Query 025079
Match_columns 258
No_of_seqs 340 out of 2282
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.3 6.9E-13 2.4E-17 94.2 5.1 52 155-206 10-64 (69)
2 3ng2_A RNF4, snurf, ring finge 99.3 2.1E-13 7.2E-18 97.1 2.3 49 157-205 8-63 (71)
3 2csy_A Zinc finger protein 183 99.3 6.6E-13 2.3E-17 97.4 4.4 50 155-204 11-60 (81)
4 2djb_A Polycomb group ring fin 99.3 8.7E-13 3E-17 94.7 5.0 51 155-205 11-62 (72)
5 1iym_A EL5; ring-H2 finger, ub 99.3 7E-13 2.4E-17 89.9 4.1 48 157-204 3-54 (55)
6 2d8t_A Dactylidin, ring finger 99.3 7.5E-13 2.6E-17 94.8 4.2 48 157-204 13-60 (71)
7 2ea6_A Ring finger protein 4; 99.3 4.8E-13 1.6E-17 94.4 2.8 50 155-204 11-67 (69)
8 4ayc_A E3 ubiquitin-protein li 99.3 6.4E-13 2.2E-17 107.3 3.4 48 158-205 52-99 (138)
9 2yur_A Retinoblastoma-binding 99.3 1.2E-12 4.1E-17 94.6 4.3 50 155-204 11-63 (74)
10 2ysl_A Tripartite motif-contai 99.3 2.9E-12 9.9E-17 91.7 6.3 51 155-205 16-69 (73)
11 2ecn_A Ring finger protein 141 99.3 1.2E-12 4.2E-17 93.1 4.0 49 156-205 12-60 (70)
12 1t1h_A Gspef-atpub14, armadill 99.3 1.3E-12 4.4E-17 94.9 4.1 50 155-204 4-54 (78)
13 2ecy_A TNF receptor-associated 99.3 1.7E-12 5.8E-17 91.5 4.2 50 155-204 11-61 (66)
14 2ecm_A Ring finger and CHY zin 99.3 1.3E-12 4.3E-17 88.5 3.3 47 158-204 4-54 (55)
15 2ect_A Ring finger protein 126 99.3 2.9E-12 9.9E-17 93.0 5.2 51 155-205 11-64 (78)
16 2egp_A Tripartite motif-contai 99.3 1.8E-12 6.1E-17 94.1 3.9 51 155-205 8-65 (79)
17 2ecw_A Tripartite motif-contai 99.3 6.3E-12 2.1E-16 91.9 6.8 50 155-204 15-70 (85)
18 2xeu_A Ring finger protein 4; 99.3 5.4E-13 1.8E-17 92.8 0.9 48 158-205 2-56 (64)
19 1chc_A Equine herpes virus-1 r 99.3 2.2E-12 7.5E-17 91.2 3.9 48 158-205 4-52 (68)
20 2ct2_A Tripartite motif protei 99.3 5.9E-12 2E-16 93.0 6.4 52 154-205 10-68 (88)
21 2ecv_A Tripartite motif-contai 99.3 6.2E-12 2.1E-16 92.0 6.3 51 155-205 15-71 (85)
22 2ecl_A Ring-box protein 2; RNF 99.3 2.8E-12 9.7E-17 94.5 4.3 48 158-205 14-76 (81)
23 2ep4_A Ring finger protein 24; 99.3 2.4E-12 8.1E-17 92.6 3.7 51 155-205 11-64 (74)
24 1x4j_A Ring finger protein 38; 99.2 1.4E-12 4.8E-17 94.2 1.9 48 157-204 21-71 (75)
25 2l0b_A E3 ubiquitin-protein li 99.2 2.6E-12 9E-17 96.6 3.5 48 157-204 38-88 (91)
26 3ztg_A E3 ubiquitin-protein li 99.2 3.9E-12 1.3E-16 95.2 3.7 50 155-204 9-61 (92)
27 1v87_A Deltex protein 2; ring- 99.2 5.6E-12 1.9E-16 98.0 4.4 48 158-205 24-94 (114)
28 3lrq_A E3 ubiquitin-protein li 99.2 2.3E-12 8E-17 98.5 2.2 48 157-204 20-69 (100)
29 2ysj_A Tripartite motif-contai 99.2 1.3E-11 4.3E-16 86.1 5.2 45 155-199 16-63 (63)
30 2ecj_A Tripartite motif-contai 99.2 1.5E-11 5.2E-16 83.9 5.3 45 155-199 11-58 (58)
31 2ckl_A Polycomb group ring fin 99.2 3.2E-12 1.1E-16 98.7 1.6 50 156-205 12-62 (108)
32 2y43_A E3 ubiquitin-protein li 99.2 8.6E-12 2.9E-16 94.8 3.6 49 157-205 20-69 (99)
33 3fl2_A E3 ubiquitin-protein li 99.2 8.3E-12 2.9E-16 98.7 3.2 48 157-204 50-98 (124)
34 2kr4_A Ubiquitin conjugation f 99.2 1.5E-11 5.1E-16 91.6 4.4 50 155-204 10-59 (85)
35 2kre_A Ubiquitin conjugation f 99.1 3E-11 1E-15 92.8 4.9 50 155-204 25-74 (100)
36 1wgm_A Ubiquitin conjugation f 99.1 4.4E-11 1.5E-15 91.5 5.8 50 155-204 18-68 (98)
37 1g25_A CDK-activating kinase a 99.1 1.3E-11 4.4E-16 86.7 2.5 47 159-205 3-55 (65)
38 3dpl_R Ring-box protein 1; ubi 99.1 2.7E-11 9.4E-16 94.1 4.4 46 159-204 37-100 (106)
39 4ap4_A E3 ubiquitin ligase RNF 99.1 1.4E-11 4.9E-16 97.1 2.5 49 157-205 5-60 (133)
40 1e4u_A Transcriptional repress 99.1 1.1E-10 3.6E-15 85.8 6.6 50 156-205 8-62 (78)
41 1jm7_A BRCA1, breast cancer ty 99.1 3E-11 1E-15 93.2 3.7 47 159-205 21-70 (112)
42 3l11_A E3 ubiquitin-protein li 99.1 1.2E-11 4E-16 96.5 1.2 49 157-205 13-62 (115)
43 1bor_A Transcription factor PM 99.1 3.1E-11 1.1E-15 82.8 3.0 46 157-205 4-49 (56)
44 3hct_A TNF receptor-associated 99.1 2.2E-11 7.6E-16 95.6 2.5 51 155-205 14-65 (118)
45 1z6u_A NP95-like ring finger p 99.1 3.4E-11 1.2E-15 98.9 3.2 49 157-205 76-125 (150)
46 2ckl_B Ubiquitin ligase protei 99.1 2.9E-11 9.8E-16 100.1 1.8 49 156-204 51-101 (165)
47 2vje_A E3 ubiquitin-protein li 99.0 5.2E-11 1.8E-15 84.0 2.0 48 158-205 7-57 (64)
48 1rmd_A RAG1; V(D)J recombinati 99.0 6.2E-11 2.1E-15 92.5 2.6 49 157-205 21-70 (116)
49 3knv_A TNF receptor-associated 99.0 5.5E-11 1.9E-15 96.7 2.1 50 155-204 27-77 (141)
50 2c2l_A CHIP, carboxy terminus 99.0 1.2E-10 4.3E-15 102.5 4.5 50 155-204 204-254 (281)
51 2vje_B MDM4 protein; proto-onc 99.0 5.7E-11 1.9E-15 83.6 1.8 49 157-205 5-56 (63)
52 1jm7_B BARD1, BRCA1-associated 99.0 1.4E-10 4.6E-15 90.9 2.8 45 158-204 21-66 (117)
53 4ic3_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 84.3 1.8 44 158-205 23-67 (74)
54 4ap4_A E3 ubiquitin ligase RNF 99.0 9.2E-11 3.1E-15 92.4 1.2 49 157-205 70-125 (133)
55 4a0k_B E3 ubiquitin-protein li 99.0 9.1E-11 3.1E-15 92.7 0.5 46 159-204 48-111 (117)
56 2y1n_A E3 ubiquitin-protein li 99.0 2.8E-10 9.5E-15 106.5 3.8 47 159-205 332-379 (389)
57 3hcs_A TNF receptor-associated 98.9 4.9E-10 1.7E-14 93.0 2.5 51 155-205 14-65 (170)
58 2yu4_A E3 SUMO-protein ligase 98.8 7.4E-10 2.5E-14 83.7 2.1 48 157-204 5-62 (94)
59 2d8s_A Cellular modulator of i 98.8 1.4E-09 4.8E-14 80.2 3.3 48 157-204 13-69 (80)
60 2ea5_A Cell growth regulator w 98.8 2.5E-09 8.6E-14 76.3 4.3 45 157-205 13-58 (68)
61 2ecg_A Baculoviral IAP repeat- 98.8 1.7E-09 5.9E-14 78.2 3.4 43 159-205 25-68 (75)
62 2f42_A STIP1 homology and U-bo 98.8 1.6E-09 5.4E-14 91.6 3.4 50 155-204 102-152 (179)
63 2yho_A E3 ubiquitin-protein li 98.7 2.6E-09 9E-14 78.4 1.9 43 159-205 18-61 (79)
64 2ct0_A Non-SMC element 1 homol 98.7 1.5E-08 5.1E-13 73.7 5.2 48 157-204 13-63 (74)
65 3htk_C E3 SUMO-protein ligase 98.6 3.1E-08 1.1E-12 88.1 4.3 49 156-204 178-231 (267)
66 3t6p_A Baculoviral IAP repeat- 98.6 1.4E-08 4.7E-13 93.9 1.8 45 157-205 293-338 (345)
67 2bay_A PRE-mRNA splicing facto 98.5 4.2E-08 1.4E-12 68.5 1.7 45 160-204 4-49 (61)
68 1wim_A KIAA0161 protein; ring 98.4 9E-08 3.1E-12 71.8 2.3 45 158-202 4-61 (94)
69 3k1l_B Fancl; UBC, ring, RWD, 98.4 5.8E-08 2E-12 89.3 1.3 48 157-204 306-372 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.3 3.4E-07 1.2E-11 63.7 2.9 48 157-204 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.0 2.2E-06 7.6E-11 65.3 3.2 47 161-207 3-51 (101)
72 3nw0_A Non-structural maintena 97.2 0.00024 8.3E-09 62.2 4.2 47 158-204 179-228 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0074 2.5E-07 45.0 2.8 31 159-189 3-36 (101)
74 2ko5_A Ring finger protein Z; 93.5 0.071 2.4E-06 40.0 3.9 48 155-204 24-72 (99)
75 2lri_C Autoimmune regulator; Z 91.0 0.2 6.9E-06 34.9 3.6 46 157-202 10-59 (66)
76 1weo_A Cellulose synthase, cat 89.9 0.52 1.8E-05 34.9 5.1 49 158-206 15-71 (93)
77 3u5n_A E3 ubiquitin-protein li 88.9 0.25 8.5E-06 41.7 3.1 47 157-203 5-55 (207)
78 3m62_A Ubiquitin conjugation f 88.6 0.32 1.1E-05 50.2 4.2 50 155-204 887-937 (968)
79 2l5u_A Chromodomain-helicase-D 88.3 0.51 1.7E-05 32.1 3.9 47 155-201 7-57 (61)
80 3o36_A Transcription intermedi 84.6 0.89 3E-05 37.4 4.2 46 158-203 3-52 (184)
81 1mm2_A MI2-beta; PHD, zinc fin 84.6 0.46 1.6E-05 32.3 2.0 46 157-202 7-56 (61)
82 2yql_A PHD finger protein 21A; 82.4 0.36 1.2E-05 32.2 0.7 46 156-201 6-55 (56)
83 1xwh_A Autoimmune regulator; P 76.9 0.75 2.6E-05 31.7 1.0 45 157-201 6-54 (66)
84 2lbm_A Transcriptional regulat 75.2 3.7 0.00013 32.8 4.7 46 156-201 60-116 (142)
85 1fp0_A KAP-1 corepressor; PHD 75.2 2.8 9.7E-05 30.8 3.7 48 155-202 21-72 (88)
86 2puy_A PHD finger protein 21A; 73.8 1 3.5E-05 30.3 0.9 47 158-204 4-54 (60)
87 3ql9_A Transcriptional regulat 73.6 3.8 0.00013 32.2 4.4 45 157-201 55-110 (129)
88 2cs3_A Protein C14ORF4, MY039 73.3 1.6 5.6E-05 31.7 2.0 35 157-191 13-51 (93)
89 1z60_A TFIIH basal transcripti 72.4 2.7 9.2E-05 28.6 2.8 40 160-199 16-58 (59)
90 2ro1_A Transcription intermedi 72.3 5.1 0.00017 33.2 5.1 45 159-203 2-50 (189)
91 1wil_A KIAA1045 protein; ring 71.5 5 0.00017 29.4 4.2 33 156-189 12-47 (89)
92 2jmo_A Parkin; IBR, E3 ligase, 71.3 0.68 2.3E-05 33.2 -0.4 20 176-197 55-74 (80)
93 2l43_A N-teminal domain from h 69.9 2.6 9E-05 30.7 2.5 48 156-203 22-76 (88)
94 2k16_A Transcription initiatio 65.3 2.6 8.8E-05 29.4 1.6 48 157-204 16-70 (75)
95 1zbd_B Rabphilin-3A; G protein 63.3 0.6 2.1E-05 37.0 -2.3 62 157-218 53-123 (134)
96 1wd2_A Ariadne-1 protein homol 63.3 1.9 6.4E-05 29.3 0.5 34 160-193 7-48 (60)
97 2ysm_A Myeloid/lymphoid or mix 62.1 3.8 0.00013 30.7 2.1 44 157-200 5-55 (111)
98 2fiy_A Protein FDHE homolog; F 60.6 1.2 3.9E-05 40.2 -1.3 46 157-202 180-231 (309)
99 1y02_A CARP2, FYVE-ring finger 59.9 1.8 6.3E-05 33.6 -0.0 45 159-203 19-67 (120)
100 1f62_A Transcription factor WS 57.3 7 0.00024 25.0 2.5 41 161-201 2-49 (51)
101 2e6r_A Jumonji/ARID domain-con 56.2 3.2 0.00011 30.5 0.7 48 155-202 12-66 (92)
102 2yt5_A Metal-response element- 56.1 3.3 0.00011 28.1 0.7 46 157-202 4-61 (66)
103 2a20_A Regulating synaptic mem 55.2 2.1 7.2E-05 29.2 -0.4 45 157-201 7-59 (62)
104 2pv0_B DNA (cytosine-5)-methyl 54.1 11 0.00038 34.8 4.2 46 156-201 90-147 (386)
105 2ku3_A Bromodomain-containing 53.1 5.8 0.0002 27.7 1.7 46 157-202 14-66 (71)
106 2zet_C Melanophilin; complex, 52.6 5.1 0.00017 32.3 1.4 44 158-202 67-117 (153)
107 3a1b_A DNA (cytosine-5)-methyl 51.3 9.8 0.00034 30.9 2.9 44 157-200 77-132 (159)
108 1z2q_A LM5-1; membrane protein 51.2 8.6 0.00029 27.5 2.4 32 158-189 20-55 (84)
