BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025077
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42056|VDAC2_SOLTU Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum
tuberosum PE=1 SV=2
Length = 276
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/281 (40%), Positives = 144/281 (51%), Gaps = 58/281 (20%)
Query: 1 MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDC------------------------ 36
M PGLY DIGKKARDLLY+DY Y
Sbjct: 1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQL 60
Query: 37 ----------VDSNFDV--SCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAG 82
VD+N +V + D PGL T F ++PD SG VEL+YLH+YAG
Sbjct: 61 KNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTS 120
Query: 83 IGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF 142
IGL A +V FS VAGN ++LGTD +FD +T F+ NAGLSF+++
Sbjct: 121 IGLTA-----------SPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDL 169
Query: 143 NASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202
AS+ LNDK + + ASYY + P+T TAV AEL HSFS++ + +LT+G QH
Sbjct: 170 IASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNEN---------TLTIGTQHL 220
Query: 203 LFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
L P T VK RVN+ GK A +Q + K +SGE D RA
Sbjct: 221 LDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRA 261
>sp|P42055|VDAC1_SOLTU Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum
tuberosum PE=1 SV=2
Length = 276
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 146/296 (49%), Gaps = 62/296 (20%)
Query: 1 MSNSPGLYIDIGKKARDLLYKDY-------------------------GD---------- 25
M PGLY +IGKKARDLLYKDY GD
Sbjct: 1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60
Query: 26 --KQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTA 81
K + D +SN + D PGL T +PD SG +E++YLHDYAG
Sbjct: 61 KNKNVTTDIKVDT-NSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICT 119
Query: 82 GIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTAL 141
+GL A + IV FS V G +++LGTD +FD T F+ NAGLSF A
Sbjct: 120 SVGLTA-----------NPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNAD 168
Query: 142 FNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQH 201
AS+NLN+K +NL ASYY + PLT TAV AE+ HSFS + +I +TVG QH
Sbjct: 169 LVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENI---------ITVGTQH 219
Query: 202 GLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257
L P T VK R+N GK A +Q + K VSGE D + S +FG+A +
Sbjct: 220 RLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTK--SVDKGAKFGLALA 273
>sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1 OS=Arabidopsis
thaliana GN=VDAC1 PE=1 SV=3
Length = 276
Score = 157 bits (396), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 140/294 (47%), Gaps = 58/294 (19%)
Query: 1 MSNSPGLYIDIGKKARDLLYKDYGDKQ--------PA----------------------- 29
M PGLY +IGKKARDLLYKD+ Q PA
Sbjct: 1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60
Query: 30 --NHFRYD---CVDSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAG 82
+ D C DS F ++ D PGL + F +PD SG VEL+YLH+YAG +
Sbjct: 61 RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120
Query: 83 IGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF 142
+GL + V FS V G+ VL++GTD +FD + F+ NAGLSF
Sbjct: 121 MGLTQ-----------NPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDL 169
Query: 143 NASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202
AS+ +NDK + L ASYY + PL TAV AE+ H S+ S ++TVG QH
Sbjct: 170 IASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDS---------TITVGTQHS 220
Query: 203 LFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
L P T VK RVN+ G A +Q + K +SGE D ++ V +A
Sbjct: 221 LDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALAL 274
>sp|P46274|VDAC1_WHEAT Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1
PE=2 SV=1
Length = 275
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 140/291 (48%), Gaps = 60/291 (20%)
Query: 5 PGLYIDIGKKARDLLYKDY------------------------------GDKQPANHFRY 34
PGLY IGKKA+DLLY+DY G+ Q +
Sbjct: 4 PGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKN 63
Query: 35 DCVD------SNFDVSCQCDAIV-PGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIGL 85
VD SN + D + PGL T +PD SG VEL+YLHDYAG A IGL
Sbjct: 64 ITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGL 123
Query: 86 KAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNAS 145
A + +V S G + L++G D + D +T+ F+ YNA LS+ AS
Sbjct: 124 TA-----------NPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIAS 172
Query: 146 VNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFP 205
+NLN+K ++L ASYY +V + TAV AEL HSFS++ + SLT G QH L P
Sbjct: 173 LNLNNKGDSLTASYYH-IVEKSGTAVGAELTHSFSSNEN---------SLTFGTQHTLDP 222
Query: 206 STLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
TLVK R+N +GK A +Q F K +S E D +A V +A
Sbjct: 223 LTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIAL 273
>sp|Q9SMX3|VDAC3_ARATH Mitochondrial outer membrane protein porin 3 OS=Arabidopsis
thaliana GN=VDAC3 PE=1 SV=3
Length = 274
Score = 147 bits (371), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 136/294 (46%), Gaps = 60/294 (20%)
Query: 1 MSNSPGLYIDIGKKARDLLYKDY-GDKQ-------------------------------- 27
M PGLY +IGKKARDLLY+DY GD++
Sbjct: 1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60
Query: 28 PANHFRYDC---VDSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAG 82
N+F D DS+ + D PGL ++ +PD SG E++Y HDYAG +
Sbjct: 61 KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120
Query: 83 IGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF 142
+G A IV FS V G LSLGTD A++ + F ++NAG +F
Sbjct: 121 VGFTA-----------TPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDL 169
Query: 143 NASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202
AS+ LNDK E L ASYYQ + P T V AE+ H+F+ + ++TVG QH
Sbjct: 170 TASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKEN---------AITVGTQHA 218
Query: 203 LFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
L P T VK RVN G A +Q + K VSGE D +A V +A
Sbjct: 219 LDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALAL 272
>sp|Q6K548|VDAC1_ORYSJ Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp.
