE 39 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChH
Confidence 35899999999999999999999887 8999988764
No 349
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.85 E-value=0.022 Score=48.99 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+.++|.|+||+|.+|.+++..|...|. +|++.+++.+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~~ 44 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRVE 44 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 346899999999999999999998887 8999998764
No 350
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.85 E-value=0.0059 Score=56.51 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEE-EeCCCchHhhhCCCCEEEEcC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVIi~a 96 (258)
.++.||+|+|+ |.+|...+..+...|. +|..+|++.++... +... +...+.. .....++.+.++++|+||.++
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~--l~~~-~g~~v~~~~~~~~~l~~~l~~aDvVI~a~ 238 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLRQ--LDAE-FGGRIHTRYSNAYEIEDAVKRADLLIGAV 238 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHH--HHHh-cCceeEeccCCHHHHHHHHccCCEEEEcc
Confidence 34568999998 9999999999988886 79999987643221 1111 1111111 111234667889999999998
Q ss_pred CCCC
Q 025075 97 GVPR 100 (258)
Q Consensus 97 g~~~ 100 (258)
+.+.
T Consensus 239 ~~~g 242 (370)
T TIGR00518 239 LIPG 242 (370)
T ss_pred ccCC
Confidence 6543
No 351
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.85 E-value=0.017 Score=49.98 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+|.+|+.++..|...|. +|++++++..
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~ 41 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPE 41 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHH
Confidence 35899999999999999999999887 8999998753
No 352
>PRK09242 tropinone reductase; Provisional
Probab=96.84 E-value=0.054 Score=46.66 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=31.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+++.|+||+|.+|..++..|...|. +|++.+++.+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~ 44 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGA--DVLIVARDAD 44 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence 4799999999999999999999887 8999998764
No 353
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.84 E-value=0.018 Score=54.01 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=63.9
Q ss_pred HhHHhhcCC-CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075 9 QAKCRAKGG-AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQLENAL 86 (258)
Q Consensus 9 ~~~~~~~~~-~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~~~d~~~a~ 86 (258)
.++.|..+. ....+|+|+|+ |.+|..++..+...|. +|+.+|+++.+.. +.. . .+ .. .++++++
T Consensus 190 ~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~--~-G~--~~------~~~~e~v 255 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAM--E-GY--EV------MTMEEAV 255 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHh--c-CC--EE------ccHHHHH
Confidence 445555432 23458999998 9999999999988886 7888999875322 211 1 11 11 1235788
Q ss_pred CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHH-hhhhCCCcEEEEecCC
Q 025075 87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG-IAKCCPNATVNLISNP 139 (258)
Q Consensus 87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~-i~~~~p~a~viv~tNP 139 (258)
+++|+||.+.|.+ .++. .. +....|.+++++++.+
T Consensus 256 ~~aDVVI~atG~~---------------~~i~---~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 256 KEGDIFVTTTGNK---------------DIIT---GEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred cCCCEEEECCCCH---------------HHHH---HHHHhcCCCCcEEEEeCCC
Confidence 9999999987522 1111 22 3334578899998875
No 354
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.84 E-value=0.016 Score=54.58 Aligned_cols=101 Identities=19% Similarity=0.145 Sum_probs=63.3
Q ss_pred HhHHhhcCC-CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC
Q 025075 9 QAKCRAKGG-AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT 87 (258)
Q Consensus 9 ~~~~~~~~~-~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~ 87 (258)
.++++..+. ....+|+|+|. |.+|..++..|...|. +|+.+|+++.+.... ..+ .+ .+ .+++++++
T Consensus 200 ~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G~--~v------~~l~eal~ 266 (425)
T PRK05476 200 DGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-GF--RV------MTMEEAAE 266 (425)
T ss_pred HHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-CC--Ee------cCHHHHHh
Confidence 344444332 24458999998 9999999999998887 899999987532211 111 11 11 13568899
Q ss_pred CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075 88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
++|+||.+.|.+ .++. .+.+....+.+++++++-+
T Consensus 267 ~aDVVI~aTG~~---------------~vI~--~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 267 LGDIFVTATGNK---------------DVIT--AEHMEAMKDGAILANIGHF 301 (425)
T ss_pred CCCEEEECCCCH---------------HHHH--HHHHhcCCCCCEEEEcCCC
Confidence 999998876421 1111 1223333477899888744
No 355
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=96.84 E-value=0.04 Score=46.74 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=44.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCCc------hHhhhCCCCEEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLVI 93 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~d------~~~a~~~aDiVI 93 (258)
|+|.|+||+|.+|..++..|+.++..-.+.+.+++.... ..+. .+..+. .-+| +.+.+...|++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~~----~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQHD----NVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cccC----ceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998875322566666544211 1111 111111 0111 223356899999
Q ss_pred EcCCCCC
Q 025075 94 IPAGVPR 100 (258)
Q Consensus 94 i~ag~~~ 100 (258)
+++|...
T Consensus 73 ~~aG~~~ 79 (235)
T PRK09009 73 NCVGMLH 79 (235)
T ss_pred ECCcccc
Confidence 9999753
No 356
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.83 E-value=0.038 Score=47.96 Aligned_cols=118 Identities=15% Similarity=0.231 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhh-------
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENA------- 85 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a------- 85 (258)
+.+++.|+|++|.+|.+++..|+..|. ++++.+++.+.. ...++.... ..+..+. .-+| ++++
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345799999999999999999999887 799998876421 122232211 1121111 1112 1222
Q ss_pred hCCCCEEEEcCCCCCC-C-CCchh----hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 86 LTGMDLVIIPAGVPRK-P-GMTRD----DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 86 ~~~aDiVIi~ag~~~~-~-g~~r~----d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
+...|++|.++|.... + ..... ..+..|+. +.+.+.+.+.+ ...+.|++++....
T Consensus 85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~ 149 (265)
T PRK07097 85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMMS 149 (265)
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCccc
Confidence 2347999999986321 1 11111 22334443 33344444543 34567777766443
No 357
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.83 E-value=0.008 Score=52.75 Aligned_cols=68 Identities=25% Similarity=0.241 Sum_probs=44.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
||||+|+|++|.+|+.++..+...+-+.-+.++|.+....... ... .+. ..+|+++.++++|+||.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----~~~--~i~---~~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----GAL--GVA---ITDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----CCC--Ccc---ccCCHHHhccCCCEEEECC
Confidence 4799999977999999998777644343455688776422111 111 111 2357777788999999654
No 358
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.83 E-value=0.0057 Score=55.58 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..+++|||+ |..|...+..+.....+++|.+||++.++.. ..++.+ ....+.. ..+.++++++||+|+.+.
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~--~g~~v~~---~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD--YEVPVRA---ATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--hCCcEEE---eCCHHHHhccCCEEEEec
Confidence 468999997 9999987766655444689999999876432 223332 1112222 246789999999999875
No 359
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.83 E-value=0.0057 Score=54.45 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=55.2
Q ss_pred HHHHhHHhhc--CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCCeEEEEeCCCc
Q 025075 6 CLRQAKCRAK--GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFLGQPQ 81 (258)
Q Consensus 6 ~~~~~~~~~~--~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~~v~~~~~~~d 81 (258)
=|.+..++.- ++.+..++.|+|+ |.++.++++.|...|. .+|.+++++.++++.+ ++... ..+..+....+
T Consensus 109 G~~~~l~~~~~~~~~~~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~---~~~~~~~~~~~ 183 (282)
T TIGR01809 109 GIAGALANIGKFEPLAGFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQV---GVITRLEGDSG 183 (282)
T ss_pred HHHHHHHhhCCccccCCceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhc---Ccceeccchhh
Confidence 3666665532 1234568999998 9999999999998885 5899999876544332 22111 11111111123
Q ss_pred hHhhhCCCCEEEEcCCC
Q 025075 82 LENALTGMDLVIIPAGV 98 (258)
Q Consensus 82 ~~~a~~~aDiVIi~ag~ 98 (258)
+.+.+.++|+||.|...
T Consensus 184 ~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 184 GLAIEKAAEVLVSTVPA 200 (282)
T ss_pred hhhcccCCCEEEECCCC
Confidence 33556899999998643
No 360
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.82 E-value=0.0059 Score=58.19 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=58.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC-CCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
+|+|||. |.+|.+++..|+..|+ +|.+||+++++... +... .....+.......++.+.++.+|+||++.-
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~~~~--l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~--- 72 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEKTDE--FLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK--- 72 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHHHHH--HHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence 4899997 9999999999999998 89999998653322 2221 000011111111122234467999999862
Q ss_pred CCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075 101 KPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 138 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 138 (258)
++. .+.++.+.+..+ .|+.++|-.+|
T Consensus 73 -~~~-----------~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 73 -AGA-----------PVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred -CcH-----------HHHHHHHHHHhhCCCCCEEEECCC
Confidence 222 123344455444 36677887876
No 361
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.82 E-value=0.0012 Score=61.07 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=45.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhc-CCCCCeEEEEeC--CCchHhhhCCCCEEEEcCCC
Q 025075 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLG--QPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~--~~d~~~a~~~aDiVIi~ag~ 98 (258)
|.|+|+ |.+|+.++..|.+.+...+|++.|++..+...+ ... ............ ..++.+.++++|+||.++|.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERL-AEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH-HT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH-HhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999 999999999999887656899999987543322 111 111111111111 12366789999999999864
No 362
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.04 Score=47.35 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=82.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------T 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~ 87 (258)
+++.|+||+|.+|..++..|+..|. +|++.++++... ...++.+... .+..+. .-.| +++.+ .
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999887 899999876421 1223332211 121111 1111 22222 3
Q ss_pred CCCEEEEcCCCCC--CC--CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075 88 GMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 156 (258)
Q Consensus 88 ~aDiVIi~ag~~~--~~--g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~ 156 (258)
..|++|.++|... .+ ..+. ...+..|+. ..+.+.+.+.+.. .+.+++++..... .. +
T Consensus 83 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS~~~~----------~~-~ 150 (254)
T PRK07478 83 GLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTSTFVGH----------TA-G 150 (254)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEechHhh----------cc-C
Confidence 6899999998632 12 1122 233555654 4455555555443 3456655542220 00 1
Q ss_pred CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075 157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193 (258)
Q Consensus 157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 193 (258)
.+..-.++.+..-...+-..++++++ +..|++.++
T Consensus 151 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v 185 (254)
T PRK07478 151 FPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL 185 (254)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence 33333444443333456666777764 345654433
No 363
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.81 E-value=0.083 Score=45.47 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.++|.|+||+|.+|.+++..|...|. ++++.|++..
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~ 46 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINAD 46 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHH
Confidence 46899999999999999999999887 8999988654
No 364
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.81 E-value=0.022 Score=48.86 Aligned_cols=112 Identities=17% Similarity=0.284 Sum_probs=63.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhh-------hCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENA-------LTG 88 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~~~ 88 (258)
++.|+|++|.+|..++..|.+.|. +|++++++.... ...++.... ..+..+.. -.| +.++ +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999887 899999875321 112232211 11221111 112 2222 235
Q ss_pred CCEEEEcCCCCCC-C--CCchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEec
Q 025075 89 MDLVIIPAGVPRK-P--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 89 aDiVIi~ag~~~~-~--g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~t 137 (258)
.|+||.++|.... + +.+.. ..+..|+. +++.+.+.+++.+..+.++++|
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7999999986321 1 12222 23444543 3445556666555556666554
No 365
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.0074 Score=51.12 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
|+++.|+|++|.+|+.++..|+..|. +|+++|+++.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~ 36 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW--QVTATVRGPQ 36 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCCc
Confidence 35799999999999999999999887 8999999865
No 366
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.80 E-value=0.0088 Score=54.69 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
..||+|||+ |.+|++++..|+..|+ ++|.|+|.|.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 358999998 9999999999999986 6999999875
No 367
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.80 E-value=0.0097 Score=53.07 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=54.9
Q ss_pred HHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCC-eEEEEeCCCch
Q 025075 6 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGA-VVRGFLGQPQL 82 (258)
Q Consensus 6 ~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~-~v~~~~~~~d~ 82 (258)
=|.+..++...+.+.+++.|+|| |..+.++++.|...|. .+|.++|++.++++.+ ++.. .... .+... ...++
T Consensus 113 Gf~~~L~~~~~~~~~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~-~~~~~~~~~~-~~~~~ 188 (283)
T PRK14027 113 GFGRGMEEGLPNAKLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINN-AVGREAVVGV-DARGI 188 (283)
T ss_pred HHHHHHHhcCcCcCCCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhh-ccCcceEEec-CHhHH
Confidence 36677765332344568999998 9999999999998875 5899999987544332 2221 1111 11111 11122
Q ss_pred HhhhCCCCEEEEcCC
Q 025075 83 ENALTGMDLVIIPAG 97 (258)
Q Consensus 83 ~~a~~~aDiVIi~ag 97 (258)
.+.+.++|+||.+..
T Consensus 189 ~~~~~~~divINaTp 203 (283)
T PRK14027 189 EDVIAAADGVVNATP 203 (283)
T ss_pred HHHHhhcCEEEEcCC
Confidence 345678999999853
No 368
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.80 E-value=0.0024 Score=54.81 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh------h---HHHHHhcCC-CCC------eEEEEeCCCchH
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------G---VTADISHMD-TGA------VVRGFLGQPQLE 83 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~------g---~~~dl~~~~-~~~------~v~~~~~~~d~~ 83 (258)
.-||+|+|. |.+|++.|..++..|+ +|.|||+-+.+ . +..+|+... ... .+..+++++++.
