Query 025080
Match_columns 258
No_of_seqs 169 out of 813
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 03:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 1.1E-79 3.6E-84 583.1 19.3 258 1-258 296-554 (554)
2 3m00_A Aristolochene synthase; 100.0 1.5E-78 5E-83 574.9 19.9 257 1-258 292-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 1.8E-78 6.3E-83 575.2 20.3 257 1-257 294-551 (555)
4 1n1b_A (+)-bornyl diphosphate 100.0 1.9E-74 6.6E-79 549.8 19.1 257 1-257 291-549 (549)
5 2ong_A 4S-limonene synthase; m 100.0 6.4E-74 2.2E-78 546.3 21.6 257 1-257 285-543 (543)
6 3p5p_A Taxadiene synthase; cla 100.0 2E-73 6.9E-78 557.9 20.0 258 1-258 496-756 (764)
7 3sdr_A Alpha-bisabolene syntha 100.0 2.7E-73 9.4E-78 560.2 19.6 258 1-258 555-817 (817)
8 3s9v_A Abietadiene synthase, c 100.0 5.9E-73 2E-77 555.9 20.7 256 1-257 527-785 (785)
9 2j5c_A 1,8-cineole synthase; t 100.0 2.5E-73 8.6E-78 543.7 17.1 256 1-257 312-569 (569)
10 1ps1_A Pentalenene synthase; a 100.0 8.5E-47 2.9E-51 340.7 9.9 206 1-217 69-277 (337)
11 1di1_A Aristolochene synthase; 100.0 7.7E-45 2.6E-49 322.6 8.8 192 1-207 65-264 (300)
12 3kb9_A EPI-isozizaene synthase 100.0 6.2E-44 2.1E-48 327.7 6.8 201 1-207 109-312 (382)
13 3bny_A Aristolochene synthase; 100.0 4.9E-43 1.7E-47 313.9 9.5 192 1-207 79-278 (320)
14 3v1v_A 2-MIB synthase, 2-methy 100.0 1.2E-34 4E-39 269.1 11.2 199 2-207 180-390 (433)
15 3pya_A ENT-copalyl diphosphate 100.0 1.6E-34 5.4E-39 280.7 6.6 203 1-257 502-720 (727)
16 1yyq_A Trichodiene synthase; t 99.8 1.7E-19 6E-24 164.2 7.2 183 2-206 90-276 (374)
17 3ipi_A Geranyltranstransferase 92.2 0.37 1.3E-05 41.9 7.4 141 72-226 128-277 (295)
18 3lmd_A Geranylgeranyl pyrophos 91.4 0.89 3E-05 40.6 9.1 104 72-181 161-275 (360)
19 3acx_A Dehydrosqualene synthas 89.9 4.8 0.00017 34.5 12.3 169 9-205 51-231 (293)
20 3rmg_A Octaprenyl-diphosphate 88.0 3.3 0.00011 36.4 10.0 88 71-162 133-220 (334)
21 3oyr_A Trans-isoprenyl diphosp 86.5 5.5 0.00019 35.2 10.6 88 71-163 151-239 (345)
22 3m0g_A Farnesyl diphosphate sy 86.4 1.4 4.8E-05 38.2 6.5 110 81-205 147-269 (297)
23 3mzv_A Decaprenyl diphosphate 86.3 8.7 0.0003 33.8 11.8 88 71-162 139-226 (341)
24 1rtr_A Geranyltranstransferase 86.1 1.8 6.1E-05 37.6 7.0 112 81-205 148-271 (301)
25 3ts7_A Geranyltranstransferase 85.8 4 0.00014 35.8 9.2 111 81-204 158-281 (324)
26 3p8l_A Geranyltranstransferase 85.6 2.6 9.1E-05 36.6 7.9 111 82-205 157-279 (302)
27 2ftz_A Geranyltranstransferase 85.0 6.2 0.00021 33.9 9.9 120 72-205 135-264 (284)
28 4hd1_A Squalene synthase HPNC; 84.9 18 0.0006 31.0 15.1 143 9-187 52-199 (294)
29 3p8r_A Geranyltranstransferase 83.7 2.5 8.4E-05 36.8 6.8 111 82-205 159-282 (302)
30 4f62_A Geranyltranstransferase 83.3 3.6 0.00012 36.0 7.7 111 82-205 152-275 (317)
31 2h8o_A Geranyltranstransferase 82.7 3.3 0.00011 36.5 7.3 111 81-205 192-315 (335)
32 3lsn_A Geranyltranstransferase 82.2 3.9 0.00013 35.5 7.5 109 83-204 154-275 (304)
33 3apz_A Geranyl diphosphate syn 81.9 7.4 0.00025 34.3 9.4 88 72-163 154-241 (348)
34 1wy0_A Geranylgeranyl pyrophos 81.0 4.8 0.00016 35.4 7.7 87 72-162 138-224 (342)
35 4dhd_A Polyprenyl synthetase; 80.9 4.9 0.00017 35.7 7.8 88 72-162 133-231 (358)
36 3pko_A Geranylgeranyl pyrophos 80.4 13 0.00044 32.6 10.3 103 72-180 144-258 (334)
37 3lom_A Geranyltranstransferase 80.1 6.2 0.00021 34.4 8.1 112 82-204 159-282 (313)
38 3pde_A Farnesyl-diphosphate sy 78.7 7.4 0.00025 33.8 8.1 111 82-205 156-278 (309)
39 3uca_A Geranyltranstransferase 77.8 7.2 0.00024 34.2 7.8 112 82-205 181-304 (324)
40 1rqj_A Geranyltranstransferase 73.4 9 0.00031 33.0 7.2 112 81-205 152-276 (299)
41 3npk_A Geranyltranstransferase 72.7 18 0.00061 31.1 8.9 134 80-236 144-286 (291)
42 3llw_A Geranyltranstransferase 71.7 7.4 0.00025 33.9 6.2 112 81-204 159-280 (311)
43 3nf2_A Putative polyprenyl syn 71.6 12 0.00041 33.1 7.7 86 72-162 144-230 (352)
44 1wmw_A Geranylgeranyl diphosph 71.4 14 0.00047 32.3 8.0 84 72-162 131-218 (330)
45 2j1p_A Geranylgeranyl pyrophos 65.7 4.1 0.00014 35.1 3.3 108 83-205 162-272 (293)
46 1uby_A FPS, farnesyl diphospha 62.1 19 0.00064 32.0 7.0 88 72-163 170-264 (367)
47 2q80_A Geranylgeranyl pyrophos 61.1 26 0.0009 30.1 7.6 85 71-162 111-195 (301)
48 2e8v_A Geranylgeranyl pyrophos 55.5 20 0.00068 31.4 5.9 87 72-162 132-220 (340)
49 2azj_A Geranylgeranyl pyrophos 55.5 24 0.00082 30.2 6.3 117 72-205 136-258 (289)
50 1yhl_A Farnesyl pyrophosphate 55.5 20 0.00067 31.7 5.9 87 72-162 152-256 (362)
51 3fau_A NEDD4-binding protein 2 52.3 13 0.00045 25.2 3.4 23 181-203 6-28 (82)
52 3aqb_B Component B of hexapren 51.2 19 0.00064 31.3 5.0 87 72-162 131-217 (325)
53 3kra_B Geranyl diphosphate syn 49.2 9.2 0.00031 32.6 2.6 93 83-204 151-244 (274)
54 2her_A Fragment, farnesyl pyro 48.8 33 0.0011 30.5 6.3 86 72-162 169-260 (368)
55 3tc1_A Octaprenyl pyrophosphat 47.4 62 0.0021 27.9 7.7 82 72-162 123-206 (315)
56 2qis_A Farnesyl pyrophosphate 41.6 30 0.001 30.7 4.9 87 72-162 177-270 (374)
57 1v4e_A Octoprenyl-diphosphate 41.0 38 0.0013 29.0 5.3 84 71-164 127-212 (299)
58 2zqe_A MUTS2 protein; alpha/be 38.5 30 0.001 23.7 3.5 21 181-201 10-30 (83)
59 4akk_A Nitrate regulatory prot 37.6 28 0.00096 31.4 4.1 53 147-199 346-399 (423)
60 1d0q_A DNA primase; zinc-bindi 37.3 28 0.00095 24.8 3.3 30 167-196 64-93 (103)
61 2q58_A Fragment, farnesyl pyro 36.8 14 0.00048 32.8 1.9 86 74-162 171-260 (368)
62 1xri_A AT1G05000; structural g 36.6 13 0.00046 27.7 1.5 26 170-195 106-131 (151)
63 2d9i_A NEDD4-binding protein 2 35.2 31 0.0011 24.0 3.2 22 181-202 14-35 (96)
64 1tr8_A Conserved protein (MTH1 35.2 26 0.0009 25.2 2.8 27 168-194 63-89 (102)
65 1l1q_A Adenine phosphoribosylt 33.5 12 0.00041 29.5 0.8 21 8-28 120-140 (186)
66 1nul_A XPRT, xanthine-guanine 33.3 17 0.00057 27.7 1.6 21 8-28 84-104 (152)
67 3vj8_A Squalene synthase; farn 33.3 2.3E+02 0.0077 24.6 9.2 150 79-239 119-284 (343)
68 3lk5_A Geranylgeranyl pyrophos 32.3 66 0.0023 28.5 5.6 77 80-162 184-263 (380)
69 1vch_A Phosphoribosyltransfera 31.8 13 0.00046 28.7 0.8 20 8-27 123-142 (175)
70 1vdm_A Purine phosphoribosyltr 31.2 13 0.00044 28.1 0.6 21 8-28 86-106 (153)
71 3emu_A Leucine rich repeat and 30.2 42 0.0014 25.5 3.5 24 171-194 102-126 (161)
72 1y0b_A Xanthine phosphoribosyl 29.4 15 0.00053 29.1 0.8 21 8-28 123-143 (197)
73 3fx7_A Putative uncharacterize 27.4 1.5E+02 0.0052 20.8 5.6 18 17-34 4-21 (94)
74 1a3c_A PYRR, pyrimidine operon 27.4 18 0.00061 28.2 0.8 21 8-28 101-121 (181)
75 1g2q_A Adenine phosphoribosylt 27.1 18 0.00061 28.5 0.8 21 8-28 125-145 (187)
76 1ufr_A TT1027, PYR mRNA-bindin 27.1 18 0.00062 28.2 0.8 21 8-28 99-119 (181)
77 1zn8_A APRT, adenine phosphori 26.7 19 0.00064 28.1 0.8 21 8-28 123-143 (180)
78 3qd7_X Uncharacterized protein 26.6 55 0.0019 24.7 3.5 34 165-202 39-74 (137)
79 2yzk_A OPRT, oprtase, orotate 26.3 19 0.00065 28.1 0.8 22 8-29 109-130 (178)
80 2dy0_A APRT, adenine phosphori 26.0 19 0.00066 28.4 0.8 21 8-28 129-149 (190)
81 2ki0_A DS119; beta-alpha-beta, 25.7 64 0.0022 17.8 2.6 17 17-33 10-26 (36)
82 2p1z_A Phosphoribosyltransfera 25.4 22 0.00075 27.9 1.0 22 8-29 117-138 (180)
83 2x3m_A Hypothetical protein OR 24.6 92 0.0031 24.3 4.4 109 80-196 93-202 (239)
84 3s4e_A Dual specificity protei 24.2 55 0.0019 24.1 3.1 24 171-194 96-120 (144)
85 3s4o_A Protein tyrosine phosph 24.1 51 0.0018 24.5 3.0 25 170-194 123-148 (167)
86 1nh1_A Avirulence B protein; h 23.8 1.9E+02 0.0066 24.6 6.5 70 32-113 48-121 (330)
87 2geb_A Hypoxanthine-guanine ph 23.2 22 0.00075 27.9 0.6 19 8-26 101-119 (185)
88 2nt2_A Protein phosphatase sli 23.2 59 0.002 23.9 3.1 23 172-194 97-120 (145)
89 1hgx_A HGXPRTASE, hypoxanthine 23.1 22 0.00076 27.8 0.6 19 8-26 98-116 (183)
90 1lh0_A OMP synthase; loop clos 23.0 37 0.0013 27.4 2.0 23 8-30 120-142 (213)
91 3rz2_A Protein tyrosine phosph 22.2 52 0.0018 25.6 2.7 27 168-194 129-155 (189)
92 1yfz_A Hypoxanthine-guanine ph 22.1 24 0.00081 28.3 0.6 19 8-26 121-139 (205)
93 3ic3_A Putative pyruvate dehyd 21.9 1.3E+02 0.0044 21.5 4.4 38 151-199 49-86 (101)
94 1wrm_A Dual specificity phosph 21.3 78 0.0027 23.9 3.5 20 175-194 103-122 (165)
95 3qb5_K Translin-associated pro 20.9 2.3E+02 0.0078 24.0 6.7 57 48-105 92-148 (290)
96 3f81_A Dual specificity protei 20.8 67 0.0023 24.6 3.1 24 171-194 130-154 (183)
97 1qb7_A APRT, adenine phosphori 20.1 29 0.001 28.5 0.8 21 8-28 141-161 (236)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.1e-79 Score=583.06 Aligned_cols=258 Identities=45% Similarity=0.852 Sum_probs=242.2
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|++.++.++||.+++.|++++|
T Consensus 296 ~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w 375 (554)
T 3g4d_A 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAM 375 (554)
T ss_dssp HHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999888878999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+++++||++||+|+++||+||+||||++|.+|+|++++++++++++|+.+|+++++|++++|+|+++++.++||+|||+|
T Consensus 376 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S 455 (554)
T 3g4d_A 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAE 455 (554)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhhhhccCCCCCC
Q 025080 161 QQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH 240 (258)
Q Consensus 161 ~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~ 240 (258)
|++|+++|+++|+|+|||+|||+|+|+|+++++++++++||+||++|++++++|++|+++++|++|+++++|+++||||.
