Query 025076
Match_columns 258
No_of_seqs 204 out of 1794
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 63.0 14 0.00048 23.8 4.6 11 212-222 21-31 (54)
2 4ezc_A UREA transporter 1; mem 53.9 40 0.0014 30.5 7.7 74 33-110 34-108 (384)
3 2jwa_A Receptor tyrosine-prote 27.9 61 0.0021 19.9 3.2 9 221-229 32-40 (44)
4 2ks1_B Epidermal growth factor 26.8 67 0.0023 19.6 3.2 9 221-229 32-40 (44)
5 2l2t_A Receptor tyrosine-prote 24.2 75 0.0026 19.4 3.1 8 222-229 32-39 (44)
6 3p5n_A RIBU, riboflavin uptake 17.3 1.1E+02 0.0036 24.4 3.6 28 72-99 50-77 (189)
7 2hfr_A Fowlicidin-3, cathelici 16.9 64 0.0022 17.2 1.3 17 143-159 2-19 (27)
8 3hsh_A Endostatin, collagen al 14.0 15 0.00051 23.9 -2.0 18 132-149 39-56 (56)
9 1zza_A Stannin, AG8_1; helix, 13.1 1.2E+02 0.004 20.7 2.2 21 223-243 35-55 (90)
10 3gia_A Uncharacterized protein 11.6 5.9E+02 0.02 22.0 7.3 87 148-245 354-440 (444)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.02 E-value=14 Score=23.80 Aligned_cols=11 Identities=9% Similarity=0.262 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 025076 212 LGIVSSILISF 222 (258)
Q Consensus 212 ~gli~~~~l~~ 222 (258)
.|+.++.++.+
T Consensus 21 ~GLllL~li~~ 31 (54)
T 2knc_A 21 GGLLLLTILVL 31 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 2
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=53.90 E-value=40 Score=30.49 Aligned_cols=74 Identities=11% Similarity=0.008 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHcCchHHHHHHHHHHHHhhccCChHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Q 025076 33 DTGIKAIREWSDRLGVWAIPVFVGFHTLTIALCLPYAVF-FEAAASLLFGFFPAVLCVFSAKLLGASLSFWIGRLVFKS 110 (258)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~~i~~~l~~~~~~~~iP~~~~-l~~~aG~lfG~~~g~~~~~~g~~lGa~i~y~igR~~g~~ 110 (258)
..|+.+..+|++++....-++=.++--+.++++.+.... +.+..|..++-+... +.+.+|+.++...++.++.+
T Consensus 34 ~g~~~~~~~~~~~~~~~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~a----l~allG~~vstltA~llg~~ 108 (384)
T 4ezc_A 34 TGDMKEFANWLKDKPQALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCA----LNGCVGTVVSTLTALLLSQD 108 (384)
T ss_dssp STTCHHHHHHHHTSCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHHHHHHHTTCC
T ss_pred CCchHHHHHHHhcCCcHHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHhCCC
Confidence 457889999999977544444445555677777664321 233445555444333 44455555555555555544
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=27.91 E-value=61 Score=19.85 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=4.6
Q ss_pred HHHHHHHhh
Q 025076 221 SFRIKKYST 229 (258)
Q Consensus 221 ~~~~kr~~~ 229 (258)
..++|||..
T Consensus 32 ~~~~RRR~~ 40 (44)
T 2jwa_A 32 GILIKRRQQ 40 (44)
T ss_dssp HHHHHHHCS
T ss_pred Hhheehhhh
Confidence 345555543
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.82 E-value=67 Score=19.63 Aligned_cols=9 Identities=0% Similarity=0.168 Sum_probs=4.1
Q ss_pred HHHHHHHhh
Q 025076 221 SFRIKKYST 229 (258)
Q Consensus 221 ~~~~kr~~~ 229 (258)
++++|||..