T Consensus 3 ~~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 358999995 9999999999999999 99999997631 1 112233221 111 122245678899
Q ss_pred hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcH
Q 025075 84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV 144 (258)
Q Consensus 84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~ 144 (258)
|..++|=.+=-|+ .+.+...+.+.+++.+.. |+.++ .|..+..|-
T Consensus 80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~mp 125 (313)
T KOG2305|consen 80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTTIL--ASSTSTFMP 125 (313)
T ss_pred HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCceEE--eccccccCh
Confidence 9999885543332 223455677888888875 55443 555555443
No 369
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.79 E-value=0.03 Score=49.73 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCCC----hh----HHHHHhcCCCCCeEEEEeCC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVNT----PG----VTADISHMDTGAVVRGFLGQ 79 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~----~~~-----~ei~L~D~~~~----~g----~~~dl~~~~~~~~v~~~~~~ 79 (258)
+.+..||.|.|| |.-|..++.+|... |+- +.++++|.+-- +. ....+.+.. . . ...
T Consensus 22 ~l~d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~-~----~~~ 94 (279)
T cd05312 22 PLSDQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E-E----KEG 94 (279)
T ss_pred ChhhcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C-c----ccC
Confidence 444569999998 99999999877553 652 58999998741 11 111222211 1 1 113
Q ss_pred CchHhhhC--CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 80 PQLENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 80 ~d~~~a~~--~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
.++.++++ ++|++|=+.+.+ |- +-+++.+.|.+++++.+|+-.|||..
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 57899999 999987765432 31 12678899999999999999999985
No 370
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.021 Score=49.73 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=66.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEE----eCCCchHhhh------CC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGF----LGQPQLENAL------TG 88 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~----~~~~d~~~a~------~~ 88 (258)
+.+.|+||+|.+|.+++..|+..|. +|++.|++.+.. ...++.... ...+..+ ....++++.+ ..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 3689999999999999999999987 899999876421 122232211 1111111 1111222333 25
Q ss_pred CCEEEEcCCCCCCC---CCchh---hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075 89 MDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 89 aDiVIi~ag~~~~~---g~~r~---d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
.|++|.++|.+... ..+.. ..+..| +...+.+.+.+++.. .+.||++|..
T Consensus 86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~ 145 (263)
T PRK08339 86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV 145 (263)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence 89999999865321 11222 223334 445677777776543 4667666653
No 371
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.75 E-value=0.02 Score=54.49 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
...+|+|+|. |.+|..++..+...|. +|..+|+++.+.... ..+ .+ .+ .+++++++.+|+||.+.|.
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A-~~~-G~--~~------~~leell~~ADIVI~atGt 319 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQA-AME-GY--QV------VTLEDVVETADIFVTATGN 319 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHH-Hhc-Cc--ee------ccHHHHHhcCCEEEECCCc
Confidence 3458999998 9999999999988887 899998876432111 111 11 11 2457889999999998652
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
+ + ++. .+.+....|.+++++++-.
T Consensus 320 ~---~------------iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 320 K---D------------IIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred c---c------------ccC--HHHHhccCCCcEEEEcCCC
Confidence 1 1 111 1234444588999998765
No 372
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0034 Score=54.21 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.++|.|+||+|.+|+.++..|+..|. +|++.+++..
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~ 44 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRP 44 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChh
Confidence 35899999999999999999999887 8999998753
No 373
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.75 E-value=0.0081 Score=53.65 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
...+|+|+|+ |.+|..++..|...|. +|.++|++..+... ...... ..+. ..++.+.++++|+||.+.
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~~~--~~~~g~----~~~~-~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADLAR--ITEMGL----IPFP-LNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHCCC----eeec-HHHHHHHhccCCEEEECC
Confidence 3458999998 9999999999998886 89999987642111 111111 1111 135667889999999986
No 374
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.75 E-value=0.012 Score=52.66 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=54.3
Q ss_pred HHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcC---CCCCeEEEEeCC--
Q 025075 6 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM---DTGAVVRGFLGQ-- 79 (258)
Q Consensus 6 ~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~---~~~~~v~~~~~~-- 79 (258)
=|.+..++...+.+..++.|+|| |..+.++++.|...|. .+|.+++++.+ ...+.+|.+. .....+......
T Consensus 110 Gf~~~l~~~~~~~~~k~vlvlGa-GGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~ 187 (288)
T PRK12749 110 GHIRAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQ 187 (288)
T ss_pred HHHHHHHhcCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhh
Confidence 36677765433334458999998 9999999998888775 58999999853 1122222211 111122221110
Q ss_pred CchHhhhCCCCEEEEcCC
Q 025075 80 PQLENALTGMDLVIIPAG 97 (258)
Q Consensus 80 ~d~~~a~~~aDiVIi~ag 97 (258)
..+.+++.++|+||.+..
T Consensus 188 ~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 188 QAFAEALASADILTNGTK 205 (288)
T ss_pred hhhhhhcccCCEEEECCC
Confidence 012346778999999853
No 375
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.73 E-value=0.047 Score=49.77 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=73.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhhhCC-CCEEEEcCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTG-MDLVIIPAGV 98 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~-aDiVIi~ag~ 98 (258)
.+|+|+|+ |.+|......+...|. +|+.+|+++++ ..+.+|. ....+.. . ..|..+++++ +|++|.+++
T Consensus 168 ~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lG---Ad~~i~~-~-~~~~~~~~~~~~d~ii~tv~- 238 (339)
T COG1064 168 KWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLG---ADHVINS-S-DSDALEAVKEIADAIIDTVG- 238 (339)
T ss_pred CEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhC---CcEEEEc-C-CchhhHHhHhhCcEEEECCC-
Confidence 49999998 9888877777766774 99999998763 2333332 1112221 1 1233344444 999999985
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC-CCcHHHHHHHHHHhCCCCCCcEEEE---eeccHHHHH
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NSTVPIAAEVFKKAGTYDPKKLLGV---TMLDVVRAN 174 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv-d~~~~i~t~~~~~~~~~~~~kviG~---t~lds~R~~ 174 (258)
+ ..+-..++-..+++.++.+.+|- ..+..+- .+... +...+|.|. +..|+..+.
T Consensus 239 ~------------------~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~--~~~li--~~~~~i~GS~~g~~~d~~e~l 296 (339)
T COG1064 239 P------------------ATLEPSLKALRRGGTLVLVGLPGGGPIPLLP--AFLLI--LKEISIVGSLVGTRADLEEAL 296 (339)
T ss_pred h------------------hhHHHHHHHHhcCCEEEEECCCCCcccCCCC--HHHhh--hcCeEEEEEecCCHHHHHHHH
Confidence 2 11222333344889999999994 4322110 11111 345678888 445554444
Q ss_pred HHHH
Q 025075 175 TFVA 178 (258)
Q Consensus 175 ~~la 178 (258)
.+.+
T Consensus 297 ~f~~ 300 (339)
T COG1064 297 DFAA 300 (339)
T ss_pred HHHH
Confidence 4443
No 376
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.064 Score=46.40 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=64.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCch---Hh-------hhC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQL---EN-------ALT 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~~ 87 (258)
+.+.|+||+|.+|.+++..|+..|. +|++.+++.++ ....++........+..+. .-.|. .+ .+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999887 89999997642 1122232211111222111 11121 11 124
Q ss_pred CCCEEEEcCCCCCCCC---Cchh---hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecC
Q 025075 88 GMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g---~~r~---d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
..|++|.++|...... .+.. ..+..| +...+.+.+.+++.. .+.|+++|.
T Consensus 87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS 146 (265)
T PRK07062 87 GVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS 146 (265)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence 5799999998643211 1111 122233 334566666665543 456666654
No 377
>PRK12744 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.077 Score=45.74 Aligned_cols=33 Identities=18% Similarity=0.045 Sum_probs=27.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~ 55 (258)
+++.|+||+|.+|.+++..|...|. ++++++.+
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~ 41 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYN 41 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC--cEEEEecC
Confidence 5899999999999999999998886 66666543
No 378
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.045 Score=47.04 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=63.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhh-------hC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENA-------LT 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~ 87 (258)
+++.|+||+|.+|.+++..|...|. .|++.|++.... ...++.... ..+..+. .-+| +++. +.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999887 899999876421 122232211 1222111 1112 2221 24
Q ss_pred CCCEEEEcCCCCCC-C--CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEec
Q 025075 88 GMDLVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 88 ~aDiVIi~ag~~~~-~--g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~t 137 (258)
..|++|.++|.... + ..+. ...+..|+. +.+.+.+.+.+....+.++++|
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is 137 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 137 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 67999999875321 1 1222 223455544 4444444444434456777766
No 379
>PRK08324 short chain dehydrogenase; Validated
Probab=96.73 E-value=0.016 Score=57.88 Aligned_cols=115 Identities=20% Similarity=0.263 Sum_probs=64.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCC--CchHhhh-------CCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQ--PQLENAL-------TGM 89 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~--~d~~~a~-------~~a 89 (258)
++|.|+||+|.+|..++..|...|. +|+++|++..... ..++... ..........+ .++.+++ .+.
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5899999999999999999998887 8999999864211 1122221 01011111111 1122223 368
Q ss_pred CEEEEcCCCCCCCC---Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 90 DLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 90 DiVIi~ag~~~~~g---~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
|+||.++|...... .+.. ..+..|+. +++...+.+++....+.+++++.
T Consensus 500 DvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 500 DIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 99999998643221 1111 12344444 34444555555443466666654
No 380
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.73 E-value=0.0072 Score=54.39 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
...+|+|||+ |..|...+..+.. .+ +.+|.+||++.++.+ +.++... ...+. ..+++++++++|+||.+
T Consensus 124 ~~~~v~IiGa-G~qa~~~~~al~~~~~-~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVita 195 (304)
T PRK07340 124 PPGDLLLIGT-GVQARAHLEAFAAGLP-VRRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTA 195 (304)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEc
Confidence 3468999997 9999999988765 44 469999999875333 2233321 11222 24677899999999987
Q ss_pred CC
Q 025075 96 AG 97 (258)
Q Consensus 96 ag 97 (258)
..
T Consensus 196 T~ 197 (304)
T PRK07340 196 TT 197 (304)
T ss_pred cC
Confidence 54
No 381
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.72 E-value=0.02 Score=49.39 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=62.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhh-------CCCCEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENAL-------TGMDLV 92 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~-------~~aDiV 92 (258)
+++.|+||+|.+|..++..|...|. +|++.+.+... ...++.+.... .+. ++....++.+++ ...|++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~~~-~~~~Dl~~~~~~~~~~~~~~~~~~~id~l 83 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAEN-EAKELREKGVF-TIKCDVGNRDQVKKSKEVVEKEFGRVDVL 83 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcHH-HHHHHHhCCCe-EEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5799999999999999999999886 78777654321 11122221110 111 111111222222 367999
Q ss_pred EEcCCCCCCC---CCchh---hHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075 93 IIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 93 Ii~ag~~~~~---g~~r~---d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN 138 (258)
|.++|..... ..+.. ..+..|+.- .+.+.+.+.+.. .+.++++|.
T Consensus 84 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS 138 (255)
T PRK06463 84 VNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIAS 138 (255)
T ss_pred EECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence 9999874321 11221 234445443 566666665433 456666654
No 382
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.71 E-value=0.045 Score=47.14 Aligned_cols=114 Identities=14% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCCCCCeEEEEeC----CCchHhhhC-------
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLG----QPQLENALT------- 87 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~----~~d~~~a~~------- 87 (258)
.+++.|+||+|.+|..++..|+++|. ++++.++++.... ..++..... .+..+.. ..++...++
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQP--RAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999887 7888888764222 122322111 1111111 112223332
Q ss_pred CCCEEEEcCCCCCCCCC--c---hhhHHHHhHHHHHHHHHHhhhhC--CCcEEEEec
Q 025075 88 GMDLVIIPAGVPRKPGM--T---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLIS 137 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g~--~---r~d~~~~n~~i~~~i~~~i~~~~--p~a~viv~t 137 (258)
..|+||.++|....... . -.+.+..|+.....+.+.+.++- ..+.+++++
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s 139 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS 139 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence 57999999986432221 1 12235556654444444443321 234555544
No 383
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.71 E-value=0.047 Score=46.65 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVN 56 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L-~D~~~ 56 (258)
.+++.|+||+|.+|..++..|...|. ++++ .+++.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~ 39 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSR 39 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence 35899999999999999999999886 6665 45544
No 384
>PRK12747 short chain dehydrogenase; Provisional
Probab=96.71 E-value=0.1 Score=44.81 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=28.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 54 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~ 54 (258)
+++.|+||+|.+|.+++..|+..|. +|++.+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~ 36 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGA--LVAIHYG 36 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 5799999999999999999999887 7888754
No 385
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.70 E-value=0.03 Score=47.58 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=31.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+++.|+||+|.+|.+++..|+..|. +|++.|+++.
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~ 37 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTHY 37 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCch
Confidence 4799999999999999999999887 8999998764
No 386
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.70 E-value=0.0077 Score=53.61 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=44.3
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 25 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 25 IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
|||. |.+|.+++..|...|+ +|.+||+++++.. ++.... .. .+.++.++++++|+||++.
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g----~~---~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDAVE--EAVAAG----AQ---AAASPAEAAEGADRVITML 60 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHHHH--HHHHcC----Ce---ecCCHHHHHhcCCEEEEeC
Confidence 5897 9999999999999887 8999999765322 222211 11 1245678899999999996
No 387
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.70 E-value=0.16 Score=43.87 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 54 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~ 54 (258)
+.+++.|+||++.+|.+++..|+..|. .|++.+.
