Query 025079
Match_columns 258
No_of_seqs 340 out of 2282
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:30:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.7 1.3E-18 2.7E-23 161.4 1.0 217 27-249 2-266 (344)
2 PHA02929 N1R/p28-like protein; 99.3 3.1E-12 6.7E-17 113.7 3.6 56 157-212 172-235 (238)
3 PLN03208 E3 ubiquitin-protein 99.2 1.5E-11 3.3E-16 105.5 4.2 53 153-205 12-80 (193)
4 PHA02926 zinc finger-like prot 99.2 1.3E-11 2.9E-16 107.5 2.9 56 157-212 168-238 (242)
5 PF13639 zf-RING_2: Ring finge 99.2 4.5E-12 9.7E-17 84.0 -0.2 41 160-200 1-44 (44)
6 PF13920 zf-C3HC4_3: Zinc fing 99.2 1.6E-11 3.5E-16 83.5 2.3 47 159-205 2-49 (50)
7 KOG0317 Predicted E3 ubiquitin 99.1 2.9E-11 6.3E-16 108.7 4.1 48 157-204 237-284 (293)
8 KOG0823 Predicted E3 ubiquitin 99.0 9.2E-11 2E-15 102.7 3.0 49 156-204 44-95 (230)
9 PF13923 zf-C3HC4_2: Zinc fing 99.0 1.4E-10 3.1E-15 74.9 2.0 38 162-199 1-39 (39)
10 PF15227 zf-C3HC4_4: zinc fing 99.0 2.4E-10 5.3E-15 75.2 2.7 38 162-199 1-42 (42)
11 PF12678 zf-rbx1: RING-H2 zinc 99.0 3.2E-10 6.8E-15 83.4 2.9 41 160-200 20-73 (73)
12 COG5243 HRD1 HRD ubiquitin lig 98.9 2E-09 4.4E-14 99.8 5.5 48 157-204 285-345 (491)
13 smart00504 Ubox Modified RING 98.9 1.9E-09 4.1E-14 76.0 3.3 45 160-204 2-46 (63)
14 KOG0320 Predicted E3 ubiquitin 98.8 1.5E-09 3.2E-14 91.7 2.8 48 157-204 129-178 (187)
15 cd00162 RING RING-finger (Real 98.8 2.1E-09 4.5E-14 69.6 2.7 43 161-203 1-45 (45)
16 TIGR00599 rad18 DNA repair pro 98.8 2.9E-09 6.4E-14 101.0 3.5 51 155-205 22-72 (397)
17 PF00097 zf-C3HC4: Zinc finger 98.8 2.9E-09 6.2E-14 69.1 2.3 38 162-199 1-41 (41)
18 KOG4628 Predicted E3 ubiquitin 98.7 1E-08 2.2E-13 95.4 5.0 46 160-205 230-279 (348)
19 PF14634 zf-RING_5: zinc-RING 98.7 8.5E-09 1.8E-13 68.3 2.8 41 161-201 1-44 (44)
20 KOG0287 Postreplication repair 98.7 2.3E-09 5.1E-14 98.3 -0.0 50 156-205 20-69 (442)
21 PF12861 zf-Apc11: Anaphase-pr 98.7 8.4E-09 1.8E-13 77.6 3.0 47 158-204 20-82 (85)
22 smart00184 RING Ring finger. E 98.7 1.7E-08 3.7E-13 63.0 2.7 38 162-199 1-39 (39)
23 KOG2164 Predicted E3 ubiquitin 98.6 1.3E-08 2.9E-13 97.8 2.3 47 159-205 186-237 (513)
24 COG5540 RING-finger-containing 98.6 1.4E-08 3E-13 92.2 2.2 47 158-204 322-372 (374)
25 COG5432 RAD18 RING-finger-cont 98.6 2.3E-08 5E-13 90.3 2.3 51 155-205 21-71 (391)
26 COG5574 PEX10 RING-finger-cont 98.6 2.6E-08 5.7E-13 88.8 2.2 48 157-204 213-262 (271)
27 KOG4172 Predicted E3 ubiquitin 98.5 3.3E-08 7.2E-13 68.0 0.5 47 159-205 7-55 (62)
28 PF04564 U-box: U-box domain; 98.4 1.6E-07 3.6E-12 68.8 2.4 47 158-204 3-50 (73)
29 KOG0802 E3 ubiquitin ligase [P 98.4 1.3E-07 2.9E-12 93.5 1.7 48 156-203 288-340 (543)
30 PF13445 zf-RING_UBOX: RING-ty 98.3 1.6E-07 3.5E-12 62.1 1.2 35 162-197 1-43 (43)
31 TIGR00570 cdk7 CDK-activating 98.3 9.3E-07 2E-11 81.2 6.0 89 159-257 3-99 (309)
32 KOG2177 Predicted E3 ubiquitin 98.3 3.1E-07 6.8E-12 80.5 1.6 46 156-201 10-55 (386)
33 KOG4265 Predicted E3 ubiquitin 98.1 1.8E-06 3.9E-11 80.1 2.6 49 157-205 288-337 (349)
34 PF14835 zf-RING_6: zf-RING of 98.0 1.7E-06 3.6E-11 61.8 1.4 44 159-204 7-51 (65)
35 KOG4159 Predicted E3 ubiquitin 98.0 3.7E-06 8.1E-11 80.0 2.5 50 156-205 81-130 (398)
36 COG5194 APC11 Component of SCF 98.0 4.3E-06 9.4E-11 61.9 2.2 30 175-204 52-81 (88)
37 KOG1785 Tyrosine kinase negati 97.9 3.5E-06 7.5E-11 79.2 1.9 46 160-205 370-417 (563)
38 KOG0978 E3 ubiquitin ligase in 97.9 3.6E-06 7.7E-11 84.6 0.5 45 160-204 644-689 (698)
39 KOG0828 Predicted E3 ubiquitin 97.8 5.8E-06 1.2E-10 79.5 1.3 48 157-204 569-634 (636)
40 KOG1734 Predicted RING-contain 97.8 7.2E-06 1.6E-10 73.6 1.2 48 157-204 222-281 (328)
41 KOG1493 Anaphase-promoting com 97.8 5.6E-06 1.2E-10 60.8 -0.0 45 160-204 21-81 (84)
42 COG5219 Uncharacterized conser 97.7 1.5E-05 3.3E-10 81.6 2.2 51 155-205 1465-1524(1525)
43 PF11793 FANCL_C: FANCL C-term 97.6 7.9E-06 1.7E-10 59.6 -0.8 46 159-204 2-66 (70)
44 KOG0824 Predicted E3 ubiquitin 97.6 2.6E-05 5.5E-10 71.1 1.9 47 159-205 7-54 (324)
45 KOG0311 Predicted E3 ubiquitin 97.6 5.8E-06 1.3E-10 76.7 -2.7 49 156-204 40-90 (381)
46 KOG1002 Nucleotide excision re 97.5 2.9E-05 6.3E-10 75.4 1.3 101 92-204 481-586 (791)
47 COG5152 Uncharacterized conser 97.5 4.3E-05 9.4E-10 66.0 1.9 53 159-215 196-248 (259)
48 KOG2879 Predicted E3 ubiquitin 97.4 0.0003 6.6E-09 63.5 6.2 52 153-204 233-287 (298)
49 KOG0804 Cytoplasmic Zn-finger 97.4 0.0001 2.3E-09 70.3 2.5 46 157-204 173-222 (493)
50 KOG0297 TNF receptor-associate 97.4 9.3E-05 2E-09 70.7 2.2 49 156-204 18-67 (391)
51 KOG4692 Predicted E3 ubiquitin 97.3 0.00021 4.6E-09 66.5 4.0 49 157-205 420-468 (489)
52 smart00744 RINGv The RING-vari 97.3 0.00014 3.1E-09 49.3 2.1 40 161-200 1-49 (49)
53 PHA03096 p28-like protein; Pro 97.3 6E-05 1.3E-09 69.0 0.0 47 160-206 179-239 (284)
54 KOG1813 Predicted E3 ubiquitin 97.2 0.00015 3.2E-09 66.1 2.1 46 159-204 241-286 (313)
55 KOG0827 Predicted E3 ubiquitin 97.1 0.00021 4.6E-09 67.2 1.8 42 160-202 5-54 (465)
56 KOG2930 SCF ubiquitin ligase, 97.1 0.00021 4.5E-09 55.6 1.1 28 175-202 79-106 (114)
57 PF11789 zf-Nse: Zinc-finger o 96.9 0.00053 1.1E-08 48.0 1.8 41 158-198 10-53 (57)
58 KOG2660 Locus-specific chromos 96.8 0.00029 6.2E-09 65.0 -0.3 50 156-205 12-62 (331)
59 KOG0825 PHD Zn-finger protein 96.8 0.00027 5.9E-09 71.5 -0.7 53 158-210 122-177 (1134)
60 COG5236 Uncharacterized conser 96.6 0.0013 2.8E-08 61.3 2.9 52 153-204 55-108 (493)
61 KOG4275 Predicted E3 ubiquitin 96.6 0.00034 7.3E-09 63.7 -0.9 43 159-205 300-343 (350)
62 KOG1645 RING-finger-containing 96.6 0.0012 2.5E-08 62.7 2.0 46 159-204 4-56 (463)
63 KOG1571 Predicted E3 ubiquitin 96.3 0.0033 7.2E-08 58.8 3.6 48 155-205 301-348 (355)
64 KOG4739 Uncharacterized protei 96.2 0.0021 4.6E-08 57.1 1.3 45 161-207 5-51 (233)
65 KOG4185 Predicted E3 ubiquitin 96.1 0.0029 6.4E-08 57.7 2.1 44 160-203 4-54 (296)
66 KOG3002 Zn finger protein [Gen 96.0 0.0037 8.1E-08 57.7 2.0 44 157-204 46-91 (299)
67 PF10367 Vps39_2: Vacuolar sor 95.9 0.0056 1.2E-07 47.0 2.4 33 155-187 74-108 (109)
68 PF14570 zf-RING_4: RING/Ubox 95.7 0.0088 1.9E-07 40.4 2.3 42 162-203 1-47 (48)
69 KOG1941 Acetylcholine receptor 95.4 0.0057 1.2E-07 57.9 0.7 48 156-203 362-415 (518)
70 KOG1001 Helicase-like transcri 95.3 0.0075 1.6E-07 61.4 1.3 45 160-205 455-501 (674)
71 PF07800 DUF1644: Protein of u 95.1 0.023 5E-07 47.6 3.5 31 159-189 2-45 (162)
72 KOG1428 Inhibitor of type V ad 95.1 0.0077 1.7E-07 64.8 0.7 50 156-205 3483-3545(3738)
73 PHA02862 5L protein; Provision 95.0 0.018 3.9E-07 47.6 2.6 44 160-204 3-53 (156)
74 PF14447 Prok-RING_4: Prokaryo 94.9 0.013 2.9E-07 40.6 1.3 44 159-204 7-50 (55)
75 PHA02825 LAP/PHD finger-like p 94.8 0.032 6.9E-07 46.9 3.7 47 157-204 6-59 (162)
76 PF04641 Rtf2: Rtf2 RING-finge 94.6 0.043 9.4E-07 49.6 4.3 48 156-204 110-161 (260)
77 KOG2114 Vacuolar assembly/sort 94.2 0.016 3.4E-07 59.6 0.6 43 159-204 840-883 (933)
78 KOG3039 Uncharacterized conser 94.2 0.035 7.5E-07 49.8 2.6 47 158-204 220-270 (303)
79 COG5222 Uncharacterized conser 94.2 0.022 4.7E-07 52.4 1.3 42 160-201 275-318 (427)
80 PF10272 Tmpp129: Putative tra 93.9 0.037 8E-07 52.3 2.4 28 177-204 311-351 (358)
81 KOG4445 Uncharacterized conser 93.8 0.026 5.6E-07 51.9 1.1 46 159-204 115-186 (368)
82 KOG3268 Predicted E3 ubiquitin 93.3 0.047 1E-06 46.8 1.8 49 160-208 166-232 (234)
83 COG5220 TFB3 Cdk activating ki 93.2 0.049 1.1E-06 48.7 1.9 46 159-204 10-64 (314)
84 KOG1814 Predicted E3 ubiquitin 93.0 0.046 1E-06 52.2 1.4 44 158-201 183-237 (445)
85 KOG4367 Predicted Zn-finger pr 92.5 0.066 1.4E-06 51.6 1.8 37 157-193 2-38 (699)
86 KOG1100 Predicted E3 ubiquitin 92.4 0.054 1.2E-06 47.6 1.0 40 161-204 160-200 (207)
87 COG5175 MOT2 Transcriptional r 92.4 0.092 2E-06 49.1 2.5 46 159-204 14-64 (480)
88 KOG2932 E3 ubiquitin ligase in 92.3 0.066 1.4E-06 49.5 1.4 46 159-206 90-136 (389)
89 KOG3800 Predicted E3 ubiquitin 92.1 0.082 1.8E-06 48.3 1.8 45 161-205 2-52 (300)
90 PF03854 zf-P11: P-11 zinc fin 92.0 0.071 1.5E-06 35.9 1.0 42 161-204 4-46 (50)
91 KOG1952 Transcription factor N 92.0 0.077 1.7E-06 54.7 1.6 49 158-206 190-249 (950)
92 PF05290 Baculo_IE-1: Baculovi 91.6 0.13 2.9E-06 42.0 2.3 48 158-205 79-133 (140)
93 KOG0826 Predicted E3 ubiquitin 91.4 0.13 2.9E-06 47.8 2.3 46 157-202 298-344 (357)
94 KOG0298 DEAD box-containing he 90.6 0.049 1.1E-06 58.3 -1.4 47 157-203 1151-1198(1394)
95 KOG3970 Predicted E3 ubiquitin 90.5 0.18 3.9E-06 44.7 2.3 47 158-204 49-105 (299)
96 PF05883 Baculo_RING: Baculovi 89.9 0.13 2.7E-06 42.2 0.8 36 159-194 26-70 (134)
97 KOG2034 Vacuolar sorting prote 89.4 0.23 4.9E-06 51.6 2.3 34 156-189 814-849 (911)
98 PF12906 RINGv: RING-variant d 89.3 0.21 4.4E-06 33.4 1.3 38 162-199 1-47 (47)
99 PF08746 zf-RING-like: RING-li 87.9 0.48 1E-05 31.1 2.4 38 162-199 1-43 (43)
100 KOG4362 Transcriptional regula 87.7 0.12 2.6E-06 52.4 -0.9 46 159-204 21-69 (684)
101 PLN02638 cellulose synthase A 87.6 0.79 1.7E-05 48.9 4.9 58 158-216 16-81 (1079)
102 PF14569 zf-UDP: Zinc-binding 87.5 0.52 1.1E-05 35.0 2.5 51 159-209 9-67 (80)
103 KOG1940 Zn-finger protein [Gen 86.4 0.39 8.5E-06 43.9 1.7 43 159-201 158-204 (276)
104 KOG3799 Rab3 effector RIM1 and 85.7 0.2 4.2E-06 41.1 -0.6 63 154-216 60-130 (169)
105 KOG3899 Uncharacterized conser 82.9 0.53 1.2E-05 43.3 0.9 28 177-204 325-365 (381)
106 PLN02189 cellulose synthase 82.6 1.3 2.7E-05 47.3 3.6 57 158-215 33-97 (1040)
107 KOG2817 Predicted E3 ubiquitin 82.0 0.89 1.9E-05 43.4 2.1 44 159-202 334-383 (394)
108 PLN02436 cellulose synthase A 82.0 1.8 4E-05 46.2 4.6 50 158-207 35-92 (1094)
109 KOG1812 Predicted E3 ubiquitin 80.7 0.76 1.7E-05 44.0 1.2 34 158-191 145-182 (384)
110 PLN02915 cellulose synthase A 79.8 2.5 5.3E-05 45.2 4.6 58 158-216 14-79 (1044)
111 PLN02400 cellulose synthase 79.5 2.1 4.6E-05 45.9 4.0 57 158-215 35-99 (1085)
112 KOG3161 Predicted E3 ubiquitin 76.9 0.76 1.6E-05 46.5 -0.1 36 160-197 12-51 (861)
113 KOG1815 Predicted E3 ubiquitin 76.7 1.5 3.3E-05 42.6 1.9 36 157-192 68-104 (444)
