BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025079
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
EDEC IC++ ++LP C H+ C KC W+ + SCP CR + + D WV++
Sbjct: 152 EDECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVS 205
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
L E+EC IC++ ++LP C H+ C KC W+ +S +CP CR + N + WV++
Sbjct: 141 LTDEEECCICMDGKADLILP-CAHSFCQKCIDKWSGQSRNCPVCRIQVTAAN--ESWVMS 197
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 150 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 206
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
L E+EC IC++ ++LP C H+ C KC W+ + +CP CR M N + WV++
Sbjct: 149 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN--ESWVVS 205
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
L+ E +C IC E + V NC H+ C C ++W + E CP CR + + L +
Sbjct: 376 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEECPICRQEIV-TETRSLVLDN 434
Query: 216 CTDDVID 222
C D ++D
Sbjct: 435 CIDSMVD 441
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 129 LDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPCTKM----VLPNCCHAMCIK 184
LD IE+L F ++G L++ EC +CL + +LP C HA I
Sbjct: 99 LDKKAIESLPFFRFSALKG--------LKQGLECSVCLSKFEDVEILRLLPKCRHAFHIG 150
Query: 185 CYRNWNTKSESCPFCRGSMKRVNSE-DLWVL--TCTDDVIDPETVSKEDLLRFYLYI 238
C W + +CP CR RVN E DL VL + T I ++ ++E+ R +YI
Sbjct: 151 CIDQWLEQHATCPLCRN---RVNIEDDLSVLGNSSTSLRILNQSETREEDSRLEIYI 204
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215
L+ E +C IC E + V NC H+ C C ++W + E CP CR + + L +
Sbjct: 371 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEECPICRQEI-LSETRSLVLDN 429
Query: 216 CTDDVID 222
C D ++D
Sbjct: 430 CIDSMVD 436
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 129 LDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPC----TKMVLPNCCHAMCIK 184
LD+A +E+ + ++ ++ +S++GS DLE C ICL T +LP C H I
Sbjct: 96 LDNAVVESFPVFAYSSVK-ESKIGSKDLE----CAICLNELEDHETVRLLPICNHLFHID 150
Query: 185 CYRNWNTKSESCPFCRGSM-----KRVNSEDLWVLTCTDD--VIDPETV 226
C W +CP CR ++ K + +D L D V+D ETV
Sbjct: 151 CIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPLAAMRDHVVVDIETV 199
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 123 HSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLERE-DECGICLEPCTK----MVLPNC 177
H R LD++ I + + F + D G D + EC +CL + ++PNC
Sbjct: 96 HEVNRGLDESAIRAIPVFKFKKR--DVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNC 153
Query: 178 CHAMCIKCYRNWNTKSESCPFCRGSM 203
CH I C W + +CP CR S+
Sbjct: 154 CHVFHIDCIDIWLQGNANCPLCRTSV 179
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 84 FHILVYKVSADDRPSLTS-PGRKATIREF-----YGVILPSLQRLHSNLRELDDAKIENL 137
H+LV R +L+S P EF Y L L LH + LD A I+ L
Sbjct: 70 LHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDS--GLDQALIDAL 127
Query: 138 EIGSFDRMRGDSQVGSADLEREDECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTKS 193
+ + ++G + +C +CL E +LPNC HA I C W +
Sbjct: 128 PVFLYKEIKGTKE--------PFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSN 179
Query: 194 ESCPFCRGSM 203
+CP CRG++
Sbjct: 180 STCPLCRGTL 189
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 115 ILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVG------SADLEREDECGICLEP 168
++ L+ +E+ AK + LE+ ++ + +Q + LE E +C IC E
Sbjct: 339 VIEELKHAWQGFKEVLQAKDKELEVTKEEKEKAKAQKEEVVTQMTEVLESELQCSICSEL 398
Query: 169 CTKMVLPNCCHAMCIKCYRNWNTKSESCPFC 199
+ V NC H+ C C W + + CP C
Sbjct: 399 FIEAVTLNCAHSFCQHCISEWRNRKDKCPMC 429
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 112 YGVILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSA------DLEREDECGIC 165
Y ++ L R N + AK + LE ++ + +Q LE E +C IC
Sbjct: 349 YRSLVEELNRSKKNFEAIIQAKDKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIIC 408
Query: 166 LEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLTCTDDVID 222
