Query 025077
Match_columns 258
No_of_seqs 135 out of 429
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3126 Porin/voltage-dependen 100.0 1.2E-56 2.5E-61 403.3 24.4 232 3-257 2-280 (281)
2 cd07306 Porin3_VDAC Voltage-de 100.0 9.6E-53 2.1E-57 380.6 31.9 230 5-257 1-276 (276)
3 cd07303 Porin3 Eukaryotic pori 100.0 5.1E-49 1.1E-53 356.4 29.9 227 7-256 1-273 (274)
4 PF01459 Porin_3: Eukaryotic p 100.0 4E-41 8.7E-46 300.8 30.3 224 4-251 1-273 (273)
5 cd07305 Porin3_Tom40 Transloca 100.0 2.1E-40 4.5E-45 300.6 27.4 229 3-257 2-279 (279)
6 KOG3296 Translocase of outer m 99.9 1.4E-23 2.9E-28 190.8 5.7 183 50-257 117-308 (308)
7 cd07305 Porin3_Tom40 Transloca 99.2 2E-08 4.4E-13 91.3 25.3 187 42-256 25-228 (279)
8 TIGR00989 3a0801s07tom40 mitoc 98.9 3.6E-09 7.9E-14 88.6 8.6 109 3-122 2-161 (161)
9 PF01459 Porin_3: Eukaryotic p 98.8 2.1E-05 4.5E-10 70.2 27.9 142 99-255 73-224 (273)
10 cd07306 Porin3_VDAC Voltage-de 98.4 0.00095 2.1E-08 60.6 27.2 176 53-255 35-218 (276)
11 cd07303 Porin3 Eukaryotic pori 98.3 0.0014 3E-08 59.7 25.2 141 101-255 76-219 (274)
12 TIGR00989 3a0801s07tom40 mitoc 96.6 0.042 9.1E-07 46.4 11.7 49 128-178 106-161 (161)
13 PF10082 DUF2320: Uncharacteri 93.7 6.1 0.00013 36.9 20.6 46 212-257 329-380 (381)
14 KOG3296 Translocase of outer m 93.3 0.13 2.8E-06 47.6 4.9 134 112-256 106-255 (308)
15 COG2067 FadL Long-chain fatty 91.1 7.9 0.00017 37.8 14.4 107 101-211 287-399 (440)
16 PRK03761 LPS assembly outer me 87.0 32 0.00069 35.9 16.3 99 110-229 612-732 (778)
17 PRK04423 organic solvent toler 84.7 56 0.0012 34.4 17.1 94 99-202 617-720 (798)
18 PF13609 Porin_4: Gram-negativ 84.3 29 0.00063 30.7 14.3 103 128-237 183-303 (311)
19 PF10082 DUF2320: Uncharacteri 83.2 37 0.0008 31.6 13.5 67 169-245 259-325 (381)
20 PRK10716 long-chain fatty acid 79.3 63 0.0014 31.3 14.5 20 110-129 162-181 (435)
21 COG2067 FadL Long-chain fatty 78.1 53 0.0011 32.2 12.9 60 152-213 285-359 (440)
22 PRK10716 long-chain fatty acid 76.5 76 0.0017 30.7 21.5 137 101-257 288-434 (435)
23 PF11383 DUF3187: Protein of u 76.5 67 0.0014 30.0 14.8 65 192-256 237-315 (319)
24 PF03349 Toluene_X: Outer memb 75.1 74 0.0016 29.9 15.8 114 110-239 151-292 (427)
25 PF03349 Toluene_X: Outer memb 74.8 76 0.0016 29.8 19.6 134 110-257 281-426 (427)
26 TIGR03014 EpsL exopolysacchari 74.7 79 0.0017 30.0 16.4 45 212-256 329-379 (381)
27 PF11854 DUF3374: Protein of u 73.7 63 0.0014 33.1 12.7 166 65-257 448-636 (637)
28 PF06178 KdgM: Oligogalacturon 72.4 13 0.00028 32.8 6.6 79 151-238 60-156 (218)
29 PF04357 DUF490: Family of unk 69.1 48 0.001 30.6 10.0 62 153-226 314-378 (379)
30 PF05275 CopB: Copper resistan 66.4 66 0.0014 28.3 9.6 79 153-240 55-139 (210)
31 cd00342 gram_neg_porins Porins 66.1 99 0.0021 27.6 18.3 108 129-240 162-296 (329)
32 PF11383 DUF3187: Protein of u 65.9 1.2E+02 0.0025 28.4 14.0 63 153-217 238-300 (319)
33 PF12519 DUF3722: Protein of u 61.7 23 0.0005 32.3 6.0 61 112-175 191-257 (260)
34 cd00342 gram_neg_porins Porins 59.2 1.3E+02 0.0029 26.8 17.1 80 128-211 200-291 (329)
35 TIGR03016 pepcterm_hypo_1 unch 58.4 1.5E+02 0.0032 28.7 11.4 76 171-256 348-429 (431)
36 PF13609 Porin_4: Gram-negativ 57.2 1.4E+02 0.003 26.3 16.1 13 50-62 60-72 (311)
37 PRK09980 ompL outer membrane p 56.3 45 0.00098 29.8 6.9 29 151-179 70-99 (230)
38 KOG3126 Porin/voltage-dependen 55.7 1.7E+02 0.0037 27.0 20.0 155 53-230 38-200 (281)
39 PF02530 Porin_2: Porin subfam 54.6 1.9E+02 0.0042 27.4 11.4 112 111-240 237-351 (379)
40 PF04338 DUF481: Protein of un 50.4 1.5E+02 0.0032 24.7 9.5 21 221-241 167-187 (210)
41 PF14052 Caps_assemb_Wzi: Caps 48.6 1.5E+02 0.0032 28.6 9.7 42 216-257 399-442 (443)
42 TIGR03519 Bac_Flav_fam_1 Bacte 46.9 2.2E+02 0.0049 25.8 16.6 65 192-256 224-292 (292)
43 COG3203 OmpC Outer membrane pr 45.8 1.7E+02 0.0037 27.7 9.4 50 192-241 264-327 (354)
44 PF07642 DUF1597: Outer membra 44.8 2.5E+02 0.0054 25.7 11.1 85 130-216 209-315 (344)
45 TIGR03014 EpsL exopolysacchari 42.5 2.4E+02 0.0051 26.8 9.9 27 218-244 292-318 (381)
46 TIGR03509 OMP_MtrB_PioB decahe 38.8 4.4E+02 0.0096 26.9 14.4 99 155-257 538-648 (649)
47 PF05420 BCSC_C: Cellulose syn 36.6 1E+02 0.0022 29.3 6.2 45 153-206 298-342 (342)
48 PF09381 Porin_OmpG: Outer mem 35.0 94 0.002 28.6 5.5 41 216-256 254-299 (301)
49 PF14250 AbrB-like: AbrB-like 30.7 25 0.00053 25.7 0.9 26 205-230 27-56 (71)
50 PF13557 Phenol_MetA_deg: Puta 30.1 3.5E+02 0.0075 23.0 11.5 20 156-177 168-187 (248)
51 PF11751 DUF3308: Protein of u 29.9 3.9E+02 0.0086 23.6 23.6 112 131-252 140-272 (274)
52 PF03895 YadA_anchor: YadA-lik 29.6 2.2E+02 0.0047 20.5 8.1 23 192-214 39-61 (78)
53 PF04453 OstA_C: Organic solve 27.4 2.9E+02 0.0062 25.5 7.8 42 99-140 306-347 (388)
54 PF03895 YadA_anchor: YadA-lik 25.9 2.6E+02 0.0056 20.1 6.8 39 153-203 40-78 (78)
55 TIGR03016 pepcterm_hypo_1 unch 25.8 6.1E+02 0.013 24.5 10.5 57 153-211 346-402 (431)
56 PF13557 Phenol_MetA_deg: Puta 25.8 4.2E+02 0.009 22.5 16.2 23 219-241 211-233 (248)
57 PF11924 DUF3442: Protein of u 24.2 1.9E+02 0.004 26.3 5.7 39 217-256 95-133 (280)
58 TIGR01414 autotrans_barl outer 23.2 6.3E+02 0.014 23.7 11.4 86 165-254 331-425 (429)
59 PF06178 KdgM: Oligogalacturon 22.0 5.4E+02 0.012 22.5 8.1 20 156-177 26-45 (218)
60 PRK14574 hmsH outer membrane p 20.7 1E+03 0.022 25.3 11.3 108 131-241 593-718 (822)
61 PF01278 Omptin: Omptin family 20.3 6.9E+02 0.015 23.1 16.4 73 154-240 112-186 (294)
No 1
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-56 Score=403.34 Aligned_cols=232 Identities=28% Similarity=0.385 Sum_probs=212.9
Q ss_pred CCCCccccccccccccccCCCCCCCCeeE-------------------------------EEeecc----------ccce
Q 025077 3 NSPGLYIDIGKKARDLLYKDYGDKQPANH-------------------------------FRYDCV----------DSNF 41 (258)
Q Consensus 3 ~~P~~y~DlgK~arDll~k~y~~~~k~~~-------------------------------~~~~~~----------~~~l 41 (258)
|+||+|.||||.|||||+|||+|++++.. |+++++ +++|
T Consensus 2 ~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~L 81 (281)
T KOG3126|consen 2 MAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNTL 81 (281)
T ss_pred CCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCcc
Confidence 78999999999999999999999977555 443432 5559
Q ss_pred eEEEEEcc-CCCCeEEEEEEEc-cC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEeccceee
Q 025077 42 DVSCQCDA-IVPGLSTAFRSII-PD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSL 115 (258)
Q Consensus 42 ~t~i~~~~-~~~Glk~~~~~~~-p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~~l 115 (258)
.++|++++ ++||||+++++.+ |+ ++|++++|.||++++.++..+.. +|++..|+|+|+++|++
T Consensus 82 ~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~-----------~P~i~~s~v~g~~g~l~ 150 (281)
T KOG3126|consen 82 GTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTA-----------NPLILGSLVLGHEGWLL 150 (281)
T ss_pred ceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeecccccc-----------CCeEEEEEEecccceEE
Confidence 99999976 8999999998885 63 89999999999999999643344 99999999999999999
Q ss_pred eEEEEEeccCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceE
Q 025077 116 GTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSL 195 (258)
Q Consensus 116 G~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~ 195 (258)
|+|+.||++++.+++|+++++|+++|++++++++| ++++.+|+|||++++ ++++++++|..... +++|
T Consensus 151 G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~nn-~~~~~~s~yq~v~~~--~~~~~~~~~~~~~~---------~~~~ 218 (281)
T KOG3126|consen 151 GYETTFDTASGKLTKYNAALGYTTEDFTLHLNLNN-GTEFLASIYQRVNEK--LETGANAEWIAGSS---------NTRF 218 (281)
T ss_pred EEeEEEeccCCcEeeEEEEEEeecCCcEEEEEecc-cchhhhhhhhhhcch--heeeeeEEEeecCC---------ccEE
Confidence 99999999999999999999999999999999987 689999999999999 78899999998777 8999
Q ss_pred EEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEEe
Q 025077 196 TVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257 (258)
Q Consensus 196 tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l~ 257 (258)
+||+||.+|+.+++||||||+|++|++|||+|||++++++|+++|++++++.|||||+|+|+
T Consensus 219 ~igt~Y~lD~~t~VkAKVnn~g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~~ 280 (281)
T KOG3126|consen 219 TIGTKYALDPDTSVKAKVNNAGLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLALK 280 (281)
T ss_pred EEEEEeccCCCceeeeeecCCceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEeec
Confidence 99999999999999999999999999999999999999999999999998779999999997
No 2
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=100.00 E-value=9.6e-53 Score=380.62 Aligned_cols=230 Identities=27% Similarity=0.457 Sum_probs=211.7
Q ss_pred CCccccccccccccccCCCCC-CCCeeE------------------------------EEeecc--------ccceeEEE
Q 025077 5 PGLYIDIGKKARDLLYKDYGD-KQPANH------------------------------FRYDCV--------DSNFDVSC 45 (258)
Q Consensus 5 P~~y~DlgK~arDll~k~y~~-~~k~~~------------------------------~~~~~~--------~~~l~t~i 45 (258)
||+|.||||.|||||+|||+| .+++++ |+.+.. ++++.++|
T Consensus 1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v 80 (276)
T cd07306 1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEI 80 (276)
T ss_pred CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEE
Confidence 899999999999999999994 466665 332212 45589999
Q ss_pred EEccC-CCCeEEEEEEEcc-C----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEeccceeeeEEE
Q 025077 46 QCDAI-VPGLSTAFRSIIP-D----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDA 119 (258)
Q Consensus 46 ~~~~~-~~Glk~~~~~~~p-~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~~lG~e~ 119 (258)
++++. +||||+++++.+| + +++++++|+|+++++++++++.. +|.++.|+++++++|++|+|+
T Consensus 81 ~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~-----------~p~~~~s~~~g~~~~~~G~e~ 149 (276)
T cd07306 81 TIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNK-----------GPLVGASAVLGYKGFLLGAEV 149 (276)
T ss_pred EECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccC-----------CCeeEEEEEecccceEEEEEE
Confidence 99995 5999999999864 2 88999999999999999999976 899999999999999999999
Q ss_pred EEeccCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEE
Q 025077 120 AFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGF 199 (258)
Q Consensus 120 ~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ 199 (258)
.||++++++++|+++++|+.+||+++++++| ++.+++||||+|+|+ +++|+|+.|+...+ +++++||+
T Consensus 150 ~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~~kv~~~--l~~g~e~~~~~~~~---------~~~~~vg~ 217 (276)
T cd07306 150 VYDTAKSKFTKYNFALGYTNGDFELSLKLNN-GKTLRGSYFHKVSPR--LAVGAKVTWYSGTN---------ETTFAVGG 217 (276)
T ss_pred EEeccCCcEeeEEEEEEEecCCeEEEEEECC-CCEEEEEEEEEcCCC--eEEEEEEEEecCCC---------CcEEEEEE
Confidence 9999999999999999999999999999998 799999999999999 89999999998777 89999999
Q ss_pred EEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCC-CCCeeEEEEEEe
Q 025077 200 QHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS-WIPNVRFGMAFS 257 (258)
Q Consensus 200 ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~-~~hK~Gl~l~l~ 257 (258)
||++|+++++|||||++|+++++|||+|+|++++++|+++|+++++ +.||||++|+|+
T Consensus 218 ~y~l~~~~~vkakv~~~g~v~~~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~~ 276 (276)
T cd07306 218 QYALDPDALVKAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK 276 (276)
T ss_pred EEEcCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEeC
Confidence 9999999999999999999999999999999999999999999876 789999999986
No 3
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=100.00 E-value=5.1e-49 Score=356.37 Aligned_cols=227 Identities=21% Similarity=0.337 Sum_probs=203.1
Q ss_pred ccccccccccccccCCCCCCCCeeE--------------------------------EEeec----------cccceeEE
Q 025077 7 LYIDIGKKARDLLYKDYGDKQPANH--------------------------------FRYDC----------VDSNFDVS 44 (258)
Q Consensus 7 ~y~DlgK~arDll~k~y~~~~k~~~--------------------------------~~~~~----------~~~~l~t~ 44 (258)
.|+||||+|||||++||.++++|++ |+++. .+++++++
T Consensus 1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~~f~~s~~~~~~~~~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~~~ 80 (274)
T cd07303 1 TYAELGKSARDLFTKGYGGGIKLDVKTKSELEFTSSGSANTETIESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLGLE 80 (274)
T ss_pred ChhHhhhhhHHhcccCCCCCEEEEEEecCCCccEEcccccccccCCCceEEEEEEEeeeecCCCeEEEEEEEcCCcceEE
Confidence 5999999999999999998877766 11111 15668999