114 PF04216 FdhE: Protein involve 76.4 0.65 1.4E-05 42.5 -0.7 46 157-202 170-220 (290)
115 KOG3053 Uncharacterized conser 76.2 1.2 2.6E-05 40.3 1.0 52 157-208 18-86 (293)
116 KOG3039 Uncharacterized conser 74.0 2.3 5E-05 38.4 2.2 33 157-189 41-73 (303)
117 KOG0825 PHD Zn-finger protein 73.9 1.9 4.2E-05 44.6 1.8 31 174-204 118-154 (1134)
118 KOG1812 Predicted E3 ubiquitin 71.5 1.8 3.9E-05 41.5 1.0 39 160-199 307-351 (384)
119 KOG0309 Conserved WD40 repeat- 71.0 2.3 4.9E-05 43.9 1.6 26 173-198 1044-1069(1081)
120 PRK03564 formate dehydrogenase 68.7 1.8 3.9E-05 40.3 0.4 44 158-201 186-234 (309)
121 PF02891 zf-MIZ: MIZ/SP-RING z 68.3 4.3 9.3E-05 27.4 2.1 42 160-202 3-50 (50)
122 KOG3579 Predicted E3 ubiquitin 67.1 2.1 4.6E-05 39.3 0.5 34 159-192 268-305 (352)
123 KOG0827 Predicted E3 ubiquitin 65.9 0.55 1.2E-05 44.8 -3.6 47 159-205 196-246 (465)
124 COG5183 SSM4 Protein involved 63.7 5.3 0.00011 41.7 2.5 47 159-205 12-67 (1175)
125 TIGR01562 FdhE formate dehydro 63.4 2.4 5.2E-05 39.4 0.0 44 159-202 184-233 (305)
126 KOG3842 Adaptor protein Pellin 62.5 6.6 0.00014 36.7 2.7 48 157-204 339-414 (429)
127 KOG2068 MOT2 transcription fac 62.5 5.7 0.00012 37.2 2.3 45 160-204 250-298 (327)
128 smart00647 IBR In Between Ring 58.5 2.9 6.3E-05 28.6 -0.3 19 173-191 42-60 (64)
129 KOG2113 Predicted RNA binding 58.4 11 0.00023 35.3 3.3 47 155-203 339-386 (394)
130 KOG0269 WD40 repeat-containing 56.9 7.5 0.00016 40.2 2.2 41 161-201 781-825 (839)
131 PF07975 C1_4: TFIIH C1-like d 55.4 8.7 0.00019 26.3 1.7 27 174-200 24-50 (51)
132 KOG2231 Predicted E3 ubiquitin 55.4 8.8 0.00019 39.3 2.5 45 161-205 2-53 (669)
133 KOG4718 Non-SMC (structural ma 54.1 6.5 0.00014 34.7 1.2 43 159-201 181-224 (235)
134 TIGR00622 ssl1 transcription f 54.1 13 0.00028 29.6 2.7 41 160-200 56-110 (112)
135 PF06844 DUF1244: Protein of u 50.3 8.2 0.00018 27.8 1.0 12 180-191 11-22 (68)
136 COG5109 Uncharacterized conser 49.7 9.8 0.00021 35.6 1.6 42 159-200 336-383 (396)
137 KOG0801 Predicted E3 ubiquitin 49.5 5.8 0.00013 33.7 0.1 27 157-183 175-204 (205)
138 PF04710 Pellino: Pellino; In 49.4 5.6 0.00012 38.2 0.0 46 159-204 328-401 (416)
139 PLN02195 cellulose synthase A 47.9 17 0.00037 38.8 3.2 46 159-204 6-59 (977)
140 PF13240 zinc_ribbon_2: zinc-r 47.4 4.9 0.00011 22.8 -0.4 21 182-202 2-22 (23)
141 KOG3113 Uncharacterized conser 46.8 16 0.00035 33.2 2.5 45 158-204 110-158 (293)
142 KOG0802 E3 ubiquitin ligase [P 46.4 10 0.00022 37.8 1.4 44 157-204 477-520 (543)
143 PF10146 zf-C4H2: Zinc finger- 46.2 14 0.00031 32.9 2.1 25 181-205 196-220 (230)
144 COG2835 Uncharacterized conser 45.6 4.9 0.00011 28.4 -0.7 40 195-248 10-49 (60)
145 PF07191 zinc-ribbons_6: zinc- 45.4 2 4.3E-05 31.3 -2.8 43 160-207 2-44 (70)
146 PF10497 zf-4CXXC_R1: Zinc-fin 43.6 19 0.00041 28.1 2.2 24 178-201 37-69 (105)
147 KOG1609 Protein involved in mR 43.6 17 0.00036 32.9 2.2 47 159-205 78-135 (323)
148 PF01363 FYVE: FYVE zinc finge 43.5 7.4 0.00016 27.4 -0.1 31 159-189 9-43 (69)
149 KOG4185 Predicted E3 ubiquitin 42.8 3.9 8.4E-05 37.2 -2.1 43 160-202 208-265 (296)
150 PF02318 FYVE_2: FYVE-type zin 42.7 2.3 4.9E-05 33.8 -3.2 46 158-204 53-105 (118)
151 KOG4451 Uncharacterized conser 42.3 18 0.00039 32.4 2.1 24 181-204 251-274 (286)
152 KOG0824 Predicted E3 ubiquitin 42.3 7.5 0.00016 36.1 -0.3 50 157-206 103-153 (324)
153 PF09723 Zn-ribbon_8: Zinc rib 42.3 8.2 0.00018 24.9 -0.0 30 175-205 9-39 (42)
154 KOG1829 Uncharacterized conser 41.1 11 0.00023 38.1 0.5 23 175-200 535-557 (580)
155 smart00064 FYVE Protein presen 38.4 27 0.00058 24.3 2.2 31 159-189 10-44 (68)
156 PRK04023 DNA polymerase II lar 38.4 20 0.00043 38.6 2.0 44 159-204 626-674 (1121)
157 PF04423 Rad50_zn_hook: Rad50 37.2 14 0.0003 25.0 0.5 10 195-204 22-31 (54)
158 KOG2807 RNA polymerase II tran 36.9 25 0.00054 33.1 2.2 41 160-200 331-374 (378)
159 PF10571 UPF0547: Uncharacteri 36.7 10 0.00022 22.2 -0.2 7 193-199 14-20 (26)
160 PF05605 zf-Di19: Drought indu 36.4 20 0.00043 24.2 1.1 37 159-202 2-40 (54)
161 PF13901 DUF4206: Domain of un 36.1 26 0.00057 30.4 2.2 38 159-201 152-197 (202)
162 KOG1356 Putative transcription 35.1 15 0.00033 38.5 0.5 46 159-204 229-282 (889)
163 PF09145 Ubiq-assoc: Ubiquitin 34.1 28 0.00061 23.1 1.5 23 3-36 4-26 (46)
164 cd00065 FYVE FYVE domain; Zinc 34.0 29 0.00064 23.1 1.7 30 160-189 3-36 (57)
165 PF14446 Prok-RING_1: Prokaryo 33.4 35 0.00076 23.6 2.0 29 160-188 6-38 (54)
166 PF06906 DUF1272: Protein of u 33.1 33 0.00072 24.0 1.8 26 177-204 25-52 (57)
167 PF01485 IBR: IBR domain; Int 32.6 8.1 0.00017 26.2 -1.3 19 173-191 42-60 (64)
168 KOG0241 Kinesin-like protein [ 32.2 41 0.00089 36.3 3.1 38 18-58 653-697 (1714)
169 KOG2066 Vacuolar assembly/sort 32.0 15 0.00033 38.2 0.0 40 159-199 784-830 (846)
170 smart00132 LIM Zinc-binding do 30.9 31 0.00068 20.5 1.3 34 162-203 2-37 (39)
171 KOG4218 Nuclear hormone recept 29.9 16 0.00035 34.6 -0.2 14 157-170 13-26 (475)
172 PF09297 zf-NADH-PPase: NADH p 29.1 15 0.00033 22.1 -0.4 24 178-201 2-29 (32)
173 COG3058 FdhE Uncharacterized p 28.0 57 0.0012 30.1 3.0 85 157-246 183-275 (308)
174 KOG1815 Predicted E3 ubiquitin 27.2 21 0.00046 34.7 0.1 35 171-205 178-238 (444)
175 PRK11827 hypothetical protein; 27.1 11 0.00025 26.6 -1.3 16 190-205 5-20 (60)
176 KOG2113 Predicted RNA binding 25.2 23 0.00049 33.3 -0.1 46 159-204 136-183 (394)
177 COG3492 Uncharacterized protei 24.7 32 0.00069 26.5 0.6 11 180-190 42-52 (104)
178 PF14311 DUF4379: Domain of un 24.6 49 0.0011 22.3 1.5 9 191-199 47-55 (55)
179 COG3813 Uncharacterized protei 24.1 47 0.001 24.5 1.4 26 177-204 27-52 (84)
180 KOG2789 Putative Zn-finger pro 23.3 38 0.00082 32.8 1.0 32 158-189 73-106 (482)
181 COG4647 AcxC Acetone carboxyla 23.3 40 0.00087 27.6 1.0 24 161-184 59-82 (165)
182 smart00834 CxxC_CXXC_SSSS Puta 22.8 33 0.00071 21.3 0.3 13 193-205 26-38 (41)
183 PF10083 DUF2321: Uncharacteri 22.8 34 0.00074 28.8 0.5 25 177-204 26-50 (158)
184 PF13248 zf-ribbon_3: zinc-rib 20.9 27 0.00059 20.1 -0.3 7 194-200 17-23 (26)
185 PF00628 PHD: PHD-finger; Int 20.5 21 0.00045 23.3 -1.0 39 162-200 2-49 (51)
186 PF11023 DUF2614: Protein of u 20.3 32 0.00069 27.4 -0.2 16 190-205 82-97 (114)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.3e-18 Score=161.41 Aligned_cols=217 Identities=22% Similarity=0.340 Sum_probs=160.8
Q ss_pred HHhHHHHHHHHHhCCCcCCCceEEEEEeecCc-chHHHHHHHHhhcccccccccccceeEEEEEEee-cCCCCCcCcccc
Q 025079 27 EADIQHANALAAAIPRAKGGARLQMKLVYDHW-APLFWFLLQWVNSSCMCVLPRYLNFFHILVYKVS-ADDRPSLTSPGR 104 (258)
Q Consensus 27 ~~di~~an~la~~~p~~~~g~~~qm~l~y~~~-a~~~lfl~qw~d~~~~~~l~~~lgl~~iliy~vy-~dg~~~~s~~~r 104 (258)
+.+++++ |.+..+|+++.+..-+||++++.. .++..++++|+++. .++ .|+..++++..+ .++..+++...|
T Consensus 2 d~~~~~~-tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~----~~~-~~~~~~~~~~~~~~~~s~~~s~~~~ 75 (344)
T KOG1039|consen 2 DLSLSQE-TICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSA----AAS-TGLSQSLIWANAVADASATMSVSSR 75 (344)
T ss_pred ccccccc-hhhhhcccccccccceeeeeccCchhhcccccccccccc----ccc-cccchhhcccchhhccccccchhcc
Confidence 4578888 999999999999999999999777 78788899999776 343 678888899988 888888888777
Q ss_pred --cccHHHHHHhhchhH---------HHHHhhhhhhh------------------HHhhhh-hhccc-ccccccCCCCCC
Q 025079 105 --KATIREFYGVILPSL---------QRLHSNLRELD------------------DAKIEN-LEIGS-FDRMRGDSQVGS 153 (258)
Q Consensus 105 --~asi~efy~~I~psl---------~qL~~~i~~~e------------------~~q~~~-~~~~~-~~~~~~~~~~~~ 153 (258)
..+++.++++.+++- .+...+...+. ..++.. .+... .....+.++...
T Consensus 76 ~~~~~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a 155 (344)
T KOG1039|consen 76 PVLTAIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFA 155 (344)
T ss_pred cchhhhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccC
Confidence 788999999888872 11111111111 111111 11110 111112222222
Q ss_pred CCCCCcCccccccCCCCcc--------eecCCCCcccHhhHHHHh--cC-----CCCccccccccccccCCCceeecCCC
Q 025079 154 ADLEREDECGICLEPCTKM--------VLPNCCHAMCIKCYRNWN--TK-----SESCPFCRGSMKRVNSEDLWVLTCTD 218 (258)
Q Consensus 154 ~~~~~~~~C~ICle~~~~~--------vl~~C~H~FC~~Ci~~w~--~~-----~~~CP~CR~~l~~~~~~~~~~~~~~~ 218 (258)
.....+.+|+||||..... ++++|.|.||.+||+.|. .+ +++||+||.+...++++..|+.+...
T Consensus 156 ~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~ 235 (344)
T KOG1039|consen 156 LQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEE 235 (344)
T ss_pred cCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeeccc
Confidence 2335578999999977653 458999999999999997 44 57999999999999999999999998
Q ss_pred CccCCcccchHHHHHHHHHhhcCCCCCcchh
Q 025079 219 DVIDPETVSKEDLLRFYLYINSLPKDYPDAL 249 (258)
Q Consensus 219 d~vd~~~i~~E~l~Rl~~~i~~lP~~~p~~~ 249 (258)
+..+.++..++...+...|+.+.+..-|..=
T Consensus 236 k~~li~e~~~~~s~~~c~yf~~~~g~cPf~s 266 (344)
T KOG1039|consen 236 KQKLIEEYEAEMSAKDCKYFSQGLGSCPFGS 266 (344)
T ss_pred ccccHHHHHHHhhccchhhhcCCCCCCCCCC
Confidence 8888888888889999999998887777643
No 2
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.25 E-value=3.1e-12 Score=113.68 Aligned_cols=56 Identities=32% Similarity=0.894 Sum_probs=47.3
Q ss_pred CCcCccccccCCCCc--------ceecCCCCcccHhhHHHHhcCCCCccccccccccccCCCce
Q 025079 157 EREDECGICLEPCTK--------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLW 212 (258)
Q Consensus 157 ~~~~~C~ICle~~~~--------~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~ 212 (258)
..+.+|+||++.+.. +++++|+|.||..||.+|+..+.+||+||.++..+.....|
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 446799999997653 36788999999999999999999999999999877666554
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.18 E-value=1.5e-11 Score=105.53 Aligned_cols=53 Identities=26% Similarity=0.753 Sum_probs=44.9
Q ss_pred CCCCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcC----------------CCCcccccccccc
Q 025079 153 SADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----------------SESCPFCRGSMKR 205 (258)
Q Consensus 153 ~~~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~----------------~~~CP~CR~~l~~ 205 (258)
..+..++.+|+||++.+.++++++|||.||..||.+|+.. ...||.||..+..