T Consensus 456 ~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~ 535 (554)
T 3g4d_A 456 HKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY 535 (554)
T ss_dssp HCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----C
T ss_pred hhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred c-HHHHHHHHhhcccccCC
Q 025080 241 S-HAIKDQIAAVLRDPVTI 258 (258)
Q Consensus 241 ~-~~~~~~i~~l~~~p~~~ 258 (258)
| .+||++|++||++||++
T Consensus 536 ~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 536 VGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp CCHHHHHHHHHHHTCCCCC
T ss_pred ccHHHHHHHHHHhcCCCCC
Confidence 9 78999999999999985
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.5e-78 Score=574.86 Aligned_cols=257 Identities=44% Similarity=0.815 Sum_probs=246.3
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|+++++.++||.+++.|++++|
T Consensus 292 ~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w 371 (550)
T 3m00_A 292 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM 371 (550)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998888878999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+++++||++||+|+++||+||+||||++|.+|+|++++++++++++ +.+|+++++|+.++|+|+++++.++||+|||+|
T Consensus 372 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S 450 (550)
T 3m00_A 372 KEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTAT 450 (550)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchh
Confidence 9999999999999999999999999999999999999999998877 679999999999999999999999999999999
Q ss_pred hHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhhhhccC-CCCC
Q 025080 161 QQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239 (258)
Q Consensus 161 ~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~-D~~t 239 (258)
|++|+++|+++|+|+|||+|+|+|+|+|+++++++++++||+||++|++++++|++|+++++|++|+++++|+++ ||||
T Consensus 451 ~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t 530 (550)
T 3m00_A 451 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYT 530 (550)
T ss_dssp HHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----
T ss_pred HHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999988999999999999999999999998 9999
Q ss_pred Cc-HHHHHHHHhhcccccCC
Q 025080 240 HS-HAIKDQIAAVLRDPVTI 258 (258)
Q Consensus 240 ~~-~~~~~~i~~l~~~p~~~ 258 (258)
.| .+||++|++||++||++
T Consensus 531 ~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 531 HPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp CCHHHHHHHHHHHHTCCCCC
T ss_pred CccHHHHHHHHHHhhCCCCC
Confidence 99 68999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1.8e-78 Score=575.23 Aligned_cols=257 Identities=31% Similarity=0.542 Sum_probs=249.3
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|++.++.++||+++++|++++|
T Consensus 294 ~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w 373 (555)
T 3n0f_A 294 VAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAW 373 (555)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+++++||++||+|+.+||+||+||||++|.+|+|+++++++++++||+.+|+++++|+.++|+++++++.++||+|||+|
T Consensus 374 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S 453 (555)
T 3n0f_A 374 ADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLAS 453 (555)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhhhhccCCCCCC
Q 025080 161 QQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH 240 (258)
Q Consensus 161 ~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~ 240 (258)
|++|+++|+++|+|+|||+|+|+|+|+|+++++++++++||+||++|++++++|++|+++++|+||+++++|+++||||.
T Consensus 454 ~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~ 533 (555)
T 3n0f_A 454 ASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTS 533 (555)
T ss_dssp HHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CC
T ss_pred hhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred c-HHHHHHHHhhcccccC
Q 025080 241 S-HAIKDQIAAVLRDPVT 257 (258)
Q Consensus 241 ~-~~~~~~i~~l~~~p~~ 257 (258)
| .+||++|++||++||+
T Consensus 534 ~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 534 PDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHTTSCCC
T ss_pred ccHHHHHHHHHHHhcCCC
Confidence 9 6899999999999986
No 4
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.9e-74 Score=549.76 Aligned_cols=257 Identities=29% Similarity=0.553 Sum_probs=240.4
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|+|++||+||+|||++|++.||+||+|||.+++++||+|||+||.+++++++|++.++.+.++++++.|++++|
T Consensus 291 ~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w 370 (549)
T 1n1b_A 291 AATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSV 370 (549)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhh-hhhccCchhHHHHHHhHHHHhcCcc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEA-FEWISKDPKISTASSVICRLRNDIV 159 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~-~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
++++++|++||+|+.+||+||+||||++|.+|+|+++++++++++||+.+|+++ ++|+.++|+++++++.++||+|||+
T Consensus 371 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~ 450 (549)
T 1n1b_A 371 VDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLG 450 (549)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred chHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhhhhccCCCCC
Q 025080 160 SQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYT 239 (258)
Q Consensus 160 S~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t 239 (258)
||++|+++|+++|+|.|||+|||+|+|+|+++++++++++||+||+++++++++|++|+++++|++|+++++|+++||||
T Consensus 451 S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t 530 (549)
T 1n1b_A 451 TSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFG 530 (549)
T ss_dssp ---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC-
T ss_pred hhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred Cc-HHHHHHHHhhcccccC
Q 025080 240 HS-HAIKDQIAAVLRDPVT 257 (258)
Q Consensus 240 ~~-~~~~~~i~~l~~~p~~ 257 (258)
+| .+||++|++||++||+
T Consensus 531 ~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 531 VQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp ---CHHHHHHHHHHTSCCC
T ss_pred CCcHHHHHHHHHHhcCCCC
Confidence 99 6899999999999986
No 5
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=6.4e-74 Score=546.28 Aligned_cols=257 Identities=28% Similarity=0.495 Sum_probs=251.8
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|+|++||+||+|||++|++.||+||+|||.+++++||+|||+||.+++++++|++.++.+.|++++++|++++|
T Consensus 285 ~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w 364 (543)
T 2ong_A 285 MGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSW 364 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
++++++|++||+|+.+||+||+||||++|.+|+|+++++++++++||..+|+++++|+.++|+++++++.++||+|||+|
T Consensus 365 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S 444 (543)
T 2ong_A 365 VDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGT 444 (543)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCcHHHHHHHHhhhhhhhhhhccCCCCC
Q 025080 161 QQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEF-LKPTAFPVALIERPFNIARVIEFLNKKGDWYT 239 (258)
Q Consensus 161 ~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~-l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t 239 (258)
|++|+++|+++|+|+|||+|+|+|+|+|+++++++++++||+||+++ ++++++|++|+++++|++|+++++|+++||||
T Consensus 445 ~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t 524 (543)
T 2ong_A 445 SVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHG 524 (543)
T ss_dssp SHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTS
T ss_pred hhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCC
Confidence 99999999999999999999999999999999999999999999999 99888999999999999999999999999999
Q ss_pred Cc-HHHHHHHHhhcccccC
Q 025080 240 HS-HAIKDQIAAVLRDPVT 257 (258)
Q Consensus 240 ~~-~~~~~~i~~l~~~p~~ 257 (258)
.| .++|++|++||++||+
T Consensus 525 ~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 525 TQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp SSCTTHHHHHHHHHTSCC-
T ss_pred CccHHHHHHHHHHhccCCC
Confidence 99 7899999999999986
No 6
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=2e-73 Score=557.85 Aligned_cols=258 Identities=27% Similarity=0.451 Sum_probs=243.1
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+++++++|++.++.+++|+++++|++++|
T Consensus 496 ~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw 575 (764)
T 3p5p_A 496 FTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPW 575 (764)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998877779999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
++++++|++||+|+++||+||+||||++|.+|+|+++++..+++++|+.+|+++++|+..+|+|+++++.++||+|||+|
T Consensus 576 ~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S 655 (764)
T 3p5p_A 576 ELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKT 655 (764)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999976669999999999999999999
Q ss_pred hHHHhhcCCcchhHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCcHHHHHHHHhhhhhhhhhhccCCCC
Q 025080 161 QQFEQKRGHIASGVECYIKQY-GVSAEEVVTVFTEEVENAWKDMNEEFLK-PTAFPVALIERPFNIARVIEFLNKKGDWY 238 (258)
Q Consensus 161 ~~kE~~~g~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~~~k~ln~~~l~-~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~ 238 (258)
|++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+||+++++ ++.+|++|+++++|++|+++++|+++|||
T Consensus 656 ~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~ 735 (764)
T 3p5p_A 656 YQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGY 735 (764)
T ss_dssp HHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHTHHHHHHHSCC----
T ss_pred hHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999 7999999999999999999999999998 78899999999999999999999999999
Q ss_pred CCc-HHHHHHHHhhcccccCC
Q 025080 239 THS-HAIKDQIAAVLRDPVTI 258 (258)
Q Consensus 239 t~~-~~~~~~i~~l~~~p~~~ 258 (258)
|.| .+||++|++||++||+.
T Consensus 736 t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 736 GIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp ---CCCHHHHHHHHHTCCCCC
T ss_pred CCCcHHHHHHHHHHHhcCCcc
Confidence 998 57999999999999974
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=2.7e-73 Score=560.20 Aligned_cols=258 Identities=32% Similarity=0.561 Sum_probs=244.1
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|++.++.++||++++.|++++|
T Consensus 555 ~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw 634 (817)
T 3sdr_A 555 FTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGW 634 (817)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchh-hHHHHHhhcCCCCChhhhhhcc--CchhHHHHHHhHHHHhcC
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFM-LATNSFLGMCDVANKEAFEWIS--KDPKISTASSVICRLRND 157 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~-~~~~~~~~~g~~l~~e~~~~~~--~~~~l~~~~~~i~rL~ND 157 (258)
++++++|++||+|+++||+||+||||++|.+|+|+++ ++..+++++|+.+|+++++|+. +.|+|+++++.++||+||
T Consensus 635 ~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~ND 714 (817)
T 3sdr_A 635 EDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADD 714 (817)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999 8888889999999999999975 456999999999999999
Q ss_pred ccchHHHhhcCCcchhHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhhhhccCC
Q 025080 158 IVSQQFEQKRGHIASGVECYIKQY-GVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGD 236 (258)
Q Consensus 158 i~S~~kE~~~g~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D 236 (258)
|+||++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+||++|++++.+|++|+++++|++|+++++|+++|
T Consensus 715 i~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D 794 (817)
T 3sdr_A 715 TKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGD 794 (817)
T ss_dssp HHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTCSCC
T ss_pred chHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999 7999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCc-HHHHHHHHhhcccccCC
Q 025080 237 WYTHS-HAIKDQIAAVLRDPVTI 258 (258)
Q Consensus 237 ~~t~~-~~~~~~i~~l~~~p~~~ 258 (258)
|||.| .+||++|++||++||++
T Consensus 795 g~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 795 GFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp SSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CCCCchHHHHHHHHHHhcCCCCC
Confidence 99998 78999999999999985
No 8
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=5.9e-73 Score=555.89 Aligned_cols=256 Identities=30% Similarity=0.484 Sum_probs=244.6
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|++.++.+++|+++++|++++|
T Consensus 527 ~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw 606 (785)
T 3s9v_A 527 YTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVW 606 (785)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998877779999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
++++++|++||+|+++||+||+||||++|.+|+|++++++.+++++|+.+|+++++|+..+|+|+++++.++||+|||+|
T Consensus 607 ~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S 686 (785)
T 3s9v_A 607 KVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKT 686 (785)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999976669999999999999999999
Q ss_pred hHHHhhcCCcchhHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhhhhccCCCCC
Q 025080 161 QQFEQKRGHIASGVECYIKQY-GVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYT 239 (258)
Q Consensus 161 ~~kE~~~g~~~n~V~~ym~e~-g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t 239 (258)
|++|+++|+++|+|+|||+|| |+|+|+|+++++++|+++||+||+++++++ +|++|+++++|++|++++||+++||||
T Consensus 687 ~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t 765 (785)
T 3s9v_A 687 YQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIYKRLVFETARIMQLFYMQGDGLT 765 (785)
T ss_dssp HHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTCCCC---
T ss_pred hhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999 999999999999999999999999999977 999999999999999999999999999
Q ss_pred Cc-H-HHHHHHHhhcccccC
Q 025080 240 HS-H-AIKDQIAAVLRDPVT 257 (258)
Q Consensus 240 ~~-~-~~~~~i~~l~~~p~~ 257 (258)
.| . +||++|++||++||.