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~ 40 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN 40 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence 345899999999999999999999887 7887754
No 388
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.69 E-value=0.022 Score=45.16 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=29.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
||.|+|+ |.+|+.++..|...|. +++.++|.+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 6899998 9999999999999986 6899999873
No 389
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=96.68 E-value=0.041 Score=46.73 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
+++.|+|++|.+|++++..|...|. .|++.|++.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence 4789999999999999999998886 899999875
No 390
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.68 E-value=0.0043 Score=56.67 Aligned_cols=72 Identities=25% Similarity=0.308 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
+.+||+|+||+|.+|..+...|..+. ...+|.++..+...|+.+.+... .+.... .+ +.++.++|+||++.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~--~~-~~~~~~~Dvvf~a~p 75 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD--AA-EFDWSQAQLAFFVAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe--Cc-hhhccCCCEEEECCC
Confidence 45799999999999999999998742 23488888665444444333221 222111 11 234589999999874
No 391
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.68 E-value=0.032 Score=47.23 Aligned_cols=68 Identities=24% Similarity=0.200 Sum_probs=45.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc----hHhhhCCCCEEEEc
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLVIIP 95 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d----~~~a~~~aDiVIi~ 95 (258)
+++.|+|++|.+|.+++..|++.|. +|++.|++.... .. ..+..+.. -.+ ..+.+...|++|.+
T Consensus 6 k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ 74 (235)
T PRK06550 6 KTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILCNT 74 (235)
T ss_pred CEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence 5799999999999999999999887 899999865311 00 01111111 011 12234578999999
Q ss_pred CCCC
Q 025075 96 AGVP 99 (258)
Q Consensus 96 ag~~ 99 (258)
+|..
T Consensus 75 ag~~ 78 (235)
T PRK06550 75 AGIL 78 (235)
T ss_pred CCCC
Confidence 9864
No 392
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.67 E-value=0.19 Score=43.37 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHHHHHhcCCCCCeEEEEe-CCCch---Hhh------
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQL---ENA------ 85 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~~dl~~~~~~~~v~~~~-~~~d~---~~a------ 85 (258)
+.+++.|+||+|.+|..++..|...|. .+++..++.. .....++.... ..+..+. .-+|. .+.
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999886 6777766432 11122232211 1111111 11122 112
Q ss_pred -hCCCCEEEEcCCCCCCC---CCchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 86 -LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 86 -~~~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
+...|++|..+|..... ..+.. ..+..|+. ..+.+.+.+.+....+.++++|.
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 23579999999864321 11122 23455543 34556666666555666766654
No 393
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.66 E-value=0.049 Score=46.72 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=31.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
++|.|+||+|.+|.+++..|...|. +|++.|++..
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~ 43 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLD 43 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 4799999999999999999999886 8999998754
No 394
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.65 E-value=0.012 Score=52.21 Aligned_cols=157 Identities=24% Similarity=0.281 Sum_probs=89.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC--CCEEEEcCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAGV 98 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aDiVIi~ag~ 98 (258)
|||.|+|++|++|+.+...|. .+. +++-.|... +|+.+.. .+.+.++. -|+||.+|..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence 579999999999999998887 333 777776543 4444322 23455554 5999999875
Q ss_pred CC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec-CCC--CCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHH
Q 025075 99 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV--NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA 173 (258)
Q Consensus 99 ~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NPv--d~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~ 173 (258)
.. +...++..-+.-|+.-...+++...+++- ++|-+| .-| ..- ..-++..---+|-.+.|-+.+-...+
T Consensus 61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga--~lVhiSTDyVFDG~~----~~~Y~E~D~~~P~nvYG~sKl~GE~~ 134 (281)
T COG1091 61 TAVDKAESEPELAFAVNATGAENLARAAAEVGA--RLVHISTDYVFDGEK----GGPYKETDTPNPLNVYGRSKLAGEEA 134 (281)
T ss_pred cccccccCCHHHHHHhHHHHHHHHHHHHHHhCC--eEEEeecceEecCCC----CCCCCCCCCCCChhhhhHHHHHHHHH
Confidence 32 22334566678899999999999988753 333333 222 000 00001111134455666654432221
Q ss_pred HHHHHHHhCCCCCce--e-EEEEecCCCCceeeccCCCC
Q 025075 174 NTFVAEVLGLDPRDV--D-VPVVGGHAGVTILPLLSQVK 209 (258)
Q Consensus 174 ~~~la~~l~v~~~~v--~-~~v~G~h~g~~~vp~~S~~~ 209 (258)
.+..+ |+.+ + .+|+|+++++-..+.|..+.
T Consensus 135 ----v~~~~--~~~~I~Rtswv~g~~g~nFv~tml~la~ 167 (281)
T COG1091 135 ----VRAAG--PRHLILRTSWVYGEYGNNFVKTMLRLAK 167 (281)
T ss_pred ----HHHhC--CCEEEEEeeeeecCCCCCHHHHHHHHhh
Confidence 22222 3333 4 68999986444445555444
No 395
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.65 E-value=0.01 Score=55.02 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..++|+|||. |.||+.++..|..-|. +|..||..... . .. ... ..++++.++.||+|++..
T Consensus 115 ~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~--~---~~-----~~~----~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 115 HDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD--R---GD-----EGD----FRSLDELVQEADILTFHT 175 (378)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc--c---cc-----ccc----cCCHHHHHhhCCEEEEeC
Confidence 4469999998 9999999999988887 99999963211 0 00 000 135788899999999875
No 396
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.65 E-value=0.025 Score=50.54 Aligned_cols=89 Identities=11% Similarity=0.237 Sum_probs=53.6
Q ss_pred HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---ChhH--HHHHhcCCCCCeEEE--EeCC
Q 025075 7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV--TADISHMDTGAVVRG--FLGQ 79 (258)
Q Consensus 7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~---~~g~--~~dl~~~~~~~~v~~--~~~~ 79 (258)
|.+..++.-...+.+++.|+|| |.+|.++++.|+..|. .+|.+++++. ++.+ +.++........+.. +...
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GA-GGagrAia~~La~~G~-~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~ 190 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGA-GGAATAIQVQCALDGA-KEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDT 190 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhh
Confidence 5666654332334458999998 9999999999998885 5799999986 2222 222322111111111 1111
Q ss_pred CchHhhhCCCCEEEEcCC
Q 025075 80 PQLENALTGMDLVIIPAG 97 (258)
Q Consensus 80 ~d~~~a~~~aDiVIi~ag 97 (258)
.++.+.++.+|+||.+-.
T Consensus 191 ~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 191 EKLKAEIASSDILVNATL 208 (289)
T ss_pred hHHHhhhccCCEEEEeCC
Confidence 234456778999999753
No 397
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.64 E-value=0.021 Score=51.64 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=45.5
Q ss_pred CeEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcCCCCCeEEEEe
Q 025075 21 FKVAILGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL 77 (258)
Q Consensus 21 ~KI~IIGa~G~--------------------VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~~~~~~v~~~~ 77 (258)
|||+|-|| |+ =|+++|..|...|+ +|.+||+++.. .....+.+... ..
T Consensus 1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~-- 71 (341)
T TIGR01724 1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV-- 71 (341)
T ss_pred CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee--
Confidence 57888887 74 37788888888888 99999987642 12223433221 11
Q ss_pred CCCchHhhhCCCCEEEEcC
Q 025075 78 GQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 78 ~~~d~~~a~~~aDiVIi~a 96 (258)
..+..++.+++|+||++.
T Consensus 72 -AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred -cCCHHHHHhCCCEEEEec
Confidence 235678999999999986
No 398
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.64 E-value=0.024 Score=43.59 Aligned_cols=73 Identities=26% Similarity=0.312 Sum_probs=40.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCe-EEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~-v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
||+|+|++|.+|..++..|...+.+.-..+++.+...+......+...... ...+. ..+++ ..++|+||++.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~ 74 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALP 74 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCC
Confidence 689999779999999888887543433334465543333222222211100 11111 12332 359999999863
No 399
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.64 E-value=0.19 Score=43.36 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=30.8
Q ss_pred CCeEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G-~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+| .+|..++..|+..|. +|++.|++..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~ 53 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHER 53 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence 45899999877 699999999999887 7999998764
No 400
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.64 E-value=0.0074 Score=54.55 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
...+++|||+ |..+...+..+.. .+ +.+|.+||++++ +..+.++.+ . ...+.. ..|.++++++||+|+.+
T Consensus 127 ~~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~---~~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 127 DARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVA---VDSAEEAVRGADIIVTA 199 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEE---ESSHHHHHTTSSEEEE-
T ss_pred CCceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-ccccee---ccchhhhcccCCEEEEc
Confidence 3458999997 9999888776654 55 789999999875 333445555 2 224432 25788999999998876
Q ss_pred C
Q 025075 96 A 96 (258)
Q Consensus 96 a 96 (258)
.
T Consensus 200 T 200 (313)
T PF02423_consen 200 T 200 (313)
T ss_dssp -
T ss_pred c
Confidence 4
No 401
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.64 E-value=0.027 Score=52.68 Aligned_cols=76 Identities=24% Similarity=0.165 Sum_probs=51.2
Q ss_pred HhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC
Q 025075 9 QAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT 87 (258)
Q Consensus 9 ~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~ 87 (258)
.++.|..+ .....+|+|+|. |.+|..++..+...|. +|+.+|+++.+.... ..+. + .+ .+++++++
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~G-~--~v------~~leeal~ 249 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMDG-F--RV------MTMEEAAK 249 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-HhcC-C--Ee------CCHHHHHh
Confidence 44555543 234459999998 9999999999988886 899999887532111 1111 1 11 13467899
Q ss_pred CCCEEEEcCC
Q 025075 88 GMDLVIIPAG 97 (258)
Q Consensus 88 ~aDiVIi~ag 97 (258)
++|+||.+.|
T Consensus 250 ~aDVVItaTG 259 (406)
T TIGR00936 250 IGDIFITATG 259 (406)
T ss_pred cCCEEEECCC
Confidence 9999988754
No 402
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.63 E-value=0.033 Score=48.26 Aligned_cols=115 Identities=22% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCchH---hh------hC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQLE---NA------LT 87 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d~~---~a------~~ 87 (258)
.++|.|+||+|.+|..++..|+.+|. +|++.+++..... ..++.+. ..+..+. .-.|.+ +. +.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPYP---GRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 35799999999999999999999987 8999998764211 1122111 1222111 111211 11 24
Q ss_pred CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCC
Q 025075 88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 139 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNP 139 (258)
..|++|.++|...... .+. .+.+..|+.-...+.+.+.++ .+.+.+++++..
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 140 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST 140 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 6799999998643211 111 234456655544444444332 233566666553
No 403
>PLN02494 adenosylhomocysteinase
Probab=96.61 E-value=0.028 Score=53.42 Aligned_cols=101 Identities=22% Similarity=0.191 Sum_probs=66.9
Q ss_pred HHhHHhhcCC-CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhh
Q 025075 8 RQAKCRAKGG-AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENA 85 (258)
Q Consensus 8 ~~~~~~~~~~-~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a 85 (258)
..++.|..+. ....+|+|+|. |.+|..++..+...|. +|+.+|+++.+ ..+. .+. + .+ .+++++
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~--~~G-~--~v------v~leEa 306 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQAL--MEG-Y--QV------LTLEDV 306 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHH--hcC-C--ee------ccHHHH
Confidence 5566676643 33468999998 9999999999988886 79999988743 2221 111 1 11 135678
Q ss_pred hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075 86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 86 ~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
++.+|+||.+.|.. .++ -.+.+....|++++++++-+
T Consensus 307 l~~ADVVI~tTGt~---------------~vI--~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 307 VSEADIFVTTTGNK---------------DII--MVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred HhhCCEEEECCCCc---------------cch--HHHHHhcCCCCCEEEEcCCC
Confidence 99999999876421 111 02334444588999999875
No 404
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.041 Score=49.96 Aligned_cols=116 Identities=17% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEE--EEeCCCchHhhh-------CC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVR--GFLGQPQLENAL-------TG 88 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~--~~~~~~d~~~a~-------~~ 88 (258)
.++|.|+||+|.+|..++..|+..|. +|++.+++++.. ...++.......... ++....++++.+ ..
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 35799999999999999999999987 899999876421 122232211111111 111111222222 46
Q ss_pred CCEEEEcCCCCCCCC--C-ch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 89 MDLVIIPAGVPRKPG--M-TR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 89 aDiVIi~ag~~~~~g--~-~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
.|++|.++|...... + +. .+.+..|+- ..+.+.+.+.+.. .+.+|+++.
T Consensus 85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS 143 (330)
T PRK06139 85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS 143 (330)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 899999998643211 1 11 123444443 3344445555433 456666653
No 405
>PRK07578 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.019 Score=47.63 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=57.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHh---hhCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLEN---ALTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~---a~~~aDiVIi~ag 97 (258)
|++.|+||+|.+|..++..|..+ . +|++.+++.. ....|+.+. .++++ .+...|++|.++|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~id~lv~~ag 64 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDP------------ASIRALFEKVGKVDAVVSAAG 64 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCCh------------HHHHHHHHhcCCCCEEEECCC
Confidence 48999999999999999999877 3 8899987642 011122221 11222 2347899999998
Q ss_pred CCCCC---CCchhh---HHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075 98 VPRKP---GMTRDD---LFNINAGIVRTLCEGIAKC-CPNATVNLISN 138 (258)
Q Consensus 98 ~~~~~---g~~r~d---~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 138 (258)
..... ..+..+ .+..|+.....+.+...++ .+.+.++++|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss 112 (199)
T PRK07578 65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSG 112 (199)
T ss_pred CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcc
Confidence 64311 122222 2344554333444433332 23455665553
No 406
>PRK09134 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.029 Score=48.44 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~ 55 (258)
.+++.|+||+|.+|.+++..|...|. ++++.+..
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~ 42 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNR 42 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 35799999999999999999998886 77777654
No 407
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.60 E-value=0.0093 Score=57.73 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
.++|+|||. |.+|+.++..|...|. +|..||+........++ .+.. ..++++.+++||+|+++....
T Consensus 138 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~l~lPlt 204 (525)
T TIGR01327 138 GKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL-------GVEL---VDDLDELLARADFITVHTPLT 204 (525)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---cCCHHHHHhhCCEEEEccCCC
Confidence 358999998 9999999999987777 89999975322222111 1111 135788999999999986321
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN 141 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd 141 (258)
+ +++. ++ | . +.+....|.+++|+++ .-+|
T Consensus 205 --~-~T~~-li--~----~---~~l~~mk~ga~lIN~aRG~~vd 235 (525)
T TIGR01327 205 --P-ETRG-LI--G----A---EELAKMKKGVIIVNCARGGIID 235 (525)
T ss_pred --h-hhcc-Cc--C----H---HHHhcCCCCeEEEEcCCCceeC
Confidence 1 1111 11 1 1 3344445788888886 3455
No 408
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.60 E-value=0.0096 Score=55.29 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
..++|+|||. |.||+.++..|...|. +|..||...... .. ... ..++++.++.||+|++...