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3455667899999999999999999999999999999632 2489999999863
No 4
>PHA02926 zinc finger-like protein; Provisional
Probab=99.16 E-value=1.3e-11 Score=107.46 Aligned_cols=56 Identities=32% Similarity=0.898 Sum_probs=45.1
Q ss_pred CCcCccccccCCCC---------cceecCCCCcccHhhHHHHhcCC------CCccccccccccccCCCce
Q 025079 157 EREDECGICLEPCT---------KMVLPNCCHAMCIKCYRNWNTKS------ESCPFCRGSMKRVNSEDLW 212 (258)
Q Consensus 157 ~~~~~C~ICle~~~---------~~vl~~C~H~FC~~Ci~~w~~~~------~~CP~CR~~l~~~~~~~~~ 212 (258)
+.+.+|+||+|... .+++++|+|.||..||.+|...+ .+||+||..+..+.++..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 44579999998742 26788999999999999997642 4699999999987776654
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.16 E-value=4.5e-12 Score=83.97 Aligned_cols=41 Identities=44% Similarity=1.009 Sum_probs=34.6
Q ss_pred CccccccCCCC---cceecCCCCcccHhhHHHHhcCCCCccccc
Q 025079 160 DECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCR 200 (258)
Q Consensus 160 ~~C~ICle~~~---~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR 200 (258)
++|+||++.+. ..+.++|+|.||.+|+.+|+.++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999774 466677999999999999999899999997
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.15 E-value=1.6e-11 Score=83.54 Aligned_cols=47 Identities=32% Similarity=0.834 Sum_probs=41.6
Q ss_pred cCccccccCCCCcceecCCCCc-ccHhhHHHHhcCCCCcccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+..|.||++...+.++.+|||. ||..|+.+|......||+||+++..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4689999999999999999999 9999999999999999999999864
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.9e-11 Score=108.71 Aligned_cols=48 Identities=29% Similarity=0.848 Sum_probs=44.5
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+....|.+|+|...+|..+||||.||+.||..|......||+||.++.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 445799999999999999999999999999999999999999999875
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=9.2e-11 Score=102.65 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=43.6
Q ss_pred CCCcCccccccCCCCcceecCCCCcccHhhHHHHhc---CCCCccccccccc
Q 025079 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT---KSESCPFCRGSMK 204 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~---~~~~CP~CR~~l~ 204 (258)
.....+|.||+|...+||++.|||.||+.||.+|+. .++.||+|+..+.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 356789999999999999999999999999999965 4458999999886
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.01 E-value=1.4e-10 Score=74.87 Aligned_cols=38 Identities=34% Similarity=0.952 Sum_probs=33.5
Q ss_pred cccccCCCCcc-eecCCCCcccHhhHHHHhcCCCCcccc
Q 025079 162 CGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFC 199 (258)
Q Consensus 162 C~ICle~~~~~-vl~~C~H~FC~~Ci~~w~~~~~~CP~C 199 (258)
|+||++.+.++ +.++|||.||.+|+.+|+....+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999998 678999999999999998888899998
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.99 E-value=2.4e-10 Score=75.25 Aligned_cols=38 Identities=34% Similarity=0.766 Sum_probs=29.6
Q ss_pred cccccCCCCcceecCCCCcccHhhHHHHhcCC----CCcccc
Q 025079 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFC 199 (258)
Q Consensus 162 C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~----~~CP~C 199 (258)
|+||++.+.+|+.++|||+||..||.+|.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999998885443 269987
No 11
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.97 E-value=3.2e-10 Score=83.39 Aligned_cols=41 Identities=37% Similarity=1.006 Sum_probs=34.2
Q ss_pred CccccccCCCC-------------cceecCCCCcccHhhHHHHhcCCCCccccc
Q 025079 160 DECGICLEPCT-------------KMVLPNCCHAMCIKCYRNWNTKSESCPFCR 200 (258)
Q Consensus 160 ~~C~ICle~~~-------------~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR 200 (258)
..|+||++.+. ..+..+|||.||..||.+|+..+.+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45999998873 245567999999999999999999999998
No 12
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2e-09 Score=99.76 Aligned_cols=48 Identities=25% Similarity=0.787 Sum_probs=40.9
Q ss_pred CCcCccccccCCC-C------------cceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPC-T------------KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~-~------------~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.++..|.||||.. . .|...||||.+|..|+..|.+++++||.||.++-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 5567999999873 2 2466779999999999999999999999999954
No 13
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.85 E-value=1.9e-09 Score=76.03 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=41.8
Q ss_pred CccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..|+||.+.+.+|++.+|||+||..|+.+|......||.|+.++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 579999999999999999999999999999887889999998874
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.5e-09 Score=91.68 Aligned_cols=48 Identities=29% Similarity=0.774 Sum_probs=41.8
Q ss_pred CCcCccccccCCCCc--ceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~--~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+....|+|||+.+.+ ++-++|||.||..||..-+.....||+||..++
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 344789999998876 556899999999999999999999999998765
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.83 E-value=2.1e-09 Score=69.56 Aligned_cols=43 Identities=40% Similarity=1.028 Sum_probs=35.7
Q ss_pred ccccccCCCCc-ceecCCCCcccHhhHHHHhcC-CCCcccccccc
Q 025079 161 ECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSM 203 (258)
Q Consensus 161 ~C~ICle~~~~-~vl~~C~H~FC~~Ci~~w~~~-~~~CP~CR~~l 203 (258)
+|+||++.+.. ..+++|||.||..|+..|... +..||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999998854 445569999999999999876 67899998753
No 16
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=2.9e-09 Score=100.97 Aligned_cols=51 Identities=29% Similarity=0.696 Sum_probs=45.9
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+++....|+||++.+..+++++|||.||..|+..|+.....||.||..+..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 456678999999999999999999999999999999888899999998764
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.79 E-value=2.9e-09 Score=69.10 Aligned_cols=38 Identities=47% Similarity=1.137 Sum_probs=34.3
Q ss_pred cccccCCCCcce-ecCCCCcccHhhHHHHhc--CCCCcccc
Q 025079 162 CGICLEPCTKMV-LPNCCHAMCIKCYRNWNT--KSESCPFC 199 (258)
Q Consensus 162 C~ICle~~~~~v-l~~C~H~FC~~Ci~~w~~--~~~~CP~C 199 (258)
|+||++.+..++ +++|||.||..|+.+|.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999888 889999999999999976 55689988
No 18
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1e-08 Score=95.41 Aligned_cols=46 Identities=33% Similarity=0.907 Sum_probs=38.7
Q ss_pred CccccccCCCCc---ceecCCCCcccHhhHHHHhcCCC-Ccccccccccc
Q 025079 160 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKR 205 (258)
Q Consensus 160 ~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~~~~-~CP~CR~~l~~ 205 (258)
..|+||+|.+.. ...+||+|.||..||.+|+.... .||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 599999999884 44466999999999999987765 59999997763
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.71 E-value=8.5e-09 Score=68.33 Aligned_cols=41 Identities=39% Similarity=0.960 Sum_probs=35.6
Q ss_pred ccccccCCCC---cceecCCCCcccHhhHHHHhcCCCCcccccc
Q 025079 161 ECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 201 (258)
Q Consensus 161 ~C~ICle~~~---~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~ 201 (258)
+|+||++.+. .+.+++|||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 5999999882 5888999999999999998866779999984
No 20
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.71 E-value=2.3e-09 Score=98.34 Aligned_cols=50 Identities=28% Similarity=0.699 Sum_probs=45.6
Q ss_pred CCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
++.-..|.||.|.|..|+++||+|+||.-||+..+....-||.|+.++..
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 34457999999999999999999999999999999999999999988864
No 21
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.71 E-value=8.4e-09 Score=77.60 Aligned_cols=47 Identities=34% Similarity=0.900 Sum_probs=37.6
Q ss_pred CcCccccccCCCC-------------cceecCCCCcccHhhHHHHhcC---CCCccccccccc
Q 025079 158 REDECGICLEPCT-------------KMVLPNCCHAMCIKCYRNWNTK---SESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~-------------~~vl~~C~H~FC~~Ci~~w~~~---~~~CP~CR~~l~ 204 (258)
.++.|+||...|. ..+...|+|.||..||.+|+.. ++.||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4678999987665 1445579999999999999764 359999999865
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.65 E-value=1.7e-08 Score=62.99 Aligned_cols=38 Identities=39% Similarity=1.047 Sum_probs=34.0
Q ss_pred cccccCCCCcceecCCCCcccHhhHHHHhc-CCCCcccc
Q 025079 162 CGICLEPCTKMVLPNCCHAMCIKCYRNWNT-KSESCPFC 199 (258)
Q Consensus 162 C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~-~~~~CP~C 199 (258)
|+||++....++.++|+|.||..|+..|.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988888888999999999999987 55689987
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.3e-08 Score=97.77 Aligned_cols=47 Identities=38% Similarity=0.834 Sum_probs=40.0
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHH-hcC----CCCcccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNW-NTK----SESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w-~~~----~~~CP~CR~~l~~ 205 (258)
+..|+||++....++.+.|||.||..||.++ ... -.+||+||..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6799999999999999999999999999764 332 2489999998864
No 24
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.4e-08 Score=92.17 Aligned_cols=47 Identities=30% Similarity=0.770 Sum_probs=39.7
Q ss_pred CcCccccccCCCCc---ceecCCCCcccHhhHHHHhc-CCCCccccccccc
Q 025079 158 REDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~-~~~~CP~CR~~l~ 204 (258)
...+|+|||+.+.+ .+.+||.|.||..|+.+|.. .+..||.||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 34799999998874 45566999999999999976 7789999999875
No 25
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.58 E-value=2.3e-08 Score=90.29 Aligned_cols=51 Identities=25% Similarity=0.499 Sum_probs=46.2
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
.+..-..|-||-+.+..|+.++|||.||.-||+..+..+.-||.||.+...
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 345557899999999999999999999999999999999999999998764
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.6e-08 Score=88.80 Aligned_cols=48 Identities=29% Similarity=0.706 Sum_probs=42.4
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHH-HhcCCC-Cccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRN-WNTKSE-SCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~-w~~~~~-~CP~CR~~l~ 204 (258)
+.+..|.||++....+..++|||.||..||.. |..++. .||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 56789999999999999999999999999988 976665 5999998764
No 27
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.3e-08 Score=68.02 Aligned_cols=47 Identities=40% Similarity=0.816 Sum_probs=40.8
Q ss_pred cCccccccCCCCcceecCCCC-cccHhhH-HHHhcCCCCcccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCH-AMCIKCY-RNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H-~FC~~Ci-~~w~~~~~~CP~CR~~l~~ 205 (258)
+.||.||+|...+.++..||| .+|..|- +.|......||+||++++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 479999999999999988999 5899998 5566678899999999874
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.39 E-value=1.6e-07 Score=68.80 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=38.7
Q ss_pred CcCccccccCCCCcceecCCCCcccHhhHHHHhcC-CCCccccccccc
Q 025079 158 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~-~~~CP~CR~~l~ 204 (258)
+++.|+|+.+.+.+|++.++||+|+..||.+|+.. ...||+|+.++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 45789999999999999999999999999999988 789999998876
No 29
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.3e-07 Score=93.51 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=41.6
Q ss_pred CCCcCccccccCCCCc-----ceecCCCCcccHhhHHHHhcCCCCcccccccc
Q 025079 156 LEREDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 203 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~-----~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l 203 (258)
...+..|.||+|.... +...+|+|.||..|+..|.++.++||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 3457899999998776 56677999999999999999999999999844
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.34 E-value=1.6e-07 Score=62.13 Aligned_cols=35 Identities=34% Similarity=0.832 Sum_probs=20.9
Q ss_pred cccccCCCCc----ceecCCCCcccHhhHHHHhcCC----CCcc
Q 025079 162 CGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKS----ESCP 197 (258)
Q Consensus 162 C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~~~~----~~CP 197 (258)
|+||.| +.. |++++|||+||.+|+.++..++ -+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 665 7777799999999999997643 2676
No 31
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=9.3e-07 Score=81.23 Aligned_cols=89 Identities=27% Similarity=0.556 Sum_probs=53.8
Q ss_pred cCccccccCC--CCc---ceecCCCCcccHhhHHH-HhcCCCCccccccccccccCCCceeecCCCCccCCcccchH-H-
Q 025079 159 EDECGICLEP--CTK---MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSEDLWVLTCTDDVIDPETVSKE-D- 230 (258)
Q Consensus 159 ~~~C~ICle~--~~~---~vl~~C~H~FC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~~~~d~vd~~~i~~E-~- 230 (258)
+..||+|... ... ..+.+|||.||..|+.. |...+..||.|+.++...+... .+.+...+.+| +
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~--------q~F~D~~vekEV~i 74 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV--------QLFEDPTVEKEVDI 74 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc--------cccccHHHHHHHHH
Confidence 3579999974 222 12226999999999988 5566679999999887432111 11222234444 2
Q ss_pred HHHHHHHhhcCCCCCcchhHHHHhhhc
Q 025079 231 LLRFYLYINSLPKDYPDALFVVYYEYL 257 (258)
Q Consensus 231 l~Rl~~~i~~lP~~~p~~~~~~y~~~~ 257 (258)
-+|+..-.++--...++ ...|.+||
T Consensus 75 Rkrv~~i~Nk~e~dF~~--l~~yNdYL 99 (309)
T TIGR00570 75 RKRVLKIYNKREEDFPS--LREYNDYL 99 (309)
T ss_pred HHHHHHHHccchhccCC--HHHHHHHH
Confidence 34555555655555553 24677775
No 32
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.1e-07 Score=80.52 Aligned_cols=46 Identities=39% Similarity=0.725 Sum_probs=40.2
Q ss_pred CCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccc
Q 025079 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 201 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~ 201 (258)
..++..|+||++.+..+.+.+|+|+||..|+..+....-.||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4566899999999999988899999999999887665569999993
No 33
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.8e-06 Score=80.14 Aligned_cols=49 Identities=31% Similarity=0.805 Sum_probs=43.6
Q ss_pred CCcCccccccCCCCcceecCCCC-cccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H-~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+...+|.||+....+.++.||.| ..|..|.....-+.+.||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 44589999999999988888999 68999999988888899999999863
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.05 E-value=1.7e-06 Score=61.76 Aligned_cols=44 Identities=30% Similarity=0.693 Sum_probs=24.3
Q ss_pred cCccccccCCCCcce-ecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMV-LPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~v-l~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
-..|++|.+.+..|+ +..|.|.||..|+.+-.. ..||.|+.+-.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 368999999999987 588999999999988544 35999987753
No 35
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.7e-06 Score=80.04 Aligned_cols=50 Identities=26% Similarity=0.708 Sum_probs=45.9
Q ss_pred CCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
...+.+|.||+..+..|+.++|||.||..|+.+-+.+...||.||.++..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 36779999999999999999999999999999988888899999999874
No 36
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.96 E-value=4.3e-06 Score=61.92 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=27.2
Q ss_pred cCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 175 PNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 175 ~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
--|.|.||..||.+|+..+..||++|++..
T Consensus 52 G~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred EecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 449999999999999999999999998764
No 37
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.95 E-value=3.5e-06 Score=79.23 Aligned_cols=46 Identities=33% Similarity=0.931 Sum_probs=40.8
Q ss_pred CccccccCCCCcceecCCCCcccHhhHHHHhcC--CCCcccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK--SESCPFCRGSMKR 205 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~--~~~CP~CR~~l~~ 205 (258)
.-|.||-|.-.+..+-||||..|..|+..|... .+.||+||.+++-
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 469999999999888889999999999999643 5799999999974
No 38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.6e-06 Score=84.56 Aligned_cols=45 Identities=24% Similarity=0.742 Sum_probs=39.9
Q ss_pred CccccccCCCCcceecCCCCcccHhhHHHH-hcCCCCccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCHAMCIKCYRNW-NTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w-~~~~~~CP~CR~~l~ 204 (258)
..|+.|-....+.+++.|+|.||..|+..- -.+...||.|..+|.
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 689999999999999999999999999765 456679999998885
No 39
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5.8e-06 Score=79.51 Aligned_cols=48 Identities=29% Similarity=0.823 Sum_probs=38.9
Q ss_pred CCcCccccccCCCC-----------------cceecCCCCcccHhhHHHHhcCCC-Cccccccccc
Q 025079 157 EREDECGICLEPCT-----------------KMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~-----------------~~vl~~C~H~FC~~Ci~~w~~~~~-~CP~CR~~l~ 204 (258)
+....|+|||.+.. +-.++||.|.||..|+.+|...-+ .||.||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45678999997653 134568999999999999988544 9999999885
No 40
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=7.2e-06 Score=73.63 Aligned_cols=48 Identities=23% Similarity=0.693 Sum_probs=37.5
Q ss_pred CCcCccccccCCCC----------cceecCCCCcccHhhHHHH--hcCCCCccccccccc
Q 025079 157 EREDECGICLEPCT----------KMVLPNCCHAMCIKCYRNW--NTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~----------~~vl~~C~H~FC~~Ci~~w--~~~~~~CP~CR~~l~ 204 (258)
.++..|+||-..+. +....+|+|.||..||+.| ..+.++||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 34568999975443 3445679999999999999 566779999998764
No 41
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=5.6e-06 Score=60.84 Aligned_cols=45 Identities=33% Similarity=0.869 Sum_probs=34.2
Q ss_pred CccccccCCCCc-------------ceecCCCCcccHhhHHHHhcC---CCCccccccccc
Q 025079 160 DECGICLEPCTK-------------MVLPNCCHAMCIKCYRNWNTK---SESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~~-------------~vl~~C~H~FC~~Ci~~w~~~---~~~CP~CR~~l~ 204 (258)
+.|+||.-.|.. .+.--|.|.||..||.+|+.. ...||+||+...
