Query 025077
Match_columns 258
No_of_seqs 135 out of 429
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 100.0 2.3E-62 8E-67 446.2 32.2 234 3-258 14-295 (295)
2 3emn_X Voltage-dependent anion 98.1 0.0022 7.6E-08 57.7 24.3 174 43-240 39-223 (295)
3 3bs0_A TODX; beta barrel, oute 90.3 11 0.00037 34.7 18.3 85 152-238 278-397 (439)
4 3pgu_A Long-chain fatty acid t 88.2 16 0.00054 33.8 16.2 84 152-237 272-387 (427)
5 3nsg_A Outer membrane protein 86.8 17 0.00057 32.5 19.7 142 111-256 147-339 (341)
6 3dwo_X Probable outer membrane 85.5 23 0.00079 32.9 17.6 86 152-239 285-403 (451)
7 3bry_A TBUX; beta barrel, oute 85.1 23 0.00077 32.4 17.3 87 152-240 278-401 (441)
8 2por_A Porin; HET: C8E; 1.80A 83.5 22 0.00076 31.0 17.3 142 111-256 126-299 (301)
9 3pgu_A Long-chain fatty acid t 82.4 30 0.001 31.8 17.3 135 101-255 274-418 (427)
10 3prn_A Porin; integral membran 68.3 64 0.0022 28.5 19.0 117 128-256 161-289 (289)
11 2wjr_A Probable N-acetylneuram 65.7 11 0.00037 32.0 5.8 29 151-179 52-80 (214)
12 1pho_A Phosphoporin; outer mem 61.6 79 0.0027 27.3 19.9 142 111-256 143-328 (330)
13 3vy8_X Outer membrane protein; 56.5 1.1E+02 0.0038 27.4 14.3 127 111-241 156-335 (355)
14 2fgq_X OMP32, outer membrane p 53.4 1.1E+02 0.0039 26.6 16.5 124 111-239 146-294 (332)
15 1uyn_X NALP; autotransporter, 47.0 1.4E+02 0.0048 25.7 10.9 63 169-239 210-289 (308)
16 2zfg_A Outer membrane protein 43.0 1.7E+02 0.0057 25.5 20.0 142 111-256 149-338 (340)
17 3dwo_X Probable outer membrane 42.4 2E+02 0.007 26.3 23.4 138 101-256 287-441 (451)
18 3vy8_X Outer membrane protein; 39.6 2.1E+02 0.007 25.6 13.7 71 127-202 270-354 (355)
19 2lme_A Adhesin YADA; trimeric 36.7 71 0.0024 23.6 5.6 23 192-214 66-88 (105)
20 2por_A Porin; HET: C8E; 1.80A 30.4 2.6E+02 0.0089 24.0 13.1 40 153-202 261-300 (301)
21 2j1n_A Outer membrane protein 28.8 2.9E+02 0.0098 24.0 20.3 124 129-256 178-344 (346)
22 3qra_A AIL, attachment invasio 28.1 2.1E+02 0.0072 22.2 12.4 23 217-239 116-138 (157)
23 3kvn_X Esterase ESTA; beta bar 23.2 4.8E+02 0.017 24.7 18.8 64 169-240 534-614 (632)
24 3a2s_X Outer membrane protein 20.7 4.2E+02 0.014 23.0 13.6 21 218-238 311-331 (355)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=100.00 E-value=2.3e-62 Score=446.20 Aligned_cols=234 Identities=20% Similarity=0.314 Sum_probs=219.9
Q ss_pred CCCCccccccccccccccCCCCCC-CCeeE------------------------------EEeecc----------ccce
Q 025077 3 NSPGLYIDIGKKARDLLYKDYGDK-QPANH------------------------------FRYDCV----------DSNF 41 (258)
Q Consensus 3 ~~P~~y~DlgK~arDll~k~y~~~-~k~~~------------------------------~~~~~~----------~~~l 41 (258)
++||+|+||||.|||||+|||+|+ +||++ |+++++ +++|
T Consensus 14 ~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~l 93 (295)
T 3emn_X 14 AVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTL 93 (295)
T ss_dssp CSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSCE
T ss_pred CCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCcE
Confidence 579999999999999999999999 88777 666653 4559
Q ss_pred eEEEEEcc-CCCCeEEEEEEEc-cC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEEeccceee
Q 025077 42 DVSCQCDA-IVPGLSTAFRSII-PD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVAGNTVLSL 115 (258)
Q Consensus 42 ~t~i~~~~-~~~Glk~~~~~~~-p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~g~~~~~l 115 (258)
.++|++++ ++||||+++++.+ |+ ++|+++||+||+++++++++++. .+|+++.|+|+|+++|++
T Consensus 94 ~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~----------~~P~i~~s~v~g~~~~~~ 163 (295)
T 3emn_X 94 GTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDI----------AGPSIRGALVLGYEGWLA 163 (295)
T ss_dssp EEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECT----------TCCEEEEEEEEEETTEEE
T ss_pred EEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEecc----------CCCEEEEEEEEeeCCEEE
Confidence 99999999 8999999999996 76 57999999999999999999964 499999999999999999
Q ss_pred eEEEEEeccCCcceeEEEEEeeecCceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceE
Q 025077 116 GTDAAFDISTRTFSNYNAGLSFNTALFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSL 195 (258)
Q Consensus 116 G~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~ 195 (258)
|+|+.||++++++++|+++++|+.+||+++++++| ++.+++|||||++|+ +++|+|+.|+++.+ ++++
T Consensus 164 G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~--~~~g~e~~~~~~~~---------~~~~ 231 (295)
T 3emn_X 164 GYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKK--LETAVNLAWTAGNS---------NTRF 231 (295)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSS--EEEEEEEEEETTEE---------EEEE
T ss_pred EEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCc--eEEEEEEEEeccCC---------CcEE
Confidence 99999999999999999999999999999999997 789999999999999 89999999999877 9999
Q ss_pred EEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeeeccCCC-CCCeeEEEEEEeC
Q 025077 196 TVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETDIRASS-WIPNVRFGMAFSS 258 (258)
Q Consensus 196 tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD~~~~~-~~hK~Gl~l~l~~ 258 (258)
+||+||++|+++++||||||+|+|+++|||+|+|++++++|++||+++++ +.||||++|+||.
T Consensus 232 tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~ 295 (295)
T 3emn_X 232 GIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 295 (295)
T ss_dssp EEEEEECCSSSEEEEEEEETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred EEEEEEEcCCCCEEEEEECCCCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999986 6899999999984
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=98.08 E-value=0.0022 Score=57.73 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=120.7
Q ss_pred EEEEEccC-CCCeEEEEEEE-ccC----CCeeEEEEeeeceeeeEEeeecccccccccccccCCeEEEEEEE---eccce
Q 025077 43 VSCQCDAI-VPGLSTAFRSI-IPD----SGGVELRYLHDYAGFTAGIGLKAGRHNHLQSVGLDRIVKFSVVA---GNTVL 113 (258)
Q Consensus 43 t~i~~~~~-~~Glk~~~~~~-~p~----s~k~~~qy~~~~~~~~~~~~l~~~~~~~~~~~~~~P~v~~s~v~---g~~~~ 113 (258)
.++++.-. ..|+..+.... -|+ +|.++.+|+....+++.+..... .|.+.. ...+ ..+++
T Consensus 39 ~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t----------~n~l~t-~i~~~~~l~~Gl 107 (295)
T 3emn_X 39 IKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNT----------DNTLGT-EITVEDQLARGL 107 (295)
T ss_dssp EEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEET----------TSCEEE-EEEEESSSSTTE
T ss_pred EEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeC----------CCcEEE-EEEEccccCCce
Confidence 45555543 46788777665 463 67899999999988887777665 244332 2222 25777
Q ss_pred eeeEEEEEeccCCcceeEEEEEeeecCceEEEEEEcc--ccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCC
Q 025077 114 SLGTDAAFDISTRTFSNYNAGLSFNTALFNASVNLND--KLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPI 191 (258)
Q Consensus 114 ~lG~e~~yd~~~~~~~~~~~~~~y~~~d~~~s~~l~~--~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~ 191 (258)
-+-.+..|.+..+ -....+.+.|..+.+.+...+.- .+-.+.+|..-- .+. +.+|+|+.|+...+.
