BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025080
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 237 bits (604), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 164/259 (63%), Gaps = 1/259 (0%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+TK I ASI+DDT+D+Y +EEL A++RWDI +D +PEYMK YKALLD + E+
Sbjct: 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM 355
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
Q +A+ GR + Y K M L Q Y V+AKW + Y P+++E+ L +CGY MLA
Sbjct: 356 VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI 415
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
SF+GM D+ E F+W + DPKI AS++ICR +D+ +F+ +R S +ECY+++
Sbjct: 416 TSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE 475
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH 240
YGV+A +AWKD+N+EFLKPT P ++ R N+ARV++ L ++GD YT+
Sbjct: 476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY 535
Query: 241 -SHAIKDQIAAVLRDPVTI 258
A K I ++L +P+ +
Sbjct: 536 VGKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 202 bits (514), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 159/260 (61%), Gaps = 3/260 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+ KTI SI+DDTFDAYG +EL+ +A+QRWDI +D LP+YMK+ YKA+LD + +
Sbjct: 292 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 351
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
E++L+ GRS + + E+M+E+V+ Y V++ WF EGY P EY L + Y++LAT
Sbjct: 352 EKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLAT 411
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
S+LGM A ++ FEW+SK+PKI AS +ICR+ +D + + E+ RG IA+G+EC ++
Sbjct: 412 TSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 470
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239
YG+S AWKD+NE L+PT + N+AR+IE D YT
Sbjct: 471 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYT 530
Query: 240 HSHAI-KDQIAAVLRDPVTI 258
H + K I +L D + I
Sbjct: 531 HPEKVLKPHIINLLVDSIKI 550
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 158/260 (60%), Gaps = 3/260 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+ KTI SI+DDTFDAYG +EL+ +A+QRWDI +D LP+YMK+ YKA+LD + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
E++L+ GRS + + E+M+E+V+ Y V++ WF EGY P EY L + Y+ LAT
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
S+LGM A ++ FEW+SK+PKI AS +ICR+ +D + + E+ RG IA+G+EC ++
Sbjct: 410 TSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239
YG+S AWKD+NE L+PT + N+AR++E D YT
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT 528
Query: 240 H-SHAIKDQIAAVLRDPVTI 258
H +K I +L D + I
Sbjct: 529 HPEEVLKPHIINLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 158/260 (60%), Gaps = 3/260 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+ KTI SI+DDTFDAYG +EL+ +A+QRWDI +D LP+YMK+ YKA+LD + +
Sbjct: 277 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 336
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
E++L+ GRS + + E+M+E+V+ Y V++ WF EGY P EY L + Y+ LAT
Sbjct: 337 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 396
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
S+LGM A ++ FEW+SK+PKI AS +ICR+ +D + + E+ RG IA+G+EC ++
Sbjct: 397 TSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 455
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239
YG+S AWKD+NE L+PT + N+AR++E D YT
Sbjct: 456 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT 515
Query: 240 HSHAI-KDQIAAVLRDPVTI 258
H + K I +L D + I
Sbjct: 516 HPEKVLKPHIINLLVDSIKI 535
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 158/260 (60%), Gaps = 3/260 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+ KTI SI+DDTFDAYG +EL+ +A+QRWDI +D LP+YMK+ YKA+LD + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
E++L+ GRS + + E+M+E+V+ Y V++ WF EGY P EY L + Y+ LAT
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
S+LGM A ++ FEW+SK+PKI AS +ICR+ +D + + E+ RG IA+G+EC ++
Sbjct: 410 TSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239
YG+S AWKD+NE L+PT + N+AR++E D YT
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT 528
Query: 240 HSHAI-KDQIAAVLRDPVTI 258
H + K I +L D + I
Sbjct: 529 HPEKVLKPHIINLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 158/260 (60%), Gaps = 3/260 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+ KTI SI+DDTFDAYG +EL+ +A+QRWDI +D LP+YMK+ YKA+LD + +
Sbjct: 292 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 351
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
E++L+ GRS + + E+M+E+V+ Y V++ WF EGY P EY L + Y+ LAT
Sbjct: 352 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 411
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
S+LGM A ++ FEW+SK+PKI AS +ICR+ +D + + E+ RG IA+G+EC ++
Sbjct: 412 TSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 470
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239
YG+S AWKD+NE L+PT + N+AR++E D YT
Sbjct: 471 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT 530
Query: 240 HSHAI-KDQIAAVLRDPVTI 258
H + K I +L D + I
Sbjct: 531 HPEKVLKPHIINLLVDSIKI 550