109 1joc_A EEA1, early endosomal a 51.0 6.7 0.00023 30.4 1.8 29 160-188 70-102 (125)
110 2yw8_A RUN and FYVE domain-con 49.8 8.2 0.00028 27.4 2.0 31 159-189 19-53 (82)
111 3t7l_A Zinc finger FYVE domain 48.8 7.9 0.00027 28.1 1.8 46 159-204 20-75 (90)
112 1x4u_A Zinc finger, FYVE domai 48.6 10 0.00035 27.0 2.4 31 158-188 13-47 (84)
113 1wev_A Riken cDNA 1110020M19; 46.9 2.8 9.6E-05 30.5 -0.9 47 158-204 15-74 (88)
114 2gmg_A Hypothetical protein PF 44.6 7.4 0.00025 29.5 1.1 26 172-202 68-93 (105)
115 1wen_A Inhibitor of growth fam 43.8 20 0.00069 24.8 3.3 46 157-203 14-66 (71)
116 1vfy_A Phosphatidylinositol-3- 43.6 12 0.0004 26.0 2.0 29 160-188 12-44 (73)
117 3zyq_A Hepatocyte growth facto 42.7 9.2 0.00032 32.4 1.6 31 159-189 164-198 (226)
118 1dvp_A HRS, hepatocyte growth 42.5 9.1 0.00031 32.1 1.5 30 159-188 161-194 (220)
119 1we9_A PHD finger family prote 42.0 9.2 0.00031 25.6 1.2 46 157-202 4-58 (64)
120 4gne_A Histone-lysine N-methyl 41.9 20 0.00069 27.0 3.2 47 156-204 12-64 (107)
121 1wfk_A Zinc finger, FYVE domai 41.7 14 0.00048 26.7 2.2 47 158-204 8-65 (88)
122 2ct7_A Ring finger protein 31; 41.7 2.9 9.8E-05 30.2 -1.5 30 172-201 44-75 (86)
123 3i2d_A E3 SUMO-protein ligase 41.2 16 0.00056 33.5 3.1 46 159-204 249-299 (371)
124 4fo9_A E3 SUMO-protein ligase 40.7 17 0.00059 33.3 3.1 46 159-204 215-265 (360)
125 2o35_A Hypothetical protein DU 40.5 9.3 0.00032 28.7 1.1 12 180-191 42-53 (105)
126 3fyb_A Protein of unknown func 40.4 9.4 0.00032 28.7 1.1 12 180-191 41-52 (104)
127 2lv9_A Histone-lysine N-methyl 39.8 16 0.00055 26.8 2.4 40 160-200 29-74 (98)
128 1weu_A Inhibitor of growth fam 37.1 26 0.00089 25.6 3.1 46 157-203 34-86 (91)
129 3mpx_A FYVE, rhogef and PH dom 36.4 7.4 0.00025 35.6 0.0 31 159-189 375-409 (434)
130 3v43_A Histone acetyltransfera 35.4 15 0.0005 27.6 1.5 41 161-201 63-111 (112)
131 2d8v_A Zinc finger FYVE domain 32.7 21 0.00072 24.8 1.8 33 157-190 6-39 (67)
132 3ask_A E3 ubiquitin-protein li 32.2 17 0.00057 31.2 1.5 42 160-201 175-224 (226)
133 2vnf_A ING 4, P29ING4, inhibit 29.6 12 0.00042 25.0 0.2 43 158-201 9-58 (60)
134 1x62_A C-terminal LIM domain p 25.6 33 0.0011 23.4 1.9 39 158-204 14-52 (79)
135 2csz_A Synaptotagmin-like prot 24.8 57 0.0019 23.1 3.0 31 156-186 22-57 (76)
136 2e6s_A E3 ubiquitin-protein li 24.8 25 0.00085 24.7 1.1 41 160-200 27-75 (77)
137 2kwj_A Zinc finger protein DPF 24.5 35 0.0012 25.5 2.0 29 160-188 2-40 (114)
138 1wyh_A SLIM 2, skeletal muscle 24.3 47 0.0016 21.9 2.5 37 160-204 6-44 (72)
139 1wig_A KIAA1808 protein; LIM d 24.2 38 0.0013 22.8 2.0 37 160-204 6-42 (73)
140 2cor_A Pinch protein; LIM doma 23.6 63 0.0022 22.0 3.1 38 159-204 15-52 (79)
141 1m3v_A FLIN4, fusion of the LI 23.5 39 0.0013 25.2 2.1 45 160-204 33-80 (122)
142 3c6w_A P28ING5, inhibitor of g 22.8 20 0.00068 23.9 0.2 43 158-201 8-57 (59)
143 1wew_A DNA-binding family prot 22.3 43 0.0015 23.3 2.0 45 157-202 14-72 (78)
144 2dar_A PDZ and LIM domain prot 21.5 35 0.0012 23.9 1.4 38 159-204 25-62 (90)
145 1x64_A Alpha-actinin-2 associa 21.4 46 0.0016 23.2 2.0 40 157-204 23-62 (89)
146 1x6a_A LIMK-2, LIM domain kina 20.9 40 0.0014 22.9 1.6 37 160-204 16-52 (81)
147 3asl_A E3 ubiquitin-protein li 20.8 26 0.00088 24.1 0.5 41 161-201 20-68 (70)
148 2d8x_A Protein pinch; LIM doma 20.1 34 0.0012 22.6 1.0 37 160-204 6-42 (70)
149 2d8z_A Four and A half LIM dom 20.1 42 0.0014 22.0 1.5 37 160-204 6-42 (70)
150 3shb_A E3 ubiquitin-protein li 20.1 33 0.0011 24.1 1.0 41 161-201 28-76 (77)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=6.9e-13 Score=94.16 Aligned_cols=52 Identities=25% Similarity=0.650 Sum_probs=43.5
Q ss_pred CCCCcCccccccCCCC---cceecCCCCcccHhhHHHHhcCCCCccccccccccc
Q 025079 155 DLEREDECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 206 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~---~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~~ 206 (258)
+.+.+.+|+||++.+. .++.++|||.||..|+.+|+..+.+||+||..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3355678999998774 456678999999999999998889999999998743
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=2.1e-13 Score=97.09 Aligned_cols=49 Identities=27% Similarity=0.773 Sum_probs=43.6
Q ss_pred CCcCccccccCCCCcc-------eecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~-------vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+++.+|+||++.+..+ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567999999988775 788899999999999999888999999998863
No 3
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.6e-13 Score=97.38 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=45.2
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+.+....|+||++.+..+++++|||.||..|+.+|+.....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34556899999999999999999999999999999988889999999875
No 4
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.7e-13 Score=94.71 Aligned_cols=51 Identities=24% Similarity=0.459 Sum_probs=44.9
Q ss_pred CCCCcCccccccCCCCcceec-CCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~-~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+.+.+..|+||++.+.+++.. +|||.||..|+.+|+..+..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 345668999999999988775 899999999999999888899999998864
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.33 E-value=7e-13 Score=89.93 Aligned_cols=48 Identities=25% Similarity=0.689 Sum_probs=40.8
Q ss_pred CCcCccccccCCCCc---ceec-CCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTK---MVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~---~vl~-~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+++.+|+||++.+.. ++.. +|||.||..|+.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 445789999998876 4544 59999999999999999999999998763
No 6
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.5e-13 Score=94.79 Aligned_cols=48 Identities=29% Similarity=0.708 Sum_probs=44.3
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..+.+|+||++.+.+++.++|||.||..|+.+|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 456799999999999988899999999999999988899999999886
No 7
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.8e-13 Score=94.45 Aligned_cols=50 Identities=26% Similarity=0.736 Sum_probs=43.7
Q ss_pred CCCCcCccccccCCCCcc-------eecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~-------vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
....+.+|+||++.+..+ +.++|||.||..|+.+|+..+..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345568999999988765 78889999999999999988889999999875
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.31 E-value=6.4e-13 Score=107.30 Aligned_cols=48 Identities=35% Similarity=0.827 Sum_probs=44.2
Q ss_pred CcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 158 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
.+..|+||++.+.+++.++|||.||..|+..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 356899999999999999999999999999999999999999998863
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=94.63 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=43.7
Q ss_pred CCCCcCccccccCCCCcceecC-CCCcccHhhHHHHhcCC--CCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPN-CCHAMCIKCYRNWNTKS--ESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~-C~H~FC~~Ci~~w~~~~--~~CP~CR~~l~ 204 (258)
+...+..|+||++.+.+++.++ |||.||..||.+|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4466789999999999999998 99999999999998654 69999999754
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.9e-12 Score=91.69 Aligned_cols=51 Identities=33% Similarity=0.751 Sum_probs=44.4
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhc---CCCCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT---KSESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~---~~~~CP~CR~~l~~ 205 (258)
....+..|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4456789999999999999889999999999999986 45599999998863
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=93.13 Aligned_cols=49 Identities=35% Similarity=0.965 Sum_probs=43.7
Q ss_pred CCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
...+.+|+||++.+.. +.++|||.||..|+.+|+.....||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3456799999999988 777899999999999999999999999998873
No 12
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=1.3e-12 Score=94.95 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=45.0
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcC-CCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~-~~~CP~CR~~l~ 204 (258)
+..++..|+||++.+.+++.++|||+||..||.+|+.. +..||.||.++.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34567899999999999999999999999999999876 779999999875
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=91.54 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=43.8
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHh-cCCCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~-~~~~~CP~CR~~l~ 204 (258)
...++..|+||++.+.+++.++|||.||..|+.+|+ .....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 345568999999999999889999999999999998 45669999999875
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.29 E-value=1.3e-12 Score=88.53 Aligned_cols=47 Identities=28% Similarity=0.658 Sum_probs=41.1
