Query 025076
Match_columns 258
No_of_seqs 204 out of 1794
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 3.8E-31 8.3E-36 228.6 23.9 153 31-187 30-184 (223)
2 COG0586 DedA Uncharacterized m 99.9 2.3E-25 5.1E-30 191.1 18.3 154 36-195 3-170 (208)
3 PRK10847 hypothetical protein; 99.9 4E-24 8.7E-29 184.9 19.2 153 38-192 17-181 (219)
4 PF09335 SNARE_assoc: SNARE as 99.9 3E-22 6.6E-27 157.0 12.6 119 66-188 1-123 (123)
5 KOG3140 Predicted membrane pro 99.7 3.2E-17 6.9E-22 144.9 11.6 187 36-229 82-270 (275)
6 COG1238 Predicted membrane pro 99.6 1.4E-13 3E-18 113.0 15.0 145 38-190 9-157 (161)
7 PF06695 Sm_multidrug_ex: Puta 97.1 0.0075 1.6E-07 47.4 10.3 98 80-179 14-119 (121)
8 PRK01844 hypothetical protein; 86.6 1.3 2.7E-05 31.5 4.0 32 82-113 3-34 (72)
9 PRK11281 hypothetical protein; 83.5 70 0.0015 34.5 17.3 27 166-192 685-712 (1113)
10 PRK00523 hypothetical protein; 81.6 2.8 6.1E-05 29.7 4.0 29 85-113 7-35 (72)
11 PF11337 DUF3139: Protein of u 76.6 6.7 0.00015 28.5 4.9 22 28-49 29-50 (85)
12 PF06695 Sm_multidrug_ex: Puta 76.3 11 0.00025 29.3 6.5 54 38-98 64-120 (121)
13 PF07172 GRP: Glycine rich pro 76.2 7.7 0.00017 29.1 5.2 18 231-248 30-47 (95)
14 COG3763 Uncharacterized protei 76.1 3.6 7.9E-05 29.0 3.1 30 83-112 4-33 (71)
15 PRK11677 hypothetical protein; 75.9 6.1 0.00013 31.6 4.9 25 86-110 3-27 (134)
16 PF11368 DUF3169: Protein of u 75.6 3.9 8.4E-05 35.9 4.1 17 165-181 9-25 (248)
17 PF03672 UPF0154: Uncharacteri 73.5 3.5 7.6E-05 28.6 2.5 25 88-112 2-26 (64)
18 KOG3140 Predicted membrane pro 72.3 68 0.0015 28.8 11.1 141 34-187 31-173 (275)
19 COG0398 Uncharacterized conser 71.6 67 0.0014 27.8 15.9 84 29-113 32-116 (223)
20 PF02417 Chromate_transp: Chro 64.5 78 0.0017 25.9 10.7 81 42-130 31-112 (169)
21 PF09335 SNARE_assoc: SNARE as 63.9 36 0.00077 25.6 6.8 61 37-104 60-121 (123)
22 COG4858 Uncharacterized membra 62.5 35 0.00077 29.0 6.8 61 165-234 162-222 (226)
23 PF12263 DUF3611: Protein of u 62.1 27 0.00059 29.4 6.2 37 145-182 1-37 (183)
24 PF15201 Rod_cone_degen: Progr 62.1 18 0.00039 23.5 3.8 23 219-241 10-32 (54)
25 COG2426 Predicted membrane pro 61.7 69 0.0015 25.4 7.8 56 125-181 73-131 (142)
26 COG1620 LldP L-lactate permeas 59.5 1.8E+02 0.004 28.5 12.8 65 31-95 82-153 (522)
27 PF03773 DUF318: Predicted per 59.3 1.4E+02 0.0029 27.0 11.8 42 136-178 53-95 (307)
28 TIGR02359 thiW thiW protein. L 59.2 20 0.00043 29.6 4.7 33 67-99 32-64 (160)
29 PF11990 DUF3487: Protein of u 58.9 86 0.0019 24.5 8.3 12 124-135 86-97 (121)
30 TIGR03802 Asp_Ala_antiprt aspa 58.4 86 0.0019 31.0 9.9 67 97-181 65-132 (562)
31 COG4956 Integral membrane prot 58.3 90 0.0019 28.7 9.0 86 90-191 41-131 (356)
32 PF07155 ECF-ribofla_trS: ECF- 58.0 17 0.00037 29.5 4.3 32 68-100 38-69 (169)
33 TIGR00937 2A51 chromate transp 57.5 1.1E+02 0.0023 28.7 9.9 64 43-107 233-297 (368)
34 PF06295 DUF1043: Protein of u 55.6 19 0.00042 28.3 4.0 22 89-110 2-23 (128)
35 PF05545 FixQ: Cbb3-type cytoc 51.6 25 0.00053 22.7 3.4 14 230-243 35-48 (49)
36 PF01148 CTP_transf_1: Cytidyl 51.3 48 0.001 28.4 6.2 38 86-126 132-169 (259)
37 PF05568 ASFV_J13L: African sw 50.3 27 0.00059 28.3 4.0 8 247-254 75-82 (189)
38 PF06570 DUF1129: Protein of u 49.7 41 0.00088 28.6 5.4 60 161-230 144-203 (206)
39 PF01102 Glycophorin_A: Glycop 48.8 26 0.00056 27.5 3.7 20 211-230 74-94 (122)
40 PF11139 DUF2910: Protein of u 48.8 1.6E+02 0.0034 24.9 9.0 59 165-227 32-90 (214)
41 TIGR03750 conj_TIGR03750 conju 48.4 1.3E+02 0.0027 23.3 8.1 12 124-135 83-94 (111)
42 COG4852 Predicted membrane pro 48.4 1.3E+02 0.0028 23.5 8.8 48 35-82 30-83 (134)
43 TIGR00771 DcuC c4-dicarboxylat 48.3 78 0.0017 29.7 7.5 21 211-231 148-168 (388)
44 PRK11624 cdsA CDP-diglyceride 47.8 21 0.00046 32.1 3.5 37 87-125 155-191 (285)
45 PF10828 DUF2570: Protein of u 47.7 42 0.00091 25.6 4.7 24 3-26 1-24 (110)
46 PRK13661 hypothetical protein; 47.7 36 0.00078 28.6 4.6 32 68-100 40-71 (182)
47 COG4736 CcoQ Cbb3-type cytochr 47.2 22 0.00048 24.4 2.7 21 207-227 13-33 (60)
48 COG1238 Predicted membrane pro 46.9 85 0.0018 25.9 6.6 66 129-195 12-82 (161)
49 PRK14094 psbM photosystem II r 45.6 50 0.0011 21.4 3.9 20 233-252 30-49 (50)
50 COG0575 CdsA CDP-diglyceride s 45.2 25 0.00055 31.1 3.6 27 86-112 136-162 (265)
51 COG2426 Predicted membrane pro 45.0 58 0.0012 25.9 5.0 55 36-97 72-129 (142)
52 PRK01637 hypothetical protein; 44.3 1.9E+02 0.0041 25.7 9.1 42 149-191 187-228 (286)
53 PF11139 DUF2910: Protein of u 44.2 2E+02 0.0042 24.3 12.3 19 122-140 180-198 (214)
54 TIGR00937 2A51 chromate transp 43.7 2.5E+02 0.0053 26.2 10.0 67 41-107 22-89 (368)
55 PF07332 DUF1469: Protein of u 42.6 1.4E+02 0.0031 22.6 7.1 29 81-109 70-98 (121)
56 PF09945 DUF2177: Predicted me 42.1 1.7E+02 0.0038 23.1 9.0 78 3-82 1-85 (128)
57 PF09512 ThiW: Thiamine-precur 41.6 37 0.00081 27.6 3.6 14 71-84 33-46 (150)
58 PF05170 AsmA: AsmA family; I 40.2 50 0.0011 32.5 5.1 40 3-45 1-41 (604)
59 PF09771 Tmemb_18A: Transmembr 39.2 1.2E+02 0.0026 24.0 6.0 42 5-50 29-70 (125)
60 PF01810 LysE: LysE type trans 39.2 1.2E+02 0.0027 24.7 6.7 41 144-187 5-45 (191)
61 PRK03818 putative transporter; 38.4 3.2E+02 0.0069 27.0 10.3 67 97-182 68-136 (552)
62 PF12822 DUF3816: Protein of u 37.3 40 0.00087 27.2 3.4 28 72-99 34-61 (172)
63 TIGR00949 2A76 The Resistance 37.1 1.6E+02 0.0035 23.9 7.0 34 145-179 1-36 (185)
64 COG3493 CitS Na+/citrate sympo 37.0 3.8E+02 0.0081 25.5 11.8 24 122-145 98-121 (438)
65 COG4732 Predicted membrane pro 36.6 45 0.00098 27.3 3.3 30 66-95 37-66 (177)
66 TIGR02230 ATPase_gene1 F0F1-AT 35.2 2E+02 0.0043 21.8 7.6 22 204-225 75-96 (100)
67 COG3086 RseC Positive regulato 34.8 1.1E+02 0.0024 24.9 5.3 24 87-110 104-127 (150)
68 PF10063 DUF2301: Uncharacteri 34.2 2.3E+02 0.005 22.7 7.0 42 148-190 50-93 (135)
69 PF04246 RseC_MucC: Positive r 33.0 1.5E+02 0.0032 23.1 5.9 36 75-110 83-120 (135)
70 PF01102 Glycophorin_A: Glycop 32.7 83 0.0018 24.7 4.2 25 76-106 67-91 (122)
71 PRK10862 SoxR reducing system 31.0 1.4E+02 0.0031 24.2 5.6 24 87-110 104-127 (154)
72 PRK11056 hypothetical protein; 30.3 2.4E+02 0.0051 22.1 6.3 74 124-199 13-88 (120)
73 COG4064 MtrG Tetrahydromethano 30.1 91 0.002 22.0 3.6 22 77-98 51-72 (75)
74 PRK04972 putative transporter; 29.3 4.3E+02 0.0094 26.1 9.6 72 97-187 67-140 (558)
75 PF07290 DUF1449: Protein of u 29.3 2.7E+02 0.0059 23.7 7.2 64 182-248 76-139 (202)
76 PF14143 YrhC: YrhC-like prote 29.3 2.1E+02 0.0046 20.3 5.7 14 177-190 18-31 (72)
77 PF07226 DUF1422: Protein of u 29.2 2.7E+02 0.0058 21.7 6.4 74 124-199 13-88 (117)
78 COG3105 Uncharacterized protei 29.0 1.7E+02 0.0038 23.2 5.4 26 85-110 7-32 (138)
79 PF03672 UPF0154: Uncharacteri 28.8 73 0.0016 22.1 2.9 20 212-231 5-24 (64)
80 PF09512 ThiW: Thiamine-precur 28.5 3.3E+02 0.0071 22.2 7.6 48 62-109 65-117 (150)
81 PF04341 DUF485: Protein of un 28.3 2.4E+02 0.0052 20.6 6.2 17 216-232 65-81 (91)
82 PF02652 Lactate_perm: L-lacta 28.2 5.8E+02 0.013 25.1 14.9 65 31-95 80-151 (522)
83 PF14143 YrhC: YrhC-like prote 28.2 2.2E+02 0.0048 20.2 6.3 32 39-70 3-34 (72)
84 PF12273 RCR: Chitin synthesis 28.1 41 0.00088 26.3 1.8 18 5-22 1-18 (130)
85 PF03596 Cad: Cadmium resistan 28.0 2.8E+02 0.0061 23.5 7.0 10 206-215 56-65 (191)
86 PRK09304 arginine exporter pro 27.9 3.6E+02 0.0078 22.5 8.2 26 135-160 8-33 (207)
87 COG2323 Predicted membrane pro 27.9 1.4E+02 0.0029 26.1 5.2 26 229-257 86-111 (224)
88 PRK01844 hypothetical protein; 27.8 1.1E+02 0.0024 21.7 3.8 29 208-236 8-36 (72)
89 PF12270 Cyt_c_ox_IV: Cytochro 27.7 3.2E+02 0.007 21.9 7.1 32 217-248 48-80 (137)
90 PF07178 TraL: TraL protein; 27.6 2.1E+02 0.0046 21.0 5.6 41 64-106 16-56 (95)
91 PLN02309 5'-adenylylsulfate re 27.3 37 0.00081 32.7 1.8 18 239-256 295-312 (457)
92 KOG1277 Endosomal membrane pro 26.7 1E+02 0.0022 30.0 4.4 46 208-254 236-281 (593)
93 PRK13707 conjugal transfer pil 26.5 1.9E+02 0.0042 21.7 5.2 41 64-106 22-62 (101)
94 PF12794 MscS_TM: Mechanosensi 26.4 5.1E+02 0.011 23.8 18.0 23 56-81 50-72 (340)
95 TIGR02762 TraL_TIGR type IV co 26.1 2.1E+02 0.0046 21.2 5.3 34 65-100 17-50 (95)
96 PF09842 DUF2069: Predicted me 26.0 3E+02 0.0065 21.0 7.2 36 134-174 28-63 (109)
97 PF09946 DUF2178: Predicted me 25.4 58 0.0013 25.0 2.2 20 211-230 31-50 (111)
98 PRK12821 aspartyl/glutamyl-tRN 25.3 1E+02 0.0022 29.8 4.1 25 72-96 101-125 (477)
99 PF12606 RELT: Tumour necrosis 24.9 1.4E+02 0.0031 19.6 3.7 14 219-232 19-32 (50)
100 PF06305 DUF1049: Protein of u 24.7 2.2E+02 0.0048 19.0 5.0 9 122-130 55-63 (68)
101 PF15048 OSTbeta: Organic solu 24.6 1E+02 0.0023 24.3 3.4 21 202-222 32-52 (125)
102 COG2261 Predicted membrane pro 23.3 2.3E+02 0.005 20.7 4.8 32 76-107 43-79 (82)
103 PF03606 DcuC: C4-dicarboxylat 23.3 94 0.002 29.9 3.7 20 212-231 207-226 (465)
104 COG2864 FdnI Cytochrome b subu 23.0 2.2E+02 0.0047 24.7 5.4 22 6-27 119-140 (218)
105 COG1300 SpoIIM Uncharacterized 22.7 4.9E+02 0.011 22.2 8.9 32 71-102 85-116 (207)
106 PRK00523 hypothetical protein; 22.7 1.6E+02 0.0035 20.9 3.8 24 211-234 12-35 (72)
107 PF06194 Phage_Orf51: Phage Co 22.6 29 0.00064 24.8 0.0 13 245-257 41-53 (80)
108 TIGR01167 LPXTG_anchor LPXTG-m 22.4 89 0.0019 18.0 2.2 17 211-227 15-31 (34)
109 PF09726 Macoilin: Transmembra 22.3 4.7E+02 0.01 26.8 8.5 50 30-79 55-107 (697)
110 COG4615 PvdE ABC-type sideroph 21.9 7.4E+02 0.016 24.1 9.7 21 142-162 105-126 (546)
111 PF13974 YebO: YebO-like prote 21.9 2.4E+02 0.0052 20.5 4.6 50 88-147 3-52 (80)
112 PF03390 2HCT: 2-hydroxycarbox 21.5 7.2E+02 0.016 23.8 15.5 24 122-145 81-104 (414)
113 TIGR00145 FTR1 family protein. 21.5 2.9E+02 0.0063 24.9 6.2 23 205-227 75-97 (283)
114 PRK14780 lipoprotein signal pe 21.4 1.5E+02 0.0033 26.4 4.3 21 226-246 224-244 (263)
115 PF10319 7TM_GPCR_Srj: Serpent 21.3 4E+02 0.0086 24.4 7.1 61 80-146 195-255 (310)
116 PF07672 MFS_Mycoplasma: Mycop 20.8 1.6E+02 0.0034 26.4 4.3 19 159-178 8-26 (267)
117 PF10960 DUF2762: Protein of u 20.7 1.7E+02 0.0036 20.7 3.6 16 36-51 2-17 (71)
118 TIGR00424 APS_reduc 5'-adenyly 20.6 62 0.0013 31.3 1.8 18 239-256 300-317 (463)