T Consensus 766 ~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 766 LSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp -CHHHHHHHHHHHHHTSCCC
T ss_pred CCChHHHHHHHHHHhcccCC
Confidence 99 4 699999999999983
No 9
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2.5e-73 Score=543.68 Aligned_cols=256 Identities=30% Similarity=0.528 Sum_probs=234.8
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|+|++||+||+|||++|++.||+||+|||.+++++||+|||+||.+++++++|++.++.+.++++++.|++++|
T Consensus 312 ~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w 391 (569)
T 2j5c_A 312 LTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVW 391 (569)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
++++++|++||+|+.+||+||+||||++|.+|+|++++++++++++|+.+|+++++|+.++|+++++++.++||+|||+|
T Consensus 392 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S 471 (569)
T 2j5c_A 392 VGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGT 471 (569)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhhhhccC-CCCC
Q 025080 161 QQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT 239 (258)
Q Consensus 161 ~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~-D~~t 239 (258)
|++|+++|+++|+|+|||+|+|+|+|+|+++++++++++||+||++|++ +++|++|+++++|++|+++++|+++ ||||
T Consensus 472 ~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t 550 (569)
T 2j5c_A 472 SLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFG 550 (569)
T ss_dssp ----------CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC
T ss_pred hhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999 8999999999999999999999999 9999
Q ss_pred Cc-HHHHHHHHhhcccccC
Q 025080 240 HS-HAIKDQIAAVLRDPVT 257 (258)
Q Consensus 240 ~~-~~~~~~i~~l~~~p~~ 257 (258)
.| .++|++|++||++||+
T Consensus 551 ~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 551 MQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp -CCCHHHHHHHHHHTSCCC
T ss_pred CchHHHHHHHHHHhccCCC
Confidence 99 7899999999999996
No 10
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=8.5e-47 Score=340.67 Aligned_cols=206 Identities=16% Similarity=0.068 Sum_probs=184.2
Q ss_pred CceeeeehheeccccCCC--CCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 025080 1 MTKTIYTASIIDDTFDAY--GFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKE 78 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~--gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~ 78 (258)
+||+++|+|++||+||.+ ||++|++.|+++++||+.+ .+|+++++++.++.++++++++.+. +...+++++
T Consensus 69 ~ak~~~~~~~~DD~~D~~~~~~~ee~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~----~~~~~~~~~ 141 (337)
T 1ps1_A 69 GVDLMSWFFLFDDLFDGPRGENPEDTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMT----PAWCARSAR 141 (337)
T ss_dssp HHHHHHHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSC----HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCC----HHHHHHHHH
Confidence 479999999999999998 6999999999999999864 5899999999999999999987643 234679999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC-ChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcC
Q 025080 79 KMQELVQMYFVQAKWFSEGYVP-TWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRND 157 (258)
Q Consensus 79 ~~~~~~~~~~~Ea~w~~~~~~P-s~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 157 (258)
.|+.|++++++||+|+.+|++| |++||+++|++|+|+.++++++++++|..+|++++++ +.++++.++++.++||+||
T Consensus 142 ~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~ND 220 (337)
T 1ps1_A 142 HWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLND 220 (337)
T ss_dssp HHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999988877 5667899999999999999
Q ss_pred ccchHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHH
Q 025080 158 IVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVAL 217 (258)
Q Consensus 158 i~S~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~ 217 (258)
|+||+||+++|+++|+|.|||+++|+|+|+|++++.++++++||+||++.- .+|..+
T Consensus 221 l~S~~kE~~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~~~~---~lp~~~ 277 (337)
T 1ps1_A 221 IASLEKEEARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYLLLES---CLPKVG 277 (337)
T ss_dssp HHTHHHHHHTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HhhHHHHHhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhhh
Confidence 999999999999999999999999999999999999999999999999883 355443
No 11
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=7.7e-45 Score=322.60 Aligned_cols=192 Identities=14% Similarity=0.099 Sum_probs=177.9
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|+|++||+||. |+.+|++.|++++.||+.+ +.+|++++++++++++++++++..++ .+.++.|
T Consensus 65 ~~k~~~~~~~~DD~~D~-~~~~e~~~~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~ 133 (300)
T 1di1_A 65 ACRLLTVLFLIDDVLEH-MSFADGEAYNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVL 133 (300)
T ss_dssp HHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHH
Confidence 47999999999999999 7899999999999999875 57899999999999999999998762 2466779
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+.+++++. |++|+..|++||++||+++|++|+|+.++++++++++|..+|+++++ ..+++.++++.++||+|||+|
T Consensus 134 ~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S 209 (300)
T 1di1_A 134 EPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYS 209 (300)
T ss_dssp HHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHH
Confidence 99999997 89999999999999999999999999999999999999999999998 359999999999999999999
Q ss_pred hHHHhhcCC--------cchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 025080 161 QQFEQKRGH--------IASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEF 207 (258)
Q Consensus 161 ~~kE~~~g~--------~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~ 207 (258)
|+||+++|+ ++|+|.|||+++|+|+|+|+++++++++++||++|+..
T Consensus 210 ~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 210 YDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp TTTTCCC----------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccccccchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 77999999999999999999999999999999999876
No 12
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=6.2e-44 Score=327.74 Aligned_cols=201 Identities=11% Similarity=0.013 Sum_probs=183.9
Q ss_pred CceeeeehheeccccCC--CC-CHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchH
Q 025080 1 MTKTIYTASIIDDTFDA--YG-FFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGK 77 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~--~g-t~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~ 77 (258)
+||+++|+|++||+||. +| ++++++.|++++.++-.. ...+|++++++++++.+++++++..+.+. ...+++
T Consensus 109 ~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~~----~~~r~~ 183 (382)
T 3kb9_A 109 IADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPAT----WNARFA 183 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCHH----HHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHhcC-CCCCCCCCChHHHHHHHHHHHHHccCCHH----HHHHHH
Confidence 37899999999999996 56 999999999999986322 22368899999999999999998765442 367999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcC
Q 025080 78 EKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRND 157 (258)
Q Consensus 78 ~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 157 (258)
++|++++++|++||+|+.+|++||++||+++|++|+|+.++++++++++|..+|++++++ +.+++|+++++.++||+||
T Consensus 184 ~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~ND 262 (382)
T 3kb9_A 184 RHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYND 262 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 6778899999999999999
Q ss_pred ccchHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 025080 158 IVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEF 207 (258)
Q Consensus 158 i~S~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~ 207 (258)
|+||+||+++|+++|+|.|||+++|+|+|+|+++++++++++||+||+..
T Consensus 263 i~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 263 LCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999843
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=4.9e-43 Score=313.94 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=174.2
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM 80 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (258)
+||+++|+|++||+||. |+++|++.|++++.||+.+ +.+|+++++++++++++++++++.. + .+.++.|
T Consensus 79 ~ak~~~~~~~~DD~~D~-~~~~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~ 147 (320)
T 3bny_A 79 ACRLLTVLFLIDDLLEY-MSFEEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEIL 147 (320)
T ss_dssp HHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTH
T ss_pred HHHHHHHHHHhhccccc-CChhhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHH
Confidence 48999999999999999 8899999999999999865 5689999999999999999999875 2 1345556
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
+.++ ++++|++|+.+|++||++||+++|++|+|+.++++++++++|..+|+++++. .+++.++++.++||+|||+|
T Consensus 148 ~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S 223 (320)
T 3bny_A 148 EPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYS 223 (320)
T ss_dssp HHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccch
Confidence 6677 5999999999999999999999999999999999999999999999999984 69999999999999999999
Q ss_pred hHHHhhcCC--------cchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 025080 161 QQFEQKRGH--------IASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEF 207 (258)
Q Consensus 161 ~~kE~~~g~--------~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~ 207 (258)
|+||+++|+ ++|+|.|||+++|+|+|+|++++.+++++.|+++|+..
T Consensus 224 ~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 224 YEKELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHCC-----------CCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhcccccccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 78999999999999999999999999999999999865
No 14
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=1.2e-34 Score=269.14 Aligned_cols=199 Identities=12% Similarity=0.037 Sum_probs=159.1
Q ss_pred ceeeeehheeccc-cCCCC-CHHHH-HHHHHHHHhccCcc---cCCCChh-----HHHHHHHHHHHHHHHHHHHHHhCCC
Q 025080 2 TKTIYTASIIDDT-FDAYG-FFEEL-KLLAEAVQRWDIGA---MDILPEY-----MKVLYKALLDTFNEIEQDLAKEGRS 70 (258)
Q Consensus 2 aK~~~~~~~~DD~-~D~~g-t~eel-~~~~~ai~rWd~~~---~~~lp~~-----~k~~~~al~~~~~e~~~~~~~~~~~ 70 (258)
+|++.|+|++||. +|..| +.+.+ ..+..+ .+.-... .+.-|.. -.++.++++++++++.+.+.+.
T Consensus 180 ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a-~~~~d~l~~~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~~--- 255 (433)
T 3v1v_A 180 TRLMVAENAVDDCYCEDHGGSPVGLGGRLLLA-HTAIDHFHSTAEYTPTWQASLAADAPRRAYDSAMGYFVRAATPS--- 255 (433)
T ss_dssp HHHHHHHHHHHHHHTC----CCTTHHHHHHHH-HTTTSCCCCCTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCHH---
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhHHHHHHH-HHHHHhhhcccCCCCccccccCCchHHHHHHHHHHHHHhhcCHH---
Confidence 6889999999999 59754 33321 111211 1221111 1101100 1256899999999998876553
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHh
Q 025080 71 SYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSV 150 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
...+++++|++|+++|++||+|+..|++||++||+++|+.| |+.++++++++++|..+|++++++ +..++|.++++.
T Consensus 256 -q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~ 332 (433)
T 3v1v_A 256 -QSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGN 332 (433)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999 777777888999999999999988 566789999999
Q ss_pred HHHHhcCccchHHHhhcC-CcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 025080 151 ICRLRNDIVSQQFEQKRG-HIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEF 207 (258)
Q Consensus 151 i~rL~NDi~S~~kE~~~g-~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~ 207 (258)
++||+|||+||+||+++| +++|+|.|||+++|+|+|+|++++.+++++.+++|.+..
T Consensus 333 i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 333 ATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999995 788999999999999999999999999999999887654
No 15
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.6e-34 Score=280.70 Aligned_cols=203 Identities=14% Similarity=0.135 Sum_probs=167.0
Q ss_pred CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCc---------ccCC---CChh--HHHHHHHHHHHHHHHHHHHHH
Q 025080 1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIG---------AMDI---LPEY--MKVLYKALLDTFNEIEQDLAK 66 (258)
Q Consensus 1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~---------~~~~---lp~~--~k~~~~al~~~~~e~~~~~~~ 66 (258)
+||++++++++||+||+|| |||++||+||+|||.+ +.+. +|+| ||+||.+|+++++|++.++.+
T Consensus 502 ~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k 579 (727)
T 3pya_A 502 WAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFM 579 (727)
T ss_dssp HHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999 9999999999999974 3333 3877 899999999999999999999
Q ss_pred hCCCCcccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHH
Q 025080 67 EGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKIST 146 (258)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~ 146 (258)
+||+++++|++++|.++++++++|++ + +| |. +++..+.+..|..+++ ++.+ +.+.+|.+
T Consensus 580 ~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E---------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ 638 (727)
T 3pya_A 580 SHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE---------GE-LMVKMIILMKNNDLTN-FFTH-THFVRLAE 638 (727)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH---------HH-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc---------ee-eeeeeeecCCCcchHh-hccC-hhHHHHHH
Confidence 89999999999999999999999997 2 33 11 3333333334888888 7776 67788999
Q ss_pred HHHhHHHHhcCccchHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcHHHHHHHHhh
Q 025080 147 ASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKP--TAFPVALIERPFNI 224 (258)
Q Consensus 147 ~~~~i~rL~NDi~S~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~--~~~p~~~~~~~~n~ 224 (258)
+++.++||+||+.+|++|+ .+++.+.|+..|++|++.++++ +.+|++| |+
T Consensus 639 ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf 690 (727)
T 3pya_A 639 IINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TF 690 (727)
T ss_dssp HHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HH
T ss_pred HHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cH
Confidence 9999999999999999977 5578999999999999999984 3799999 88
Q ss_pred hhhhhhhhccCCCCCCcHHHHHHHHhhcccccC
Q 025080 225 ARVIEFLNKKGDWYTHSHAIKDQIAAVLRDPVT 257 (258)
Q Consensus 225 ~R~~~~~Y~~~D~~t~~~~~~~~i~~l~~~p~~ 257 (258)
+++++.||.. ||+.|+ |+.||.+++++|+-
T Consensus 691 ~~V~ksFYy~--ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 691 LDVAKAFYYF--ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHHHHHHHH--HHHTTS-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHhh--hcCCHH-HHHHHHHHHcCccc
Confidence 8999999986 999988 99999999999984
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.78 E-value=1.7e-19 Score=164.22 Aligned_cols=183 Identities=13% Similarity=0.032 Sum_probs=142.8
Q ss_pred ceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHH
Q 025080 2 TKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQ 81 (258)
Q Consensus 2 aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
+++.+|+|++||++|..+ +++..|.+.+-+ .. -|+ .|+..++.+++.++.+.+ ++.+..++.++|.