Q ss_pred EEEcc-CCCCeEEEEEEEc-cCCCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEeccceeeeEEEEEe
Q 025077 45 CQCDA-IVPGLSTAFRSII-PDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSLGTDAAFD 122 (258)
Q Consensus 45 i~~~~-~~~Glk~~~~~~~-p~s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~~lG~e~~yd 122 (258)
+++++ +.||+|+++++++ |.+++.++||.+||.+.+.+++++.+ ..+|++..++++|+++|++|+|+.||
T Consensus 81 ~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~--------~~gp~v~~~~~~g~~~~~~G~e~~yd 152 (274)
T cd07303 81 ITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFD--------IAGPLIRGALVLGYEGWLAGYQMVFE 152 (274)
T ss_pred EEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEee--------cCCCEEEEEEEEeecceEEEEEEEEe
Confidence 99998 6899999999996 55999999999999997777666431 04799999999999999999999999
Q ss_pred ccCCcceeEEEEEeeec--CceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEE
Q 025077 123 ISTRTFSNYNAGLSFNT--ALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQ 200 (258)
Q Consensus 123 ~~~~~~~~~~~~~~y~~--~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~k 200 (258)
+++ .+++|+++++|.+ +||+++++++| ++.+++||||||+|+ +++|+|++|+.+.+ +++++||+|
T Consensus 153 ~~~-~~~~~~~~~~y~~~y~d~~~s~~l~~-~~~l~~Sy~hkvs~~--~~~g~e~~~~~~~~---------e~~~~vG~~ 219 (274)
T cd07303 153 TVS-RVTQSNFAVGYKTDYNEFQAHTNVND-GTEFGGSIYHKVNDK--LEVGVNLAATAGNS---------NTRFGIAAK 219 (274)
T ss_pred ccc-cccccceEEEEEccCCCeEEEEEEcC-CCeEEEEEEEEcCCc--eEEEEEEEeeccCC---------ccEEEEEEE
Confidence 987 5789999999999 99999999987 789999999999999 89999999998777 999999999
Q ss_pred EeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEE
Q 025077 201 HGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256 (258)
Q Consensus 201 y~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l 256 (258)
|++|+++++||||||+|+|+++|||+|+|+++|++|+++|++ ++.||||+||+|
T Consensus 220 y~l~~~~~vkakids~g~v~~~~~~~l~~~~~ltls~~~D~~--~~~~KfG~gl~~ 273 (274)
T cd07303 220 YQVDPDACFSASVNNSSLVGLGYTQTLKPGIKLTLSALLDHK--AGGHKLGLGLEF 273 (274)
T ss_pred EecCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEecCC--CCCeeEEEEEEe
Confidence 999999999999999999999999999999999999999996 678999999987
No 4
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=100.00 E-value=4e-41 Score=300.83 Aligned_cols=224 Identities=30% Similarity=0.447 Sum_probs=194.8
Q ss_pred CCCccccccccccccccCCCCCC-CCeeE-------------------------------EEee------ccccceeEEE
Q 025077 4 SPGLYIDIGKKARDLLYKDYGDK-QPANH-------------------------------FRYD------CVDSNFDVSC 45 (258)
Q Consensus 4 ~P~~y~DlgK~arDll~k~y~~~-~k~~~-------------------------------~~~~------~~~~~l~t~i 45 (258)
+||.|.||+|+|||||.+||+|+ .+|.+ |... +.++.+.+++
T Consensus 1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (273)
T PF01459_consen 1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYKGPKLTVKGDTDNDGNLEA 80 (273)
T ss_dssp -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEECEEEEEEEETTTEEEEEE
T ss_pred CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEeCceeeEEEEeCCcccEEE
Confidence 69999999999999999999988 56555 1110 1155578888
Q ss_pred EEcc-CCCCeEEEEEEEc-cC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEecc-ceeeeEE
Q 025077 46 QCDA-IVPGLSTAFRSII-PD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNT-VLSLGTD 118 (258)
Q Consensus 46 ~~~~-~~~Glk~~~~~~~-p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~-~~~lG~e 118 (258)
++.+ +.|||++++.+++ |+ ..+++++|+++.+++.+.+++. .+|++..|.+.+.. +|++|+|
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~-----------~~~~~~~s~~~~v~~~~~lG~e 149 (273)
T PF01459_consen 81 SVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDND-----------NNPIFNASYVQSVTPNLALGAE 149 (273)
T ss_dssp EEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEES-----------TS-EEEEEEEEEET-TEEEEEE
T ss_pred EEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEccc-----------CCCcEEEEEEEeccccEEEEEE
Confidence 8888 7999999999985 44 4568888999988888888873 38999999999866 9999999
Q ss_pred EEEeccCCcceeEEEEEeeecC----ceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCce
Q 025077 119 AAFDISTRTFSNYNAGLSFNTA----LFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTS 194 (258)
Q Consensus 119 ~~yd~~~~~~~~~~~~~~y~~~----d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~ 194 (258)
+.||.+.+.+.+|+++++|..+ +|++++++.++++.+.+|||||++++ +++|+|+.|+...+ ++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~--~~~g~e~~~~~~~~---------~~~ 218 (273)
T PF01459_consen 150 ATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDK--LQLGAELTYNLSSR---------EST 218 (273)
T ss_dssp EEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTT--EEEEEEEEEETTCC---------EEE
T ss_pred EEEecccCCcCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccc--eeeeeeeeecccCC---------Cce
Confidence 9999999999999999999999 99999999766899999999999999 89999999999888 899
Q ss_pred EEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeE
Q 025077 195 LTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVR 251 (258)
Q Consensus 195 ~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~G 251 (258)
++||+||.+++.+++|||||++|.|+++||++|+|+++|++|+++|+++. .||||
T Consensus 219 ~~vG~~~~l~~~~~vk~kvds~g~v~~~~~~~l~~~~~l~ls~~~d~~~~--~~KfG 273 (273)
T PF01459_consen 219 FTVGYQYKLDDSSTVKAKVDSNGRVSASYEQKLNPGVTLTLSAELDHKNN--NHKFG 273 (273)
T ss_dssp EEEEEEEEECTTEEEEEEEETTSEEEEEEEEEECTTEEEEEEEEECTT-C---EEEE
T ss_pred EEEEEEEEcCcccEEEEEEcCCCEEEEEEEEecCCCcEEEEEEEEccCCC--CCCcC
Confidence 99999999998889999999999999999999999999999999999765 79998
No 5
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=100.00 E-value=2.1e-40 Score=300.57 Aligned_cols=229 Identities=19% Similarity=0.266 Sum_probs=206.0
Q ss_pred CCCCccccccccccccccCCCCCCCCeeE------------------------------EEeec--c--------cccee
Q 025077 3 NSPGLYIDIGKKARDLLYKDYGDKQPANH------------------------------FRYDC--V--------DSNFD 42 (258)
Q Consensus 3 ~~P~~y~DlgK~arDll~k~y~~~~k~~~------------------------------~~~~~--~--------~~~l~ 42 (258)
-+|+.|+||.|++|||+..+|..+.++.+ |..++ . +.+++
T Consensus 2 ~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g~l~ 81 (279)
T cd07305 2 PNPGTFEELHREVKEVFPLDFFDGFRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDGNLN 81 (279)
T ss_pred cCCccHHHHHHHHHHhcCccccccEEEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCCcee
Confidence 37999999999999999999976666555 22222 1 44466
Q ss_pred EEEEEccCCCCeEEEEEEEccCCCeeEEEEeeeceeeeEEeeecccccccccccccCC-eEEEEEEEe-------cccee
Q 025077 43 VSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDR-IVKFSVVAG-------NTVLS 114 (258)
Q Consensus 43 t~i~~~~~~~Glk~~~~~~~p~s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P-~v~~s~v~g-------~~~~~ 114 (258)
+.+... +.|.+++++.+++|+.++.+.|+.+||.+.+.++.++. .|| +++.+++++ +++|.
T Consensus 82 ~~~~~~-~~~~~~~k~~~~~~~~~~~~~q~~~dy~g~d~t~~l~~----------~n~~~~~~sg~~~~~ylq~vt~~l~ 150 (279)
T cd07305 82 ARIIHQ-LGDRLRSKLQAQLQDSKFNMSQLELDYRGDDFTASLKL----------ANPDILNETGIYVASYLQSVTPKLA 150 (279)
T ss_pred EEEEec-cCcceEEEEEEEecCCCceeEEEEEEEcCCceEEEEEE----------eCCCcccccEEEEEEEEEEccCcEE
Confidence 677644 88999999999998888999999999999999999996 599 889999998 99999
Q ss_pred eeEEEEEec-cCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCc
Q 025077 115 LGTDAAFDI-STRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPT 193 (258)
Q Consensus 115 lG~e~~yd~-~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~ 193 (258)
+|+|+.|++ +.+++++++++++|+.+||+++++++++ +.+.+|||||++|+ +++|+|+.|++..+ ++
T Consensus 151 lG~E~~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~~-~~l~asY~~kvs~~--l~lG~el~~~~~~~---------es 218 (279)
T cd07305 151 LGGELVYQRVPGNGISVLSYAARYTAGNWIASGQLGAQ-GGLHLSYYRKLSDK--LQLGVELELNLRTR---------ES 218 (279)
T ss_pred EEEEEEEEEcCCCCceeEEEEEEEccCCEEEEEEEcCC-CeEEEEEEEEcccc--eEeeeeeeecccCC---------ce
Confidence 999999997 7899999999999999999999999985 79999999999999 89999999999877 99
Q ss_pred eEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEEe
Q 025077 194 SLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257 (258)
Q Consensus 194 ~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l~ 257 (258)
.+++|+||.++ ++.+||+||++|+|+++||++|+|++++++|+++|++ ++.||||+||+|+
T Consensus 219 ~~tvg~~y~~~-~~~~k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~--~~~~kfG~gl~i~ 279 (279)
T cd07305 219 TATLGYQYDFR-QSRFRGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHV--KNDYKFGFGLTIG 279 (279)
T ss_pred eEEEEEEEEcC-CCEEEEEEcCCCEEEEEEEEecCCCeEEEEEEEEccc--CCcceEEEEEEeC
Confidence 99999999996 9999999999999999999999999999999999995 4689999999984
No 6
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-23 Score=190.79 Aligned_cols=183 Identities=20% Similarity=0.229 Sum_probs=160.0
Q ss_pred CCCCeEEEEEEEccCCCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEe-------ccceeeeEEEEEe
Q 025077 50 IVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAG-------NTVLSLGTDAAFD 122 (258)
Q Consensus 50 ~~~Glk~~~~~~~p~s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g-------~~~~~lG~e~~yd 122 (258)
+.++|+.++..++.+++.++.|+..++++.+.+..+.. +||-+..|+++. ++.|+||+|+.|.
T Consensus 117 l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~----------~n~~~~~sgi~v~~~lqsvT~~LsLG~El~~~ 186 (308)
T KOG3296|consen 117 LTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPL----------GNPDLGESGIYVASYLQSVTPRLSLGGELLYQ 186 (308)
T ss_pred cchhhHHHHHHHhcchhhhccccccceecccccccccc----------cCcccccchHHHHHHHhhhcccccccceeEec
Confidence 57888888888888888999999999999999999887 699766788754 9999999999999
Q ss_pred c-cCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEE
Q 025077 123 I-STRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQH 201 (258)
Q Consensus 123 ~-~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky 201 (258)
. +.......+.+.+|...+|++++++.- ..++++||||+.++ ++.|+|+.++..-+ ++..+++++|
T Consensus 187 ~~~~~~~s~ls~a~RY~~~~~~~~~t~g~--~g~~~~y~~r~~~~--~~~~ve~~~~~~~~---------~~~~t~a~~~ 253 (308)
T KOG3296|consen 187 RRPGPEESGLSYAGRYEHSNWDATVTLGQ--QGLTGTYYQRAVEK--LQMGVEFETNTRLQ---------STDVTAAYGY 253 (308)
T ss_pred cCCCccccceeeeeeeeecceeeEEeccc--ccceehhhhhhhhh--hccceeEeeecccC---------CcceEEEEEe
Confidence 8 556666778888999999999999985 47999999999999 88999999998766 6777777777
Q ss_pred eeC-CCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEEe
Q 025077 202 GLF-PSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAFS 257 (258)
Q Consensus 202 ~ld-~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l~ 257 (258)
++. +++.+|++||++|.||+.+|++|.+.+++.+|+++||. +..+|||++|.+.
T Consensus 254 ~l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh~--k~~~~~G~gl~~~ 308 (308)
T KOG3296|consen 254 DLPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNHV--KNDFKFGFGLTIG 308 (308)
T ss_pred eccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeeccc--ccccccceeEEeC
Confidence 764 35999999999999999999999888999999999994 4579999999874
No 7
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=99.19 E-value=2e-08 Score=91.25 Aligned_cols=187 Identities=16% Similarity=0.172 Sum_probs=128.0
Q ss_pred eEEEEEcc-CCCCeEEEEEEEccC-----CCeeEEEEeeec--eeeeEEeeecccccccccccccCCeEEEEEEEeccce
Q 025077 42 DVSCQCDA-IVPGLSTAFRSIIPD-----SGGVELRYLHDY--AGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVL 113 (258)
Q Consensus 42 ~t~i~~~~-~~~Glk~~~~~~~p~-----s~k~~~qy~~~~--~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~ 113 (258)
+.++++.- +.|.+.+.-++.+.. +-.+..+|..+. .-+.+.++-. -+.++-+-+. |
T Consensus 25 G~r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~---------------g~l~~~~~~~-~ 88 (279)
T cd07305 25 GFRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDND---------------GNLNARIIHQ-L 88 (279)
T ss_pred cEEEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCC---------------CceeEEEEec-c
Confidence 44555553 567766666555422 346777777776 4444444321 1222222211 2
Q ss_pred --eeeEEEEEeccCCcceeEEEEEeeecCceEEEEEEcccc-----CeEEEEEEEEeCCCcceeEEEEEEEee--cCCcc
Q 025077 114 --SLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKL-----ENLRASYYQELVPLTRTAVAAELKHSF--SNHRS 184 (258)
Q Consensus 114 --~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~-----~~~~aS~~~kv~~~~~~~vgae~~~~~--~~~~~ 184 (258)
.+-..+..+.+......+.+.+-|..+||++++++.+.. ..+.++|.|+|+|+ +++|+|+.|.. ...