T Consensus 108 k~~~~~~~~P~~~-~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g-~~~--~~~G~e~~yd~~~~~-------- 175 (295)
T 3emn_X 108 KLTFDSSFSPNTG-KKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG-YEG--WLAGYQMNFETSKSR-------- 175 (295)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE-ETT--EEEEEEEEEETTTTE--------
T ss_pred EEEEEEEECCCCC-CcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe-eCC--EEEEEEEEEEeCCCC--------
Confidence 7778888865443 23567778999999999555422 234677765332 367 899999999986551
Q ss_pred CceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEEEEEEeee
Q 025077 192 PTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSIAVSGETD 240 (258)
Q Consensus 192 ~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~ltls~~iD 240 (258)
-+...+|.+|.- ++..+-+++++...+.+.|-|++.|++.+++-...+
T Consensus 176 ~t~~n~~~gY~~-~d~~~s~~l~~~~~~~aSy~qkvs~~~~~g~e~~~~ 223 (295)
T 3emn_X 176 VTQSNFAVGYKT-DEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWT 223 (295)
T ss_dssp EEEEEEEEEEEC-SSEEEEEEEETTTEEEEEEEEECSSSEEEEEEEEEE
T ss_pred eeeEEEEEEEcC-CCEEEEEEECCCCeEEEEEEEECCCceEEEEEEEEe
Confidence 456888999984 788888999998899999999999976544433333
No 3
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=90.32 E-value=11 Score=34.68 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=58.0
Q ss_pred cCeEEEEEEEEeCCCcceeEEEEEEEeecCC-c---------c-------cCCCCCCCceEEEEEEEeeCCCCeEEEEEc
Q 025077 152 LENLRASYYQELVPLTRTAVAAELKHSFSNH-R---------S-------ISDNIPIPTSLTVGFQHGLFPSTLVKVRVN 214 (258)
Q Consensus 152 ~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~-~---------~-------~~~~~~~~~~~tiG~ky~ld~~s~~Kakvn 214 (258)
...+.++..|+++++ +.+.+++.|..-+. - . ...+-.....+.||+.|++.+..++||=++
T Consensus 278 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~ 355 (439)
T 3bs0_A 278 PASLTLGLAHQFNER--WVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYS 355 (439)
T ss_dssp CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEE
T ss_pred CcEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeE
Confidence 467999999999999 88888888853211 0 0 000112245789999999998899998542
Q ss_pred ------------------CCceEEEEEEEEeccceEEEEEEe
Q 025077 215 ------------------TNGKVGAHVQQSFWQKFSIAVSGE 238 (258)
Q Consensus 215 ------------------s~g~vg~~~~~~l~p~v~ltls~~ 238 (258)
+...++++...++.+++.+.++.+
T Consensus 356 yd~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~id~a~~ 397 (439)
T 3bs0_A 356 YAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAIS 397 (439)
T ss_dssp ECC------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEE
T ss_pred cccCCCCcccccccccCccceEEEeeeEEEcCCCcEEEEEEE
Confidence 223467777777777776666654
No 4
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=88.25 E-value=16 Score=33.78 Aligned_cols=84 Identities=13% Similarity=0.018 Sum_probs=53.0
Q ss_pred cCeEEEEEEEEeCCCcceeEEEEEEEeecCCc-c-------------cCCCCCCCceEEEEEEEeeCCCCeEEEEEc--C
Q 025077 152 LENLRASYYQELVPLTRTAVAAELKHSFSNHR-S-------------ISDNIPIPTSLTVGFQHGLFPSTLVKVRVN--T 215 (258)
Q Consensus 152 ~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~-~-------------~~~~~~~~~~~tiG~ky~ld~~s~~Kakvn--s 215 (258)
.+.+.++..|+++++ +.+.+++.|..-+.- . ...+-.....+.+|+.|++.+..++||=+. +
T Consensus 272 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~~~~~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~yd~ 349 (427)
T 3pgu_A 272 PEMWEVSGYNRVDPQ--WAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDD 349 (427)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEESSCSCEEEEEETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEEEEE
T ss_pred CcEEEEEEEEecCCC--EEEEEEEEEEEeccccceEEEcCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEEEcc
Confidence 367999999999999 788889988532110 0 000111246788999999888888887332 1
Q ss_pred C----------------ceEEEEEEEEeccceEEEEEE
Q 025077 216 N----------------GKVGAHVQQSFWQKFSIAVSG 237 (258)
Q Consensus 216 ~----------------g~vg~~~~~~l~p~v~ltls~ 237 (258)
. -.++++...++.+++++.++.
T Consensus 350 spv~~~~~~~~~P~~d~~~~s~G~~y~~~~~~~id~ay 387 (427)
T 3pgu_A 350 SPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGV 387 (427)
T ss_dssp CCCCGGGCBTTBCCSCEEEEEEEEEEESSSSEEEEEEE
T ss_pred CCCCcccccccccCCCCEEEEEeEEEEcCCCcEEEEEE
Confidence 1 125666666666665555554
No 5
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=86.77 E-value=17 Score=32.46 Aligned_cols=142 Identities=10% Similarity=0.016 Sum_probs=87.8
Q ss_pred cceeeeEEEEEeccC------CcceeEEEEEeeecCceEEEEEEcc---------------ccCeEEEEEEEEeCCCcce
Q 025077 111 TVLSLGTDAAFDIST------RTFSNYNAGLSFNTALFNASVNLND---------------KLENLRASYYQELVPLTRT 169 (258)
Q Consensus 111 ~~~~lG~e~~yd~~~------~~~~~~~~~~~y~~~d~~~s~~l~~---------------~~~~~~aS~~~kv~~~~~~ 169 (258)
.+|.+++...+.-.. ..-..|.+++.|....+.+.+-... +.+.+.+.--..+.+ +
T Consensus 147 ~G~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~ 223 (341)
T 3nsg_A 147 DGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANN---V 223 (341)
T ss_dssp SSEEEEEEEECCBCSSSCGGGCBCSEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETT---E
T ss_pred CCEEEEEEEEeCCCCCccccccCCceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCC---E
Confidence 356666666664322 2334689999999999988876532 113345555556655 4
Q ss_pred eEEEEEEEeecCCcccCC-------CCCCCceEEEEEEEeeCCCCeEEEE-----EcC----------CceEEEEEEEEe
Q 025077 170 AVAAELKHSFSNHRSISD-------NIPIPTSLTVGFQHGLFPSTLVKVR-----VNT----------NGKVGAHVQQSF 227 (258)
Q Consensus 170 ~vgae~~~~~~~~~~~~~-------~~~~~~~~tiG~ky~ld~~s~~Kak-----vns----------~g~vg~~~~~~l 227 (258)
.+++..++.-... ..+. ...+...+++|++|.+.|...+++- .++ .-++.+.++..|
T Consensus 224 ~l~a~Y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~L 302 (341)
T 3nsg_A 224 YLAAVYAETRNMS-IVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYF 302 (341)
T ss_dssp EEEEEEEEESSCC-CEECTTTCCEECCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECC
T ss_pred EEEEEEEEEEecc-ccCcccccccccceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEe
Confidence 4565555432111 0000 1123568999999999997666652 221 235889999999
Q ss_pred ccceEEEEEEeeeccC--------CCCCCeeEEEEEE
Q 025077 228 WQKFSIAVSGETDIRA--------SSWIPNVRFGMAF 256 (258)
Q Consensus 228 ~p~v~ltls~~iD~~~--------~~~~hK~Gl~l~l 256 (258)
.+...+=+...++.-+ .+....+++||..