E + V NC H+ C C W + CP CR +K + L + C ++D
Sbjct: 409 SEYFVEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIKS-KTRSLVLDNCISKMVD 464
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 35/120 (29%)
Query: 118 SLQRLH--------SNLRELDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPC 169
LQ LH ++R +A +++E+ SF RG +V CGIC+E
Sbjct: 270 GLQTLHPMDAAQREEHMRACIEAHEKDMEL-SFAVQRGMDKV----------CGICMEVV 318
Query: 170 TKM---------VLPNCCHAMCIKCYRNWNTKSE-------SCPFCRGSMKRVNSEDLWV 213
+ +L NC H+ CI+C R W + + SCP CR + + V + WV
Sbjct: 319 YEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSELVIPSEFWV 378
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 161 ECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCR 200
EC IC E + +C H C +C NW +S+SCP CR
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCR 123
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 115 ILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICL----EPCT 170
S QR+ +N L+++ I+++ + + GD V +D C +CL E +
Sbjct: 103 FFSSTQRISTNGDGLNESMIKSITV--YKYKSGDGFVDGSD------CSVCLSEFEENES 154
Query: 171 KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNS 208
+LP C HA + C W +CP CR + VN+
Sbjct: 155 LRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNN 192
>sp|Q9ZVT8|RF4_ARATH Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana
GN=RF4 PE=3 SV=1
Length = 823
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 103 GRKATIREFYGVILPSLQRLHSNLREL----DDAKIENLEIGSFD-RMRGDSQVGSADLE 157
G+ T ++Y + +++RL + EL D ++I L+ GS + + +G ++
Sbjct: 707 GKAETDVKYY---IDNIKRLEREISELKLKSDYSRIIALKKGSSESKATKRESLGMPKVK 763
Query: 158 REDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKS-ESCPFCRGSMKR 205
RE EC +CL ++ C H +C KC + + CP CRG++ R
Sbjct: 764 RERECVMCLSEEMSVIFLPCAHQVLCFKCNQLHEKEGMMDCPSCRGTIHR 813
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 129 LDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPCTKM----VLPNCCHAMCIK 184
LD IE+L + F ++G Q +C +CL + +LP C HA I
Sbjct: 98 LDKTAIESLPLFRFSALKGSKQ--------GLDCSVCLSKFESVEILRLLPKCRHAFHIG 149
Query: 185 CYRNWNTKSESCPFCRGSMKRVN-SEDLWVLT 215
C W + +CP CR RV+ ED VLT
Sbjct: 150 CIDQWLEQHATCPLCR---DRVSMEEDSSVLT 178
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204
E C +CL P C H C KC +W + + CP CR M+
Sbjct: 240 EASRTCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKMR 287
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 128 ELDDAKIENLEIGSFDRMRGDSQVGSADLE---REDECGICLEPCTK----MVLPNCCHA 180
E +D + E + + V S+DLE E EC ICL + VL C H
Sbjct: 70 ETEDDHKPDPEAAASSTPTTPTLVYSSDLELAGAEAECAICLSEFEQGESIQVLEKCQHG 129
Query: 181 MCIKCYRNWNTKSESCPFCRGSMKRVNSE 209
+KC W + SCP CR S+ +SE
Sbjct: 130 FHVKCIHKWLSTRSSCPTCRTSIFSQHSE 158
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 86 ILVYKVSADDRPSLTSPGRKAT-IREFYGVILPSLQRLHSNLRELDDA-KIENLEIGSFD 143
++ Y VS T G I +Y V L + S L D KI++L I + +
Sbjct: 469 VVAYGVSETIFGEWTVMGSMIIFIHSYYNVWLRAQLGWKSFLLRRDAVNKIKSLPIATKE 528
Query: 144 RMRGDSQVGSADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 203
++ + D C IC + V+ C H C + W E+CP C +
Sbjct: 529 QLE----------KHNDICAICYQDMKSAVITPCSHFFHAGCLKKWLYVQETCPLCHCHL 578
Query: 204 KRVNSEDLWVLTCTDDVIDPETVSKEDLL 232
K NS L L T+ V+ P ++++++
Sbjct: 579 K--NSSQLPGLG-TEPVLQPHAGAEQNVM 604
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204
+ D C IC + V+ C H C + W E+CP C G +K
Sbjct: 532 QHNDICSICFQDMKSAVITPCSHFFHAACLKKWLYVQETCPLCHGQLK 579
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204
LE E +C IC E + V NC H+ C C W + CP CR +K
Sbjct: 398 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 446
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 162 CGICLE-------PCTKM--VLPNCCHAMCIKCYRNWNTKSE-------SCPFCRGSMKR 205
CG+C+E P + +L NCCH C+KC R W + + SCP CR +