119 COG2056 Predicted permease [Ge 20.5 1.9E+02 0.0042 27.3 4.9 24 207-230 194-218 (444)
120 PRK10229 threonine efflux syst 20.5 4.9E+02 0.011 21.5 8.4 45 138-185 11-55 (206)
121 PF07399 DUF1504: Protein of u 20.5 7.7E+02 0.017 23.7 10.5 32 79-110 68-101 (438)
122 COG0586 DedA Uncharacterized m 20.2 5.3E+02 0.012 21.7 13.6 21 139-159 132-152 (208)
123 PRK03072 heat shock protein Ht 20.2 2.6E+02 0.0057 25.0 5.7 35 75-110 23-57 (288)
124 PRK12287 tqsA pheromone autoin 20.2 6.6E+02 0.014 22.8 10.0 26 54-79 208-233 (344)
125 PRK10478 putative PTS system f 20.1 7.2E+02 0.016 23.2 13.8 21 211-231 321-341 (359)
126 COG4854 Predicted membrane pro 20.0 1.1E+02 0.0025 23.7 2.8 24 207-230 31-54 (126)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.8e-31 Score=228.61 Aligned_cols=153 Identities=25% Similarity=0.441 Sum_probs=142.9
Q ss_pred CchhhHHHHHHHHHHcCchHHHH-HHHHHHHHhhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Q 025076 31 DKDTGIKAIREWSDRLGVWAIPV-FVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFK 109 (258)
Q Consensus 31 ~~~~~~~~l~~~~~~~g~~~~~i-~~~l~~~~~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~~g~ 109 (258)
...++.+.+++|++++|.+++++ |++.++...++++|+++ +++++|++||++.|++++++|+++|+.++|+++|++|+
T Consensus 30 ~~~~~~~~l~~~i~~~g~~~pl~~fil~~l~~~~~~iP~~i-l~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr 108 (223)
T COG0398 30 VLLLDPETLREWIQAYGALGPLVFFILLYLVATLPIIPGSI-LTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGR 108 (223)
T ss_pred HhccCHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45678999999999999999988 66667777888899986 79999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccchHHHHHHHHhhhhhhhHhHhhhcccc-chhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHH
Q 025076 110 SSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPM-PSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGS 187 (258)
Q Consensus 110 ~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~Pi-P~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~ 187 (258)
+..+ +.++++++.+++++..+|+|+..+++.|++|+ |++++||++|++++++ ++|.++|.+|++|++++|+++|+
T Consensus 109 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~-~~f~ias~lG~~P~~i~y~~~G~ 184 (223)
T COG0398 109 DWVL--KFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISF-RDFAIATLLGKLPGTIVYTYLGS 184 (223)
T ss_pred HHHH--HHhcccHHHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcH-HHHHHHHHHhcccHHHHHHHHHH
Confidence 9887 67777789999999999999999999999996 9999999999999999 99999999999999999999997
No 2
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.94 E-value=2.3e-25 Score=191.10 Aligned_cols=154 Identities=24% Similarity=0.345 Sum_probs=129.6
Q ss_pred HHHHHHHHHH--cCchHHHHHHHHHHHH---hhccCChHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025076 36 IKAIREWSDR--LGVWAIPVFVGFHTLT---IALCLPYAVFFEAAASLL-----FGFFPAVLCVFSAKLLGASLSFWIGR 105 (258)
Q Consensus 36 ~~~l~~~~~~--~g~~~~~i~~~l~~~~---~~~~iP~~~~l~~~aG~l-----fG~~~g~~~~~~g~~lGa~i~y~igR 105 (258)
.+++..+.++ .++.+ +|+.++.+. ...|+|++++ .+.+|++ ++++..++.+++|+++|+.++|++||
T Consensus 3 ~~~~~~~~~~~~~~~~~--~f~~~f~e~~l~~~~~lPge~i-L~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr 79 (208)
T COG0586 3 MELLILWIQEGSLGYLG--VFLILFLESGLLVGPPLPGEVL-LLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGR 79 (208)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCCCCchHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554 33333 456666554 6789999985 6678887 45788899999999999999999999
Q ss_pred HhChhhhhhhhhhc----cchHHHHHHHHhhhhhhhHhHhhhccccchhhHHHhhhhccccccchhHHHHHHhHHHHHHH
Q 025076 106 LVFKSSNSAMEWAQ----RNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQ 181 (258)
Q Consensus 106 ~~g~~~i~~~~~~~----~~~~l~~~~~~~~k~g~~~v~l~Rl~PiP~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i 181 (258)
++|++..++ +-+ ++++++|.+++++|||.+.++++||+|.-++++++.||+++||+ ++|.+.|++|++.|..+
T Consensus 80 ~~G~~~l~~--~~~~~~~~~~~l~~a~~~f~r~G~~~vf~~RFip~vRt~ip~~AG~~~m~~-~~F~~~n~~ga~iW~~~ 156 (208)
T COG0586 80 RFGRKLLRK--LWSYRLLKRKKLDKAELLFERHGLFAIFLGRFIPGVRTLVPIVAGMSKMPL-RRFLLYNILGALLWALV 156 (208)
T ss_pred HhcHHHHHh--hhhhccCCHHHHHHHHHHHHHcCchhhhhhcccchhHhhhhHhhhhccCCh-HHHHHHHHHHHHHHHHH
Confidence 999998873 322 45789999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 025076 182 NTSIGSLAGAAVAS 195 (258)
Q Consensus 182 ~~~~G~~l~~~~~~ 195 (258)
++++|+.+++..+.
T Consensus 157 ~~~lGy~~G~~~~~ 170 (208)
T COG0586 157 LTLLGYLLGEVIDV 170 (208)
T ss_pred HHHHHHHhccchHH
Confidence 99999999988763
No 3
>PRK10847 hypothetical protein; Provisional
Probab=99.92 E-value=4e-24 Score=184.88 Aligned_cols=153 Identities=24% Similarity=0.325 Sum_probs=127.6
Q ss_pred HHHHHHHHcCchHHH-HHHHHHHHH---hhccCChHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025076 38 AIREWSDRLGVWAIP-VFVGFHTLT---IALCLPYAVFFEAAASLLFG-------FFPAVLCVFSAKLLGASLSFWIGRL 106 (258)
Q Consensus 38 ~l~~~~~~~g~~~~~-i~~~l~~~~---~~~~iP~~~~l~~~aG~lfG-------~~~g~~~~~~g~~lGa~i~y~igR~ 106 (258)
.+.++++++|+|++. +|+..+... ..+++|++++ .+++|++.+ ++..++.+++|+++|+.++|++||+
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~-l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~ 95 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSL-LFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRL 95 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999998754 566666654 4467999984 667777743 5677899999999999999999999
Q ss_pred hChhhhhhh-hhhccchHHHHHHHHhhhhhhhHhHhhhccccchhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHH
Q 025076 107 VFKSSNSAM-EWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSI 185 (258)
Q Consensus 107 ~g~~~i~~~-~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~PiP~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~ 185 (258)
+|++..++. +...+++++++.+++++|||.+.++++|++|..++++|++||+++||+ ++|+++|.+|.++|+.+++++
T Consensus 96 ~G~~~l~~~~~~~~~~~~l~~~~~~~~r~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~-~~F~~~~~lg~~~W~~~~~~~ 174 (219)
T PRK10847 96 FGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPFVAGMGHMSY-RHFAAYNVIGALLWVLLFTYA 174 (219)
T ss_pred hCHHHhhccccccCCHHHHHHHHHHHHHcCCEEEEeeCCccchHhHHHHHhHhcCCCh-HHHHHHHHHHHHHHHHHHHHH
Confidence 999876521 111234679999999999999999999999997789999999999999 999999999999999999999
Q ss_pred HHHHHHH
Q 025076 186 GSLAGAA 192 (258)
Q Consensus 186 G~~l~~~ 192 (258)
|+.+++.
T Consensus 175 Gy~~g~~ 181 (219)
T PRK10847 175 GYFFGTL 181 (219)
T ss_pred HHHHcCC
Confidence 9998854
No 4
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.88 E-value=3e-22 Score=156.97 Aligned_cols=119 Identities=29% Similarity=0.451 Sum_probs=106.5
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhhhhhhccchH---HHHHHHHhhhhhhhHhHhh
Q 025076 66 LPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKY---FHILSRGVEKDGWKFVVLA 142 (258)
Q Consensus 66 iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~~g~~~i~~~~~~~~~~~---l~~~~~~~~k~g~~~v~l~ 142 (258)
+|+++ +.+++|+++|++.+++++.+|+++|+.++|++||+++++..+ ++..++++ +++.++.++|||...+++.
T Consensus 1 iP~~~-~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~ 77 (123)
T PF09335_consen 1 IPGSI-LLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLR--RKLRKKKRIKRIERIERWFQKYGFWVLFLS 77 (123)
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHhcchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 68887 578999999999999999999999999999999999976554 34444444 4459999999999999999
Q ss_pred hcccc-chhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHHH
Q 025076 143 RFSPM-PSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSL 188 (258)
Q Consensus 143 Rl~Pi-P~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~~ 188 (258)
|++|. |++++|+++|++++|+ ++|++++++|.+||+.+++++|++
T Consensus 78 ~~~P~~P~~~~~~~ag~~~~~~-~~f~~~~~~g~~~~~~~~~~~G~~ 123 (123)
T PF09335_consen 78 RFIPGLPFDVVNYLAGITRMPF-RRFFLASLIGKLPWTILYVLLGYL 123 (123)
T ss_pred HHHHHccHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99996 9999999999999999 999999999999999999999973
No 5
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.72 E-value=3.2e-17 Score=144.91 Aligned_cols=187 Identities=21% Similarity=0.310 Sum_probs=142.7
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhhh
Q 025076 36 IKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAM 115 (258)
Q Consensus 36 ~~~l~~~~~~~g~~~~~i~~~l~~~~~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~~g~~~i~~~ 115 (258)
-+.+.++.+++.....+.|++.|.....+.+|++.++++.+|++||.+.|++++..++++|+++||.+++.++|+.+.
T Consensus 82 ~~vl~~y~~~~~a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~-- 159 (275)
T KOG3140|consen 82 GAVLRKYKATYFAAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVL-- 159 (275)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHH--
Confidence 445556666776666778999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhhccchHHHHHHHHhhhhh-hhHhHhhhcccc-chhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 025076 116 EWAQRNKYFHILSRGVEKDG-WKFVVLARFSPM-PSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAV 193 (258)
Q Consensus 116 ~~~~~~~~l~~~~~~~~k~g-~~~v~l~Rl~Pi-P~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~~l~~~~ 193 (258)
++...+...-..+-..++++ +.++.+.|++|. |+++.|+++++.++++ +.|++++++|.+|..++++..|+.+++..
T Consensus 160 ~l~p~~~~~~~~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~-~~f~~~~~~gl~p~s~i~v~ags~l~~l~ 238 (275)
T KOG3140|consen 160 KLFPDKIAFLQQDVELNRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPL-RIFFIGTFKGLIPYSFIEVRAGSTLASLT 238 (275)
T ss_pred HHhHHHHHHHHHHHHhcccchhhhhhhhhhccCCHHHHHHHHHHhhccch-HHHHHHHHHhcCchHHHHhhccchHhhhc
Confidence 44433322222222234444 788999999998 9999999999999999 99999999999999999999999998876
Q ss_pred hhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025076 194 ASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYST 229 (258)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~gli~~~~l~~~~kr~~~ 229 (258)
+..+..+... ........++-+++...+|+..