T Consensus 90 ad~~~~~F~lDD~~d~~~--~~l~~~~~~ll~--G~----~~~--~Pl~~al~dl~~rl~~~~----~p~~~~rf~~s~~ 155 (374)
T 1yyq_A 90 SIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--GR----EQA--HPWWALVNEHFPNVLRHF----GPFCSLNLIRSTL 155 (374)
T ss_dssp HHHHHHHHHHTTCCSCSH--HHHTTHHHHHHH--TC----CCS--SHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccCcH--HHHHHHHHHHhc--CC----CCC--ChHHHHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 678899999999999754 778888887764 11 111 377788888888886553 3345678999999
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhh-h--ccCchhHHHHHHhHHHHhcCc
Q 025080 82 ELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFE-W--ISKDPKISTASSVICRLRNDI 158 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~-~--~~~~~~l~~~~~~i~rL~NDi 158 (258)
+|+.++..|+.. .+..|+.++|...++.++|+.-.+.. -.+|...+. . .+.+...+.....++.|+|||
T Consensus 156 ~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~~------~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDI 227 (374)
T 1yyq_A 156 DFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGA------SLWPKEQFNERSLFLEITSAIAQMENWMVWVNDL 227 (374)
T ss_dssp HHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHHH------TTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHHH------hhccccccchhhcchhHHHHHHHHHHHHHhhhhh
Confidence 999999999873 77789999999998888887543322 224444331 1 122345677778899999999
Q ss_pred cchHHHhh-cCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 025080 159 VSQQFEQK-RGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEE 206 (258)
Q Consensus 159 ~S~~kE~~-~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~ 206 (258)
.||.||.. .|+.+|+|.+++.++|+|.++|++++.+++..+..++...
T Consensus 228 lSf~KE~~~~Gd~~NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~~ 276 (374)
T 1yyq_A 228 MSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (374)
T ss_dssp HHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhccCCccchhhhehhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 4999999999999999999999999999999999888653
No 17
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=92.24 E-value=0.37 Score=41.92 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=76.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHh
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSV 150 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
.+..+.++...++.+-..+..|... .||.++|++.-..-+|.-+..++ ..+. --..+++..+.+ .++-+....
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~-~~ga~lag~~~~~~~~l---~~~g~~lGl 201 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISA-SIGAYTGGAEEELAERF---SHFGNALGT 201 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 3445566667778888877777543 48999999886555555433222 2221 012355444443 556778888
Q ss_pred HHHHhcCccchHHHh-----hcCCcchhHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcH-HHHHHHH
Q 025080 151 ICRLRNDIVSQQFEQ-----KRGHIASGVECYIKQYGV--SAEEVVTVFTEEVENAWKDMNEEFLKPTAFPV-ALIERPF 222 (258)
Q Consensus 151 i~rL~NDi~S~~kE~-----~~g~~~n~V~~ym~e~g~--s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~-~~~~~~~ 222 (258)
..-+.||+..+.... ..|.. +...+|..+.+- ..+.|.+.+.+.++++.+.+. .+|. +.++...
T Consensus 202 aFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~~L~ 273 (295)
T 3ipi_A 202 AYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARDKLF 273 (295)
T ss_dssp HHHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHHHH
Confidence 999999998886433 23333 666666654421 145555566666666665554 2453 3444444
Q ss_pred hhhh
Q 025080 223 NIAR 226 (258)
Q Consensus 223 n~~R 226 (258)
++++
T Consensus 274 ~l~~ 277 (295)
T 3ipi_A 274 QITD 277 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 18
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=91.42 E-value=0.89 Score=40.65 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=66.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVI 151 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
.+..+.+++..++.+...+..|.... ||.++|++.-..-+|.-+..++-.-++--..+++..+.+ .++-......
T Consensus 161 ~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l---~~~g~~lG~a 235 (360)
T 3lmd_A 161 TVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDAL---KNFGAAVGMI 235 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 46677788889999999999987655 999999998665555554332211111112355544443 4567788888
Q ss_pred HHHhcCccchHHH-----------hhcCCcchhHHHHHhhC
Q 025080 152 CRLRNDIVSQQFE-----------QKRGHIASGVECYIKQY 181 (258)
Q Consensus 152 ~rL~NDi~S~~kE-----------~~~g~~~n~V~~ym~e~ 181 (258)
.-+.||+..+.-. ...|.. ++..+|..++
T Consensus 236 FQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 236 FQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8899999877532 233444 6666665444
No 19
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=89.89 E-value=4.8 Score=34.48 Aligned_cols=169 Identities=17% Similarity=0.134 Sum_probs=89.8
Q ss_pred heeccccCCCCCHHHHHHHHHHHHh-ccCccc--CCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHHHH
Q 025080 9 SIIDDTFDAYGFFEELKLLAEAVQR-WDIGAM--DILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQ 85 (258)
Q Consensus 9 ~~~DD~~D~~gt~eel~~~~~ai~r-Wd~~~~--~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (258)
-.+||+=|....+.+|+.+.+.+++ .+.... ...|. .|+..+|.++..+. + --++.+.+++.
T Consensus 51 R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~-----l~~~~~~~li~ 115 (293)
T 3acx_A 51 RKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------N-----IAFQSFYNLID 115 (293)
T ss_dssp HHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------C-----CCHHHHHHHHH
T ss_pred HHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------C-----CCHHHHHHHHH
Confidence 3579999976554447777666664 222110 00022 36777777665442 1 12456777888
Q ss_pred HHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccchHHHh
Q 025080 86 MYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQ 165 (258)
Q Consensus 86 ~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~kE~ 165 (258)
++.. +......+|++|+..+-..+.|.--..++-.++... .++.. ......+...-+.|=+.......
T Consensus 116 g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~-------~~A~~lG~AlQltNilRDv~eD~ 183 (293)
T 3acx_A 116 TVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTY-------DVARRLGESLQLINILRDVGEDF 183 (293)
T ss_dssp HHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHH-------HHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8743 334456789888888877777765554444443221 12211 12333344444444333334455
Q ss_pred hcCCcchhHHHHHhhCCCCHHHH---------HHHHHHHHHHHHHHHHH
Q 025080 166 KRGHIASGVECYIKQYGVSAEEV---------VTVFTEEVENAWKDMNE 205 (258)
Q Consensus 166 ~~g~~~n~V~~ym~e~g~s~eeA---------~~~i~~~i~~~~k~ln~ 205 (258)
++|.+- .=.--|.++|+|.++- .+-+..++..+...+.+
T Consensus 184 ~~gR~Y-LP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~ 231 (293)
T 3acx_A 184 ENERIY-FSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRD 231 (293)
T ss_dssp HTTCCC-SCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcEE-eCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567541 1112456789998762 23345555555555543
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=88.01 E-value=3.3 Score=36.42 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=57.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHh
Q 025080 71 SYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSV 150 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
..+..+.+.+..++.+-..+-.|.. +..||.++|++.-..-+|.-+..++-.-++--..+++..+.+ ..+-...+.
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~ 208 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFA---RLLGEYIGI 208 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 3556677888888999888888864 345899999998766666554332211111112354444433 556778888
Q ss_pred HHHHhcCccchH
Q 025080 151 ICRLRNDIVSQQ 162 (258)
Q Consensus 151 i~rL~NDi~S~~ 162 (258)
..-+.||+..+.
T Consensus 209 aFQi~DD~ld~~ 220 (334)
T 3rmg_A 209 CFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHhccCC
Confidence 899999998875
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=86.50 E-value=5.5 Score=35.19 Aligned_cols=88 Identities=9% Similarity=-0.038 Sum_probs=57.0
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHH
Q 025080 71 SYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASS 149 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
..+..+.++...++.+-..+..|.. +..||.++|++.-..-+|.-+..++ ..+. --..+++..+.+ .++-+..+
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG 225 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAAS-EAGAVSAGVDVAKSEAL---RDYGLNLG 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHH
Confidence 3455677778888888888888754 3458999999986666665443222 2221 112355544443 55677888
Q ss_pred hHHHHhcCccchHH
Q 025080 150 VICRLRNDIVSQQF 163 (258)
Q Consensus 150 ~i~rL~NDi~S~~k 163 (258)
...-+.||+..+.-
T Consensus 226 ~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 226 LAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhccC
Confidence 89999999988753
No 22
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=86.38 E-value=1.4 Score=38.24 Aligned_cols=110 Identities=12% Similarity=0.008 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHH--HhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNS--FLGMCDVANKEAFEWISKDPKISTASSVICRLRNDI 158 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~--~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
..++.+...+-.|...+..||.++|.+.-..-+|.-+..++. .+..| .+++ . ..++-.......-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~---~---l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG---P---LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH---H---HHHHHHHHHHHHHHHHHH
Confidence 457778888888876677899999999754444443322211 11112 2333 1 245677888899999999
Q ss_pred cchHHHh-----------hcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 159 VSQQFEQ-----------KRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 159 ~S~~kE~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
..+.-+. ..|.. +...++ ..+.|.+.+.+.++++.+.+..
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKA-TFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------C-CHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9885431 22322 455443 3567888899999999877763
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=86.28 E-value=8.7 Score=33.82 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=56.3
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHh
Q 025080 71 SYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSV 150 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
..+..+.+....++.+-..+-.|.. +..||.++|++.-..-+|.-+..++-.-++--..+++..+.+ .++-...+.
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~ 214 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQAL---FDYGDALGI 214 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 3455677778888899988888864 346899999988665555544322211111112344444433 456778888
Q ss_pred HHHHhcCccchH
Q 025080 151 ICRLRNDIVSQQ 162 (258)
Q Consensus 151 i~rL~NDi~S~~ 162 (258)
..-+.||+..+.
T Consensus 215 aFQI~DD~ld~~ 226 (341)
T 3mzv_A 215 AFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 888999988774
No 24
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=86.07 E-value=1.8 Score=37.62 Aligned_cols=112 Identities=7% Similarity=0.041 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHhHHHHhcCcc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSVICRLRNDIV 159 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
..++.+...+..|... .+|.++|++.-..-+|.-+..++ ..+. --..+++..+.+ .++-.......-+.||+.
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG~aFQI~DDil 221 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAV-MSAADIANVDDTTKEHL---ESYSYHLGMMFQIKDDLL 221 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHTCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4566777777777543 78999999986665555443222 2221 011455555443 557788889999999999
Q ss_pred chHHHh-----------hcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 160 SQQFEQ-----------KRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 160 S~~kE~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
.+.-.. ..|.. +...++- .+.|.+.+.+.++++.+.+..
T Consensus 222 D~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 222 DCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 885432 22332 4554443 578888888999988877764
No 25
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=85.80 E-value=4 Score=35.81 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc--CCCCChhhhhhccCchhHHHHHHhHHHHhcCc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM--CDVANKEAFEWISKDPKISTASSVICRLRNDI 158 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
..++.+...+-.|.. ..||.++|...-..-+|.-+..+ +..|. +...+++..+.+ .++-...+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 346677777777754 37899999998544444433322 22221 211455544443 55677888888899999
Q ss_pred cchHHH-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 025080 159 VSQQFE-----------QKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMN 204 (258)
Q Consensus 159 ~S~~kE-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
..+.-+ .+.|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 877422 233333 555554 478888889998888886654
No 26
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=85.63 E-value=2.6 Score=36.58 Aligned_cols=111 Identities=9% Similarity=0.050 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 82 ELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
.++.+...+-.|. +..||.++|.+.-..-+|.-+..+ +..+. --..+++..+.+ .++-.......-+.||+..
T Consensus 157 ~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~~-~~~ga~laga~~~~~~~l---~~~g~~lGlaFQI~DDilD 230 (302)
T 3p8l_A 157 GMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGALIEFA-LIAGGVLANQTEEVIGLL---TQFAHHYGLAFQIRDDLLD 230 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHHHHHH-HHHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 4566666666664 347899999987433334333222 22221 012355444443 5567788888899999988
Q ss_pred hHHH-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 161 QQFE-----------QKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 161 ~~kE-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
+.-+ ...|.. +...++ ..+.|.+.+.+.++++.+.++.
T Consensus 231 ~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 231 ATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp TTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7422 233333 444443 5788999999999999988775
No 27
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=84.97 E-value=6.2 Score=33.85 Aligned_cols=120 Identities=8% Similarity=-0.039 Sum_probs=78.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHH--hhcCCCCChhhhhhccCchhHHHHHH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSF--LGMCDVANKEAFEWISKDPKISTASS 149 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
.+..+.++...++.+...+..|......||.++|++.-..-+|.-+..++.. +..| .+++ . ..++-....
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~---~---l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT---X---MXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh---H---HHHHHHHHH
Confidence 4556667778889999999998765547899999998665555443322211 1112 2333 1 245677888
Q ss_pred hHHHHhcCccchHHHh-hcCC-------cchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 150 VICRLRNDIVSQQFEQ-KRGH-------IASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 150 ~i~rL~NDi~S~~kE~-~~g~-------~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
....+.||+..+.-.. ..|+ -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999986542 2333 12333333 3678899999999999988875
No 28
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=84.88 E-value=18 Score=30.97 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=77.0
Q ss_pred heeccccCCCCC--HHHHHHHHHHHHh-ccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHHHH
Q 025080 9 SIIDDTFDAYGF--FEELKLLAEAVQR-WDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQ 85 (258)
Q Consensus 9 ~~~DD~~D~~gt--~eel~~~~~ai~r-Wd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (258)
=.+||+-|.... ...|+.+-+.+++ .... |. .|++.+|.++..+.. --++.+.+++.