T Consensus 303 SKrT~lY~~y~~~~~~~~~~~~~~~~~dd~~~vGlry 339 (341)
T 3nsg_A 303 NKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITY 339 (341)
T ss_dssp CSSEEEEEEEEEECCCCCSSCTTTTCSSCEEEEEEEE
T ss_pred cCCEEEEEEEEEecccCccccccccCcCCEEEEEEEE
Confidence 9998888877776521 2245789999864
No 6
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=85.49 E-value=23 Score=32.87 Aligned_cols=86 Identities=10% Similarity=-0.016 Sum_probs=58.2
Q ss_pred cCeEEEEEEEEeCCCcceeEEEEEEEeecCCc---c----------cCCCCCCCceEEEEEEEeeCCCCeEEEEEc--C-
Q 025077 152 LENLRASYYQELVPLTRTAVAAELKHSFSNHR---S----------ISDNIPIPTSLTVGFQHGLFPSTLVKVRVN--T- 215 (258)
Q Consensus 152 ~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~---~----------~~~~~~~~~~~tiG~ky~ld~~s~~Kakvn--s- 215 (258)
.+.+.++..|+++++ +.+.+++.|.--+.- . ...+-.....+++|+.|++.+..++||=+. +
T Consensus 285 P~~~~lg~~~~~~~~--~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG~~yd~s 362 (451)
T 3dwo_X 285 PAYASLDWVHQFNDR--LSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGVAYDQT 362 (451)
T ss_dssp CCEEEEEEEEECSSS--EEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEEEEEECC
T ss_pred CcEEEEEEEEEeCCC--EEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEEEEEccC
Confidence 467999999999999 788888888642210 0 000112356899999999988889988332 1
Q ss_pred ---------------CceEEEEEEEEec--cceEEEEEEee
Q 025077 216 ---------------NGKVGAHVQQSFW--QKFSIAVSGET 239 (258)
Q Consensus 216 ---------------~g~vg~~~~~~l~--p~v~ltls~~i 239 (258)
...++++...++. +++.|.++...
T Consensus 363 p~~~~~~~~~~P~~~~~~~s~G~~y~~~~~~~~~ld~~y~y 403 (451)
T 3dwo_X 363 PTHNATRDPRIPDGDRYFASLGAGYRFQSMPELSIDAAYSR 403 (451)
T ss_dssp SCCTTTCCSSSCCCCEEEEEEEEEEECSSSSSEEEEEEEEE
T ss_pred CCCcccccccccCCCCEEEEEeEEEEecCCCCeEEEEEEEE
Confidence 2236777777787 77777666543
No 7
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=85.08 E-value=23 Score=32.38 Aligned_cols=87 Identities=9% Similarity=0.046 Sum_probs=59.1
Q ss_pred cCeEEEEEEEEeCCCcceeEEEEEEEeecCC--c----ccC-------------CCCCCCceEEEEEEEeeCCCCeEEEE
Q 025077 152 LENLRASYYQELVPLTRTAVAAELKHSFSNH--R----SIS-------------DNIPIPTSLTVGFQHGLFPSTLVKVR 212 (258)
Q Consensus 152 ~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~--~----~~~-------------~~~~~~~~~tiG~ky~ld~~s~~Kak 212 (258)
...+.++..|+++++ +.+.+++.|..-+. . .+. .+-.....+.+|+.|++.+..++||=
T Consensus 278 P~~~~~g~~~~~~~~--~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG 355 (441)
T 3bry_A 278 PAQLTVGISHQFNDQ--LSVSADYQRVFWSSVMKDMNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRGG 355 (441)
T ss_dssp CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCSEEEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEEE
T ss_pred ccEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEEe
Confidence 467999999999998 78888888853111 0 000 01122558899999999888899984
Q ss_pred Ec------------------CCceEEEEEEEEeccceEEEEEEeee
Q 025077 213 VN------------------TNGKVGAHVQQSFWQKFSIAVSGETD 240 (258)
Q Consensus 213 vn------------------s~g~vg~~~~~~l~p~v~ltls~~iD 240 (258)
+. +...++++...++.+.+.|.++...-
T Consensus 356 ~~yd~s~~~~~~~~~~~P~~~~~~~s~G~gy~~~~~~~ld~ay~y~ 401 (441)
T 3bry_A 356 FHYAQEAIPGNMLLAVVPATPTTSLTGGVSYAIGKNDVIDFALSVA 401 (441)
T ss_dssp EEEEEC---------------CEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred eecccCCCCcccccccccCcCceEEEeeeEEEcCCCeEEEEEEEEE
Confidence 32 23346777777787777777776653
No 8
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=83.47 E-value=22 Score=31.01 Aligned_cols=142 Identities=8% Similarity=-0.008 Sum_probs=80.2
Q ss_pred cceeeeEEEEEecc----CCcceeEEEEEeeecCceEEEEEEccc----------cCeEEEEEEEEeCCCcceeEEEEEE
Q 025077 111 TVLSLGTDAAFDIS----TRTFSNYNAGLSFNTALFNASVNLNDK----------LENLRASYYQELVPLTRTAVAAELK 176 (258)
Q Consensus 111 ~~~~lG~e~~yd~~----~~~~~~~~~~~~y~~~d~~~s~~l~~~----------~~~~~aS~~~kv~~~~~~~vgae~~ 176 (258)
.+|.+++...+... ...-..|.+++.|...++.+.+-.... .+.+.++.-..+.+ +.+++...