T Consensus 239 s~~~~~~~~~----~~~l~~~~~~~l~~~~l~kk~~ 270 (275)
T KOG3140|consen 239 SASDAFSWSS----ILTLLELALLSLLPTLLKKKRK 270 (275)
T ss_pred ccccccCCcc----hHHHHHHHHHHHhHHHHhhhhh
Confidence 5544322221 1222222333445555555543
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.56 E-value=1.4e-13 Score=113.03 Aligned_cols=145 Identities=18% Similarity=0.262 Sum_probs=116.7
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHhhccCChHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhhh
Q 025076 38 AIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLL--FGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAM 115 (258)
Q Consensus 38 ~l~~~~~~~g~~~~~i~~~l~~~~~~~~iP~~~~l~~~aG~l--fG~~~g~~~~~~g~~lGa~i~y~igR~~g~~~i~~~ 115 (258)
.+....+++++++ +|+..|+..+++|+|.|+++ ++... ..++.-..++++|+++|+.++|++||+..+...+
T Consensus 9 ~~~~~~~~~a~~~--Lf~vaF~eat~lP~~sE~~l--~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~-- 82 (161)
T COG1238 9 TLSLMSQAYAYAG--LFIVAFLEATLLPVPSEVLL--APMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR-- 82 (161)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhcCCChHHHH--HHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH--
Confidence 3444445566665 57888999999999999842 23333 4678888999999999999999999998876544
Q ss_pred hhhc-cchHHHHHHH-HhhhhhhhHhHhhhccccchhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHHHHH
Q 025076 116 EWAQ-RNKYFHILSR-GVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAG 190 (258)
Q Consensus 116 ~~~~-~~~~l~~~~~-~~~k~g~~~v~l~Rl~PiP~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~~l~ 190 (258)
++.. ++++.++.++ +.+|+|.+.+++.=+.|+| ++++.+||..++|+ .+|++..++|....-++..++....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp~ig-d~~t~~aG~~~~~~-~~f~~~~~igk~~Ry~~la~~~~~~~ 157 (161)
T COG1238 83 RWFPGSEEALEKLQEKWYRRYGVWTLLLSWLPPIG-DVLTLLAGWLRLNF-LPFILLVFLGKAARYLLLAALTLLGG 157 (161)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHccH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3332 3567777776 8899999999999999999 99999999999999 99999999999998887777666443
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=97.10 E-value=0.0075 Score=47.42 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=69.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhhhhhhcc-----chHHHHHHHHhhhhhhhHhHhhhccccc---hhh
Q 025076 80 FGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQR-----NKYFHILSRGVEKDGWKFVVLARFSPMP---SYV 151 (258)
Q Consensus 80 fG~~~g~~~~~~g~~lGa~i~y~igR~~g~~~i~~~~~~~~-----~~~l~~~~~~~~k~g~~~v~l~Rl~PiP---~~l 151 (258)
++++..++++.+|+++.....++.-++.-+. .++.++.++ .++.++-++..+|+|+..+++.=.+|+| -+.
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~-l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~lFVaIPlP~TG~wt 92 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKW-LKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWGLALFVAIPLPGTGAWT 92 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHH
Confidence 3577888999999998887776666555332 211122211 1345556777899999998888888887 456
Q ss_pred HHHhhhhccccccchhHHHHHHhHHHHH
Q 025076 152 INYALAATNVGFVVDFLLPTIIGCLPMI 179 (258)
Q Consensus 152 ~n~~aG~~~~~~~~~f~~~t~iG~ip~~ 179 (258)
-+.++-+.+++. ++=+++..+|.+...
T Consensus 93 gal~a~llg~~~-~~~~~ai~~Gv~ia~ 119 (121)
T PF06695_consen 93 GALIASLLGMDK-KKAFLAIFLGVLIAG 119 (121)
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHHHHH
Confidence 677788999999 999999888877654
No 8
>PRK01844 hypothetical protein; Provisional
Probab=86.65 E-value=1.3 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChhhhh
Q 025076 82 FFPAVLCVFSAKLLGASLSFWIGRLVFKSSNS 113 (258)
Q Consensus 82 ~~~g~~~~~~g~~lGa~i~y~igR~~g~~~i~ 113 (258)
.|..+++.+++..+|...+|+++|+..++.++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888899999999999998776443
No 9
>PRK11281 hypothetical protein; Provisional
Probab=83.48 E-value=70 Score=34.47 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=16.6
Q ss_pred hhHHHHHHhHHHHHHH-HHHHHHHHHHH
Q 025076 166 DFLLPTIIGCLPMILQ-NTSIGSLAGAA 192 (258)
Q Consensus 166 ~f~~~t~iG~ip~~~i-~~~~G~~l~~~ 192 (258)
++++.+++-..|-.++ .+..||..+..
T Consensus 685 ~~~~~~~l~~~P~~l~~l~~~GY~yTa~ 712 (1113)
T PRK11281 685 RLVVRTVLTIAPIALIVLVVLGYYYTAL 712 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666675544 66778877654
No 10
>PRK00523 hypothetical protein; Provisional
Probab=81.59 E-value=2.8 Score=29.74 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhhh
Q 025076 85 AVLCVFSAKLLGASLSFWIGRLVFKSSNS 113 (258)
Q Consensus 85 g~~~~~~g~~lGa~i~y~igR~~g~~~i~ 113 (258)
.+++.+++..+|...+|+++|+..++-++
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888999999999998776443
No 11
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=76.59 E-value=6.7 Score=28.52 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=16.8
Q ss_pred CCCCchhhHHHHHHHHHHcCch
Q 025076 28 FGFDKDTGIKAIREWSDRLGVW 49 (258)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~g~~ 49 (258)
++...+...+.+.+++++.|+-
T Consensus 29 ~~~~k~~~~k~i~~yL~e~gy~ 50 (85)
T PF11337_consen 29 NPYQKHKAEKAIDWYLQEQGYK 50 (85)
T ss_pred chhhHHHHHHHHHHHHHHcCCc
Confidence 4556677888899999888864
No 12
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=76.29 E-value=11 Score=29.33 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=32.2
Q ss_pred HHHHHHHHcCchHHHHHHHHHHHHhhccCChHHH-HHHHHHHHHh--HHHHHHHHHHHHHHHHH
Q 025076 38 AIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVF-FEAAASLLFG--FFPAVLCVFSAKLLGAS 98 (258)
Q Consensus 38 ~l~~~~~~~g~~~~~i~~~l~~~~~~~~iP~~~~-l~~~aG~lfG--~~~g~~~~~~g~~lGa~ 98 (258)
.-+++++++|.+++.+|+. .|+|++-. ...+.+.++| ....+....+|..+++.
T Consensus 64 ~~~~~i~kyg~~GL~lFVa-------IPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 64 KKSKKIEKYGFWGLALFVA-------IPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHHHhHHHHHHHHh-------CCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3556777888888654432 36775432 3444566666 45566666777666554
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.15 E-value=7.7 Score=29.10 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=11.0
Q ss_pred hhhhcCCCCccccccCCC
Q 025076 231 ITVAESPSDIVADSSHGK 248 (258)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~ 248 (258)
.+..++++++|+|..++.
T Consensus 30 ~~~~~~~~~~v~~~~~~g 47 (95)
T PF07172_consen 30 ETEKEEEENEVQDDKYGG 47 (95)
T ss_pred hccccccCCCCCccccCC
Confidence 344555667788876544
No 14
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.09 E-value=3.6 Score=28.99 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhh
Q 025076 83 FPAVLCVFSAKLLGASLSFWIGRLVFKSSN 112 (258)
Q Consensus 83 ~~g~~~~~~g~~lGa~i~y~igR~~g~~~i 112 (258)
|.+++...++-..|...+|+++|+...+.+
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~k~l 33 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMKKQL 33 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777788888999998866533
No 15
>PRK11677 hypothetical protein; Provisional
Probab=75.89 E-value=6.1 Score=31.58 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChh
Q 025076 86 VLCVFSAKLLGASLSFWIGRLVFKS 110 (258)
Q Consensus 86 ~~~~~~g~~lGa~i~y~igR~~g~~ 110 (258)
++++++|-++|.+++|+++|+..+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 4677788899999999999986544
No 16
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=75.65 E-value=3.9 Score=35.89 Aligned_cols=17 Identities=29% Similarity=0.340 Sum_probs=11.1
Q ss_pred chhHHHHHHhHHHHHHH
Q 025076 165 VDFLLPTIIGCLPMILQ 181 (258)
Q Consensus 165 ~~f~~~t~iG~ip~~~i 181 (258)
.+|+.-..+|.+.+.++
T Consensus 9 ~~~~~~illg~~iGg~~ 25 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFI 25 (248)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777776666554
No 17
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=73.47 E-value=3.5 Score=28.65 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhChhhh
Q 025076 88 CVFSAKLLGASLSFWIGRLVFKSSN 112 (258)
Q Consensus 88 ~~~~g~~lGa~i~y~igR~~g~~~i 112 (258)
+..++..+|..++|+++|+..++-+
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l 26 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQL 26 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999877644
No 18
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=72.32 E-value=68 Score=28.83 Aligned_cols=141 Identities=16% Similarity=0.071 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHcCchHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHhChhh
Q 025076 34 TGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLP-YAVFFEAAASLLFGFFPAVLCVFSAKLL-GASLSFWIGRLVFKSS 111 (258)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~~i~~~l~~~~~~~~iP-~~~~l~~~aG~lfG~~~g~~~~~~g~~l-Ga~i~y~igR~~g~~~ 111 (258)
+..+....+.+..+.+......+.+........| ... +.+..++......+..+....++. .+....++++|.+...
T Consensus 31 ~~~~~~~~~~~~l~if~~~~~~l~~i~~s~~~~~~~~~-l~lp~~i~~~~~L~~vl~~y~~~~~a~~~~~~~~~y~f~qt 109 (275)
T KOG3140|consen 31 ELLLSLMSIAERLGIFLSFSLVLVYIYLSAPALSELGV-LKLPRDILDLRGLGAVLRKYKATYFAAVLLGFIAAYVFLQT 109 (275)
T ss_pred hhhhhhccHHHHHHHhhHHHHHHHHHHHcccCcccccc-ccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3344444555666666666666666666555554 433 344444444444455444444443 3444555566655432
Q ss_pred hhhhhhhccchHHHHHHHHhhhhhhhHhHhhhccccchhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHH
Q 025076 112 NSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGS 187 (258)
Q Consensus 112 i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~PiP~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~ 187 (258)
.......+..+.......+++.+++.|++|.+-...||....+-.+. + ..-.+|+...+.....
T Consensus 110 -----faipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~-~------v~~l~p~~~~~~~~~~ 173 (275)
T KOG3140|consen 110 -----FAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRP-L------VLKLFPDKIAFLQQDV 173 (275)
T ss_pred -----cccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHH-H------HHHHhHHHHHHHHHHH
Confidence 21222445555566677779999999999986677888877544333 1 2233555555554443
No 19
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=71.61 E-value=67 Score=27.81 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCCchhhHHHHHHHHHHcCchH-HHHHHHHHHHHhhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025076 29 GFDKDTGIKAIREWSDRLGVWA-IPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLV 107 (258)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~g~~~-~~i~~~l~~~~~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~~ 107 (258)
..+.+.-.+++++.-. .++.. .++..+.-.+...+..+-+..-..+-|-..|.+...+-+++|+++.-.++=..+|..
T Consensus 32 ~~~~~~l~~~i~~~g~-~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~ 110 (223)
T COG0398 32 LLDPETLREWIQAYGA-LGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDW 110 (223)
T ss_pred ccCHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455566666666554 44443 666566655554444454454455678889999999999999999999998888876
Q ss_pred Chhhhh
Q 025076 108 FKSSNS 113 (258)
Q Consensus 108 g~~~i~ 113 (258)
.++.++
T Consensus 111 ~~~~~~ 116 (223)
T COG0398 111 VLKFVG 116 (223)
T ss_pred HHHHhc
Confidence 665544
No 20
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=64.51 E-value=78 Score=25.87 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=46.7
Q ss_pred HHHHcCchHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHhChhhhhhhhhhcc
Q 025076 42 WSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLL-GASLSFWIGRLVFKSSNSAMEWAQR 120 (258)
Q Consensus 42 ~~~~~g~~~~~i~~~l~~~~~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~l-Ga~i~y~igR~~g~~~i~~~~~~~~ 120 (258)
+++++++...==|.=.+.+....|=|..+=+....|+..+-+.|.+.+++|..+ +..+...+++.+.+ .++
T Consensus 31 ~V~~~~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~--------~~~ 102 (169)
T PF02417_consen 31 FVERRGWLTEEEFLEGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSR--------FRE 102 (169)
T ss_pred HhHccCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hcc
Confidence 344556655444555556666666665431344567766667788888888776 44555666665422 234
Q ss_pred chHHHHHHHH
Q 025076 121 NKYFHILSRG 130 (258)
Q Consensus 121 ~~~l~~~~~~ 130 (258)
++.++++.+.
T Consensus 103 ~~~v~~~l~g 112 (169)
T PF02417_consen 103 NPWVQAFLKG 112 (169)
T ss_pred cHHHHHHHHH
Confidence 5555555443
No 21
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=63.88 E-value=36 Score=25.59 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhhccCChHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHH
Q 025076 37 KAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLL-FGFFPAVLCVFSAKLLGASLSFWIG 104 (258)
Q Consensus 37 ~~l~~~~~~~g~~~~~i~~~l~~~~~~~~iP~~~~l~~~aG~l-fG~~~g~~~~~~g~~lGa~i~y~ig 104 (258)
++.+++++++|.+..+ +....+.+|.++ ++.++|.. ..++.-+..+.+|...-+.+.-++|
T Consensus 60 ~~~~~~~~~~g~~~l~------~~~~~P~~P~~~-~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G 121 (123)
T PF09335_consen 60 ERIERWFQKYGFWVLF------LSRFIPGLPFDV-VNYLAGITRMPFRRFFLASLIGKLPWTILYVLLG 121 (123)
T ss_pred HHHHHHHhhhhHHHHH------HHHHHHHccHHH-HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477777777766532 122334578876 57777775 4455555566666666555544444
No 22
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=62.54 E-value=35 Score=28.95 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=35.6
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 025076 165 VDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTDITVA 234 (258)
Q Consensus 165 ~~f~~~t~iG~ip~~~i~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~gli~~~~l~~~~kr~~~~~~~~ 234 (258)
+++++++...++.|.+++..-+.. ...-++. .. -..+.++|. +.+.+-+++||+.+-.+..
T Consensus 162 ~K~~lv~~~sm~lWi~v~i~t~~l-----PtslN~~-L~--pi~l~IiGa-v~lalRfylkkk~NIqsa~ 222 (226)
T COG4858 162 WKYLLVAVLSMLLWIAVMIATVFL-----PTSLNPQ-LP--PIALTIIGA-VILALRFYLKKKKNIQSAL 222 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-----CCcCCcC-Cc--hHHHHHHHH-HHHHHHHHHHHhhcccccc
Confidence 788888888999999887443321 1101111 11 134445553 4556778888887765543
No 23
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=62.06 E-value=27 Score=29.39 Aligned_cols=37 Identities=16% Similarity=0.411 Sum_probs=28.4
Q ss_pred cccchhhHHHhhhhccccccchhHHHHHHhHHHHHHHH
Q 025076 145 SPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQN 182 (258)
Q Consensus 145 ~PiP~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~ 182 (258)
+|.|.++...+....++.+ ..|..-..+|.++...+.