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 489999866651 233459999999999999653 348999998764
No 42
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.72 E-value=1.5e-05 Score=81.60 Aligned_cols=51 Identities=22% Similarity=0.658 Sum_probs=38.2
Q ss_pred CCCCcCccccccCCCC-------cceecCCCCcccHhhHHHHhc--CCCCcccccccccc
Q 025079 155 DLEREDECGICLEPCT-------KMVLPNCCHAMCIKCYRNWNT--KSESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~-------~~vl~~C~H~FC~~Ci~~w~~--~~~~CP~CR~~l~~ 205 (258)
.-++..||+||..... ....+.|.|.||..|+-+|.. .+..||+||.+++.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 3456689999985432 233455999999999999954 45699999988763
No 43
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.64 E-value=7.9e-06 Score=59.56 Aligned_cols=46 Identities=33% Similarity=0.842 Sum_probs=22.6
Q ss_pred cCccccccCCCC-c-----cee--cCCCCcccHhhHHHHhcC---C--------CCccccccccc
Q 025079 159 EDECGICLEPCT-K-----MVL--PNCCHAMCIKCYRNWNTK---S--------ESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~-~-----~vl--~~C~H~FC~~Ci~~w~~~---~--------~~CP~CR~~l~ 204 (258)
+.+|+||++... . .+- ..|++.||..|+.+|+.. + ..||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999997643 1 233 369999999999999431 1 16999999886
No 44
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=2.6e-05 Score=71.10 Aligned_cols=47 Identities=26% Similarity=0.600 Sum_probs=39.0
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHh-cCCCCcccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~-~~~~~CP~CR~~l~~ 205 (258)
..+|+||+....-|+.+.|+|.||.-||.--. .....||+||.++..
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 35899999999888999999999999996543 334579999999863
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=5.8e-06 Score=76.68 Aligned_cols=49 Identities=29% Similarity=0.701 Sum_probs=39.5
Q ss_pred CCCcCccccccCCCCc-ceecCCCCcccHhhHHHH-hcCCCCccccccccc
Q 025079 156 LEREDECGICLEPCTK-MVLPNCCHAMCIKCYRNW-NTKSESCPFCRGSMK 204 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~-~vl~~C~H~FC~~Ci~~w-~~~~~~CP~CR~~l~ 204 (258)
...+..|+||++.+.. .....|+|.||..||..- ....++||.||+.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 3456799999998875 445679999999999665 456679999999875
No 46
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.54 E-value=2.9e-05 Score=75.40 Aligned_cols=101 Identities=20% Similarity=0.491 Sum_probs=62.4
Q ss_pred ecCCCCCcCcccccccHHHHHHhhchhHHHHHhhhhhhhHHhhhhhhcccccccccCCCCCCCCCCCcCccccccCCCCc
Q 025079 92 SADDRPSLTSPGRKATIREFYGVILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPCTK 171 (258)
Q Consensus 92 y~dg~~~~s~~~r~asi~efy~~I~psl~qL~~~i~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~ 171 (258)
|.|.+....++-...++...|+.||.-+.++.+....-+ .-.++++. .+ ..+...+.+|++|.++..+
T Consensus 481 Y~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~------LVl~S~~~-----n~-~~enk~~~~C~lc~d~aed 548 (791)
T KOG1002|consen 481 YKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPD------LVLYSANA-----NL-PDENKGEVECGLCHDPAED 548 (791)
T ss_pred HHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcc------eeeehhhc-----CC-CccccCceeecccCChhhh
Confidence 345555555555555666666666666655542221111 11111111 11 2233456799999999999
Q ss_pred ceecCCCCcccHhhHHHHhc-----CCCCccccccccc
Q 025079 172 MVLPNCCHAMCIKCYRNWNT-----KSESCPFCRGSMK 204 (258)
Q Consensus 172 ~vl~~C~H~FC~~Ci~~w~~-----~~~~CP~CR~~l~ 204 (258)
.+.++|.|.||.-|+.++.. ..-+||.|-..+.
T Consensus 549 ~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 549 YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 99999999999999988732 2349999977665
No 47
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.52 E-value=4.3e-05 Score=65.95 Aligned_cols=53 Identities=26% Similarity=0.640 Sum_probs=43.5
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccccccCCCceeec
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLT 215 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~ 215 (258)
.+.|.||-+.+..|+.+.|||.||..|...-......|-.|-.... +..|+..
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~----G~f~V~~ 248 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY----GRFWVVS 248 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc----cceeHHh
Confidence 4789999999999999999999999999877777889999976543 4455543
No 48
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0003 Score=63.47 Aligned_cols=52 Identities=29% Similarity=0.594 Sum_probs=39.8
Q ss_pred CCCCCCcCccccccCCCCcceec-CCCCcccHhhHHHHhc--CCCCccccccccc
Q 025079 153 SADLEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNT--KSESCPFCRGSMK 204 (258)
Q Consensus 153 ~~~~~~~~~C~ICle~~~~~vl~-~C~H~FC~~Ci~~w~~--~~~~CP~CR~~l~ 204 (258)
......+.+|++|-+....|... +|+|.||.-|+..-.. .+-.||.|-.+..
T Consensus 233 ss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 33446678999999998876654 5999999999966433 3459999987764
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.35 E-value=0.0001 Score=70.33 Aligned_cols=46 Identities=28% Similarity=0.687 Sum_probs=36.0
Q ss_pred CCcCccccccCCCCc----ceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.+--.|+||+|.+.. .+.+.|.|+||..|+..|.. .+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 334689999987764 34456999999999999965 48999996554
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.35 E-value=9.3e-05 Score=70.66 Aligned_cols=49 Identities=27% Similarity=0.667 Sum_probs=44.1
Q ss_pred CCCcCccccccCCCCcceec-CCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 156 LEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~-~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.+.+..|++|+....+|+.+ .|||.||..|+..|...++.||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 45568999999999999884 89999999999999999999999998875
No 51
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00021 Score=66.52 Aligned_cols=49 Identities=22% Similarity=0.615 Sum_probs=43.7
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
.++..|+||.......+..||+|.-|..||.+-+-+.+.|-+|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 4567899999888888888899999999999999999999999987754
No 52
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.30 E-value=0.00014 Score=49.28 Aligned_cols=40 Identities=23% Similarity=0.702 Sum_probs=30.3
Q ss_pred ccccccC--CCCcceecCCC-----CcccHhhHHHHhcCC--CCccccc
Q 025079 161 ECGICLE--PCTKMVLPNCC-----HAMCIKCYRNWNTKS--ESCPFCR 200 (258)
Q Consensus 161 ~C~ICle--~~~~~vl~~C~-----H~FC~~Ci~~w~~~~--~~CP~CR 200 (258)
.|-||++ ....+...||. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 33345666785 789999999997544 4999994
No 53
>PHA03096 p28-like protein; Provisional
Probab=97.28 E-value=6e-05 Score=69.01 Aligned_cols=47 Identities=30% Similarity=0.472 Sum_probs=33.9
Q ss_pred CccccccCCCC--------cceecCCCCcccHhhHHHHhcCC---C---Cccccccccccc
Q 025079 160 DECGICLEPCT--------KMVLPNCCHAMCIKCYRNWNTKS---E---SCPFCRGSMKRV 206 (258)
Q Consensus 160 ~~C~ICle~~~--------~~vl~~C~H~FC~~Ci~~w~~~~---~---~CP~CR~~l~~~ 206 (258)
-+|+||+|... ...+++|.|.||..|+..|...+ . .||.|+..+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~v 239 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVFI 239 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHHH
Confidence 57999998654 27788999999999999995433 2 455555444443
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00015 Score=66.06 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=41.5
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.+.|.||...+..||.+.|+|.||..|...-...+..|++|-+...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 3679999999999999999999999999887888899999987664
No 55
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00021 Score=67.19 Aligned_cols=42 Identities=26% Similarity=0.748 Sum_probs=31.5
Q ss_pred CccccccCCCCc-----ceecCCCCcccHhhHHHHhcCC---CCccccccc
Q 025079 160 DECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGS 202 (258)
Q Consensus 160 ~~C~ICle~~~~-----~vl~~C~H~FC~~Ci~~w~~~~---~~CP~CR~~ 202 (258)
.+|.||.+.+.. ++-+ |||+||..|+.+|.... ..||.||-.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~-cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGT-CGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEeccCCccccccccccc-hhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 479999654432 4434 99999999999997653 479999933
No 56
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00021 Score=55.55 Aligned_cols=28 Identities=25% Similarity=0.661 Sum_probs=25.5
Q ss_pred cCCCCcccHhhHHHHhcCCCCccccccc
Q 025079 175 PNCCHAMCIKCYRNWNTKSESCPFCRGS 202 (258)
Q Consensus 175 ~~C~H~FC~~Ci~~w~~~~~~CP~CR~~ 202 (258)
..|.|.||..||.+|+..++.||+|.++
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 4599999999999999999999999754
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.90 E-value=0.00053 Score=48.03 Aligned_cols=41 Identities=24% Similarity=0.480 Sum_probs=28.8
Q ss_pred CcCccccccCCCCccee-cCCCCcccHhhHHHHhcC--CCCccc
Q 025079 158 REDECGICLEPCTKMVL-PNCCHAMCIKCYRNWNTK--SESCPF 198 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl-~~C~H~FC~~Ci~~w~~~--~~~CP~ 198 (258)
....|+|.+..+.+|+. ..|+|.|..+.|.+|+.+ ...||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34789999999999887 489999999999999843 448998
No 58
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.78 E-value=0.00029 Score=65.05 Aligned_cols=50 Identities=22% Similarity=0.586 Sum_probs=41.6
Q ss_pred CCCcCccccccCCCCcce-ecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 156 LEREDECGICLEPCTKMV-LPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~v-l~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
......|.+|-..+.++. ++-|-|+||..||.+.+.....||.|...+..
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 344578999999988743 46699999999999998889999999887763
No 59
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.76 E-value=0.00027 Score=71.46 Aligned_cols=53 Identities=26% Similarity=0.696 Sum_probs=40.2
Q ss_pred CcCccccccCCCCc---ceecCCCCcccHhhHHHHhcCCCCccccccccccccCCC
Q 025079 158 REDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSED 210 (258)
Q Consensus 158 ~~~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~ 210 (258)
....|++|+..+.+ ..-.+|+|.||..|+..|....++||+||..+..+...+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence 34567777754442 222349999999999999999999999999998765543
No 60
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.65 E-value=0.0013 Score=61.33 Aligned_cols=52 Identities=25% Similarity=0.526 Sum_probs=43.3
Q ss_pred CCCCCCcCccccccCCCCcceecCCCCcccHhhHHHH--hcCCCCccccccccc
Q 025079 153 SADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNW--NTKSESCPFCRGSMK 204 (258)
Q Consensus 153 ~~~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w--~~~~~~CP~CR~~l~ 204 (258)
+...+++..|.||-+..+-..++||+|..|--|..+. +...+.||+||..-.
T Consensus 55 ddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 3344666889999999998888889999999999654 678899999998754
No 61
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.00034 Score=63.70 Aligned_cols=43 Identities=33% Similarity=0.839 Sum_probs=36.3
Q ss_pred cCccccccCCCCcceecCCCCc-ccHhhHHHHhcCCCCcccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+.-|.|||+...+-+.++|||. -|.+|-.+ -+.||+||+.+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence 6789999999999999999994 59999643 3489999998764
No 62
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0012 Score=62.71 Aligned_cols=46 Identities=33% Similarity=0.808 Sum_probs=36.3
Q ss_pred cCccccccCCCCc-----ceecCCCCcccHhhHHHHhcCC--CCccccccccc
Q 025079 159 EDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTKS--ESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~-----~vl~~C~H~FC~~Ci~~w~~~~--~~CP~CR~~l~ 204 (258)
...|+||++.... .+.+.|||.|-..||++|+.++ ..||.|...-.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 3689999987652 6667899999999999998532 37999976543
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0033 Score=58.77 Aligned_cols=48 Identities=29% Similarity=0.732 Sum_probs=35.5
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+......|.||.+...+.+..+|||.=| |..- ..+-.+||+||..+..
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIRL 348 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHH-HhhCCCCchhHHHHHH
Confidence 3455678999999999888888999744 5533 2344469999998863
No 64
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.0021 Score=57.10 Aligned_cols=45 Identities=24% Similarity=0.775 Sum_probs=32.1
Q ss_pred ccccccCCCC--cceecCCCCcccHhhHHHHhcCCCCcccccccccccc
Q 025079 161 ECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 207 (258)
Q Consensus 161 ~C~ICle~~~--~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~~~ 207 (258)
.|.-|.-... .-.++.|+|+||..|...- ....||+|+.++..+.
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQ 51 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceeeeee
Confidence 4777764333 3567889999999998542 2239999999987443
No 65
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0029 Score=57.69 Aligned_cols=44 Identities=34% Similarity=0.763 Sum_probs=35.8
Q ss_pred CccccccCCCCc------ceecCCCCcccHhhHHHHhcCC-CCcccccccc
Q 025079 160 DECGICLEPCTK------MVLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSM 203 (258)
Q Consensus 160 ~~C~ICle~~~~------~vl~~C~H~FC~~Ci~~w~~~~-~~CP~CR~~l 203 (258)
.+|.||-+.++. |..+.|||.+|..|+.+....+ ..||+||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 579999887762 6666699999999998876654 4899999885
No 66
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.97 E-value=0.0037 Score=57.70 Aligned_cols=44 Identities=27% Similarity=0.723 Sum_probs=37.6
Q ss_pred CCcCccccccCCCCcceecCC--CCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNC--CHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C--~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.+-.+|+||.+.+..|+.. | ||.-|..|-.+ .+..||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccccee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 3448999999999999887 8 79999999753 5678999999987
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.89 E-value=0.0056 Score=46.99 Aligned_cols=33 Identities=21% Similarity=0.623 Sum_probs=25.4
Q ss_pred CCCCcCccccccCCCCc--ceecCCCCcccHhhHH
Q 025079 155 DLEREDECGICLEPCTK--MVLPNCCHAMCIKCYR 187 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~--~vl~~C~H~FC~~Ci~ 187 (258)
..+.+..|++|-..+.. -+..||||.||..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 44556789999987764 4446799999999975
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.67 E-value=0.0088 Score=40.44 Aligned_cols=42 Identities=26% Similarity=0.661 Sum_probs=20.7
Q ss_pred cccccCCCCc--ceec--CCCCcccHhhHHHHhc-CCCCcccccccc
Q 025079 162 CGICLEPCTK--MVLP--NCCHAMCIKCYRNWNT-KSESCPFCRGSM 203 (258)
Q Consensus 162 C~ICle~~~~--~vl~--~C~H~FC~~Ci~~w~~-~~~~CP~CR~~l 203 (258)
|++|.+.... .... +|++..|..|..+... ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888886632 2222 4789999999998876 477999999864
No 69
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.35 E-value=0.0057 Score=57.91 Aligned_cols=48 Identities=29% Similarity=0.626 Sum_probs=34.8
Q ss_pred CCCcCccccccCCCC----cceecCCCCcccHhhHHHHhcCC--CCcccccccc
Q 025079 156 LEREDECGICLEPCT----KMVLPNCCHAMCIKCYRNWNTKS--ESCPFCRGSM 203 (258)
Q Consensus 156 ~~~~~~C~ICle~~~----~~vl~~C~H~FC~~Ci~~w~~~~--~~CP~CR~~l 203 (258)
.+-+..|+.|-|.+- .---.||.|+||.+|+...+.++ .+||-||+-.