Q ss_pred CcCccccccCCCCc----ceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 158 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.+.+|+||++.+.. ++.++|+|.||..|+.+|+..+..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999998854 777889999999999999988899999998763
No 15
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.28 E-value=2.9e-12 Score=93.04 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=42.9
Q ss_pred CCCCcCccccccCCCCcc---eecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~---vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
....+.+|+||++.+..+ ..++|+|.||..|+.+|+..+..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 345568999999988643 445799999999999999988999999998863
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=94.06 Aligned_cols=51 Identities=33% Similarity=0.665 Sum_probs=44.6
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcC-------CCCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-------SESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~-------~~~CP~CR~~l~~ 205 (258)
..+++.+|+||++.+.+++.++|||.||..|+.+|... ...||.||.++..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34567899999999999988999999999999999776 5699999998863
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=6.3e-12 Score=91.92 Aligned_cols=50 Identities=30% Similarity=0.637 Sum_probs=44.2
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcC------CCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK------SESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~------~~~CP~CR~~l~ 204 (258)
+...+..|+||++.+..++.++|||.||..|+..|... ...||.||.++.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34567899999999999999999999999999999765 669999999886
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.27 E-value=5.4e-13 Score=92.81 Aligned_cols=48 Identities=27% Similarity=0.777 Sum_probs=42.1
Q ss_pred CcCccccccCCCCcc-------eecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 158 REDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 158 ~~~~C~ICle~~~~~-------vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
++.+|+||++.+..+ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 356899999988765 778899999999999999888999999998863
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.27 E-value=2.2e-12 Score=91.17 Aligned_cols=48 Identities=29% Similarity=0.827 Sum_probs=42.7
Q ss_pred CcCccccccCCCCcc-eecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 158 REDECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 158 ~~~~C~ICle~~~~~-vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
.+.+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 356899999999874 778899999999999999888999999998863
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.9e-12 Score=93.03 Aligned_cols=52 Identities=33% Similarity=0.699 Sum_probs=44.6
Q ss_pred CCCCCcCccccccCCCCc----ceecCCCCcccHhhHHHHhcCC---CCcccccccccc
Q 025079 154 ADLEREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGSMKR 205 (258)
Q Consensus 154 ~~~~~~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~~~~---~~CP~CR~~l~~ 205 (258)
....++.+|+||++.+.. ++.++|||.||..|+.+|+..+ ..||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345667899999999987 8888999999999999997765 699999998753
No 21
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=6.2e-12 Score=91.95 Aligned_cols=51 Identities=35% Similarity=0.732 Sum_probs=44.7
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcC------CCCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK------SESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~------~~~CP~CR~~l~~ 205 (258)
+...+.+|+||++.+.+++.++|||.||..|+..|+.. ...||.||..+..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 44567899999999999888899999999999999765 6799999998863
No 22
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.8e-12 Score=94.52 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=40.4
Q ss_pred CcCccccccCCCCc---------------ceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 158 REDECGICLEPCTK---------------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 158 ~~~~C~ICle~~~~---------------~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
++..|+||++.+.. .++++|+|.||..||.+|+..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34679999988754 3556799999999999999999999999998753
No 23
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=92.60 Aligned_cols=51 Identities=27% Similarity=0.654 Sum_probs=42.1
Q ss_pred CCCCcCccccccCCCCcc---eecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~---vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+...+.+|+||++.+..+ ...+|+|.||..|+.+|+..+..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345567999999988643 333799999999999999888899999998864
No 24
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.4e-12 Score=94.24 Aligned_cols=48 Identities=23% Similarity=0.648 Sum_probs=41.6
Q ss_pred CCcCccccccCCCCcc---eecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~---vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+.+.+|+||++.+..+ +.++|+|.||..|+.+|+..+..||+||+++.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4567899999987753 55679999999999999988899999999875
No 25
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.25 E-value=2.6e-12 Score=96.60 Aligned_cols=48 Identities=31% Similarity=0.606 Sum_probs=41.8
Q ss_pred CCcCccccccCCCCc---ceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+.+..|+||++.+.. ++.++|+|.||..|+.+|+..+.+||+||.++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 456799999988765 666679999999999999999999999998875
No 26
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.23 E-value=3.9e-12 Score=95.20 Aligned_cols=50 Identities=26% Similarity=0.520 Sum_probs=43.4
Q ss_pred CCCCcCccccccCCCCcceecC-CCCcccHhhHHHHhcC--CCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPN-CCHAMCIKCYRNWNTK--SESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~-C~H~FC~~Ci~~w~~~--~~~CP~CR~~l~ 204 (258)
+..++..|+||++.+.+|+.++ |||+||..||.+|+.. ...||.||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4566789999999999999999 9999999999999753 359999998863
No 27
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.22 E-value=5.6e-12 Score=97.95 Aligned_cols=48 Identities=29% Similarity=0.624 Sum_probs=39.9
Q ss_pred CcCccccccCCCCcce------------------ecCCCCcccHhhHHHHh-----cCCCCcccccccccc
Q 025079 158 REDECGICLEPCTKMV------------------LPNCCHAMCIKCYRNWN-----TKSESCPFCRGSMKR 205 (258)
Q Consensus 158 ~~~~C~ICle~~~~~v------------------l~~C~H~FC~~Ci~~w~-----~~~~~CP~CR~~l~~ 205 (258)
.+.+|+||++.+..+. +++|+|.||..||.+|+ ..+.+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3468999999875432 67899999999999998 556799999998864
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=98.52 Aligned_cols=48 Identities=33% Similarity=0.868 Sum_probs=43.3
Q ss_pred CCcCccccccCCCCccee-cCCCCcccHhhHHHHhcCC-CCccccccccc
Q 025079 157 EREDECGICLEPCTKMVL-PNCCHAMCIKCYRNWNTKS-ESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl-~~C~H~FC~~Ci~~w~~~~-~~CP~CR~~l~ 204 (258)
.++..|+||++.+..++. ++|||.||..||.+|+..+ ..||.||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 345789999999999998 9999999999999998877 69999999885
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=86.11 Aligned_cols=45 Identities=36% Similarity=0.771 Sum_probs=39.8
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhc---CCCCcccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT---KSESCPFC 199 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~---~~~~CP~C 199 (258)
..+++..|+||++.+.+++.++|||.||..|+.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4466789999999999999999999999999999986 45689998
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.5e-11 Score=83.91 Aligned_cols=45 Identities=33% Similarity=0.892 Sum_probs=39.1
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHH---hcCCCCcccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNW---NTKSESCPFC 199 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w---~~~~~~CP~C 199 (258)
....+..|+||++.+.+++.++|||.||..|+.+| ......||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34556899999999999999999999999999999 4456799998
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.19 E-value=3.2e-12 Score=98.72 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=44.9
Q ss_pred CCCcCccccccCCCCcceec-CCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 156 LEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~-~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
...+..|+||++.+.+++.+ +|||.||..|+..|+..+..||.||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 35567999999999998886 999999999999999988999999998864
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.18 E-value=8.6e-12 Score=94.76 Aligned_cols=49 Identities=27% Similarity=0.675 Sum_probs=43.6
Q ss_pred CCcCccccccCCCCcceec-CCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~-~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
.++..|+||++.+.+++.. +|||.||..|+.+|...+..||.||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3457899999999998776 899999999999999988999999998863
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.17 E-value=8.3e-12 Score=98.67 Aligned_cols=48 Identities=27% Similarity=0.532 Sum_probs=42.6
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCC-CCccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~-~~CP~CR~~l~ 204 (258)
+.+..|+||++.+.+++.++|||.||..|+..|.... ..||.||.++.