T Consensus 1 ~~~~~~~~~~a~~lr~~Gw-i~FW~QlvLgvVs~~iL~ 37 (183)
T PF12263_consen 1 MSVPPALQRIARALRRLGW-IGFWIQLVLGVVSAVILL 37 (183)
T ss_pred CCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888 899999999988855443
No 24
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=62.05 E-value=18 Score=23.52 Aligned_cols=23 Identities=4% Similarity=-0.070 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhhhhhcCCCCcc
Q 025076 219 LISFRIKKYSTDITVAESPSDIV 241 (258)
Q Consensus 219 ~l~~~~kr~~~~~~~~~~~~~~~ 241 (258)
-+..+||||+.++-.||++..|-
T Consensus 10 tlamlwrrrfanrvqpeps~vdg 32 (54)
T PF15201_consen 10 TLAMLWRRRFANRVQPEPSGVDG 32 (54)
T ss_pred HHHHHHHHHHhccCCCCCCCCCc
Confidence 34568899999988888866553
No 25
>COG2426 Predicted membrane protein [Function unknown]
Probab=61.68 E-value=69 Score=25.45 Aligned_cols=56 Identities=14% Similarity=-0.030 Sum_probs=35.1
Q ss_pred HHHHHHhhhhhhhHhHhhhccccchhhH---HHhhhhccccccchhHHHHHHhHHHHHHH
Q 025076 125 HILSRGVEKDGWKFVVLARFSPMPSYVI---NYALAATNVGFVVDFLLPTIIGCLPMILQ 181 (258)
Q Consensus 125 ~~~~~~~~k~g~~~v~l~Rl~PiP~~l~---n~~aG~~~~~~~~~f~~~t~iG~ip~~~i 181 (258)
+|.+...||+|+.-+.+.=-+|.|-+-+ ..+|-...++. +.-+.+-.+|......+
T Consensus 73 rka~~yVER~G~iGL~iFvAIPLP~TG~wtgaLaA~llgI~~-r~a~~al~~Gg~is~~v 131 (142)
T COG2426 73 RKAKGYVERYGFIGLIIFVAIPLPGTGAWTGALAAYLLGIRE-RFAFAALSAGGLISGAV 131 (142)
T ss_pred HhccCcHhhhhhhhhhheeeccCCCccHhHHHHHHHHHcCch-HHHHHHHHHhhHHHHHH
Confidence 4455668999998888888888875422 34455667777 55444444554444333
No 26
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=59.45 E-value=1.8e+02 Score=28.52 Aligned_cols=65 Identities=15% Similarity=0.021 Sum_probs=35.9
Q ss_pred CchhhHHHHHHHHHH----cCchHHHH-HHH-HHHHH-hhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 025076 31 DKDTGIKAIREWSDR----LGVWAIPV-FVG-FHTLT-IALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLL 95 (258)
Q Consensus 31 ~~~~~~~~l~~~~~~----~g~~~~~i-~~~-l~~~~-~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~l 95 (258)
......|.+++++.+ +.....++ |.. .|.+. ..+.-|..+.-.+.-|.=|.+..+..++.++++.
T Consensus 82 ~~sG~f~~Ir~~i~~It~DrRiQ~llIg~~FgaflEGAaGFGtP~AI~ApLLVgLGF~PL~AA~l~LIaNta 153 (522)
T COG1620 82 VKSGAFDIIRKSLANITPDRRIQLLLIGFCFGAFLEGAAGFGTPAAIAAPLLVGLGFNPLKAAGLCLIANTA 153 (522)
T ss_pred HHcCCHHHHHHHHhccCCcchhhhhhHHHHHHHHHhhhcccCChHHHHHHHHHHcCCChHHHHHHHHHhcCC
Confidence 344556777777754 34433322 222 23333 5566777654344445557777777777777654
No 27
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=59.34 E-value=1.4e+02 Score=26.97 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=29.1
Q ss_pred hhHhHhhhcccc-chhhHHHhhhhccccccchhHHHHHHhHHHH
Q 025076 136 WKFVVLARFSPM-PSYVINYALAATNVGFVVDFLLPTIIGCLPM 178 (258)
Q Consensus 136 ~~~v~l~Rl~Pi-P~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~ 178 (258)
....+++=..|+ +...++.+.++.+-+- ..-..-+++-.-|.
T Consensus 53 ~~a~~~G~~~p~C~c~~~P~~~~l~~~Ga-~~~~~~aFl~a~p~ 95 (307)
T PF03773_consen 53 LLASLLGALLPVCSCGAVPVARGLLRKGA-PLGAAMAFLLASPL 95 (307)
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHCCC-CcchhHHHHHhhHH
Confidence 445678888998 8899999999887666 55444455444443
No 28
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=59.21 E-value=20 Score=29.56 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 025076 67 PYAVFFEAAASLLFGFFPAVLCVFSAKLLGASL 99 (258)
Q Consensus 67 P~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i 99 (258)
|.+-+.++.+|+++||++|.....+++.++...
T Consensus 32 ~~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~ 64 (160)
T TIGR02359 32 PVQHFVNVIAGVLLGPWYALAVAFIIGLLRNTL 64 (160)
T ss_pred ChhHHHHHHHHHHHchHHHHHHHHHHHHHHHHh
Confidence 434446888999999999999888888877664
No 29
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=58.86 E-value=86 Score=24.53 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=7.0
Q ss_pred HHHHHHHhhhhh
Q 025076 124 FHILSRGVEKDG 135 (258)
Q Consensus 124 l~~~~~~~~k~g 135 (258)
.++++..++++|
T Consensus 86 ~r~l~~~l~~~g 97 (121)
T PF11990_consen 86 YRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHhc
Confidence 455666666654
No 30
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=58.44 E-value=86 Score=31.02 Aligned_cols=67 Identities=24% Similarity=0.183 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhChhhhhhhhhhccchHHHHHHHHhhhhhhhHhHhhhccccchhhHHHhhh-hccccccchhHHHHHHhH
Q 025076 97 ASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPMPSYVINYALA-ATNVGFVVDFLLPTIIGC 175 (258)
Q Consensus 97 a~i~y~igR~~g~~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~PiP~~l~n~~aG-~~~~~~~~~f~~~t~iG~ 175 (258)
+...|.+|...|+.+.+ -++|+|++..+++=.+-+--.++.+.++ +.+++. ....+.+.|.
T Consensus 65 ~lFvy~vG~~~Gp~Ff~----------------~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~--~~~~Gl~aGa 126 (562)
T TIGR03802 65 ALFIFAIGYEVGPQFFA----------------SLKKDGLREIILALVFAVSGLITVYALAKIFGLDK--GTAAGLAAGG 126 (562)
T ss_pred HHHHHHhhhccCHHHHH----------------HHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHhch
Confidence 67789999998887654 1334455554444433332233444444 345554 4455555555
Q ss_pred HHHHHH
Q 025076 176 LPMILQ 181 (258)
Q Consensus 176 ip~~~i 181 (258)
.-.+..
T Consensus 127 lT~tp~ 132 (562)
T TIGR03802 127 LTQSAV 132 (562)
T ss_pred hhccHH
Confidence 444433
No 31
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=58.26 E-value=90 Score=28.69 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhChhhhhhhhhhccchHHHHHHHHhhhhhhhHhHhhhccc----c-chhhHHHhhhhcccccc
Q 025076 90 FSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSP----M-PSYVINYALAATNVGFV 164 (258)
Q Consensus 90 ~~g~~lGa~i~y~igR~~g~~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~P----i-P~~l~n~~aG~~~~~~~ 164 (258)
.+.+.+||.+.|+++-++++...+ .+++++++++|-....+++ +-+. . -..+++......++|+
T Consensus 41 ~v~~ligai~~~li~~~~~~~~~~---------~~~~le~~i~k~~~~~ilf-~tiGLiiGLlia~l~~~pL~~~~ip~- 109 (356)
T COG4956 41 YVDALIGAIIFFLISFWFGKYVLN---------WLKRLEEQIRKLPVTTILF-GTIGLIIGLLIAVLLSSPLFLLPIPF- 109 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHhhHHhhCCccH-
Confidence 344677777777777776654332 2444555555554433322 2222 1 1222222223334444
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHH
Q 025076 165 VDFLLPTIIGCLPMILQNTSIGSLAGA 191 (258)
Q Consensus 165 ~~f~~~t~iG~ip~~~i~~~~G~~l~~ 191 (258)
.. +++. +..+++.+|+|..++.
T Consensus 110 ~~----~ii~-vi~t~il~y~G~~~~~ 131 (356)
T COG4956 110 IS----TIIP-VILTIILAYFGFQLAD 131 (356)
T ss_pred HH----hHHH-HHHHHHHHHHhhHHhh
Confidence 22 2222 3346667888887663
No 32
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=58.01 E-value=17 Score=29.49 Aligned_cols=32 Identities=28% Similarity=0.159 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 025076 68 YAVFFEAAASLLFGFFPAVLCVFSAKLLGASLS 100 (258)
Q Consensus 68 ~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~ 100 (258)
+++ ....+|.+||+..|.+...+|..+++.+.
T Consensus 38 ~~~-~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 38 GSI-PIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhH-HHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 444 46778999999999999999988888754
No 33
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=57.47 E-value=1.1e+02 Score=28.65 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=40.8
Q ss_pred HHHcCchHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 025076 43 SDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGA-SLSFWIGRLV 107 (258)
Q Consensus 43 ~~~~g~~~~~i~~~l~~~~~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa-~i~y~igR~~ 107 (258)
++++++..-==|.-.+.+.+..|=|... +....|+..+-+.|.+++++|..+=+ .+.+.+++.+
T Consensus 233 V~~~~Wlt~~eF~~~~alaq~~PGP~~~-~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~~~ 297 (368)
T TIGR00937 233 VDRGNWLTAGQFLDGIALAQITPGPLFI-TATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLPYF 297 (368)
T ss_pred HhccCCCCHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433345555666767777655 45667777777889999999888755 4445565554
No 34
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=55.58 E-value=19 Score=28.33 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhChh
Q 025076 89 VFSAKLLGASLSFWIGRLVFKS 110 (258)
Q Consensus 89 ~~~g~~lGa~i~y~igR~~g~~ 110 (258)
+++|.++|.+++|+++|...+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5678888999999999987665
No 35
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=51.64 E-value=25 Score=22.70 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=5.9
Q ss_pred hhhhhcCCCCcccc
Q 025076 230 DITVAESPSDIVAD 243 (258)
Q Consensus 230 ~~~~~~~~~~~~~~ 243 (258)
++.-++...-|-+|
T Consensus 35 k~~~e~aa~lpl~d 48 (49)
T PF05545_consen 35 KKRFEEAANLPLDD 48 (49)
T ss_pred hhhHHHHHccCccC
Confidence 33334444444444
No 36
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=51.32 E-value=48 Score=28.40 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChhhhhhhhhhccchHHHH
Q 025076 86 VLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHI 126 (258)
Q Consensus 86 ~~~~~~g~~lGa~i~y~igR~~g~~~i~~~~~~~~~~~l~~ 126 (258)
.....+....|+..+|..||++||. .. +....+|.+|-
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~-~~--~~~sp~KT~EG 169 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKH-LA--PKISPKKTWEG 169 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-cC--CCCCCCCCHHH
Confidence 4556677778999999999999997 22 33444454543
No 37
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=50.29 E-value=27 Score=28.33 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=3.0
Q ss_pred CCCCCccc
Q 025076 247 GKTGREGL 254 (258)
Q Consensus 247 ~~~~~~~~ 254 (258)
|.--|-|+
T Consensus 75 qDqqw~~v 82 (189)
T PF05568_consen 75 QDQQWAGV 82 (189)
T ss_pred cchhhccC
Confidence 33334443
No 38
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=49.73 E-value=41 Score=28.56 Aligned_cols=60 Identities=10% Similarity=0.201 Sum_probs=32.8
Q ss_pred ccccchhHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025076 161 VGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTD 230 (258)
Q Consensus 161 ~~~~~~f~~~t~iG~ip~~~i~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~gli~~~~l~~~~kr~~~~ 230 (258)
.++ +++++..++..+.|..+++.... +.... ++.- ..|...++|+ +...+.+++|||.+-
T Consensus 144 ~~~-~k~~~~~~~~~~~w~~~~~~~~~-lp~~i----np~l---~~~~~iiig~-i~~~~~~~lkkk~~i 203 (206)
T PF06570_consen 144 PSW-WKYILISVLAMVLWIVIFVLTSF-LPPVI----NPVL---PPWVYIIIGV-IAFALRFYLKKKYNI 203 (206)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHH-ccccC----CcCC---CHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 344 56666666777777776665433 22211 1111 1255556664 445566888888763
No 39
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.85 E-value=26 Score=27.54 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH-HHHHHHhhh
Q 025076 211 LLGIVSSILIS-FRIKKYSTD 230 (258)
Q Consensus 211 ~~gli~~~~l~-~~~kr~~~~ 230 (258)
+.|+++.+++. |++||+.|+
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 34444444443 444444333
No 40
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=48.84 E-value=1.6e+02 Score=24.90 Aligned_cols=59 Identities=24% Similarity=0.147 Sum_probs=30.3
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025076 165 VDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKY 227 (258)
Q Consensus 165 ~~f~~~t~iG~ip~~~i~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~gli~~~~l~~~~kr~ 227 (258)
.-|..+.+++.....++.........+. .....+....++-.++|++.+.+..+.++|+
T Consensus 32 ~af~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 32 LAFLAGWFLGYLAVGLVLLFGLDALPSG----SSSAPSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc----cccCCccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566666666665555444444433321 1111223345666677766665555566555
No 41
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.39 E-value=1.3e+02 Score=23.31 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=7.4
Q ss_pred HHHHHHHhhhhh
Q 025076 124 FHILSRGVEKDG 135 (258)
Q Consensus 124 l~~~~~~~~k~g 135 (258)
+++++...++++
T Consensus 83 ~r~l~~~~~~~~ 94 (111)
T TIGR03750 83 YRKLEWKLARLG 94 (111)
T ss_pred HHHHHHHHHHcC
Confidence 556666666665
No 42
>COG4852 Predicted membrane protein [Function unknown]
Probab=48.36 E-value=1.3e+02 Score=23.49 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHcCchHHHHHHHHHHHHhhc--cCCh----HHHHHHHHHHHHhH
Q 025076 35 GIKAIREWSDRLGVWAIPVFVGFHTLTIAL--CLPY----AVFFEAAASLLFGF 82 (258)
Q Consensus 35 ~~~~l~~~~~~~g~~~~~i~~~l~~~~~~~--~iP~----~~~l~~~aG~lfG~ 82 (258)
.+..+-+.+.+....-..+|-++|.....+ ..|+ +....+.+|.++|+
T Consensus 30 Yq~~iGdlm~Dfr~~PAiiFYlIYv~gltff~l~P~~~kgs~t~alL~GAl~G~ 83 (134)
T COG4852 30 YQPYIGDLMGDFRLAPAIIFYLIYVVGLTFFVLSPGLEKGSWTYALLNGALYGL 83 (134)
T ss_pred hhHHHhhhhhhcccchHHHHHHHHHhhhheeEeccccccCccHHHHHhhhHhhh
Confidence 455666666666665555666777754322 2453 33456778888774
No 43
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=48.32 E-value=78 Score=29.75 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 025076 211 LLGIVSSILISFRIKKYSTDI 231 (258)
Q Consensus 211 ~~gli~~~~l~~~~kr~~~~~ 231 (258)
+.+++..+...++++|+.+++
T Consensus 148 i~~i~~~~~~~~~~~k~~~kr 168 (388)
T TIGR00771 148 IGAIILTAIAHFFKQRGEDKK 168 (388)
T ss_pred HHHHHHHHHHHHHHhcccchh
Confidence 344444455556666655444
No 44
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=47.82 E-value=21 Score=32.08 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChhhhhhhhhhccchHHH
Q 025076 87 LCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFH 125 (258)
Q Consensus 87 ~~~~~g~~lGa~i~y~igR~~g~~~i~~~~~~~~~~~l~ 125 (258)
+...+....+++.+|+.||.+||+.+- +.+..+|..|
T Consensus 155 l~l~~~vw~sDt~AYf~Gr~fGk~KL~--P~ISPkKTwE 191 (285)
T PRK11624 155 LYVMILVWGADSGAYMFGKLFGKHKLA--PKVSPGKTWE 191 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC--CcCCCCCchh
Confidence 444455667899999999999997553 3444445444
No 45
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=47.74 E-value=42 Score=25.61 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 025076 3 MGKWLKIGMVVGVIAIIREVSKHY 26 (258)
Q Consensus 3 m~~~~~~~~i~~li~~~~~~~~~~ 26 (258)
|++|..+.+.+++++.++.+|..+
T Consensus 1 ~~~~~~~~l~~lvl~L~~~l~~qs 24 (110)
T PF10828_consen 1 MKKYIYIALAVLVLGLGGWLWYQS 24 (110)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999988777777777766555
No 46
>PRK13661 hypothetical protein; Provisional
Probab=47.67 E-value=36 Score=28.60 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 025076 68 YAVFFEAAASLLFGFFPAVLCVFSAKLLGASLS 100 (258)
Q Consensus 68 ~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~ 100 (258)
++. .....+.+||+..|.+...+|..+++.+.