japonica GN=VDAC1 PE=1 SV=3
Length = 274
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 135/277 (48%), Gaps = 59/277 (21%)
Query: 5 PGLYIDIGKKARDLLYKDY------------------------------GDKQPANHFRY 34
PGLY +IGKKARDLLY+DY G+ Q +
Sbjct: 4 PGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKN 63
Query: 35 DCVD------SNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIGLK 86
VD SN + D + PGL + +PD SG EL+Y HDYAG +A IGL
Sbjct: 64 ITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLT 123
Query: 87 AGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASV 146
A +V S V G L++G D + D +T + YNAGLSF+ AS+
Sbjct: 124 ASP-----------VVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASL 172
Query: 147 NLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPS 206
NLN+K ++L ASYY +V + TAV AEL HSFS++ + SLT G QH L P
Sbjct: 173 NLNNKGDSLTASYYH-IVNHSATAVGAELTHSFSSNEN---------SLTFGTQHTLDPL 222
Query: 207 TLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
T+VK R N +GK A +Q + K +S E D +A
Sbjct: 223 TVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKA 259
>sp|Q7F4F8|VDAC3_ORYSJ Mitochondrial outer membrane protein porin 3 OS=Oryza sativa subsp.
japonica GN=VDAC3 PE=2 SV=1
Length = 275
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 130/279 (46%), Gaps = 59/279 (21%)
Query: 4 SPGLYIDIGKKARDLLYKDYGDKQP----------------------------ANHFRYD 35
+PGLY DIGKK RDLLY+DYG +
Sbjct: 2 APGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNK 61
Query: 36 CVDSNFDVSCQCDAIV---------PGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIG 84
+ + + + D + PGL + ++PD SG +EL+YLH+YAG A +G
Sbjct: 62 KLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVG 121
Query: 85 LKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNA 144
L + + +V S V G+ LS+G D AFD +T F+ YNA LS + A
Sbjct: 122 LNS-----------NPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIA 170
Query: 145 SVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLF 204
S++LN+ + L ASYY + + TAV AEL HSFS + S +L G QH L
Sbjct: 171 SLHLNNHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNES---------TLIFGSQHSLD 221
Query: 205 PSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
P T VK R N G A VQ + K I +SGE D +A
Sbjct: 222 PHTTVKARFNNYGMASALVQHEWRPKSLITISGEVDTKA 260
>sp|P42054|VDAC_PEA Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1
PE=1 SV=2
Length = 276
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 131/295 (44%), Gaps = 60/295 (20%)
Query: 1 MSNSPGLYIDIGKKARDLLYKDY------------------------------GD----- 25
M PGLY DIGKKARDLLYKDY GD
Sbjct: 1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQL 60
Query: 26 --KQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTA 81
K + D +SN + + PG+ +P+ SG VEL+YLH+YAG ++
Sbjct: 61 KNKNITTDIKVDT-NSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISS 119
Query: 82 GIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTAL 141
+GLKA + IV FS V G L+ G D +FD + NA ++F
Sbjct: 120 SVGLKA-----------NPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDD 168
Query: 142 FNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQH 201
S+ LN+K + L ASYY + PL+ TAV ++ H FS + + T+G QH
Sbjct: 169 LIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKEN---------TFTLGTQH 219
Query: 202 GLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
L P T VK RV +GK A +Q + K I +S E D +A + +A
Sbjct: 220 ALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLAL 274
>sp|P42057|VDAC_MAIZE Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2
SV=1