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 4457899999999999999999999999999998654 49999999885
No 34
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.17 E-value=1.5e-11 Score=91.62 Aligned_cols=50 Identities=18% Similarity=-0.016 Sum_probs=45.6
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+...+..|+||++.+.+||+++|||+||..||.+|+....+||+||.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 44567899999999999999999999999999999887889999999885
No 35
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.14 E-value=3e-11 Score=92.83 Aligned_cols=50 Identities=18% Similarity=-0.002 Sum_probs=45.8
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+...+..|+||++.+.+||+++|||+||..||.+|+....+||+||.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 44567899999999999999999999999999999988889999999885
No 36
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.14 E-value=4.4e-11 Score=91.51 Aligned_cols=50 Identities=14% Similarity=-0.004 Sum_probs=45.9
Q ss_pred CCCCcCccccccCCCCcceecCCC-CcccHhhHHHHhcCCCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCC-HAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~-H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+...++.|+||++.+.+||+++|| |+||..||.+|+....+||+||.++.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 446678999999999999999999 99999999999988889999999886
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=1.3e-11 Score=86.69 Aligned_cols=47 Identities=19% Similarity=0.578 Sum_probs=38.4
Q ss_pred cCccccccC-CCCcc----eecCCCCcccHhhHHHHhc-CCCCcccccccccc
Q 025079 159 EDECGICLE-PCTKM----VLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle-~~~~~----vl~~C~H~FC~~Ci~~w~~-~~~~CP~CR~~l~~ 205 (258)
+..|+||++ .+.++ ++++|||.||..|+.+|.. .+..||.||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 468999999 66554 5678999999999999954 45689999998863
No 38
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.13 E-value=2.7e-11 Score=94.09 Aligned_cols=46 Identities=24% Similarity=0.627 Sum_probs=39.9
Q ss_pred cCccccccCCCCcc------------------eecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKM------------------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~------------------vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+..|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 46899999987643 45789999999999999999999999999864
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=1.4e-11 Score=97.06 Aligned_cols=49 Identities=27% Similarity=0.773 Sum_probs=44.0
Q ss_pred CCcCccccccCCCCcc-------eecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~-------vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
.++.+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3457899999998876 888999999999999999999999999999864
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.11 E-value=1.1e-10 Score=85.83 Aligned_cols=50 Identities=26% Similarity=0.651 Sum_probs=39.6
Q ss_pred CCCcCccccccCCCC--cceecC--CCCcccHhhHHHHh-cCCCCcccccccccc
Q 025079 156 LEREDECGICLEPCT--KMVLPN--CCHAMCIKCYRNWN-TKSESCPFCRGSMKR 205 (258)
Q Consensus 156 ~~~~~~C~ICle~~~--~~vl~~--C~H~FC~~Ci~~w~-~~~~~CP~CR~~l~~ 205 (258)
.+++..|+||++.+. ++...+ |||.||..|+.++. .....||.||.++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 456789999999874 344444 99999999998875 445699999999863
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=3e-11 Score=93.17 Aligned_cols=47 Identities=30% Similarity=0.709 Sum_probs=41.6
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHhcCCC---Ccccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE---SCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~---~CP~CR~~l~~ 205 (258)
...|+||++.+..++.++|||.||..|+.+|...+. .||.||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 458999999999999999999999999999987553 89999998863
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.11 E-value=1.2e-11 Score=96.49 Aligned_cols=49 Identities=37% Similarity=0.810 Sum_probs=43.5
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcC-CCCcccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~-~~~CP~CR~~l~~ 205 (258)
.++..|+||++.+.+++.++|||.||..|+.+|+.. ...||.||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 446789999999999999999999999999999876 5699999998863
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=3.1e-11 Score=82.79 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=40.1
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
.++..|+||++.+.+++.++|||.||..|+..| ...||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 456789999999999999999999999999773 5689999998863
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.10 E-value=2.2e-11 Score=95.57 Aligned_cols=51 Identities=27% Similarity=0.525 Sum_probs=44.9
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCC-Ccccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~-~CP~CR~~l~~ 205 (258)
..+.+..|+||++.+..++.++|||.||..|+.+|+..+. .||.||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4466689999999999999999999999999999987665 99999998863
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.09 E-value=3.4e-11 Score=98.86 Aligned_cols=49 Identities=29% Similarity=0.597 Sum_probs=43.6
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCC-Ccccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~-~CP~CR~~l~~ 205 (258)
..+..|+||++.+.+++.++|||.||..|+..|+.... .||.||.++..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 44579999999999999999999999999999987655 89999998863
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.06 E-value=2.9e-11 Score=100.10 Aligned_cols=49 Identities=29% Similarity=0.663 Sum_probs=43.0
Q ss_pred CCCcCccccccCCCCcceec-CCCCcccHhhHHHHhcC-CCCccccccccc
Q 025079 156 LEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTK-SESCPFCRGSMK 204 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~-~C~H~FC~~Ci~~w~~~-~~~CP~CR~~l~ 204 (258)
...+..|+||++.+.+++.+ +|||.||..|+.+|+.. ...||+||.++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 34567999999999998776 89999999999999876 679999999885
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.04 E-value=5.2e-11 Score=83.99 Aligned_cols=48 Identities=21% Similarity=0.590 Sum_probs=42.6
Q ss_pred CcCccccccCCCCcceec--CCCCc-ccHhhHHHHhcCCCCcccccccccc
Q 025079 158 REDECGICLEPCTKMVLP--NCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl~--~C~H~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
++.+|.||++...++++. ||||. ||..|+..|...+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456899999999988876 89999 8999999999888899999998863
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.04 E-value=6.2e-11 Score=92.46 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=43.6
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcC-CCCcccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~-~~~CP~CR~~l~~ 205 (258)
..+..|+||++.+.+++.++|||.||..|+.+|+.. ...||.||.++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 345789999999999999999999999999999876 6799999998863
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.03 E-value=5.5e-11 Score=96.68 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=44.3
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCC-Cccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~-~CP~CR~~l~ 204 (258)
..+.+..|+||++.+.+++.++|||.||..||.+|+.... .||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4466789999999999999999999999999999987654 9999999764
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=1.2e-10 Score=102.50 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=44.0
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCC-CCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~-~~CP~CR~~l~ 204 (258)
+...+..|+||++.+.+||+++|||+||..||.+|+..+ .+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 445678999999999999999999999999999998654 45999999885
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.03 E-value=5.7e-11 Score=83.56 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=42.3
Q ss_pred CCcCccccccCCCCcceec--CCCCc-ccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKMVLP--NCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~--~C~H~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+.+.+|.||++...++++. ||||. ||..|+.+|...+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3456899999998887665 89998 9999999998888899999999863
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=1.4e-10 Score=90.91 Aligned_cols=45 Identities=22% Similarity=0.512 Sum_probs=41.0
Q ss_pred CcCccccccCCCCcceec-CCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 158 REDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl~-~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.+..|+||++.+.+++.+ +|||+||..|+..|.. ..||.||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 357899999999999988 9999999999999987 78999999875
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.97 E-value=1.2e-10 Score=84.30 Aligned_cols=44 Identities=27% Similarity=0.731 Sum_probs=39.7
Q ss_pred CcCccccccCCCCcceecCCCCc-ccHhhHHHHhcCCCCcccccccccc
Q 025079 158 REDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl~~C~H~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34689999999999999899999 999999998 789999998864
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=9.2e-11 Score=92.38 Aligned_cols=49 Identities=27% Similarity=0.773 Sum_probs=43.2
Q ss_pred CCcCccccccCCCCcc-------eecCCCCcccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~-------vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+...+|+||++.+..+ +.++|||.||..|+.+|+..+++||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4567899999987764 778899999999999999999999999998863
No 55
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.95 E-value=9.1e-11 Score=92.74 Aligned_cols=46 Identities=24% Similarity=0.627 Sum_probs=0.4
Q ss_pred cCccccccCCCCcc------------------eecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKM------------------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~------------------vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+..|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 46899999987642 23579999999999999999999999999864
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.95 E-value=2.8e-10 Score=106.54 Aligned_cols=47 Identities=34% Similarity=0.892 Sum_probs=43.2
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHhc-CCCCcccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~-~~~~CP~CR~~l~~ 205 (258)
..+|+||++.+.+++.++|||.||..|+..|.. ....||+||.++..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 479999999999999999999999999999987 67899999999864
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.88 E-value=4.9e-10 Score=92.98 Aligned_cols=51 Identities=27% Similarity=0.533 Sum_probs=44.7
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCC-CCcccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSMKR 205 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~-~~CP~CR~~l~~ 205 (258)
..+++..|+||++.+.+|+.++|||+||..|+.+|+..+ ..||.||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 456678999999999999999999999999999997654 499999998863
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=7.4e-10 Score=83.73 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=40.8
Q ss_pred CCcCccccccCCCCcceecC-CCCcccHhhHHHHhcCC------CCccc--cccc-cc
Q 025079 157 EREDECGICLEPCTKMVLPN-CCHAMCIKCYRNWNTKS------ESCPF--CRGS-MK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~-C~H~FC~~Ci~~w~~~~------~~CP~--CR~~-l~ 204 (258)
..+..|+||++.+.+||.++ |||+||..||.+|+... .+||+ |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 45689999999999999985 99999999999997643 48999 9865 53
No 59
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.4e-09 Score=80.23 Aligned_cols=48 Identities=23% Similarity=0.602 Sum_probs=39.3
Q ss_pred CCcCccccccCCCC--cceecCCC-----CcccHhhHHHHhcCC--CCccccccccc
Q 025079 157 EREDECGICLEPCT--KMVLPNCC-----HAMCIKCYRNWNTKS--ESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~--~~vl~~C~-----H~FC~~Ci~~w~~~~--~~CP~CR~~l~ 204 (258)
+.+..|.||++.+. .+.+.+|+ |.||..||.+|+..+ .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 44578999998764 35667796 999999999998765 49999999885
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.5e-09 Score=76.29 Aligned_cols=45 Identities=29% Similarity=0.770 Sum_probs=39.6
Q ss_pred CCcCccccccCCCCcceecCCCCc-ccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+++..|.||++...++++.||||. ||..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 456789999999999999999999 99999974 4789999998864