T Consensus 40 ~~~-~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 40 AYA-FLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred HHH-HHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 454 35668899999999999888888888763
No 47
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.16 E-value=22 Score=24.36 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025076 207 YLFPLLGIVSSILISFRIKKY 227 (258)
Q Consensus 207 ~~~~~~gli~~~~l~~~~kr~ 227 (258)
+....+.++.+.++++..++.
T Consensus 13 ~~t~~~~l~fiavi~~ayr~~ 33 (60)
T COG4736 13 WGTIAFTLFFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 444444444444444444433
No 48
>COG1238 Predicted membrane protein [Function unknown]
Probab=46.91 E-value=85 Score=25.86 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=50.8
Q ss_pred HHhhhhhhhHhHhhh-----ccccchhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 025076 129 RGVEKDGWKFVVLAR-----FSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAVAS 195 (258)
Q Consensus 129 ~~~~k~g~~~v~l~R-----l~PiP~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~~l~~~~~~ 195 (258)
...++++...+++.- +.|+|..++-...-..+.+. +.+...+++|+..+.++--++|+.+.+..+.
T Consensus 12 ~~~~~~a~~~Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~-~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 12 LMSQAYAYAGLFIVAFLEATLLPVPSEVLLAPMLLLGLNA-WILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHcCCch-HHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 334566665555544 45788887777666777899 8999999999999999999999998887765
No 49
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=45.57 E-value=50 Score=21.44 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=14.1
Q ss_pred hhcCCCCccccccCCCCCCc
Q 025076 233 VAESPSDIVADSSHGKTGRE 252 (258)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (258)
..++...--.|++|||-|-|
T Consensus 30 ~s~~kssf~sd~skg~l~p~ 49 (50)
T PRK14094 30 QDGEKSSFYSDSSKGKLGPK 49 (50)
T ss_pred cccCccceeccccCCCCCCC
Confidence 34444566789999998865
No 50
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=45.24 E-value=25 Score=31.08 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChhhh
Q 025076 86 VLCVFSAKLLGASLSFWIGRLVFKSSN 112 (258)
Q Consensus 86 ~~~~~~g~~lGa~i~y~igR~~g~~~i 112 (258)
.++..++...+++.+|+.||.+|++..
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~kl 162 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHKL 162 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCCC
Confidence 445667888899999999999999843
No 51
>COG2426 Predicted membrane protein [Function unknown]
Probab=44.98 E-value=58 Score=25.90 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhhccCChHHHH-HHHHHHHHhH--HHHHHHHHHHHHHHH
Q 025076 36 IKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVFF-EAAASLLFGF--FPAVLCVFSAKLLGA 97 (258)
Q Consensus 36 ~~~l~~~~~~~g~~~~~i~~~l~~~~~~~~iP~~~~l-~~~aG~lfG~--~~g~~~~~~g~~lGa 97 (258)
.+.-..+++++|+.+..+|+ ..|+|++-.- ...+.+++|. -..+....+|..++.
T Consensus 72 ~rka~~yVER~G~iGL~iFv-------AIPLP~TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~ 129 (142)
T COG2426 72 RRKAKGYVERYGFIGLIIFV-------AIPLPGTGAWTGALAAYLLGIRERFAFAALSAGGLISG 129 (142)
T ss_pred HHhccCcHhhhhhhhhhhee-------eccCCCccHhHHHHHHHHHcCchHHHHHHHHHhhHHHH
Confidence 34445577788888865553 3477865432 2234555653 223333444444433
No 52
>PRK01637 hypothetical protein; Reviewed
Probab=44.26 E-value=1.9e+02 Score=25.73 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=31.2
Q ss_pred hhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHHHHHH
Q 025076 149 SYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGA 191 (258)
Q Consensus 149 ~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~~l~~ 191 (258)
+.++.+...-.++++ ++-+.++.++.+-|...-...+....+
T Consensus 187 f~~lY~~~P~~k~~~-r~~~~Ga~~a~~~w~~~~~~f~~Yv~~ 228 (286)
T PRK01637 187 FWLLYSVVPNKKVPF-RHALVGALVAALLFELGKKGFALYITT 228 (286)
T ss_pred HHHHHhhcCCCccch-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666678899 999999999888888776666666554
No 53
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=44.22 E-value=2e+02 Score=24.33 Aligned_cols=19 Identities=5% Similarity=0.205 Sum_probs=14.0
Q ss_pred hHHHHHHHHhhhhhhhHhH
Q 025076 122 KYFHILSRGVEKDGWKFVV 140 (258)
Q Consensus 122 ~~l~~~~~~~~k~g~~~v~ 140 (258)
+.++++++++++|+...+.
T Consensus 180 ~~l~r~~~wl~~~~~~i~~ 198 (214)
T PF11139_consen 180 PWLERLRSWLRRHSRQILA 198 (214)
T ss_pred HHHHHHHHHHHHccHHHHH
Confidence 5678888888888765543
No 54
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=43.68 E-value=2.5e+02 Score=26.23 Aligned_cols=67 Identities=15% Similarity=-0.029 Sum_probs=40.2
Q ss_pred HHHHHcCchHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 025076 41 EWSDRLGVWAIPVFVGFHTLTIALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLG-ASLSFWIGRLV 107 (258)
Q Consensus 41 ~~~~~~g~~~~~i~~~l~~~~~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lG-a~i~y~igR~~ 107 (258)
+.++++++..-==|.=.+.+.+..|=|..+-+....|+..+-+.|.+.+.+|.++= ..+.+.+++.+
T Consensus 22 ~~V~~~~Wlt~~ef~~~~alaq~~PGP~~~n~a~~iG~~~~G~~Gal~a~~~~~lP~~ili~~l~~~~ 89 (368)
T TIGR00937 22 ELVDERQWMSEASYNDLVALAQFLPGPASSQVAIYLGYLLGGIVGAILAGLAFTLPSFLLVVALAWAY 89 (368)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544334455556666666655434445677766678888888887774 45556666554
No 55
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=42.56 E-value=1.4e+02 Score=22.56 Aligned_cols=29 Identities=31% Similarity=0.245 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Q 025076 81 GFFPAVLCVFSAKLLGASLSFWIGRLVFK 109 (258)
Q Consensus 81 G~~~g~~~~~~g~~lGa~i~y~igR~~g~ 109 (258)
++|.++.+......+.+.++++.++.-.+
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~l~ 98 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRRLR 98 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777776667677777777665443
No 56
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=42.07 E-value=1.7e+02 Score=23.11 Aligned_cols=78 Identities=18% Similarity=0.108 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHc-CchHHHHHHHHHHHHh-hcc-CChH----HHHHHH
Q 025076 3 MGKWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRL-GVWAIPVFVGFHTLTI-ALC-LPYA----VFFEAA 75 (258)
Q Consensus 3 m~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~i~~~l~~~~~-~~~-iP~~----~~l~~~ 75 (258)
|++.++..+..+++. +.+-.-|.+ ......-.+++.+...+. ..+...+|=++|.... .+. .|.. ..-.+.
T Consensus 1 M~~~~~~yl~~~~vf-l~lD~iWL~-~va~~~Y~~~ig~ll~~~~~~~pA~~fYl~yv~gi~~F~~~P~l~~~s~~~a~~ 78 (128)
T PF09945_consen 1 MKKYLIAYLATLVVF-LVLDAIWLG-FVAKRFYRPHIGDLLADQPNLWPAIVFYLIYVAGIVYFAVRPALAAGSWLRALL 78 (128)
T ss_pred ChhHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHheeeeccccccCCHHHHHH
Confidence 777777764433332 233333331 011223455666666653 3444444445555432 222 3532 122345
Q ss_pred HHHHHhH
Q 025076 76 ASLLFGF 82 (258)
Q Consensus 76 aG~lfG~ 82 (258)
.|.++|+
T Consensus 79 ~GallGl 85 (128)
T PF09945_consen 79 YGALLGL 85 (128)
T ss_pred HHHHHHH
Confidence 6776653
No 57
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=41.57 E-value=37 Score=27.63 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhHHH
Q 025076 71 FFEAAASLLFGFFP 84 (258)
Q Consensus 71 ~l~~~aG~lfG~~~ 84 (258)
.+++.+|.+.|||+
T Consensus 33 ~iNviaaVlLGP~y 46 (150)
T PF09512_consen 33 MINVIAAVLLGPWY 46 (150)
T ss_pred HHHHHHHHHhchHH
Confidence 34444444444443
No 58
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=40.22 E-value=50 Score=32.54 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH-HHHhcCCCCchhhHHHHHHHHHH
Q 025076 3 MGKWLKIGMVVGVIAIIREV-SKHYGFGFDKDTGIKAIREWSDR 45 (258)
Q Consensus 3 m~~~~~~~~i~~li~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 45 (258)
|||++|+++++++++++.++ ...+ ++.....+.+.+.+++
T Consensus 1 Mkk~lki~~~~l~~lvll~~~~~~~---~~~~~~k~~i~~~v~~ 41 (604)
T PF05170_consen 1 MKKLLKILLIILAVLVLLVVALPFL---LDPNDYKPQIEQQVSE 41 (604)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHH
Confidence 89999988766644433332 2222 3445556666666654
No 59
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=39.22 E-value=1.2e+02 Score=23.97 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHcCchH
Q 025076 5 KWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWA 50 (258)
Q Consensus 5 ~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 50 (258)
||.-++ .++.++++..+|+|+. |.+.....+.+.+.+|+...
T Consensus 29 RWRiiL-~v~svct~v~A~~wL~---Dp~ts~~~~~~sL~~H~~Ft 70 (125)
T PF09771_consen 29 RWRIIL-VVVSVCTAVGAWHWLM---DPETSQVSFLDSLWNHPFFT 70 (125)
T ss_pred hHHHHH-HHHHHHHHHHHHHHhc---CcccccchHHHHHHhCHhHH
Confidence 455444 5556666677788884 33444556666677777655
No 60
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=39.15 E-value=1.2e+02 Score=24.70 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=20.2
Q ss_pred ccccchhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHH
Q 025076 144 FSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGS 187 (258)
Q Consensus 144 l~PiP~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~ 187 (258)
+.|.|.++...-.|+.+= ++-.....+|......+++.+..