Sbjct: 236 CGVCMEVVFEKTNPSERRFGILSNCCHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 295
Query: 206 VNSEDLWV 213
V + WV
Sbjct: 296 VIPSEYWV 303
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 161 ECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSES-CPFCRGSMKR 205
+C IC+ P T +++ C H C C +S+ CP CRGS+ +
Sbjct: 634 DCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQ 679
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 161 ECGICLEPCTKMVLPNCCHAMCIKC-YRNWNTKS-ESCPFCRGSMKRVNSEDLWVLTCTD 218
EC ICLE VL C H MC +C +W + S CP CR +KR +++C
Sbjct: 1039 ECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTILKRTE-----LISCPT 1093
Query: 219 DVI 221
D I
Sbjct: 1094 DSI 1096
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204
LE E +C IC E + V NC H+ C C W + CP CR +K
Sbjct: 397 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 445
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK-RVNSEDLWVL 214
LE E +C IC E + V NC H+ C C W + CP CR ++ R NS L +
Sbjct: 400 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIESRTNS--LVLD 457
Query: 215 TCTDDVID 222
C ++D
Sbjct: 458 NCISKMVD 465
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 40.4 bits (93), Expect = 0.014, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 150 QVGSADLEREDECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFCR 200
Q AD + +C ICL+ + L C H C +C + W+ CP C+
Sbjct: 92 QTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCK 143
>sp|Q810L3|CHFR_MOUSE E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1
Length = 664
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 24/138 (17%)
Query: 91 VSADDRPSLTSPGRKATIREFYGVILPSLQRLHS-NLRELDDAKIENLEIGSFDR----- 144
+S R SL + G +++ + S L S + EL+ AK + G D
Sbjct: 213 ISPKGRSSLVANGELSSLSPVFQDKEASFSLLESKDHEELEPAKKKMKGDGELDTNLQLL 272
Query: 145 ---MRGDSQVGSAD----------LEREDECGIC---LEPCTKMVLPNCCHAMCIKCYRN 188
RG++Q S D +E C IC L C + L C H C CY
Sbjct: 273 VSGQRGNAQTSSEDVKDASVKPDKMEETLTCIICQDLLHDC--VSLQPCMHTFCAACYSG 330
Query: 189 WNTKSESCPFCRGSMKRV 206
W +S CP CR ++R+
Sbjct: 331 WMERSSLCPTCRCPVERI 348
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 25/107 (23%)
Query: 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFCRGSMKRVNSEDLWVL 214
+DEC IC EP K +C H + C R+W + SCP CR + +
Sbjct: 334 DDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPL---------FV 384
Query: 215 TCTDDVIDPETV---SKEDLLR---------FYLYINSLPKDYPDAL 249
T++ ++P TV S E L R L P + PD++
Sbjct: 385 GRTENEVNPRTVEVSSDEQLARQLERQNNPVHALATGLFPAEVPDSV 431
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 153 SADLEREDECGICLEPCTKM----VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 207
+ LE+ +C +CL + +LP C HA + C W + +CP CR S+ N
Sbjct: 198 TISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 118 SLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLERED--ECGICLEPCTK---- 171
+LQ + L DA+I+ I + + + +G R D +C +CL T
Sbjct: 80 ALQGRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGL----RHDLSDCAVCLREFTAEDEL 135
Query: 172 MVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 202
+LP C HA ++C W + +CP CR +
Sbjct: 136 RLLPKCSHAFHVECIDTWLLTNSTCPLCRDN 166
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 161 ECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 201
EC +CL E T VLPNC H + C W +CP CR
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 161 ECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCR 200
EC +CL E +LPNC H + C W T +CP CR
Sbjct: 99 ECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCR 142
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 97 PSLTSPGRKATIREFYG--VILPSLQRL-HSNLRELDDAKIENLEIGSFDRMRGDSQVGS 153
PS T+ R E + LQ+L H N LD A I+ L + + + G + G
Sbjct: 73 PSATASSRSNRFPEISTSDALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGG 132