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=78.18 Aligned_cols=43 Identities=28% Similarity=0.757 Sum_probs=37.8
Q ss_pred cCccccccCCCCcceecCCCCc-ccHhhHHHHhcCCCCcccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+.+|+||++.+.++++++|||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3579999999999999999999 99999964 3789999998864
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.81 E-value=1.6e-09 Score=91.56 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=44.0
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCC-CCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~-~~CP~CR~~l~ 204 (258)
+...+..|+||++.+.+||+++|||+||..||..|+..+ .+||+||.++.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 446678999999999999999999999999999997653 47999999885
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.73 E-value=2.6e-09 Score=78.35 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=38.5
Q ss_pred cCccccccCCCCcceecCCCCc-ccHhhHHHHhcCCCCcccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+..|.||++...++++.||||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 3589999999999999999999 999999876 399999999874
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=1.5e-08 Score=73.72 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=39.4
Q ss_pred CCcCccccccCCCCc-ceecCCCCcccHhhHHHHhcCC--CCccccccccc
Q 025079 157 EREDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKS--ESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~-~vl~~C~H~FC~~Ci~~w~~~~--~~CP~CR~~l~ 204 (258)
+...+|+||.+.+.. .....|+|.||..|+.+|+..+ .+||+||.+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 445789999998874 2334799999999999998877 79999998765
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.1e-08 Score=88.09 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=42.1
Q ss_pred CCCcCccccccCCCCccee-cCCCCcccHhhHHHHhcCC--CCccc--cccccc
Q 025079 156 LEREDECGICLEPCTKMVL-PNCCHAMCIKCYRNWNTKS--ESCPF--CRGSMK 204 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl-~~C~H~FC~~Ci~~w~~~~--~~CP~--CR~~l~ 204 (258)
...+..|+||++.+.+||. ..|||+||..||.+|...+ ..||. ||..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3556899999999999997 4899999999999997654 48999 998775
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.56 E-value=1.4e-08 Score=93.94 Aligned_cols=45 Identities=31% Similarity=0.869 Sum_probs=40.5
Q ss_pred CCcCccccccCCCCcceecCCCCc-ccHhhHHHHhcCCCCcccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 205 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 205 (258)
+++..|+||++.+..++.++|||. ||..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 345789999999999999899999 999999988 689999999864
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.46 E-value=4.2e-08 Score=68.55 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=41.9
Q ss_pred CccccccCCCCcceec-CCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 160 DECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~-~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..|+||++.+.+|++. +|||+|+..||.+|+..+.+||+++.++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 6799999999999998 89999999999999887788999999886
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=9e-08 Score=71.82 Aligned_cols=45 Identities=22% Similarity=0.603 Sum_probs=35.2
Q ss_pred CcCccccccCCCCccee---cCCCCcccHhhHHHHhcC--------CCCccc--cccc
Q 025079 158 REDECGICLEPCTKMVL---PNCCHAMCIKCYRNWNTK--------SESCPF--CRGS 202 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl---~~C~H~FC~~Ci~~w~~~--------~~~CP~--CR~~ 202 (258)
...+|+||++.+..+.. .+|||.||..|+.++... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999999876543 379999999999887431 238999 9977
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.39 E-value=5.8e-08 Score=89.31 Aligned_cols=48 Identities=23% Similarity=0.638 Sum_probs=37.7
Q ss_pred CCcCccccccCCCCc-cee-------cCCCCcccHhhHHHHhcCC-----------CCccccccccc
Q 025079 157 EREDECGICLEPCTK-MVL-------PNCCHAMCIKCYRNWNTKS-----------ESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~-~vl-------~~C~H~FC~~Ci~~w~~~~-----------~~CP~CR~~l~ 204 (258)
+...+|+||++.+.. ..+ +.|+|.||..|+.+|+... ..||+||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456899999987664 222 4799999999999997532 37999999886
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.28 E-value=3.4e-07 Score=63.70 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=37.7
Q ss_pred CCcCccccccCCCCcceecCCC--C---cccHhhHHHHhcC--CCCccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCC--H---AMCIKCYRNWNTK--SESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~--H---~FC~~Ci~~w~~~--~~~CP~CR~~l~ 204 (258)
+++..|.||++....+.+.||. | .||..|+.+|+.. +.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999865555567765 4 8999999999753 579999998874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.04 E-value=2.2e-06 Score=65.32 Aligned_cols=47 Identities=23% Similarity=0.547 Sum_probs=38.0
Q ss_pred ccccccCCCCc-ceecCCCCcccHhhHHHHh-cCCCCcccccccccccc
Q 025079 161 ECGICLEPCTK-MVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMKRVN 207 (258)
Q Consensus 161 ~C~ICle~~~~-~vl~~C~H~FC~~Ci~~w~-~~~~~CP~CR~~l~~~~ 207 (258)
.|.+|--++.. ..+.||+|.||.+|+..|. .+.+.||.|+.++.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 58888777764 5556699999999999996 55689999999998653
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.19 E-value=0.00024 Score=62.17 Aligned_cols=47 Identities=19% Similarity=0.468 Sum_probs=37.4
Q ss_pred CcCccccccCCCCc-ceecCCCCcccHhhHHHHhcCC--CCccccccccc
Q 025079 158 REDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNTKS--ESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~~-~vl~~C~H~FC~~Ci~~w~~~~--~~CP~CR~~l~ 204 (258)
.-.+|.||.+.... ...++|+|.||..|+..|...+ ..||.|+.+..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 35789999998775 3346699999999999997654 49999987643
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.49 E-value=0.0074 Score=45.01 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=25.6
Q ss_pred cCccccccCC-CCccee--cCCCCcccHhhHHHH
Q 025079 159 EDECGICLEP-CTKMVL--PNCCHAMCIKCYRNW 189 (258)
Q Consensus 159 ~~~C~ICle~-~~~~vl--~~C~H~FC~~Ci~~w 189 (258)
+..|+||.+. +..++. ..|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4689999975 566665 779999999999983
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.49 E-value=0.071 Score=39.97 Aligned_cols=48 Identities=23% Similarity=0.544 Sum_probs=38.7
Q ss_pred CCCCcCccccccCCCCcceecCC-CCcccHhhHHHHhcCCCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNC-CHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C-~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..-.-..|..|.-.... +..| .|-.|.+|+.-.+..+..||+|..++.
T Consensus 24 s~~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCSCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cccCcccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 34455789999966553 3336 599999999999999999999999986
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.99 E-value=0.2 Score=34.91 Aligned_cols=46 Identities=22% Similarity=0.515 Sum_probs=33.3
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCC----Cccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE----SCPFCRGS 202 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~----~CP~CR~~ 202 (258)
....+|.||.+.-....--.|...||..|+.+.+.... .||.|+..
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 33467999987654444456899999999987755432 89999754
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.94 E-value=0.52 Score=34.90 Aligned_cols=49 Identities=24% Similarity=0.629 Sum_probs=36.5
Q ss_pred CcCccccccCCCCc-------ceecCCCCcccHhhHHH-HhcCCCCccccccccccc
Q 025079 158 REDECGICLEPCTK-------MVLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRV 206 (258)
Q Consensus 158 ~~~~C~ICle~~~~-------~vl~~C~H~FC~~Ci~~-w~~~~~~CP~CR~~l~~~ 206 (258)
....|.||-+..-. ...-.|+-..|..|++. ....++.||.|+...++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 34689999986431 22334777889999954 577889999999999864
No 77
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=88.86 E-value=0.25 Score=41.70 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=33.3
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCC----CCcccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFCRGSM 203 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~----~~CP~CR~~l 203 (258)
..+..|.+|.+.-.-...-.|...||..|+.+-+... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4557799998664434445688899999997654432 3899998654
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.57 E-value=0.32 Score=50.17 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=45.1
Q ss_pred CCCCcCccccccCCCCcceecCCC-CcccHhhHHHHhcCCCCccccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCC-HAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~-H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+..++..|+|-.+.+.+||+++-| +++-..+|.+|+....+||+=|.++.
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 446678999999999999999887 59999999999988889999999886
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.27 E-value=0.51 Score=32.10 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=32.2
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcC----CCCcccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRG 201 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR~ 201 (258)
+...+..|.+|.+.-.-..--.|...||..|+..-+.. .-.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34556789999875433333568889999999764322 237999964
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.59 E-value=0.89 Score=37.41 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=32.9
Q ss_pred CcCccccccCCCCcceecCCCCcccHhhHHHHhcCC----CCcccccccc
Q 025079 158 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFCRGSM 203 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~----~~CP~CR~~l 203 (258)
.+..|.+|.+.-.-...-.|.-.||..|+.+-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 346799998765544445688899999987654432 3799998643
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.55 E-value=0.46 Score=32.31 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=31.4
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcC----CCCccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGS 202 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR~~ 202 (258)
..+..|.||.+.-.-..--.|...||..|+.+-+.. .-.||.|+..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456789999875443334568889999999754332 2279999754
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.37 E-value=0.36 Score=32.19 Aligned_cols=46 Identities=20% Similarity=0.467 Sum_probs=30.7
Q ss_pred CCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCC----CCcccccc
Q 025079 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFCRG 201 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~----~~CP~CR~ 201 (258)
...+..|.+|.+.-.-..--.|...||..|+.+-+... -.||.|+.
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34567899998764434445688899999997543322 26888853
No 83
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=76.93 E-value=0.75 Score=31.68 Aligned_cols=45 Identities=22% Similarity=0.499 Sum_probs=31.1
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcC----CCCcccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRG 201 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR~ 201 (258)
..+..|.||.+.-.-..--.|...||..|+.+-+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 345789999976443444568889999999754332 227999964
No 84
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=75.19 E-value=3.7 Score=32.81 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=33.7
Q ss_pred CCCcCccccccCCCCcceecCCCCcccHhhHHHHhc-----------CCCCcccccc
Q 025079 156 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT-----------KSESCPFCRG 201 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~-----------~~~~CP~CR~ 201 (258)
...+..|.+|.+.-.-..--.|...||..|+.+-+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345678999998766555557999999999986432 2238999973
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.16 E-value=2.8 Score=30.77 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=32.9
Q ss_pred CCCCcCccccccCCCCcceecCCCCcccHhhHHHHhcCC----CCccccccc
Q 025079 155 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFCRGS 202 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~----~~CP~CR~~ 202 (258)
....+..|.+|.+.-.-..--.|.-.||..|+.+=+... -.||.|+..