T Consensus 115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~~-----~~-----~~~----~~~l~ell~~aDiV~lh~P 176 (381)
T PRK00257 115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQEA-----EG-----DGD----FVSLERILEECDVISLHTP 176 (381)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-----Ccc----ccCHHHHHhhCCEEEEeCc
Confidence 4468999998 9999999999988887 999999743210 00 011 1257788999999999753
No 409
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.60 E-value=0.08 Score=45.19 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 54 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~ 54 (258)
..+|.|+||+|++|++++..|+.+|. ++++...
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~ 38 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK 38 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 35899999999999999999998887 6666543
No 410
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.58 E-value=0.025 Score=53.20 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..+..+|+|+|+ |.+|..++..|...|. .+|.++|++..+... +.... ... .+. ..++.+++.++|+||.+.
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~--la~~~-g~~--~i~-~~~l~~~l~~aDvVi~aT 248 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAED--LAKEL-GGE--AVK-FEDLEEYLAEADIVISST 248 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHH--HHHHc-CCe--Eee-HHHHHHHHhhCCEEEECC
Confidence 344469999998 9999999999988774 489999987653321 22111 111 111 135678899999999987
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN 141 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd 141 (258)
+.+..- .+ .+..+...... ...+++-+++|-|
T Consensus 249 ~s~~~i-i~------------~e~l~~~~~~~~~~~~viDla~Prd 281 (417)
T TIGR01035 249 GAPHPI-VS------------KEDVERALRERTRPLFIIDIAVPRD 281 (417)
T ss_pred CCCCce-Ec------------HHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 654211 11 11222222111 2457888999987
No 411
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.0081 Score=53.89 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
..++|+|||.+|.||..++..|...|. +|.+++... .++.+.++.||+||.+.|.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR 212 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence 345899999866999999999998887 888886532 2456889999999999875
Q ss_pred C
Q 025075 99 P 99 (258)
Q Consensus 99 ~ 99 (258)
+
T Consensus 213 ~ 213 (301)
T PRK14194 213 P 213 (301)
T ss_pred h
Confidence 5
No 412
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.57 E-value=0.087 Score=44.97 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 54 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~ 54 (258)
+++|.|+||+|.+|+.++..|+..|. ++++.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~ 34 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA 34 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence 45899999999999999999998886 6776543
No 413
>PRK05599 hypothetical protein; Provisional
Probab=96.55 E-value=0.18 Score=43.29 Aligned_cols=153 Identities=12% Similarity=0.138 Sum_probs=79.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCch-------HhhhC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQL-------ENALT 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~-------~~a~~ 87 (258)
|.+.|+||++.+|..++..|. +|. .|++.++++++. ...++...... .+..+. ...+. .+.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 358899999999999999988 464 899999876422 22233322110 111111 01111 12234
Q ss_pred CCCEEEEcCCCCCCCC---Cch---hhHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075 88 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 157 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~ 157 (258)
..|++|+.+|...... .+. .+....| +.+.+.+.+.+.+...++.|+++|.-... .+ .
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-----------~~-~ 144 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGW-----------RA-R 144 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccc-----------cC-C
Confidence 6899999998743211 111 1222223 23344555666554445777777764431 11 2
Q ss_pred CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEE
Q 025075 158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP 191 (258)
Q Consensus 158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~ 191 (258)
|..-.++.+.-....+-+.++++++ +..|++.
T Consensus 145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~ 176 (246)
T PRK05599 145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLI 176 (246)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEE
Confidence 2222344433233355667777764 3455543
No 414
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.55 E-value=0.013 Score=53.31 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.++|+|||+ |..|...+..+....-+.+|.+|+++.++.+. .++.+. ....+.. ..|+++++++||+||.+..
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~-~g~~v~~---~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAE-LGIPVTV---ARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhc-cCceEEE---eCCHHHHHccCCEEEEeeC
Confidence 358999998 99999887777643335799999998763332 223221 1112222 3577889999999988753
No 415
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.54 E-value=0.0068 Score=53.03 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCCC----hhH----HHHHhcCCCCCeEEEEeCC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVNT----PGV----TADISHMDTGAVVRGFLGQ 79 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~----~~~-----~ei~L~D~~~~----~g~----~~dl~~~~~~~~v~~~~~~ 79 (258)
+-+..||.|.|| |..|..++.+|... |+- ++++++|.+-- +.. ...+.+ +...- ...
T Consensus 22 ~l~d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~--~~~~~---~~~ 95 (254)
T cd00762 22 KISEHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLAR--FANPE---RES 95 (254)
T ss_pred ChhhcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHH--HcCcc---ccc
Confidence 344469999998 99999999877653 331 38999998641 111 011110 10011 112
Q ss_pred CchHhhhC--CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC--CcHHHHHHHHHHhC
Q 025075 80 PQLENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAG 155 (258)
Q Consensus 80 ~d~~~a~~--~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd--~~~~i~t~~~~~~~ 155 (258)
.++.++++ +.|++|=+.+.+ |- +.+++.+.|.+++++.+|+-.|||.. -.++ +-+.+.+
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t 158 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT 158 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc
Confidence 57899999 999987765433 31 13678899999999999999999986 3332 3343332
Q ss_pred CCCCCcEEEEe
Q 025075 156 TYDPKKLLGVT 166 (258)
Q Consensus 156 ~~~~~kviG~t 166 (258)
+.+.++++.
T Consensus 159 --~G~ai~AtG 167 (254)
T cd00762 159 --EGRAIFASG 167 (254)
T ss_pred --CCCEEEEEC
Confidence 234677874
No 416
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.54 E-value=0.016 Score=52.95 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
..||.|||+ |.+|+.++..|+..|+ ++|.++|.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 358999998 9999999999999986 6999999874
No 417
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.54 E-value=0.015 Score=47.93 Aligned_cols=57 Identities=28% Similarity=0.480 Sum_probs=44.4
Q ss_pred CCCCCeEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075 17 GAAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~-VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
.-...||.|||+ |. +|..++..|...|. +|.+.+++. .++.+.+++||+||.+
T Consensus 41 ~l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsa 94 (168)
T cd01080 41 DLAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVA 94 (168)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEc
Confidence 345569999998 87 58889999988876 688887531 2456789999999999
Q ss_pred CCCC
Q 025075 96 AGVP 99 (258)
Q Consensus 96 ag~~ 99 (258)
.+.|
T Consensus 95 t~~~ 98 (168)
T cd01080 95 VGKP 98 (168)
T ss_pred CCCC
Confidence 8765
No 418
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.54 E-value=0.1 Score=44.44 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+.++|.|+|++|.+|.+++..|+.+|. +|+++++++.
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~ 41 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQK 41 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChH
Confidence 345899999999999999999999887 8999998774
No 419
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.54 E-value=0.044 Score=47.43 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+|.+|.+++..|+..|. +|++.|++++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~ 41 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSAE 41 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35899999999999999999999887 8999998764
No 420
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.54 E-value=0.022 Score=53.66 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=63.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.+..+|+|+|+ |.+|..++..|...|. .+|.++|++..+... +.... ..... . ..++.+.+.++|+||.+.|
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~--la~~~-g~~~~--~-~~~~~~~l~~aDvVI~aT~ 251 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERAEE--LAEEF-GGEAI--P-LDELPEALAEADIVISSTG 251 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHH--HHHHc-CCcEe--e-HHHHHHHhccCCEEEECCC
Confidence 44569999998 9999999998887774 589999987643321 22111 11111 1 1355678899999999876
Q ss_pred CCCCCCCchhhHHHHhHHHHHHHHHHh-hhh-CCCcEEEEecCCCC
Q 025075 98 VPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVN 141 (258)
Q Consensus 98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i-~~~-~p~a~viv~tNPvd 141 (258)
.+..- .+ .+.++.. ... ..+.+++=+++|-|
T Consensus 252 s~~~~-i~------------~~~l~~~~~~~~~~~~vviDla~Prd 284 (423)
T PRK00045 252 APHPI-IG------------KGMVERALKARRHRPLLLVDLAVPRD 284 (423)
T ss_pred CCCcE-Ec------------HHHHHHHHhhccCCCeEEEEeCCCCC
Confidence 54211 11 1112222 111 24567888999988
No 421
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.53 E-value=0.06 Score=47.94 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=76.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHH-HHHhcCCCCCeEEEE----eCCCchH-------hhhC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT-ADISHMDTGAVVRGF----LGQPQLE-------NALT 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~-~dl~~~~~~~~v~~~----~~~~d~~-------~a~~ 87 (258)
+.|.|+|||..+|.++|+.|+..|. .+++..+... ...+ .++.......++..+ ....+.+ ..+.
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 4688999999999999999999997 7788876553 1122 333333221112111 1112222 2356
Q ss_pred CCCEEEEcCCCCCCCCC-c------hhhHHHH----hHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 88 GMDLVIIPAGVPRKPGM-T------RDDLFNI----NAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 88 ~aDiVIi~ag~~~~~g~-~------r~d~~~~----n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
+.|+.|..||..+ .+. + ....++. .+-..+...+.+++.+ ++.|++++....
T Consensus 91 ~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG 153 (282)
T KOG1205|consen 91 RVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG 153 (282)
T ss_pred CCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence 9999999999877 332 1 1123333 4678899999999888 899988887666
No 422
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.53 E-value=0.01 Score=57.52 Aligned_cols=95 Identities=25% Similarity=0.352 Sum_probs=61.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
.++|+|||. |.+|+.++..|...|. +|..||+........++ .+.. .++++.++.||+|+++....
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~ell~~aDiV~l~lP~t 205 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVEL----VSLDELLARADFITLHTPLT 205 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE----EcHHHHHhhCCEEEEccCCC
Confidence 468999998 9999999999988887 99999985432222111 1111 15678999999999986321
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN 141 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd 141 (258)
+ +++ .++ | . +.+....|++++|+++ ..+|
T Consensus 206 --~-~t~-~li--~----~---~~l~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 206 --P-ETR-GLI--G----A---EELAKMKPGVRIINCARGGIID 236 (526)
T ss_pred --h-Hhh-cCc--C----H---HHHhcCCCCeEEEECCCCceeC
Confidence 1 111 111 1 2 2333445788999886 3455
No 423
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.53 E-value=0.0096 Score=54.45 Aligned_cols=69 Identities=22% Similarity=0.412 Sum_probs=44.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
||+|+||+|.+|..++..|...++ ..+++++......+..+.+.. ..+... ..+ .++++++|+||++.|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~--~~~-~~~~~~~D~v~~a~g 70 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVN--EAK-IESFEGIDIALFSAG 70 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEE--eCC-hHHhcCCCEEEECCC
Confidence 699999999999999998887543 236677655544444333221 122211 112 246799999999976
No 424
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.53 E-value=0.013 Score=53.36 Aligned_cols=64 Identities=25% Similarity=0.306 Sum_probs=46.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.++|+|||. |.+|+.++..+..-|. +|..||+...+... ..+. .. ...++++.++.||+|++..
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~--~~~~-----~~---~~~~Ld~lL~~sDiv~lh~ 205 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERA--GVDG-----VV---GVDSLDELLAEADILTLHL 205 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhh--cccc-----ce---ecccHHHHHhhCCEEEEcC
Confidence 358999998 9999999999998888 99999984321111 0111 11 1246789999999999975
No 425
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.53 E-value=0.021 Score=53.86 Aligned_cols=125 Identities=26% Similarity=0.334 Sum_probs=72.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH---HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.++|.|+|+ |.+|..++..|+..|. +|+++|.+..... ..++... .+..+.... ..+...++|+||.++
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~-~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGEY-PEEFLEGVDLVVVSP 76 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCc-chhHhhcCCEEEECC
Confidence 358999998 8899999999999997 8999999753211 1222211 122222111 124567899999998
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCCCcHHHHHHHHHHhC
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKAG 155 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd~~~~i~t~~~~~~~ 155 (258)
|.+... ......-+.+++++.......... + ..+|-+| |==.+.+.+++++++..+
T Consensus 77 g~~~~~-~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 77 GVPLDS-PPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred CCCCCC-HHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 864221 111111234566655544433322 2 3344454 444455667777776543
No 426
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.52 E-value=0.055 Score=46.62 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=31.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
+++.|+|++|.+|.+++..|+..|. +|++.|++..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~ 43 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTD 43 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence 4789999999999999999999987 8999998653
No 427
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.52 E-value=0.11 Score=46.22 Aligned_cols=36 Identities=36% Similarity=0.435 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+++.|+||+|.+|..++..|...|. +|++.+++.+
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~ 44 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEA 44 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 35799999999999999999999987 8999998764
No 428
>PRK08223 hypothetical protein; Validated
Probab=96.51 E-value=0.023 Score=50.73 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=31.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.||.|||+ |.+|+.++..|+..|+ ++|.|+|-|.
T Consensus 28 s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV 61 (287)
T ss_pred CCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 48999998 9999999999999996 6999999874
No 429
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.50 E-value=0.015 Score=52.89 Aligned_cols=73 Identities=10% Similarity=0.156 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
..+++|||+ |..|...+..+....-+++|.++|+++++.. ..++.+. +...+.. ..|++++++++|+||.+..
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~---~~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYV---VNSADEAIEEADIIVTVTN 201 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEE---eCCHHHHHhcCCEEEEccC
Confidence 458999997 9999887766554333579999999876432 2223221 1222222 2467889999999998753
No 430
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.48 E-value=0.023 Score=50.06 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=53.0
Q ss_pred HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHh
Q 025075 7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLEN 84 (258)
Q Consensus 7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~ 84 (258)
|.+...+.....+.+++.|+|+ |.+|.+++..|...|. +|.++|++.++.+. .++... . ..... +.+ +.