Length = 277
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 125/277 (45%), Gaps = 59/277 (21%)
Query: 6 GLYIDIGKKARDLLYKDYGDKQP--------------------------ANHFRYDCVDS 39
GLY DIGKK RDLLYKDY Q H +
Sbjct: 6 GLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKL 65
Query: 40 NFDVSCQCDAIV-----------PGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIGLK 86
DV ++ + PGL + ++PD SG +E +YLH+YAG A +GL
Sbjct: 66 TVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLN 125
Query: 87 AGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASV 146
+ + +V S G+ LS+G D +FD +T F+ YNA LS + AS+
Sbjct: 126 S-----------NPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASL 174
Query: 147 NLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPS 206
+LN+ + L ASYY + + TAV AEL HS S + S +L G QH L P
Sbjct: 175 HLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNES---------TLIFGSQHSLDPH 225
Query: 207 TLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
T +K R N G A VQ + K + +SG+ D +A
Sbjct: 226 TTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKA 262
>sp|Q0JJV1|VDAC4_ORYSJ Mitochondrial outer membrane protein porin 4 OS=Oryza sativa subsp.
japonica GN=VDAC4 PE=3 SV=3
Length = 317
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 127/276 (46%), Gaps = 59/276 (21%)
Query: 7 LYIDIGKKARDLLYKDYGDKQP---------------ANHFRYDCVDSN----------- 40
LY +IGKKARDLLYKD+ Q A+ + + + S
Sbjct: 47 LYFEIGKKARDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQTKLKSNNVM 106
Query: 41 FDVSCQCDAIV-----------PGLSTAFRSIIP--DSGGVELRYLHDYAGFTAGIGLKA 87
DV D+ V GL P +G EL+YLHDYAG + G+GL +
Sbjct: 107 LDVKATSDSQVLTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGISLGVGLTS 166
Query: 88 GRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVN 147
+V S V GN +++G D A D ST F+ Y+AGL+ N + A +
Sbjct: 167 -----------KPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLT 215
Query: 148 LNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPST 207
LN+K ++L ASYY + + TA AEL HSFS + +L+ G QH L P T
Sbjct: 216 LNNKGDSLTASYYHLVNKESGTAAGAELTHSFSTKEN---------TLSFGMQHALDPLT 266
Query: 208 LVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
VK R N +G V A +Q + K + +S E D +A
Sbjct: 267 TVKARYNNHGMVSALIQHEWRPKSFLTLSAEVDTKA 302
>sp|Q6L5I5|VDAC2_ORYSJ Mitochondrial outer membrane protein porin 2 OS=Oryza sativa subsp.
japonica GN=VDAC2 PE=2 SV=1
Length = 280
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 126/276 (45%), Gaps = 61/276 (22%)
Query: 7 LYIDIGKKARDLLYKDYGDKQP-------------------ANHFRYDCVDS-------N 40
LY DIGKKARDLLY+DY Q N + + S +
Sbjct: 12 LYSDIGKKARDLLYRDYHTDQKFTLTTYAANGAAITVAGTKKNESIFSEIQSQVKNNNVS 71
Query: 41 FDVSCQCDAIV-----------PGLSTAFRSIIP--DSGGVELRYLHDYAGFTAGIGLKA 87
DV D+ + PGL P S E++YLH +AG A +GL A
Sbjct: 72 VDVKATSDSKLITTFTVHDLGTPGLKGILSIPFPYQKSAKAEVQYLHPHAGLNAIVGLNA 131
Query: 88 GRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVN 147
+ +V FS V G ++GTD AFD +T F+ YNAGLS T A++
Sbjct: 132 -----------NPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALL 180
Query: 148 LNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPST 207
LN+K ++L ASYY ++ +AV AEL HSFS++ + +LT G QH L T
Sbjct: 181 LNNKGDSLAASYYHKVSK--TSAVGAELAHSFSSNEN---------TLTFGTQHALDELT 229
Query: 208 LVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRA 243
VK R N G A +Q F K + +S E D +A
Sbjct: 230 TVKARFNNFGMASALIQHEFRPKSLVTISTEVDTKA 265
>sp|Q9FJX3|VDAC2_ARATH Mitochondrial outer membrane protein porin 2 OS=Arabidopsis
thaliana GN=VDAC2 PE=1 SV=1