T Consensus 126 gGf~~~a~Y~~~~~~~~~~~~~~~~~~~~~Y~~G~l~v~a~Y~~~~~~~~~~~~~~~~~~lgasY~~g~---~~l~~~Y~ 202 (301)
T 2por_A 126 GAFSVAASMSDGKVGETSEDDAQEMAVAAAYTFGNYTVGLGYEKIDSPDTALMADMEQLELAAIAKFGA---TNVKAYYA 202 (301)
T ss_dssp TTEEEEEEECCSBSTTSSCBCCEEEEEEEEEEETTEEEEEEEEEEECSCTTTSCCEEEEEEEEEEEETT---EEEEEEEE
T ss_pred CCEEEEEEEEeCCCCCCCCCCCcEEEEEEEEEeCCeEEEEEEEEccCCCccccccccEEEEEEEEEEcc---EEEEEEEE
Confidence 46676666666421 122356889999998888888865421 12344444446665 23333332
Q ss_pred EeecCCc--------ccCC---CCCCCceEEEEE--EEeeCCCCeEEEEEc-----CCceEEEEEEEEeccceEEEEEEe
Q 025077 177 HSFSNHR--------SISD---NIPIPTSLTVGF--QHGLFPSTLVKVRVN-----TNGKVGAHVQQSFWQKFSIAVSGE 238 (258)
Q Consensus 177 ~~~~~~~--------~~~~---~~~~~~~~tiG~--ky~ld~~s~~Kakvn-----s~g~vg~~~~~~l~p~v~ltls~~ 238 (258)
..-.... .+.. ...+.+.+.+|+ +|.+.+...+++... +...+++.+++.|.|++++-.+-.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y~ 282 (301)
T 2por_A 203 DGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIA 282 (301)
T ss_dssp EEEEEHHHHHHHTTCCCCSSCCCEEEEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred eccCccccccccccccccccccccccCceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEEE
Confidence 2110000 0000 001145689999 999977666777653 235789999999999988866654
Q ss_pred eeccCCCCCCeeEEEEEE
Q 025077 239 TDIRASSWIPNVRFGMAF 256 (258)
Q Consensus 239 iD~~~~~~~hK~Gl~l~l 256 (258)
.+-.+ +..-.+-+|+.+
T Consensus 283 ~~~~~-~~~~~~~~Gvr~ 299 (301)
T 2por_A 283 DNDLP-NSDMVADLGVKF 299 (301)
T ss_dssp EECSS-SCCCEEEEEEEE
T ss_pred eccCC-CCceeEEEEeEE
Confidence 44311 112456666554
No 9
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=82.42 E-value=30 Score=31.83 Aligned_cols=135 Identities=12% Similarity=-0.037 Sum_probs=73.1
Q ss_pred eEEEEEEEe-ccceeeeEEEEEeccCCcceeEEEEEeeecCce--EEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEE
Q 025077 101 IVKFSVVAG-NTVLSLGTDAAFDISTRTFSNYNAGLSFNTALF--NASVNLNDKLENLRASYYQELVPLTRTAVAAELKH 177 (258)
Q Consensus 101 ~v~~s~v~g-~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~d~--~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~ 177 (258)
.+..+.... .++|++.+++.|..=+ ++....+ .+....- .......| ...+++..-+++++++.+-+| +.|
T Consensus 274 ~~~~g~~~~~~~~~~l~~d~~~~~WS-~~~~~~~--~~~~g~~~~~~~~~~~D-~~~~~lG~eY~~~~~~~lRaG--~~y 347 (427)
T 3pgu_A 274 MWEVSGYNRVDPQWAIHYSLAYTSWS-QFQQLKA--TSTSGDTLFQKHEGFKD-AYRIALGTTYYYDDNWTFRTG--IAF 347 (427)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEES-SCSCEEE--EEETTEEEEEECCCCEE-EEEEEEEEEEECSSSEEEEEE--EEE
T ss_pred EEEEEEEEecCCCEEEEEEEEEEEec-cccceEE--EcCCCcccccccCCcee-ccEEEEEEEEEcCCCEEEEEE--EEE
Confidence 445544443 6889999999885311 1222222 1111111 11112233 356788888999999555555 444
Q ss_pred eecC--Cc--ccCCCCCCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEE---EEEEeeeccCCCCCCee
Q 025077 178 SFSN--HR--SISDNIPIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSI---AVSGETDIRASSWIPNV 250 (258)
Q Consensus 178 ~~~~--~~--~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~l---tls~~iD~~~~~~~hK~ 250 (258)
.-.. .. .+.........+++|+.|++.+. ..|.++|++......++ .+.++.+.+ .+-+
T Consensus 348 d~spv~~~~~~~~~P~~d~~~~s~G~~y~~~~~----------~~id~ay~y~~~~~~~~~~~~~~~~~~~~----a~~~ 413 (427)
T 3pgu_A 348 DDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKD----------ASVDVGVSYMHGQSVKINEGPYQFESEGK----AWLF 413 (427)
T ss_dssp EECCCCGGGCBTTBCCSCEEEEEEEEEEESSSS----------EEEEEEEEEEEECCEEEEETTEEEEEEEE----EEEE
T ss_pred ccCCCCcccccccccCCCCEEEEEeEEEEcCCC----------cEEEEEEEEEecCcceEeccceEEEEEEE----EEEE
Confidence 3322 10 11111123567999999998653 46677777777666666 344444332 4667
Q ss_pred EEEEE
Q 025077 251 RFGMA 255 (258)
Q Consensus 251 Gl~l~ 255 (258)
|+++.
T Consensus 414 g~~~~ 418 (427)
T 3pgu_A 414 GTNFN 418 (427)
T ss_dssp EEEEE
T ss_pred Eeecc
Confidence 77664
No 10
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=68.31 E-value=64 Score=28.54 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=73.8
Q ss_pred ceeEEEEEeeecCceEEEEEEc--cc----cCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEE
Q 025077 128 FSNYNAGLSFNTALFNASVNLN--DK----LENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQH 201 (258)
Q Consensus 128 ~~~~~~~~~y~~~d~~~s~~l~--~~----~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky 201 (258)
-..+.+++.|+...+.+++-.+ .. .+.+.++.=..+.+. +.++ +.|.-.. + ......++|+..|
T Consensus 161 ~d~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~--~~v~--~~Y~d~~-----d-~~~~~~~gl~~~Y 230 (289)
T 3prn_A 161 TEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDA--GTVG--LNWYDNG-----L-STAGDQVTLYGNY 230 (289)
T ss_dssp CCEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSS--EEEE--EEEEECT-----T-STTCSEEEEEEEE
T ss_pred cceEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCC--eEEE--EEEEccc-----c-ccCCceEEEEEEe
Confidence 3468888888888887777654 10 145666666666633 3333 3332110 0 0014579999999
Q ss_pred eeCCCCeEEEEEcCC------ceEEEEEEEEeccceEEEEEEeeeccCCCCCCeeEEEEEE
Q 025077 202 GLFPSTLVKVRVNTN------GKVGAHVQQSFWQKFSIAVSGETDIRASSWIPNVRFGMAF 256 (258)
Q Consensus 202 ~ld~~s~~Kakvns~------g~vg~~~~~~l~p~v~ltls~~iD~~~~~~~hK~Gl~l~l 256 (258)
.+ ..++|++.+.+. ..-++.+++.|..+.+|..+-.=+- +-+...-+|+.++|
T Consensus 231 ~v-~a~tv~a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~~-~~~~~ad~Gv~F~F 289 (289)
T 3prn_A 231 AF-GATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGF-ANETVADVGVRFDF 289 (289)
T ss_dssp EE-TTEEEEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEECT-TCCEEEEEEEEEEC
T ss_pred Ee-cCeEEEEEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEcC-CCceEEeeeeEeeC
Confidence 99 789999986542 3679999999999988877765222 11123566766654
No 11
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=65.67 E-value=11 Score=31.98 Aligned_cols=29 Identities=10% Similarity=-0.089 Sum_probs=22.8
Q ss_pred ccCeEEEEEEEEeCCCcceeEEEEEEEee
Q 025077 151 KLENLRASYYQELVPLTRTAVAAELKHSF 179 (258)
Q Consensus 151 ~~~~~~aS~~~kv~~~~~~~vgae~~~~~ 179 (258)
++.++.+||..|+++++-++.|..+.+..