T Consensus 5 ~~PGP~~~~~i~~~~~~G---~~~~~~~~~G~~~~~~i~~~~~~ 45 (191)
T PF01810_consen 5 IPPGPVNLLVISNGLRKG---FKAGLPVALGAALGDLIYILLAV 45 (191)
T ss_pred ecCCHHHHHHHHHHHHhC---hhHHHHHHHHHHHHHHHHHHHHH
Confidence 456687777666665422 22333333444444444444433
No 61
>PRK03818 putative transporter; Validated
Probab=38.37 E-value=3.2e+02 Score=27.01 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhChhhhhhhhhhccchHHHHHHHHhhhhhhhHhHhhhcccc-chhhHHHhhh-hccccccchhHHHHHHh
Q 025076 97 ASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPM-PSYVINYALA-ATNVGFVVDFLLPTIIG 174 (258)
Q Consensus 97 a~i~y~igR~~g~~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~Pi-P~~l~n~~aG-~~~~~~~~~f~~~t~iG 174 (258)
+...|.+|-..|..+++ .++++|....+++=.+.+ |.-+ .+.+. +.+++. .-..+.+.|
T Consensus 68 ~lFv~~vGl~~Gp~f~~----------------~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~G~~aG 128 (552)
T PRK03818 68 ILFVYTIGIQVGPGFFS----------------SLRKSGLRLNLFAVLIVILGGLV-TAILHKLFGIPL--PVMLGIFSG 128 (552)
T ss_pred HHHHHHHhhcccHHHHH----------------HHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHhCCCH--HHHHHHhhc
Confidence 45566777766665432 245667777777666664 5433 33333 456776 355555566
Q ss_pred HHHHHHHH
Q 025076 175 CLPMILQN 182 (258)
Q Consensus 175 ~ip~~~i~ 182 (258)
..-.+...
T Consensus 129 a~T~tp~l 136 (552)
T PRK03818 129 AVTNTPAL 136 (552)
T ss_pred cccccHHH
Confidence 55544443
No 62
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=37.35 E-value=40 Score=27.16 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 025076 72 FEAAASLLFGFFPAVLCVFSAKLLGASL 99 (258)
Q Consensus 72 l~~~aG~lfG~~~g~~~~~~g~~lGa~i 99 (258)
..+.+|+++||+.|.+...+...++..+
T Consensus 34 ~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 34 PIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888899988887777765555443
No 63
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=37.07 E-value=1.6e+02 Score=23.92 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=16.4
Q ss_pred cccchhhHHHhhhhcc--ccccchhHHHHHHhHHHHH
Q 025076 145 SPMPSYVINYALAATN--VGFVVDFLLPTIIGCLPMI 179 (258)
Q Consensus 145 ~PiP~~l~n~~aG~~~--~~~~~~f~~~t~iG~ip~~ 179 (258)
+|.|.++...--|+.+ -+- ..+.++..+|...+.
T Consensus 1 tPGP~~~~~~~~~~~~G~~~~-~~~~~G~~~g~~~~~ 36 (185)
T TIGR00949 1 SPGPNFFVVMQTSLSSGRRAG-VLTILGIALGDAIWI 36 (185)
T ss_pred CCCcchHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHH
Confidence 4667666555555443 222 234444445544443
No 64
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=36.99 E-value=3.8e+02 Score=25.52 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhhhhhhHhHhhhcc
Q 025076 122 KYFHILSRGVEKDGWKFVVLARFS 145 (258)
Q Consensus 122 ~~l~~~~~~~~k~g~~~v~l~Rl~ 145 (258)
+.++...+..++.+|...++.-++
T Consensus 98 ~~i~avt~fm~~snFL~fyIA~LI 121 (438)
T COG3493 98 NVIKAVTNFMGKSNFLDFYIAALI 121 (438)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 457888999999999888776655
No 65
>COG4732 Predicted membrane protein [Function unknown]
Probab=36.59 E-value=45 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 025076 66 LPYAVFFEAAASLLFGFFPAVLCVFSAKLL 95 (258)
Q Consensus 66 iP~~~~l~~~aG~lfG~~~g~~~~~~g~~l 95 (258)
.|..-++++.+|...|||++...+.+.+.+
T Consensus 37 aP~qh~VNvlAgV~~GPwyala~A~~~sli 66 (177)
T COG4732 37 APMQHFVNVLAGVMMGPWYALAMALVTSLI 66 (177)
T ss_pred CcHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 576667889999999998877666554443
No 66
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=35.16 E-value=2e+02 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 025076 204 VWSYLFPLLGIVSSILISFRIK 225 (258)
Q Consensus 204 ~~~~~~~~~gli~~~~l~~~~k 225 (258)
.+...++++|+++...-.|.+-
T Consensus 75 ~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 75 SWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777776555554443
No 67
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=34.76 E-value=1.1e+02 Score=24.86 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChh
Q 025076 87 LCVFSAKLLGASLSFWIGRLVFKS 110 (258)
Q Consensus 87 ~~~~~g~~lGa~i~y~igR~~g~~ 110 (258)
.++++++.+|...+|++.|.+-|+
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999988664
No 68
>PF10063 DUF2301: Uncharacterized integral membrane protein (DUF2301); InterPro: IPR019275 This family contains uncharacterised integral membrane proteins.
Probab=34.22 E-value=2.3e+02 Score=22.67 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=27.8
Q ss_pred chhhHHHhhhhccccccchhHHHHHHhH--HHHHHHHHHHHHHHH
Q 025076 148 PSYVINYALAATNVGFVVDFLLPTIIGC--LPMILQNTSIGSLAG 190 (258)
Q Consensus 148 P~~l~n~~aG~~~~~~~~~f~~~t~iG~--ip~~~i~~~~G~~l~ 190 (258)
+..+=...++.+++-+ |.|+-..-.+. +|-.+-...+|+..+
T Consensus 50 ~l~vG~~FaaLtGi~f-KE~FCF~~~e~~~l~~llp~llLghl~g 93 (135)
T PF10063_consen 50 LLAVGPLFAALTGIAF-KEYFCFRRPEAKLLTFLLPLLLLGHLFG 93 (135)
T ss_pred HHHHHHHHHHHHhHHh-hchhhhhhHHHhhHHHHHHHHHHHHHHC
Confidence 3445556788999999 99998877655 333444455666544
No 69
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=32.96 E-value=1.5e+02 Score=23.13 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=25.3
Q ss_pred HHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHhChh
Q 025076 75 AASLLFGFFPA--VLCVFSAKLLGASLSFWIGRLVFKS 110 (258)
Q Consensus 75 ~aG~lfG~~~g--~~~~~~g~~lGa~i~y~igR~~g~~ 110 (258)
..|+..|-..+ -..+.+++.+|-.++|++.|++.++
T Consensus 83 i~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 83 IAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555443332 5677888888899999999988665
No 70
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.67 E-value=83 Score=24.71 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=12.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025076 76 ASLLFGFFPAVLCVFSAKLLGASLSFWIGRL 106 (258)
Q Consensus 76 aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~ 106 (258)
+|.+||...|++..+ ..+.|++.|.
T Consensus 67 ~~Ii~gv~aGvIg~I------lli~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII------LLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred eehhHHHHHHHHHHH------HHHHHHHHHH
Confidence 345555544443322 2567777665
No 71
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=30.99 E-value=1.4e+02 Score=24.17 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChh
Q 025076 87 LCVFSAKLLGASLSFWIGRLVFKS 110 (258)
Q Consensus 87 ~~~~~g~~lGa~i~y~igR~~g~~ 110 (258)
..+.+++.+|-.++|++.|++.++
T Consensus 104 ~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 104 LAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888889999999987654
No 72
>PRK11056 hypothetical protein; Provisional
Probab=30.29 E-value=2.4e+02 Score=22.10 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=38.9
Q ss_pred HHHHHHHhhhhhhhHhHhhhcccc-chhhHHHhhhhccccccchhHHHHHHhHHHH-HHHHHHHHHHHHHHHhhcccC
Q 025076 124 FHILSRGVEKDGWKFVVLARFSPM-PSYVINYALAATNVGFVVDFLLPTIIGCLPM-ILQNTSIGSLAGAAVASASSS 199 (258)
Q Consensus 124 l~~~~~~~~k~g~~~v~l~Rl~Pi-P~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~-~~i~~~~G~~l~~~~~~~~~~ 199 (258)
+-.+-..+.-+|-...+..-.+|+ .|.++..+..+-..- .+|+--..-..+|. .....++|...-+.+-+.+.+
T Consensus 13 lLaliaGl~~ng~fs~Lf~s~VpFSiFPlIaLvLavycLy--Q~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraeyP 88 (120)
T PRK11056 13 LLALIAGLSINGTFAALFSSIVPFSIFPLIALVLAVYCLH--QRYLNRPMPEGLPGLAAACFFLGVFLYSAFVRAEYP 88 (120)
T ss_pred HHHHHHHHhhchhhHHHHccccccHHHHHHHHHHHHHHHH--HHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCc
Confidence 444555567788777777777776 665666665542221 34444333333332 223344566555555554444
No 73
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=30.07 E-value=91 Score=22.00 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=16.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 025076 77 SLLFGFFPAVLCVFSAKLLGAS 98 (258)
Q Consensus 77 G~lfG~~~g~~~~~~g~~lGa~ 98 (258)
|.++|...|.+++.+-..+++.
T Consensus 51 GILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 51 GILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888887777776654
No 74
>PRK04972 putative transporter; Provisional
Probab=29.34 E-value=4.3e+02 Score=26.12 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhChhhhhhhhhhccchHHHHHHHHhhhhhhhHhHhhhcccc-chhhHHHhhh-hccccccchhHHHHHHh
Q 025076 97 ASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPM-PSYVINYALA-ATNVGFVVDFLLPTIIG 174 (258)
Q Consensus 97 a~i~y~igR~~g~~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~Pi-P~~l~n~~aG-~~~~~~~~~f~~~t~iG 174 (258)
+...|.+|-..|..+.+ .++++|....+++=.+-+ |.- +.+.++ ..+++. ....+.+.|
T Consensus 67 ~lF~~~vG~~~Gp~F~~----------------~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~G~~aG 127 (558)
T PRK04972 67 MLFIFCVGVEAGPNFFS----------------IFFRDGKNYLMLALVMVGSALV-IALGLGKLFGWDI--GLTAGMLAG 127 (558)
T ss_pred HHHHHHHhhhhhHHHHH----------------HHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHhCCCH--HHHHHHhhc
Confidence 45667777777765443 234567776666665554 433 333333 556666 456666666
Q ss_pred HHHHHHHHHHHHH
Q 025076 175 CLPMILQNTSIGS 187 (258)
Q Consensus 175 ~ip~~~i~~~~G~ 187 (258)
..-.+.....+..
T Consensus 128 a~T~tp~l~~a~~ 140 (558)
T PRK04972 128 SMTSTPVLVGAGD 140 (558)
T ss_pred cccCcHHHHHHHH
Confidence 6555554444433
No 75
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=29.33 E-value=2.7e+02 Score=23.75 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccccccCCC
Q 025076 182 NTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKYSTDITVAESPSDIVADSSHGK 248 (258)
Q Consensus 182 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~gli~~~~l~~~~kr~~~~~~~~~~~~~~~~~~~~~~ 248 (258)
+...|+.++....... ......++...+++++.+.+..+..|...+.-..++.++.-.|+=-||
T Consensus 76 F~l~G~~lq~~~~~~~---~~~lp~~l~~~~al~~sl~~~~~~~~~la~ilp~~essavs~~~LiGr 139 (202)
T PF07290_consen 76 FGLIGYLLQYVAISLF---GGPLPAWLAAPVALFLSLFFTRYLGRPLARILPKDESSAVSSDDLIGR 139 (202)
T ss_pred HHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcccccchhhcCcc
Confidence 4556666665543321 111123343344444444444444444444332233333334443444
No 76
>PF14143 YrhC: YrhC-like protein
Probab=29.26 E-value=2.1e+02 Score=20.30 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q 025076 177 PMILQNTSIGSLAG 190 (258)
Q Consensus 177 p~~~i~~~~G~~l~ 190 (258)
.....+.|+|..+.
T Consensus 18 LAvs~FlYiG~viP 31 (72)
T PF14143_consen 18 LAVSTFLYIGTVIP 31 (72)
T ss_pred HHHHHHHHHHhhCC
Confidence 34556778888765
No 77
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=29.22 E-value=2.7e+02 Score=21.69 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHhhhhhhhHhHhhhcccc-chhhHHHhhhhccccccchhHHHHHHhHHHHH-HHHHHHHHHHHHHHhhcccC
Q 025076 124 FHILSRGVEKDGWKFVVLARFSPM-PSYVINYALAATNVGFVVDFLLPTIIGCLPMI-LQNTSIGSLAGAAVASASSS 199 (258)
Q Consensus 124 l~~~~~~~~k~g~~~v~l~Rl~Pi-P~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~-~i~~~~G~~l~~~~~~~~~~ 199 (258)
+-.+-..+.-+|-...+..-.+|+ .|.++..+.++-.. + .+|+--..-..+|.. ..-.++|...-+.+-+.+.+
T Consensus 13 lLaliaGl~~n~~~s~L~~s~VpFSiFPlIaLvLavy~L-y-Q~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraqyP 88 (117)
T PF07226_consen 13 LLALIAGLCGNATFSALFSSEVPFSIFPLIALVLAVYCL-Y-QRYLNHPMPEGTPKLALACFFLGLFGYSAFVRAQYP 88 (117)
T ss_pred HHHHHHHHhccchhHHHHhcccccHHHHHHHHHHHHHHH-H-HHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhch
Confidence 444555567788777777777776 66666666654322 1 345444443334422 22334555555555444433
No 78
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.98 E-value=1.7e+02 Score=23.24 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhChh
Q 025076 85 AVLCVFSAKLLGASLSFWIGRLVFKS 110 (258)
Q Consensus 85 g~~~~~~g~~lGa~i~y~igR~~g~~ 110 (258)
.+.+..+|-++|-+++|++.|..-+.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 45677888899999999999976543
No 79
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=28.81 E-value=73 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 025076 212 LGIVSSILISFRIKKYSTDI 231 (258)
Q Consensus 212 ~gli~~~~l~~~~kr~~~~~ 231 (258)
+++++.+++.+++.|+.=++
T Consensus 5 lali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 5 LALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444455544444333
No 80
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=28.54 E-value=3.3e+02 Score=22.23 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=28.2
Q ss_pred hhccCChHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHhCh
Q 025076 62 IALCLPYAVFFEAAASLLFGFFPAVLCVFSAK-----LLGASLSFWIGRLVFK 109 (258)
Q Consensus 62 ~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~-----~lGa~i~y~igR~~g~ 109 (258)
+.+.+|++++=.+.+|++|-...-...+.+|. .+|+.++|-+.+++..