Length = 276
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 134/297 (45%), Gaps = 64/297 (21%)
Query: 1 MSNSPGLYIDIGKKARDLLYKDYGDKQP----------------------------ANHF 32
MS PGL+ DIGKKA+DLL +DY Q A +
Sbjct: 1 MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 60
Query: 33 RYDCVDSNFDVSCQCDA----------IVPGLSTAFRSIIPD--SGGVELRYLHDYAGFT 80
+Y ++ FDV D+ I+P +PD S +E++Y HD+A T
Sbjct: 61 KYK--NALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVT 118
Query: 81 AGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTA 140
A LK + ++ + G+ V+S G +A +D +++TF+ YNAG+S
Sbjct: 119 AAAALKQ-----------NPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKP 167
Query: 141 LFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQ 200
S+ L DK ++L+ASY RTA E+ FS + + ++TVG
Sbjct: 168 DACLSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTNEN---------TITVGGL 218
Query: 201 HGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257
+ + ST VK ++N +G +GA +Q + + VS E D +A P RFG++ +
Sbjct: 219 YAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEKHP--RFGLSLA 273
>sp|Q10S27|VDAC6_ORYSJ Mitochondrial outer membrane protein porin 6 OS=Oryza sativa subsp.
japonica GN=VDAC6 PE=2 SV=1
Length = 276
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 132/295 (44%), Gaps = 60/295 (20%)
Query: 1 MSNSPGLYIDIGKKARDLLYKDY------------------------------GDKQPAN 30
MS P +++IGK+A+DLLYKDY GD Q +
Sbjct: 1 MSKGPAPFLNIGKRAKDLLYKDYNFDQKFSLTTTSNSGLGLTATGVKIDELFIGDIQTQH 60
Query: 31 HFRYDCVDSNFD------VSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAG 82
VD D + D + GL T+F +PD SG ++L+YLHD+ +
Sbjct: 61 KSGKTTVDVKIDSESRVSTTVTVDEALTGLKTSFSFRVPDQKSGKLDLQYLHDHFALNST 120
Query: 83 IGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF 142
IGL + +++ + G LS G + FD ++ + + YN+G+ +N F
Sbjct: 121 IGLTS-----------TPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDF 169
Query: 143 NASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202
+A+V L DK E L+ASY VAAE+ H + T+G H
Sbjct: 170 SAAVLLADKGETLKASYIHTFNETNGATVAAEVTHKLKTKENY---------FTIGSSHA 220
Query: 203 LFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257
+ STL+K R + GKVG Q + K ++++S E D + S P+ RFG+A +
Sbjct: 221 IDSSTLLKTRFSNGGKVGVLCQHEWRPKSTVSISAEYDPKVVSS-PS-RFGVAIA 273
>sp|Q84P97|VDAC5_ORYSJ Mitochondrial outer membrane protein porin 5 OS=Oryza sativa subsp.
japonica GN=VDAC5 PE=2 SV=1
Length = 277
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 129/291 (44%), Gaps = 60/291 (20%)
Query: 5 PGLYIDIGKKARDLLYKDYGDKQP----------------------------ANHFRYDC 36
PGL+ DIGK+A+DLL KDY Q ++ ++Y
Sbjct: 6 PGLFSDIGKRAKDLLTKDYTYDQKLTVSTVSSSGVGLTSTAVKKGGLYTLDVSSVYKYKS 65
Query: 37 V--------DSNFDVSCQCDAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAGIGLK 86
+SN + ++P +PD SG VE++Y H+ A F +G+K
Sbjct: 66 TLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVGMK 125
Query: 87 AGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASV 146
+V+FS AG L+ G +A FD +T F+ Y+A + ++A++
Sbjct: 126 P-----------SPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAI 174
Query: 147 NLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPS 206
L DK + ++ S L +++V AEL S + + +LTVG + + P
Sbjct: 175 VLADKGDTVKVSGVYHLDDKQKSSVVAELTRRLSTNEN---------TLTVGGLYKVDPE 225
Query: 207 TLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257
T VK R+N GK+ A +Q K + +SGE D +A P +FG+A +
Sbjct: 226 TAVKARLNNTGKLAALLQHEVKPKSVLTISGEFDTKALDRPP--KFGLALA 274
>sp|Q9FKM2|VDAC4_ARATH Mitochondrial outer membrane protein porin 4 OS=Arabidopsis
