Query 025076
Match_columns 258
No_of_seqs 204 out of 1794
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 03:17:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025076.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025076hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 11.1 3.2E+02 0.023 20.8 9.9 20 90-109 295-314 (447)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 9.0 1.8E+02 0.013 19.0 4.3 19 207-225 8-26 (158)
3 d1q90m_ f.23.25.1 (M:) PetM su 8.6 1.5E+02 0.011 15.2 4.2 24 82-105 4-28 (34)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 7.8 5E+02 0.036 20.9 7.6 14 165-178 18-31 (444)
5 d2osoa1 d.278.1.3 (A:5-156) Hy 7.7 70 0.0051 22.7 1.4 41 91-139 39-79 (152)
6 d3b60a2 f.37.1.1 (A:10-328) Mu 7.7 3.8E+02 0.027 19.2 8.1 31 165-195 15-45 (319)
7 d2jm6b1 f.1.4.1 (B:147-308) EA 7.4 2.3E+02 0.017 19.8 4.4 47 5-51 95-149 (162)
8 d2r6gg1 f.58.1.1 (G:7-296) Mal 7.0 4.5E+02 0.033 19.4 7.2 94 82-176 83-192 (290)
9 d1y5ic1 f.21.3.1 (C:1-225) Res 7.0 2.5E+02 0.018 20.7 4.6 18 211-228 96-113 (225)
10 d1nekd_ f.21.2.2 (D:) Succinat 6.3 3.4E+02 0.025 17.5 5.3 57 1-60 9-67 (113)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.09 E-value=3.2e+02 Score=20.81 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhCh
Q 025076 90 FSAKLLGASLSFWIGRLVFK 109 (258)
Q Consensus 90 ~~g~~lGa~i~y~igR~~g~ 109 (258)
.++..+|..++-++.++.++
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~ 314 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFR 314 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTST
T ss_pred hhhhhhhhhhhhhhhhhccc
Confidence 33444555554444444443
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.97 E-value=1.8e+02 Score=19.03 Aligned_cols=19 Identities=11% Similarity=0.373 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025076 207 YLFPLLGIVSSILISFRIK 225 (258)
Q Consensus 207 ~~~~~~gli~~~~l~~~~k 225 (258)
.++.++|+++.+.++-+.+
T Consensus 8 VViaIIgILaaia~P~~~~ 26 (158)
T d2pila_ 8 IVIAIVGILAAVALPAYQD 26 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665543
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.56 E-value=1.5e+02 Score=15.21 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH
Q 025076 82 FFPAVLCVFSAKLL-GASLSFWIGR 105 (258)
Q Consensus 82 ~~~g~~~~~~g~~l-Ga~i~y~igR 105 (258)
+..|..+.++|.++ |-.++|.+-|
T Consensus 4 fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHHHHHHhhee
Confidence 34445555555443 5555555544
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=7.81 E-value=5e+02 Score=20.86 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=6.1
Q ss_pred chhHHHHHHhHHHH
Q 025076 165 VDFLLPTIIGCLPM 178 (258)
Q Consensus 165 ~~f~~~t~iG~ip~ 178 (258)
+..+++..+|.+-.
T Consensus 18 ~~~~la~liGi~~g 31 (444)
T d1otsa_ 18 AILFMAAVVGTLVG 31 (444)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 5
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}
Probab=7.70 E-value=70 Score=22.72 Aligned_cols=41 Identities=15% Similarity=0.012 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhhhhhccchHHHHHHHHhhhhhhhHh
Q 025076 91 SAKLLGASLSFWIGRLVFKSSNSAMEWAQRNKYFHILSRGVEKDGWKFV 139 (258)
Q Consensus 91 ~g~~lGa~i~y~igR~~g~~~i~~~~~~~~~~~l~~~~~~~~k~g~~~v 139 (258)
++..-.+.+-|+.||.+|++.-. +.++.+.++++++|+-.+
T Consensus 39 l~~~~~~~iLY~aGk~lGr~~~~--------k~~eel~~ff~~~g~G~L 79 (152)
T d2osoa1 39 VKELGSETSLYEIGEEFGKMLSP--------KNIEELKKIFKLMNFGDL 79 (152)
T ss_dssp HC--CCCCCHHHHHHHHHHHHCC--------SSHHHHHHHHHHHTCCEE
T ss_pred hcccchHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHcCCceE
Confidence 34444457789999999886432 236677778888887543
No 6
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.68 E-value=3.8e+02 Score=19.18 Aligned_cols=31 Identities=16% Similarity=-0.015 Sum_probs=15.2
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 025076 165 VDFLLPTIIGCLPMILQNTSIGSLAGAAVAS 195 (258)
Q Consensus 165 ~~f~~~t~iG~ip~~~i~~~~G~~l~~~~~~ 195 (258)
+..++...+..+...+........++...|.