T Consensus 65 t~lAfPGsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 65 TLLAFPGSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred CHHHhccchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 34458888765556777765432223333333 3567778877777654
No 81
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=28.33 E-value=2.4e+02 Score=20.60 Aligned_cols=17 Identities=0% Similarity=-0.019 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhhh
Q 025076 216 SSILISFRIKKYSTDIT 232 (258)
Q Consensus 216 ~~~~l~~~~kr~~~~~~ 232 (258)
...++.++.-++.++.-
T Consensus 65 ~~~~l~~~Yv~~An~~~ 81 (91)
T PF04341_consen 65 FAWVLTWLYVRRANREF 81 (91)
T ss_pred HHHHHHHHHHHHHcccc
Confidence 33444444444555433
No 82
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=28.24 E-value=5.8e+02 Score=25.07 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=34.9
Q ss_pred CchhhHHHHHHHHHHcCc----hHHH-HH-HHHHHHH-hhccCChHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 025076 31 DKDTGIKAIREWSDRLGV----WAIP-VF-VGFHTLT-IALCLPYAVFFEAAASLLFGFFPAVLCVFSAKLL 95 (258)
Q Consensus 31 ~~~~~~~~l~~~~~~~g~----~~~~-i~-~~l~~~~-~~~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~l 95 (258)
+.....|.+++++.+... ...+ .| +..|++. ..+..|..+.-.+..+.=|.+..+..++.++...
T Consensus 80 ~~tGa~~~I~~~l~~is~D~r~q~lli~~~Fg~flEgaaGFGtpvAI~aplLv~LGf~P~~Aa~l~Li~n~~ 151 (522)
T PF02652_consen 80 VETGAFDRIRQWLASISPDRRVQVLLIAFGFGAFLEGAAGFGTPVAIAAPLLVALGFPPLQAAALCLIGNSA 151 (522)
T ss_pred HHcCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHcCCChHHHHHHHHHHcCc
Confidence 344567888888865321 2211 11 1223343 4456775443233334447788888888887654
No 83
>PF14143 YrhC: YrhC-like protein
Probab=28.16 E-value=2.2e+02 Score=20.19 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=16.2
Q ss_pred HHHHHHHcCchHHHHHHHHHHHHhhccCChHH
Q 025076 39 IREWSDRLGVWAIPVFVGFHTLTIALCLPYAV 70 (258)
Q Consensus 39 l~~~~~~~g~~~~~i~~~l~~~~~~~~iP~~~ 70 (258)
+.+-+.++.-.+..++.+...+-....+|.+.
T Consensus 3 l~~Ki~DyKrf~~vLLAvs~FlYiG~viP~~~ 34 (72)
T PF14143_consen 3 LKEKIEDYKRFAFVLLAVSTFLYIGTVIPIGA 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 34445555555554443333334556677544
No 84
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.09 E-value=41 Score=26.34 Aligned_cols=18 Identities=11% Similarity=0.480 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025076 5 KWLKIGMVVGVIAIIREV 22 (258)
Q Consensus 5 ~~~~~~~i~~li~~~~~~ 22 (258)
||+.++++++++++++++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 566666655555444443
No 85
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=27.96 E-value=2.8e+02 Score=23.46 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q 025076 206 SYLFPLLGIV 215 (258)
Q Consensus 206 ~~~~~~~gli 215 (258)
+|++-.+|++
T Consensus 56 ~wiLGlLGli 65 (191)
T PF03596_consen 56 EWILGLLGLI 65 (191)
T ss_pred HHHHHHHHHH
Confidence 3665556654
No 86
>PRK09304 arginine exporter protein; Provisional
Probab=27.89 E-value=3.6e+02 Score=22.53 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=18.2
Q ss_pred hhhHhHhhhccccchhhHHHhhhhcc
Q 025076 135 GWKFVVLARFSPMPSYVINYALAATN 160 (258)
Q Consensus 135 g~~~v~l~Rl~PiP~~l~n~~aG~~~ 160 (258)
|+..-+..-..|.|..+....-|+++
T Consensus 8 g~~~g~~~~~tPGP~~~~v~~~~~~~ 33 (207)
T PRK09304 8 GFALGAAMILPLGPQNAFVMNQGIRR 33 (207)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHcc
Confidence 55555666777889887777777653
No 87
>COG2323 Predicted membrane protein [Function unknown]
Probab=27.88 E-value=1.4e+02 Score=26.07 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=16.5
Q ss_pred hhhhhhcCCCCccccccCCCCCCcccccc
Q 025076 229 TDITVAESPSDIVADSSHGKTGREGLKKS 257 (258)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
-++-.+.+++-.| ++|+--++.+||+
T Consensus 86 ~r~~l~G~P~vlI---~nGki~e~~Lkk~ 111 (224)
T COG2323 86 LRKLLEGKPTVLI---ENGKIDEENLKKS 111 (224)
T ss_pred HHHhhcCCCEEEE---eCCeEcHHHHHHh
Confidence 3344445555554 4688888888886
No 88
>PRK01844 hypothetical protein; Provisional
Probab=27.85 E-value=1.1e+02 Score=21.71 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 025076 208 LFPLLGIVSSILISFRIKKYSTDITVAES 236 (258)
Q Consensus 208 ~~~~~gli~~~~l~~~~kr~~~~~~~~~~ 236 (258)
++.++++++.++..+++.|+.=++...|-
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk~N 36 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQKN 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34455555555666666555544444333
No 89
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=27.67 E-value=3.2e+02 Score=21.90 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhh-hhhhcCCCCccccccCCC
Q 025076 217 SILISFRIKKYSTD-ITVAESPSDIVADSSHGK 248 (258)
Q Consensus 217 ~~~l~~~~kr~~~~-~~~~~~~~~~~~~~~~~~ 248 (258)
...+..+++...|| ...|||++|-..++..|.
T Consensus 48 ~~mig~yl~~~~rr~~~rPED~~daEI~dgAGe 80 (137)
T PF12270_consen 48 ALMIGFYLRFTARRIGPRPEDREDAEIADGAGE 80 (137)
T ss_pred HHHHHHHHHHHHhhCCCCCccccccccccCCCC
Confidence 33444455444433 455666555444444443
No 90
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=27.63 E-value=2.1e+02 Score=21.01 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=23.6
Q ss_pred ccCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025076 64 LCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRL 106 (258)
Q Consensus 64 ~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~ 106 (258)
+..|.+.++.++.++..|.+.+- ..+|..+|..+.+...|.
T Consensus 16 l~~~~De~~~~~~~~~~gi~~~~--~~~g~i~g~~~~~~~~k~ 56 (95)
T PF07178_consen 16 LFWPMDEFIPALILFVIGILSGH--FLIGLILGIVLWWGYRKF 56 (95)
T ss_pred eeecHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHH
Confidence 45676766555556666665554 335555666666655554
No 91
>PLN02309 5'-adenylylsulfate reductase
Probab=27.34 E-value=37 Score=32.74 Aligned_cols=18 Identities=17% Similarity=-0.067 Sum_probs=14.6
Q ss_pred CccccccCCCCCCccccc
Q 025076 239 DIVADSSHGKTGREGLKK 256 (258)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ 256 (258)
.+-+|+|.|||.|+|-+|
T Consensus 295 ~~g~~~RaGRw~w~~~~k 312 (457)
T PLN02309 295 LPGQHEREGRWWWEDAKA 312 (457)
T ss_pred CCCCCcccccccCCCCCc
Confidence 445799999999998755
No 92
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.73 E-value=1e+02 Score=29.98 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccccccCCCCCCccc
Q 025076 208 LFPLLGIVSSILISFRIKKYSTDITVAESPSDIVADSSHGKTGREGL 254 (258)
Q Consensus 208 ~~~~~gli~~~~l~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (258)
++.++|++.. ++-..+|+-..+-+.+||+-||-.+.-.+.+|||=+
T Consensus 236 VifLvGlvam-ILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~v 281 (593)
T KOG1277|consen 236 VIFLVGLVAM-ILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQV 281 (593)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhccchhhhccccccccccccceee
Confidence 3445554443 333445555544444455445554455556788754
No 93
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=26.52 E-value=1.9e+02 Score=21.75 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=23.7
Q ss_pred ccCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025076 64 LCLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRL 106 (258)
Q Consensus 64 ~~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~ 106 (258)
+.+|.+..+.++.++..|.+.+- ..+|..+|..+.+.+.|.
T Consensus 22 ~~~~~DE~~~~~~~~~~Gi~~~~--~l~g~i~g~~~~~~~r~l 62 (101)
T PRK13707 22 FGLPLDELIPAAICIGWGITTSK--YLFGIIAAVLVWFGIRKL 62 (101)
T ss_pred EeeeHHHHHHHHHHHHHHHHHch--HHHHHHHHHHHHHHHHHH
Confidence 35677765555455555554442 456666777666666653
No 94
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=26.43 E-value=5.1e+02 Score=23.76 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=10.9
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHh
Q 025076 56 GFHTLTIALCLPYAVFFEAAASLLFG 81 (258)
Q Consensus 56 ~l~~~~~~~~iP~~~~l~~~aG~lfG 81 (258)
+...+....|.|. +..+.|+.+.
T Consensus 50 l~~tll~alp~pl---~~~~~g~~L~ 72 (340)
T PF12794_consen 50 LLLTLLLALPLPL---LLLAIGYLLQ 72 (340)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3334444455554 2334566544
No 95
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=26.08 E-value=2.1e+02 Score=21.17 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=19.3
Q ss_pred cCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 025076 65 CLPYAVFFEAAASLLFGFFPAVLCVFSAKLLGASLS 100 (258)
Q Consensus 65 ~iP~~~~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~ 100 (258)
.+|.+.++.+..++..|.+.+.. ++|..+|..++
T Consensus 17 g~t~DE~i~~~~~~~~Gi~~~~~--l~g~~lg~~~~ 50 (95)
T TIGR02762 17 GLPLDEFLPGATLFGIGILSGKA--LIGLILGAAVM 50 (95)
T ss_pred EeeHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHH
Confidence 45666654555555566655543 35566666555
No 96
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=26.02 E-value=3e+02 Score=20.96 Aligned_cols=36 Identities=3% Similarity=-0.165 Sum_probs=23.9
Q ss_pred hhhhHhHhhhccccchhhHHHhhhhccccccchhHHHHHHh
Q 025076 134 DGWKFVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIG 174 (258)
Q Consensus 134 ~g~~~v~l~Rl~PiP~~l~n~~aG~~~~~~~~~f~~~t~iG 174 (258)
+.....+.....|.- -..-|+.+=+. +.|...+++.
T Consensus 28 ~~~~~~l~l~~lPLL----l~l~Gll~g~~-~t~~W~sfv~ 63 (109)
T PF09842_consen 28 RPGGSWLALKLLPLL----LPLPGLLRGRP-YTYAWASFVI 63 (109)
T ss_pred CcHHHHHHHHHHHHH----HHHHHHHcCCH-HHHHHHHHHH
Confidence 334444567888841 12368888888 8999998763
No 97
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=25.41 E-value=58 Score=25.00 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 025076 211 LLGIVSSILISFRIKKYSTD 230 (258)
Q Consensus 211 ~~gli~~~~l~~~~kr~~~~ 230 (258)
..++++.+.+.++.||+.++
T Consensus 31 ~i~~~~g~~~~~~~~~~v~~ 50 (111)
T PF09946_consen 31 VIVFLAGILLVYLYRRRVED 50 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 33444445555666666554
No 98
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=25.32 E-value=1e+02 Score=29.78 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 025076 72 FEAAASLLFGFFPAVLCVFSAKLLG 96 (258)
Q Consensus 72 l~~~aG~lfG~~~g~~~~~~g~~lG 96 (258)
....+|++|||++|.+...++-.+|
T Consensus 101 pi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 101 LVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3556899999999999888888777
No 99
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=24.85 E-value=1.4e+02 Score=19.57 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhhhh
Q 025076 219 LISFRIKKYSTDIT 232 (258)
Q Consensus 219 ~l~~~~kr~~~~~~ 232 (258)
.+....|++--+-+
T Consensus 19 ~I~~~~K~ygYkht 32 (50)
T PF12606_consen 19 SICTTLKAYGYKHT 32 (50)
T ss_pred HHHHHhhccccccc
Confidence 33445555544433
No 100
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.71 E-value=2.2e+02 Score=19.03 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 025076 122 KYFHILSRG 130 (258)
Q Consensus 122 ~~l~~~~~~ 130 (258)
+++++.++.
T Consensus 55 k~l~~le~e 63 (68)
T PF06305_consen 55 KELKKLEKE 63 (68)
T ss_pred HHHHHHHHH
Confidence 344444443
No 101
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=24.57 E-value=1e+02 Score=24.26 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 025076 202 SQVWSYLFPLLGIVSSILISF 222 (258)
Q Consensus 202 ~~~~~~~~~~~gli~~~~l~~ 222 (258)
..+|++.+++++.+++++-.+
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~ 52 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFF 52 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHH
Confidence 345666666655554433333
No 102
>COG2261 Predicted membrane protein [Function unknown]
Probab=23.30 E-value=2.3e+02 Score=20.67 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=23.1
Q ss_pred HHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Q 025076 76 ASLLFGFF-----PAVLCVFSAKLLGASLSFWIGRLV 107 (258)
Q Consensus 76 aG~lfG~~-----~g~~~~~~g~~lGa~i~y~igR~~ 107 (258)
++.+++.+ .+...+.+.+++||.+.-++.|.+
T Consensus 43 g~~l~~~~g~~~~~~~~~~~i~avIGAvIll~i~~~v 79 (82)
T COG2261 43 GGWLLGALGFGGPGGNIASFIVAVIGAVILLAIVRLV 79 (82)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 345678888999999988887765
No 103
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=23.26 E-value=94 Score=29.90 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 025076 212 LGIVSSILISFRIKKYSTDI 231 (258)
Q Consensus 212 ~gli~~~~l~~~~kr~~~~~ 231 (258)
..++....+.++++|..++.