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 345678999987543 22224599999999999886554 5999999433
No 70
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.26 E-value=0.0075 Score=61.43 Aligned_cols=45 Identities=29% Similarity=0.852 Sum_probs=37.5
Q ss_pred CccccccCCCCcceecCCCCcccHhhHHHHhcCC--CCcccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS--ESCPFCRGSMKR 205 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~--~~CP~CR~~l~~ 205 (258)
..|.||++ ....+.+.|+|.||..|+..-...+ ..||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 7778888999999999997764433 379999988863
No 71
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.09 E-value=0.023 Score=47.61 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=23.1
Q ss_pred cCccccccCCCCcceecCC------------CCcc-cHhhHHHH
Q 025079 159 EDECGICLEPCTKMVLPNC------------CHAM-CIKCYRNW 189 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C------------~H~F-C~~Ci~~w 189 (258)
+..|+||||..-+.|++-| +..+ |..|+.++
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqf 45 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQF 45 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHH
Confidence 4689999999887777654 3333 67899887
No 72
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.07 E-value=0.0077 Score=64.80 Aligned_cols=50 Identities=24% Similarity=0.689 Sum_probs=36.9
Q ss_pred CCCcCccccccCCC-C--cceecCCCCcccHhhHHHHhcCC----------CCcccccccccc
Q 025079 156 LEREDECGICLEPC-T--KMVLPNCCHAMCIKCYRNWNTKS----------ESCPFCRGSMKR 205 (258)
Q Consensus 156 ~~~~~~C~ICle~~-~--~~vl~~C~H~FC~~Ci~~w~~~~----------~~CP~CR~~l~~ 205 (258)
.+.++.|-||+..- . ..+...|+|.||..|.++.++++ -+||+|+.+++.
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34567899998542 2 35567899999999997654433 189999998874
No 73
>PHA02862 5L protein; Provisional
Probab=95.00 E-value=0.018 Score=47.60 Aligned_cols=44 Identities=30% Similarity=0.705 Sum_probs=33.9
Q ss_pred CccccccCCCCcceecCCCC-----cccHhhHHHHhcCC--CCccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCH-----AMCIKCYRNWNTKS--ESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H-----~FC~~Ci~~w~~~~--~~CP~CR~~l~ 204 (258)
..|=||.+.....+ .||.. .-|.+|+.+|+..+ ..||+|+.+..
T Consensus 3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 57999998766554 44753 45999999997654 48999998875
No 74
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.89 E-value=0.013 Score=40.57 Aligned_cols=44 Identities=30% Similarity=0.724 Sum_probs=34.9
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+..|-.|...-...++.+|||..|..|..- .+-+.||+|-.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFE 50 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh--hhccCCCCCCCccc
Confidence 457888888777777788999999999754 34468999988775
No 75
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.84 E-value=0.032 Score=46.86 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=34.7
Q ss_pred CCcCccccccCCCCcceecCCCC-----cccHhhHHHHhcCC--CCccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCH-----AMCIKCYRNWNTKS--ESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H-----~FC~~Ci~~w~~~~--~~CP~CR~~l~ 204 (258)
..+.+|=||.+....- ..||.. .-|.+|+++|...+ .+||+|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4457899999876543 345654 33999999996544 59999999886
No 76
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.62 E-value=0.043 Score=49.56 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=39.2
Q ss_pred CCCcCccccccCCCCc----ceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 156 LEREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
......|||....+.. ..+-+|||+|+..++.+.. ....||.|-.++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 3556899999987753 6667899999999999874 4568999999886
No 77
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.016 Score=59.57 Aligned_cols=43 Identities=23% Similarity=0.533 Sum_probs=33.9
Q ss_pred cCccccccCCCCcc-eecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~-vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
...|..|-....-| |.-.|||.||.+|+. .+...||-|+..+.
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 35899998877754 446799999999998 46679999987443
No 78
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=0.035 Score=49.76 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=41.6
Q ss_pred CcCccccccCCCCc----ceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 158 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
....|+||.+..++ .++.+|||.+|.+|.++.......||+|-.+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 45789999998775 778889999999999999988899999988886
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.15 E-value=0.022 Score=52.38 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=34.5
Q ss_pred CccccccCCCCcceec-CCCCcccHhhHHHH-hcCCCCcccccc
Q 025079 160 DECGICLEPCTKMVLP-NCCHAMCIKCYRNW-NTKSESCPFCRG 201 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~-~C~H~FC~~Ci~~w-~~~~~~CP~CR~ 201 (258)
..|+.|......++.+ .|+|.||..||..- +.....||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999988877766 67999999999765 455569999965
No 80
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.93 E-value=0.037 Score=52.35 Aligned_cols=28 Identities=29% Similarity=0.888 Sum_probs=21.0
Q ss_pred CCCcccHhhHHHHhcCC-------------CCccccccccc
Q 025079 177 CCHAMCIKCYRNWNTKS-------------ESCPFCRGSMK 204 (258)
Q Consensus 177 C~H~FC~~Ci~~w~~~~-------------~~CP~CR~~l~ 204 (258)
|.-..|.+|+.+|...+ -.||+||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 34556999999994322 27999999986
No 81
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.81 E-value=0.026 Score=51.89 Aligned_cols=46 Identities=30% Similarity=0.710 Sum_probs=33.8
Q ss_pred cCccccccCCCCc---ceecCCCCcccHhhHHHHhc------------------CC-----CCccccccccc
Q 025079 159 EDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT------------------KS-----ESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~------------------~~-----~~CP~CR~~l~ 204 (258)
...|.||+--|.. -..+.|-|-||..|+.+++. +. ..||+||..++
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3578888865542 45577999999999976632 11 17999999987
No 82
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.047 Score=46.77 Aligned_cols=49 Identities=22% Similarity=0.559 Sum_probs=33.5
Q ss_pred CccccccCCCCc-----c--eecCCCCcccHhhHHHHhcC----C-------CCccccccccccccC
Q 025079 160 DECGICLEPCTK-----M--VLPNCCHAMCIKCYRNWNTK----S-------ESCPFCRGSMKRVNS 208 (258)
Q Consensus 160 ~~C~ICle~~~~-----~--vl~~C~H~FC~~Ci~~w~~~----~-------~~CP~CR~~l~~~~~ 208 (258)
..|+||...--+ . -...||..||.-|+..|+.. + ..||.|-.++....+
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS 232 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS 232 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence 468888743222 1 12359999999999999542 1 279999998875443
No 83
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.22 E-value=0.049 Score=48.66 Aligned_cols=46 Identities=24% Similarity=0.698 Sum_probs=33.5
Q ss_pred cCccccccCCCC------cceecCCCCcccHhhHHHHhcCCC-Ccc--ccccccc
Q 025079 159 EDECGICLEPCT------KMVLPNCCHAMCIKCYRNWNTKSE-SCP--FCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~------~~vl~~C~H~FC~~Ci~~w~~~~~-~CP--~CR~~l~ 204 (258)
+..||||..+-. .-+.|-|-|.+|.+|+.+.....+ .|| -|-.-+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 458999986422 133355999999999999866655 899 7876554
No 84
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.046 Score=52.15 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=32.0
Q ss_pred CcCccccccCCCCc---ceecCCCCcccHhhHHHHhc-----C---CCCcccccc
Q 025079 158 REDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT-----K---SESCPFCRG 201 (258)
Q Consensus 158 ~~~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~-----~---~~~CP~CR~ 201 (258)
.-..|.||++.... .+.+||+|.||..|+..+.. . .-.||-+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34789999987653 56677999999999988722 1 126877754
No 85
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.52 E-value=0.066 Score=51.60 Aligned_cols=37 Identities=27% Similarity=0.608 Sum_probs=32.0
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCC
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS 193 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~ 193 (258)
+++..|+||...+.+|++.+|+|..|..|....+.++
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQT 38 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcccC
Confidence 5678999999999999999999999999998765443
No 86
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.054 Score=47.55 Aligned_cols=40 Identities=30% Similarity=0.717 Sum_probs=32.7
Q ss_pred ccccccCCCCcceecCCCC-cccHhhHHHHhcCCCCccccccccc
Q 025079 161 ECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 161 ~C~ICle~~~~~vl~~C~H-~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.|-.|.+......+.||.| .+|..|-.. -..||+|+.+..
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 3999999988888889998 689999643 457999997654
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.38 E-value=0.092 Score=49.13 Aligned_cols=46 Identities=33% Similarity=0.779 Sum_probs=32.5
Q ss_pred cCccccccCCCCc---cee-cCCCCcccHhhHHHHhcC-CCCccccccccc
Q 025079 159 EDECGICLEPCTK---MVL-PNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~---~vl-~~C~H~FC~~Ci~~w~~~-~~~CP~CR~~l~ 204 (258)
++-|+.|+|++.. -.. -+||...|.-|....... ...||-||....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3459999997652 111 248888899998766443 459999998775
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.066 Score=49.49 Aligned_cols=46 Identities=26% Similarity=0.696 Sum_probs=32.6
Q ss_pred cCccccccCCCCc-ceecCCCCcccHhhHHHHhcCCCCccccccccccc
Q 025079 159 EDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 206 (258)
Q Consensus 159 ~~~C~ICle~~~~-~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~~ 206 (258)
...|.-|--.+.. ..+.+|.|.||.+|.+. ...+.||.|-..+.++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 3567777554442 44566999999999854 3357999998887654
No 89
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.082 Score=48.35 Aligned_cols=45 Identities=22% Similarity=0.622 Sum_probs=32.1
Q ss_pred ccccccCCCC-----cceecCCCCcccHhhHHHHhc-CCCCcccccccccc
Q 025079 161 ECGICLEPCT-----KMVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMKR 205 (258)
Q Consensus 161 ~C~ICle~~~-----~~vl~~C~H~FC~~Ci~~w~~-~~~~CP~CR~~l~~ 205 (258)
.|++|-.... ...+-+|+|..|.+|...... +...||-|-..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 5888875322 122236999999999988754 45699999877753
No 90
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.04 E-value=0.071 Score=35.90 Aligned_cols=42 Identities=26% Similarity=0.745 Sum_probs=25.7
Q ss_pred ccccccCCCCcceecCCC-CcccHhhHHHHhcCCCCccccccccc
Q 025079 161 ECGICLEPCTKMVLPNCC-HAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 161 ~C~ICle~~~~~vl~~C~-H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.|.-|.- .+..+..|. |-.|..|+..-+.++..||+|..++.
T Consensus 4 nCKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWF--ANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred cChhhhh--cCCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 4555653 334455586 88899999999999999999998886
No 91
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.00 E-value=0.077 Score=54.71 Aligned_cols=49 Identities=35% Similarity=0.776 Sum_probs=35.7
Q ss_pred CcCccccccCCCCc--ce--ecCCCCcccHhhHHHHhcCC-------CCccccccccccc
Q 025079 158 REDECGICLEPCTK--MV--LPNCCHAMCIKCYRNWNTKS-------ESCPFCRGSMKRV 206 (258)
Q Consensus 158 ~~~~C~ICle~~~~--~v--l~~C~H~FC~~Ci~~w~~~~-------~~CP~CR~~l~~~ 206 (258)
+..+|.||.+.+.. ++ -.+|-|+||..||..|...+ -.||.|+.....+
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~ 249 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTV 249 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccC
Confidence 34799999998763 22 24488999999999994332 2799998665543
No 92
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.63 E-value=0.13 Score=41.95 Aligned_cols=48 Identities=35% Similarity=0.850 Sum_probs=35.5
Q ss_pred CcCccccccCCCCc-cee---cCCCCcccHhhHHH-Hh--cCCCCcccccccccc
Q 025079 158 REDECGICLEPCTK-MVL---PNCCHAMCIKCYRN-WN--TKSESCPFCRGSMKR 205 (258)
Q Consensus 158 ~~~~C~ICle~~~~-~vl---~~C~H~FC~~Ci~~-w~--~~~~~CP~CR~~l~~ 205 (258)
.--+|.||.|...+ ..+ .-||-..|.-|... |. .....||.|+.+++.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 44799999987664 222 22999999999955 63 345699999999874
No 93
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.13 Score=47.82 Aligned_cols=46 Identities=20% Similarity=0.453 Sum_probs=36.2
Q ss_pred CCcCccccccCCCCc-ceecCCCCcccHhhHHHHhcCCCCccccccc
Q 025079 157 EREDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 202 (258)
Q Consensus 157 ~~~~~C~ICle~~~~-~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~ 202 (258)
.....|++|+....+ .++.--|-.||..|+-+.....+.||+=-.+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 445789999976654 4455569999999999998888999986444
No 94
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.59 E-value=0.049 Score=58.34 Aligned_cols=47 Identities=28% Similarity=0.673 Sum_probs=39.3
Q ss_pred CCcCccccccCCCC-cceecCCCCcccHhhHHHHhcCCCCcccccccc
Q 025079 157 EREDECGICLEPCT-KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 203 (258)
Q Consensus 157 ~~~~~C~ICle~~~-~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l 203 (258)
.....|.||.+... ...+..|||.+|..|...|+..+..||.|+...
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 34468999999877 455566999999999999999999999998433
No 95
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=0.18 Score=44.74 Aligned_cols=47 Identities=21% Similarity=0.543 Sum_probs=34.4
Q ss_pred CcCccccccCCCC--cceecCCCCcccHhhHHHHhcC--------CCCccccccccc
Q 025079 158 REDECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTK--------SESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~--~~vl~~C~H~FC~~Ci~~w~~~--------~~~CP~CR~~l~ 204 (258)
..-.|..|-.... +.+...|-|.||.+|+..|..+ .-.||.|..++.