Query: 154 ADLERED--ECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 203
+ ++ +C +CL E +LP C HA + C W + +CP CRG++
Sbjct: 133 GNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTL 188
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 159 EDECGICLEPCTKMVLPNCCHAMCIKC-YRNW-NTKSESCPFCRGSMKR 205
+ EC ICLE VL C H +C +C +W N+ S CP CR ++ +
Sbjct: 791 QGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSK 839
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 129 LDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICL---EPCTKM-VLPNCCHAMCIK 184
+D + IE+L + F + G EC +CL EP + +LP C HA ++
Sbjct: 121 IDRSVIESLPVFRFGALSGHKD--------GLECAVCLARFEPTEVLRLLPKCKHAFHVE 172
Query: 185 CYRNWNTKSESCPFCRGSMKRVNSEDLWVL 214
C W +CP CR RV+ ED+ ++
Sbjct: 173 CVDTWLDAHSTCPLCR---YRVDPEDILLI 199
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK-RVNS 208
LE E +C IC E + V NC H+ C C W + CP CR ++ R NS
Sbjct: 399 LENELQCIICSEYFIEAVTLNCAHSFCSFCISEWMKRKVECPICRKDIESRTNS 452
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 157 EREDECGICLEPC----TKMVLPNCCHAMCIKCYRNWNTKSESCPFCR 200
E D C +CL+ T LP+C H + C NW + SCP CR
Sbjct: 191 ENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCR 238
>sp|Q6NTV1|RNFT1_XENLA RING finger and transmembrane domain-containing protein 1
OS=Xenopus laevis GN=rnft1 PE=2 SV=2
Length = 416
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCR 200
E + C IC TK + C H C +C +W K ++CP CR
Sbjct: 351 EADGMCAICQAEFTKPIALICQHVFCEECISSWFNKEKTCPLCR 394
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFCR 200
+DEC IC EP K +C H + C R+W + SCP CR
Sbjct: 334 DDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 162 CGICLE-------PCTKM--VLPNCCHAMCIKCYRNW-------NTKSESCPFCRGSMKR 205
CGIC+E P + +L +C H C++C R W N S+SCP CR S
Sbjct: 347 CGICMEVVYEKADPSDRRFGILFSCNHTYCLRCIRRWRSATQFENRISKSCPQCRVSSGF 406
Query: 206 VNSEDLWV 213
V + WV
Sbjct: 407 VIPSEFWV 414
>sp|Q5Z5F2|ATL61_ORYSJ E3 ubiquitin-protein ligase Os06g0535400 OS=Oryza sativa subsp.
japonica GN=Os06g0535400 PE=2 SV=1
Length = 251
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 141 SFDRMRGD----SQVGSADLEREDECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTK 192
SF R+ D S GS ED+C +CL E LP C H KC W T
Sbjct: 160 SFLRLSDDEDEGSCSGSGHGAAEDKCCVCLAGMREAQALRDLPRCGHRFHAKCIGKWLTA 219
Query: 193 SESCPFCRGSMKRVNSEDLWVLTCTDDVIDP 223
+CP CR + + DD I P
Sbjct: 220 HPTCPVCRTTAVPPPAPLPASGDHADDAITP 250
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 162 CGICLE-------PCTKM--VLPNCCHAMCIKCYRNWNTKSE-------SCPFCRGSMKR 205
CGIC+E P + +L NC H C+KC R W + + SCP CR +
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 340
Query: 206 VNSEDLWV 213
V + WV
Sbjct: 341 VIPSEYWV 348
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 96 RPSLTSPGRKATIREFYGVILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSAD 155
R S SP R +T V++ R +S R LD + +L + + + A
Sbjct: 91 RSSRMSPRRLST-----SVVV---SRPYSFRRGLDSQAVRSLPVYRYTK---------AA 133
Query: 156 LEREDECGICL----EPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 202
+R ++C ICL E T V+P+C H + C W + +CP CR +
Sbjct: 134 KQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSN 184
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 162 CGICLE-------PCTKM--VLPNCCHAMCIKCYRNWNTKSE-------SCPFCRGSMKR 205
CGIC+E P + +L NC H C+KC R W + + SCP CR +
Sbjct: 277 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 336
Query: 206 VNSEDLWV 213
V + WV
Sbjct: 337 VIPSEYWV 344
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,950,188
Number of Sequences: 539616
Number of extensions: 3934962
Number of successful extensions: 13150
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 12823
Number of HSP's gapped (non-prelim): 590
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)