T Consensus 104 ~~~~l~~~~~~~~~k~vliiGa-Gg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~--~-~~~~~--~~~-~~ 174 (270)
T TIGR00507 104 LVSDLERLIPLRPNQRVLIIGA-GGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRY--G-EIQAF--SMD-EL 174 (270)
T ss_pred HHHHHHhcCCCccCCEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhc--C-ceEEe--chh-hh
Confidence 6666655333334568999998 9999999999998875 89999987653322 122211 1 12211 111 23
Q ss_pred hhCCCCEEEEcCCCC
Q 025075 85 ALTGMDLVIIPAGVP 99 (258)
Q Consensus 85 a~~~aDiVIi~ag~~ 99 (258)
.+.++|+||.+.+..
T Consensus 175 ~~~~~DivInatp~g 189 (270)
T TIGR00507 175 PLHRVDLIINATSAG 189 (270)
T ss_pred cccCccEEEECCCCC
Confidence 456899999997653
No 431
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.48 E-value=0.017 Score=51.88 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..+++|||+ |..+...+..+..-..+++|.+||++.++. .+.++.+. ....+.. ..+.++++++||+|+.+-
T Consensus 117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-~~~~v~~---~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-FGVDIRP---VDNAEAALRDADTITSIT 190 (301)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHh-cCCcEEE---eCCHHHHHhcCCEEEEec
Confidence 468999997 999988877666544568999999987632 23334432 1223332 246789999999998764
No 432
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.47 E-value=0.029 Score=53.25 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 20 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~-~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
.+||.|+|. |..|.+ ++..|...|. +|...|.+... ...+|... .+....+ .+ .+.++++|+||.+.|+
T Consensus 7 ~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~-~~-~~~~~~~d~vv~spgi 76 (461)
T PRK00421 7 IKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIG-HD-AENIKDADVVVYSSAI 76 (461)
T ss_pred CCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCC-CC-HHHCCCCCEEEECCCC
Confidence 358999998 999999 7989999998 89999987642 12234332 1222222 23 3567899999999988
Q ss_pred CCCCCCchhhHHHHhHHHHHH--HHHHhhhhCCCcEEEEe--cCCCCCcHHHHHHHHHHhC
Q 025075 99 PRKPGMTRDDLFNINAGIVRT--LCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAG 155 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~--i~~~i~~~~p~a~viv~--tNPvd~~~~i~t~~~~~~~ 155 (258)
|...- ........+++++.+ ++..+. ++..+|-+ ||==.+.+.+++++++..+
T Consensus 77 ~~~~~-~~~~a~~~~i~i~~~~e~~~~~~---~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 77 PDDNP-ELVAARELGIPVVRRAEMLAELM---RFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred CCCCH-HHHHHHHCCCcEEeHHHHHHHHH---ccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 75321 112222345555432 322222 12123334 5655566678888877654
No 433
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.018 Score=49.73 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=50.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
|+|.|+||+|++|+++...|...+. +|+..-++.+....+. .........+.....+..+++|.|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 5899999999999999999998876 8888877665333332 11111222222334567888999999998754
No 434
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.46 E-value=0.02 Score=51.98 Aligned_cols=95 Identities=25% Similarity=0.355 Sum_probs=60.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
.++++|||. |.+|+.++..+..-|. +|..||+.+. .+..+... .. + .++++.++.||+|++.+..
T Consensus 146 gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~------~~-y---~~l~ell~~sDii~l~~Pl- 210 (324)
T COG1052 146 GKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELG------AR-Y---VDLDELLAESDIISLHCPL- 210 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcC------ce-e---ccHHHHHHhCCEEEEeCCC-
Confidence 468999997 9999999999885454 9999998764 11111111 11 1 1367899999999998631
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN 141 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd 141 (258)
.+ ++| .++. .+.+.+..|.+++||++= =+|
T Consensus 211 -t~-~T~--------hLin--~~~l~~mk~ga~lVNtaRG~~VD 242 (324)
T COG1052 211 -TP-ETR--------HLIN--AEELAKMKPGAILVNTARGGLVD 242 (324)
T ss_pred -Ch-HHh--------hhcC--HHHHHhCCCCeEEEECCCccccC
Confidence 11 111 1111 123445568899999863 355
No 435
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=96.45 E-value=0.0099 Score=52.97 Aligned_cols=97 Identities=15% Similarity=0.285 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
...+|+.||- |.+|++++..|...|+ .|+.||++..+ ..++.+... .+. ..+.|..++||+||...+.
T Consensus 34 s~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~~k--~~~f~~~Ga--~v~-----~sPaeVae~sDvvitmv~~ 101 (327)
T KOG0409|consen 34 SKTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTKDK--CKEFQEAGA--RVA-----NSPAEVAEDSDVVITMVPN 101 (327)
T ss_pred ccceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcHHH--HHHHHHhch--hhh-----CCHHHHHhhcCEEEEEcCC
Confidence 3569999997 9999999999999998 99999987542 334444432 221 2356889999999998764
Q ss_pred CC----------------CCCCch-hhHHHHhHHHHHHHHHHhhhh
Q 025075 99 PR----------------KPGMTR-DDLFNINAGIVRTLCEGIAKC 127 (258)
Q Consensus 99 ~~----------------~~g~~r-~d~~~~n~~i~~~i~~~i~~~ 127 (258)
|. ++|..- .|.-.-.-...++|.+.+...
T Consensus 102 ~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~ 147 (327)
T KOG0409|consen 102 PKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK 147 (327)
T ss_pred hHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC
Confidence 32 122211 233233455677888877743
No 436
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.43 E-value=0.025 Score=50.18 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=55.1
Q ss_pred HHHhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCCeEEEEeCCCchH
Q 025075 7 LRQAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFLGQPQLE 83 (258)
Q Consensus 7 ~~~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~~v~~~~~~~d~~ 83 (258)
|.+..++..+ +.+..++.|+|+ |.+|.+++..|...|. .+|.+++++.++.+.+ ++... . .+.. ..+..
T Consensus 109 ~~~~l~~~~~~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~--~-~~~~---~~~~~ 180 (278)
T PRK00258 109 FVRALEERLGVDLKGKRILILGA-GGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGAL--G-KAEL---DLELQ 180 (278)
T ss_pred HHHHHHhccCCCCCCCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhc--c-ceee---cccch
Confidence 5566654222 344468999998 9999999999998884 4899999986533222 22211 1 1111 11334
Q ss_pred hhhCCCCEEEEcCCCCC
Q 025075 84 NALTGMDLVIIPAGVPR 100 (258)
Q Consensus 84 ~a~~~aDiVIi~ag~~~ 100 (258)
+.+.++|+||.+...+.
T Consensus 181 ~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 181 EELADFDLIINATSAGM 197 (278)
T ss_pred hccccCCEEEECCcCCC
Confidence 67889999999865443
No 437
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.43 E-value=0.018 Score=51.42 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+-+..+|+|+|++|.+|.++++.|...+. +|.+++.. +.++.+.+++||+||.+.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~At 210 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAV 210 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEcc
Confidence 33446999999844599999999988875 78888641 124556789999999998
Q ss_pred CCC
Q 025075 97 GVP 99 (258)
Q Consensus 97 g~~ 99 (258)
|.|
T Consensus 211 G~~ 213 (283)
T PRK14192 211 GKP 213 (283)
T ss_pred CCC
Confidence 743
No 438
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.42 E-value=0.077 Score=45.02 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=47.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.||.|||+ |.+|..-+..|...|. +|.+++.+... ...++.... .+......++ .+.++++|+||.+.+
T Consensus 10 k~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~ 78 (205)
T TIGR01470 10 RAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATD 78 (205)
T ss_pred CeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCC
Confidence 48999998 9999999999988886 89999876542 222333221 3333333333 357899999998754
No 439
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.42 E-value=0.0097 Score=53.75 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCC-CChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVV-NTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~-~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.++|+| ||+|.||..+...|.++++ +++|.|++.. ...|+.+.+.. ..+.....+ ++++++.|++++ +|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~l~---~~~f~~vDia~f-ag 73 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIAPE---EVEWADFNYVFF-AG 73 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEECC---ccCcccCCEEEE-cC
Confidence 468999 9999999999999988875 5789999876 33343322222 122222222 256899999999 65
No 440
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.41 E-value=0.018 Score=52.06 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=46.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..+|+|||+ |.+|...+..+.. .+ +.+|.+|++++++.+ +.++.+. ...+.. ..++++++++||+|+.+.
T Consensus 125 ~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~---~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 125 ASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAEV---VTDLEAAVRQADIISCAT 197 (314)
T ss_pred CceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceEE---eCCHHHHHhcCCEEEEee
Confidence 458999997 9999999875554 44 469999999875332 2233221 112322 246678899999986654
No 441
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.41 E-value=0.049 Score=46.43 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.++.|+|++|.+|..++..|...|. .|+++|+++.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~~ 40 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQE 40 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 4799999999999999999998886 7999998764
No 442
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.41 E-value=0.014 Score=54.91 Aligned_cols=68 Identities=25% Similarity=0.263 Sum_probs=45.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhh-hCCCCEEEEc
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENA-LTGMDLVIIP 95 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a-~~~aDiVIi~ 95 (258)
|||.|+|+ |.+|..++..|...|. +++++|.+++.... +.... .+..+.+ ...++++ ++++|.||++
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~~~--~~~~~---~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERLRR--LQDRL---DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHHHH--HHhhc---CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 58999998 9999999999998887 89999987653222 22100 1111111 1123444 7899999998
Q ss_pred C
Q 025075 96 A 96 (258)
Q Consensus 96 a 96 (258)
.
T Consensus 73 ~ 73 (453)
T PRK09496 73 T 73 (453)
T ss_pred c
Confidence 5
No 443
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.06 Score=47.25 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=58.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEE----EeCCCchHhhh------CCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRG----FLGQPQLENAL------TGM 89 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~----~~~~~d~~~a~------~~a 89 (258)
.+.|+|| |.+|.+++..|. .|. +|++.|++..... ..++.... ..+.. +....++++.+ ...
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4556676 899999999886 665 8999998764221 12232211 11111 11111122222 358
Q ss_pred CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075 90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 138 (258)
Q Consensus 90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 138 (258)
|++|.+||.... ..+-.+.+..|+.-...+++.+.++ .+++.+++++.
T Consensus 78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS 126 (275)
T PRK06940 78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS 126 (275)
T ss_pred CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 999999997532 2223445666765554444444433 22344455544
No 444
>PRK07775 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.076 Score=46.44 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
++.+.|+||+|.+|.+++..|+.+|. +|++.+++..
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~~ 45 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF--PVALGARRVE 45 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 34799999999999999999999887 8888887653
No 445
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.39 E-value=0.024 Score=55.98 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCch---H-hhhCCCCEEEEc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---E-NALTGMDLVIIP 95 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~---~-~a~~~aDiVIi~ 95 (258)
..+|.|+|. |.+|+.++..|...+. +++++|.|+++-+. +.+... .+- +-..+|. + ..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~--~~~~g~--~v~-~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDHIET--LRKFGM--KVF-YGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHHHHH--HHhcCC--eEE-EEeCCCHHHHHhcCCCcCCEEEEE
Confidence 368999998 9999999999998887 89999998753222 222221 111 1112232 1 235689999998
Q ss_pred CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHH
Q 025075 96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 174 (258)
Q Consensus 96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~ 174 (258)
.+.+ +.|. .++..+++..|+..++. ..|+.+ .+.+++.+ -+.++--+...+.++-
T Consensus 472 ~~d~-----------~~n~----~i~~~ar~~~p~~~iiaRa~d~~~------~~~L~~~G---ad~v~~e~~e~sl~l~ 527 (621)
T PRK03562 472 IDDP-----------QTSL----QLVELVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKSG 527 (621)
T ss_pred eCCH-----------HHHH----HHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEehhhHhHHHHHH
Confidence 5311 2343 34555666678876655 444443 12334433 3445444555556666
Q ss_pred HHHHHHhCCCCCce
Q 025075 175 TFVAEVLGLDPRDV 188 (258)
Q Consensus 175 ~~la~~l~v~~~~v 188 (258)
+.+-+.+|++++++
T Consensus 528 ~~~L~~lg~~~~~~ 541 (621)
T PRK03562 528 RLVLESLGLGPYEA 541 (621)
T ss_pred HHHHHHcCCCHHHH
Confidence 77777888887665
No 446
>PLN00203 glutamyl-tRNA reductase
Probab=96.38 E-value=0.026 Score=54.54 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
...||+|||+ |.+|..++..|...|. .+|.+++++.++...+ ........+... ...++.+++.++|+||.+.+.
T Consensus 265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~~L--a~~~~g~~i~~~-~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 265 ASARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVAAL--REEFPDVEIIYK-PLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHH--HHHhCCCceEee-cHhhHHHHHhcCCEEEEccCC
Confidence 3569999998 9999999998888774 5899999886543322 211001112211 123566789999999987654
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhh----CCCcEEEEecCCCC
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVN 141 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~----~p~a~viv~tNPvd 141 (258)
+. |=. .++.++.+.+. ...-++|=++.|=|
T Consensus 340 ~~-pvI------------~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 340 ET-PLF------------LKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred CC-Cee------------CHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 32 211 13333333221 12236667899977
No 447
>PLN02858 fructose-bisphosphate aldolase
Probab=96.38 E-value=0.022 Score=60.97 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
++++||++||. |.+|..++..|...|+ +|..||+++.+.. ++..... .. ..++.+++++||+||++..
