BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025079
         (258 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 141
          Length = 70

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 207
           L  E+EC IC++    ++LP C H+ C KC   W+ +  +CP CR  M   N
Sbjct: 12  LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62


>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
          Length = 149

 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 99  LTSPGRKATIREFYGVILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSA---- 154
           L SPG +      +  ++  L R   +   +  AK + LE    ++ +  +Q        
Sbjct: 3   LGSPGFQE-----HWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHM 57

Query: 155 --DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204
              LE E +C IC E   + V  NC H+ C  C   W  +   CP CR  +K
Sbjct: 58  NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109


>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
          Length = 138

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 24/49 (48%)

Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204
           LE E +C IC E   + V  NC H+ C  C   W  +   CP CR  +K
Sbjct: 50  LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98


>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
          Length = 138

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 24/49 (48%)

Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204
           LE E +C IC E   + V  NC H+ C  C   W  +   CP CR  +K
Sbjct: 50  LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98


>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
          Length = 84

 Score = 39.3 bits (90), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 204
           C IC E    + +  C H MC  C  +W  ++ + CPFCR  +K
Sbjct: 30  CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 73


>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
           Ubiquitination Activity
          Length = 83

 Score = 38.5 bits (88), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 204
           C IC E    + +  C H MC  C  +W  ++ + CPFCR  +K
Sbjct: 27  CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 70


>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
           Tyr363 Phosphorylated Form
          Length = 82

 Score = 37.7 bits (86), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 204
           C IC E    + +  C H MC  C   W  +  + CPFCR  +K
Sbjct: 29  CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 72


>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
 pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
 pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
 pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
 pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
 pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
 pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
 pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
          Length = 389

 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 204
           C IC E    + +  C H MC  C  +W  ++ + CPFCR  +K
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378


>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
          Length = 391

 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 204
           C IC E    + +  C H MC  C  +W  ++ + CPFCR  +K
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380


>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
           Complex
          Length = 391

 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 204
           C IC E    + +  C H MC  C  +W  ++ + CPFCR  +K
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380


>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
           Ubiquitin-Protein Ligases
          Length = 388

 Score = 37.7 bits (86), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 204
           C IC E    + +  C H MC  C  +W  ++ + CPFCR  +K
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378


>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
 pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
 pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
          Length = 394

 Score = 36.6 bits (83), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 204
           C IC E    + +  C H MC  C   W  +  + CPFCR  +K
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 384


>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
           Tripartite Motif-containing Protein 31
          Length = 73

 Score = 35.0 bits (79), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGSMKR 205
           L+ E  C ICL+   K V  +C H  C+KC       S     CP C+ S+++
Sbjct: 17  LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69


>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
 pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
          Length = 99

 Score = 34.7 bits (78), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 162 CGICLEPCT-KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLTCTDDV 220
           CGIC E     M++P C H  C  C R + +    CP C  ++   + ++  +L   D++
Sbjct: 25  CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRIL---DEL 81

Query: 221 IDPETVSKEDLLRFYL 236
           +     ++  LL+F L
Sbjct: 82  VKSLNFARNHLLQFAL 97


>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 146
          Length = 71

 Score = 34.3 bits (77), Expect = 0.062,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 161 ECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCR 200
           EC ICL+ C   V   C H  C  C +  +   + C  CR
Sbjct: 17  ECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCR 56


>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
          Length = 115

 Score = 34.3 bits (77), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKRVNS 208
           E +CGIC+E   + V   C H +C  C+++   K+   CPFCR   +RV+S
Sbjct: 15  ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCR---RRVSS 62


>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
           Tripartite Motif Protein 34
          Length = 79

 Score = 34.3 bits (77), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 149 SQVGSADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS-------ESCPFC 199
           S   S +++ E  C ICLE  T+ +  +C H++C  C    N ++        SCP C
Sbjct: 2   SSGSSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59


>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Of Tripartite Motif-Containing Protein 5
          Length = 85

 Score = 33.9 bits (76), Expect = 0.085,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS------ESCPFCRGSMKRVN 207
           +++ E  C ICLE  T+ +  +C H+ C  C    + KS       SCP CR S +  N
Sbjct: 15  NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73