T Consensus 89 ~~~~~~k~~~~~~~~~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~--l~lG~E~~~~~~~~~~-- 164 (279)
T cd07305 89 GDRLRSKLQAQLQDSKFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPK--LALGGELVYQRVPGNG-- 164 (279)
T ss_pred CcceEEEEEEEecCCCceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCc--EEEEEEEEEEEcCCCC--
Confidence 344455555566677889999999999999999976542 68999999999999 89999999984 444
Q ss_pred cCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEE
Q 025077 185 ISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256 (258)
Q Consensus 185 ~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l 256 (258)
.+.+.+|++|.- ++.+..+++++.+.+.+.|-|++.|++.++...+.+...-+....+|....+
T Consensus 165 -------~~~~~~~~rY~~-~d~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~ 228 (279)
T cd07305 165 -------ISVLSYAARYTA-GNWIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF 228 (279)
T ss_pred -------ceeEEEEEEEcc-CCEEEEEEEcCCCeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEc
Confidence 789999999996 6788899999999999999999999755544444443222234555554443
No 8
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=98.94 E-value=3.6e-09 Score=88.60 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=83.5
Q ss_pred CCCCccccccccc-cccccCCCCCC-CCeeE-------------------------EEee------------cc--ccce
Q 025077 3 NSPGLYIDIGKKA-RDLLYKDYGDK-QPANH-------------------------FRYD------------CV--DSNF 41 (258)
Q Consensus 3 ~~P~~y~DlgK~a-rDll~k~y~~~-~k~~~-------------------------~~~~------------~~--~~~l 41 (258)
-+|++|++|.|++ ||++-+.|.|+ .++.+ |... ++ +.++
T Consensus 2 ~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p~Y~FgA~y~~~~~~l~G~id~dG~l 81 (161)
T TIGR00989 2 SNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPPYAFSALFGTNQLFAQGNLDNDGAV 81 (161)
T ss_pred cCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCCCceeeeEecCCcEEEEEEeCCCCCE
Confidence 3799999999999 99999999886 22222 2211 01 3334
Q ss_pred eEEEEEccCCCCeEEEEEEEccCCCeeEEEEeeeceeeeEEeeecccccccccccccCC-eEEE--EEEEe-------cc
Q 025077 42 DVSCQCDAIVPGLSTAFRSIIPDSGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDR-IVKF--SVVAG-------NT 111 (258)
Q Consensus 42 ~t~i~~~~~~~Glk~~~~~~~p~s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P-~v~~--s~v~g-------~~ 111 (258)
++.+.. ++.+.+.+++.+++.++....+|.++||.+-++++.+++ .|| +++. +++++ +|
T Consensus 82 ~ar~~~-~~~~~~~~K~~~Q~~~~~~~~~Q~e~DY~G~Dft~~lk~----------~Np~~~~~~~sGi~v~sylQsVTp 150 (161)
T TIGR00989 82 STRLNY-RWGDRTISKVQFQISGGQPDMCQFEHDHLGDDFSASLKA----------INPSFLEKGLTGIFVGSYLQSVTP 150 (161)
T ss_pred EEEEEE-eeCcceeEEEEEEecCCCCceEEEEEEecCCeEEEEEEE----------cCcccccccceEEEEEeeeehhCc
Confidence 444433 478999999999986655699999999999999999998 699 4454 78855 99
Q ss_pred ceeeeEEEEEe
Q 025077 112 VLSLGTDAAFD 122 (258)
Q Consensus 112 ~~~lG~e~~yd 122 (258)
+|+||+|+.|+
T Consensus 151 ~LaLG~E~~yq 161 (161)
T TIGR00989 151 RLGLGLEALWQ 161 (161)
T ss_pred ceeeeeeeEeC
Confidence 99999999985
No 9
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=98.78 E-value=2.1e-05 Score=70.16 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=100.4
Q ss_pred CCeEEEEEEEe---ccceeeeEEEEEeccCCcceeEEEEEeeecCceEEEEEEcc-ccCeEEEEEEEEeCCCcceeEEEE
Q 025077 99 DRIVKFSVVAG---NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLND-KLENLRASYYQELVPLTRTAVAAE 174 (258)
Q Consensus 99 ~P~v~~s~v~g---~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~-~~~~~~aS~~~kv~~~~~~~vgae 174 (258)
.+....++-+- .++|.+-.++.+.. ......+.+.+.|..++|.+.+.+.+ ....+.+||.|.+.|+ +.+|+|
T Consensus 73 d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~--~~lG~e 149 (273)
T PF01459_consen 73 DNDGNLEASVRNKLSPGLKLKLSAQLSP-GSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPN--LALGAE 149 (273)
T ss_dssp TTEEEEEEEEESSTTTTEEEEEEEEE-T-TTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-T--EEEEEE
T ss_pred CCcccEEEEEecccCcceEEEEEEEEee-cCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEecccc--EEEEEE
Confidence 55555555443 46655555555432 33236788899999999999999985 1368999999999999 899999
Q ss_pred EEEeecCCcccCCCCCCCce-----EEEEEEEeeCCCCeEEEEE-cCCceEEEEEEEEeccceEEEEEEeeeccCCCCCC
Q 025077 175 LKHSFSNHRSISDNIPIPTS-----LTVGFQHGLFPSTLVKVRV-NTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIP 248 (258)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~-----~tiG~ky~ld~~s~~Kakv-ns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~h 248 (258)
+.|+...+ +.. +..+.+|. .++.++-+++ ++.+.+.+.|.|++.|.+.++...+.+... ...
T Consensus 150 ~~~~~~~~---------~~~~~~~~~~~~~~Y~-~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~--~~~ 217 (273)
T PF01459_consen 150 ATYDLSSG---------KSSKYNAGLSYAARYT-HPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSS--RES 217 (273)
T ss_dssp EEEETTTT---------CEEEEEEEEEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTC--CEE
T ss_pred EEEecccC---------CcCcceEEEEEecccc-ceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccC--CCc
Confidence 99988765 332 55666666 4689999999 789999999999999998888888887632 234
Q ss_pred eeEEEEE
Q 025077 249 NVRFGMA 255 (258)
Q Consensus 249 K~Gl~l~ 255 (258)
.+.+|..
T Consensus 218 ~~~vG~~ 224 (273)
T PF01459_consen 218 TFTVGYQ 224 (273)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 5555543
No 10
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=98.38 E-value=0.00095 Score=60.57 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=118.5
Q ss_pred CeEEEEEEE-ccC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEE--eccceeeeEEEEEeccC
Q 025077 53 GLSTAFRSI-IPD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVA--GNTVLSLGTDAAFDIST 125 (258)
Q Consensus 53 Glk~~~~~~-~p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~--g~~~~~lG~e~~yd~~~ 125 (258)
|+.++.... .|+ ++.++..|+.. +++.+..... .|.+...-.+- ..+++-+-.+..|++..
T Consensus 35 gv~~~~~g~~~~~~~~~~g~~e~k~~~~--~~t~~~k~~t----------~n~l~t~v~~~~~~~~glk~~~~~~~~p~~ 102 (276)
T cd07306 35 GVEFTSTGSKKPDTGKVSGSLEAKYKIK--GLTLTQKWNT----------DNVLLTEITIEDLLAPGLKLTLDTTFPPNT 102 (276)
T ss_pred CeEEEEEEEeCCCCceEEEEEEEEEEeC--CEEEEEEEeC----------CCceeEEEEECcccCCcceEEEEEEECCCC
Confidence 777777554 565 45566666666 4444444433 13322211111 13788888888887653
Q ss_pred CcceeEEEEEeeecCceEEEEEEccc-cCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeC
Q 025077 126 RTFSNYNAGLSFNTALFNASVNLNDK-LENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLF 204 (258)
Q Consensus 126 ~~~~~~~~~~~y~~~d~~~s~~l~~~-~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld 204 (258)
.. ....+.++|..+.+.+.+.+.-. .-.+.+|..... +. +.+|+|+.|+...+. -+...+|++|. .
T Consensus 103 ~~-~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~-~~--~~~G~e~~yd~~~~~--------~~~~~~~~~Y~-~ 169 (276)
T cd07306 103 GK-KSGKLKAGYKHDPININADVDLNKGPLVGASAVLGY-KG--FLLGAEVVYDTAKSK--------FTKYNFALGYT-N 169 (276)
T ss_pred CC-ceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecc-cc--eEEEEEEEEeccCCc--------EeeEEEEEEEe-c
Confidence 33 23556779999988887776543 467888887776 66 789999999887541 56788999998 4
Q ss_pred CCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEE
Q 025077 205 PSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMA 255 (258)
Q Consensus 205 ~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~ 255 (258)
++.++-+++++.+.+.+.|-|++.|++ .+++|+....-++...+++|..
T Consensus 170 ~d~~~s~~l~~~~~l~~S~~~kv~~~l--~~g~e~~~~~~~~~~~~~vg~~ 218 (276)
T cd07306 170 GDFELSLKLNNGKTLRGSYFHKVSPRL--AVGAKVTWYSGTNETTFAVGGQ 218 (276)
T ss_pred CCeEEEEEECCCCEEEEEEEEEcCCCe--EEEEEEEEecCCCCcEEEEEEE
Confidence 788999999998999999999999974 4455555432233466666544
No 11
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=98.25 E-value=0.0014 Score=59.69 Aligned_cols=141 Identities=10% Similarity=0.079 Sum_probs=96.1
Q ss_pred eEEEEEEEe---ccceeeeEEEEEeccCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEE
Q 025077 101 IVKFSVVAG---NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKH 177 (258)
Q Consensus 101 ~v~~s~v~g---~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~ 177 (258)
.+..++.+- .+++-+=.++.++... ......+-..|..+++.+.+.+.+. .-+-.++.+.+.++ +.+|+|+.|
T Consensus 76 ~~~~~~~~~~~~~~glk~~~~~~~~~~~-~~~~~q~~~~y~~~~~~~~l~~~~~-gp~v~~~~~~g~~~--~~~G~e~~y 151 (274)
T cd07303 76 TLGLEITVEDQLSRGLKSTFDSSFSPNT-GKKNAKIKTGYKRINLGCDVDFDIA-GPLIRGALVLGYEG--WLAGYQMVF 151 (274)
T ss_pred cceEEEEEecccCCCeEEEEEEEECCCC-ccEEEEEeccEEcCCeeEEEEeecC-CCEEEEEEEEeecc--eEEEEEEEE
Confidence 444444432 4788888888886423 3344556668999999999999754 46778888999999 899999999
Q ss_pred eecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEE
Q 025077 178 SFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMA 255 (258)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~ 255 (258)
+.... +....+.+|+.-.. ++...-+++++-+.+.+.|-|++.|++.+++-.+.+.+ .....+.+|..
T Consensus 152 d~~~~-------~~~~~~~~~y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~--~~e~~~~vG~~ 219 (274)
T cd07303 152 ETVSR-------VTQSNFAVGYKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAG--NSNTRFGIAAK 219 (274)
T ss_pred ecccc-------ccccceEEEEEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeecc--CCccEEEEEEE
Confidence 87432 01334444432222 45566788888899999999999998777766666643 23355555543
No 12
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=96.64 E-value=0.042 Score=46.36 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=39.5
Q ss_pred ceeEEEEEeeecCceEEEEEEcccc-------CeEEEEEEEEeCCCcceeEEEEEEEe
Q 025077 128 FSNYNAGLSFNTALFNASVNLNDKL-------ENLRASYYQELVPLTRTAVAAELKHS 178 (258)
Q Consensus 128 ~~~~~~~~~y~~~d~~~s~~l~~~~-------~~~~aS~~~kv~~~~~~~vgae~~~~ 178 (258)
....-+-.-|+.+||++++++.|.. ..+.+||.|.|.|+ +++|+|+-|.
T Consensus 106 ~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQsVTp~--LaLG~E~~yq 161 (161)
T TIGR00989 106 PDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQSVTPR--LGLGLEALWQ 161 (161)
T ss_pred CceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeehhCcc--eeeeeeeEeC
Confidence 3444445679999999999988622 26799999999999 8999999883
No 13
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=93.67 E-value=6.1 Score=36.87 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=33.1
Q ss_pred EEcCCceEEEEEEEEeccceEEEEEEeeeccCCC------CCCeeEEEEEEe
Q 025077 212 RVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS------WIPNVRFGMAFS 257 (258)
Q Consensus 212 kvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~------~~hK~Gl~l~l~ 257 (258)
+-|+...+++.++.++++.+.+.++.....++-+ ..+.++|++.++
T Consensus 329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~ 380 (381)
T PF10082_consen 329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ 380 (381)
T ss_pred ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence 6677777888888888888777777766654322 348899988874
No 14
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=0.13 Score=47.63 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=91.9
Q ss_pred ceeeeEEEEEec------------cCCcceeEEEEEeeecCceEEEEEEccc----cCeEEEEEEEEeCCCcceeEEEEE
Q 025077 112 VLSLGTDAAFDI------------STRTFSNYNAGLSFNTALFNASVNLNDK----LENLRASYYQELVPLTRTAVAAEL 175 (258)
Q Consensus 112 ~~~lG~e~~yd~------------~~~~~~~~~~~~~y~~~d~~~s~~l~~~----~~~~~aS~~~kv~~~~~~~vgae~ 175 (258)
.-.+.+++.++. +.+++..+.....|...|+++++.+.+- -..+.++|-|.+.|+ ++.|+|+
T Consensus 106 ~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~--LsLG~El 183 (308)
T KOG3296|consen 106 DGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR--LSLGGEL 183 (308)
T ss_pred CCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhccc--cccccee
Confidence 345666776653 3455556777778889999988887631 135778999999999 7889999
Q ss_pred EEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEE
Q 025077 176 KHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMA 255 (258)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~ 255 (258)
-|.-..+ +.+..++..++|.. .....-+-+.-.|..+..| +++.+++...+..+.|..--+...-++.++.