T Consensus 322 ~~~~~IGfIGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~Ga--~~-----~~s~~e~~~~aDvVi~~V~ 389 (1378)
T PLN02858 322 KPVKRIGFIGL-GAMGFGMASHLLKSNF--SVCGYDVYKPTLV--RFENAGG--LA-----GNSPAEVAKDVDVLVIMVA 389 (1378)
T ss_pred cCCCeEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHcCC--ee-----cCCHHHHHhcCCEEEEecC
Confidence 34579999997 9999999999999998 8999998764322 2322211 11 2356788999999999874
No 448
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.38 E-value=0.016 Score=52.15 Aligned_cols=93 Identities=20% Similarity=0.291 Sum_probs=60.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
.++|+|+|. |.+|+.++..|...|. +|..||+.... .. .... ..++++.++.||+|+++....
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~----~~~~--~~~l~ell~~aDiv~~~lp~t 184 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG----ISSI--YMEPEDIMKKSDFVLISLPLT 184 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC----cccc--cCCHHHHHhhCCEEEECCCCC
Confidence 468999997 9999999988877777 89999975321 00 0000 135788999999999986321
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS 142 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd~ 142 (258)
+ +++ .++ | .+.+....|++++|+++ .++|.
T Consensus 185 --~-~T~-~li--~-------~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 185 --D-ETR-GMI--N-------SKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred --c-hhh-cCc--C-------HHHHhcCCCCeEEEECCCccccCH
Confidence 1 111 111 1 22334445889999986 56773
No 449
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.38 E-value=0.021 Score=46.64 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=42.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
.++|+|||. |.-|.+.+.+|...|+ +|..-.+........-..+.. . ..+.+|+.+.||+|+++.
T Consensus 4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~Gf-----~----v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADGF-----E----VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT------E----CCEHHHHHHC-SEEEE-S
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCCC-----e----eccHHHHHhhCCEEEEeC
Confidence 358999998 9999999999999998 777776655422221122221 1 135679999999999985
No 450
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.37 E-value=0.025 Score=48.70 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=30.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.||+|+|+ |.+|+.++..|+..|. +++.++|.+.
T Consensus 22 ~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 48999998 9999999999999986 6999999764
No 451
>PRK08017 oxidoreductase; Provisional
Probab=96.36 E-value=0.049 Score=46.69 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=30.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
++|.|+||+|.+|.+++..|...|. +|++.+++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~~ 37 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKPD 37 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 3799999999999999999998887 8899988754
No 452
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.35 E-value=0.024 Score=50.52 Aligned_cols=114 Identities=16% Similarity=0.250 Sum_probs=70.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCC----CCCeEEEE----eCCCchHhhhCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD----TGAVVRGF----LGQPQLENALTGMD 90 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~----~~~~v~~~----~~~~d~~~a~~~aD 90 (258)
..|.|+||.+.+|..+++.++++|- .+++||++.. ...+..+.+.. +.+++... ..-...++...+.|
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~ 116 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVD 116 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCce
Confidence 3688999978999999999999986 8999999985 22233333211 11111100 00012345567999
Q ss_pred EEEEcCCCC-CCCC--CchhhH---HHHh----HHHHHHHHHHhhhhCCCcEEEEec
Q 025075 91 LVIIPAGVP-RKPG--MTRDDL---FNIN----AGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 91 iVIi~ag~~-~~~g--~~r~d~---~~~n----~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
++|.-||+. .++. .++.++ ++-| ..+++.+.+.+.+.+ ++.++.++
T Consensus 117 ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~Ia 172 (300)
T KOG1201|consen 117 ILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIA 172 (300)
T ss_pred EEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEeh
Confidence 999999963 3333 233221 2223 457789999998764 66666554
No 453
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.35 E-value=0.025 Score=49.26 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.||+|+|+ |.+|+.++..|+..|. ++|.++|.|.
T Consensus 25 ~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 25 SRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 48999998 9999999999999885 6999999875
No 454
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.34 E-value=0.024 Score=51.34 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
...+++|||+ |..+...+..+..-..+++|.+||+++++.+. ..+.+. ...+.. ..+.++++++||+|+.+.
T Consensus 127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 127 HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNT---TLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEE---ECCHHHHhcCCCEEEEec
Confidence 3458999997 99998888766654446899999998764332 223221 123332 246789999999998764
No 455
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.34 E-value=0.26 Score=42.06 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=64.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHh-------hhC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLEN-------ALT 87 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~-------a~~ 87 (258)
+.+.|+||++.+|..++..|++.|. +|++.++++... ...++..... .+..+. ...++++ .+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999997 899999876421 1122221111 111111 1112221 123
Q ss_pred -CCCEEEEcCCCCCCCC----Cchhh---HHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075 88 -GMDLVIIPAGVPRKPG----MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 88 -~aDiVIi~ag~~~~~g----~~r~d---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
..|++|..+|....++ .+..+ .+..|. .+.+.+.+.+.+....+.|+++|.
T Consensus 82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 6899999997432221 12212 222232 344555666665544567777764
No 456
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=96.32 E-value=0.098 Score=44.57 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD 53 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D 53 (258)
+.+.|+|++|.+|..++..|+..|. ++++..
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~ 34 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC 34 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence 4689999999999999999999886 677754
No 457
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.30 E-value=0.034 Score=49.01 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhh-hCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA-LTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a-~~~aDiVIi~a 96 (258)
.+||+|||. |.+|+.++..|...+. +.-+.++|++.++. ..+... ... .+|+++. ....|+||-+|
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~--~~~~~~-----~~~---~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLP--PALAGR-----VAL---LDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHH--HHhhcc-----Ccc---cCCHHHHhhcCCCEEEECC
Confidence 469999998 9999999988866432 22344566654322 222221 111 2356553 47899999998
Q ss_pred CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEE
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~vi 134 (258)
+ ...++++++.+-+.+.|-+++
T Consensus 71 ~----------------~~av~e~~~~iL~~g~dlvv~ 92 (267)
T PRK13301 71 G----------------QQAIAEHAEGCLTAGLDMIIC 92 (267)
T ss_pred C----------------HHHHHHHHHHHHhcCCCEEEE
Confidence 6 334566666666555554443
No 458
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.30 E-value=0.032 Score=47.01 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=30.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.||+|+|+ |.+|+.++..|+..|. ++|.++|.+.
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 38999998 9999999999999986 6899999773
No 459
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.30 E-value=0.026 Score=53.34 Aligned_cols=129 Identities=21% Similarity=0.166 Sum_probs=78.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
.+||+|+|. |.-|.+++..|...|. ++..+|.++......+. ......+....+..+. +...++|+||.+-|+|
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~--~~~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQ--PLLLEGIEVELGSHDD-EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhh--hhhccCceeecCccch-hccccCCEEEECCCCC
Confidence 569999998 9999999999999996 99999987642111111 0011123323333443 6789999999998876
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCcHHHHHHHHHHhC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIAAEVFKKAG 155 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~~~i~t~~~~~~~ 155 (258)
...-. -.......+++.-++--..+...+.-+|-| =||-=.+.|.+++++++..+
T Consensus 81 ~~~p~-v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 81 PTHPL-VEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCCHH-HHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 53321 111224455555555444443311113333 26766667778888877654
No 460
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.28 E-value=0.025 Score=51.39 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=57.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 98 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~ 98 (258)
.++|+|||. |.+|..++..+. .-|. +|..+|.........++ ... + .++++.++.||+|++....
T Consensus 145 gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~-~---~~l~ell~~sDvv~lh~pl 210 (323)
T PRK15409 145 HKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NAR-Y---CDLDTLLQESDFVCIILPL 210 (323)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcE-e---cCHHHHHHhCCEEEEeCCC
Confidence 368999998 999999998886 5565 88888875321111111 111 1 2578899999999998632
Q ss_pred CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075 99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
.+ +++. ++ | ++. +.+..|++++||++-
T Consensus 211 --t~-~T~~-li--~----~~~---l~~mk~ga~lIN~aR 237 (323)
T PRK15409 211 --TD-ETHH-LF--G----AEQ---FAKMKSSAIFINAGR 237 (323)
T ss_pred --Ch-HHhh-cc--C----HHH---HhcCCCCeEEEECCC
Confidence 11 1111 11 1 222 334458999999873
No 461
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.27 E-value=0.083 Score=44.69 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=45.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
.+||.|||+ |.+|...+..|...|. +|.+++.+... ...++.+.. .+.......+ ++.+.++|+||.+.+
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~ 79 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN 79 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence 358999998 9999999998888885 89999864322 222333321 1221111122 356899999888753
No 462
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.27 E-value=0.023 Score=51.66 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..+++|||+ |..+...+..|.. .+ +++|.+|+++.++++. .++.+. ....+.. ..++++++++||+|+.+.
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~~~-i~~v~V~~R~~~~a~~~a~~~~~~-~g~~v~~---~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLVRD-IRSARIWARDSAKAEALALQLSSL-LGIDVTA---ATDPRAAMSGADIIVTTT 202 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCC-ccEEEEECCCHHHHHHHHHHHHhh-cCceEEE---eCCHHHHhccCCEEEEec
Confidence 358999997 9999998887764 44 5799999998764332 233221 1112221 356788999999999875
Q ss_pred C
Q 025075 97 G 97 (258)
Q Consensus 97 g 97 (258)
.
T Consensus 203 ~ 203 (326)
T TIGR02992 203 P 203 (326)
T ss_pred C
Confidence 3
No 463
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.26 E-value=0.082 Score=52.08 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHhhhC----
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENALT---- 87 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~a~~---- 87 (258)
.+.+++.|+||+|.+|.+++..|+..|. +|++++++++.. ...++..... .+..+. ...+++++++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKGG--TAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHH
Confidence 3346799999999999999999999887 899999876421 1122222111 121111 1112233333
Q ss_pred ---CCCEEEEcCCCCCCCC---C-----chhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075 88 ---GMDLVIIPAGVPRKPG---M-----TRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 88 ---~aDiVIi~ag~~~~~g---~-----~r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN 138 (258)
..|++|.++|...... . +-...+..|+.. ++.+.+.+.+. ..+.++++|.
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS 509 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS 509 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence 6899999998642211 0 112234555544 34444444443 3456666653
No 464
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.26 E-value=0.027 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLV 46 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~ 46 (258)
++||+|+||+|.+|..+..+|...+.+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~ 28 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDI 28 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCe
Confidence 579999999999999999999888743
No 465
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.26 E-value=0.062 Score=50.63 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhh-------hCCCCE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTGMDL 91 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aDi 91 (258)
.+++.|+|++|.+|..++..|...|. ++++.|+........++........+. ++....++++. ....|+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~ 287 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI 287 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence 35799999999999999999999887 899998854322222222111000111 11111111111 225899
Q ss_pred EEEcCCCCCCC---CCc---hhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075 92 VIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 138 (258)
Q Consensus 92 VIi~ag~~~~~---g~~---r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN 138 (258)
||.++|..... ..+ -...+..|+.-...+.+.+... .+.+.|+++|.
T Consensus 288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 99999865321 111 1234556766666666666542 24567777664
No 466
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.25 E-value=0.14 Score=43.26 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=31.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~ 57 (258)
.+|.|+||+|.+|+.++..|.+.|. +|++.+++++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~ 40 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNEN 40 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence 4899999999999999999999887 8999998764
No 467
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.25 E-value=0.024 Score=52.06 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=48.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..+++|||+ |..+...+..+..-.-+.+|.+||+++++. ...++.+. ...+.. ..+.++++++||+|+.+.
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence 458999997 999988776555433468999999987632 23344431 112332 246889999999999865
No 468
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=96.25 E-value=0.2 Score=43.49 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=27.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~ 55 (258)
.+.|+||+|.+|.+++..|...|. +|++.+.+
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~ 34 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR 34 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence 689999999999999999999887 78886543
No 469
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.25 E-value=0.01 Score=54.40 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~ 55 (258)
+++||+|+||+|++|+.++..|...+.. +|+++...
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s 37 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWF-EVTALAAS 37 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcC
Confidence 4679999999999999999988876654 78888443
No 470
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=96.25 E-value=0.025 Score=50.93 Aligned_cols=104 Identities=18% Similarity=0.102 Sum_probs=65.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----hhHHHHHhcCCCCCeEEEEeC----CCchHhhh--CCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG----QPQLENAL--TGM 89 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~--~~a 89 (258)
++|.|+||+|++|++.+..|..+|. +++++|.-.. ...+..+.+. ...+....+ ...+++.+ ..-
T Consensus 3 ~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~f 78 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVKF 78 (343)
T ss_pred cEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcCC
Confidence 5899999999999999999999998 8999997432 1122223332 112322211 11222323 256
Q ss_pred CEEEEcCCCCCC-C-CCchhhHHHHhHHHHHHHHHHhhhhC
Q 025075 90 DLVIIPAGVPRK-P-GMTRDDLFNINAGIVRTLCEGIAKCC 128 (258)
Q Consensus 90 DiVIi~ag~~~~-~-g~~r~d~~~~n~~i~~~i~~~i~~~~ 128 (258)
|-|++.|+...- + -+....+...|+--...+.+.+++++
T Consensus 79 d~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~ 119 (343)
T KOG1371|consen 79 DAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN 119 (343)
T ss_pred ceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence 888887754221 1 12345667788888888999999887
No 471
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.23 E-value=0.028 Score=45.91 Aligned_cols=57 Identities=26% Similarity=0.445 Sum_probs=40.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
-+.++|+|||.+..||..++.+|..++- .+.+.+. .|.++++.++.||+||.++|
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~-----------------------~T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHS-----------------------KTKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-T-----------------------TSSSHHHHHTTSSEEEE-SS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccC-----------------------CCCcccceeeeccEEeeeec
Confidence 4446999999988999999999988764 4555432 13466788999999999998
Q ss_pred CC
Q 025075 98 VP 99 (258)
Q Consensus 98 ~~ 99 (258)
.|
T Consensus 89 ~~ 90 (160)
T PF02882_consen 89 KP 90 (160)
T ss_dssp ST
T ss_pred cc
Confidence 54
No 472
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.23 E-value=0.062 Score=40.74 Aligned_cols=67 Identities=25% Similarity=0.343 Sum_probs=44.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPA 96 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~a 96 (258)
+||+|||+ |.+|......+... +...-+.++|.++++.... ... + .+..+ +|+++.++ +.|+|+++.