thaliana GN=VDAC4 PE=2 SV=1
Length = 274
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 132/294 (44%), Gaps = 60/294 (20%)
Query: 1 MSNSPGLYIDIGKKARDLLYKDY--------------GDKQPANHFRYD----------- 35
M +SP + DIGKKA+DLL KDY G + A + D
Sbjct: 1 MGSSPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLY 60
Query: 36 ---------CVDSNFDVSCQC--DAIVPGLSTAFRSIIPD--SGGVELRYLHDYAGFTAG 82
+DS+ VS + ++P IPD SG ++++Y+H +A +
Sbjct: 61 KGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSS 120
Query: 83 IGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF 142
IGL ++ S G+ + LG + +FD ++ + + YNAG+ FN
Sbjct: 121 IGLNP-----------TPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGV 169
Query: 143 NASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202
+A++ L DK E+LRA+Y + P T+ AEL FSN+ + S TVG H
Sbjct: 170 SAALILEDKGESLRATYVHTVNP--TTSFGAELIRRFSNYNN---------SFTVGSSHS 218
Query: 203 LFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256
+ T+VK R + +GK G VQ+ + K I S E D +A + P + +A
Sbjct: 219 VDQFTVVKTRFSNSGKAGMVVQREWRPKSHITFSAEYDSKAVTSSPKLGLALAL 272
>sp|Q9M2W6|VDAC5_ARATH Putative mitochondrial outer membrane protein porin 5
OS=Arabidopsis thaliana GN=VDAC5 PE=5 SV=1
Length = 226
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 118/259 (45%), Gaps = 38/259 (14%)
Query: 1 MSNSPGLYIDIGKKARDLLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRS 60
MS PGL+ DIGK A+DLL +DY D F +S + V STA ++
Sbjct: 1 MSKGPGLFADIGKYAKDLLTRDY------------STDQKFSISTNSVSGVALTSTALKN 48
Query: 61 IIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSL--GTD 118
+ + V +Y + F I D VK V N +S+ T
Sbjct: 49 GVLHAANVATQYKYRNTFFDVKIDT-------------DFNVKSLVYPMNKFVSIDHNTL 95
Query: 119 AAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHS 178
+D ++RTF+ YN G+S S+ L DK ++++ASY L TR+A E+
Sbjct: 96 TGYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGDSIKASYVYYLDESTRSATVGEV--- 152
Query: 179 FSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGE 238
R IS N T++TVG + + T VK ++N+NGK GA +Q K + +SGE
Sbjct: 153 ---IRKISTN---ETTVTVGGLYAVDHLTNVKAKLNSNGKFGALLQHEGLPKSIVTISGE 206
Query: 239 TDIRASSWIPNVRFGMAFS 257
D + P R G++ S
Sbjct: 207 IDTKTLDKYP--RLGLSLS 223
>sp|O13656|TOM40_SCHPO Probable mitochondrial import receptor subunit tom40
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tom40 PE=3 SV=3
Length = 344
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 113 LSLGTDAAFDISTRTFSNYNAGLSF----NTALFNASVNLNDKLENLRASYYQELVPLTR 168
LSLG +A + + + A LS+ N A + A+ +LN ++ A+++++L P
Sbjct: 178 LSLGVEALWQKPSSSIGPEEATLSYMTRYNAADWIATAHLNGSQGDVTATFWRKLSPKVE 237
Query: 169 TAVAAELKHSFSNHRSISDNIPIPTSLT-VGFQHGLFPSTLVKVRVNTNGKVGAHVQQSF 227
V +L NH + P P LT VG ++ F ++ + +V++ G+VG ++++
Sbjct: 238 AGVECQLSPVGLNHSAALMTGPKPEGLTSVGVKYE-FAQSIYRGQVDSKGRVGVYLERRL 296
Query: 228 WQKFSIAVSGETD 240
++A S E D
Sbjct: 297 APAITLAFSSELD 309
>sp|Q9FHQ9|VDACL_ARATH Putative mitochondrial outer membrane protein porin-like
OS=Arabidopsis thaliana GN=At5g37610 PE=5 SV=1
Length = 163
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 17/157 (10%)
Query: 101 IVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYY 160
I+ FS V GN G + D+ R + N LS T + +++ K ASYY
Sbjct: 19 ILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTTTTFSIDKKASLFTASYY 78
Query: 161 QELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVK--VRVNTNGK 218
Q L ++T AE K+ S+ S ++G +H L++ + V+ G
Sbjct: 79 QRLH--SKTVCGAEAKYILSDK---------SNSFSIGKRHLFGDDDLIQALLSVSNGGS 127