T Consensus 52 R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~--~pv~~al~~~~~~~~-------------l~~~~~~~li~ 111 (294)
T 4hd1_A 52 RGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----AT--TPAFRALQFTIATCN-------------LPMEPFLRLIE 111 (294)
T ss_dssp HHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CC--SHHHHHHHHHHHHHT-------------CCSHHHHHHHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CC--CHHHHHHHHHHHHcC-------------CCHHHHHHHHH
Confidence 357999986432 3455656665554 2221 22 367777777765542 11244667777
Q ss_pred HHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccchHHHh
Q 025080 86 MYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQ 165 (258)
Q Consensus 86 ~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~kE~ 165 (258)
++..... ....+|++|+..+...+.|.--.+++..+ |.. +++... .-...+...-|.|=+.......
T Consensus 112 g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~-~~~~~~-------~A~~lG~AlQltNilRDv~eD~ 178 (294)
T 4hd1_A 112 ANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL-DDERAR-------LSDATCTALQVANHMQDIDRDL 178 (294)
T ss_dssp HHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC-SHHHHH-------HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC-CHHHHH-------HHHHHHHHHHHHHHHHhchhhh
Confidence 8754433 44578888877777666665444333333 322 222221 1223333344444334444555
Q ss_pred hcCCc--chhHHHHHhhCCCCHHH
Q 025080 166 KRGHI--ASGVECYIKQYGVSAEE 187 (258)
Q Consensus 166 ~~g~~--~n~V~~ym~e~g~s~ee 187 (258)
++|.+ +. -.|.++|+|.++
T Consensus 179 ~~gR~YlP~---~~l~~~gv~~~d 199 (294)
T 4hd1_A 179 ALGRIYVPR---ADLEQFGATLDD 199 (294)
T ss_dssp HTTCBCSCH---HHHHTTTCCHHH
T ss_pred ccCceeCCH---HHHHHcCCCHHH
Confidence 66654 33 356788999876
No 29
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=83.68 E-value=2.5 Score=36.77 Aligned_cols=111 Identities=10% Similarity=0.038 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc--CCCCChhhhhhccCchhHHHHHHhHHHHhcCcc
Q 025080 82 ELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM--CDVANKEAFEWISKDPKISTASSVICRLRNDIV 159 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
.++.+...+-.|. +..||.++|++.-..-+|.-+..+ +..+. +...+++..+. ..++-.......-+.||+.
T Consensus 159 ~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDil 232 (302)
T 3p8r_A 159 GMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDIL 232 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5667777777776 457899999998544444433222 22221 11022333332 2456678888889999998
Q ss_pred chHHH-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 160 SQQFE-----------QKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 160 S~~kE-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
.+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.++.
T Consensus 233 D~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 233 DIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 87432 223333 555444 3678888889999988877763
No 30
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=83.35 E-value=3.6 Score=36.02 Aligned_cols=111 Identities=10% Similarity=0.101 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhh--cCCCCChhhhhhccCchhHHHHHHhHHHHhcCcc
Q 025080 82 ELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLG--MCDVANKEAFEWISKDPKISTASSVICRLRNDIV 159 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
.++.+...+-.|. +..||.++|...-..-+|.-+..+ +..| ++...+++..+.+ .++-+..+...-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566777777765 445899999988544444333222 2222 1222355444443 556778888899999998
Q ss_pred chHHH-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 160 SQQFE-----------QKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 160 S~~kE-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
.+.-+ .+.|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred hccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 87432 223333 555554 4688899999999999887764
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=82.74 E-value=3.3 Score=36.52 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHH--hhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSF--LGMCDVANKEAFEWISKDPKISTASSVICRLRNDI 158 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
..++.+...+..|... .+|.++|++.-..-+|.-+..++.. +..| .+++..+.+ .++-.......-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777778888654 6899999998766665543322211 1112 455544443 55677888899999999
Q ss_pred cchHHH-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 159 VSQQFE-----------QKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 159 ~S~~kE-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
..+.-+ ...|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 887532 222332 555443 3688899999999999877764
No 32
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=82.16 E-value=3.9 Score=35.49 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhh--cCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 83 LVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLG--MCDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 83 ~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~--~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
++.+...+-.|... .||.++|...-..-+|.-+..+ +..+ ++...+++..+.+ .++-.......-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 66677777777543 5899999988544444333222 2222 1221144444443 5567788889999999998
Q ss_pred hHHHh-----------hcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 025080 161 QQFEQ-----------KRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMN 204 (258)
Q Consensus 161 ~~kE~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
+.-+. +.|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKP-TYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHC------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHhCCCcccHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 86432 22222 555444 578889999999998887765
No 33
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=81.89 E-value=7.4 Score=34.26 Aligned_cols=88 Identities=9% Similarity=-0.023 Sum_probs=53.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVI 151 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
.+..+.+....++.+-..+..|.. +..+|.++|++.-..-+|.-+..++..-++--..+++..+.+ .++-......
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~a 229 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLA---FEYGRNLGLA 229 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHHH
Confidence 455666777788888777766543 235799999998555555443322211111112344444433 4566778888
Q ss_pred HHHhcCccchHH
Q 025080 152 CRLRNDIVSQQF 163 (258)
Q Consensus 152 ~rL~NDi~S~~k 163 (258)
.-+.||+..+--
T Consensus 230 FQi~DD~lD~~g 241 (348)
T 3apz_A 230 FQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHhhccC
Confidence 889999988753
No 34
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=80.96 E-value=4.8 Score=35.45 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=57.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVI 151 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
.+..+.++...++.+...+..|.... ..|.++|++.-..-+|.-+..++..-++--..+++..+.+ .++-......
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~a 213 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKAL---SSWGRNVGIA 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 45566777788899999999987543 4599999998766665554332221111012355544443 5577888889
Q ss_pred HHHhcCccchH
Q 025080 152 CRLRNDIVSQQ 162 (258)
Q Consensus 152 ~rL~NDi~S~~ 162 (258)
.-+.||+..+.
T Consensus 214 FQI~DD~lD~~ 224 (342)
T 1wy0_A 214 FQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999998875
No 35
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=80.92 E-value=4.9 Score=35.70 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=56.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHhh----------CCC-CCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccC
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFS----------EGY-VPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISK 140 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~----------~~~-~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~ 140 (258)
.+..+.++...++.+-..+..|.. .+. .||.++|++.-..-+|.-+..++-.-++--..+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l-- 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAA-- 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHH--
Confidence 355677778888999998888862 233 6799999998665555554322211111012344444443
Q ss_pred chhHHHHHHhHHHHhcCccchH
Q 025080 141 DPKISTASSVICRLRNDIVSQQ 162 (258)
Q Consensus 141 ~~~l~~~~~~i~rL~NDi~S~~ 162 (258)
.++-...+...-+.||+..+-
T Consensus 211 -~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 -WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhc
Confidence 456777888888889988774
No 36
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=80.40 E-value=13 Score=32.60 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=61.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHh
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSV 150 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
.+..+.+.+..++.+-+.+..|.. +..||.++|++.-..-+|.-+..+ +..+. --..+++..+.+ .++-...+.
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag~~~~~~~~l---~~~g~~lG~ 218 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAGAPQSVIDRT---RDIGIAIGC 218 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 355666777888888887777653 356899999987555555443322 22221 112355544443 456677778
Q ss_pred HHHHhcCccchHH-----------HhhcCCcchhHHHHHhh
Q 025080 151 ICRLRNDIVSQQF-----------EQKRGHIASGVECYIKQ 180 (258)
Q Consensus 151 i~rL~NDi~S~~k-----------E~~~g~~~n~V~~ym~e 180 (258)
..-+.||+..+.- ....|.. +...+|..+
T Consensus 219 aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 219 AYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 8888888877642 3445554 555555554
No 37
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=80.05 E-value=6.2 Score=34.37 Aligned_cols=112 Identities=8% Similarity=0.081 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCC-CChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 82 ELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDV-ANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~-l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
.++.+...+-.|... ..||.++|.+.-..-+|.-+..++....++.. .+++..+.+ .++-.......-+.||+..
T Consensus 159 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDilD 234 (313)
T 3lom_A 159 GMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYLD 234 (313)
T ss_dssp THHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 456777777777533 37899999988544444333222222222322 555555443 5577788888999999988
Q ss_pred hHHH-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 025080 161 QQFE-----------QKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMN 204 (258)
Q Consensus 161 ~~kE-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
+.-+ .+.|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 235 ~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 235 LYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7532 223332 444432 478899999999998887665
No 38
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=78.70 E-value=7.4 Score=33.84 Aligned_cols=111 Identities=6% Similarity=-0.021 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 82 ELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
.++.+...+-.|. +..+|.++|...-..-+|.-+..++ ..+. --..+++..+.+ .++-.......-+.||+..
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~ga~laga~~~~~~~l---~~~g~~lGlaFQI~DDiLD 229 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAV-QAGLILGQAPEAQWPAY---LQFADAFGLAFQIYDDILD 229 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCGGGHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 4556666666664 4468999999885444443332222 2221 012344444433 5567788888899999988
Q ss_pred hHH-----------HhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 161 QQF-----------EQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 161 ~~k-----------E~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
+.- +...|.. +...+| ..+.|.+..+++++++.+.+..
T Consensus 230 ~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 230 VVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 742 2233333 444443 4677888899999999887763
No 39
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=77.77 E-value=7.2 Score=34.18 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080 82 ELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSVICRLRNDIVS 160 (258)
Q Consensus 82 ~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 160 (258)
.++.+...+-.|... ..||.++|.+.-..-+|.-+..+ +..+. --..+++..+.+ .++-.......-+.||+..
T Consensus 181 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~laga~~~~~~~l---~~~g~~lGlAFQI~DDiLD 255 (324)
T 3uca_A 181 GMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGAVLAEASEGDIKKL---EGFGYKLGLAFQIKDDILD 255 (324)
T ss_dssp THHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 466777777777543 36899999998533334333222 22221 112355544443 5567788888899999987
Q ss_pred hHHH-----------hhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 161 QQFE-----------QKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 161 ~~kE-----------~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
+.-+ .+.|.. +...+| ..+.|.+.+.+.++++.+.+..
T Consensus 256 ~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 256 VVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7321 223332 444443 4688999999999999988764
No 40
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=73.42 E-value=9 Score=33.02 Aligned_cols=112 Identities=11% Similarity=0.092 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcC--CCCChhhhhhccCchhHHHHHHhHHHHhcCc
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMC--DVANKEAFEWISKDPKISTASSVICRLRNDI 158 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g--~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
..++.+...+..|... .+|.++|++.-..-+|.-+..+ +..+.- -..+++..+.+ .++-.......-+.||+
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~ag~~~~~~~~l---~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAGDKGRRALPVL---DKYAESIGLAFQVQDDI 225 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3556777777777543 7899999998655555443322 222210 01233333332 55677888899999999
Q ss_pred cchHHHh-----------hcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 159 VSQQFEQ-----------KRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 159 ~S~~kE~-----------~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
..+.-+. ..|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKS-TYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCC-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875321 22332 444443 3467888899999999888775
No 41
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=72.67 E-value=18 Score=31.06 Aligned_cols=134 Identities=14% Similarity=0.110 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHhHHHHhcCc
Q 025080 80 MQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSVICRLRNDI 158 (258)
Q Consensus 80 ~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
...++.+...+-.|. +..||.++|...-..-+|.-+..++ ..+. --..+++..+.+ .++-+......-+.||+
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~laga~~~~~~~l---~~~g~~lGlaFQI~DDi 217 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAAL-KMGCEICELNNEESNQI---YKLGLKLGLIFQINDDI 217 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344566666666664 3568999999885444444333222 2221 012344444433 55777888889999999
Q ss_pred cchHHH-hhcCCcc-------hhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhh
Q 025080 159 VSQQFE-QKRGHIA-------SGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEF 230 (258)
Q Consensus 159 ~S~~kE-~~~g~~~-------n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~ 230 (258)
..+.-. ...|+.. +.+.++ ..+.|.+..+++++++.+.++. +|....+..-.+++
T Consensus 218 LD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~-------~~~~~~~~l~~la~---- 280 (291)
T 3npk_A 218 IDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK-------LNEKLAQMIQNLII---- 280 (291)
T ss_dssp HHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT-------SCHHHHHHHHHHHH----
T ss_pred HhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH-------hchhHHHHHHHHHH----
Confidence 887533 2233321 333222 4677888888888888877763 55443444444443
Q ss_pred hhccCC
Q 025080 231 LNKKGD 236 (258)
Q Consensus 231 ~Y~~~D 236 (258)
+|-+|.