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 158/260 (60%), Gaps = 3/260 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+ KTI SI+DDTFDAYG +EL+ +A+QRWDI +D LP+YMK+ YKA+LD + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
E++L+ GRS + + E+M+E+V+ Y V++ WF EGY P EY L + Y+ LAT
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
S+LGM A ++ FEW+SK+PKI AS +ICR+ +D + + E+ RG IA+G+EC ++
Sbjct: 410 TSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239
YG+S AWKD+NE L+PT + N+AR++E D YT
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT 528
Query: 240 H-SHAIKDQIAAVLRDPVTI 258
H +K I +L D + I
Sbjct: 529 HPEEVLKPHIINLLVDSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 158/260 (60%), Gaps = 3/260 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+ KTI SI+DDTFDAYG +EL+ +A+QRWDI +D LP+YMK+ YKA+LD + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
E++L+ GRS + + E+M+E+V+ Y V++ WF EGY P EY L + Y+ LAT
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
S+LGM A ++ FEW+SK+PKI AS +ICR+ +D + + E+ RG IA+G+EC ++
Sbjct: 410 TSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239
YG+S AWKD+NE L+PT + N+AR++E D YT
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT 528
Query: 240 HSHAI-KDQIAAVLRDPVTI 258
H + K I +L D + I
Sbjct: 529 HPEKVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 196 bits (499), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 157/260 (60%), Gaps = 3/260 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+ KTI SI+DDTFDAYG +EL+ +A+QRWDI +D LP+YMK+ YKA+LD + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
E++L+ GRS + + E+M+E+V+ Y V++ WF EGY P EY L + Y+ LAT
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
S+LGM A ++ FEW+SK+PKI AS +I R+ +D + + E+ RG IA+G+EC ++
Sbjct: 410 TSYLGM-KSATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239
YG+S AWKD+NE L+PT + N+AR++E D YT
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT 528
Query: 240 H-SHAIKDQIAAVLRDPVTI 258
H +K I +L D + I
Sbjct: 529 HPEEVLKPHIINLLVDSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 196 bits (499), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 157/260 (60%), Gaps = 3/260 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+ KTI SI+DDTFDAYG +EL+ +A+QRWDI +D LP+YMK+ YKA+LD + +
Sbjct: 290 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY 349
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
E++L+ GRS + + E+M+E+V+ Y V++ WF EGY P EY L + Y+ LAT
Sbjct: 350 EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLAT 409
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
S+LGM A ++ FEW+SK+PKI AS +I R+ +D + + E+ RG IA+G+EC ++
Sbjct: 410 TSYLGM-KSATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRD 468
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239
YG+S AWKD+NE L+PT + N+AR++E D YT
Sbjct: 469 YGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT 528
Query: 240 H-SHAIKDQIAAVLRDPVTI 258
H +K I +L D + I
Sbjct: 529 HPEEVLKPHIINLLVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 124/249 (49%), Gaps = 1/249 (0%)
Query: 9 SIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEG 68
+IIDD +D YG +EL+L +AV+RWD+ A++ LP+YMK+ + AL +T NEI D K+
Sbjct: 302 TIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDK 361
Query: 69 RSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCD 128
+ LPY + +L + +AKW PT+D+Y+ S + ++ +
Sbjct: 362 GENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQ 421
Query: 129 VANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAXXX 188
KE E + K I + S I RL ND+ S E RG A+ V CY++ G+S
Sbjct: 422 NIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELA 481
Query: 189 XXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHAI-KDQ 247
WK MN+E L + F +E N+AR GD +T + + +
Sbjct: 482 TESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKR 541
Query: 248 IAAVLRDPV 256
+ +V+ +P+
Sbjct: 542 VLSVITEPI 550
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 5/255 (1%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
+TK + IDD FD YG EEL+L A+QRWDI +M LP YM++ Y AL + NE+
Sbjct: 312 LTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEM 371
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
D ++ PY ++ L++ Y ++AKW+ +G+ P+ +EY +S G + +
Sbjct: 372 AYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILS 431
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
+ F + D +EA E + K I AS I RL +D+ + E +RG + V+CY+ +
Sbjct: 432 HLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNE 491
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFL-NKKGDWYT 239
S WK MN+E + ++F +E N+AR+ +++ + D +
Sbjct: 492 KNASEEEAREHVRSLIDQTWKMMNKEMM-TSSFSKYFVEVSANLARMAQWIYQHESDGFG 550
Query: 240 HSHAIKDQIAAVLRD 254
H++ + +LRD
Sbjct: 551 MQHSL---VNKMLRD 562
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 130 bits (327), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 136/262 (51%), Gaps = 5/262 (1%)
Query: 2 TKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIE 61
TK +++DD +D YG +ELKL EAV+RWD+ + LP+YMK+ Y+ D +E+