T Consensus 184 ~~~~~~~-------~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~~~y~-~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~ 254 (308)
T KOG3296|consen 184 LYQRRPG-------PEESGLSYAGRYEH-SNWDATVTLGQQGLTGTYY-QRAVEKLQMGVEFETNTRLQSTDVTAAYGYD 254 (308)
T ss_pred EeccCCC-------ccccceeeeeeeee-cceeeEEecccccceehhh-hhhhhhhccceeEeeecccCCcceEEEEEee
Confidence 9976222 23788999999996 3444455555666666666 6666788888887777642223455555555
Q ss_pred E
Q 025077 256 F 256 (258)
Q Consensus 256 l 256 (258)
|
T Consensus 255 l 255 (308)
T KOG3296|consen 255 L 255 (308)
T ss_pred c
Confidence 4
No 15
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=91.14 E-value=7.9 Score=37.84 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=64.7
Q ss_pred eEEEEEEEe-ccceeeeEEEEEeccCCcceeEEEEEeeecCceEEEEE-EccccCeEEEEEEEEeCCCcceeEEEEEEEe
Q 025077 101 IVKFSVVAG-NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFNASVN-LNDKLENLRASYYQELVPLTRTAVAAELKHS 178 (258)
Q Consensus 101 ~v~~s~v~g-~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~-l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~ 178 (258)
.++.++... .++|++.+.+.|- .=+++.+..+........+.-... ..| .-.+....=|+++|++.+ .+-+.|+
T Consensus 287 ~~el~~~~~~~d~w~~~~s~~wT-~WS~f~~l~~~~~~~~~~~~~~~~~yrD-~wt~a~G~~Y~~nd~~tl--ragiayD 362 (440)
T COG2067 287 SAELSGQHKVADQWAIHGSVKWT-DWSSFDKLDFVFTFGKTLFAKTEDGYRD-TWTVALGTTYKFNDQWTL--RAGIAYD 362 (440)
T ss_pred EEEEeeeeccCCCeEEEEEEEEe-eccCCceEEEEEcCCCcccccccccccc-ccEEeeeceeEcCccceE--eeeeeec
Confidence 344444433 7889999998883 234565666544422233333333 454 467888889999999554 4456676
Q ss_pred ecCCcccC--CC--CCCCceEEEEEEEeeCCCCeEEE
Q 025077 179 FSNHRSIS--DN--IPIPTSLTVGFQHGLFPSTLVKV 211 (258)
Q Consensus 179 ~~~~~~~~--~~--~~~~~~~tiG~ky~ld~~s~~Ka 211 (258)
-+...... .. ++....+++|+.|.++++..+++
T Consensus 363 ~s~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~ 399 (440)
T COG2067 363 QSPSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA 399 (440)
T ss_pred CCCCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence 54321011 11 22356899999999999888875
No 16
>PRK03761 LPS assembly outer membrane complex protein LptD; Provisional
Probab=86.98 E-value=32 Score=35.88 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=69.2
Q ss_pred ccceeeeEEEEEeccCCcceeEEEEEeeecCce-EEEEEE---------------------ccccCeEEEEEEEEeCCCc
Q 025077 110 NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF-NASVNL---------------------NDKLENLRASYYQELVPLT 167 (258)
Q Consensus 110 ~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~-~~s~~l---------------------~~~~~~~~aS~~~kv~~~~ 167 (258)
.+.|.+.+++.||....++.+.++++.|..... .+.+.. ....+.+.+|...+++++
T Consensus 612 ~~~~~~~~~~~~d~~~~~~~r~~~~l~y~~~~~~~~~~~Yry~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~- 690 (778)
T PRK03761 612 SDRWGLRGGIQYDTRLDSVALANSSLEYRRDEDRLIQLNYRYASPEYIQATLPSYYSAEIYQQGISQVGAVASWPIADR- 690 (778)
T ss_pred cCCEEEeeeEEECCCCChhheEEEEEEEeCCCCcEEEeEeEEecchhhhcccccccccccccCCcceeeEEEEEEecCc-
Confidence 688999999999999999999999999986665 322221 001135677888888888
Q ss_pred ceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEecc
Q 025077 168 RTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQ 229 (258)
Q Consensus 168 ~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p 229 (258)
|.+.+...|++..+. .....+|.+|+ +-=|.+.++|++.+.+
T Consensus 691 -w~~~g~~~ydl~~~~--------~~~~~~Gl~Y~-----------~~Cw~~~~~~~r~~~~ 732 (778)
T PRK03761 691 -WSIVGAYYYDTKANK--------PAEQLLGLQYN-----------SCCWAIGVGYERKLTG 732 (778)
T ss_pred -EEEEEEEEeeCcCCh--------hhhhhcCeeec-----------CceEEEEEEEEEEecc
Confidence 777888888886652 34557777776 2234566667776654
No 17
>PRK04423 organic solvent tolerance protein; Provisional
Probab=84.69 E-value=56 Score=34.36 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=63.6
Q ss_pred CCeEEEEEEEeccceeeeEEEEEeccCCcceeEEEEEeeecC-ceEEEEEEc---------cccCeEEEEEEEEeCCCcc
Q 025077 99 DRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTA-LFNASVNLN---------DKLENLRASYYQELVPLTR 168 (258)
Q Consensus 99 ~P~v~~s~v~g~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~-d~~~s~~l~---------~~~~~~~aS~~~kv~~~~~ 168 (258)
++++-...+--.+.|.+.+++.||...+.+.+.+++++|... ...+.+... +..+.+.+|.-.+++++
T Consensus 617 SD~v~~~~~~~~~~~~l~~~~~~d~~~~r~~~~~~~~~y~~~~~~~~nl~Yry~~~~~~~~~~~eq~~~s~~~pi~~~-- 694 (798)
T PRK04423 617 SAWVADANYMINDRWTLGATYQWNPNSRREDLASLRTRYLLPNDGIINLAYRYRRNLIDNSDQLKQADFSFLYPINPR-- 694 (798)
T ss_pred cceEEEEEEEecCcEEEEeEEEECCccCcceeEEEEEEEcCCCCcEEEEEEEEecccccccCChhheeEEEEEEecCC--
Confidence 444433333337889999999999988888888888888643 333333321 11246788888889998
Q ss_pred eeEEEEEEEeecCCcccCCCCCCCceEEEEEEEe
Q 025077 169 TAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202 (258)
Q Consensus 169 ~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ 202 (258)
|.+.+...|++..+. .....+|.+|+
T Consensus 695 W~~~g~~~ydl~~~~--------~~e~~~GleY~ 720 (798)
T PRK04423 695 WSAVGRYYYSLLDKK--------PLEIIGGVQWD 720 (798)
T ss_pred EEEEEEEEEeCcCCc--------chhhhcCcEEc
Confidence 778888888886552 34456677776
No 18
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=84.28 E-value=29 Score=30.73 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=54.0
Q ss_pred ceeEEEEEeeecC--ceEEEEEEcc------ccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEE
Q 025077 128 FSNYNAGLSFNTA--LFNASVNLND------KLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGF 199 (258)
Q Consensus 128 ~~~~~~~~~y~~~--d~~~s~~l~~------~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ 199 (258)
...|.+++.|... .+.+++.... ..+.+..+--..+ .. +.++++....-.... ........+.+++
T Consensus 183 ~~~~~~~~~Y~~~~~~~~~~~~y~~~~~~~~~~~~~~~ga~y~~-~~--~~l~a~y~~~~~~~~---~~~~~~~~~~~~~ 256 (311)
T PF13609_consen 183 DDVYGAGASYSFGGFGLTVAAGYSSADDNGGDNDAWGVGASYNF-GG--FTLGAEYGQADNDGS---GGDSDQDAYYVGA 256 (311)
T ss_dssp TEEEEEEEEEEET-SSEEEEEEEEEEECCETCEEEEEEEEEEEC-SS--EEEEEEEEEEEEECC---CCCEEEEEEEEEE
T ss_pred ccceEEEEEEEcCCcceEEEeeeecccccchheeeEEeeEEEEE-Cc--EEEEEEEEEEEecCc---cccccceEEEEEE
Confidence 3345666666644 4444443331 0123444444555 33 556666554211100 0001256788888
Q ss_pred EEeeCCCCeEEEEEcC----------CceEEEEEEEEeccceEEEEEE
Q 025077 200 QHGLFPSTLVKVRVNT----------NGKVGAHVQQSFWQKFSIAVSG 237 (258)
Q Consensus 200 ky~ld~~s~~Kakvns----------~g~vg~~~~~~l~p~v~ltls~ 237 (258)
+|.+ +...+.+.... .-.+++.++++|.|++++-..-
T Consensus 257 ~Y~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~a~y 303 (311)
T PF13609_consen 257 AYTF-GKWTLYAGYGYSDSADGSDDDATSYAVGVDYDFSKNTSLYAEY 303 (311)
T ss_dssp EEEE-TTEEEEEEEEEEEE-GCCTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEe-CCEEEEEEEEEEEccCCCCCCeEEEEEEEEEEcCCCEEEEEEE
Confidence 8888 44666664432 2348888888888886665544
No 19
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=83.16 E-value=37 Score=31.60 Aligned_cols=67 Identities=16% Similarity=0.082 Sum_probs=47.5
Q ss_pred eeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCC
Q 025077 169 TAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS 245 (258)
Q Consensus 169 ~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~ 245 (258)
+.+.+.+.|.+.. -+++++.+...+.+....-+--.-.-.+++.+.|+|+|++.+.+++.....+..
T Consensus 259 ~~~~~~l~w~pt~----------~t~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~~~~~~~~y~ 325 (381)
T PF10082_consen 259 PSWDASLTWSPTP----------KTTVTLSASRSIEESTDAGGSYVRTTSVSLGWTHQLTPRLSLSLSAGYENRDYQ 325 (381)
T ss_pred eEEEEEEEEeccC----------ceEEEEEEEEEEcCcccCCCcEEEEEEEEEEEEEEeeeeEEEEEEEEEEEeEcC
Confidence 4556677776644 478888888888666344333333456888899999999999999988765543
No 20
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=79.29 E-value=63 Score=31.26 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=13.3
Q ss_pred ccceeeeEEEEEeccCCcce
Q 025077 110 NTVLSLGTDAAFDISTRTFS 129 (258)
Q Consensus 110 ~~~~~lG~e~~yd~~~~~~~ 129 (258)
++.|++|+-+.++..+.++.
T Consensus 162 ~d~lSiG~G~~~~y~~~~l~ 181 (435)
T PRK10716 162 NNAFSFGLGFNAVYARAKIE 181 (435)
T ss_pred CCcEEEEEeEEEEEEEEEEE
Confidence 66788888777666554444
No 21
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=78.13 E-value=53 Score=32.17 Aligned_cols=60 Identities=7% Similarity=-0.005 Sum_probs=38.1
Q ss_pred cCeEEEEEEEEeCCCcceeEEEEEEEeecCC-----------cccCCC----CCCCceEEEEEEEeeCCCCeEEEEE
Q 025077 152 LENLRASYYQELVPLTRTAVAAELKHSFSNH-----------RSISDN----IPIPTSLTVGFQHGLFPSTLVKVRV 213 (258)
Q Consensus 152 ~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~-----------~~~~~~----~~~~~~~tiG~ky~ld~~s~~Kakv 213 (258)
.+.+..+++|+++|+ +.+...++|..=+. ...-.. =....++++|..|++++.-++||-|
T Consensus 285 P~~~el~~~~~~~d~--w~~~~s~~wT~WS~f~~l~~~~~~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragi 359 (440)
T COG2067 285 PASAELSGQHKVADQ--WAIHGSVKWTDWSSFDKLDFVFTFGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGI 359 (440)
T ss_pred CcEEEEeeeeccCCC--eEEEEEEEEeeccCCceEEEEEcCCCccccccccccccccEEeeeceeEcCccceEeeee
Confidence 468999999999999 88888999865221 000000 1113466777777776666666543
No 22
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=76.54 E-value=76 Score=30.71 Aligned_cols=137 Identities=12% Similarity=-0.013 Sum_probs=66.6
Q ss_pred eEEEEEEEe-ccceeeeEEEEEeccCCcceeEEEEEeeecCc--eEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEE
Q 025077 101 IVKFSVVAG-NTVLSLGTDAAFDISTRTFSNYNAGLSFNTAL--FNASVNLNDKLENLRASYYQELVPLTRTAVAAELKH 177 (258)
Q Consensus 101 ~v~~s~v~g-~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d--~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~ 177 (258)
.+..+.... +++|.+.+.+.|..=+ ++.+..+- +.... ....-...| .-.++...=+++++++.+-+| +.|
T Consensus 288 ~~~lg~~~~~~~~~~l~~d~~wt~WS-~~~~l~i~--~~~g~~~~~~~~~w~D-~w~~~~G~~Y~~n~~l~LRaG--~~y 361 (435)
T PRK10716 288 MWEVSGYNRVAPQWAIHYSLAYTSWS-QFQELKAT--SSNGDTLFQKHEGFKD-AYRIALGTTYYYDDNWTFRTG--IAF 361 (435)
T ss_pred EEEEEeEEecCCcEEEEEEEEEeeec-ccceEEEE--eCCCcceeccccccee-eeEEEeeEEEECCCCeEEEEe--eEe
Confidence 444444443 5788888888774211 13332221 11111 111112233 234666777799999666555 555
Q ss_pred eecC--CcccCCCCC--CCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEE---EEEeeeccCCCCCCee
Q 025077 178 SFSN--HRSISDNIP--IPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIA---VSGETDIRASSWIPNV 250 (258)
Q Consensus 178 ~~~~--~~~~~~~~~--~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~lt---ls~~iD~~~~~~~hK~ 250 (258)
+-+. .....-..| ....+++|+.|++.++..+. ++|++...+..++. ++++.|. ..|-+
T Consensus 362 d~spv~~~~r~~~~Pd~dr~~~s~G~~y~~~~~~~vd----------~ay~y~~~~~~~i~~~~~~~~~~~----~~~~~ 427 (435)
T PRK10716 362 DDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVD----------VGVSYMHGQSVKINEGPYQFESEG----KAWLY 427 (435)
T ss_pred ccCCCCcCcccccccCCCCeEEEeeeEEEcCCCcEEE----------EEEEEEEecccceeccceEEEEEe----EEEEE
Confidence 4221 100000111 36789999999996654443 33433332222221 2333332 24778
Q ss_pred EEEEEEe
Q 025077 251 RFGMAFS 257 (258)
Q Consensus 251 Gl~l~l~ 257 (258)
|+++..+
T Consensus 428 ~~~~~y~ 434 (435)
T PRK10716 428 GTNFNYA 434 (435)
T ss_pred EEEEEEE
Confidence 8887653
No 23
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=76.50 E-value=67 Score=30.03 Aligned_cols=65 Identities=8% Similarity=0.103 Sum_probs=42.5
Q ss_pred CceEEEEEEEeeCCCCeEEEEEcC--------------CceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEE
Q 025077 192 PTSLTVGFQHGLFPSTLVKVRVNT--------------NGKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256 (258)
Q Consensus 192 ~~~~tiG~ky~ld~~s~~Kakvns--------------~g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l 256 (258)
...+++|++|++.+...++++.+. ...+.++|+-++.++..+.++..=|.-+.+..+=|++.+.+
T Consensus 237 ~~~~~~g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~~~~dnS~Diaf~l~l 315 (319)
T PF11383_consen 237 TWFGGLGYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENLFNVDNSPDIAFHLGL 315 (319)
T ss_pred eEEEEEEEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecccccCCCCCeEEEEEE
Confidence 445667777777677777766653 24577777777777777777775555444556666666655
No 24
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=75.08 E-value=74 Score=29.89 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=58.0
Q ss_pred ccceeeeEEEEEeccCCcceeEE--------------EEEe-eecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEE
Q 025077 110 NTVLSLGTDAAFDISTRTFSNYN--------------AGLS-FNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAE 174 (258)
Q Consensus 110 ~~~~~lG~e~~yd~~~~~~~~~~--------------~~~~-y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae 174 (258)
++.|.+|+-+.+.....++..+. ..+. +...+........+.+=.++++...+++|+ +.+|
T Consensus 151 ~d~lSvGag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~lG~~y~~~~~--~~lG-- 226 (427)
T PF03349_consen 151 NDRLSVGAGLNYQYGSGNLERYYGLTGQGSLIGGLPGLNFGSSGNGDGLSEDKGDGWGFGFNLGALYKPNDN--LRLG-- 226 (427)
T ss_dssp SSSEEEEEEEEEEEEEEEEEEEECCHHHHHCHCHHHCCCHEEECTTEEEEEEEEEEEEEEEEEEEEEECCTT--EEEE--
T ss_pred CCceEEEeeeEEEEEEEEeeeccccccccccccccccccccccCCccceeeccccccceEEEEEEEEEeCCC--eEEE--
Confidence 57888888888876655554411 1111 222333333444444445777778888887 6666
Q ss_pred EEEeecCCcccCCCCCCCceEEEEEEEeeC-------------CCCeEEEEEcCCceEEEEEEEEeccceEEEEEEee
Q 025077 175 LKHSFSNHRSISDNIPIPTSLTVGFQHGLF-------------PSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGET 239 (258)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld-------------~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~i 239 (258)
++|+.... +.+-..+... .....+.+++-=..+.+++.+++.|+..|.+..+.