T Consensus 281 ~~~~~~ 286 (291)
T 3npk_A 281 QYLEGH 286 (291)
T ss_dssp HHC---
T ss_pred HHHhcc
Confidence 465553
No 42
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=71.68 E-value=7.4 Score=33.85 Aligned_cols=112 Identities=8% Similarity=0.119 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc--CCCCChhhh-hhccCchhHHHHHHhHHHHhcC
Q 025080 81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM--CDVANKEAF-EWISKDPKISTASSVICRLRND 157 (258)
Q Consensus 81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~--g~~l~~e~~-~~~~~~~~l~~~~~~i~rL~ND 157 (258)
..++.+...+-.|. +..||.++|...-..-+|.-+..++ ..+. + ..+++.. +.+ .++-.......-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~lga~la-ga~~~~~~~~l---~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASL-IMGLVAS-GIKDEELFKWL---QAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHH-CCCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHc-CCCHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45666777666765 5678999999885444444332222 2221 1 1344434 433 5577788889999999
Q ss_pred ccchHHH-hhcCCcchhHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHH
Q 025080 158 IVSQQFE-QKRGHIASGVECYIKQYGV------SAEEVVTVFTEEVENAWKDMN 204 (258)
Q Consensus 158 i~S~~kE-~~~g~~~n~V~~ym~e~g~------s~eeA~~~i~~~i~~~~k~ln 204 (258)
+..+.-+ ..-|+.... ++... ..+.|.+..+++++++.+.+.
T Consensus 232 iLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9888643 223433211 22223 357788888888888887776
No 43
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=71.55 E-value=12 Score=33.08 Aligned_cols=86 Identities=8% Similarity=0.015 Sum_probs=57.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHh
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSV 150 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
.+..+.+....++.+...+-.|... ..||.++|++.-..-+|..+..++ ..+. --..+++..+.+ ..+-+....
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLGGADERTADTL---EKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 3456777788899999888888654 378999999986655555543322 2221 112355544443 556778888
Q ss_pred HHHHhcCccchH
Q 025080 151 ICRLRNDIVSQQ 162 (258)
Q Consensus 151 i~rL~NDi~S~~ 162 (258)
..-+.||+..+-
T Consensus 219 aFQi~DD~ld~~ 230 (352)
T 3nf2_A 219 AFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 889999998774
No 44
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=71.45 E-value=14 Score=32.25 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=54.9
Q ss_pred cccchHHHHHHHHHHHHHHHHH-hhCCCCCChhhhhccccccccch-hhHHHH--HhhcCCCCChhhhhhccCchhHHHH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKW-FSEGYVPTWDEYYPVGLVSCGYF-MLATNS--FLGMCDVANKEAFEWISKDPKISTA 147 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w-~~~~~~Ps~eEYl~~~~~s~g~~-~~~~~~--~~~~g~~l~~e~~~~~~~~~~l~~~ 147 (258)
.+..+.+....++.+...+..| ......||.++|++.-..-+|.. +..++. .+..| .+++.. ..++-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag--~~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAG--KTPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcC--CCHHHH-----HHHHHHH
Confidence 4556777788899999999999 65435689999999866555544 322221 12223 232222 2456777
Q ss_pred HHhHHHHhcCccchH
Q 025080 148 SSVICRLRNDIVSQQ 162 (258)
Q Consensus 148 ~~~i~rL~NDi~S~~ 162 (258)
.....-+.||+..+.
T Consensus 204 lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCccc
Confidence 888888888888774
No 45
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=65.73 E-value=4.1 Score=35.10 Aligned_cols=108 Identities=12% Similarity=0.035 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhCC-CCCChhhhhccc-cccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHhHHHHhcCcc
Q 025080 83 LVQMYFVQAKWFSEG-YVPTWDEYYPVG-LVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSVICRLRNDIV 159 (258)
Q Consensus 83 ~~~~~~~Ea~w~~~~-~~Ps~eEYl~~~-~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 159 (258)
++.+...+..|...+ ..+|.++|...- ..|++. +..++ ..+. --..+++..+.+ .++-.......-+.||+.
T Consensus 162 ~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L-~~~a~-~~ga~lag~~~~~~~~l---~~~g~~lG~aFQI~DDiL 236 (293)
T 2j1p_A 162 LVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAAL-LEASA-VLGGIIGGGSDEEIERL---RKFARCIGLLFQVVDDIL 236 (293)
T ss_dssp HHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHH-HHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHH-HHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 455665555554321 346889999884 444443 32221 2221 012355544443 556778888999999999
Q ss_pred chHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025080 160 SQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNE 205 (258)
Q Consensus 160 S~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~ 205 (258)
.+..+. ..+...+| ..+.|.+.+.+.++++.+.+..
T Consensus 237 D~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 237 DVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 886443 23555444 4678888888888888877654
No 46
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=62.08 E-value=19 Score=32.00 Aligned_cols=88 Identities=8% Similarity=-0.018 Sum_probs=57.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCC----CCChhhhhccccccccch-hhHH--HHHhhcCCCCChhhhhhccCchhH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGY----VPTWDEYYPVGLVSCGYF-MLAT--NSFLGMCDVANKEAFEWISKDPKI 144 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~----~Ps~eEYl~~~~~s~g~~-~~~~--~~~~~~g~~l~~e~~~~~~~~~~l 144 (258)
.+..+.+.....+.+...+-.|...+. .+|.++|+..-..-+|.. +..+ +..+..| ..+++..+.+ .++
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag-~~~~~~~~~l---~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVG-IDSKEEHENA---KAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHT-CCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CccHHHHHHH---HHH
Confidence 455566777888889888888876543 679999999876655554 3211 1222223 1345544443 556
Q ss_pred HHHHHhHHHHhcCccchHH
Q 025080 145 STASSVICRLRNDIVSQQF 163 (258)
Q Consensus 145 ~~~~~~i~rL~NDi~S~~k 163 (258)
-...+...-+.||+..+.-
T Consensus 246 g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7888889999999988753
No 47
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=61.14 E-value=26 Score=30.06 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=57.1
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHh
Q 025080 71 SYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSV 150 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
..+..+.+.+..++.+...+-.|+.....||.++|++.-..-+|..+..++..-+.--..++ ...++-.....
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~-------~l~~~g~~lG~ 183 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE-------DLKPLLNTLGL 183 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS-------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChH-------HHHHHHHHHHH
Confidence 34556778888999999999999876668999999998766665443322221111111121 23556778888
Q ss_pred HHHHhcCccchH
Q 025080 151 ICRLRNDIVSQQ 162 (258)
Q Consensus 151 i~rL~NDi~S~~ 162 (258)
..-+.||+..+.
T Consensus 184 aFQi~DD~ld~~ 195 (301)
T 2q80_A 184 FFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc
Confidence 888899988764
No 48
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=55.54 E-value=20 Score=31.41 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=55.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCC--CCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEG--YVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASS 149 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~--~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
.+..+.+.+..++.+...+..|+... ..||.++|++.-..-+|.-+..++..-++--..++ .. ....++-...+
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~---~~l~~~g~~lG 207 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HG---HSLVPFINLLG 207 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HH---HHHHHHHHHHH
Confidence 44556677788889999999998765 57899999998766555443322211111011222 12 23456788889
Q ss_pred hHHHHhcCccchH
Q 025080 150 VICRLRNDIVSQQ 162 (258)
Q Consensus 150 ~i~rL~NDi~S~~ 162 (258)
...-+.||+..+-
T Consensus 208 ~aFQi~DD~ld~~ 220 (340)
T 2e8v_A 208 IIYQIRDDYLNLK 220 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998875
No 49
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=55.46 E-value=24 Score=30.19 Aligned_cols=117 Identities=10% Similarity=0.046 Sum_probs=66.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhh-cCCCCChhhhhhccCchhHHHHHHh
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLG-MCDVANKEAFEWISKDPKISTASSV 150 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~-~g~~l~~e~~~~~~~~~~l~~~~~~ 150 (258)
.+..+.+++..++.+...+..| .++|++.-..-+|.-+..++..-+ ++ .+++..+.+ .++-...+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~l---~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQM---LDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHHH---HHHHHHHHH
Confidence 3444555555666665544432 788988865555554432222111 23 455444443 456777888
Q ss_pred HHHHhcCccchHHH----hhcCCcchhHHHHHhhCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 025080 151 ICRLRNDIVSQQFE----QKRGHIASGVECYIKQYGVSAEEV-VTVFTEEVENAWKDMNE 205 (258)
Q Consensus 151 i~rL~NDi~S~~kE----~~~g~~~n~V~~ym~e~g~s~eeA-~~~i~~~i~~~~k~ln~ 205 (258)
..-+.||+..+.-+ ...| ..+...+| .+ .+.++| ...+.+.++++.+.+..
T Consensus 203 aFQi~DDilD~~~~~K~dl~~g-k~Tlp~l~-~~--~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGS-AKQLFKYY-RE--GKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTT-GGGGHHHH-TT--TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhcCCCChhhhcC-cccHHHHH-Hc--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999998887432 1222 24666666 32 245677 45577777777766653
No 50
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=55.46 E-value=20 Score=31.68 Aligned_cols=87 Identities=7% Similarity=-0.029 Sum_probs=55.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHh-----------hCCC----CCChhhhhccccccccch-hhHH--HHHhhcCCCCChh
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWF-----------SEGY----VPTWDEYYPVGLVSCGYF-MLAT--NSFLGMCDVANKE 133 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~-----------~~~~----~Ps~eEYl~~~~~s~g~~-~~~~--~~~~~~g~~l~~e 133 (258)
.+..+.+.....+.+...+..|. ..+. .+|.++|++.-..-+|.. +..+ +..+..| ..+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCHH
Confidence 45566777788888888888887 3223 489999999876655554 3222 2222223 12333
Q ss_pred hhhhccCchhHHHHHHhHHHHhcCccchH
Q 025080 134 AFEWISKDPKISTASSVICRLRNDIVSQQ 162 (258)
Q Consensus 134 ~~~~~~~~~~l~~~~~~i~rL~NDi~S~~ 162 (258)
..+.+ .++-...+...-+.||+..+.
T Consensus 231 ~~~~l---~~~g~~lG~aFQi~DD~lD~~ 256 (362)
T 1yhl_A 231 EMNLV---ERVAHLIGEYFQVQDDVMDCF 256 (362)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 33332 456778888899999998875
No 51
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=52.33 E-value=13 Score=25.24 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 025080 181 YGVSAEEVVTVFTEEVENAWKDM 203 (258)
Q Consensus 181 ~g~s~eeA~~~i~~~i~~~~k~l 203 (258)
||++.+||...+.+.+++++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999988643
No 52
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=51.19 E-value=19 Score=31.31 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=57.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVI 151 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i 151 (258)
.+..+.+....++.+...+-.|... ..||.++|++.-..-+|.-+..++..-++--..+++..+.+ .++-...+..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~a 206 (325)
T 3aqb_B 131 FHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHI---KQFGHCIGMS 206 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 4556667778888888888888653 35899999998766665554332222111112355544443 5567788888
Q ss_pred HHHhcCccchH
Q 025080 152 CRLRNDIVSQQ 162 (258)
Q Consensus 152 ~rL~NDi~S~~ 162 (258)
.-+.||+..+.
T Consensus 207 fQi~DD~ld~~ 217 (325)
T 3aqb_B 207 YQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 89999998875
No 53
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=49.20 E-value=9.2 Score=32.58 Aligned_cols=93 Identities=10% Similarity=-0.031 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhc-CCCCChhhhhhccCchhHHHHHHhHHHHhcCccch
Q 025080 83 LVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGM-CDVANKEAFEWISKDPKISTASSVICRLRNDIVSQ 161 (258)
Q Consensus 83 ~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~ 161 (258)
++.+...+..|.. ..||.++|...-..-+|.-+..++ ..|. --..+++..+.+ .++-.......-+.||+..
T Consensus 151 ~~~GQ~lDl~~~~--~~~t~~~y~~~i~~KTa~L~~~a~-~lGailaga~~~~~~~l---~~~G~~lG~aFQI~DD~~~- 223 (274)
T 3kra_B 151 MISGLHREEEIVD--GNTSLDFIEYVCKKKYGEMHACGA-ACGAILGGAAEEEIQKL---RNFGLYQGTLRGMMEMKNS- 223 (274)
T ss_dssp HHHHHHHHTTCCT--TSSCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHhHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHhhcc-
Confidence 4555555555543 378999999864444443333222 2221 112355544443 5567788888889998711
Q ss_pred HHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 025080 162 QFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMN 204 (258)
Q Consensus 162 ~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln 204 (258)
..|++.+.+.++.+.+.+.+.