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3456888876554 3455669999999999999432 238999988875
No 96
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=89.95 E-value=0.13 Score=42.16 Aligned_cols=36 Identities=22% Similarity=0.611 Sum_probs=25.6
Q ss_pred cCccccccCCCCc--cee-cCCC------CcccHhhHHHHhcCCC
Q 025079 159 EDECGICLEPCTK--MVL-PNCC------HAMCIKCYRNWNTKSE 194 (258)
Q Consensus 159 ~~~C~ICle~~~~--~vl-~~C~------H~FC~~Ci~~w~~~~~ 194 (258)
..||.||++.... +++ .+|+ |.||.+|+.+|....+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhcc
Confidence 4689999987664 222 3364 7899999999954333
No 97
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.44 E-value=0.23 Score=51.60 Aligned_cols=34 Identities=26% Similarity=0.540 Sum_probs=25.6
Q ss_pred CCCcCccccccCCCC--cceecCCCCcccHhhHHHH
Q 025079 156 LEREDECGICLEPCT--KMVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 156 ~~~~~~C~ICle~~~--~~vl~~C~H~FC~~Ci~~w 189 (258)
.+....|.+|.-++- .-.+-+|||.||..|+.+-
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 456678999987654 2344569999999999664
No 98
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=89.31 E-value=0.21 Score=33.44 Aligned_cols=38 Identities=26% Similarity=0.726 Sum_probs=23.3
Q ss_pred cccccCCCCc--ceecCCCC-----cccHhhHHHHhc--CCCCcccc
Q 025079 162 CGICLEPCTK--MVLPNCCH-----AMCIKCYRNWNT--KSESCPFC 199 (258)
Q Consensus 162 C~ICle~~~~--~vl~~C~H-----~FC~~Ci~~w~~--~~~~CP~C 199 (258)
|-||++.... +...||+- ..|.+|+.+|.. ++.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688865442 45666753 459999999965 45689887
No 99
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=87.95 E-value=0.48 Score=31.08 Aligned_cols=38 Identities=24% Similarity=0.650 Sum_probs=21.1
Q ss_pred cccccCCCCccee-c--CCCCcccHhhHHHHhcCCC--Ccccc
Q 025079 162 CGICLEPCTKMVL-P--NCCHAMCIKCYRNWNTKSE--SCPFC 199 (258)
Q Consensus 162 C~ICle~~~~~vl-~--~C~H~FC~~Ci~~w~~~~~--~CP~C 199 (258)
|.+|.+.....+. + .|+=.+|..|+..+..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6678777665443 2 4888999999988755544 79987
No 100
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.74 E-value=0.12 Score=52.45 Aligned_cols=46 Identities=26% Similarity=0.605 Sum_probs=37.4
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHH---hcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNW---NTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w---~~~~~~CP~CR~~l~ 204 (258)
..+|+||.+....++++.|-|.||..|+..- ......||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3689999999998888999999999998553 333568999997664
No 101
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=87.59 E-value=0.79 Score=48.95 Aligned_cols=58 Identities=26% Similarity=0.554 Sum_probs=40.4
Q ss_pred CcCccccccCCCCc-------ceecCCCCcccHhhHHH-HhcCCCCccccccccccccCCCceeecC
Q 025079 158 REDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSEDLWVLTC 216 (258)
Q Consensus 158 ~~~~C~ICle~~~~-------~vl~~C~H~FC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~~ 216 (258)
....|.||-+.... ...--|+---|..|++- ..+.++.||.|++..++.+ +..++..+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k-gsprv~gD 81 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK-GSPAILGD 81 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCcCcc
Confidence 34589999987542 33344676789999943 4678899999999998755 33344443
No 102
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=87.52 E-value=0.52 Score=35.02 Aligned_cols=51 Identities=24% Similarity=0.618 Sum_probs=20.9
Q ss_pred cCccccccCCCCc-------ceecCCCCcccHhhHHH-HhcCCCCccccccccccccCC
Q 025079 159 EDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSE 209 (258)
Q Consensus 159 ~~~C~ICle~~~~-------~vl~~C~H~FC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~ 209 (258)
...|.||-+..-. ...-.|+--.|..|++- ....++.||.|+.+.++...+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgs 67 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGS 67 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT-
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCC
Confidence 3579999876431 22344777789999954 467888999999988864433
No 103
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.41 E-value=0.39 Score=43.92 Aligned_cols=43 Identities=28% Similarity=0.608 Sum_probs=34.2
Q ss_pred cCccccccCCCC----cceecCCCCcccHhhHHHHhcCCCCcccccc
Q 025079 159 EDECGICLEPCT----KMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 201 (258)
Q Consensus 159 ~~~C~ICle~~~----~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~ 201 (258)
+..|+||.+... .+...+|||..|..|++.-...+-.||+|-+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 345999987543 3556679999999999887655589999987
No 104
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.67 E-value=0.2 Score=41.13 Aligned_cols=63 Identities=22% Similarity=0.569 Sum_probs=38.1
Q ss_pred CCCCCcCccccccCC-CCcceecC---CCCcccHhhHHHHhcCCC----CccccccccccccCCCceeecC
Q 025079 154 ADLEREDECGICLEP-CTKMVLPN---CCHAMCIKCYRNWNTKSE----SCPFCRGSMKRVNSEDLWVLTC 216 (258)
Q Consensus 154 ~~~~~~~~C~ICle~-~~~~vl~~---C~H~FC~~Ci~~w~~~~~----~CP~CR~~l~~~~~~~~~~~~~ 216 (258)
.....+..|.||... |.+.+--+ |.-.||.+|-.+-..+++ .|-+||....-+..+-.|....
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~~s 130 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFYNS 130 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHHhc
Confidence 345667899999853 44432222 333567777655544433 7999998776555555676543
No 105
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.86 E-value=0.53 Score=43.33 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=21.9
Q ss_pred CCCcccHhhHHHHhc-------------CCCCccccccccc
Q 025079 177 CCHAMCIKCYRNWNT-------------KSESCPFCRGSMK 204 (258)
Q Consensus 177 C~H~FC~~Ci~~w~~-------------~~~~CP~CR~~l~ 204 (258)
|....|.+|+.+|.. ++-.||+||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 566789999999843 3338999999886
No 106
>PLN02189 cellulose synthase
Probab=82.59 E-value=1.3 Score=47.29 Aligned_cols=57 Identities=23% Similarity=0.542 Sum_probs=39.7
Q ss_pred CcCccccccCCCCc-------ceecCCCCcccHhhHHH-HhcCCCCccccccccccccCCCceeec
Q 025079 158 REDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSEDLWVLT 215 (258)
Q Consensus 158 ~~~~C~ICle~~~~-------~vl~~C~H~FC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~ 215 (258)
....|.||-+.... ....-|+--.|..|++. ..+.+++||.|++..++.+ +..++..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k-gs~~v~g 97 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK-GSPRVEG 97 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc-CCCCcCC
Confidence 34589999987541 33344777789999944 3667889999999998755 3334433
No 107
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.02 E-value=0.89 Score=43.38 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=32.7
Q ss_pred cCccccccCCCC---cceecCCCCcccHhhHHHHhcCC---CCccccccc
Q 025079 159 EDECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGS 202 (258)
Q Consensus 159 ~~~C~ICle~~~---~~vl~~C~H~FC~~Ci~~w~~~~---~~CP~CR~~ 202 (258)
-+.|||=.+..+ +|....|||+.+.+-+.+...+. -+||.|-..
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 478998765433 46677799999999999975443 389999543
No 108
>PLN02436 cellulose synthase A
Probab=82.01 E-value=1.8 Score=46.23 Aligned_cols=50 Identities=24% Similarity=0.689 Sum_probs=36.8
Q ss_pred CcCccccccCCCCc-------ceecCCCCcccHhhHHH-HhcCCCCcccccccccccc
Q 025079 158 REDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVN 207 (258)
Q Consensus 158 ~~~~C~ICle~~~~-------~vl~~C~H~FC~~Ci~~-w~~~~~~CP~CR~~l~~~~ 207 (258)
....|.||-+.... ...--|+--.|..|++. ..+.+++||.|++..++.+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 34589999987531 33334777789999944 3567889999999998755
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.68 E-value=0.76 Score=43.97 Aligned_cols=34 Identities=29% Similarity=0.773 Sum_probs=24.5
Q ss_pred CcCcccccc-CCCCc---ceecCCCCcccHhhHHHHhc
Q 025079 158 REDECGICL-EPCTK---MVLPNCCHAMCIKCYRNWNT 191 (258)
Q Consensus 158 ~~~~C~ICl-e~~~~---~vl~~C~H~FC~~Ci~~w~~ 191 (258)
...+|.||+ +.... .....|+|.||..|..+...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 457899999 44332 22456999999999987644
No 110
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=79.83 E-value=2.5 Score=45.20 Aligned_cols=58 Identities=21% Similarity=0.450 Sum_probs=40.5
Q ss_pred CcCccccccCCCCc-------ceecCCCCcccHhhHHH-HhcCCCCccccccccccccCCCceeecC
Q 025079 158 REDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSEDLWVLTC 216 (258)
Q Consensus 158 ~~~~C~ICle~~~~-------~vl~~C~H~FC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~~ 216 (258)
....|.||-+.... ...--|+--.|..|++- ..+.++.||.|+...++.. +..++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~-~~~~~~~d 79 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK-GCPRVEGD 79 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCccCC
Confidence 34689999986542 33334777789999943 3677889999999998755 44455544
No 111
>PLN02400 cellulose synthase
Probab=79.45 E-value=2.1 Score=45.86 Aligned_cols=57 Identities=21% Similarity=0.535 Sum_probs=39.3
Q ss_pred CcCccccccCCCCc-------ceecCCCCcccHhhHHH-HhcCCCCccccccccccccCCCceeec
Q 025079 158 REDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSEDLWVLT 215 (258)
Q Consensus 158 ~~~~C~ICle~~~~-------~vl~~C~H~FC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~ 215 (258)
....|.||-+.... ...-.|+---|..|++- ..+.+++||.|+...++.. +..++..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K-gsprV~G 99 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK-GSPRVEG 99 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc-CCCCCCc
Confidence 34589999987542 33344676789999943 4677889999999998754 3334433
No 112
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.94 E-value=0.76 Score=46.45 Aligned_cols=36 Identities=33% Similarity=0.702 Sum_probs=27.5
Q ss_pred CccccccCCCC----cceecCCCCcccHhhHHHHhcCCCCcc
Q 025079 160 DECGICLEPCT----KMVLPNCCHAMCIKCYRNWNTKSESCP 197 (258)
Q Consensus 160 ~~C~ICle~~~----~~vl~~C~H~FC~~Ci~~w~~~~~~CP 197 (258)
..|.||+..+. .++.+.|||+.|..|++..- +.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 57999976554 37777799999999997743 35788
No 113
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.73 E-value=1.5 Score=42.57 Aligned_cols=36 Identities=25% Similarity=0.744 Sum_probs=29.5
Q ss_pred CCcCccccccCCCCc-ceecCCCCcccHhhHHHHhcC
Q 025079 157 EREDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTK 192 (258)
Q Consensus 157 ~~~~~C~ICle~~~~-~vl~~C~H~FC~~Ci~~w~~~ 192 (258)
....+|.||.+.... .....|||.||..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 455799999998874 667789999999999887543
No 114
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=76.41 E-value=0.65 Score=42.46 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCcCccccccCCCCcceec-----CCCCcccHhhHHHHhcCCCCccccccc
Q 025079 157 EREDECGICLEPCTKMVLP-----NCCHAMCIKCYRNWNTKSESCPFCRGS 202 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~-----~C~H~FC~~Ci~~w~~~~~~CP~CR~~ 202 (258)
+....||||-....-.++. .=.|.+|.-|-.+|...+..||.|-..
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 4457999999876543322 235788999999999988999999543
No 115
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.20 E-value=1.2 Score=40.30 Aligned_cols=52 Identities=25% Similarity=0.480 Sum_probs=35.1
Q ss_pred CCcCccccccCCCCcc----eecCC-----CCcccHhhHHHHhcCC--------CCccccccccccccC
Q 025079 157 EREDECGICLEPCTKM----VLPNC-----CHAMCIKCYRNWNTKS--------ESCPFCRGSMKRVNS 208 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~----vl~~C-----~H~FC~~Ci~~w~~~~--------~~CP~CR~~l~~~~~ 208 (258)
+.|.-|-||+..-++- -+-|| .|.-|..|+..|.... -+||.|+.+...+-+
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P 86 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFP 86 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecc
Confidence 4567899999765531 22346 3667999999994322 289999988764433
No 116
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.05 E-value=2.3 Score=38.40 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHH
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w 189 (258)
..-.-|+.|+.++.+|++++=||.||.+||.+.
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEY 73 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHH
Confidence 344679999999999999999999999999876
No 117
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.92 E-value=1.9 Score=44.64 Aligned_cols=31 Identities=16% Similarity=0.475 Sum_probs=24.1
Q ss_pred ecCCCCcccHhhHHHHhcC------CCCccccccccc
Q 025079 174 LPNCCHAMCIKCYRNWNTK------SESCPFCRGSMK 204 (258)
Q Consensus 174 l~~C~H~FC~~Ci~~w~~~------~~~CP~CR~~l~ 204 (258)
+..|+|.||..||..|..+ .-.|++|...|.
T Consensus 118 ~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 118 VQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred hhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3459999999999999543 227899988775
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.52 E-value=1.8 Score=41.47 Aligned_cols=39 Identities=28% Similarity=0.709 Sum_probs=29.4
Q ss_pred CccccccCCCC------cceecCCCCcccHhhHHHHhcCCCCcccc
Q 025079 160 DECGICLEPCT------KMVLPNCCHAMCIKCYRNWNTKSESCPFC 199 (258)
Q Consensus 160 ~~C~ICle~~~------~~vl~~C~H~FC~~Ci~~w~~~~~~CP~C 199 (258)
..|++|.-... ..... |||.||..|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 57888864433 25556 99999999999998888877544
No 119
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.98 E-value=2.3 Score=43.94 Aligned_cols=26 Identities=23% Similarity=0.612 Sum_probs=22.6
Q ss_pred eecCCCCcccHhhHHHHhcCCCCccc
Q 025079 173 VLPNCCHAMCIKCYRNWNTKSESCPF 198 (258)
Q Consensus 173 vl~~C~H~FC~~Ci~~w~~~~~~CP~ 198 (258)
+...|+|..|.+|...|.....+||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 34459999999999999999899985
No 120
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=68.75 E-value=1.8 Score=40.27 Aligned_cols=44 Identities=18% Similarity=0.432 Sum_probs=33.1
Q ss_pred CcCccccccCCCCccee-----cCCCCcccHhhHHHHhcCCCCcccccc
Q 025079 158 REDECGICLEPCTKMVL-----PNCCHAMCIKCYRNWNTKSESCPFCRG 201 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl-----~~C~H~FC~~Ci~~w~~~~~~CP~CR~ 201 (258)
....|++|-......++ ..=.|..|.-|-..|...+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45789999887543222 123467799999999999999999975
No 121
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=68.32 E-value=4.3 Score=27.38 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=19.3
Q ss_pred CccccccCCCCccee-cCCCCcccHhhHHHHh-----cCCCCccccccc
Q 025079 160 DECGICLEPCTKMVL-PNCCHAMCIKCYRNWN-----TKSESCPFCRGS 202 (258)
Q Consensus 160 ~~C~ICle~~~~~vl-~~C~H~FC~~Ci~~w~-----~~~~~CP~CR~~ 202 (258)
..|+|....+..|+. ..|.|.-|.+= ..|+ ...-.||.|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 579999888877665 57999866543 2232 222379999763
No 122
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.06 E-value=2.1 Score=39.31 Aligned_cols=34 Identities=24% Similarity=0.555 Sum_probs=26.6
Q ss_pred cCccccccCCCCcceecCC----CCcccHhhHHHHhcC
Q 025079 159 EDECGICLEPCTKMVLPNC----CHAMCIKCYRNWNTK 192 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C----~H~FC~~Ci~~w~~~ 192 (258)
...|.+|.|..++.-...| .|.||..|-++-.++
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 3789999999887555556 699999999876443
No 123
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.90 E-value=0.55 Score=44.77 Aligned_cols=47 Identities=19% Similarity=0.414 Sum_probs=38.2
Q ss_pred cCccccccCCCCc----ceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 159 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
...|+||.+.... ..-..|||.++..|+++|+.....||.||..+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 3579999876542 3334599999999999999988899999998863
No 124
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=63.66 E-value=5.3 Score=41.69 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=35.1
Q ss_pred cCccccccCCCC--cceecCCCC-----cccHhhHHHHhcCC--CCcccccccccc
Q 025079 159 EDECGICLEPCT--KMVLPNCCH-----AMCIKCYRNWNTKS--ESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~--~~vl~~C~H-----~FC~~Ci~~w~~~~--~~CP~CR~~l~~ 205 (258)
+..|-||...-. +|..-||.. -.|.+|+.+|...+ ..|-+|..+++.
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 378999985433 466666764 26999999997655 489999988874
No 125
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=63.38 E-value=2.4 Score=39.43 Aligned_cols=44 Identities=20% Similarity=0.490 Sum_probs=32.8
Q ss_pred cCccccccCCCCccee------cCCCCcccHhhHHHHhcCCCCccccccc
Q 025079 159 EDECGICLEPCTKMVL------PNCCHAMCIKCYRNWNTKSESCPFCRGS 202 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl------~~C~H~FC~~Ci~~w~~~~~~CP~CR~~ 202 (258)
...|+||-......++ ..=.|..|.-|-.+|...+..||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 4589999987643222 1124678999999999999999999753
No 126
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=62.48 E-value=6.6 Score=36.75 Aligned_cols=48 Identities=27% Similarity=0.666 Sum_probs=31.3
Q ss_pred CCcCccccccCCCC-------------------cceecCCCCcccHhhHHHHhcC---------CCCccccccccc
Q 025079 157 EREDECGICLEPCT-------------------KMVLPNCCHAMCIKCYRNWNTK---------SESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~-------------------~~vl~~C~H~FC~~Ci~~w~~~---------~~~CP~CR~~l~ 204 (258)
..+.+|++|+..-. .-...||||.--.+=..-|... ...||+|-..+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 44689999985321 1233569996555666778431 238999987774
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=62.47 E-value=5.7 Score=37.16 Aligned_cols=45 Identities=29% Similarity=0.726 Sum_probs=35.4
Q ss_pred CccccccCCCC---cceec-CCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 160 DECGICLEPCT---KMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~---~~vl~-~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..|+||-+... ...+| +|+|..|..|...-.....+||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 68999998653 23332 58899999999888888889999997665
No 128
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=58.47 E-value=2.9 Score=28.60 Aligned_cols=19 Identities=26% Similarity=1.010 Sum_probs=15.3
Q ss_pred eecCCCCcccHhhHHHHhc
Q 025079 173 VLPNCCHAMCIKCYRNWNT 191 (258)
Q Consensus 173 vl~~C~H~FC~~Ci~~w~~ 191 (258)
.-+.|+|.||..|..+|..