T Consensus 21 ~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345567899999764433345677789999997654332 279999754
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=73.84 E-value=1 Score=30.32 Aligned_cols=47 Identities=21% Similarity=0.497 Sum_probs=32.2
Q ss_pred CcCccccccCCCCcceecCCCCcccHhhHHHHhcC----CCCccccccccc
Q 025079 158 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR~~l~ 204 (258)
.+..|.+|...-.-..--.|...||..|+.+-+.. .-.||.|+....
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45689999876443444568889999999754332 227999976543
No 87
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=73.62 E-value=3.8 Score=32.20 Aligned_cols=45 Identities=22% Similarity=0.480 Sum_probs=31.8
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHh-----------cCCCCcccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWN-----------TKSESCPFCRG 201 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~-----------~~~~~CP~CR~ 201 (258)
..+..|.||-+.-.-..--.|-..||..|+.+-+ ...-.|++|+.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4556799999875544445689999999998631 12238999964
No 88
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=73.31 E-value=1.6 Score=31.68 Aligned_cols=35 Identities=26% Similarity=0.529 Sum_probs=26.1
Q ss_pred CCcCccccccCCCCcceecCC----CCcccHhhHHHHhc
Q 025079 157 EREDECGICLEPCTKMVLPNC----CHAMCIKCYRNWNT 191 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C----~H~FC~~Ci~~w~~ 191 (258)
.....|.+|.|..++.-...| .|.||..|-+...+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 445789999998887433334 69999999987643
No 89
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.38 E-value=2.7 Score=28.60 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=29.9
Q ss_pred CccccccCCCCcc---eecCCCCcccHhhHHHHhcCCCCcccc
Q 025079 160 DECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFC 199 (258)
Q Consensus 160 ~~C~ICle~~~~~---vl~~C~H~FC~~Ci~~w~~~~~~CP~C 199 (258)
..|-.|...+... .-+.|++.||.+|=.=..+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3588888776542 357899999999976555666789988
No 90
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=72.32 E-value=5.1 Score=33.17 Aligned_cols=45 Identities=18% Similarity=0.415 Sum_probs=31.2
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHhcC----CCCcccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGSM 203 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR~~l 203 (258)
+..|.+|.+.-.-...-.|...||..|+.+=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3579999876544444568889999999754332 23799998653
No 91
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=71.45 E-value=5 Score=29.35 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCCcCccccccCCCCc---ceecCCCCcccHhhHHHH
Q 025079 156 LEREDECGICLEPCTK---MVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w 189 (258)
...+..|.||-.--.. +-.. |+-.||..|+++-
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceecccc-ccccccHhhcccc
Confidence 3466789999732222 3333 7899999999885
No 92
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=71.32 E-value=0.68 Score=33.19 Aligned_cols=20 Identities=25% Similarity=0.835 Sum_probs=17.1
Q ss_pred CCCCcccHhhHHHHhcCCCCcc
Q 025079 176 NCCHAMCIKCYRNWNTKSESCP 197 (258)
Q Consensus 176 ~C~H~FC~~Ci~~w~~~~~~CP 197 (258)
.|+|.||..|...|.. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 7999999999999987 5664
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=69.92 E-value=2.6 Score=30.71 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=31.4
Q ss_pred CCCcCccccccCCC--C---cceecCCCCcccHhhHHHHh--cCCCCcccccccc
Q 025079 156 LEREDECGICLEPC--T---KMVLPNCCHAMCIKCYRNWN--TKSESCPFCRGSM 203 (258)
Q Consensus 156 ~~~~~~C~ICle~~--~---~~vl~~C~H~FC~~Ci~~w~--~~~~~CP~CR~~l 203 (258)
.+.+..|.||.+.- . -..--.|.-.||..|+..-. ...-.||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 34567899999754 1 12234677899999996532 1233799997543
No 94
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=65.25 E-value=2.6 Score=29.43 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=31.9
Q ss_pred CCcCccccccCCCCc---ceecCCCCcccHhhHHHHhcC----CCCccccccccc
Q 025079 157 EREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTK----SESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR~~l~ 204 (258)
+....|.||...... ..--.|.-.||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 445679999865432 222458889999999654322 337999987664
No 95
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=63.33 E-value=0.6 Score=37.02 Aligned_cols=62 Identities=18% Similarity=0.402 Sum_probs=39.8
Q ss_pred CCcCccccccCCCC-----cceecCCCCcccHhhHHHHhcC----CCCccccccccccccCCCceeecCCC
Q 025079 157 EREDECGICLEPCT-----KMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGSMKRVNSEDLWVLTCTD 218 (258)
Q Consensus 157 ~~~~~C~ICle~~~-----~~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR~~l~~~~~~~~~~~~~~~ 218 (258)
..+..|.+|...+. ......|.|.+|.+|-..-... .-.|-+|+..-.....+-.|.+...+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG~Wf~~~~~ 123 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGFP 123 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTSHHHHTSCC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHHHHHHHhhhHHHHhcCc
Confidence 35678999998773 2455679999999997543221 12788887654433444456665443
No 96
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.30 E-value=1.9 Score=29.29 Aligned_cols=34 Identities=32% Similarity=0.727 Sum_probs=22.3
Q ss_pred CccccccCCCCc------ceecC--CCCcccHhhHHHHhcCC
Q 025079 160 DECGICLEPCTK------MVLPN--CCHAMCIKCYRNWNTKS 193 (258)
Q Consensus 160 ~~C~ICle~~~~------~vl~~--C~H~FC~~Ci~~w~~~~ 193 (258)
..|+-|.-.++. ..-.. |+|.||..|..+|....
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 467777765543 33333 88888888888886543
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.06 E-value=3.8 Score=30.70 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=29.6
Q ss_pred CCcCccccccCCCCc---ceecCCCCcccHhhHHHHhcC----CCCccccc
Q 025079 157 EREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTK----SESCPFCR 200 (258)
Q Consensus 157 ~~~~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR 200 (258)
..+..|.||.+.-.. ..-..|+..||..|+...... .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 355789999875442 334679999999999776432 22566654
No 98
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=60.63 E-value=1.2 Score=40.22 Aligned_cols=46 Identities=22% Similarity=0.466 Sum_probs=35.1
Q ss_pred CCcCccccccCCCCcceec----CCC--CcccHhhHHHHhcCCCCccccccc
Q 025079 157 EREDECGICLEPCTKMVLP----NCC--HAMCIKCYRNWNTKSESCPFCRGS 202 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~----~C~--H~FC~~Ci~~w~~~~~~CP~CR~~ 202 (258)
+....|++|-......++. .=| |.+|.-|-..|...+..||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5567999999876543332 134 578999999999999999999764
No 99
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=59.87 E-value=1.8 Score=33.58 Aligned_cols=45 Identities=18% Similarity=0.483 Sum_probs=30.5
Q ss_pred cCccccccCCCCc----ceecCCCCcccHhhHHHHhcCCCCcccccccc
Q 025079 159 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 203 (258)
Q Consensus 159 ~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l 203 (258)
...|..|-..|.. --...||..||..|..........|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 3589999988873 33367999999999866544566788885543
No 100
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=57.29 E-value=7 Score=24.98 Aligned_cols=41 Identities=24% Similarity=0.592 Sum_probs=25.9
Q ss_pred ccccccCCCC--c-ceecCCCCcccHhhHHHHhcC----CCCcccccc
Q 025079 161 ECGICLEPCT--K-MVLPNCCHAMCIKCYRNWNTK----SESCPFCRG 201 (258)
Q Consensus 161 ~C~ICle~~~--~-~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR~ 201 (258)
.|.||...-. . ..--.|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4788875432 2 222468889999999653322 226998864
No 101
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.20 E-value=3.2 Score=30.47 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCCCcCccccccCCCC---cceecCCCCcccHhhHHHHhcC----CCCccccccc
Q 025079 155 DLEREDECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGS 202 (258)
Q Consensus 155 ~~~~~~~C~ICle~~~---~~vl~~C~H~FC~~Ci~~w~~~----~~~CP~CR~~ 202 (258)
+..++..|.||...-. -..--.|...||..|+.+=+.. .-.||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3345568999987543 1223458889999999753322 2269999764
No 102
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.06 E-value=3.3 Score=28.08 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=30.5
Q ss_pred CCcCccccccCCCC---c--ceecCCCCcccHhhHHHHh-------cCCCCccccccc
Q 025079 157 EREDECGICLEPCT---K--MVLPNCCHAMCIKCYRNWN-------TKSESCPFCRGS 202 (258)
Q Consensus 157 ~~~~~C~ICle~~~---~--~vl~~C~H~FC~~Ci~~w~-------~~~~~CP~CR~~ 202 (258)
..+..|.||..... . ..--.|.-.||..|+.+-+ ...-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45578999987632 2 2335688899999997532 123379999654
No 103
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=55.20 E-value=2.1 Score=29.21 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=28.6
Q ss_pred CCcCccccccC-CCCcc---eecCCCCcccHhhHHHHhcCCC----Ccccccc
Q 025079 157 EREDECGICLE-PCTKM---VLPNCCHAMCIKCYRNWNTKSE----SCPFCRG 201 (258)
Q Consensus 157 ~~~~~C~ICle-~~~~~---vl~~C~H~FC~~Ci~~w~~~~~----~CP~CR~ 201 (258)
.+...|.||.. .|.+. .-.-|.-.||.+|-..|..+++ .|-+||.