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~--~~~-~--~~~~~---~~~~~ll~~~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF--AEK-Y--GIPVY---TDLEELLADEDVDAVIIAT 70 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH--HHH-T--TSEEE---SSHHHHHHHTTESEEEEES
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH--HHH-h--cccch---hHHHHHHHhhcCCEEEEec
Confidence 58999998 99999988777665 4443446899876533322 111 1 11122 46777776 899999985
No 473
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.22 E-value=0.067 Score=47.18 Aligned_cols=70 Identities=24% Similarity=0.250 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag 97 (258)
|+||+|||+ |.+|..++..+...+...=..+++.+.......+.... .... .+|+++.-.+.|+|+.+++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~----~~~~---~~d~~~l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE----AVRV---VSSVDALPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc----CCee---eCCHHHhccCCCEEEECCC
Confidence 579999998 99999999888765433222334443322111111110 1221 2455443356999999975
No 474
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.21 Score=43.04 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=63.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHh---hhCCCCE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LEN---ALTGMDL 91 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~---a~~~aDi 91 (258)
+++.|+|++|.+|..++..|+..|. +|++.+++.++.. ..++.... ...+..+. .-+| +.+ .+...|+
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 5899999999999999999999887 8999998764221 12232211 11111111 1112 111 2457999
Q ss_pred EEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 92 VIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 92 VIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
+|.++|...... .+. ...+..|+. +.+.+.+.+.+.. .+.++++|.
T Consensus 85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss 140 (259)
T PRK06125 85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG 140 (259)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence 999998643111 121 123444544 4455555555433 356665554
No 475
>PRK06123 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.15 Score=43.51 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=27.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
.+.|+|++|.+|++++..|...|. .+++.+.+.
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~ 36 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRN 36 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCC
Confidence 589999999999999999998886 677776543
No 476
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.21 E-value=0.049 Score=47.78 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEE
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 94 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi 94 (258)
+||||+|.||+|.+|+.+...+.+.+...=+..+|+......-.|..+......+.. ..+.|+.....++|++|=
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv-~v~~~~~~~~~~~DV~ID 75 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGV-PVTDDLLLVKADADVLID 75 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCc-eeecchhhcccCCCEEEE
Confidence 368999999999999999998887764444455666542111112221111001111 112345566788888775
No 477
>PLN02503 fatty acyl-CoA reductase 2
Probab=96.21 E-value=0.07 Score=52.53 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=65.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCC---hhHHH--HHhc-----------CC-----CCCeEEEEeC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTA--DISH-----------MD-----TGAVVRGFLG 78 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~---~g~~~--dl~~-----------~~-----~~~~v~~~~~ 78 (258)
++|.|+||+|++|..++..|+..+ -+.+|+++.+... ..+.+ ++.+ .. ...++..+.+
T Consensus 120 k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v~G 199 (605)
T PLN02503 120 KNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPVVG 199 (605)
T ss_pred CEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEEEe
Confidence 489999999999999998887643 3568888877542 11111 1111 00 0112332221
Q ss_pred --C--------CchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC
Q 025075 79 --Q--------PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 128 (258)
Q Consensus 79 --~--------~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~ 128 (258)
+ .+++...++.|+||.+|+... ...+..+....|+....++++.+.+..
T Consensus 200 Dl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~ 258 (605)
T PLN02503 200 NVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK 258 (605)
T ss_pred eCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 122333467999999987532 223345567789999999998887653
No 478
>PRK06484 short chain dehydrogenase; Validated
Probab=96.19 E-value=0.054 Score=51.88 Aligned_cols=153 Identities=17% Similarity=0.211 Sum_probs=81.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCCeEE-EEeCCCchHhhh-------CCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVR-GFLGQPQLENAL-------TGMD 90 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~~v~-~~~~~~d~~~a~-------~~aD 90 (258)
+++.|+||+|.+|.+++..|+..|. +|++.|+++.....+ ++.. ... .+. ++....++.+.+ ...|
T Consensus 270 k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~D~~~~~~~~~~~~~~~~~~g~id 345 (520)
T PRK06484 270 RVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGD-EHL-SVQADITDEAAVESAFAQIQARWGRLD 345 (520)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-cee-EEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5789999999999999999999987 899999876422111 1111 100 011 011111222222 3579
Q ss_pred EEEEcCCCCC--CC--CCch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075 91 LVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 162 (258)
Q Consensus 91 iVIi~ag~~~--~~--g~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv 162 (258)
++|.++|... .+ ..+. ...+..|+.-...+.+.+..+ ...+.|+++|..... . +.|..-.
T Consensus 346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-----------~-~~~~~~~ 413 (520)
T PRK06484 346 VLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL-----------L-ALPPRNA 413 (520)
T ss_pred EEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc-----------C-CCCCCch
Confidence 9999998742 11 1121 234555655544444444333 234677777754331 1 1333333
Q ss_pred EEEeeccHHHHHHHHHHHhCCCCCceeEE
Q 025075 163 LGVTMLDVVRANTFVAEVLGLDPRDVDVP 191 (258)
Q Consensus 163 iG~t~lds~R~~~~la~~l~v~~~~v~~~ 191 (258)
++.+..--..+-+.+++++. +..|++.
T Consensus 414 Y~asKaal~~l~~~la~e~~--~~gI~vn 440 (520)
T PRK06484 414 YCASKAAVTMLSRSLACEWA--PAGIRVN 440 (520)
T ss_pred hHHHHHHHHHHHHHHHHHhh--hhCeEEE
Confidence 44433223345566676663 3445543
No 479
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.15 E-value=0.048 Score=47.52 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 56 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~ 56 (258)
..||+|+|+ |.+|+.++..|+..|. +++.++|.+.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 359999998 9999999999999885 6999999874
No 480
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.14 E-value=0.023 Score=46.44 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=47.3
Q ss_pred HHhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075 8 RQAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL 86 (258)
Q Consensus 8 ~~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~ 86 (258)
..++.|... ...-+++.|+|- |.+|..+|..|...|. .|..+|+|+.+... -..+.. .+. .+++++
T Consensus 10 ~d~i~r~t~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga--~V~V~e~DPi~alq-A~~dGf---~v~------~~~~a~ 76 (162)
T PF00670_consen 10 VDGIMRATNLMLAGKRVVVIGY-GKVGKGIARALRGLGA--RVTVTEIDPIRALQ-AAMDGF---EVM------TLEEAL 76 (162)
T ss_dssp HHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT---EEEEE-SSHHHHHH-HHHTT----EEE-------HHHHT
T ss_pred HHHHHhcCceeeCCCEEEEeCC-CcccHHHHHHHhhCCC--EEEEEECChHHHHH-hhhcCc---Eec------CHHHHH
Confidence 355666654 222358999998 9999999999999886 89999998743221 122321 221 357899
Q ss_pred CCCCEEEEcCC
Q 025075 87 TGMDLVIIPAG 97 (258)
Q Consensus 87 ~~aDiVIi~ag 97 (258)
+.+|++|.+.|
T Consensus 77 ~~adi~vtaTG 87 (162)
T PF00670_consen 77 RDADIFVTATG 87 (162)
T ss_dssp TT-SEEEE-SS
T ss_pred hhCCEEEECCC
Confidence 99999888765
No 481
>PRK06484 short chain dehydrogenase; Validated
Probab=96.14 E-value=0.077 Score=50.78 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=63.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCchHhh-------hCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQLENA-------LTGMD 90 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aD 90 (258)
+.+.|+||++.+|..++..|...|. +|++++++.+... ..++... .. .+. ++....++++. +...|
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~-~~~~D~~~~~~~~~~~~~~~~~~g~iD 81 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPD-HH-ALAMDVSDEAQIREGFEQLHREFGRID 81 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc-ee-EEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence 3688999999999999999999987 8999998764221 1112110 00 011 11111122222 24689
Q ss_pred EEEEcCCCCC---CC--CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075 91 LVIIPAGVPR---KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 91 iVIi~ag~~~---~~--g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN 138 (258)
++|+++|... .+ ..+- ...+..|+. +.+.+.+.+.+....+.+++++.
T Consensus 82 ~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS 141 (520)
T PRK06484 82 VLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVAS 141 (520)
T ss_pred EEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 9999998621 11 1111 223445544 44555555544333346766664
No 482
>PLN02306 hydroxypyruvate reductase
Probab=96.12 E-value=0.043 Score=51.07 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=58.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCChhHH---HHHhcC---CCCCeEEEEeCCCchHhhhCCCCEE
Q 025075 20 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISHM---DTGAVVRGFLGQPQLENALTGMDLV 92 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~g~~---~dl~~~---~~~~~v~~~~~~~d~~~a~~~aDiV 92 (258)
.++|+|||. |.+|+.++..+. .-|. +|..||........ ..+... ....... .....++++.++.||+|
T Consensus 165 gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 165 GQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVT-WKRASSMEEVLREADVI 240 (386)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccc-ccccCCHHHHHhhCCEE
Confidence 368999998 999999998875 4565 89999986531110 011000 0000011 01124788999999999
Q ss_pred EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075 93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137 (258)
Q Consensus 93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t 137 (258)
++.+-. .+ ++ -.++. .+.+....|++++||++
T Consensus 241 ~lh~Pl--t~-~T--------~~lin--~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 241 SLHPVL--DK-TT--------YHLIN--KERLALMKKEAVLVNAS 272 (386)
T ss_pred EEeCCC--Ch-hh--------hhhcC--HHHHHhCCCCeEEEECC
Confidence 997521 11 11 11111 12233445889999987
No 483
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.11 E-value=0.055 Score=51.16 Aligned_cols=129 Identities=18% Similarity=0.287 Sum_probs=73.9
Q ss_pred eEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 22 KVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 22 KI~IIGa~G~VG~~-~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
||.++|. |..|.+ +|..|...|. +|..+|.+... ...+|... .+....+ .+ .+.++++|+||.+.|+|.
T Consensus 1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~----gi~~~~g-~~-~~~~~~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEAL----GIPIYIG-HS-AENLDDADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHC----cCEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence 4889998 999998 8999999998 89999976543 22234322 2222223 33 356789999999988875
Q ss_pred CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe--cCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075 101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAGTYDPKKLL 163 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPvd~~~~i~t~~~~~~~~~~~~kvi 163 (258)
..- ........+++++.+.- .+.+...+..+|-+ ||==.+.+.+++.+++..+ +++.-++
T Consensus 71 ~~p-~~~~a~~~~i~v~~~~e-l~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g-~~~~~~~ 132 (448)
T TIGR01082 71 DNP-EIVEAKERGIPVIRRAE-MLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG-LDPTVVV 132 (448)
T ss_pred CCH-HHHHHHHcCCceEeHHH-HHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC-CCCeEEE
Confidence 321 12222234555443221 12122111123334 5655566677888777654 5443333
No 484
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.11 E-value=0.037 Score=52.31 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=74.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--H-HHHhcCCCCCeEEEEeCC-Cch---HhhhCCCCEEEE
Q 025075 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--T-ADISHMDTGAVVRGFLGQ-PQL---ENALTGMDLVII 94 (258)
Q Consensus 22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~-~dl~~~~~~~~v~~~~~~-~d~---~~a~~~aDiVIi 94 (258)
||.|+|+ |..|.+.+..|...|. +|.++|.+..... . ..|.... +....+. .++ .+.+.+.|.||.
T Consensus 2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQEG----ITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHcC----CEEEECCccchhhhhHHhhcCCEEEE
Confidence 7999998 9999999999999997 8999998764211 1 1133221 2212221 111 135788999999
Q ss_pred cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe--cCCCCCcHHHHHHHHHHhC
Q 025075 95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAG 155 (258)
Q Consensus 95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPvd~~~~i~t~~~~~~~ 155 (258)
+.|.+... .........+++++.++.-..+... +..+|-+ ||-=.+.+.+++.++...+
T Consensus 75 s~gi~~~~-~~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 75 SPGIPWDH-PTLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred CCCCCCCC-HHHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 98886432 1122223456666665544333222 2223444 5655566778888887654
No 485
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.09 E-value=0.096 Score=50.49 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEE-----------eCCCch--
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF-----------LGQPQL-- 82 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~-----------~~~~d~-- 82 (258)
..++.||+|+|+ |.+|...+..+...|- +|..+|+++++ .++..+.-. + ..+... ..+.++
T Consensus 162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~-~-v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAE-F-LELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCe-E-EEeccccccccccchhhhcchhHHH
Confidence 344679999998 9999998888888885 79999998752 222222111 0 001000 001121
Q ss_pred ------HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075 83 ------ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139 (258)
Q Consensus 83 ------~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 139 (258)
.+.++++|+||.|+|.|.++... -+.++..+.+ .|.+.++.++-+
T Consensus 237 ~~~~~~~~~~~gaDVVIetag~pg~~aP~---------lit~~~v~~m---kpGgvIVdvg~~ 287 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTALIPGKPAPK---------LITAEMVASM---KPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHhccCCCCEEEECCCCCcccCcc---------hHHHHHHHhc---CCCCEEEEEccC
Confidence 12246899999999987543220 1124444444 488888887764
No 486
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.09 E-value=0.019 Score=51.17 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=44.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
.++|+|||.+|.||..++..|...|. .|.++... +.++.+.+++||+||.+.|.|
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg~~ 212 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIGRG 212 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecCcc
Confidence 35899999999999999999998886 77776211 225667899999999998855
No 487
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.055 Score=51.04 Aligned_cols=127 Identities=19% Similarity=0.276 Sum_probs=73.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
++|.|+|+ |..|.+.+..|..+|. +|.++|.+........|.... ..+....+..+ .+.+.++|+||.+.|+|.