T Consensus 42 ~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 42 TCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred ECCCCCCeECCCCCCcCCC
Confidence 3346999999999998854
No 129
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=58.36 E-value=11 Score=35.34 Aligned_cols=47 Identities=6% Similarity=-0.169 Sum_probs=36.7
Q ss_pred CCCCcCccccccCCCCcceecCCCC-cccHhhHHHHhcCCCCcccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSM 203 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H-~FC~~Ci~~w~~~~~~CP~CR~~l 203 (258)
..-...+|-.|-+..-..+..+|+| .||.+|.. ..-+.+||.|....
T Consensus 339 ~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred cchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 3445578999988877778888999 57999987 56677999996543
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=56.91 E-value=7.5 Score=40.22 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=31.1
Q ss_pred ccccccCCCCc--ceecCCCCcccHhhHHHHhcCCCCccc--ccc
Q 025079 161 ECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPF--CRG 201 (258)
Q Consensus 161 ~C~ICle~~~~--~vl~~C~H~FC~~Ci~~w~~~~~~CP~--CR~ 201 (258)
.|.+|-..... .-...|||.-|.+|+.+|......||. |-.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 56777655443 233569999999999999999999988 643
No 131
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=55.44 E-value=8.7 Score=26.27 Aligned_cols=27 Identities=30% Similarity=0.760 Sum_probs=16.6
Q ss_pred ecCCCCcccHhhHHHHhcCCCCccccc
Q 025079 174 LPNCCHAMCIKCYRNWNTKSESCPFCR 200 (258)
Q Consensus 174 l~~C~H~FC~~Ci~~w~~~~~~CP~CR 200 (258)
-+.|++.||.+|=.=..+.-..||-|-
T Consensus 24 C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCCCccccCcChhhhccccCCcCCC
Confidence 467999999999755556667899884
No 132
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.41 E-value=8.8 Score=39.31 Aligned_cols=45 Identities=27% Similarity=0.654 Sum_probs=36.3
Q ss_pred ccccccCCCCcceecCCCC-cccHhhHHHHh--cC----CCCcccccccccc
Q 025079 161 ECGICLEPCTKMVLPNCCH-AMCIKCYRNWN--TK----SESCPFCRGSMKR 205 (258)
Q Consensus 161 ~C~ICle~~~~~vl~~C~H-~FC~~Ci~~w~--~~----~~~CP~CR~~l~~ 205 (258)
.|+||-....-....+||| .-|..|..+.. .. ...||.||..+..
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 5999998888888899999 89999997762 23 4578999987653
No 133
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=54.14 E-value=6.5 Score=34.72 Aligned_cols=43 Identities=16% Similarity=0.512 Sum_probs=34.9
Q ss_pred cCccccccCCCCc-ceecCCCCcccHhhHHHHhcCCCCcccccc
Q 025079 159 EDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKSESCPFCRG 201 (258)
Q Consensus 159 ~~~C~ICle~~~~-~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~ 201 (258)
-.+|.+|...... ....+|+-.+|..|+...+.+...||.|..
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 3589999986554 445668888999999999999999999953
No 134
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.14 E-value=13 Score=29.62 Aligned_cols=41 Identities=27% Similarity=0.527 Sum_probs=31.5
Q ss_pred CccccccCCCCcc--------------eecCCCCcccHhhHHHHhcCCCCccccc
Q 025079 160 DECGICLEPCTKM--------------VLPNCCHAMCIKCYRNWNTKSESCPFCR 200 (258)
Q Consensus 160 ~~C~ICle~~~~~--------------vl~~C~H~FC~~Ci~~w~~~~~~CP~CR 200 (258)
..|--|...+..+ .-+.|.+.||.+|=.-+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588887766532 2567999999999877777777899995
No 135
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=50.27 E-value=8.2 Score=27.83 Aligned_cols=12 Identities=25% Similarity=1.019 Sum_probs=8.2
Q ss_pred cccHhhHHHHhc
Q 025079 180 AMCIKCYRNWNT 191 (258)
Q Consensus 180 ~FC~~Ci~~w~~ 191 (258)
.||..|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999953
No 136
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=49.70 E-value=9.8 Score=35.61 Aligned_cols=42 Identities=24% Similarity=0.511 Sum_probs=31.1
Q ss_pred cCccccccCCCC---cceecCCCCcccHhhHHHHhcCC---CCccccc
Q 025079 159 EDECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKS---ESCPFCR 200 (258)
Q Consensus 159 ~~~C~ICle~~~---~~vl~~C~H~FC~~Ci~~w~~~~---~~CP~CR 200 (258)
-+.||+=-|..+ .|+...|||..-.+-+++...+. -.||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 467887655433 47778899999999998875443 3899994
No 137
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.50 E-value=5.8 Score=33.68 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=19.3
Q ss_pred CCcCccccccCCCCc---ceecCCCCcccH
Q 025079 157 EREDECGICLEPCTK---MVLPNCCHAMCI 183 (258)
Q Consensus 157 ~~~~~C~ICle~~~~---~vl~~C~H~FC~ 183 (258)
...-||.||+|+... ....||-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 344799999998874 444568877764
No 138
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=49.43 E-value=5.6 Score=38.22 Aligned_cols=46 Identities=22% Similarity=0.626 Sum_probs=0.0
Q ss_pred cCccccccCCCC-------------------cceecCCCCcccHhhHHHHhcC---------CCCccccccccc
Q 025079 159 EDECGICLEPCT-------------------KMVLPNCCHAMCIKCYRNWNTK---------SESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~-------------------~~vl~~C~H~FC~~Ci~~w~~~---------~~~CP~CR~~l~ 204 (258)
+.+|++|+..-. .-+..||||.--.+...-|..- +..||+|-.+|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 679999985321 1233469998777888899431 238999988875
No 139
>PLN02195 cellulose synthase A
Probab=47.88 E-value=17 Score=38.84 Aligned_cols=46 Identities=20% Similarity=0.501 Sum_probs=33.8
Q ss_pred cCccccccCCCCc-------ceecCCCCcccHhhHHH-HhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~-------~vl~~C~H~FC~~Ci~~-w~~~~~~CP~CR~~l~ 204 (258)
...|.||-+.... ...--|+---|..|++- -.+.++.||.|+...+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 3579999875431 33344787889999943 2567889999998887
No 140
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.43 E-value=4.9 Score=22.78 Aligned_cols=21 Identities=24% Similarity=0.673 Sum_probs=10.4
Q ss_pred cHhhHHHHhcCCCCccccccc
Q 025079 182 CIKCYRNWNTKSESCPFCRGS 202 (258)
Q Consensus 182 C~~Ci~~w~~~~~~CP~CR~~ 202 (258)
|..|-.+.....+-||.|-.+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 444444444445556666543
No 141
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.80 E-value=16 Score=33.17 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=33.6
Q ss_pred CcCccccccCCCC----cceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 158 REDECGICLEPCT----KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~----~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..+.|+|---.+. -..+-+|||.|-.+-+.+.. +..|+.|.+.+.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~ 158 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQ 158 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccc
Confidence 3478998643333 36677899999998887743 679999998775
No 142
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.41 E-value=10 Score=37.82 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=35.2
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+....|.||.+.. ....++|. +..|+..|+..+..||+|+..+.
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhh
Confidence 4457899998877 44455687 67899999999999999998776
No 143
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=46.19 E-value=14 Score=32.94 Aligned_cols=25 Identities=20% Similarity=0.752 Sum_probs=21.0
Q ss_pred ccHhhHHHHhcCCCCcccccccccc
Q 025079 181 MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 181 FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
-|..|-.+...+...||+|++.-..
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRS 220 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRS 220 (230)
T ss_pred hhHhHHHHHhcCCCCCccccccccc
Confidence 4889999999999999999876543
No 144
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=45.64 E-value=4.9 Score=28.39 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=22.7
Q ss_pred CccccccccccccCCCceeecCCCCccCCcccchHHHHHHHHHhhcCCCCCcch
Q 025079 195 SCPFCRGSMKRVNSEDLWVLTCTDDVIDPETVSKEDLLRFYLYINSLPKDYPDA 248 (258)
Q Consensus 195 ~CP~CR~~l~~~~~~~~~~~~~~~d~vd~~~i~~E~l~Rl~~~i~~lP~~~p~~ 248 (258)
.||.||.++....... ++.-...++.|--.+-+|..+|+-
T Consensus 10 aCP~~kg~L~~~~~~~--------------~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 10 ACPVCKGPLVYDEEKQ--------------ELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred eccCcCCcceEeccCC--------------EEEecccCceeecccCccccCchh
Confidence 5899988875322222 122233445666666677777664
No 145
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.43 E-value=2 Score=31.35 Aligned_cols=43 Identities=21% Similarity=0.536 Sum_probs=23.5
Q ss_pred CccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 207 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~~~ 207 (258)
..|+.|...+.... +|..|..|-... .....||-|..++..+.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~-~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDY-KKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EE-EEEEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEeC----CEEECccccccc-eecccCCCcccHHHHHH
Confidence 57999987643221 788899997653 23358999999997543
No 146
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=43.62 E-value=19 Score=28.15 Aligned_cols=24 Identities=38% Similarity=0.751 Sum_probs=17.2
Q ss_pred CCcccHhhHHHHhc---------CCCCcccccc
Q 025079 178 CHAMCIKCYRNWNT---------KSESCPFCRG 201 (258)
Q Consensus 178 ~H~FC~~Ci~~w~~---------~~~~CP~CR~ 201 (258)
.=.||..|+..+.. ..-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 55799999966532 2237999986
No 147
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=43.61 E-value=17 Score=32.88 Aligned_cols=47 Identities=19% Similarity=0.581 Sum_probs=34.3
Q ss_pred cCccccccCCCCc----ceecCCC-----CcccHhhHHHHhc--CCCCcccccccccc
Q 025079 159 EDECGICLEPCTK----MVLPNCC-----HAMCIKCYRNWNT--KSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~----~vl~~C~-----H~FC~~Ci~~w~~--~~~~CP~CR~~l~~ 205 (258)
+..|-||.+.... +...||. +..|..|+..|.. ++..|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4689999985542 3556674 3459999999976 56689999876653
No 148
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=43.50 E-value=7.4 Score=27.39 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=16.3
Q ss_pred cCccccccCCCCc----ceecCCCCcccHhhHHHH
Q 025079 159 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 159 ~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w 189 (258)
...|.+|...|.. -.-..||+.||.+|....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 4689999988753 233569999999998654
No 149
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.77 E-value=3.9 Score=37.18 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=32.2
Q ss_pred CccccccCCCC------cceecC--------CCCcccHhhHHHHhcCC-CCccccccc
Q 025079 160 DECGICLEPCT------KMVLPN--------CCHAMCIKCYRNWNTKS-ESCPFCRGS 202 (258)
Q Consensus 160 ~~C~ICle~~~------~~vl~~--------C~H~FC~~Ci~~w~~~~-~~CP~CR~~ 202 (258)
..|.||...+. .+.+.. |||..|..|+..-+.+. ..||+||..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 57999976544 244455 99999999998875444 599999864
No 150
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=42.72 E-value=2.3 Score=33.78 Aligned_cols=46 Identities=28% Similarity=0.599 Sum_probs=30.2
Q ss_pred CcCccccccCCCC-----cceecCCCCcccHhhHHHHhcCCC--Cccccccccc
Q 025079 158 REDECGICLEPCT-----KMVLPNCCHAMCIKCYRNWNTKSE--SCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~-----~~vl~~C~H~FC~~Ci~~w~~~~~--~CP~CR~~l~ 204 (258)
.+..|.+|...+. ......|+|.+|.+|-.. ..+.. .|.+|...-.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~re 105 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQRE 105 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHHHH
Confidence 4568999987653 355677999999999755 21222 7999976443
No 151
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=42.32 E-value=18 Score=32.41 Aligned_cols=24 Identities=21% Similarity=0.881 Sum_probs=20.4
Q ss_pred ccHhhHHHHhcCCCCccccccccc
Q 025079 181 MCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 181 FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
-|.+|-.+...+...||+|+..-.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccc
Confidence 588999998888999999987654
No 152
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.29 E-value=7.5 Score=36.07 Aligned_cols=50 Identities=30% Similarity=0.642 Sum_probs=40.3
Q ss_pred CCcCccccccCCCCccee-cCCCCcccHhhHHHHhcCCCCccccccccccc
Q 025079 157 EREDECGICLEPCTKMVL-PNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 206 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl-~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~~ 206 (258)
.....|-||......+.+ ..|+|.||..|...|....+-||-||...+.+
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 345689999887765444 45999999999999999999999999887644
No 153
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=42.28 E-value=8.2 Score=24.95 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=17.0
Q ss_pred cCCCCcccHhhHHHHhcCCCCcccccc-cccc
Q 025079 175 PNCCHAMCIKCYRNWNTKSESCPFCRG-SMKR 205 (258)
Q Consensus 175 ~~C~H~FC~~Ci~~w~~~~~~CP~CR~-~l~~ 205 (258)
..|||.|-...-.. -.....||.|.. .+.+
T Consensus 9 ~~Cg~~fe~~~~~~-~~~~~~CP~Cg~~~~~r 39 (42)
T PF09723_consen 9 EECGHEFEVLQSIS-EDDPVPCPECGSTEVRR 39 (42)
T ss_pred CCCCCEEEEEEEcC-CCCCCcCCCCCCCceEE
Confidence 45888775432111 123448999987 5544
No 154
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=41.07 E-value=11 Score=38.14 Aligned_cols=23 Identities=39% Similarity=0.882 Sum_probs=17.6
Q ss_pred cCCCCcccHhhHHHHhcCCCCccccc
Q 025079 175 PNCCHAMCIKCYRNWNTKSESCPFCR 200 (258)
Q Consensus 175 ~~C~H~FC~~Ci~~w~~~~~~CP~CR 200 (258)
..|++.||..|... .+.-||.|-
T Consensus 535 ~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred HHHHHHHHHHHHhc---cCCCCCchH
Confidence 34999999999654 455599994
No 155
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK04023 DNA polymerase II large subunit; Validated
Probab=38.39 E-value=20 Score=38.56 Aligned_cols=44 Identities=18% Similarity=0.415 Sum_probs=32.5
Q ss_pred cCccccccCCCCcceecCCCC-----cccHhhHHHHhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCH-----AMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H-----~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
...|+-|-........+.||. .||.+|- +......||-|...+.
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPT 674 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCC
Confidence 367888887766667788984 5999993 3344568999987765
No 157
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.16 E-value=14 Score=24.99 Aligned_cols=10 Identities=30% Similarity=1.145 Sum_probs=5.6
Q ss_pred Cccccccccc
Q 025079 195 SCPFCRGSMK 204 (258)
Q Consensus 195 ~CP~CR~~l~ 204 (258)
.||+|..+|.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999999886
No 158
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=36.86 E-value=25 Score=33.13 Aligned_cols=41 Identities=20% Similarity=0.475 Sum_probs=27.6
Q ss_pred CccccccCCCCc---ceecCCCCcccHhhHHHHhcCCCCccccc
Q 025079 160 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCR 200 (258)
Q Consensus 160 ~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR 200 (258)
..|-.|.+.... .....|.|.||.+|=.-..+.-..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 447788554332 34466889999999765555556899885
No 159
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.72 E-value=10 Score=22.19 Aligned_cols=7 Identities=43% Similarity=1.426 Sum_probs=2.9
Q ss_pred CCCcccc
Q 025079 193 SESCPFC 199 (258)
Q Consensus 193 ~~~CP~C 199 (258)
.+.||.|
T Consensus 14 ~~~Cp~C 20 (26)
T PF10571_consen 14 AKFCPHC 20 (26)
T ss_pred cCcCCCC
Confidence 3344444
No 160
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=36.42 E-value=20 Score=24.19 Aligned_cols=37 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHhc--CCCCccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT--KSESCPFCRGS 202 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~--~~~~CP~CR~~ 202 (258)
...||.|-+.+....+ +. .|...-.. ..-.||+|...