T Consensus 227 ~sY~s~~~------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~~l~~d~~~ 292 (427)
T PF03349_consen 227 LSYRSPIW------------HDLDGDATFSISSSFAGPGAAGGSTADGEVDLDLPASLSLGVAYRFTDKLLLSADYEW 292 (427)
T ss_dssp EEEE--BE------------EEEEEEEEEEEECTTCCCCH-TTSEEEEEEEEEB-EEEEEEEEEESSSSEEEEEEEEE
T ss_pred EEEeeeeE------------EeeeceEEEecccccccccccccccccceeeeeeceeEEEEEEEecCCCEEEEEEEEE
Confidence 44433211 1111111110 01233455566666667777777666666665543
No 25
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=74.80 E-value=76 Score=29.84 Aligned_cols=134 Identities=13% Similarity=0.023 Sum_probs=70.3
Q ss_pred ccceeeeEEEEEec-cCCcceeEEEEEeee----cCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecC--C
Q 025077 110 NTVLSLGTDAAFDI-STRTFSNYNAGLSFN----TALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSN--H 182 (258)
Q Consensus 110 ~~~~~lG~e~~yd~-~~~~~~~~~~~~~y~----~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~--~ 182 (258)
.++|.+.+++.|.- ++-+.. .+-.+.+. ..+........| .-.+++..=++++|++.+-+| +.|.-.. .
T Consensus 281 ~~~~~l~~d~~~~~WS~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~lG~~Y~~~~~l~lr~G--~~y~~sp~~~ 356 (427)
T PF03349_consen 281 TDKLLLSADYEWTDWSSFDNL-YNDQFTFANGNGSTNNNIPFNWKD-TWVYRLGAEYKFNDKLTLRAG--YAYDSSPIPD 356 (427)
T ss_dssp SSSEEEEEEEEEEEGGG-SCE-EEEEEEETTECTEEEEEEE---EE-EEEEEEEEEEESSSSEEEEEE--EEEEE-SS-C
T ss_pred CCCEEEEEEEEEEEhhhhhhh-cccccccccccccccccCCCCccc-hheeeeeeEEEcCcCEEEEEE--EEEeccccCc
Confidence 68899999988842 221211 11111221 123333333444 246788888899999666555 4444322 1
Q ss_pred c--ccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEE---eeeccCCCCCCeeEEEEEEe
Q 025077 183 R--SISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSG---ETDIRASSWIPNVRFGMAFS 257 (258)
Q Consensus 183 ~--~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~---~iD~~~~~~~hK~Gl~l~l~ 257 (258)
. .+..-......+++|+.|++.+ +..+-+.|++......+..... .++.+--...|-+|+++..+
T Consensus 357 ~~~~~~~p~~~~~~~s~G~~y~~~~----------~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~ 426 (427)
T PF03349_consen 357 ETRDPLLPDTDRHWLSAGAGYRFSK----------NLSLDFAYQYIFYNDVTINSTSDNGGLNGTYDGSAHVFGLSVSYK 426 (427)
T ss_dssp CC-BSSS--SSEEEEEEEEEEESSS----------SEEEEEEEEEEEEEEEEEEEB--GTCEEEEEEEEEEEEEEEEEEE
T ss_pred cccchhhccCCcEEEEEeeEEEcCC----------CeEEEEEEEEEEccCcccccccccCceEEEEEEEEEEEEEEEEeE
Confidence 1 0000111256899999999864 4566677777776666555532 22221001247788777653
No 26
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=74.68 E-value=79 Score=30.00 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=30.6
Q ss_pred EEcCCceEEEEEEEEeccceEEEEEEeeeccCCC------CCCeeEEEEEE
Q 025077 212 RVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS------WIPNVRFGMAF 256 (258)
Q Consensus 212 kvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~------~~hK~Gl~l~l 256 (258)
|-|....+++.+...+++-+.+.+......++-+ ..+-++|++.+
T Consensus 329 R~D~~~~~~~~~~Y~~~~~~~~~l~~~~~~rdSN~~~~~yd~~~v~ls~~~ 379 (381)
T TIGR03014 329 RSDRTRSGSLSLDWSPVRAVRISAAFQREKRDSNSDGFDFDSNSVSVSATL 379 (381)
T ss_pred cccceEEEEEEEEEEEcceEEEEEEEEEEeccCCCCCCceeeeEEEEEEEE
Confidence 5556666788888888888877777777665433 23666666655
No 27
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=73.73 E-value=63 Score=33.13 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=88.6
Q ss_pred CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEe-ccceeeeEEEEEeccCCcceeEEEEEeeecCceE
Q 025077 65 SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAG-NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALFN 143 (258)
Q Consensus 65 s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g-~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~ 143 (258)
+-.+..+|.+|...- ..+||+... .--++.++-.. .+.|.+-+-..+|.-++... -...+..++|
T Consensus 448 ~l~~~~~~~~DdY~~-t~~GL~~~~---------~~~~~ld~~y~~~~~l~~~af~~~q~~~s~Q~---gs~~~~~~~W- 513 (637)
T PF11854_consen 448 SLSLSGRYANDDYDD-TDIGLTESD---------DYGYDLDASYQPSDDLSLYAFYNQQWIDSDQA---GSQNFSTPDW- 513 (637)
T ss_pred EEeEEEEEccCCCCC-cccccccce---------eeeeeeeEEEEECCCeEEEEEEEeEeehhhhc---cccCccCCCc-
Confidence 455566666666544 346665410 01222233222 45555555556554333222 1123456677
Q ss_pred EEEEEccccCeEEEEEEEE--eCCCcceeEEEEEEEeecCCc---------ccCCCCCCCceEEEEEEEeeCCCCeEEEE
Q 025077 144 ASVNLNDKLENLRASYYQE--LVPLTRTAVAAELKHSFSNHR---------SISDNIPIPTSLTVGFQHGLFPSTLVKVR 212 (258)
Q Consensus 144 ~s~~l~~~~~~~~aS~~~k--v~~~~~~~vgae~~~~~~~~~---------~~~~~~~~~~~~tiG~ky~ld~~s~~Kak 212 (258)
...+.|+...+++..-+. +.++ +.+|++.+|..+... +.++--....++.+-++|+|++...+|.
T Consensus 514 -~~~~~D~~~~~G~G~~~~~l~~~k--L~lg~dYsys~~~s~~~~~~~~~~~~pd~~~~~h~l~~~~~y~ls~~~~lrl- 589 (637)
T PF11854_consen 514 -TSDTEDKVTTVGAGFSYQGLMDDK--LSLGLDYSYSDSDSDTDVTQGGSGPYPDYYSRQHNLNLYARYQLSKNMSLRL- 589 (637)
T ss_pred -cccccceeEEEEeceEeecccCcc--EEEeeeEEEecCccceEeecccccCCCCceeeEEEEEEEEEEEeCCCeEEEE-
Confidence 455666777777777666 7777 888989888654320 1111111245678888888887777664
Q ss_pred EcCCceEEEEEEEEeccce-----------EEEEEEeeeccCCCCCCeeEEEEEEe
Q 025077 213 VNTNGKVGAHVQQSFWQKF-----------SIAVSGETDIRASSWIPNVRFGMAFS 257 (258)
Q Consensus 213 vns~g~vg~~~~~~l~p~v-----------~ltls~~iD~~~~~~~hK~Gl~l~l~ 257 (258)
...||+---... .++.-+.+++. - ..|.||+++..+
T Consensus 590 -------~y~yEr~~~~D~~~~g~~~~~i~~~~~~g~~~~n-Y-~ah~v~ls~~y~ 636 (637)
T PF11854_consen 590 -------DYRYERYSDTDWANDGVAPDSIPNLLTLGDLNHN-Y-NAHYVGLSLSYK 636 (637)
T ss_pred -------EEEEEeeeccchhhccccCCCccceeecCCCCCC-c-eeEEEEEEEEEe
Confidence 233333221111 23333334431 1 369999999864
No 28
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=72.39 E-value=13 Score=32.76 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=46.2
Q ss_pred ccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEE--Ec--------CCc---
Q 025077 151 KLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVR--VN--------TNG--- 217 (258)
Q Consensus 151 ~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kak--vn--------s~g--- 217 (258)
++.++.++|..|+++++-++.|..+.+...+. .-..-|-..|.+|+...+-+| -+ .+|
T Consensus 60 ng~E~~~~y~~k~~d~~~l~PG~~~~~~s~~~---------~yrPylk~~Y~fd~~~~~~~RYRy~~~~~~~~~~~~~~~ 130 (218)
T PF06178_consen 60 NGNEFEISYRYKLNDNFTLQPGFSLESNSDGT---------QYRPYLKLGYKFDNGLSVSGRYRYDYQNYSSDDLDGDKD 130 (218)
T ss_dssp -EEEEEEEE-EESSSSEEEEEEEEEEEETTEE---------EEEEEEEEEEEECTTEEEEEEEEEEEESS-EE-TTS-EE
T ss_pred ceeEEEEEEEEEcCCCEEEecceEEEECCCcc---------EEeeEEEEEEEecCCEEEEEEeecceEccCCcccCCccc
Confidence 46899999999999998788887766543322 234455566666666433332 11 111
Q ss_pred -----eEEEEEEEEeccceEEEEEEe
Q 025077 218 -----KVGAHVQQSFWQKFSIAVSGE 238 (258)
Q Consensus 218 -----~vg~~~~~~l~p~v~ltls~~ 238 (258)
++-+-+-.++.+.+.+..-..
T Consensus 131 ~~~~~r~d~~i~Y~~~~~~~~~y~~~ 156 (218)
T PF06178_consen 131 NNDRHRFDLWIGYKFNDDWSLSYNPV 156 (218)
T ss_dssp ---EEEEEEEEEEE-SSSEEEEEEEE
T ss_pred cCccEEEEEEEEEEEcCCEEEEEEEE
Confidence 455555556666666666665
No 29
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=69.14 E-value=48 Score=30.62 Aligned_cols=62 Identities=6% Similarity=0.065 Sum_probs=42.0
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCC--ce-EEEEEEEE
Q 025077 153 ENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTN--GK-VGAHVQQS 226 (258)
Q Consensus 153 ~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~--g~-vg~~~~~~ 226 (258)
......+=.+++++ +.+..+..+.... +..-.+..+|.|.+...+++++++. +. +++.|+.+
T Consensus 314 ~~~~~~~gk~l~~~--l~i~~~~~~~~~~----------~~~~~~~l~y~l~~~~~l~~~~~~~~~~~g~~l~y~~~ 378 (379)
T PF04357_consen 314 SDTSVTVGKYLSDR--LYISYQFGVDLGG----------SQTGEFSLEYRLNPNLSLRGSSDSGNTSQGVDLIYRKD 378 (379)
T ss_pred CceEEEEEEecCCC--EEEEEEEeecCCC----------CceEEEEEEEEEcCCEEEEEEEEcCCCceEEEEEEEEE
Confidence 34666677778888 5454443343322 2235788999999999999999666 66 77777654
No 30
>PF05275 CopB: Copper resistance protein B precursor (CopB); InterPro: IPR007939 This family consists of several bacterial copper resistance proteins. Copper is essential and serves as a cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to free radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels [] and has been shown to act as an ATPase (3.6.1.3 from EC).; GO: 0005507 copper ion binding, 0006878 cellular copper ion homeostasis, 0009279 cell outer membrane
Probab=66.40 E-value=66 Score=28.35 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=51.6
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCC--CeEEEEEcCCceEEE----EEEEE
Q 025077 153 ENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPS--TLVKVRVNTNGKVGA----HVQQS 226 (258)
Q Consensus 153 ~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~--s~~Kakvns~g~vg~----~~~~~ 226 (258)
....+=|.|-|+|-+++++|+...+...+. .+-..||.+--.+-. .-..+-|.++|.+++ .|+..