T Consensus 6 ~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~--~gi~~~~g~~~-~~~~~~~d~vv~spgi~~ 79 (445)
T PRK04308 6 KKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMF--DGLVFYTGRLK-DALDNGFDILALSPGISE 79 (445)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhcc--CCcEEEeCCCC-HHHHhCCCEEEECCCCCC
Confidence 58999998 9999999999999997 899999866421112233211 12332333322 234579999999999874
Q ss_pred CCCCchhhHHHHhHHHH--HHHHHHhhhhCCCcEEEEe--cCCCCCcHHHHHHHHHHhC
Q 025075 101 KPGMTRDDLFNINAGIV--RTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAG 155 (258)
Q Consensus 101 ~~g~~r~d~~~~n~~i~--~~i~~~i~~~~p~a~viv~--tNPvd~~~~i~t~~~~~~~ 155 (258)
..- ......+.+++++ .+++..+.+. .+..+|-+ ||==.+.+.+++.+++..+
T Consensus 80 ~~p-~~~~a~~~~i~v~~~~~~~~~~~~~-~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 80 RQP-DIEAFKQNGGRVLGDIELLADIVNR-RGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred CCH-HHHHHHHcCCcEEEhHHHHHHhhhc-CCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 321 1111223455554 2233232221 12233444 5555566778888887654
No 488
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.09 E-value=0.066 Score=44.69 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=71.4
Q ss_pred HHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHH-HHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchH
Q 025075 6 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLE 83 (258)
Q Consensus 6 ~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~-~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~ 83 (258)
.+++-+.+.-+-.++.+|.|||+ |.+|.+++. ....+.-..-+..+|+++. -|.. ..+ ..+.. -++++
T Consensus 70 ~L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~--~~~----v~V~~---~d~le 139 (211)
T COG2344 70 YLRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK--IGD----VPVYD---LDDLE 139 (211)
T ss_pred HHHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc--cCC----eeeec---hHHHH
Confidence 34444555556677889999998 999999975 4444444567889999874 1211 111 12332 24566
Q ss_pred hhhC--CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 84 NALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 84 ~a~~--~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
+-++ |.|+.|+|.. .+-.+++++.+.+.+-+++ +++| |+.
T Consensus 140 ~~v~~~dv~iaiLtVP----------------a~~AQ~vad~Lv~aGVkGI-lNFt-Pv~ 181 (211)
T COG2344 140 KFVKKNDVEIAILTVP----------------AEHAQEVADRLVKAGVKGI-LNFT-PVR 181 (211)
T ss_pred HHHHhcCccEEEEEcc----------------HHHHHHHHHHHHHcCCceE-Eecc-ceE
Confidence 6676 8999999962 3345788899998887775 4566 777
No 489
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.07 E-value=0.04 Score=49.73 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=59.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
.++|+|||- |.+|+.++..+..-|. +|..||+.... .+. .+. ..++++.++.||+|++..-
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~------~~~----~~~----~~~l~ell~~sDvv~lh~P-- 205 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN------KNE----EYE----RVSLEELLKTSDIISIHAP-- 205 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc------ccc----Cce----eecHHHHhhcCCEEEEeCC--
Confidence 468999997 9999999998876666 89999974311 011 111 1257889999999999862
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN 141 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd 141 (258)
..+ ++|. ++ | ++. +.+..|++++||++= =+|
T Consensus 206 lt~-~T~~-li--~----~~~---~~~Mk~~a~lIN~aRG~vVD 238 (311)
T PRK08410 206 LNE-KTKN-LI--A----YKE---LKLLKDGAILINVGRGGIVN 238 (311)
T ss_pred CCc-hhhc-cc--C----HHH---HHhCCCCeEEEECCCccccC
Confidence 211 1111 11 1 222 333458999999873 355
No 490
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.064 Score=51.07 Aligned_cols=126 Identities=17% Similarity=0.121 Sum_probs=70.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hh-HH-HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g-~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
..||.|||+ |.+|..+|..|...|. +|.++|.... .. .. ..|... .+....+. +. +...++|+||++.
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECC
Confidence 458999998 9999999999998887 8999996543 11 11 123222 22222222 11 2356799999999
Q ss_pred CCCCCCCCchhhHHHHhHHHHHH--HHHHhhhhCCCcEEEEec--CCCCCcHHHHHHHHHHhC
Q 025075 97 GVPRKPGMTRDDLFNINAGIVRT--LCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKAG 155 (258)
Q Consensus 97 g~~~~~g~~r~d~~~~n~~i~~~--i~~~i~~~~p~a~viv~t--NPvd~~~~i~t~~~~~~~ 155 (258)
|++..... .......+++++.+ ++-.+.+...+..+|-+| |==.+.+.+++.+++..+
T Consensus 87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 88643211 11112334555433 222222111233344454 544456677777776643
No 491
>PRK06046 alanine dehydrogenase; Validated
Probab=95.99 E-value=0.034 Score=50.50 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
...+|+|||+ |..|...+..+....-++++.++|++.++.. +.++.+. ....+.. ..|++++++ +|+|+++.
T Consensus 128 ~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~---~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 128 DSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTV---AEDIEEACD-CDILVTTT 201 (326)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEE---eCCHHHHhh-CCEEEEec
Confidence 3468999997 9999998887765455689999999875322 2223221 1222332 246777786 99999875
No 492
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=95.98 E-value=0.09 Score=47.03 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=89.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh---HHHHHhcCCCCCeEEE-EeCCCchHhhhC--CCCEEEE
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVII 94 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g---~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aDiVIi 94 (258)
|++.|+|++||+|+++...+..+..-.+|+.+|.-.-.| ...++.+..-..-++. +.....+.+.++ +.|.|+.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 589999999999999998777665545788888743222 2233443321111221 111122345556 6899999
Q ss_pred cCCCCC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEE-EecCCCC-CcHHHHHHHHHHhCCCCCCcEEEEeeccH
Q 025075 95 PAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN-LISNPVN-STVPIAAEVFKKAGTYDPKKLLGVTMLDV 170 (258)
Q Consensus 95 ~ag~~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~vi-v~tNPvd-~~~~i~t~~~~~~~~~~~~kviG~t~lds 170 (258)
.|.-.- +.=..-.++++.|+--...+.+.++++...-.++ |.|.-|= .+.. -...+-+.+.+.|+....-+.-.+
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~-~~~~FtE~tp~~PsSPYSASKAas 159 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGL-DDDAFTETTPYNPSSPYSASKAAS 159 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccC-CCCCcccCCCCCCCCCcchhhhhH
Confidence 764211 0001225678889999999999999987543333 3332110 0000 000111334466666665543333
Q ss_pred HHHHHHHHHHhCCCC
Q 025075 171 VRANTFVAEVLGLDP 185 (258)
Q Consensus 171 ~R~~~~la~~l~v~~ 185 (258)
--+-+...+-+|++.
T Consensus 160 D~lVray~~TYglp~ 174 (340)
T COG1088 160 DLLVRAYVRTYGLPA 174 (340)
T ss_pred HHHHHHHHHHcCCce
Confidence 334455556666654
No 493
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.98 E-value=0.2 Score=48.04 Aligned_cols=129 Identities=17% Similarity=0.143 Sum_probs=72.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 100 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~ 100 (258)
.||.|+|. |..|.+++..|...|. +|..+|.+.......+|..... .+....+..+ .+.+.++|+||.+.|++.
T Consensus 8 ~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~~--~~~~~~g~~~-~~~~~~~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAELP--DAEFVGGPFD-PALLDGVDLVALSPGLSP 81 (498)
T ss_pred CEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhcC--CcEEEeCCCc-hhHhcCCCEEEECCCCCC
Confidence 48999998 9999999999999997 8999997653211122433211 1222222223 356789999999988875
Q ss_pred CCCCchhhH---HHHhHHHH------HHHHHHhhh--hCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075 101 KPGMTRDDL---FNINAGIV------RTLCEGIAK--CCPNATVNLISNPVNSTVPIAAEVFKKAG 155 (258)
Q Consensus 101 ~~g~~r~d~---~~~n~~i~------~~i~~~i~~--~~p~a~viv~tNPvd~~~~i~t~~~~~~~ 155 (258)
........+ -..|++++ ..+.+.+.. +.+..+-|-=||==.+.+.+++.+++..+
T Consensus 82 ~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 82 LEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred cccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 321111111 12233333 222222211 12222222225665567778888887654
No 494
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.96 E-value=0.035 Score=50.23 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=56.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 99 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~ 99 (258)
.++|+|||. |.+|+.++..+..-|. +|..||..... +. . . ...++++.++.||+|++....
T Consensus 147 gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~~----~~-~------~----~~~~l~ell~~sDiv~l~~Pl- 207 (314)
T PRK06932 147 GSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGAS----VC-R------E----GYTPFEEVLKQADIVTLHCPL- 207 (314)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCccc----cc-c------c----ccCCHHHHHHhCCEEEEcCCC-
Confidence 368999998 9999999998887776 88888863210 00 0 0 013578999999999998632
Q ss_pred CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075 100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138 (258)
Q Consensus 100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN 138 (258)
.+. ++. ++ | ++. +.+..|++++||++=
T Consensus 208 -t~~-T~~-li--~----~~~---l~~mk~ga~lIN~aR 234 (314)
T PRK06932 208 -TET-TQN-LI--N----AET---LALMKPTAFLINTGR 234 (314)
T ss_pred -ChH-Hhc-cc--C----HHH---HHhCCCCeEEEECCC
Confidence 111 110 11 1 222 333358899999873
No 495
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.93 E-value=0.051 Score=50.33 Aligned_cols=33 Identities=30% Similarity=0.582 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 55 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~ 55 (258)
.||.|+|+ |.+|+.++..|+..|. ++|.|+|.+
T Consensus 136 ~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 48999998 9999999999999986 699999987
No 496
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.92 E-value=0.028 Score=51.00 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 96 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a 96 (258)
+.++|+|||- |.+|..+|..|...|+ +|+.+|.... ..+..... .... .++.++++.||+|+++.
T Consensus 15 kgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~~---s~~~A~~~---G~~v----~sl~Eaak~ADVV~llL 79 (335)
T PRK13403 15 QGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPGK---SFEVAKAD---GFEV----MSVSEAVRTAQVVQMLL 79 (335)
T ss_pred CcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcch---hhHHHHHc---CCEE----CCHHHHHhcCCEEEEeC
Confidence 3458999998 9999999999999998 8999985421 11111111 1111 25679999999999986
No 497
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.92 E-value=0.017 Score=48.80 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=26.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe
Q 025075 21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD 53 (258)
Q Consensus 21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D 53 (258)
|||+|||++|.+|+.++..+.+.|+ +|.+-|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~--~v~~~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL--GVYIKK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC--EEEECC
Confidence 6999999999999999999998887 555433
No 498
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.92 E-value=0.043 Score=50.99 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChh--HHHHHhcCCCCC-eEEEEeCCCchHhhhCCCCEEEEc
Q 025075 20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPG--VTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIP 95 (258)
Q Consensus 20 ~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVIi~ 95 (258)
...++|||+ |..+...+..+.. .+.+++|.+||+++++. .+.++.+..... .+.. ..+.++++++||+|+.+
T Consensus 155 a~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~---~~s~~eav~~ADIVvta 230 (379)
T PRK06199 155 SKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV---VDSIEEVVRGSDIVTYC 230 (379)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE---eCCHHHHHcCCCEEEEc
Confidence 458999997 9999888777665 44468999999988633 233444321111 2332 35678999999998876
Q ss_pred C
Q 025075 96 A 96 (258)
Q Consensus 96 a 96 (258)
.
T Consensus 231 T 231 (379)
T PRK06199 231 N 231 (379)
T ss_pred c
Confidence 4
No 499
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=95.91 E-value=0.03 Score=46.50 Aligned_cols=116 Identities=20% Similarity=0.182 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCC----eEEEEeCCCchHhhhCCCCEE
Q 025075 17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA----VVRGFLGQPQLENALTGMDLV 92 (258)
Q Consensus 17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~----~v~~~~~~~d~~~a~~~aDiV 92 (258)
.+++|..-|+||+|.+|.-+...+.+.+.++.|+++-+.+. -+..... ...++.--.++.+++++-|+.
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~-------~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~ 87 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL-------PDPATDKVVAQVEVDFSKLSQLATNEQGPDVL 87 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccC-------CCccccceeeeEEechHHHHHHHhhhcCCceE
Confidence 45677899999999999999999999999999999977532 1111111 111111123566788999999
Q ss_pred EEcCCCCC-CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075 93 IIPAGVPR-KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141 (258)
Q Consensus 93 Ii~ag~~~-~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd 141 (258)
+++-|.-| +.|-+ .+..-.-+.+.+.++..++.+-+.++++.|--.|
T Consensus 88 FcaLgTTRgkaGad--gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd 135 (238)
T KOG4039|consen 88 FCALGTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD 135 (238)
T ss_pred EEeecccccccccC--ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC
Confidence 99876543 33321 1222334556667777776666667776654444
No 500
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.91 E-value=0.052 Score=48.77 Aligned_cols=75 Identities=24% Similarity=0.208 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEE-eCCCchHhhhCCCCEEEEcCC
Q 025075 19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIPAG 97 (258)
Q Consensus 19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~-~~~~d~~~a~~~aDiVIi~ag 97 (258)
.+-||+|||+ |.+|..-+......| .+|.+.|.+..+-..+|-. +..++... +...+++++++.+|+||-+.-
T Consensus 167 ~~~kv~iiGG-GvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~---f~~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 167 LPAKVVVLGG-GVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDL---FGGRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCccEEEECC-ccccchHHHHHhccC--CeeEEEecCHHHHhhhhHh---hCceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 4469999999 999999887666544 3899999986543333322 22244432 333478999999999998764
Q ss_pred CC
Q 025075 98 VP 99 (258)
Q Consensus 98 ~~ 99 (258)
+|
T Consensus 241 Ip 242 (371)
T COG0686 241 IP 242 (371)
T ss_pred ec
Confidence 43
Done!