Query: 219 VGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMA 255
+ Q + K ++GE + SS RFG+A
Sbjct: 128 MRVLFQHHWTLKSFFTIAGERLLNHSS----QRFGLA 160
>sp|Q9X255|PPNK_THEMA Probable inorganic polyphosphate/ATP-NAD kinase OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=ppnK PE=1 SV=1
Length = 258
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 18 LLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYA 77
+LY++ +K+ F + + +V +A PG TA ++ G L+ A
Sbjct: 5 ILYREEREKE--GEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKAA 62
Query: 78 GFTAGIGLKAGRHNHLQSVGLDRIVKF 104
T +G KAGR L S LD I +F
Sbjct: 63 DGTPMVGFKAGRLGFLTSYTLDEIDRF 89
>sp|P07329|NIFK_AZOVI Nitrogenase molybdenum-iron protein beta chain OS=Azotobacter
vinelandii GN=nifK PE=1 SV=3
Length = 523
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 135 LSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAA----ELKHSFSNHRS---ISD 187
++ + A+F N+ D L+N +A+Y +++ ++ T +A +L +N + I D
Sbjct: 118 MTEDAAVFGGQQNMKDGLQNCKATYKPDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPD 177
Query: 188 NIPIPTSLTVGF 199
P+P + T F
Sbjct: 178 EFPVPFAHTPSF 189
>sp|A5ILH3|PPNK_THEP1 Probable inorganic polyphosphate/ATP-NAD kinase OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=ppnK PE=3 SV=1
Length = 258
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 18 LLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYA 77
+LY++ +K+ F + + +V +A PG TA ++ G L+ A
Sbjct: 5 ILYREEREKE--GKFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKAA 62
Query: 78 GFTAGIGLKAGRHNHLQSVGLDRIVKF 104
T +G KAGR L S LD I +F
Sbjct: 63 DGTPMVGFKAGRLGFLTSYTLDEIDRF 89
>sp|B1LAU0|PPNK_THESQ Probable inorganic polyphosphate/ATP-NAD kinase OS=Thermotoga sp.
(strain RQ2) GN=ppnK PE=3 SV=1
Length = 258
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 18 LLYKDYGDKQPANHFRYDCVDSNFDVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYA 77
+LY++ +K+ F + + +V A PG TA ++ G L+ A
Sbjct: 5 ILYREEREKE--GKFLKEKISKEHEVIEFGKANAPGRVTADLIVVVGGDGTVLKAAKKAA 62
Query: 78 GFTAGIGLKAGRHNHLQSVGLDRIVKF 104
T +G KAGR L S LD I +F
Sbjct: 63 DGTPMVGFKAGRLGFLTSYTLDEIDRF 89
>sp|P07144|VDAC_NEUCR Mitochondrial outer membrane protein porin OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B7H23.070 PE=2 SV=1
Length = 283
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 107 VAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPL 166
+ G+ G A +D+ + Y+A + ++ ++A++ D L ASYY ++
Sbjct: 141 IVGHEGFLAGASAGYDVQKAAITGYSAAVGYHAPTYSAAITATDNLSVFSASYYHKV--- 197
Query: 167 TRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNG 217
+ V A K ++++ + + + T ++ + P + VK ++N G
Sbjct: 198 -NSQVEAGSKATWNSKTGNTVGLEVAT------KYRIDPVSFVKGKINDRG 241
>sp|Q9HL17|FDHD_THEAC Protein FdhD homolog OS=Thermoplasma acidophilum (strain ATCC 25905
/ DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=fdhD
PE=3 SV=1
Length = 282
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 51 VPGLSTAF---RSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVV 107
+ GL TA +++ +GGV L D G + GRHN +D++V ++++
Sbjct: 155 ILGLPTAMGRAQALFLKTGGVHAAALFDVQGRLHAVCEDIGRHN-----AVDKVVGYTLL 209
Query: 108 AG----NTVLSLGTDAAFDISTRTF 128
G N+VL + A F+I + F
Sbjct: 210 EGKDTDNSVLMVSGRAGFEIVEKAF 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,135,366
Number of Sequences: 539616
Number of extensions: 3857691
Number of successful extensions: 8126
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8045
Number of HSP's gapped (non-prelim): 49
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)