T Consensus 207 ~~~i~~~~~~~ya~kv~~~p 226 (465)
T PF03606_consen 207 FTLIAIAYVHRYAQKVKKDP 226 (465)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33345555566777666655
No 104
>COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]
Probab=23.01 E-value=2.2e+02 Score=24.72 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 025076 6 WLKIGMVVGVIAIIREVSKHYG 27 (258)
Q Consensus 6 ~~~~~~i~~li~~~~~~~~~~~ 27 (258)
|.-+.++++++++..++|+.|+
T Consensus 119 w~~~l~~~~l~iTGivmw~~y~ 140 (218)
T COG2864 119 WTAILAIVLLLITGIVIWRPYF 140 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 7777778888888888888884
No 105
>COG1300 SpoIIM Uncharacterized membrane protein [Function unknown]
Probab=22.75 E-value=4.9e+02 Score=22.25 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025076 71 FFEAAASLLFGFFPAVLCVFSAKLLGASLSFW 102 (258)
Q Consensus 71 ~l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~ 102 (258)
++..++|..+|.+.-..+..-|.++|+.+.+.
T Consensus 85 ll~~~g~~~lGl~~il~l~fNG~ivG~~~~~~ 116 (207)
T COG1300 85 LLAIAGGLTLGLPTILVLLFNGFIVGFFVGLV 116 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 45677888899888887888888888888877
No 106
>PRK00523 hypothetical protein; Provisional
Probab=22.68 E-value=1.6e+02 Score=20.94 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 025076 211 LLGIVSSILISFRIKKYSTDITVA 234 (258)
Q Consensus 211 ~~gli~~~~l~~~~kr~~~~~~~~ 234 (258)
++++++..+..+++.|+.=++...
T Consensus 12 i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556665555444443
No 107
>PF06194 Phage_Orf51: Phage Conserved Open Reading Frame 51; InterPro: IPR009338 This entry is represented by the Staphylococcus phage PVL (bacteriophage phi-PVL), Orf51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.56 E-value=29 Score=24.78 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=10.4
Q ss_pred cCCCCCCcccccc
Q 025076 245 SHGKTGREGLKKS 257 (258)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (258)
-|-||+|+|+||.
T Consensus 41 GH~kt~~~gvKkt 53 (80)
T PF06194_consen 41 GHHKTMWKGVKKT 53 (80)
T ss_pred eeecccccchhhh
Confidence 4678999999973
No 108
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=22.40 E-value=89 Score=18.00 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025076 211 LLGIVSSILISFRIKKY 227 (258)
Q Consensus 211 ~~gli~~~~l~~~~kr~ 227 (258)
++|++++....++.+||
T Consensus 15 ~~G~~l~~~~~~~~~~r 31 (34)
T TIGR01167 15 LLGLLLLGLGGLLLRKR 31 (34)
T ss_pred HHHHHHHHHHHHHheec
Confidence 34443333344444443
No 109
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.30 E-value=4.7e+02 Score=26.81 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=27.4
Q ss_pred CCchhhHHHHHHHHHHcCchHHHHHHHHHH---HHhhccCChHHHHHHHHHHH
Q 025076 30 FDKDTGIKAIREWSDRLGVWAIPVFVGFHT---LTIALCLPYAVFFEAAASLL 79 (258)
Q Consensus 30 ~~~~~~~~~l~~~~~~~g~~~~~i~~~l~~---~~~~~~iP~~~~l~~~aG~l 79 (258)
++...++....+-+.-.|...-++|+++.+ +...++||...++.++.-|+
T Consensus 55 ~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v 107 (697)
T PF09726_consen 55 WPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYV 107 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445555666666555555544344444433 34556789877555444444
No 110
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=21.94 E-value=7.4e+02 Score=24.06 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=15.1
Q ss_pred hhcccc-chhhHHHhhhhcccc
Q 025076 142 ARFSPM-PSYVINYALAATNVG 162 (258)
Q Consensus 142 ~Rl~Pi-P~~l~n~~aG~~~~~ 162 (258)
.|++|. -.++-|+.++.++.|
T Consensus 105 ~rlla~L~~Dvr~ISf~~s~lp 126 (546)
T COG4615 105 ARLLAGLTSDVRNISFAFSRLP 126 (546)
T ss_pred cchhhhhcccccceeehHhhhH
Confidence 577775 777777777776666
No 111
>PF13974 YebO: YebO-like protein
Probab=21.89 E-value=2.4e+02 Score=20.47 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhChhhhhhhhhhccchHHHHHHHHhhhhhhhHhHhhhcccc
Q 025076 88 CVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSPM 147 (258)
Q Consensus 88 ~~~~g~~lGa~i~y~igR~~g~~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~Pi 147 (258)
++.+...+|-++-|++-|.--| .|+.++-+++..+++--..-++-|++|-
T Consensus 3 ~~~~~~lv~livWFFVnRaSvR----------ANEQI~LL~~ileqQKrQn~LL~rL~~~ 52 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFFVNRASVR----------ANEQIELLEEILEQQKRQNALLRRLCEA 52 (80)
T ss_pred ehHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556677788888888886432 3456666666665555555577788874
No 112
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=21.51 E-value=7.2e+02 Score=23.77 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhhhhhhHhHhhhcc
Q 025076 122 KYFHILSRGVEKDGWKFVVLARFS 145 (258)
Q Consensus 122 ~~l~~~~~~~~k~g~~~v~l~Rl~ 145 (258)
+..+..+++.++.+|...++.-++
T Consensus 81 ~~~~~v~~fm~~~~Fl~ffIa~LI 104 (414)
T PF03390_consen 81 SVVEAVTNFMKGSNFLYFFIAALI 104 (414)
T ss_pred HHHHHHHHHhccCChHHHHHHHHH
Confidence 457778888888787776655443
No 113
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=21.49 E-value=2.9e+02 Score=24.87 Aligned_cols=23 Identities=9% Similarity=0.237 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025076 205 WSYLFPLLGIVSSILISFRIKKY 227 (258)
Q Consensus 205 ~~~~~~~~gli~~~~l~~~~kr~ 227 (258)
++-+..+++.+.+.....++.|.
T Consensus 75 ~eg~~~lvAv~~l~~m~~Wm~~~ 97 (283)
T TIGR00145 75 LEGIFGVIAVVMLSYMGLWMLRM 97 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455545444444455443
No 114
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=21.44 E-value=1.5e+02 Score=26.38 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=14.1
Q ss_pred HHhhhhhhhcCCCCccccccC
Q 025076 226 KYSTDITVAESPSDIVADSSH 246 (258)
Q Consensus 226 r~~~~~~~~~~~~~~~~~~~~ 246 (258)
+..++.++.|+...+++||+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ 244 (263)
T PRK14780 224 IKWKKDKDSEDNKKKIADEND 244 (263)
T ss_pred HhhcccccchhccCccccccc
Confidence 344556667777788888764
No 115
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=21.30 E-value=4e+02 Score=24.42 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhhhhhhccchHHHHHHHHhhhhhhhHhHhhhccc
Q 025076 80 FGFFPAVLCVFSAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFVVLARFSP 146 (258)
Q Consensus 80 fG~~~g~~~~~~g~~lGa~i~y~igR~~g~~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v~l~Rl~P 146 (258)
+.-|.|+.+.++-++..-.+-+.+|+..-++.- +.+..+.+-.+.++|+-++++..-=.+|
T Consensus 195 ~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~------~~~~~mS~~T~~lq~qL~~AL~vQT~IP 255 (310)
T PF10319_consen 195 FRSWIGIIILTIISSYSIILYFVLGYKIMKKLN------KMSSTMSKKTKRLQRQLFKALIVQTVIP 255 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hchhhhCHhHHHHHHHHHHHHHHHHHhH
Confidence 446788887777777777777778877644321 1222233333345666677777776677
No 116
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=20.82 E-value=1.6e+02 Score=26.44 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=13.6
Q ss_pred ccccccchhHHHHHHhHHHH
Q 025076 159 TNVGFVVDFLLPTIIGCLPM 178 (258)
Q Consensus 159 ~~~~~~~~f~~~t~iG~ip~ 178 (258)
+..+. +-|-+++.+..+|-
T Consensus 8 s~~n~-~gf~iG~ii~~ipF 26 (267)
T PF07672_consen 8 SQFNP-WGFNIGTIIVNIPF 26 (267)
T ss_pred eeecc-ccchhhHHHHHhhH
Confidence 44566 67888888887774
No 117
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=20.73 E-value=1.7e+02 Score=20.72 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCchHH
Q 025076 36 IKAIREWSDRLGVWAI 51 (258)
Q Consensus 36 ~~~l~~~~~~~g~~~~ 51 (258)
-+.+...+.+.|.|++
T Consensus 2 E~ei~k~~~sQG~fA~ 17 (71)
T PF10960_consen 2 EEEIIKLALSQGIFAV 17 (71)
T ss_pred hHHHHHHHHHcCcHHH
Confidence 3566777778888875
No 118
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=20.57 E-value=62 Score=31.32 Aligned_cols=18 Identities=17% Similarity=-0.067 Sum_probs=14.5
Q ss_pred CccccccCCCCCCccccc
Q 025076 239 DIVADSSHGKTGREGLKK 256 (258)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ 256 (258)
.+-+|+|.|||.|+|-+|
T Consensus 300 ~~ged~RaGRW~w~~~~k 317 (463)
T TIGR00424 300 LPGQHEREGRWWWEDAKA 317 (463)
T ss_pred CCCCCcccccccCCCCCC
Confidence 445789999999998655
No 119
>COG2056 Predicted permease [General function prediction only]
Probab=20.52 E-value=1.9e+02 Score=27.26 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhh
Q 025076 207 YLFPLLGIVSSILISFRI-KKYSTD 230 (258)
Q Consensus 207 ~~~~~~gli~~~~l~~~~-kr~~~~ 230 (258)
..++.++.++..++..+. +||-|+
T Consensus 194 m~ip~lgMi~GLl~ai~~~YrKpRe 218 (444)
T COG2056 194 MWIPGLGMIVGLLLAIFVSYRKPRE 218 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 445666766555555555 444444
No 120
>PRK10229 threonine efflux system; Provisional
Probab=20.52 E-value=4.9e+02 Score=21.50 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=27.7
Q ss_pred HhHhhhccccchhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHH
Q 025076 138 FVVLARFSPMPSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSI 185 (258)
Q Consensus 138 ~v~l~Rl~PiP~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~ 185 (258)
..++.=++|.|..+...--|+++ . ++-.+.+.+|..-...++..+
T Consensus 11 ~~~~~~~sPGP~~~~vi~~~~~~-G--~~~~~~~~~G~~~g~~i~~~l 55 (206)
T PRK10229 11 VHIVALMSPGPDFFFVSQTAVSR-S--RKEAMMGVLGITCGVMVWAGV 55 (206)
T ss_pred HHHHHhcCCCchhHHHHHHHHhc-c--HHHHHHHHHHHHHHHHHHHHH
Confidence 34566777889776666556544 3 355555666776666666554
No 121
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=20.47 E-value=7.7e+02 Score=23.69 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHHHHH--HHHHHHHHHHhChh
Q 025076 79 LFGFFPAVLCVFSAKLLG--ASLSFWIGRLVFKS 110 (258)
Q Consensus 79 lfG~~~g~~~~~~g~~lG--a~i~y~igR~~g~~ 110 (258)
+||+|.-.++..+...-| +.+.|.=+|.+-.+
T Consensus 68 VFG~Wa~vL~~~m~~~~G~~~a~~Y~~srnytEp 101 (438)
T PF07399_consen 68 VFGFWAIVLILAMAFLEGWKAAIAYLESRNYTEP 101 (438)
T ss_pred eehHHHHHHHHHHHHHcCHHHHHHHHhccCCCcc
Confidence 588888777777776665 45667777766554
No 122
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=20.25 E-value=5.3e+02 Score=21.75 Aligned_cols=21 Identities=10% Similarity=-0.058 Sum_probs=11.7
Q ss_pred hHhhhccccchhhHHHhhhhc
Q 025076 139 VVLARFSPMPSYVINYALAAT 159 (258)
Q Consensus 139 v~l~Rl~PiP~~l~n~~aG~~ 159 (258)
.=.+|+-+..|.+.|...+..
T Consensus 132 AG~~~m~~~~F~~~n~~ga~i 152 (208)
T COG0586 132 AGMSKMPLRRFLLYNILGALL 152 (208)
T ss_pred hhhccCChHHHHHHHHHHHHH
Confidence 335563333666777766654
No 123
>PRK03072 heat shock protein HtpX; Provisional
Probab=20.23 E-value=2.6e+02 Score=24.99 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=19.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Q 025076 75 AASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKS 110 (258)
Q Consensus 75 ~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~~g~~ 110 (258)
+.|+++| ..|.+...+-+.....++|+.+.+.-.+
T Consensus 23 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 57 (288)
T PRK03072 23 FIGALFG-RTGLGIAVLIAVGMNAYVYWNSDKLALR 57 (288)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455554 3344444455556677777777665443
No 124
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=20.22 E-value=6.6e+02 Score=22.83 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=13.7
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHH
Q 025076 54 FVGFHTLTIALCLPYAVFFEAAASLL 79 (258)
Q Consensus 54 ~~~l~~~~~~~~iP~~~~l~~~aG~l 79 (258)
.++.++.....-+|....+.+.+|.+
T Consensus 208 gv~~~i~l~ilgv~~alllgil~gll 233 (344)
T PRK12287 208 GLVAWAMLAALDVRFAFVWGLLAFAL 233 (344)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 33334444555677766555555554
No 125
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=20.15 E-value=7.2e+02 Score=23.24 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 025076 211 LLGIVSSILISFRIKKYSTDI 231 (258)
Q Consensus 211 ~~gli~~~~l~~~~kr~~~~~ 231 (258)
+++.++..++.+.+|++..++
T Consensus 321 lig~vvtavl~~~~k~~~~~~ 341 (359)
T PRK10478 321 AVGAVVTAVCVNVLKSLARKN 341 (359)
T ss_pred HHHHHHHHHHHHHHccccccc
Confidence 455556666667777655444
No 126
>COG4854 Predicted membrane protein [Function unknown]
Probab=20.04 E-value=1.1e+02 Score=23.66 Aligned_cols=24 Identities=4% Similarity=0.247 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 025076 207 YLFPLLGIVSSILISFRIKKYSTD 230 (258)
Q Consensus 207 ~~~~~~gli~~~~l~~~~kr~~~~ 230 (258)
|.+.+.++.+......+.|+|.++
T Consensus 31 ~~iav~af~ag~~~l~l~k~Rv~~ 54 (126)
T COG4854 31 WFIAVIAFFAGAALLSLVKRRVDE 54 (126)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666677777665
Done!