T Consensus 52 ng~E~~~~Y~~k~~d~~~l~PG~~~~~~s 80 (214)
T 2wjr_A 52 NDVQVEVNYAIKLDDQWTVRPGMLTHFSS 80 (214)
T ss_dssp CEEEEEEEECEESSSSEEEEEEEEEEEET
T ss_pred ccEEEEEEEEEEcCCCEEEecceEEEecC
Confidence 46899999999999997777776655543
No 12
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=61.62 E-value=79 Score=27.28 Aligned_cols=142 Identities=11% Similarity=0.006 Sum_probs=79.9
Q ss_pred cceeeeEEEEEeccC-----CcceeEEEEEeeecC--ceEEEEEEccc----------------cCeEEEEEEEEeCCCc
Q 025077 111 TVLSLGTDAAFDIST-----RTFSNYNAGLSFNTA--LFNASVNLNDK----------------LENLRASYYQELVPLT 167 (258)
Q Consensus 111 ~~~~lG~e~~yd~~~-----~~~~~~~~~~~y~~~--d~~~s~~l~~~----------------~~~~~aS~~~kv~~~~ 167 (258)
.+|.++++..+.-.. ..-..|.+++.|..+ .|.+.+..... .+.+.+..-..+.+
T Consensus 143 ~G~~~~~~y~~~~~~~~~~~~~~~~~~~~~~Y~~g~~~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~-- 220 (330)
T 1pho_A 143 DGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANN-- 220 (330)
T ss_dssp TTEEEEEEEECCBCSSCSTTCBCSEEEEEEEEEETTTTEEEEEEEEEEECCGGGTTSSSSCSSEEEEEEEEEEEEETT--
T ss_pred CceEEEEEEecCCCCCccccccCCeEEEEEEEEcCCCCEEEEEEEEEecccccccccccCCccchheEEEEEEEEeCC--
Confidence 456666665553221 123468999999988 88877654211 12344454556655
Q ss_pred ceeEEEEEEEeecCCcccC-CCCCCCceEEEEEEEeeCCCCeEEE-----EEcC---------CceEEEEEEEEeccceE
Q 025077 168 RTAVAAELKHSFSNHRSIS-DNIPIPTSLTVGFQHGLFPSTLVKV-----RVNT---------NGKVGAHVQQSFWQKFS 232 (258)
Q Consensus 168 ~~~vgae~~~~~~~~~~~~-~~~~~~~~~tiG~ky~ld~~s~~Ka-----kvns---------~g~vg~~~~~~l~p~v~ 232 (258)
+.+++...+.-... ..+ ....+...+++|++|.+.+...+.+ +.++ ..++.+.++..|.+...
T Consensus 221 -~~l~a~Y~~~~~~~-~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~ 298 (330)
T 1pho_A 221 -IYLATFYSETRKMT-PITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMS 298 (330)
T ss_dssp -EEEEEEEEEEESCS-CCSSSSCSEEEEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEEEEEEEESSSSEE
T ss_pred -EEEEEEEEeeEEcc-CCCCCcceeeEEEEEEEEEeecCCeeEEEEEEEecccCccCCCCcceEEEEEEEEEEEecCCEE
Confidence 34555444422111 000 0011256799999999988765654 2221 23578999999999987
Q ss_pred EEEEEeeec-cC-----CCCCCeeEEEEEE
Q 025077 233 IAVSGETDI-RA-----SSWIPNVRFGMAF 256 (258)
Q Consensus 233 ltls~~iD~-~~-----~~~~hK~Gl~l~l 256 (258)
+-....... +. .....-+++|+..
T Consensus 299 lY~~y~~~~~~~~~~~~~~~~~~~~vGirh 328 (330)
T 1pho_A 299 AFVDYKINQLDSDNKLNINNDDIVAVGMTY 328 (330)
T ss_dssp EEEEEEEECCCSSCTTCCCCCCEEEEEEEE
T ss_pred EEEEEEEccccCccccCCCCCcEEEEEEEE
Confidence 766554432 11 1223567777653
No 13
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=56.46 E-value=1.1e+02 Score=27.35 Aligned_cols=127 Identities=14% Similarity=0.050 Sum_probs=73.8
Q ss_pred cceeeeEEEEEeccC----------CcceeEEEEEeeecCceEEEEE--Ecc----------------------ccCeEE
Q 025077 111 TVLSLGTDAAFDIST----------RTFSNYNAGLSFNTALFNASVN--LND----------------------KLENLR 156 (258)
Q Consensus 111 ~~~~lG~e~~yd~~~----------~~~~~~~~~~~y~~~d~~~s~~--l~~----------------------~~~~~~ 156 (258)
.+|.++++..+.-.. ..-..|.+++.|....+.+.+- ... +.+.+.
T Consensus 156 ~G~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~~a~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (355)
T 3vy8_X 156 AGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHR 235 (355)
T ss_dssp TTEEEEEEEECHHHHCSTTTTSCCSCCCCEEEEEEEEEETTEEEEEEEEEEEEEEECTTSCBCCTTCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEcCCCCCCccccccccCCCcEEEEEEEEecCCEEEEEEhhehhccccccccccccccccccccCCcceEEE
Confidence 366777776663211 2234689999999888877665 221 123455
Q ss_pred EEEEEEeCCCcceeEEEEEEEeecCCcccC---CCCCCCceEEEEEEEeeCCCCeEEE--------EEcC-------Cce
Q 025077 157 ASYYQELVPLTRTAVAAELKHSFSNHRSIS---DNIPIPTSLTVGFQHGLFPSTLVKV--------RVNT-------NGK 218 (258)
Q Consensus 157 aS~~~kv~~~~~~~vgae~~~~~~~~~~~~---~~~~~~~~~tiG~ky~ld~~s~~Ka--------kvns-------~g~ 218 (258)
+..-+.+++ +.+++.....-......+ ....+...++++++|.+++ ..+++ |+++ .-.
T Consensus 236 lga~Yd~~~---~~laa~Y~~~~~~~~~~~~~~~~~~k~~~~~l~a~Y~~g~-~~~~~sY~~~~k~k~~~~~~~~~~~~~ 311 (355)
T 3vy8_X 236 VVAGYDAND---LYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGN-VTPRVSYAHGFKAKVNGVKDANYQYDQ 311 (355)
T ss_dssp EEEEEEETT---EEEEEEEEEEEEEECSSSTTTTCEEEEEEEEEEEEECBTT-EEEEEEEEEECCEEETTEEEGGGCEEE
T ss_pred EEEEEEecC---EEEEEEEEEeccccccccccccccceeeEEEEEEEEEcCC-eEEEEEEEEeccccccccccCCCcceE
Confidence 555566664 345554443211000000 0011256899999999987 55554 3332 235
Q ss_pred EEEEEEEEeccceEEEEEE-eeec
Q 025077 219 VGAHVQQSFWQKFSIAVSG-ETDI 241 (258)
Q Consensus 219 vg~~~~~~l~p~v~ltls~-~iD~ 241 (258)
+.+.++..|.+...+=+.. .++.