T Consensus 2 ~f~CP~C~~~~~~~~L--~~-----H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL--VE-----HCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHHHH--HH-----HHHhHCcCCCCCccCCCchhh
Confidence 4679999885544322 22 33333222 23489999753
No 161
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=36.09 E-value=26 Score=30.36 Aligned_cols=38 Identities=29% Similarity=0.670 Sum_probs=26.5
Q ss_pred cCccccccCC-----CCc---ceecCCCCcccHhhHHHHhcCCCCcccccc
Q 025079 159 EDECGICLEP-----CTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRG 201 (258)
Q Consensus 159 ~~~C~ICle~-----~~~---~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~ 201 (258)
...|.+|-+. |.. ..-+.|+-.||..|..+ ..||-|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 3678999753 221 33467999999999752 67999953
No 162
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=35.06 E-value=15 Score=38.49 Aligned_cols=46 Identities=26% Similarity=0.746 Sum_probs=32.7
Q ss_pred cCccccccCCCC--cceecCCCCcccHhhHHHHhcC------CCCccccccccc
Q 025079 159 EDECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTK------SESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~--~~vl~~C~H~FC~~Ci~~w~~~------~~~CP~CR~~l~ 204 (258)
...|..|..... .=+.+.|+|.+|..|++.|..+ ...|++|+..=.
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 357889976443 3556779999999999999411 237898876543
No 163
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=34.10 E-value=28 Score=23.14 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=12.6
Q ss_pred ccchhHHHHHHhhccchHHHHHHHHHhHHHHHHH
Q 025079 3 RVRDMEVMYYQLAKSSYQDSLKVLEADIQHANAL 36 (258)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~di~~an~l 36 (258)
.|+|||. +| |=.|.-||..||+-
T Consensus 4 EVkDMEi-----Ak------LMSLGLsid~A~~y 26 (46)
T PF09145_consen 4 EVKDMEI-----AK------LMSLGLSIDKANDY 26 (46)
T ss_dssp HHHHHHH-----HH------HHHH---SHHHHHH
T ss_pred HHHHHHH-----HH------HHHccCCHHHHHHH
Confidence 5889997 22 33456677777753
No 164
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=33.97 E-value=29 Score=23.14 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=21.4
Q ss_pred CccccccCCCCc----ceecCCCCcccHhhHHHH
Q 025079 160 DECGICLEPCTK----MVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 160 ~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w 189 (258)
..|.+|-..|.. ..-..||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 468888765552 334569999999998654
No 165
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=33.38 E-value=35 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.608 Sum_probs=23.3
Q ss_pred CccccccCCCC--c--ceecCCCCcccHhhHHH
Q 025079 160 DECGICLEPCT--K--MVLPNCCHAMCIKCYRN 188 (258)
Q Consensus 160 ~~C~ICle~~~--~--~vl~~C~H~FC~~Ci~~ 188 (258)
..|.+|-+.+. + .+-+.|+-.+|..|..+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 57999999884 2 55688999999999754
No 166
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=33.12 E-value=33 Score=23.95 Aligned_cols=26 Identities=27% Similarity=0.813 Sum_probs=20.5
Q ss_pred CC--CcccHhhHHHHhcCCCCccccccccc
Q 025079 177 CC--HAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 177 C~--H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
|. .+||..|....+ ...||-|-..+.
T Consensus 25 CSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 25 CSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred EeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 55 479999998865 468999987764
No 167
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=32.64 E-value=8.1 Score=26.24 Aligned_cols=19 Identities=32% Similarity=0.978 Sum_probs=15.2
Q ss_pred eecCCCCcccHhhHHHHhc
Q 025079 173 VLPNCCHAMCIKCYRNWNT 191 (258)
Q Consensus 173 vl~~C~H~FC~~Ci~~w~~ 191 (258)
.-+.|++.||..|-.+|..
T Consensus 42 ~C~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 42 TCPSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp CTTSCCSEECSSSTSESCT
T ss_pred ECCCCCCcCccccCcccCC
Confidence 3456999999999988854
No 168
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.21 E-value=41 Score=36.27 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=28.0
Q ss_pred chHHHHHHHHHhHHHHHHH-------HHhCCCcCCCceEEEEEeecCc
Q 025079 18 SYQDSLKVLEADIQHANAL-------AAAIPRAKGGARLQMKLVYDHW 58 (258)
Q Consensus 18 ~~~~~~~~~~~di~~an~l-------a~~~p~~~~g~~~qm~l~y~~~ 58 (258)
-|+.||+.|.+||-|||+| |.+. +|. ..+|..|.-.++
T Consensus 653 mf~~SL~rLr~~iv~AN~LVrEAN~laeEm--~Kk-T~y~VTLQIPaa 697 (1714)
T KOG0241|consen 653 MFRQSLARLREQIVKANTLVREANFLAEEM--SKK-TDYQVTLQIPAA 697 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhc-cceeEEEEcchh
Confidence 4999999999999999998 4443 333 467777766443
No 169
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.04 E-value=15 Score=38.18 Aligned_cols=40 Identities=25% Similarity=0.586 Sum_probs=27.7
Q ss_pred cCccccccCCCC-------cceecCCCCcccHhhHHHHhcCCCCcccc
Q 025079 159 EDECGICLEPCT-------KMVLPNCCHAMCIKCYRNWNTKSESCPFC 199 (258)
Q Consensus 159 ~~~C~ICle~~~-------~~vl~~C~H~FC~~Ci~~w~~~~~~CP~C 199 (258)
+..|.-|+++.. ..+...|||.||..|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 348999998654 345566999999999966544444 5444
No 170
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=30.89 E-value=31 Score=20.47 Aligned_cols=34 Identities=24% Similarity=0.602 Sum_probs=19.1
Q ss_pred cccccCCCCc--ceecCCCCcccHhhHHHHhcCCCCcccccccc
Q 025079 162 CGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 203 (258)
Q Consensus 162 C~ICle~~~~--~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l 203 (258)
|..|-+.+.. ..+..=+..||..|. .|..|+.+|
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccCC--------CCcccCCcC
Confidence 6667665544 333323556666664 567776655
No 171
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=29.86 E-value=16 Score=34.62 Aligned_cols=14 Identities=14% Similarity=0.555 Sum_probs=10.5
Q ss_pred CCcCccccccCCCC
Q 025079 157 EREDECGICLEPCT 170 (258)
Q Consensus 157 ~~~~~C~ICle~~~ 170 (258)
..++-|++|-+..+
T Consensus 13 dl~ElCPVCGDkVS 26 (475)
T KOG4218|consen 13 DLGELCPVCGDKVS 26 (475)
T ss_pred ccccccccccCccc
Confidence 44568999998766
No 172
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=29.11 E-value=15 Score=22.10 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=11.4
Q ss_pred CCcccHhhHHHHh----cCCCCcccccc
Q 025079 178 CHAMCIKCYRNWN----TKSESCPFCRG 201 (258)
Q Consensus 178 ~H~FC~~Ci~~w~----~~~~~CP~CR~ 201 (258)
.|.||..|-.+-. .....||-|..
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcC
Confidence 3778888875532 12236777764
No 173
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=28.02 E-value=57 Score=30.12 Aligned_cols=85 Identities=21% Similarity=0.386 Sum_probs=50.5
Q ss_pred CCcCccccccCCCCccee-c---CCC--CcccHhhHHHHhcCCCCccccccccccccCCCceeecC-CCCccCCcccchH
Q 025079 157 EREDECGICLEPCTKMVL-P---NCC--HAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLTC-TDDVIDPETVSKE 229 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl-~---~C~--H~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~~-~~d~vd~~~i~~E 229 (258)
+.-..|++|-......++ . .-| ..-|.-|...|...+.+|--|-.. ..-+.|.+.. ....|.+++-.+=
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t----~~l~y~sl~s~E~A~vkAEtC~~C 258 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQS----KKLHYWSLESSELAAVKAETCGDC 258 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhcccccc----CCccceeccchhhhHhhhhcCCcH
Confidence 455789999986654222 1 122 234899999999988999999643 3345566665 3334444433222
Q ss_pred H-HHHHHHHhhcCCCCCc
Q 025079 230 D-LLRFYLYINSLPKDYP 246 (258)
Q Consensus 230 ~-l~Rl~~~i~~lP~~~p 246 (258)
+ ..++ .|.+|-|...+
T Consensus 259 ~sYlKi-lyqekdp~vea 275 (308)
T COG3058 259 NSYLKI-LYQEKDPKVEA 275 (308)
T ss_pred HHHHHH-HHHhcCCcccc
Confidence 2 2222 46667777655
No 174
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.17 E-value=21 Score=34.66 Aligned_cols=35 Identities=23% Similarity=0.644 Sum_probs=26.4
Q ss_pred cceecCCCCcccHhhHHHHhc--------------------------CCCCcccccccccc
Q 025079 171 KMVLPNCCHAMCIKCYRNWNT--------------------------KSESCPFCRGSMKR 205 (258)
Q Consensus 171 ~~vl~~C~H~FC~~Ci~~w~~--------------------------~~~~CP~CR~~l~~ 205 (258)
..+.-+|||.||..|...|.. +.+.||.|..++..
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek 238 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEK 238 (444)
T ss_pred cceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhc
Confidence 466667999999999877733 23479999888865
No 175
>PRK11827 hypothetical protein; Provisional
Probab=27.09 E-value=11 Score=26.57 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=11.1
Q ss_pred hcCCCCcccccccccc
Q 025079 190 NTKSESCPFCRGSMKR 205 (258)
Q Consensus 190 ~~~~~~CP~CR~~l~~ 205 (258)
+..--.||.|+.++..
T Consensus 5 LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 5 LLEIIACPVCNGKLWY 20 (60)
T ss_pred HHhheECCCCCCcCeE
Confidence 3334479999988863
No 176
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=25.22 E-value=23 Score=33.27 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=35.4
Q ss_pred cCccccccCCCCcceecCCCC-cccHhhHHHH-hcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCH-AMCIKCYRNW-NTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H-~FC~~Ci~~w-~~~~~~CP~CR~~l~ 204 (258)
...|.+|++........+|+| .||..|..+- .++..+||+|..-+.
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 467899998877666677999 7999997543 566778999976554
No 177
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.67 E-value=32 Score=26.47 Aligned_cols=11 Identities=36% Similarity=1.208 Sum_probs=9.8
Q ss_pred cccHhhHHHHh
Q 025079 180 AMCIKCYRNWN 190 (258)
Q Consensus 180 ~FC~~Ci~~w~ 190 (258)
.||..|+..|.
T Consensus 42 gFCRNCLs~Wy 52 (104)
T COG3492 42 GFCRNCLSNWY 52 (104)
T ss_pred HHHHHHHHHHH
Confidence 49999999994
No 178
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=24.64 E-value=49 Score=22.30 Aligned_cols=9 Identities=33% Similarity=1.486 Sum_probs=6.4
Q ss_pred cCCCCcccc
Q 025079 191 TKSESCPFC 199 (258)
Q Consensus 191 ~~~~~CP~C 199 (258)
.+...||.|
T Consensus 47 ~~~~~CP~C 55 (55)
T PF14311_consen 47 RRGKGCPYC 55 (55)
T ss_pred cCCCCCCCC
Confidence 455688887
No 179
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.08 E-value=47 Score=24.47 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=20.0
Q ss_pred CCCcccHhhHHHHhcCCCCccccccccc
Q 025079 177 CCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 177 C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
=.|+||..|.+.-+ ...||.|-..+.
T Consensus 27 fEcTFCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 27 FECTFCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred EeeehhHhHHHHhh--cCcCCCCCchhh
Confidence 35889999997644 358999987775
No 180
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=23.35 E-value=38 Score=32.76 Aligned_cols=32 Identities=25% Similarity=0.744 Sum_probs=22.4
Q ss_pred CcCccccccCCCCc--ceecCCCCcccHhhHHHH
Q 025079 158 REDECGICLEPCTK--MVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 158 ~~~~C~ICle~~~~--~vl~~C~H~FC~~Ci~~w 189 (258)
+..+|+||+-.... -...-|.-..|..|+.+.
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecc
Confidence 34799999864432 223348889999999776
No 181
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.33 E-value=40 Score=27.65 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=16.8
Q ss_pred ccccccCCCCcceecCCCCcccHh
Q 025079 161 ECGICLEPCTKMVLPNCCHAMCIK 184 (258)
Q Consensus 161 ~C~ICle~~~~~vl~~C~H~FC~~ 184 (258)
.=-||.+.-...+.-.|||+||..
T Consensus 59 hlfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 59 HLFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred cEEEEecccccEEEEeccccccCh
Confidence 344777766666666799999863
No 182
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.83 E-value=33 Score=21.28 Aligned_cols=13 Identities=38% Similarity=1.055 Sum_probs=9.1
Q ss_pred CCCcccccccccc
Q 025079 193 SESCPFCRGSMKR 205 (258)
Q Consensus 193 ~~~CP~CR~~l~~ 205 (258)
...||.|...+.+
T Consensus 26 ~~~CP~Cg~~~~r 38 (41)
T smart00834 26 LATCPECGGDVRR 38 (41)
T ss_pred CCCCCCCCCccee
Confidence 3479999876554
No 183
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.80 E-value=34 Score=28.78 Aligned_cols=25 Identities=32% Similarity=0.650 Sum_probs=19.2
Q ss_pred CCCcccHhhHHHHhcCCCCccccccccc
Q 025079 177 CCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 177 C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
=.+.||.+|-.+-.. +||-|..++.
T Consensus 26 ~~~~fC~kCG~~tI~---~Cp~C~~~Ir 50 (158)
T PF10083_consen 26 LREKFCSKCGAKTIT---SCPNCSTPIR 50 (158)
T ss_pred HHHHHHHHhhHHHHH---HCcCCCCCCC
Confidence 356799999876443 7999998886
No 184
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=20.91 E-value=27 Score=20.06 Aligned_cols=7 Identities=43% Similarity=1.184 Sum_probs=3.4
Q ss_pred CCccccc
Q 025079 194 ESCPFCR 200 (258)
Q Consensus 194 ~~CP~CR 200 (258)
+-||.|-
T Consensus 17 ~fC~~CG 23 (26)
T PF13248_consen 17 KFCPNCG 23 (26)
T ss_pred ccChhhC
Confidence 3455553
No 185
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=20.53 E-value=21 Score=23.34 Aligned_cols=39 Identities=21% Similarity=0.459 Sum_probs=23.8
Q ss_pred cccccCCCCc---ceecCCCCcccHhhHHHHhc------CCCCccccc
Q 025079 162 CGICLEPCTK---MVLPNCCHAMCIKCYRNWNT------KSESCPFCR 200 (258)
Q Consensus 162 C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~------~~~~CP~CR 200 (258)
|.||...... ..--.|+..||..|+..-.. ..-.||.|+
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 7788773332 22245888999999854321 123788875
No 186
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.31 E-value=32 Score=27.41 Aligned_cols=16 Identities=13% Similarity=0.519 Sum_probs=13.2
Q ss_pred hcCCCCcccccccccc
Q 025079 190 NTKSESCPFCRGSMKR 205 (258)
Q Consensus 190 ~~~~~~CP~CR~~l~~ 205 (258)
+.+...|+.|+++++.
T Consensus 82 LGr~D~CM~C~~pLTL 97 (114)
T PF11023_consen 82 LGRVDACMHCKEPLTL 97 (114)
T ss_pred hchhhccCcCCCcCcc
Confidence 5666799999999973
Done!