>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
           Resonance Spectroscopy; A New Structural Class Of Zinc-
           Finger
          Length = 68

 Score = 32.3 bits (72), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 160 DECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 206
           + C ICLE  +   M LP C HA C  C   W  ++ +CP C+  ++ V
Sbjct: 6   ERCPICLEDPSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53


>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
 pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
          Length = 62

 Score = 32.0 bits (71), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204
           L+ E  C +CL+    +V   C H +C +C        + CP CR  ++
Sbjct: 10  LQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGL----QLCPICRAPVR 54


>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
          Length = 55

 Score = 31.6 bits (70), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 161 ECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCR 200
           EC +CL           LP C H    +C   W     +CP CR
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50


>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Tripartite Motif Protein 30
          Length = 85

 Score = 31.6 bits (70), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCY-----RNWNTKSE-SCPFCR 200
           ++ E  C ICLE   + V  +C H+ C  C       N NT  + +CP CR
Sbjct: 16  IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66


>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
           Tripartite Motif-containing Protein 31
          Length = 63

 Score = 30.8 bits (68), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS---ESCPFC 199
           L+ E  C ICL+   K V  +C H  C+KC       S     CP C
Sbjct: 17  LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63


>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
 pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
          Length = 71

 Score = 30.4 bits (67), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 10/53 (18%)

Query: 162 CGICLEPCTKMVL-------PNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 207
           C IC++  +++V          C H  C +C R+    + +CP CR   K++N
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR---KKIN 62


>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 4
          Length = 69

 Score = 30.0 bits (66), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 10/53 (18%)

Query: 162 CGICLEPCTKMVL-------PNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 207
           C IC++  +++V          C H  C +C R+    + +CP CR   K++N
Sbjct: 18  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR---KKIN 67


>pdb|2XEU|A Chain A, Ring Domain
          Length = 64

 Score = 30.0 bits (66), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 10/53 (18%)

Query: 162 CGICLEPCTKMVL-------PNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 207
           C IC++  +++V          C H  C +C R+    + +CP CR   K++N
Sbjct: 6   CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR---KKIN 55


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
           Protein 24
          Length = 74

 Score = 29.6 bits (65), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 155 DLEREDECGICLE---PCTKMVLPNCCHAMCIKCYRNWNTKSESCPFC 199
           +L   + C +CLE   P  ++ +  C HA   KC   W    + CP C
Sbjct: 11  ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58


>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Of Ring Finger Protein 126
          Length = 78

 Score = 28.9 bits (63), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 161 ECGICLEPC----TKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNS 208
           EC +C E      +   LP C H     C   W  + +SCP CR S+   N+
Sbjct: 17  ECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67


>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
           Promotes E3 Ligase Activation Via Dimerization
          Length = 345

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 156 LEREDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMK 204
           L+ E  C +C++    +V   C H  +C +C  +       CP CRG +K
Sbjct: 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337


>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
 pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
          Length = 74

 Score = 27.7 bits (60), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 156 LEREDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMK 204
           L+ E  C +C++    +V   C H  +C  C  +       CP CR ++K
Sbjct: 21  LQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL----RKCPICRSTIK 66


>pdb|3ETZ|A Chain A, Crystal Structure Of Bacterial Adhesin Fada L76a Mutant
 pdb|3ETZ|B Chain B, Crystal Structure Of Bacterial Adhesin Fada L76a Mutant
          Length = 119

 Score = 27.3 bits (59), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 12 YQLAKSSYQDSLKVLEADIQHANAL 36
          YQ A S Y+D+LK LEA+++   A+
Sbjct: 73 YQEAASKYEDALKKLEAEMEQQKAV 97


>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
 pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
 pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
          Length = 319

 Score = 26.9 bits (58), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 146 RGDSQVGSADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205
           +G  ++ + DL    E    L+ CTK  +P    + C+ CY + N   ES       M +
Sbjct: 157 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNN---ESQLLINTIMSK 213

Query: 206 VNSEDLWV 213
             S  LW+
Sbjct: 214 F-SHGLWI 220


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,773,288
Number of Sequences: 62578
Number of extensions: 309204
Number of successful extensions: 836
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 44
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)