T Consensus 312 ~~vG~~Y~lsKrt~~Ya~y~~~~n 335 (355)
T 3vy8_X 312 VIVGADYDFSKRTSALVSAGWLKQ 335 (355)
T ss_dssp EEEEEEEESSSSEEEEEEEEEEEE
T ss_pred EEEEEEEEcCCCeEEEEEEEEEEc
Confidence 8999999999997766655 4554
No 14
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=53.37 E-value=1.1e+02 Score=26.59 Aligned_cols=124 Identities=10% Similarity=0.023 Sum_probs=73.7
Q ss_pred cceeeeEEEEEeccC------CcceeEEEEEeeecCceEEEEEEccc----------cCeEEEEEEEEeCCCcceeEEEE
Q 025077 111 TVLSLGTDAAFDIST------RTFSNYNAGLSFNTALFNASVNLNDK----------LENLRASYYQELVPLTRTAVAAE 174 (258)
Q Consensus 111 ~~~~lG~e~~yd~~~------~~~~~~~~~~~y~~~d~~~s~~l~~~----------~~~~~aS~~~kv~~~~~~~vgae 174 (258)
.+|.+++...+.-.. ..-..|.+++.|....+.+.+-.... .+.+.+..-.++.+ +.+++.
T Consensus 146 ~G~~~~a~Y~~g~~~~~g~~~~~~~~~~~~~~Y~~g~~~~~~~Y~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~~l~~~ 222 (332)
T 2fgq_X 146 GGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFGV---AKLSGL 222 (332)
T ss_dssp TTEEEEEEEECCTTCCBTTBSSTTCEEEEEEEEECSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECSS---CEEEEE
T ss_pred CCEEEEEEEEcCCCCcCCCCCCCCcEEEEEEEEecCCEEEEEEEEEEecCCCCcccceEEEEEEEEEEECC---EEEEEE
Confidence 456777777764221 12246899999998888887765321 12334444446654 344544
Q ss_pred EEEeecCCcccCCCCCCCceEEEEEEEeeCCCCeEEEEEc---------CCceEEEEEEEEeccceEEEEEEee
Q 025077 175 LKHSFSNHRSISDNIPIPTSLTVGFQHGLFPSTLVKVRVN---------TNGKVGAHVQQSFWQKFSIAVSGET 239 (258)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~s~~Kakvn---------s~g~vg~~~~~~l~p~v~ltls~~i 239 (258)
..+.-... ......+...+.+|++|.+.+...+++-.. +.-++.+.+++.|.+...+=.....
T Consensus 223 Y~~~~~~~--~~~~~~~~~~~~~ga~y~~t~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~~~~ 294 (332)
T 2fgq_X 223 LQQTKFKR--DIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAF 294 (332)
T ss_dssp EEEEEEEE--TTSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEEEEEEEE
T ss_pred EEEEEccC--CCCCcceeeEEEEEEEEEecCceEEEEEEEEEccCCCCCCeEEEEEEEEEccccchHheeeeee
Confidence 44321100 000011256789999999977777776431 1236889999999999777665544
No 15
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, OUTE membrane, beta-domain, beta-barrel; HET: CXE; 2.60A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=47.00 E-value=1.4e+02 Score=25.71 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=35.5
Q ss_pred eeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCC-CeEEEEE----------------cCCceEEEEEEEEeccce
Q 025077 169 TAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPS-TLVKVRV----------------NTNGKVGAHVQQSFWQKF 231 (258)
Q Consensus 169 ~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~-s~~Kakv----------------ns~g~vg~~~~~~l~p~v 231 (258)
.++|+++.+.+.... .....++.+|++... ..+.+.+ .+...+++.++-++.+.+
T Consensus 210 ~~lG~r~~~~~~~~~--------~~~~~~~~~h~~~~~~~~~~a~f~~~~~~~F~~~g~~~~~~~~~~g~G~~~~~~~~~ 281 (308)
T 1uyn_X 210 GLAGLKLSQPLSDKA--------VLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGW 281 (308)
T ss_dssp EEEEEEEEEECSSSE--------EEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEETTE
T ss_pred EeeeEEEEEEecCce--------EEEEEEEEEeccCCCCcceEEEeecCCCceEEEccccCCCceEEEeeeEEEEecCCE
Confidence 456666666653110 335567777776432 2222222 233478999999999886
Q ss_pred EEEEEEee
Q 025077 232 SIAVSGET 239 (258)
Q Consensus 232 ~ltls~~i 239 (258)
++.++-+-
T Consensus 282 ~l~~~y~~ 289 (308)
T 1uyn_X 282 NGLARYSY 289 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 66555433
No 16
>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3o0e_A* 3poq_A* 3pou_A* 3pox_A* 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A ...
Probab=42.98 E-value=1.7e+02 Score=25.50 Aligned_cols=142 Identities=9% Similarity=-0.013 Sum_probs=79.1
Q ss_pred cceeeeEEEEEeccC-----CcceeEEEEEeeecCceEEEEEEccc----------------cCeEEEEEEEEeCCCcce
Q 025077 111 TVLSLGTDAAFDIST-----RTFSNYNAGLSFNTALFNASVNLNDK----------------LENLRASYYQELVPLTRT 169 (258)
Q Consensus 111 ~~~~lG~e~~yd~~~-----~~~~~~~~~~~y~~~d~~~s~~l~~~----------------~~~~~aS~~~kv~~~~~~ 169 (258)
.+|.+++...+.-.. ..-..|.+++.|....+.+.+-.... .+.+.++.-.++.+ +
T Consensus 149 ~G~~~~~~y~~~~~~~~~~~~~~~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~~---~ 225 (340)
T 2zfg_A 149 DGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANN---I 225 (340)
T ss_dssp TTEEEEEEEECCBCCSSSTTCBCCEEEEEEEEEETTEEEEEEEEEEECCHHHHTSSBCCCSEEEEEEEEEEEEETT---E
T ss_pred CCeEEEEEEecCCCCCccccccCCeEEEEEEEecCCEEEEEEEEEecCcccccccccCCCceeeEEEEEEEEEcCC---E
Confidence 456666665553221 22346899999998888887764321 12344444445554 3
Q ss_pred eEEEEEEEeecCCcccCC-------CCCCCceEEEEEEEeeCCCCeEEE-----EEc---------CCceEEEEEEEEec
Q 025077 170 AVAAELKHSFSNHRSISD-------NIPIPTSLTVGFQHGLFPSTLVKV-----RVN---------TNGKVGAHVQQSFW 228 (258)
Q Consensus 170 ~vgae~~~~~~~~~~~~~-------~~~~~~~~tiG~ky~ld~~s~~Ka-----kvn---------s~g~vg~~~~~~l~ 228 (258)
.+++...+.-... ..+. ...+...+++|++|.+.|...+++ +.+ ..-++.+.+++.|.
T Consensus 226 ~l~a~Y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ga~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~lS 304 (340)
T 2zfg_A 226 YLAANYGETRNAT-PITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFN 304 (340)
T ss_dssp EEEEEEEEEESCS-EEEETTTTEEEECSEEEEEEEEEEECCTTSEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEecC-cCCcccccccccceeEEEEEEEEEEEecCCeeEEEEEEEEeccccCCCCCcceEEEEEEEEEEEec
Confidence 4554444321110 0000 001256789999999988765654 211 12368899999999
Q ss_pred cceEEEEEEeeec-cC-----CCCCCeeEEEEEE
Q 025077 229 QKFSIAVSGETDI-RA-----SSWIPNVRFGMAF 256 (258)
Q Consensus 229 p~v~ltls~~iD~-~~-----~~~~hK~Gl~l~l 256 (258)
+...+=.....+. +. .....-+++||..