T Consensus 55 ~e~q~lysr~is~fwd~q~GvR~d~~~~~~---------r~~~~iG~qGLAPY~FE~da~lyvs~~G~~~~r~e~eydll 125 (210)
T PF05275_consen 55 AEIQALYSRAISPFWDVQAGVRYDFRPGPD---------RTWAVIGVQGLAPYWFEVDATLYVSEDGDVAARLEAEYDLL 125 (210)
T ss_pred heeeeecccccCccceEEEEeEeecCCCCC---------ceEEEEEEEEcCcceEeeeeeEEEcCCCcEEEEEEEEeeee
Confidence 468899999999999999997666543322 678899988665444 345567888887764 33334
Q ss_pred eccceEEEEEEeee
Q 025077 227 FWQKFSIAVSGETD 240 (258)
Q Consensus 227 l~p~v~ltls~~iD 240 (258)
|.+...|.=..|++
T Consensus 126 lTqrLiLqP~~E~~ 139 (210)
T PF05275_consen 126 LTQRLILQPRLEAN 139 (210)
T ss_pred eeeeEEEEEeEEEE
Confidence 44444444444443
No 31
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=66.09 E-value=99 Score=27.64 Aligned_cols=108 Identities=10% Similarity=0.114 Sum_probs=65.6
Q ss_pred eeEEEEEeeecCceEEEEEEccc---------------cCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCc
Q 025077 129 SNYNAGLSFNTALFNASVNLNDK---------------LENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPT 193 (258)
Q Consensus 129 ~~~~~~~~y~~~d~~~s~~l~~~---------------~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~ 193 (258)
..|.+++.|..+.+.+++..... .+.+.++.-..+.+ +.+++...+.-..... .....+..
T Consensus 162 ~~~~~~~~Y~~~~~~l~a~y~~~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~---~~v~a~y~~~~~~~~~-~~~~~~~~ 237 (329)
T cd00342 162 RGYGAGLSYENGPLSLGAAYDQQRNGGGAAGGAAGATSQRAYGAGASYDFGG---LKLGAGYTNTRNDNGG-GGGSAKFN 237 (329)
T ss_pred ceEEEEEEEccCCEEEEEEEEEeeCCCcccccccccceEEEEEEEEEEEEcc---EEEEEEEEEEEccCCC-CCCceEEE
Confidence 46888889988877777664421 13355555556654 4566666553211100 00011256
Q ss_pred eEEEEEEEeeCCCCeEEEEEc------------CCceEEEEEEEEeccceEEEEEEeee
Q 025077 194 SLTVGFQHGLFPSTLVKVRVN------------TNGKVGAHVQQSFWQKFSIAVSGETD 240 (258)
Q Consensus 194 ~~tiG~ky~ld~~s~~Kakvn------------s~g~vg~~~~~~l~p~v~ltls~~iD 240 (258)
.+.+|++|.+.+...+.+-.. ..-.+.+.+++.|.|.+.+-.....+
T Consensus 238 ~~~lga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~G~~Y~~~~~~~l~~~y~~~ 296 (329)
T cd00342 238 GYELGATYQLTPALRLGAAYYYTKDRNDGGGDGKANQVALGADYALSKRTDLYAEYGYQ 296 (329)
T ss_pred EEEEeEEEEcCCceEEEEEEEEEeccCCCCCCCCeEEEEEEEeEeeccchhheeeeeee
Confidence 799999999987666665331 12357889999999987776666443
No 32
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=65.89 E-value=1.2e+02 Score=28.41 Aligned_cols=63 Identities=17% Similarity=0.046 Sum_probs=39.3
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCc
Q 025077 153 ENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNG 217 (258)
Q Consensus 153 ~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g 217 (258)
-.+.++|=.+++|+ ..+-++..+.-..-.....=....+-+++|++|.+.+.+.+-.-+-.|-
T Consensus 238 ~~~~~g~~y~~~~~--~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~ 300 (319)
T PF11383_consen 238 WFGGLGYGYQLTEN--HSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENL 300 (319)
T ss_pred EEEEEEEEEEecCC--EEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecc
Confidence 34677888889998 6667677664321100001111257899999999977777776655543
No 33
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=61.74 E-value=23 Score=32.26 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=48.7
Q ss_pred ceeeeEEEEEeccCCcceeEEEEEeee------cCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEE
Q 025077 112 VLSLGTDAAFDISTRTFSNYNAGLSFN------TALFNASVNLNDKLENLRASYYQELVPLTRTAVAAEL 175 (258)
Q Consensus 112 ~~~lG~e~~yd~~~~~~~~~~~~~~y~------~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~ 175 (258)
.|.+|+|+=|-. .++-.-.+.|++|. ..-+++++++++-...+..+|--|.++. +++...+
T Consensus 191 r~S~GaE~yys~-~~ks~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~--~a~~Srf 257 (260)
T PF12519_consen 191 RFSAGAELYYSA-LNKSPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPN--SAFCSRF 257 (260)
T ss_pred eEeeccEEEEEe-eccCCcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCC--ceEEeec
Confidence 899999998874 33333577888884 4478999999999999999999999998 6666444
No 34
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=59.23 E-value=1.3e+02 Score=26.80 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=49.2
Q ss_pred ceeEEEEEeeecCceEEEEEEcc------------ccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceE
Q 025077 128 FSNYNAGLSFNTALFNASVNLND------------KLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSL 195 (258)
Q Consensus 128 ~~~~~~~~~y~~~d~~~s~~l~~------------~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~ 195 (258)
...+.+++.|....+.+.+.... +...+.++.-+++++. +.+.+...+.-.... .+ ...+...+
T Consensus 200 ~~~~~~ga~Y~~~~~~v~a~y~~~~~~~~~~~~~~~~~~~~lga~Y~~~~~--~~~~~~y~~~~~~~~-~~-~~~~~~~~ 275 (329)
T cd00342 200 QRAYGAGASYDFGGLKLGAGYTNTRNDNGGGGGSAKFNGYELGATYQLTPA--LRLGAAYYYTKDRND-GG-GDGKANQV 275 (329)
T ss_pred EEEEEEEEEEEEccEEEEEEEEEEEccCCCCCCceEEEEEEEeEEEEcCCc--eEEEEEEEEEeccCC-CC-CCCCeEEE
Confidence 45577788887777777665321 2245677778888886 556656655432210 00 01235689
Q ss_pred EEEEEEeeCCCCeEEE
Q 025077 196 TVGFQHGLFPSTLVKV 211 (258)
Q Consensus 196 tiG~ky~ld~~s~~Ka 211 (258)
.+|+.|.+.+.+.+-+
T Consensus 276 ~~G~~Y~~~~~~~l~~ 291 (329)
T cd00342 276 ALGADYALSKRTDLYA 291 (329)
T ss_pred EEEEeEeeccchhhee
Confidence 9999999988765543
No 35
>TIGR03016 pepcterm_hypo_1 uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.
Probab=58.36 E-value=1.5e+02 Score=28.75 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=46.6
Q ss_pred EEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCC-----
Q 025077 171 VAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS----- 245 (258)
Q Consensus 171 vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~----- 245 (258)
+++...|.+..+ .++.+++.|.=+.-.-...+-+....+++.+...|+|.+.+.+.-....++-+
T Consensus 348 ~~~~~~h~l~~r----------l~~~l~~~y~~~dy~~~~~r~d~~~~~~~gl~Y~~~~~~~~~l~Y~y~~~dSn~~~~~ 417 (431)
T TIGR03016 348 GSVLLTHRLSPR----------LTANLGLTYERNEGSGTNDQETDRTSVSAGLSYQLGENTTGSLTYRYQERDSNFEATD 417 (431)
T ss_pred eeEEEEEecccc----------cceeEEEEEEEeeccCCCCcccceEEEEEEEEEEecCCcEEEEEEEEEEecCCcccCc
Confidence 455555555443 34445555543332111046677888899999999999888888866654422
Q ss_pred -CCCeeEEEEEE
Q 025077 246 -WIPNVRFGMAF 256 (258)
Q Consensus 246 -~~hK~Gl~l~l 256 (258)
..+.+.+.+.+
T Consensus 418 Y~~N~i~l~l~~ 429 (431)
T TIGR03016 418 YTENRLMAEVTM 429 (431)
T ss_pred hhheEEEEEEEE
Confidence 24777777765
No 36
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=57.18 E-value=1.4e+02 Score=26.34 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=6.1
Q ss_pred CCCCeEEEEEEEc
Q 025077 50 IVPGLSTAFRSII 62 (258)
Q Consensus 50 ~~~Glk~~~~~~~ 62 (258)
+.+|++.....++
T Consensus 60 l~~g~~~~~~~~~ 72 (311)
T PF13609_consen 60 LDDGLTAGAQFEL 72 (311)
T ss_dssp ETTT-EEEEEEEE
T ss_pred ccCCcceeEEEEe
Confidence 4566654444443
No 37
>PRK09980 ompL outer membrane porin L; Provisional
Probab=56.33 E-value=45 Score=29.77 Aligned_cols=29 Identities=3% Similarity=-0.058 Sum_probs=21.7
Q ss_pred ccCeEEEEEE-EEeCCCcceeEEEEEEEee
Q 025077 151 KLENLRASYY-QELVPLTRTAVAAELKHSF 179 (258)
Q Consensus 151 ~~~~~~aS~~-~kv~~~~~~~vgae~~~~~ 179 (258)
.+.++.+||. .|+++++-++-|..+.+..
T Consensus 70 ~~~E~~~sY~~~k~~d~~tl~PG~~~~s~s 99 (230)
T PRK09980 70 GYNEIEGWYPLFKPTDKLTIQPGGLINDKS 99 (230)
T ss_pred cceEEEEEEEeEecCCCEEEecceEEEecC
Confidence 3678999995 5999997777776555543
No 38
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=55.68 E-value=1.7e+02 Score=26.98 Aligned_cols=155 Identities=16% Similarity=0.097 Sum_probs=87.6
Q ss_pred CeEEEEEEEc-cC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEE--EeccceeeeEEEEEeccC
Q 025077 53 GLSTAFRSII-PD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVV--AGNTVLSLGTDAAFDIST 125 (258)
Q Consensus 53 Glk~~~~~~~-p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v--~g~~~~~lG~e~~yd~~~ 125 (258)
|+..+..... ++ .+.+++.|+....++..+..... .|-+...=.+ -..|++-+..+..|-...
T Consensus 38 gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~T----------dn~L~t~I~~~~~~~pglk~~~~~s~~p~~ 107 (281)
T KOG3126|consen 38 GVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNT----------DNTLGTEITVEDQLAPGLKLTLDSSFSPNT 107 (281)
T ss_pred cEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeec----------CCccceEEEEccccCCceEEEEEEeecCcc
Confidence 5665555543 44 45567777666668888777765 1333322122 147888888888887633
Q ss_pred CcceeEEEEEeeecCceEEEE-EEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeC
Q 025077 126 RTFSNYNAGLSFNTALFNASV-NLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLF 204 (258)
Q Consensus 126 ~~~~~~~~~~~y~~~d~~~s~-~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld 204 (258)
++.+ --+-++|..+.+.++. .+.-+.-.+.+|...-.. . +-+|.++.++...+. -+...++.-|. -
T Consensus 108 ~~ks-~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~-g--~l~G~~~~fDt~~~~--------~t~~n~~lgy~-~ 174 (281)
T KOG3126|consen 108 GKKS-GKLKLSYARDHFNLGADDFLTANPLILGSLVLGHE-G--WLLGYETTFDTASGK--------LTKYNAALGYT-T 174 (281)
T ss_pred cccc-eeeecccccccceeeeccccccCCeEEEEEEeccc-c--eEEEEeEEEeccCCc--------EeeEEEEEEee-c
Confidence 2221 2233477777666664 111122345555443332 2 667999999886541 45555566666 3
Q ss_pred CCCeEEEEEcCCceEEEEEEEEeccc
Q 025077 205 PSTLVKVRVNTNGKVGAHVQQSFWQK 230 (258)
Q Consensus 205 ~~s~~Kakvns~g~vg~~~~~~l~p~ 230 (258)
++.++-..+||.+.....+=|++..+
T Consensus 175 ~d~~l~~~~nn~~~~~~s~yq~v~~~ 200 (281)
T KOG3126|consen 175 EDFTLHLNLNNGTEFLASIYQRVNEK 200 (281)
T ss_pred CCcEEEEEecccchhhhhhhhhhcch
Confidence 67788888877666444443444433
No 39
>PF02530 Porin_2: Porin subfamily; InterPro: IPR003684 This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to Gram-negative porins []. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of Gram-negative bacteria.; GO: 0015288 porin activity, 0006810 transport, 0016020 membrane
Probab=54.60 E-value=1.9e+02 Score=27.39 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=61.8
Q ss_pred cceeeeEEEEEeccCCcceeEEEEEeeecCc--eE-EEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCC
Q 025077 111 TVLSLGTDAAFDISTRTFSNYNAGLSFNTAL--FN-ASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISD 187 (258)
Q Consensus 111 ~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d--~~-~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~ 187 (258)
.+|.+++.+.+++..+. ...+.+.|.... |. ...... ..+.++|.|.-+++ |.+.+...+....
T Consensus 237 ~Gwav~~~~~~~~~~~d--~l~~q~~Yg~G~~~Y~g~~~~~~---~~~~~~~~~~w~~~--w~~~~~~~~~~t~------ 303 (379)
T PF02530_consen 237 WGWAVQAGGKINLGDGD--SLYFQATYGDGAGRYTGSSINLT---SAFDGAYYHNWNPQ--WRSYGGYQYNFTD------ 303 (379)
T ss_pred eeEEEEEEEEEEECCCC--EEEEEEEEECCchhccCCcccce---eeccceeeeccCcc--eeeeEEEEEcccC------
Confidence 45666666666654432 233444554332 21 111111 22789999999999 5556666665533
Q ss_pred CCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeee
Q 025077 188 NIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240 (258)
Q Consensus 188 ~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD 240 (258)
...++.+++|.. .....-..=.+.+++++-+--.+-|++.+++...-.
T Consensus 304 ----~~~~~~~~s~~~-~~~~~~~~~~~~~~v~anl~w~pv~~l~ig~E~~Y~ 351 (379)
T PF02530_consen 304 ----KVTITLGASYAV-GDSANGNDDFNIWQVGANLFWSPVKNLDIGAEYQYT 351 (379)
T ss_pred ----ceeEechhhccc-cccccccCCCcEEEEEEEEEEEECCCcEEEEEEEEE
Confidence 467777888722 221111111245567777777777777777666443
No 40
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=50.44 E-value=1.5e+02 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=13.8
Q ss_pred EEEEEEeccceEEEEEEeeec
Q 025077 221 AHVQQSFWQKFSIAVSGETDI 241 (258)
Q Consensus 221 ~~~~~~l~p~v~ltls~~iD~ 241 (258)
+.++-+|.+.+.|.++.+.+.