T Consensus 15 k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~ 45 (319)
T d3b60a2 15 KAGLIVAGIALILNAASDTFMLSLLKPLLDD 45 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555666554
No 7
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.36 E-value=2.3e+02 Score=19.80 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcC--------CCCchhhHHHHHHHHHHcCchHH
Q 025076 5 KWLKIGMVVGVIAIIREVSKHYGF--------GFDKDTGIKAIREWSDRLGVWAI 51 (258)
Q Consensus 5 ~~~~~~~i~~li~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 51 (258)
.|-|+..++++-..+..-....++ .+-.....+.+.+|++++|-|.-
T Consensus 95 NWGRIval~~F~~~la~~~~~~~~~~~v~~i~~~~~~fl~~~l~~WI~~~GGW~g 149 (162)
T d2jm6b1 95 NWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDG 149 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSHHHHHHTTTHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhHHHHHHHCCCHHH
Confidence 488887655544433332222211 11111224567778888888864
No 8
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=6.97 E-value=4.5e+02 Score=19.43 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh--hhhhhh---hhhccc-----h---HHHHHHH---HhhhhhhhHhHhhhcc
Q 025076 82 FFPAVLCVFSAKLLGASLSFWIGRLVFK--SSNSAM---EWAQRN-----K---YFHILSR---GVEKDGWKFVVLARFS 145 (258)
Q Consensus 82 ~~~g~~~~~~g~~lGa~i~y~igR~~g~--~~i~~~---~~~~~~-----~---~l~~~~~---~~~k~g~~~v~l~Rl~ 145 (258)
...+...+.++..+|...+|.+.|+-.+ +..... ...-.. . .+.+... ....+....+++.-..
T Consensus 83 l~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~~~~~~~~~~~P~~v~~i~~~~~~~~~g~~~~~~~~~~~~~ii~~~~~ 162 (290)
T d2r6gg1 83 VKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLG 162 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHHHSTTSSTTSHHHHHHHHTT
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhhhhhHHHHHHHhhccccccchhheeehhhcccccCCcccccccCchhhhhhhccc
Confidence 4455666777778888888998886322 222100 000000 0 1111111 1111223334444333
Q ss_pred ccchhhHHHhhhhccccccchhHHHHHHhHH
Q 025076 146 PMPSYVINYALAATNVGFVVDFLLPTIIGCL 176 (258)
Q Consensus 146 PiP~~l~n~~aG~~~~~~~~~f~~~t~iG~i 176 (258)
-+|+....+.+++.++|- ..+=.+...|+-
T Consensus 163 ~~pf~~~~~~~~l~~i~~-~l~EAA~~~GAs 192 (290)
T d2r6gg1 163 GIALHVWTIKGYFETIDS-SLEEAAALDGAT 192 (290)
T ss_dssp TTHHHHHHHHHHHTTSCT-HHHHHHHHTTCC
T ss_pred ceeeeeeccchhhhcchh-hhhhhHhhcCCC
Confidence 458888889999999998 777777766663
No 9
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=6.96 E-value=2.5e+02 Score=20.69 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025076 211 LLGIVSSILISFRIKKYS 228 (258)
Q Consensus 211 ~~gli~~~~l~~~~kr~~ 228 (258)
+.|+++++.+...+.||.
T Consensus 96 i~g~l~liG~~~ll~RR~ 113 (225)
T d1y5ic1 96 ASGVLCLIGGVLLLKRRL 113 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 10
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=6.34 E-value=3.4e+02 Score=17.49 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=0.0
Q ss_pred CChh--hHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHcCchHHHHHHHHHHH
Q 025076 1 MGMG--KWLKIGMVVGVIAIIREVSKHYGFGFDKDTGIKAIREWSDRLGVWAIPVFVGFHTL 60 (258)
Q Consensus 1 ~~m~--~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~l~~~ 60 (258)
.|++ .+.|+-+++.+......++.+. .....+.|+..+++++.-.....+..++..+
T Consensus 9 sG~~~W~~qRvSAv~l~~l~~~~~~~~~---~~~~~~y~~~~~~~~~~~~~il~~l~l~~~~ 67 (113)
T d1nekd_ 9 NGVHDFILVRATAIVLTLYIIYMVGFFA---TSGELTYEVWIGFFASAFTKVFTLLALFSIL 67 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHhChHHHHHHHHHHHHHH
Done!