T Consensus 305 KrT~lY~~~~~~~~~~~~~~~~~~~~~~~vGirh 338 (340)
T 2zfg_A 305 KNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVY 338 (340)
T ss_dssp TTEEEEEEEEEECCCTTCTTCCCCBCEEEEEEEE
T ss_pred CCeEEEEEEEEeccCCccccCCCCCcEEEEEEEE
Confidence 9977766654432 11 1123567777653
No 17
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=42.38 E-value=2e+02 Score=26.31 Aligned_cols=138 Identities=10% Similarity=0.081 Sum_probs=72.6
Q ss_pred eEEEEEEEe-ccceeeeEEEEEeccCCcceeEEEEEeeecC-ceEEEEEEccccCeEEEEEEEEeCCCcceeEEEEEEEe
Q 025077 101 IVKFSVVAG-NTVLSLGTDAAFDISTRTFSNYNAGLSFNTA-LFNASVNLNDKLENLRASYYQELVPLTRTAVAAELKHS 178 (258)
Q Consensus 101 ~v~~s~v~g-~~~~~lG~e~~yd~~~~~~~~~~~~~~y~~~-d~~~s~~l~~~~~~~~aS~~~kv~~~~~~~vgae~~~~ 178 (258)
.++.+.-.. .++|.+.+++.|..- +.+....+ ..... .........| ...+++..-+++++++.+-+| +.|.
T Consensus 287 ~~~lg~~~~~~~~~~l~~d~~~~~w-S~~~~~~~--~~~~~~~~~~~~~~~d-~~~~~lG~eY~~~~~~tlRaG--~~yd 360 (451)
T 3dwo_X 287 YASLDWVHQFNDRLSLGASATWTEW-SSFQDLTL--KSHGNTIVSIPYTYRN-TWTLAVGGDYKVTDQWTMRAG--VAYD 360 (451)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEECG-GGCCEEEE--EETTEEEEEEECCCCC-EEEEEEEEEEESSSSEEEEEE--EEEE
T ss_pred EEEEEEEEEeCCCEEEEEEEEEEEe-cCcceeEE--EcCCccccccccCcee-eeEEEEEEEEEeCCCEEEEEE--EEEc
Confidence 555555544 678888888888532 22322222 11110 0111112333 356888888999999544444 5554
Q ss_pred ecCC--cccCCCC--CCCceEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEEeccceEE-----------EEEEeeeccC
Q 025077 179 FSNH--RSISDNI--PIPTSLTVGFQHGLFPSTLVKVRVNTNGKVGAHVQQSFWQKFSI-----------AVSGETDIRA 243 (258)
Q Consensus 179 ~~~~--~~~~~~~--~~~~~~tiG~ky~ld~~s~~Kakvns~g~vg~~~~~~l~p~v~l-----------tls~~iD~~~ 243 (258)
-..- ...+... .....+++|+.|++.+ -.+..|.+.|++......++ .++|+.+..
T Consensus 361 ~sp~~~~~~~~~~P~~~~~~~s~G~~y~~~~--------~~~~~ld~~y~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 431 (451)
T 3dwo_X 361 QTPTHNATRDPRIPDGDRYFASLGAGYRFQS--------MPELSIDAAYSRQFVKEVPLKTVNQDRLGGGRLDGRATSK- 431 (451)
T ss_dssp CCSCCTTTCCSSSCCCCEEEEEEEEEEECSS--------SSSEEEEEEEEEEEECCEEECCBCCGGGTSCEEEEEEEEE-
T ss_pred cCCCCcccccccccCCCCEEEEEeEEEEecC--------CCCeEEEEEEEEEEcCcceeecccccccccceEEEEEEEE-
Confidence 3211 0000111 1255799999999851 02346667776666555544 355555432
Q ss_pred CCCCCeeEEEEEE
Q 025077 244 SSWIPNVRFGMAF 256 (258)
Q Consensus 244 ~~~~hK~Gl~l~l 256 (258)
.+-+|+++..
T Consensus 432 ---a~~~g~~~~~ 441 (451)
T 3dwo_X 432 ---GQVFSLSATY 441 (451)
T ss_dssp ---EEEEEEEEEE
T ss_pred ---EEEEEEEEEe
Confidence 4667777654
No 18
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=39.64 E-value=2.1e+02 Score=25.55 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=34.0
Q ss_pred cceeEEEEEeeecCceEEEEEEcc--------------ccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCC
Q 025077 127 TFSNYNAGLSFNTALFNASVNLND--------------KLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIP 192 (258)
Q Consensus 127 ~~~~~~~~~~y~~~d~~~s~~l~~--------------~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~ 192 (258)
+...+.+++.|.-..+.+.+.... +.+.+.+.+.+.++++ +.+=++..|.-..+ +++-.++
T Consensus 270 k~~~~~l~a~Y~~g~~~~~~sY~~~~k~k~~~~~~~~~~~~~~~vG~~Y~lsKr--t~~Ya~y~~~~n~~---~~~~~~~ 344 (355)
T 3vy8_X 270 EQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKR--TSALVSAGWLKQGK---GAGKVEQ 344 (355)
T ss_dssp EEEEEEEEEEECBTTEEEEEEEEEECCEEETTEEEGGGCEEEEEEEEEEESSSS--EEEEEEEEEEEESS---TTSCEEE
T ss_pred eeeEEEEEEEEEcCCeEEEEEEEEeccccccccccCCCcceEEEEEEEEEcCCC--eEEEEEEEEEEcCC---Ccccccc
Confidence 344566666676555555544321 1124556666666666 44444555433221 0111124
Q ss_pred ceEEEEEEEe
Q 025077 193 TSLTVGFQHG 202 (258)
Q Consensus 193 ~~~tiG~ky~ 202 (258)
+.++||.+|+
T Consensus 345 ~~~~vGl~hk 354 (355)
T 3vy8_X 345 TASMVGLRHK 354 (355)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEeeeEEe
Confidence 4556666665
No 19
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=36.67 E-value=71 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=16.4
Q ss_pred CceEEEEEEEeeCCCCeEEEEEc
Q 025077 192 PTSLTVGFQHGLFPSTLVKVRVN 214 (258)
Q Consensus 192 ~~~~tiG~ky~ld~~s~~Kakvn 214 (258)
+..++||+.|.+++...+|+-+.
T Consensus 66 ~~AvAvG~~~~~n~~~~~~~~~s 88 (105)
T 2lme_A 66 SQALAIGSGYRVNESVALKAGVA 88 (105)
T ss_dssp EEEEEEEEEEEESSSBCCEEEEE
T ss_pred ceEEEEEEEEEeCCCEEEEEEEE
Confidence 67788888887777776666543
No 20
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=30.36 E-value=2.6e+02 Score=23.95 Aligned_cols=40 Identities=5% Similarity=-0.036 Sum_probs=20.1
Q ss_pred CeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCCCCCCCceEEEEEEEe
Q 025077 153 ENLRASYYQELVPLTRTAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHG 202 (258)
Q Consensus 153 ~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ 202 (258)
..+.+.|-|.++++ +.+-++....-.... +..+.+|.+|.