T Consensus 167 ~~l~~~l~~~l~l~~~~~~~y 187 (210)
T PF04338_consen 167 TGLKVKLTKNLSLSLSYNYDY 187 (210)
T ss_pred EEEEEEEeccEEEEEEEEEEE
Confidence 555666667767777766665
No 41
>PF14052 Caps_assemb_Wzi: Capsule assembly protein Wzi
Probab=48.61 E-value=1.5e+02 Score=28.58 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=29.5
Q ss_pred CceEEEEEE-EEeccceEEEEEEeeeccCCC-CCCeeEEEEEEe
Q 025077 216 NGKVGAHVQ-QSFWQKFSIAVSGETDIRASS-WIPNVRFGMAFS 257 (258)
Q Consensus 216 ~g~vg~~~~-~~l~p~v~ltls~~iD~~~~~-~~hK~Gl~l~l~ 257 (258)
...+.+.|+ ..+.+.+.++++..+|.-+++ ....+|.+|.++
T Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~g~~l~~~ 442 (443)
T PF14052_consen 399 SFYLELSYQSPSLNGGWSLGASVGYDNGDIPLYDDNFGAGLSVR 442 (443)
T ss_pred EEEEEEEEEcccccCCEEEEEEEEEecccccccCCCCCcEEEEe
Confidence 345666664 677788999999999986444 357777777664
No 42
>TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.
Probab=46.92 E-value=2.2e+02 Score=25.78 Aligned_cols=65 Identities=17% Similarity=0.088 Sum_probs=36.9
Q ss_pred CceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCC----CCCeeEEEEEE
Q 025077 192 PTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS----WIPNVRFGMAF 256 (258)
Q Consensus 192 ~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~----~~hK~Gl~l~l 256 (258)
...+.+|+.+.+.+.-.+-+--+.+.-+.+...-++.+++.+..|=++....+. +.|-+.++..|
T Consensus 224 ~~~~d~~~~~~~~~~~~~G~~Yr~~~ai~~~~G~~~~~~~~igysYd~~~s~l~~~~~gshEi~l~y~f 292 (292)
T TIGR03519 224 PFQLDLGANALYNDKLWAGAGYRGNDAVIGLVGFNLNKRLSIGYSYDFSTSSLSAYNGGSHEISVSYRF 292 (292)
T ss_pred ceEEEEeEEEEEeeeEEEEEEecCCCcEEEEEEEEeCCCEEEEEEEeeEcccccCCCCCcEEEEEEEeC
Confidence 344555555555433333333333444666666667666777777776664432 46888887653
No 43
>COG3203 OmpC Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]
Probab=45.77 E-value=1.7e+02 Score=27.70 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=34.6
Q ss_pred CceEEEEEEEeeCCCCeE-------EEEEc----C---CceEEEEEEEEeccceEEEEEEeeec
Q 025077 192 PTSLTVGFQHGLFPSTLV-------KVRVN----T---NGKVGAHVQQSFWQKFSIAVSGETDI 241 (258)
Q Consensus 192 ~~~~tiG~ky~ld~~s~~-------Kakvn----s---~g~vg~~~~~~l~p~v~ltls~~iD~ 241 (258)
...++++++|++++...+ |.|.. + .-.+.+..+..|......=+...++.
T Consensus 264 ~~~~~~~a~Y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~Y~fsKrt~~Yv~y~~~~ 327 (354)
T COG3203 264 TQNIEVGAQYQFTFGLRLSGAYYYSKGKDLNGVTDKDLVKYVDVGATYYFSKNTSTYVDYGINL 327 (354)
T ss_pred cccEEEEEEEecCccceEEEEEEeeecccccccCCCCcceEEEeccEEEEecCeeEEEEEEEEe
Confidence 558999999999988533 23321 1 22377777888888877777776665
No 44
>PF07642 DUF1597: Outer membrane protein family (DUF1597); InterPro: IPR011486 This is a family of proteins for which no function is known yet.
Probab=44.82 E-value=2.5e+02 Score=25.72 Aligned_cols=85 Identities=8% Similarity=0.015 Sum_probs=51.2
Q ss_pred eEEEEEeeecCc-eEEEEEEcc-------------ccCeEEEE--EEEEeCCCcceeEEEEEEEeecCCc-----ccCC-
Q 025077 130 NYNAGLSFNTAL-FNASVNLND-------------KLENLRAS--YYQELVPLTRTAVAAELKHSFSNHR-----SISD- 187 (258)
Q Consensus 130 ~~~~~~~y~~~d-~~~s~~l~~-------------~~~~~~aS--~~~kv~~~~~~~vgae~~~~~~~~~-----~~~~- 187 (258)
.+++-+.|+-.+ |.+.+..+- ....+.+. ..++++|+ +.+++..+|--..++ ....
T Consensus 209 ~~dl~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~g~a~y~~y~~~~~--~~l~~R~E~~~d~~~~~~~~~~~~~ 286 (344)
T PF07642_consen 209 FYDLVASYKPTDKLTLGLEYDYGWQDNGPDAGGGGDASWYGAALYLSYQFSDK--WSLGVRYEYFDDKDGVGAIIGTGTG 286 (344)
T ss_pred EEEEEEEEEcCCcEEEEEEEEEEEecCCcccCCCCCccEEEEEEEEEEEcCCC--EEEEEEEEEEECCCCccccccccCC
Confidence 466667776665 666665321 11112222 23788898 778888888543331 1111
Q ss_pred CCCCCceEEEEEEEeeCCCCeEEEEEcCC
Q 025077 188 NIPIPTSLTVGFQHGLFPSTLVKVRVNTN 216 (258)
Q Consensus 188 ~~~~~~~~tiG~ky~ld~~s~~Kakvns~ 216 (258)
.+..-..+|++..|++.+...+|.-+.-+
T Consensus 287 ~~~~~~~~T~t~~y~p~~nl~iR~E~r~d 315 (344)
T PF07642_consen 287 NGFSYYALTLTLNYKPTPNLMIRPEYRYD 315 (344)
T ss_pred CCcceEEEEEEEEEEECCCEEEEEEEEEE
Confidence 22224578999999998999999866544
No 45
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=42.53 E-value=2.4e+02 Score=26.76 Aligned_cols=27 Identities=7% Similarity=-0.127 Sum_probs=16.2
Q ss_pred eEEEEEEEEeccceEEEEEEeeeccCC
Q 025077 218 KVGAHVQQSFWQKFSIAVSGETDIRAS 244 (258)
Q Consensus 218 ~vg~~~~~~l~p~v~ltls~~iD~~~~ 244 (258)
.+++...+++.+++.+.++...--.+.
T Consensus 292 ~~~l~~~~~~~~~v~~~~~~~y~~~dY 318 (381)
T TIGR03014 292 GTSIGPTWQATSKIAVRGRLDYEERDF 318 (381)
T ss_pred EEEEeeEeeccceEEEEEEEEEEEeec
Confidence 356666677777776666664443333
No 46
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=38.83 E-value=4.4e+02 Score=26.90 Aligned_cols=99 Identities=8% Similarity=-0.001 Sum_probs=49.4
Q ss_pred EEEEEEEEeCCCcceeEEEEEEEeecCCc---------ccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEE-
Q 025077 155 LRASYYQELVPLTRTAVAAELKHSFSNHR---------SISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQ- 224 (258)
Q Consensus 155 ~~aS~~~kv~~~~~~~vgae~~~~~~~~~---------~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~- 224 (258)
+.+++-+.++++ +.+++.+.|.-.... .+.+-+.....+.++++|++.+...+++.+...-...-=|+
T Consensus 538 lgl~~~~~~~~~--LsL~~~ysY~~~~~Dt~~g~~~~~~~pdy~~~~~~l~l~a~Y~~~~~l~l~l~~~~eny~d~Dy~~ 615 (649)
T TIGR03509 538 AGLTYEGLLDLK--LSLGGDYSYSNGDSDYKSTTNTGGPYPDYFSNQHRLKLYGKYQLSKSSSLRLDYRYERYSDNDYAY 615 (649)
T ss_pred EEeEeccccCCc--EEEeeeEEEecCCCcceecccccccCCcccceEEEEEEEEEEecCCCeEEEEEEEEEEEeecchhh
Confidence 334433345677 667777777543210 00110001256999999999988887765522211111111
Q ss_pred EEeccc--eEEEEEEeeeccCCCCCCeeEEEEEEe
Q 025077 225 QSFWQK--FSIAVSGETDIRASSWIPNVRFGMAFS 257 (258)
Q Consensus 225 ~~l~p~--v~ltls~~iD~~~~~~~hK~Gl~l~l~ 257 (258)
..+.+. -.+..=|.++|. - ..|.||++++.+
T Consensus 616 ~~~~~~~~~~~~~~g~~~~~-Y-~ah~~~~s~~y~ 648 (649)
T TIGR03509 616 NNTAYDTIATVTTLGDQNPN-Y-NAHYLGVSYSYL 648 (649)
T ss_pred cCCCcccccccccccccCCC-c-eeeEEEEEEEEe
Confidence 112221 111122444441 1 369999999864
No 47
>PF05420 BCSC_C: Cellulose synthase operon protein C C-terminus (BCSC_C); InterPro: IPR008410 This entry contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown [].; GO: 0030244 cellulose biosynthetic process, 0019867 outer membrane
Probab=36.63 E-value=1e+02 Score=29.25 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=35.8
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCC
Q 025077 153 ENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPS 206 (258)
Q Consensus 153 ~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~ 206 (258)
-.+++..-+||+|+ +.+|+.+.++.... =.+....+-.+|.++++
T Consensus 298 y~l~a~~eyrls~~--~~lGg~~~~~~s~d-------Y~~~~~~lylRY~f~~~ 342 (342)
T PF05420_consen 298 YSLRAAVEYRLSPH--WFLGGGLDIDNSGD-------YNPSHAMLYLRYSFDPW 342 (342)
T ss_pred EEEEEEEEEEecCC--EEEEEEEehhhcCC-------CCcceEEEEEEEeccCC
Confidence 35888999999999 88999999876543 11788899999998763
No 48
>PF09381 Porin_OmpG: Outer membrane protein G (OmpG); InterPro: IPR018981 Porins are channel proteins in the outer membrane of Gram-negative bacteria which mediate the uptake of molecules required for growth and survival. Escherichia coli OmpG forms a 14 stranded beta-barrel and in contrast to most porins, appears to function as a monomer []. The central pore of OmpG is wider than other E. coli porins and it is speculated that it may form a non-specific channel for the transport of larger oligosaccharides []. ; PDB: 2IWV_C 2F1C_X 2JQY_A 2IWW_B 2WVP_A 2X9K_A.
Probab=34.98 E-value=94 Score=28.60 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=29.3
Q ss_pred CceEEEEEEEEeccceEEEEEEeeeccC--CC---CCCeeEEEEEE
Q 025077 216 NGKVGAHVQQSFWQKFSIAVSGETDIRA--SS---WIPNVRFGMAF 256 (258)
Q Consensus 216 ~g~vg~~~~~~l~p~v~ltls~~iD~~~--~~---~~hK~Gl~l~l 256 (258)
.-++|++++|.+.|++++++-=.....+ .- +-|.-|+|++.
T Consensus 254 ~~RlGll~~~~~~~glsmtLEYAYE~q~hd~g~~~kfHy~GvGv~Y 299 (301)
T PF09381_consen 254 FTRLGLLYEYDFPNGLSMTLEYAYEWQDHDEGDSDKFHYTGVGVNY 299 (301)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEEEESSSSSEEEEEEEEEEEE
T ss_pred cceeEEEEecccCCCcEEEEeeeeehhhccCCcccceeeeccceee
Confidence 3579999999999998888766444322 11 23888888864
No 49
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=30.71 E-value=25 Score=25.69 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCce--EEEEEEEEe--ccc
Q 025077 205 PSTLVKVRVNTNGK--VGAHVQQSF--WQK 230 (258)
Q Consensus 205 ~~s~~Kakvns~g~--vg~~~~~~l--~p~ 230 (258)
+..++|++|-.||+ ||..|++++ .|+
T Consensus 27 R~~syr~~Vq~NGnLLIG~AYT~~m~L~PG 56 (71)
T PF14250_consen 27 RKASYRVSVQGNGNLLIGSAYTKQMGLKPG 56 (71)
T ss_pred cCceEEEEEecCCCEEEcHHHHHHhCCCCC
Confidence 56799999999997 788898875 666
No 50
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=30.12 E-value=3.5e+02 Score=23.04 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=11.8
Q ss_pred EEEEEEEeCCCcceeEEEEEEE
Q 025077 156 RASYYQELVPLTRTAVAAELKH 177 (258)
Q Consensus 156 ~aS~~~kv~~~~~~~vgae~~~ 177 (258)
...+-++++++ +.+++|..+
T Consensus 168 ~~~~~y~~~~~--~~~~~~~~~ 187 (248)
T PF13557_consen 168 NFALSYALTPK--LSLGLEGYG 187 (248)
T ss_pred EEEEEEEcCcc--eEEeEEeEE
Confidence 34445566776 566666653
No 51
>PF11751 DUF3308: Protein of unknown function (DUF3308); InterPro: IPR019861 This entry describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Cytophaga johnsonae (Flavobacterium johnsoniae), that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss of the rapid gliding phenotype.
Probab=29.86 E-value=3.9e+02 Score=23.61 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=69.6
Q ss_pred EEEEEeeecCceEEEEEEcccc-----------------CeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCc
Q 025077 131 YNAGLSFNTALFNASVNLNDKL-----------------ENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPT 193 (258)
Q Consensus 131 ~~~~~~y~~~d~~~s~~l~~~~-----------------~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~ 193 (258)
.++|+-|..++|.+.+.+.+-. -.+.++|-..+++++++.-.+.+.+.... ..
T Consensus 140 ~~~G~~~~~~~~~~G~S~~~l~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~p~~~~~~~~~~----------~~ 209 (274)
T PF11751_consen 140 FGAGLYYYYDNFYVGLSVPHLNQPSFSFSNNSNNKLPRHYYLSAGYRFDLNEDFKLSPSVLYRYQGGS----------PQ 209 (274)
T ss_pred cceEEEEEcCCEEEEEEhHHhcccccccccccccccceEEEEEEEEEEecCCCeEEEEEEEEEEeCCC----------ce
Confidence 4567777777777776644311 12567777777776555554444333221 23
Q ss_pred eEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCC----CCCeeEE
Q 025077 194 SLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS----WIPNVRF 252 (258)
Q Consensus 194 ~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~----~~hK~Gl 252 (258)
.+.+|+++.++..-.+=+-.++..-+++.+.-++.+++.+.++=++...++. +.|-+-+
T Consensus 210 ~~~~~~~~~~~~~~~~G~~yr~~~a~~~~~g~~~~~~~~igysYd~~~s~l~~~~~gshEi~l 272 (274)
T PF11751_consen 210 QLDIGAMFRYNDRFWAGLGYRSNDAFSFMLGFNLKNNFRIGYSYDFNLSNLNNYSGGSHEISL 272 (274)
T ss_pred EEEEEEEEEEeeeEEEEEEEeCCCcEEEEEEEEECCCEEEEEEEeeecccccCCCCCeEEEEE
Confidence 5788888887665555555557777777777888778888888777765443 3455544
No 52
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=29.64 E-value=2.2e+02 Score=20.54 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=12.5
Q ss_pred CceEEEEEEEeeCCCCeEEEEEc
Q 025077 192 PTSLTVGFQHGLFPSTLVKVRVN 214 (258)
Q Consensus 192 ~~~~tiG~ky~ld~~s~~Kakvn 214 (258)
++.+++|++|.+.++..+++.+.