T Consensus 224 ----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 224 ----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp ----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 225556667777777776654
No 54
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=48.76 E-value=33 Score=30.47 Aligned_cols=86 Identities=8% Similarity=0.023 Sum_probs=53.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCCh-hhhhccccccccch-hh--HHHHHhhcCCCCChhh--hhhccCchhHH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTW-DEYYPVGLVSCGYF-ML--ATNSFLGMCDVANKEA--FEWISKDPKIS 145 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~-eEYl~~~~~s~g~~-~~--~~~~~~~~g~~l~~e~--~~~~~~~~~l~ 145 (258)
.+..+.+.....+.+...+..|...+..+++ ++|++.-..-+|.. +. +.+..+..| .+++. .+. ..++-
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag--~~~~~~~~~~---l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSE--IQVSSAQLNL---IEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSC--CCCCCSSTTT---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcC--CChhHHHHHH---HHHHH
Confidence 4556777778888888888888766534445 99998865555544 22 122222223 23332 222 35577
Q ss_pred HHHHhHHHHhcCccchH
Q 025080 146 TASSVICRLRNDIVSQQ 162 (258)
Q Consensus 146 ~~~~~i~rL~NDi~S~~ 162 (258)
.......-+.||+..+-
T Consensus 244 ~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888899999998875
No 55
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=47.40 E-value=62 Score=27.92 Aligned_cols=82 Identities=6% Similarity=-0.046 Sum_probs=52.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHH--hhcCCCCChhhhhhccCchhHHHHHH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSF--LGMCDVANKEAFEWISKDPKISTASS 149 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
.+..+.+....++.+-..+..|.. +..||.++|++.-..-+|.-+..++.. +..|.. .+. ..++-...+
T Consensus 123 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~-----~~~---l~~~g~~lG 193 (315)
T 3tc1_A 123 IAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD-----AKI---YADFGLNFG 193 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC-----HHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC-----HHH---HHHHHHHHH
Confidence 345566777888899988888865 346899999987655555443322211 111222 122 245667788
Q ss_pred hHHHHhcCccchH
Q 025080 150 VICRLRNDIVSQQ 162 (258)
Q Consensus 150 ~i~rL~NDi~S~~ 162 (258)
...-+.||+..+-
T Consensus 194 ~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 194 MAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccc
Confidence 8888889888764
No 56
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=41.62 E-value=30 Score=30.67 Aligned_cols=87 Identities=7% Similarity=-0.001 Sum_probs=57.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhCCC----CCChhhhhccccccccch-hhHH--HHHhhcCCCCChhhhhhccCchhH
Q 025080 72 YLPYGKEKMQELVQMYFVQAKWFSEGY----VPTWDEYYPVGLVSCGYF-MLAT--NSFLGMCDVANKEAFEWISKDPKI 144 (258)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Ea~w~~~~~----~Ps~eEYl~~~~~s~g~~-~~~~--~~~~~~g~~l~~e~~~~~~~~~~l 144 (258)
.+..+.+.....+.+...+-.|...+. .+|.++|+..-..-+|.. +..+ +..+..| ..+++..+.+ .++
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~l---~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHANA---KKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHHH---HHH
Confidence 455566777888888888888876544 389999999876655554 3222 1122222 1355555443 567
Q ss_pred HHHHHhHHHHhcCccchH
Q 025080 145 STASSVICRLRNDIVSQQ 162 (258)
Q Consensus 145 ~~~~~~i~rL~NDi~S~~ 162 (258)
-.......-+.||+..+-
T Consensus 253 g~~lG~aFQI~DDiLD~~ 270 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLF 270 (374)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 788889999999998875
No 57
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=41.02 E-value=38 Score=29.04 Aligned_cols=84 Identities=11% Similarity=-0.021 Sum_probs=54.4
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHH--hhcCCCCChhhhhhccCchhHHHHH
Q 025080 71 SYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSF--LGMCDVANKEAFEWISKDPKISTAS 148 (258)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~--~~~g~~l~~e~~~~~~~~~~l~~~~ 148 (258)
..+..+.++...++.+...+-.|.... ||.++|++.-..-+|.-+..++.. +..|. ++ +.+ .++-...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~---~~l---~~~g~~l 196 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LG---EDL---YNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CC---HHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CH---HHH---HHHHHHH
Confidence 356667778889999999999997654 999999988665555543322211 11122 21 221 3456677
Q ss_pred HhHHHHhcCccchHHH
Q 025080 149 SVICRLRNDIVSQQFE 164 (258)
Q Consensus 149 ~~i~rL~NDi~S~~kE 164 (258)
....-+.||+..+.-+
T Consensus 197 G~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCc
Confidence 7888888888877543
No 58
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=38.47 E-value=30 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 025080 181 YGVSAEEVVTVFTEEVENAWK 201 (258)
Q Consensus 181 ~g~s~eeA~~~i~~~i~~~~k 201 (258)
||++.+||...+.+.+.++..
T Consensus 10 hG~~~~eA~~~l~~fl~~a~~ 30 (83)
T 2zqe_A 10 RGLTVAEALLEVDQALEEARA 30 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999998874
No 59
>4akk_A Nitrate regulatory protein; transcription; 2.14A {Klebsiella oxytoca}
Probab=37.58 E-value=28 Score=31.36 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHHhHHHHhcCccchHHHhh-cCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 025080 147 ASSVICRLRNDIVSQQFEQK-RGHIASGVECYIKQYGVSAEEVVTVFTEEVENA 199 (258)
Q Consensus 147 ~~~~i~rL~NDi~S~~kE~~-~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~ 199 (258)
....+-+|-+.+...+...+ |.-+.-+..++|+.+|+|+++|++.+++.--+.
T Consensus 346 ~~~~~~~l~~~~~~l~~~l~~r~~i~~Akg~lm~~~~~~e~~A~~~l~~~sm~~ 399 (423)
T 4akk_A 346 QAHELQQLSGQLASLKDALEERKLIEKAKSVLMTYQGMQEEQAWQALRKMAMDK 399 (423)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHc
Confidence 34445556666666655543 445677888999999999999999998865544
No 60
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=37.33 E-value=28 Score=24.76 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=24.3
Q ss_pred cCCcchhHHHHHhhCCCCHHHHHHHHHHHH
Q 025080 167 RGHIASGVECYIKQYGVSAEEVVTVFTEEV 196 (258)
Q Consensus 167 ~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i 196 (258)
-|.-.|+|..+|+-.|+|-.||++.+.+..
T Consensus 64 cg~gGd~i~fv~~~~~~sf~eA~~~La~~~ 93 (103)
T 1d0q_A 64 CGAGGNAFTFLMDIEGIPFVEAAKRLAAKA 93 (103)
T ss_dssp TCCEECHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 344568899999888999999999888753
No 61
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=36.81 E-value=14 Score=32.79 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHHHHHHHHHhhCCCCC-Chhhhhccc-cccccchh--hHHHHHhhcCCCCChhhhhhccCchhHHHHHH
Q 025080 74 PYGKEKMQELVQMYFVQAKWFSEGYVP-TWDEYYPVG-LVSCGYFM--LATNSFLGMCDVANKEAFEWISKDPKISTASS 149 (258)
Q Consensus 74 ~~~~~~~~~~~~~~~~Ea~w~~~~~~P-s~eEYl~~~-~~s~g~~~--~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~ 149 (258)
..+.++....+.+...+-.|...+..+ |.++|++.- .-|+++.. .+....+..|...+++..+.+ .++-...+
T Consensus 171 ~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l---~~~g~~lG 247 (368)
T 2q58_A 171 KIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLI---EAILYKLG 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTH---HHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHH---HHHHHHHH
Confidence 344455556666777677776655544 788899874 44554322 222233334444555444332 55777888
Q ss_pred hHHHHhcCccchH
Q 025080 150 VICRLRNDIVSQQ 162 (258)
Q Consensus 150 ~i~rL~NDi~S~~ 162 (258)
...-+.||+..+-
T Consensus 248 ~aFQI~DDiLD~~ 260 (368)
T 2q58_A 248 EFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 8999999998764
No 62
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=36.61 E-value=13 Score=27.72 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=21.6
Q ss_pred cchhHHHHHhhCCCCHHHHHHHHHHH
Q 025080 170 IASGVECYIKQYGVSAEEVVTVFTEE 195 (258)
Q Consensus 170 ~~n~V~~ym~e~g~s~eeA~~~i~~~ 195 (258)
.+.++.+||...|+|.++|++.++..
T Consensus 106 Tg~~~a~~l~~~g~~~~~a~~~~~~~ 131 (151)
T 1xri_A 106 TGCLVGCLRKLQKWCLTSIFDEYQRF 131 (151)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 35778899998899999999887654
No 63
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=35.20 E-value=31 Score=24.02 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 025080 181 YGVSAEEVVTVFTEEVENAWKD 202 (258)
Q Consensus 181 ~g~s~eeA~~~i~~~i~~~~k~ 202 (258)
||++.+||+..+...++++...
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~~ 35 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTEE 35 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999988743
No 64
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=35.17 E-value=26 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=21.5
Q ss_pred CCcchhHHHHHhhCCCCHHHHHHHHHH
Q 025080 168 GHIASGVECYIKQYGVSAEEVVTVFTE 194 (258)
Q Consensus 168 g~~~n~V~~ym~e~g~s~eeA~~~i~~ 194 (258)
|-..--|...|.|-|+|.++|++.+.+
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~ 89 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQE 89 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 333466889999999999999987764
No 65
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=33.53 E-value=12 Score=29.54 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=17.1
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 120 VLLVDDVitTG~Tl~aa~~~L 140 (186)
T 1l1q_A 120 VLLHDDVLATGGTLLAAIELC 140 (186)
T ss_dssp EEEEEEEESSSHHHHHHHHHH
T ss_pred EEEEecccccHHHHHHHHHHH
Confidence 457999999999998876544
No 66
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A*
Probab=33.27 E-value=17 Score=27.72 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=16.7
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||+.|.++|+..+....
T Consensus 84 VliVDDii~TG~Tl~~a~~~l 104 (152)
T 1nul_A 84 FIVIDDLVDTGGTAVAIREMY 104 (152)
T ss_dssp EEEEEEEECTTSSHHHHHHHC
T ss_pred EEEEEeecCchHHHHHHHHHH
Confidence 357999999999998865543
No 67
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=33.27 E-value=2.3e+02 Score=24.58 Aligned_cols=150 Identities=9% Similarity=0.054 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCc
Q 025080 79 KMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDI 158 (258)
Q Consensus 79 ~~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
..+.++.++. .+.. ...+|++|+..+-..+.|.--..++-.++....-++ ..+ .........+...-+.|=+
T Consensus 119 ~~~~m~~gm~---~dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~---~~~~~A~~lG~AlQltNil 190 (343)
T 3vj8_A 119 ICRRMGIGMA---EFLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVG---EDTERANSMGLFLQKTNII 190 (343)
T ss_dssp HHHHHHHHHH---HGGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHH---HCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---Hhcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhh---hHHHHHHHHHHHHHHHHHH
Confidence 3445555553 2332 567898888887777776655544444443221111 111 1123445556666666656
Q ss_pred cchHHHhhcCCc--chhHHHHHhhCCCCHHH---------HHHHHHHHHHHHHHHHHHhhcCCCCCcHH-----HHHHHH
Q 025080 159 VSQQFEQKRGHI--ASGVECYIKQYGVSAEE---------VVTVFTEEVENAWKDMNEEFLKPTAFPVA-----LIERPF 222 (258)
Q Consensus 159 ~S~~kE~~~g~~--~n~V~~ym~e~g~s~ee---------A~~~i~~~i~~~~k~ln~~~l~~~~~p~~-----~~~~~~ 222 (258)
........+|.+ +. =.|.++|++.++ +..-+..++..+..-+.+..---..+|.. |.-...
T Consensus 191 RDv~eD~~~gR~YlP~---e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~~~~~~~~~ip~~ 267 (343)
T 3vj8_A 191 RDYLEDQQGGREFWPQ---EVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQV 267 (343)
T ss_dssp HTHHHHHHTTCCCSCH---HHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHhHHHHhCCCeeCCH---HHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHH
Confidence 666666667764 22 245678988753 34445555555554443322111234542 322211
Q ss_pred hhhhhhhhhhccCCCCC
Q 025080 223 NIARVIEFLNKKGDWYT 239 (258)
Q Consensus 223 n~~R~~~~~Y~~~D~~t 239 (258)
=..+++.-+|+..|-|.
T Consensus 268 lA~~tL~~i~~~~~v~~ 284 (343)
T 3vj8_A 268 MAIATLAACYNNQQVFK 284 (343)
T ss_dssp HHHHHHHHHTTCGGGGT
T ss_pred HHHHHHHHHHhCCcccc
Confidence 12235556676655553
No 68
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=32.26 E-value=66 Score=28.55 Aligned_cols=77 Identities=8% Similarity=0.017 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhhhccccccccch-hhHH--HHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhc
Q 025080 80 MQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYF-MLAT--NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRN 156 (258)
Q Consensus 80 ~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~-~~~~--~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~N 156 (258)
...++.+...+-.|.... .||.++|++.-..-+|.. +..+ +..+..| .+++..+.+ ..+-.......-+.|
T Consensus 184 ~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~l---~~~G~~lG~AFQI~D 257 (380)
T 3lk5_A 184 RTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDAL---LHYGHDIGIAFQLRD 257 (380)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHH
Confidence 346677888888887644 579999999865555544 2211 1112222 345544443 556778888999999
Q ss_pred CccchH
Q 025080 157 DIVSQQ 162 (258)
Q Consensus 157 Di~S~~ 162 (258)
|+..+-
T Consensus 258 DiLd~~ 263 (380)
T 3lk5_A 258 DLLGVF 263 (380)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998774
No 69
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=31.79 E-value=13 Score=28.72 Aligned_cols=20 Identities=5% Similarity=0.182 Sum_probs=16.5
Q ss_pred hheeccccCCCCCHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLL 27 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~ 27 (258)
+.++||+++.++|+.++...