T Consensus 261 ~~~~lg~~Y~Ls~~--~~lya~y~~~~~~~~--------~~~~~~Gvr~~ 300 (301)
T 2por_A 261 TYYGLGASYDLGGG--ASIVGGIADNDLPNS--------DMVADLGVKFK 300 (301)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEECSSSC--------CCEEEEEEEEE
T ss_pred cEEEEEEEEcCCCC--eEEEEEEEeccCCCC--------ceeEEEEeEEe
Confidence 35566666666666 333444444322110 34566666665
No 21
>2j1n_A Outer membrane protein C; transport protein, beta-barrel, ION transport, osmoporin; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 3nb3_D 4a8d_M 2ixx_A* 2xe1_A* 2xe2_A* 2ixw_A* 2xe5_A* 2xe3_A* 2xg6_A 1osm_A*
Probab=28.83 E-value=2.9e+02 Score=23.97 Aligned_cols=124 Identities=9% Similarity=0.078 Sum_probs=71.1
Q ss_pred eeEEEEEeeecCceEEEEEEcc-----------------ccCeEEEEEEEEeCCCcceeEEEEEEEeecCCcccCC--CC
Q 025077 129 SNYNAGLSFNTALFNASVNLND-----------------KLENLRASYYQELVPLTRTAVAAELKHSFSNHRSISD--NI 189 (258)
Q Consensus 129 ~~~~~~~~y~~~d~~~s~~l~~-----------------~~~~~~aS~~~kv~~~~~~~vgae~~~~~~~~~~~~~--~~ 189 (258)
..|.+++.|....+.+.+-... ..+.+.+..-.++.+ +.+++...+.-... ..+. ..
T Consensus 178 ~~~~~~~~Y~~g~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~~l~a~Y~~~~~~~-~~~~~~~~ 253 (346)
T 2j1n_A 178 DGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANN---IYLAAQYTQTYNAT-RVGSLGWA 253 (346)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECCTTTSSTTSBCCCSEEEEEEEEEEEEETT---EEEEEEEEEEESCS-BCTTSBBC
T ss_pred ceEEEEEEEEeCCEEEEEEEEEecCcccccccccccccccceEEEEEEEEeeCC---EEEEEEEeeeEecc-ccCccccc
Confidence 3588999999888887765431 112334444445654 44555444322111 0000 00
Q ss_pred CCCceEEEEEEEeeCCCCeEEE-----EEcC-------Cc---eEEEEEEEEeccceEEEEEEeeeccC---------CC
Q 025077 190 PIPTSLTVGFQHGLFPSTLVKV-----RVNT-------NG---KVGAHVQQSFWQKFSIAVSGETDIRA---------SS 245 (258)
Q Consensus 190 ~~~~~~tiG~ky~ld~~s~~Ka-----kvns-------~g---~vg~~~~~~l~p~v~ltls~~iD~~~---------~~ 245 (258)
.+...+++|++|.+.+...+.+ +.++ .. ++.+.++..|.+...+-........+ ..
T Consensus 254 ~~~~~~~~~a~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~lSKrt~lY~~~~~~~~~~~~~~~~~~~~ 333 (346)
T 2j1n_A 254 NKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGIN 333 (346)
T ss_dssp SEEEEEEEEEEECCTTSEEEEEEEEEEEEESCSTTCCSEEEEEEEEEEEEEESSSSEEEEEEEEEECCCCCHHHHHHTCC
T ss_pred eEEEEEEEEEEEEEecCeEEEEEEEEEeccccccccCCcceEEEEEEEEEEEecCCeEEEEEEEEEeccCCcccccCCCC
Confidence 1246789999999987765554 2221 12 68899999999998877666554311 11
Q ss_pred CCCeeEEEEEE
Q 025077 246 WIPNVRFGMAF 256 (258)
Q Consensus 246 ~~hK~Gl~l~l 256 (258)
...-+++||..
T Consensus 334 ~~~~~~vGirh 344 (346)
T 2j1n_A 334 TDNIVALGLVY 344 (346)
T ss_dssp CSCEEEEEEEE
T ss_pred cCcEEEEEEEE
Confidence 33567777653
No 22
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=28.07 E-value=2.1e+02 Score=22.16 Aligned_cols=23 Identities=30% Similarity=0.150 Sum_probs=17.0
Q ss_pred ceEEEEEEEEeccceEEEEEEee
Q 025077 217 GKVGAHVQQSFWQKFSIAVSGET 239 (258)
Q Consensus 217 g~vg~~~~~~l~p~v~ltls~~i 239 (258)
..+|++.|..+.|.+.+-+.-+.
T Consensus 116 ~~~GaGvey~~~~n~~~~~eY~y 138 (157)
T 3qra_A 116 LAYGAGLQFNPHPNFVIDASYEY 138 (157)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEE
T ss_pred eEEEEEEEEEecCCEEEEEEEEE
Confidence 34788888888888877776544
No 23
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=23.23 E-value=4.8e+02 Score=24.71 Aligned_cols=64 Identities=9% Similarity=0.025 Sum_probs=42.1
Q ss_pred eeEEEEEEEeecCCcccCCCCCCCceEEEEEEEeeCCC-CeEEEEEcC----------------CceEEEEEEEEeccce
Q 025077 169 TAVAAELKHSFSNHRSISDNIPIPTSLTVGFQHGLFPS-TLVKVRVNT----------------NGKVGAHVQQSFWQKF 231 (258)
Q Consensus 169 ~~vgae~~~~~~~~~~~~~~~~~~~~~tiG~ky~ld~~-s~~Kakvns----------------~g~vg~~~~~~l~p~v 231 (258)
..+|+++.+.+...- ...+.++.+|++... ..+++++.+ .+.++++++-++.+++
T Consensus 534 ~~lG~r~~~~~~~~~--------~p~~~~~~~h~f~~~~~~~~~~f~~~~~~~f~~~g~~~~~~~~~~g~G~~~~~~~~~ 605 (632)
T 3kvn_X 534 LGAGLQGKYAFGSDT--------QLFAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPEL 605 (632)
T ss_dssp EEEEEEEEEESSSSE--------EEEEEEEEEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEEEETTE
T ss_pred EEEEEEEEEEecceE--------EEEEEEEEehhhCCCCcceEEEeecCCCCceEEccccCCCCEEEEEEEEEEEECCCE
Confidence 566777777765221 456677888887554 566666654 2448999999999987
Q ss_pred EEEEEEeee
Q 025077 232 SIAVSGETD 240 (258)
Q Consensus 232 ~ltls~~iD 240 (258)
++.+..+-.
T Consensus 606 sl~~~y~~~ 614 (632)
T 3kvn_X 606 SLRGGYNWR 614 (632)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 766554433
No 24
>3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening cell membrane, cell outer membrane, ION transport, membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X*
Probab=20.74 E-value=4.2e+02 Score=23.04 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=15.1
Q ss_pred eEEEEEEEEeccceEEEEEEe
Q 025077 218 KVGAHVQQSFWQKFSIAVSGE 238 (258)
Q Consensus 218 ~vg~~~~~~l~p~v~ltls~~ 238 (258)
++.+.+++.|.+...+=....
T Consensus 311 ~~~lg~~Y~LSKrT~lY~~~~ 331 (355)
T 3a2s_X 311 QVIVGADYDFSKRTSALVSAG 331 (355)
T ss_dssp EEEEEEEEESSSSEEEEEEEE
T ss_pred EEEEEEEEeeccceEEEEEEE
Confidence 678888888888876655443
Done!