T Consensus 39 ~~A~A~G~~~~~~~~~~~~~~~s 61 (78)
T PF03895_consen 39 ESAVAVGASYRPNENVMVNAGVS 61 (78)
T ss_dssp EEEEEEEEEEE-TSSEEEEEEEE
T ss_pred cccEEEEEEEEeCCCEEEEEEEE
Confidence 55666666666655555555444
No 53
>PF04453 OstA_C: Organic solvent tolerance protein; InterPro: IPR007543 This family is involved in organic solvent tolerance in bacteria. The region contains several highly conserved, potentially catalytic, residues. ostA is one of a number of genes that confer organic solvent tolerance in Escherichia coli [, ]. This protein has significant medical importance since endoscopes are disinfected by pre-cleaning and soaking them in glutaraldehyde. Tolerant bacteria may, therefore, survive this disinfecting procedure [].; GO: 0010033 response to organic substance, 0016044 cellular membrane organization, 0019867 outer membrane
Probab=27.39 E-value=2.9e+02 Score=25.53 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=33.5
Q ss_pred CCeEEEEEEEeccceeeeEEEEEeccCCcceeEEEEEeeecC
Q 025077 99 DRIVKFSVVAGNTVLSLGTDAAFDISTRTFSNYNAGLSFNTA 140 (258)
Q Consensus 99 ~P~v~~s~v~g~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~ 140 (258)
.|++....+--.+.|.+..++.||.....+.+.++.+.|..+
T Consensus 306 Sd~~~~~~~~~~~~l~l~~~~~yd~~~~~~~~~~~~~~~~~~ 347 (388)
T PF04453_consen 306 SDLVAELSLSPNDNLSLSSDTQYDPYDNRISRSNVSLSYRPD 347 (388)
T ss_pred cceeEEEEEEecCCEEEEEEEEECCCCCceEEEEEEEEEEcC
Confidence 555544444446789999999999999999999999999765
No 54
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=25.86 E-value=2.6e+02 Score=20.14 Aligned_cols=39 Identities=10% Similarity=-0.084 Sum_probs=24.4
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEee
Q 025077 153 ENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGL 203 (258)
Q Consensus 153 ~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~l 203 (258)
..+...+.++++++ +.+-+.+++ ...+ +....+|..|.+
T Consensus 40 ~A~A~G~~~~~~~~--~~~~~~~s~-~~~~---------~~~~~~G~~~~w 78 (78)
T PF03895_consen 40 SAVAVGASYRPNEN--VMVNAGVSY-GSGG---------DVGAGAGVSYSW 78 (78)
T ss_dssp EEEEEEEEEE-TSS--EEEEEEEEE-ETTS-----------EEEEEEEEEE
T ss_pred ccEEEEEEEEeCCC--EEEEEEEEe-cCCC---------CEEEEEEEEeEC
Confidence 56777888888998 555544555 3334 778888888864
No 55
>TIGR03016 pepcterm_hypo_1 uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.
Probab=25.83 E-value=6.1e+02 Score=24.47 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=35.4
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEE
Q 025077 153 ENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKV 211 (258)
Q Consensus 153 ~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Ka 211 (258)
..+.++.-|++++++.+.++ +.+.-......+++-.+...+.+|..|.|-+...+.+
T Consensus 346 ~~~~~~~~h~l~~rl~~~l~--~~y~~~dy~~~~~r~d~~~~~~~gl~Y~~~~~~~~~l 402 (431)
T TIGR03016 346 TGGSVLLTHRLSPRLTANLG--LTYERNEGSGTNDQETDRTSVSAGLSYQLGENTTGSL 402 (431)
T ss_pred EeeeEEEEEecccccceeEE--EEEEEeeccCCCCcccceEEEEEEEEEEecCCcEEEE
Confidence 45889999999999655444 4443322111101222345789999999988766554
No 56
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=25.78 E-value=4.2e+02 Score=22.54 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=18.9
Q ss_pred EEEEEEEEeccceEEEEEEeeec
Q 025077 219 VGAHVQQSFWQKFSIAVSGETDI 241 (258)
Q Consensus 219 vg~~~~~~l~p~v~ltls~~iD~ 241 (258)
++..+...+.|++.|.++...+.
T Consensus 211 ~~~gv~y~~~~~~~l~~~~~~~~ 233 (248)
T PF13557_consen 211 LGPGVSYQLSPNLSLDAGVGRGL 233 (248)
T ss_pred EEEEEEEEEcCCeEEEEEEEeee
Confidence 88888889999888887777765
No 57
>PF11924 DUF3442: Protein of unknown function (DUF3442); InterPro: IPR024519 This domain is found in uncharacterised proteins, as well as intimin and invasin proteins. Intimin is believed to mediate adherence and it is necessary for the production of attaching and effacing lesions on tissue culture cells []. Invasin is a protein that allows enteric bacteria to penetrate cultured mammalian cells []. The entry of invasin in the cell is mediated by binding several beta-1 chain integrins [].; PDB: 4E1T_A 4E1S_A.
Probab=24.22 E-value=1.9e+02 Score=26.33 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred ceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEE
Q 025077 217 GKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256 (258)
Q Consensus 217 g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l 256 (258)
+.+|++|.+ +.+...+.+-+-+|+.--..-+++|+|+++
T Consensus 95 ~N~GlG~R~-~~~~~~~G~N~FyD~~~~~~~~R~~~G~E~ 133 (280)
T PF11924_consen 95 GNLGLGYRH-LNDNWMLGYNAFYDYDFSRNHQRLGLGAEY 133 (280)
T ss_dssp EEEEEEEEE-EETTEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEeEEEEe-cCCCeEEEeEEEEecCCCCCcceeeeeeEe
No 58
>TIGR01414 autotrans_barl outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus.
Probab=23.15 E-value=6.3e+02 Score=23.69 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=49.5
Q ss_pred CCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEE-------EEEc-CCceEEEEEEEEeccceEEEEE
Q 025077 165 PLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVK-------VRVN-TNGKVGAHVQQSFWQKFSIAVS 236 (258)
Q Consensus 165 ~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~K-------akvn-s~g~vg~~~~~~l~p~v~ltls 236 (258)
+.+...+|+++.+.+... .+..-...+.++..|++.....++ ..++ +...+++.++-++.+++.+.+.
T Consensus 331 ~s~~~~lG~r~~~~~~~~----~~~~~~p~~~~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 406 (429)
T TIGR01414 331 DSLQGRLGLRVGYQFDLG----TGRAVKPYLKANVLHEFKGGTGVRVNGVTIRTDFSGTRGEYGVGVNAKIKSNLSLYAD 406 (429)
T ss_pred CeEEEEEEEEEEeEeccC----CCcEEeEEEEEEEEEecCCCCeEEECCEEeeccCCCcEEEEeeEEEEEECCCEEEEEE
Confidence 344467788888765422 001114567888888886543332 1122 3446899999999998777766
Q ss_pred Eeeec-cCCCCCCeeEEEE
Q 025077 237 GETDI-RASSWIPNVRFGM 254 (258)
Q Consensus 237 ~~iD~-~~~~~~hK~Gl~l 254 (258)
.+... .+....+.+-+++
T Consensus 407 ~~~~~g~~~~~~~~~~~g~ 425 (429)
T TIGR01414 407 VDYQKGGKIYTDNQGNLGV 425 (429)
T ss_pred EEEecCCCCccceEEEEEE
Confidence 65554 2222234444444
No 59
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=21.97 E-value=5.4e+02 Score=22.52 Aligned_cols=20 Identities=15% Similarity=0.016 Sum_probs=11.7
Q ss_pred EEEEEEEeCCCcceeEEEEEEE
Q 025077 156 RASYYQELVPLTRTAVAAELKH 177 (258)
Q Consensus 156 ~aS~~~kv~~~~~~~vgae~~~ 177 (258)
+.-+-|++..- +-+.+|+.|
T Consensus 26 Ri~~sh~f~nG--~g~~~E~k~ 45 (218)
T PF06178_consen 26 RIKVSHRFDNG--FGFSVEAKW 45 (218)
T ss_dssp EEEEEEE-TTS--EEEEEEEEE
T ss_pred EEEEEEEccCC--cEEEEEEEe
Confidence 34445777776 556667766
No 60
>PRK14574 hmsH outer membrane protein; Provisional
Probab=20.70 E-value=1e+03 Score=25.26 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=69.0
Q ss_pred EEEEEeeecCceEEEEEEcc----cc--CeEEEEEEEEeCCCcceeEEEEEEEeecCCc--ccCCCCCCCceEEEEEEEe
Q 025077 131 YNAGLSFNTALFNASVNLND----KL--ENLRASYYQELVPLTRTAVAAELKHSFSNHR--SISDNIPIPTSLTVGFQHG 202 (258)
Q Consensus 131 ~~~~~~y~~~d~~~s~~l~~----~~--~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~--~~~~~~~~~~~~tiG~ky~ 202 (258)
.=+|+.|...+..+.+.+.. ++ -..++|+++.+|+. |.+++++..+...-. .+- +.-......++..|.
T Consensus 593 ~~~G~e~~~r~~~~~~e~~~~~~g~g~k~g~r~~~~~~~nD~--W~~~~~~~~~~~~tPlrA~~-~gv~~~~~~~~~~yr 669 (822)
T PRK14574 593 LRLGGEWTSRDHWVEGEISNQNYGNGNKVGARLSTWYDLNDH--WRVGGQVERLAKDTPLRALK-NKVTANSASAYVFWK 669 (822)
T ss_pred eeccceEEecCceEEEEeehhhcCCCCCcCceEEEEecCCCc--eeeeeeeecCCCCCCHHHHH-cCCcceecceEEEEE
Confidence 45778888888888885541 12 23778899999999 888888877432110 000 001135677888888
Q ss_pred eCCCCeEEEEEc----CCc----eEEEEEEEEec--cceEEEEEEeeec
Q 025077 203 LFPSTLVKVRVN----TNG----KVGAHVQQSFW--QKFSIAVSGETDI 241 (258)
Q Consensus 203 ld~~s~~Kakvn----s~g----~vg~~~~~~l~--p~v~ltls~~iD~ 241 (258)
.++...++..+. |+| .+++..+|+|. |..++.....++.
T Consensus 670 ~~e~r~~~~~~~~~~fsDgN~R~~~~~~~~~rl~~~p~~~~d~~~~~~~ 718 (822)
T PRK14574 670 ADDKRDAELSVTPSRFSDGNNRWEYEFNGRQRIWTGPYLTADFNLGLAA 718 (822)
T ss_pred EccceEEEeeeeecccCCCchhhhhhcceeEEeecCCeEEEecceEEee
Confidence 877766666553 233 38888889874 6666666555554
No 61
>PF01278 Omptin: Omptin family; InterPro: IPR000036 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belongs to the MEROPS family A26 (clan AF). The omptin family, comprises a number of novel outer membrane-associated serine proteases that are distinct from trypsin-like proteases in that they cleave polypeptides between two basically-charged amino acids []. The enzyme is sensitive to the serine protease inhibitor diisopropylfluoro-phosphate, to divalent cations such as Cu2+, Zn2+ and Fe2+ [], and is temperature regulated, activity decreasing at lower temperatures [, ]. Temperature regulation is most prominently shown in the Yersinia pestis coagulase/fibrinolysin protein, where coagulase activity is prevalent below 30 degrees Celsius, and fibrinolysin (protease) activity is prevalent above this point, the optimum temperature being 37 degrees []. It is possible that this assists in 'flea blockage' and transmission of the bacteria to animals []. The Escherichia coli OmpT has previously been classified as a serine protease with Ser(99) and His(212) as active site residues. The X-ray structure of the enzyme is inconsistent with this classification, and the involvement of a nucleophilic water molecule that is activated by the Asp(210)/His(212) catalytic dyad classifies this as a aspartic endopeptidase where activity is also strongly dependent on Asp(83) and Asp(85). Both may function in binding of the water molecule and/or oxyanion stabilisation. The proposed mechanism implies a novel proteolytic catalytic site [, ].; GO: 0004175 endopeptidase activity, 0006508 proteolysis, 0009279 cell outer membrane; PDB: 1I78_A 2X4M_C 2X55_A 2X56_A 4DCB_A.
Probab=20.30 E-value=6.9e+02 Score=23.05 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=37.5
Q ss_pred eEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCCC--eEEEEEcCCceEEEEEEEEeccce
Q 025077 154 NLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPST--LVKVRVNTNGKVGAHVQQSFWQKF 231 (258)
Q Consensus 154 ~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s--~~Kakvns~g~vg~~~~~~l~p~v 231 (258)
.+.+.++-...++.++ |+.+.++-... .=-+-|+.|+.+... -.-..+- ++..+..|+|++ +.-
T Consensus 112 dl~~~~~~~~~~~~~i--~~~aGyqy~~~----------~w~A~gG~y~Y~~~~~~~~~g~fP-~~~~~IsY~Q~f-~~p 177 (294)
T PF01278_consen 112 DLNIKYWFLKEPNYRI--GPMAGYQYTRF----------SWTAYGGYYQYSNGGFRDSSGTFP-DGEKGISYKQRF-PMP 177 (294)
T ss_dssp EEEEEEEEEEETTEEE--EEEEEEEEEEE----------EEEEES-EEEETTTTSS-EEEE---TT-CEEEEEEEE-EEE
T ss_pred eeeeeEEEEcCCCEEE--EEEcceEEEEe----------eEEeCCceEECCCCCcccccccCC-CCcceeeeeeEE-EEE
Confidence 4667778888888444 44444432111 111234445554444 1233343 355799999999 455
Q ss_pred EEEEEEeee
Q 025077 232 SIAVSGETD 240 (258)
Q Consensus 232 ~ltls~~iD 240 (258)
-+.|.++.-
T Consensus 178 yiGL~~~yr 186 (294)
T PF01278_consen 178 YIGLAGSYR 186 (294)
T ss_dssp EEEEEEEEE
T ss_pred EEeEEEEEE
Confidence 555555553
Done!