Sbjct: 556 TKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVA 615
Query: 62 QDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATN 121
+ KE + + ++ ++ + Y+ +A+W + YVPT DEY G+ S G +L +
Sbjct: 616 WEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLS 675
Query: 122 SFLGM-CDVANKEAFEWISKDPK--ISTASSVICRLRNDIVSQQFEQKRGHIASGVECYI 178
L M + ++EA E + + ++ +S+I RL +D + + E+ RG +AS +ECY+
Sbjct: 676 GVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYM 735
Query: 179 KQYG-VSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDW 237
K + + A K++ EFLKP P A + F RV + K GD
Sbjct: 736 KDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDG 795
Query: 238 YTHSH-AIKDQIAAVLRDPVTI 258
+ S +KD I L +P+ +
Sbjct: 796 FGVSKLEVKDHIKECLIEPLPL 817
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 127/253 (50%), Gaps = 2/253 (0%)
Query: 5 IYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDL 64
I A++IDD +D YG +EL+L + +RWD ++ LP YM++ Y + + ++ D+
Sbjct: 295 IVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDI 354
Query: 65 AKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFL 124
KE L Y ++ + +LV+ YF +AKW+ GY P+ DEY + +S + + ++
Sbjct: 355 LKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYF 414
Query: 125 GMCDVANKEA-FEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGV 183
+ ++ A + + + I + +I RL +D+ + FE RG + ++CY+K+
Sbjct: 415 TFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNA 474
Query: 184 SAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHA 243
S AWKDMN FP ++ NI RV +F+ GD + H+
Sbjct: 475 SEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHS 534
Query: 244 -IKDQIAAVLRDP 255
+ IA +L +P
Sbjct: 535 KTYEHIAGLLFEP 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 2/257 (0%)
Query: 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
M K ++IDD +D YG EEL+ + ++RWDI ++D LP+YM++ + AL + ++
Sbjct: 285 MGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDT 344
Query: 61 EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
D+ KE + +PY ++ +L Y V+A+WF G+ P+ +EY S + T
Sbjct: 345 SYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLT 404
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
+ F + D KE + + K + SS + RL +D+ + E RG + ++CY+
Sbjct: 405 HIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSD 464
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFL-KPTAFPVALIERPFNIARVIEFLNKKGDWYT 239
Y S WK MN E + K + F I ++ R+ + + GD +
Sbjct: 465 YNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHG 524
Query: 240 HSHA-IKDQIAAVLRDP 255
H I Q+ L +P
Sbjct: 525 TQHPIIHQQMTRTLFEP 541
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 12/262 (4%)
Query: 2 TKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIE 61
TKT I+DD +DA+G ++LKL E+V+RWD+ +D +P+ MK+ + +TFN
Sbjct: 528 TKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFN--- 584
Query: 62 QDLAKEGRS----SYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFM 117
D+AKEGR L Y + + ++ Y +A+W YVP+++EY VS
Sbjct: 585 -DIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGT 643
Query: 118 LATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECY 177
+ S L +V E I ++ + + RL ND + Q E+ +G +AS ++CY
Sbjct: 644 VVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCY 703
Query: 178 IKQY-GVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGD 236
+K + +S NA +++N EF+ P F AR+++ +GD
Sbjct: 704 MKDHPKISEEEALQHVYSVMENALEELNREFVN-NKIPDIYKRLVFETARIMQLFYMQGD 762
Query: 237 WYTHSH--AIKDQIAAVLRDPV 256
T SH IK+ + L PV
Sbjct: 763 GLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 108/252 (42%), Gaps = 3/252 (1%)
Query: 10 IIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGR 69
+ DD D + +ELK E V+RWD + +PE M+ +K E+ D+ K
Sbjct: 505 LFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQG 564
Query: 70 SSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDV 129
L + ++ + Y + +W GY+PT++EY +S G L M ++
Sbjct: 565 RDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGEL 624
Query: 130 ANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQY-GVSAXXX 188
+ E + + S+ RL ND + Q E+ RG ASG+ CY+K G +
Sbjct: 625 VKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDA 684
Query: 189 XXXXXXXXXNAWKDMNEEFLKPTA-FPVALIERPFNIARVIEFLNKKGDWY-THSHAIKD 246
A K+ + E+ KP+ P+ FN+ ++ K D Y + IKD
Sbjct: 685 IKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKD 744
Query: 247 QIAAVLRDPVTI 258
I V DP+ +
Sbjct: 745 YIRKVYIDPIQV 756
>pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
Length = 220
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 144 ISTASSVICRLRNDIVSQQFEQKRGHIASG----------VECYIKQYG 182
I +A+S+I ++ D ++ +QK G SG +E Y KQYG
Sbjct: 140 IVSAASIIAKVTRDREIEKLKQKYGEFGSGYPSDPRTKEWLEEYYKQYG 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,495,636
Number of Sequences: 62578
Number of extensions: 284784
Number of successful extensions: 581
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 21
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)