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 44578999986 34432 2233667788888877754433 6777764
No 104
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=54.14 E-value=11 Score=34.83 Aligned_cols=46 Identities=20% Similarity=0.472 Sum_probs=32.9
Q ss_pred CCCcCccccccCCCCcceec--CCCCcccHhhHHHHhcCC----------CCcccccc
Q 025079 156 LEREDECGICLEPCTKMVLP--NCCHAMCIKCYRNWNTKS----------ESCPFCRG 201 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~--~C~H~FC~~Ci~~w~~~~----------~~CP~CR~ 201 (258)
...+..|.+|-+.-.-...- +|...||..||....... -.|=+|.-
T Consensus 90 DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34567899998765544444 799999999999886432 27888853
No 105
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=53.10 E-value=5.8 Score=27.69 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=29.9
Q ss_pred CCcCccccccCCC---C-c-ceecCCCCcccHhhHHHHh--cCCCCccccccc
Q 025079 157 EREDECGICLEPC---T-K-MVLPNCCHAMCIKCYRNWN--TKSESCPFCRGS 202 (258)
Q Consensus 157 ~~~~~C~ICle~~---~-~-~vl~~C~H~FC~~Ci~~w~--~~~~~CP~CR~~ 202 (258)
..+..|.||.+.- . . ..--.|.-.||..|+..-. ...-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4557899998653 1 1 2225688899999996532 122378888653
No 106
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=52.63 E-value=5.1 Score=32.33 Aligned_cols=44 Identities=23% Similarity=0.545 Sum_probs=31.1
Q ss_pred CcCccccccCCCC-----cceecCCCCcccHhhHHHHhcCC--CCccccccc
Q 025079 158 REDECGICLEPCT-----KMVLPNCCHAMCIKCYRNWNTKS--ESCPFCRGS 202 (258)
Q Consensus 158 ~~~~C~ICle~~~-----~~vl~~C~H~FC~~Ci~~w~~~~--~~CP~CR~~ 202 (258)
.+..|.+|...+. ..+...|.|.+|.+|-. |.... -.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 4679999998753 35557799999999973 33222 268888654
No 107
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=51.26 E-value=9.8 Score=30.91 Aligned_cols=44 Identities=23% Similarity=0.650 Sum_probs=30.9
Q ss_pred CCcCccccccCCCCcceec--CCCCcccHhhHHHHhcCCC----------Cccccc
Q 025079 157 EREDECGICLEPCTKMVLP--NCCHAMCIKCYRNWNTKSE----------SCPFCR 200 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~--~C~H~FC~~Ci~~w~~~~~----------~CP~CR 200 (258)
..+..|.||-+.-.-..-. +|...||..||........ .|=+|.
T Consensus 77 G~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 77 GYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 4457899998765433333 6889999999998865421 687775
No 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=51.23 E-value=8.6 Score=27.47 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=23.7
Q ss_pred CcCccccccCCCCc----ceecCCCCcccHhhHHHH
Q 025079 158 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 158 ~~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w 189 (258)
+...|.+|...|.. ---..||+.||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34689999988763 233569999999997553
No 109
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.00 E-value=6.7 Score=30.36 Aligned_cols=29 Identities=17% Similarity=0.494 Sum_probs=22.3
Q ss_pred CccccccCCCCc----ceecCCCCcccHhhHHH
Q 025079 160 DECGICLEPCTK----MVLPNCCHAMCIKCYRN 188 (258)
Q Consensus 160 ~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~ 188 (258)
..|.+|...|.. --...||+.||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 579999988763 23356999999999754
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.75 E-value=8.2 Score=27.45 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=23.1
Q ss_pred cCccccccCCCCc----ceecCCCCcccHhhHHHH
Q 025079 159 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 159 ~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w 189 (258)
...|.+|...|.. ---..||..||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3579999988763 233569999999998543
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=48.82 E-value=7.9 Score=28.13 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=29.9
Q ss_pred cCccccccCCCCc----ceecCCCCcccHhhHHHHhc------CCCCccccccccc
Q 025079 159 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNT------KSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~~------~~~~CP~CR~~l~ 204 (258)
...|.+|...|.. -.-..||+.||..|...... ....|-.|-..+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 3579999987763 33467999999999865421 1125666654443
No 112
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.57 E-value=10 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.488 Sum_probs=22.7
Q ss_pred CcCccccccCCCCc----ceecCCCCcccHhhHHH
Q 025079 158 REDECGICLEPCTK----MVLPNCCHAMCIKCYRN 188 (258)
Q Consensus 158 ~~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~ 188 (258)
....|.+|...|.. ---..||..||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34589999988763 22356999999999643
No 113
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.93 E-value=2.8 Score=30.50 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=31.9
Q ss_pred CcCccccccCCCC---c--ceecCCCCcccHhhHHHHhc--------CCCCccccccccc
Q 025079 158 REDECGICLEPCT---K--MVLPNCCHAMCIKCYRNWNT--------KSESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~---~--~vl~~C~H~FC~~Ci~~w~~--------~~~~CP~CR~~l~ 204 (258)
.+..|.||...-. . ..--.|...||..|+.+-+. ..-.||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4568999987532 2 22245888999999976433 2338999986654
No 114
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.64 E-value=7.4 Score=29.50 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=16.6
Q ss_pred ceecCCCCcccHhhHHHHhcCCCCccccccc
Q 025079 172 MVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 202 (258)
Q Consensus 172 ~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~ 202 (258)
+....||+.|+ .-......||.|++.
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 34456999982 112344689999865
No 115
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=43.82 E-value=20 Score=24.79 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=26.9
Q ss_pred CCcCccccccCCCCccee--cC--CC-CcccHhhHHHHh--cCCCCcccccccc
Q 025079 157 EREDECGICLEPCTKMVL--PN--CC-HAMCIKCYRNWN--TKSESCPFCRGSM 203 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl--~~--C~-H~FC~~Ci~~w~--~~~~~CP~CR~~l 203 (258)
.+..-| ||........+ -+ |. ..||..|+.--. ...-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 444567 89875332222 23 55 589999996211 1223799997654
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=43.63 E-value=12 Score=26.01 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=21.8
Q ss_pred CccccccCCCCc----ceecCCCCcccHhhHHH
Q 025079 160 DECGICLEPCTK----MVLPNCCHAMCIKCYRN 188 (258)
Q Consensus 160 ~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~ 188 (258)
..|.+|...|.. ---..||+.||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999988763 22356999999999743
No 117
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.72 E-value=9.2 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=23.6
Q ss_pred cCccccccCCCCc----ceecCCCCcccHhhHHHH
Q 025079 159 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 159 ~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w 189 (258)
...|.+|...|.. --...||+.||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3689999987763 334679999999997653
No 118
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.52 E-value=9.1 Score=32.14 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred cCccccccCCCCc----ceecCCCCcccHhhHHH
Q 025079 159 EDECGICLEPCTK----MVLPNCCHAMCIKCYRN 188 (258)
Q Consensus 159 ~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~ 188 (258)
+..|.+|...|.. --...||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999987763 23356999999999754
No 119
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=41.96 E-value=9.2 Score=25.60 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=29.6
Q ss_pred CCcCccccccCCCCc---c-eecCCCCcccHhhHHHHh-----cCCCCccccccc
Q 025079 157 EREDECGICLEPCTK---M-VLPNCCHAMCIKCYRNWN-----TKSESCPFCRGS 202 (258)
Q Consensus 157 ~~~~~C~ICle~~~~---~-vl~~C~H~FC~~Ci~~w~-----~~~~~CP~CR~~ 202 (258)
++...|+||...... . .--.|...||..|+.--. ...-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345679999876531 2 223588899999984321 123489999754
No 120
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=41.91 E-value=20 Score=27.01 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=28.0
Q ss_pred CCCcCccccccCCCCcceec--CCCCcccHhhHHHHhcCC----CCccccccccc
Q 025079 156 LEREDECGICLEPCTKMVLP--NCCHAMCIKCYRNWNTKS----ESCPFCRGSMK 204 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~~vl~--~C~H~FC~~Ci~~w~~~~----~~CP~CR~~l~ 204 (258)
...+..|.+|.+.-.-..-- .|-..||..|+. +... -.||.|+..+.
T Consensus 12 ~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 34556899998542212222 477889999986 3222 26887765443
No 121
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=41.74 E-value=14 Score=26.73 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=31.5
Q ss_pred CcCccccccCCCCc----ceecCCCCcccHhhHHHHh-------cCCCCccccccccc
Q 025079 158 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWN-------TKSESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w~-------~~~~~CP~CR~~l~ 204 (258)
....|.+|...|.. ---..||+.||..|..... .....|-.|-..+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 34589999987763 2235699999999986531 11236777866554
No 122
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=41.73 E-value=2.9 Score=30.15 Aligned_cols=30 Identities=27% Similarity=0.870 Sum_probs=20.4
Q ss_pred ceecCCCCcccHhhHHHHhcCC--CCcccccc
Q 025079 172 MVLPNCCHAMCIKCYRNWNTKS--ESCPFCRG 201 (258)
Q Consensus 172 ~vl~~C~H~FC~~Ci~~w~~~~--~~CP~CR~ 201 (258)
..-+.|+|.||..|-..|-..+ .+|..=+.
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 3445699999999999993322 25665543
No 123
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=41.19 E-value=16 Score=33.54 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=31.5
Q ss_pred cCccccccCCCCccee-cCCCCcccHhh--HHHHh--cCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMVL-PNCCHAMCIKC--YRNWN--TKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl-~~C~H~FC~~C--i~~w~--~~~~~CP~CR~~l~ 204 (258)
...|++-...+..|+. ..|.|.-|.+- +.... ...-.||+|...+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4789998888877665 56999855544 33332 33448999988764
No 124
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.71 E-value=17 Score=33.28 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=31.4
Q ss_pred cCccccccCCCCccee-cCCCCcccHhh--HHHHh--cCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMVL-PNCCHAMCIKC--YRNWN--TKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl-~~C~H~FC~~C--i~~w~--~~~~~CP~CR~~l~ 204 (258)
...|++-...+..|+. ..|.|.-|.+- +.... ...-.||+|...+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4689998888877655 56999855443 33332 23448999998775
No 125
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.46 E-value=9.3 Score=28.72 Aligned_cols=12 Identities=33% Similarity=1.102 Sum_probs=10.1
Q ss_pred cccHhhHHHHhc
Q 025079 180 AMCIKCYRNWNT 191 (258)
Q Consensus 180 ~FC~~Ci~~w~~ 191 (258)
.||..|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999943
No 126
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.35 E-value=9.4 Score=28.65 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=10.2
Q ss_pred cccHhhHHHHhc
Q 025079 180 AMCIKCYRNWNT 191 (258)
Q Consensus 180 ~FC~~Ci~~w~~ 191 (258)
.||..|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999954
No 127
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=39.80 E-value=16 Score=26.85 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=24.8
Q ss_pred CccccccCCCCc---ceecCCCCcccHhhHHHHhcC---CCCccccc
Q 025079 160 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTK---SESCPFCR 200 (258)
Q Consensus 160 ~~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~~---~~~CP~CR 200 (258)
..| ||-..... ..--.|.-.||..|+..-... .-.||.|+
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 456 78654432 222457889999998542222 23899996
No 128
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.08 E-value=26 Score=25.62 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=26.4
Q ss_pred CCcCccccccCCCCc-ce-ecC--CC-CcccHhhHHHHh--cCCCCcccccccc
Q 025079 157 EREDECGICLEPCTK-MV-LPN--CC-HAMCIKCYRNWN--TKSESCPFCRGSM 203 (258)
Q Consensus 157 ~~~~~C~ICle~~~~-~v-l~~--C~-H~FC~~Ci~~w~--~~~~~CP~CR~~l 203 (258)
.+..-| ||...... .+ --+ |. ..||..|+.--. ...-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 344556 99874332 11 123 55 579999995211 1223799997654
No 129
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.39 E-value=7.4 Score=35.55 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=0.0
Q ss_pred cCccccccCCCCc----ceecCCCCcccHhhHHHH
Q 025079 159 EDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 189 (258)
Q Consensus 159 ~~~C~ICle~~~~----~vl~~C~H~FC~~Ci~~w 189 (258)
...|.+|...|.. -....||+.||..|....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp -----------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 4689999887763 334569999999998654
No 130
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=35.37 E-value=15 Score=27.60 Aligned_cols=41 Identities=20% Similarity=0.506 Sum_probs=26.1
Q ss_pred ccccccCCCC---c-ceecCCCCcccHhhHHHHhcCC----CCcccccc
Q 025079 161 ECGICLEPCT---K-MVLPNCCHAMCIKCYRNWNTKS----ESCPFCRG 201 (258)
Q Consensus 161 ~C~ICle~~~---~-~vl~~C~H~FC~~Ci~~w~~~~----~~CP~CR~ 201 (258)
.|.||.+.-. . ..--.|...||..|+.+-+... -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5778876421 1 2224588999999996543322 27888874
No 131
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.71 E-value=21 Score=24.75 Aligned_cols=33 Identities=27% Similarity=0.566 Sum_probs=24.3
Q ss_pred CCcCccccccCCCCcceecCC-CCcccHhhHHHHh
Q 025079 157 EREDECGICLEPCTKMVLPNC-CHAMCIKCYRNWN 190 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C-~H~FC~~Ci~~w~ 190 (258)
++..-|.||.+...-. ...| +-.||..|..+-.