T Consensus 32 ~~~~RRr~~ 40 (44)
T 2ks1_B 32 GLFMRRRHI 40 (44)
T ss_dssp HHHHHTTTC
T ss_pred HHHhhhhHh
Confidence 344554433
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=24.21 E-value=75 Score=19.43 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.6
Q ss_pred HHHHHHhh
Q 025076 222 FRIKKYST 229 (258)
Q Consensus 222 ~~~kr~~~ 229 (258)
+++|||.+
T Consensus 32 ~~~RRRr~ 39 (44)
T 2l2t_A 32 VYVRRKSI 39 (44)
T ss_dssp HHHHTTCS
T ss_pred HHhhhhhh
Confidence 44454433
No 6
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=17.35 E-value=1.1e+02 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 025076 72 FEAAASLLFGFFPAVLCVFSAKLLGASL 99 (258)
Q Consensus 72 l~~~aG~lfG~~~g~~~~~~g~~lGa~i 99 (258)
..+.+|+++|+..|.+...++..++..+
T Consensus 50 ~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 50 PSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4667899999999998888887777665
No 7
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=16.85 E-value=64 Score=17.18 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=12.6
Q ss_pred hcccc-chhhHHHhhhhc
Q 025076 143 RFSPM-PSYVINYALAAT 159 (258)
Q Consensus 143 Rl~Pi-P~~l~n~~aG~~ 159 (258)
||.|. |-.+...++|+.
T Consensus 2 RF~P~vpvaintvaagin 19 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGIN 19 (27)
T ss_dssp CSCSSSSSHHHHHHHHHT
T ss_pred CccccCcceEEEeehhhh
Confidence 78895 887777777754
No 8
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Probab=13.95 E-value=15 Score=23.85 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=15.1
Q ss_pred hhhhhhHhHhhhccccch
Q 025076 132 EKDGWKFVVLARFSPMPS 149 (258)
Q Consensus 132 ~k~g~~~v~l~Rl~PiP~ 149 (258)
-++||+.+.+..++|+|+
T Consensus 39 Vr~Gwr~v~Lg~~ip~p~ 56 (56)
T 3hsh_A 39 VQNGFRKVQLEARTPLPR 56 (56)
T ss_dssp ETTEEEEECEEEEEECCC
T ss_pred EcCceeeeeecccccCCC
Confidence 378899999999999874
No 9
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=13.06 E-value=1.2e+02 Score=20.73 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=12.7
Q ss_pred HHHHHhhhhhhhcCCCCcccc
Q 025076 223 RIKKYSTDITVAESPSDIVAD 243 (258)
Q Consensus 223 ~~kr~~~~~~~~~~~~~~~~~ 243 (258)
+..-|..+....|+++.++-|
T Consensus 35 wcylrlqri~qsedeesivge 55 (90)
T 1zza_A 35 WCYLRLQRISQSEDEESIVGD 55 (90)
T ss_dssp HTTTSSCSSCSSCCCTTTTTT
T ss_pred HHHHHHHHHhccccchhhccC
Confidence 444556666666666666655
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=11.59 E-value=5.9e+02 Score=21.95 Aligned_cols=87 Identities=3% Similarity=-0.119 Sum_probs=0.0
Q ss_pred chhhHHHhhhhccccccchhHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025076 148 PSYVINYALAATNVGFVVDFLLPTIIGCLPMILQNTSIGSLAGAAVASASSSWKSQVWSYLFPLLGIVSSILISFRIKKY 227 (258)
Q Consensus 148 P~~l~n~~aG~~~~~~~~~f~~~t~iG~ip~~~i~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~gli~~~~l~~~~kr~ 227 (258)
.+.+++...=..+-+. ...-....+|.+....+........- ......+...+...++..+...+.+|+
T Consensus 354 ~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (444)
T 3gia_A 354 IYLFVILSHYILIDEV-GGRKEIVIFSFIVVLGVFLLLLYYQW----------ITNRFVFYGIIATFIGVLIFEIIYRKV 422 (444)
T ss_dssp HHHHHHHHHHHTHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHH----------HHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHH----------hcCchHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhhhhhcCCCCcccccc
Q 025076 228 STDITVAESPSDIVADSS 245 (258)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~ 245 (258)
.+++....+..|..+||.
T Consensus 423 ~~~~~~~~~~~~~~~~~~ 440 (444)
T 3gia_A 423 TKRTFSNNMYVKSLESSG 440 (444)
T ss_dssp HCCCCCGGGTTTC-----
T ss_pred ccCCCcCceeeeehhhcC
Done!