T Consensus 6 ee~pWC~ICneDAtlr-C~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDATLR-CAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCCEE-ETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCeEE-ecCCCCceehHHHHHHHc
Confidence 3446799999995544 3558 7799999987753
No 132
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=32.18 E-value=17 Score=31.21 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=24.6
Q ss_pred CccccccCCCC--c-ceecCCCCcccHhhHHHHhcC-----CCCcccccc
Q 025079 160 DECGICLEPCT--K-MVLPNCCHAMCIKCYRNWNTK-----SESCPFCRG 201 (258)
Q Consensus 160 ~~C~ICle~~~--~-~vl~~C~H~FC~~Ci~~w~~~-----~~~CP~CR~ 201 (258)
..|.+|...-. . ...-.|...||..|+.+=+.. .-.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 35888875322 1 233458889999999854322 236999964
No 133
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=29.62 E-value=12 Score=24.98 Aligned_cols=43 Identities=19% Similarity=0.421 Sum_probs=23.7
Q ss_pred CcCccccccCCCCccee--cC--CC-CcccHhhHHHHh--cCCCCcccccc
Q 025079 158 REDECGICLEPCTKMVL--PN--CC-HAMCIKCYRNWN--TKSESCPFCRG 201 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl--~~--C~-H~FC~~Ci~~w~--~~~~~CP~CR~ 201 (258)
+..-| ||........+ -+ |. ..||..|+.--. ...-.||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 33456 89864332222 23 44 579999996111 12237898864
No 134
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.65 E-value=33 Score=23.44 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=29.3
Q ss_pred CcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 158 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 158 ~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
....|.-|-+.+...++..-+..||..|. .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 34689999987776555556778888885 6889988875
No 135
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.79 E-value=57 Score=23.13 Aligned_cols=31 Identities=23% Similarity=0.563 Sum_probs=22.4
Q ss_pred CCCcCccccccCCCCc-----ceecCCCCcccHhhH
Q 025079 156 LEREDECGICLEPCTK-----MVLPNCCHAMCIKCY 186 (258)
Q Consensus 156 ~~~~~~C~ICle~~~~-----~vl~~C~H~FC~~Ci 186 (258)
...+..|..|.+.+.. .+-..|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 3556789999987652 455678888887775
No 136
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.77 E-value=25 Score=24.75 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=25.4
Q ss_pred CccccccCCCC--c-ceecCCCCcccHhhHHHHhcC-----CCCccccc
Q 025079 160 DECGICLEPCT--K-MVLPNCCHAMCIKCYRNWNTK-----SESCPFCR 200 (258)
Q Consensus 160 ~~C~ICle~~~--~-~vl~~C~H~FC~~Ci~~w~~~-----~~~CP~CR 200 (258)
..|.||...-. . ..--.|...||..|+.+=+.. .-.||.|+
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 36788885322 2 222458889999999753322 23688775
No 137
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=24.46 E-value=35 Score=25.52 Aligned_cols=29 Identities=17% Similarity=0.469 Sum_probs=19.0
Q ss_pred CccccccCCCC---------c-ceecCCCCcccHhhHHH
Q 025079 160 DECGICLEPCT---------K-MVLPNCCHAMCIKCYRN 188 (258)
Q Consensus 160 ~~C~ICle~~~---------~-~vl~~C~H~FC~~Ci~~ 188 (258)
..|.||++.-. . ..-..|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 35888876431 1 23356889999999854
No 138
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.31 E-value=47 Score=21.88 Aligned_cols=37 Identities=19% Similarity=0.428 Sum_probs=26.7
Q ss_pred CccccccCCCC--cceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 160 DECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~--~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..|.-|-+.+. ..++..-+..||..|. .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEECccccCcccC--------eECCCCCcCC
Confidence 47888888776 3455556777888774 6888887775
No 139
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.16 E-value=38 Score=22.83 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=23.9
Q ss_pred CccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..|+-|-..+...++..-+..||.+|. .|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 357777776665555556666777664 5777776663
No 140
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.57 E-value=63 Score=22.03 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=27.7
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
...|.-|-+.+....+..-+..||..|. .|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCccCCCEecceEEEECcceeCCCCC--------EeCCCCCccC
Confidence 3579999887766555556777777774 6888988875
No 141
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.46 E-value=39 Score=25.25 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=32.4
Q ss_pred CccccccCCCC---cceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 160 DECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~---~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
+.|..|-..+. ......=+..||..|..+-......|-.|..+|.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 57888877764 2233445778999999886655558999998886
No 142
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=22.83 E-value=20 Score=23.87 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=24.2
Q ss_pred CcCccccccCCCCc-cee-cC--CC-CcccHhhHHHHh--cCCCCcccccc
Q 025079 158 REDECGICLEPCTK-MVL-PN--CC-HAMCIKCYRNWN--TKSESCPFCRG 201 (258)
Q Consensus 158 ~~~~C~ICle~~~~-~vl-~~--C~-H~FC~~Ci~~w~--~~~~~CP~CR~ 201 (258)
+..-| ||...... .+. -+ |. ..||..|+.--. ...-.||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 33456 89864332 211 23 65 589999996211 12237998864
No 143
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.33 E-value=43 Score=23.29 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=28.0
Q ss_pred CCcCccccccCCCCc--cee-c--CCCCcccHhhHHHHhc---------CCCCccccccc
Q 025079 157 EREDECGICLEPCTK--MVL-P--NCCHAMCIKCYRNWNT---------KSESCPFCRGS 202 (258)
Q Consensus 157 ~~~~~C~ICle~~~~--~vl-~--~C~H~FC~~Ci~~w~~---------~~~~CP~CR~~ 202 (258)
+....| ||-..... .+. - .|...||..|+.--.. ..-.||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 344667 89876332 222 2 5888999999943211 23489999754
No 144
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.55 E-value=35 Score=23.91 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=28.4
Q ss_pred cCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 159 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 159 ~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
...|..|-+.+....+..-+..||..|. .|-.|+.+|.
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEecceEEEECCccccccCC--------ccCCCCCCCC
Confidence 4679999887776555556777777774 6889988875
No 145
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.41 E-value=46 Score=23.21 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=29.2
Q ss_pred CCcCccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 157 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 157 ~~~~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
.....|.-|-+.+...++..-+..||..|. .|-.|+.+|.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTTC--------CCSSSCCCTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccCC--------EecCCCCCCC
Confidence 344679999987776555556777888774 6888988775
No 146
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.86 E-value=40 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=26.6
Q ss_pred CccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..|+.|-+.+...++..-+..||..|. .|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceeccccC--------CccCCCCccC
Confidence 468888887776555556777777774 6888888774
No 147
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.81 E-value=26 Score=24.13 Aligned_cols=41 Identities=24% Similarity=0.486 Sum_probs=24.3
Q ss_pred ccccccCCCCc---ceecCCCCcccHhhHHHHhcC-----CCCcccccc
Q 025079 161 ECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTK-----SESCPFCRG 201 (258)
Q Consensus 161 ~C~ICle~~~~---~vl~~C~H~FC~~Ci~~w~~~-----~~~CP~CR~ 201 (258)
.|.||...-.. ..--.|...||..|+.+=+.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677753222 122357789999999753322 236888864
No 148
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.12 E-value=34 Score=22.56 Aligned_cols=37 Identities=19% Similarity=0.490 Sum_probs=25.5
Q ss_pred CccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..|..|-+.+...++..-+..||.+|. .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTTS--------BCSSSCCBCS
T ss_pred CcCccCCCEecceEEEECcccccccCC--------EeCCCCCcCC
Confidence 468888877665445445666777764 6888887775
No 149
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.12 E-value=42 Score=22.04 Aligned_cols=37 Identities=22% Similarity=0.502 Sum_probs=25.3
Q ss_pred CccccccCCCCcceecCCCCcccHhhHHHHhcCCCCccccccccc
Q 025079 160 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 204 (258)
Q Consensus 160 ~~C~ICle~~~~~vl~~C~H~FC~~Ci~~w~~~~~~CP~CR~~l~ 204 (258)
..|..|-+.+....+..-+..||..|. .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCCC--------ccCCCCCcCC
Confidence 468888776665445546677777774 6888887774
No 150
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=20.08 E-value=33 Score=24.15 Aligned_cols=41 Identities=27% Similarity=0.462 Sum_probs=23.9
Q ss_pred ccccccCCCCc-cee--cCCCCcccHhhHHHHhcCC-----CCcccccc
Q 025079 161 ECGICLEPCTK-MVL--PNCCHAMCIKCYRNWNTKS-----ESCPFCRG 201 (258)
Q Consensus 161 ~C~ICle~~~~-~vl--~~C~H~FC~~Ci~~w~~~~-----~~CP~CR~ 201 (258)
.|.||...-.. ..+ -.|...||..|+.+-+... -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 45566654332 222 3577889999997643321 36888864
Done!