T Consensus 123 VllVDDvitTG~Tl~~~~~~ 142 (175)
T 1vch_A 123 VVLVSDVVASGETMRAMEKM 142 (175)
T ss_dssp EEEEEEEESSSHHHHHHHHH
T ss_pred EEEEeccccchHHHHHHHHH
Confidence 56899999999998887544
No 70
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=31.21 E-value=13 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=16.6
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||++|.++|+.++....
T Consensus 86 VllVDDvitTG~Tl~~a~~~L 106 (153)
T 1vdm_A 86 VVIVDDVSDTGKTLEVVIEEV 106 (153)
T ss_dssp EEEEEEEESSCHHHHHHHHHH
T ss_pred EEEEecccCChHHHHHHHHHH
Confidence 457999999999988865443
No 71
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=30.19 E-value=42 Score=25.49 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=17.8
Q ss_pred chhHHH-HHhhCCCCHHHHHHHHHH
Q 025080 171 ASGVEC-YIKQYGVSAEEVVTVFTE 194 (258)
Q Consensus 171 ~n~V~~-ym~e~g~s~eeA~~~i~~ 194 (258)
+.+|.+ +|+.+|+|.++|++.++.
T Consensus 102 ~~vv~ayLm~~~~~s~~~A~~~v~~ 126 (161)
T 3emu_A 102 PAIVIAFLMYYQRLSFINAFNKVQG 126 (161)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345544 556679999999998876
No 72
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU genomics, PSI, protein structure initative, midwest center structural genomics; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=29.40 E-value=15 Score=29.06 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=17.0
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 123 VllVDDvitTG~Tl~~a~~~L 143 (197)
T 1y0b_A 123 VLIIDDFLANGQAAHGLVSIV 143 (197)
T ss_dssp EEEEEEEESSCHHHHHHHHHH
T ss_pred EEEEEcccccCHHHHHHHHHH
Confidence 467999999999998875544
No 73
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=27.43 E-value=1.5e+02 Score=20.82 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 025080 17 AYGFFEELKLLAEAVQRW 34 (258)
Q Consensus 17 ~~gt~eel~~~~~ai~rW 34 (258)
+.+.++|++.|..-+++.
T Consensus 4 a~~dpeElr~Fa~~L~~F 21 (94)
T 3fx7_A 4 VQMDTEEVREFVGHLERF 21 (94)
T ss_dssp -CCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 357899999999888764
No 74
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding P pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Probab=27.41 E-value=18 Score=28.21 Aligned_cols=21 Identities=10% Similarity=-0.085 Sum_probs=16.9
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 101 VllVDDvitTG~Tl~~a~~~L 121 (181)
T 1a3c_A 101 VILVDDVLYTGRTVRAGMDAL 121 (181)
T ss_dssp EEEEEEEESSSHHHHHHHHHH
T ss_pred EEEEeCccCcHHHHHHHHHHH
Confidence 467999999999988875544
No 75
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=27.13 E-value=18 Score=28.50 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=16.8
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 125 VLlVDDvitTG~Tl~~~~~~L 145 (187)
T 1g2q_A 125 VIIVDDIIATGGSAAAAGELV 145 (187)
T ss_dssp EEEEEEEESSCHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHH
Confidence 457999999999988875543
No 76
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Probab=27.05 E-value=18 Score=28.23 Aligned_cols=21 Identities=10% Similarity=-0.084 Sum_probs=16.9
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 99 VllVDDvitTG~Tl~~a~~~L 119 (181)
T 1ufr_A 99 IVLVDDVLYTGRTARAALDAL 119 (181)
T ss_dssp EEEEEEEESSSHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHH
Confidence 457999999999988875544
No 77
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=26.68 E-value=19 Score=28.09 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=16.8
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 123 VllVDDvitTG~Tl~~~~~~L 143 (180)
T 1zn8_A 123 VVVVDDLLATGGTMNAACELL 143 (180)
T ss_dssp EEEEEEEESSSHHHHHHHHHH
T ss_pred EEEEcCCcccHHHHHHHHHHH
Confidence 457999999999988875543
No 78
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=26.61 E-value=55 Score=24.68 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=25.7
Q ss_pred hhcCCc--chhHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 025080 165 QKRGHI--ASGVECYIKQYGVSAEEVVTVFTEEVENAWKD 202 (258)
Q Consensus 165 ~~~g~~--~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ 202 (258)
.++|+. .+.+. =||++.+||...+.+.+.++...
T Consensus 39 Lr~G~~~~~~~LD----LHG~~~~EA~~~L~~fL~~a~~~ 74 (137)
T 3qd7_X 39 LRSGKYPQQASLN----LLRQPVEECRKMVFSFIQQALAD 74 (137)
T ss_dssp HHSCCCCGGGEEE----CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCeEEE----CCCCCHHHHHHHHHHHHHHHHHC
Confidence 567764 33343 27999999999999999988743
No 79
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix}
Probab=26.26 E-value=19 Score=28.14 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=17.0
Q ss_pred hheeccccCCCCCHHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLAE 29 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~~ 29 (258)
+.++||++|.++|+.++.....
T Consensus 109 VllVDDvitTG~Tl~~~~~~L~ 130 (178)
T 2yzk_A 109 VVVVDDVATTGTSIAKSIEVLR 130 (178)
T ss_dssp EEEEEEEESSSHHHHHHHHHHH
T ss_pred EEEEEeccCCcHHHHHHHHHHH
Confidence 3579999999999888755443
No 80
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12}
Probab=25.96 E-value=19 Score=28.38 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=16.8
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 129 VLlVDDvitTG~Tl~~a~~~L 149 (190)
T 2dy0_A 129 VLVVDDLLATGGTIEATVKLI 149 (190)
T ss_dssp EEEEEEEESSCHHHHHHHHHH
T ss_pred EEEEEccccchHHHHHHHHHH
Confidence 457999999999988875544
No 81
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=25.73 E-value=64 Score=17.79 Aligned_cols=17 Identities=41% Similarity=0.403 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHh
Q 025080 17 AYGFFEELKLLAEAVQR 33 (258)
Q Consensus 17 ~~gt~eel~~~~~ai~r 33 (258)
.+||++||..+-+..++
T Consensus 10 vggtpeelkklkeeakk 26 (36)
T 2ki0_A 10 VGGTPEELKKLKEEAKK 26 (36)
T ss_dssp BCCCHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 57899999988776553
No 82
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.44A {Corynebacterium diphtheriae}
Probab=25.44 E-value=22 Score=27.85 Aligned_cols=22 Identities=9% Similarity=-0.112 Sum_probs=17.3
Q ss_pred hheeccccCCCCCHHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLAE 29 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~~ 29 (258)
+.++||+++.++|+.++.....
T Consensus 117 VllVDDvitTG~Tl~~~~~~L~ 138 (180)
T 2p1z_A 117 VLVVEDTTTTGNSPLTAVKALR 138 (180)
T ss_dssp EEEEEEECSSSHHHHHHHHHHH
T ss_pred EEEEEeccCCcHHHHHHHHHHH
Confidence 4579999999999888755443
No 83
>2x3m_A Hypothetical protein ORF239; unknown function; 1.45A {Pyrobaculum spherical virus}
Probab=24.61 E-value=92 Score=24.35 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhh-HHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCc
Q 025080 80 MQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFML-ATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDI 158 (258)
Q Consensus 80 ~~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~-~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 158 (258)
+.-|.+.|+.||+ +.-|+..+-+..++.-.+..-. ...+ .+|+.++.++++. +...++.-.+-+++|=..|-
T Consensus 93 mywytrtyleeak----dirpdiadalargmaglafgrtdwvas--ml~P~I~R~iY~~-~~V~~~~~EtRD~LRR~S~Y 165 (239)
T 2x3m_A 93 MYWYTRTYLEEAK----DIRPDIADALARGMAGLAFGRTDWVAS--MLDPQIMRHIYTD-PEVARIYSETRDMLRRVSDY 165 (239)
T ss_dssp HHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHHHTCHHHHGG--GGCHHHHGGGTTC-HHHHHHHHHHHHHHHHHTTT
T ss_pred hhhhHHHHHHHhh----ccCccHHHHHHhhhhcccccchHHHHH--hhChHHHHHHHhc-ccHHHHHHHHHHHHHHHhhh
Confidence 3446688888877 5567777776655432221111 0111 1233344433333 22233444555566655554
Q ss_pred cchHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHH
Q 025080 159 VSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEV 196 (258)
Q Consensus 159 ~S~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i 196 (258)
+-----.+-|.++..|. |.|.+|--.+..+.++.+++
T Consensus 166 YiSl~t~elg~~~DIia-~AkAkG~~~evv~R~~AE~v 202 (239)
T 2x3m_A 166 YISLTTMELGKVADIIA-EAKAKGENPEVVAREIAEAV 202 (239)
T ss_dssp CCCCCHHHHHHHHHHHH-HHHHHTCCHHHHHHHHHHHC
T ss_pred eEecchhhhhhHHHHHH-HHHhcCCCchHHHHHHHHHc
Confidence 32222345566777775 77777766665555555443
No 84
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=24.16 E-value=55 Score=24.07 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=17.9
Q ss_pred chhHHHHHh-hCCCCHHHHHHHHHH
Q 025080 171 ASGVECYIK-QYGVSAEEVVTVFTE 194 (258)
Q Consensus 171 ~n~V~~ym~-e~g~s~eeA~~~i~~ 194 (258)
+.++.+|+- .+|+|.++|++.++.
T Consensus 96 ~~~v~ayLm~~~~~~~~~A~~~v~~ 120 (144)
T 3s4e_A 96 AAIVIGFLMNSEQTSFTSAFSLVKN 120 (144)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455656654 469999999988876
No 85
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=24.14 E-value=51 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=19.7
Q ss_pred cchhHHHHHhhC-CCCHHHHHHHHHH
Q 025080 170 IASGVECYIKQY-GVSAEEVVTVFTE 194 (258)
Q Consensus 170 ~~n~V~~ym~e~-g~s~eeA~~~i~~ 194 (258)
.+..+.+|+... |++.++|++.+++
T Consensus 123 Tg~~~a~~L~~~~~~~~~~a~~~vr~ 148 (167)
T 3s4o_A 123 APILVALALVEYGNVSALDAIALIRE 148 (167)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 346677777777 9999999988765
No 86
>1nh1_A Avirulence B protein; helix bundle, avirulence protein; 2.20A {Pseudomonas syringae} SCOP: e.45.1.1 PDB: 2nud_A 2nun_A*
Probab=23.79 E-value=1.9e+02 Score=24.59 Aligned_cols=70 Identities=13% Similarity=0.262 Sum_probs=45.4
Q ss_pred Hhc-cCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHHHHHhhCC---CCCChhhhhc
Q 025080 32 QRW-DIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEG---YVPTWDEYYP 107 (258)
Q Consensus 32 ~rW-d~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~---~~Ps~eEYl~ 107 (258)
.|| |...-+..|+.|+.| +.+|+.-...+..+.. |+ +.-|-+.|.+- .+||.+. --|+..++.+
T Consensus 48 ARWPD~~Nkd~tp~qmeYg-qSfy~~sR~aG~~IA~-G~---I~sF~eLW~~A-------~~WR~Sr~~~a~~~~~~Fa~ 115 (330)
T 1nh1_A 48 ARWPDDSSKSNTPENRAYC-QSMYNSIRSAGDEISR-GG---ITSFEELWGRA-------TEWRLSKLQRGEPLYSAFAS 115 (330)
T ss_dssp CCCSSCCCCCCSHHHHHHH-HHHHHHHHHHHHHHHT-TS---CCSHHHHHHHH-------HHHHHHTSCTTCTTHHHHTS
T ss_pred eccCCccccccCHHHHHHH-HHHHHHHHHhcccccc-Cc---cccHHHHHHHH-------HHHHHhhhcccCcchHHhcC
Confidence 489 444667788989877 5667777666666554 33 56777777642 4788766 4555666666
Q ss_pred cccccc
Q 025080 108 VGLVSC 113 (258)
Q Consensus 108 ~~~~s~ 113 (258)
-|....
T Consensus 116 ~R~~nt 121 (330)
T 1nh1_A 116 ERTSDT 121 (330)
T ss_dssp BCCTTS
T ss_pred ccCCCc
Confidence 655443
No 87
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis}
Probab=23.23 E-value=22 Score=27.95 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.5
Q ss_pred hheeccccCCCCCHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKL 26 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~ 26 (258)
+.++||++|.++|+.++..
T Consensus 101 VllVDDvi~TG~Tl~~a~~ 119 (185)
T 2geb_A 101 VLIVEDIIDSGLTLAYLRE 119 (185)
T ss_dssp EEEEEEEESSCHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHH
Confidence 4679999999999887644
No 88
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=23.18 E-value=59 Score=23.89 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=16.8
Q ss_pred hhHHHH-HhhCCCCHHHHHHHHHH
Q 025080 172 SGVECY-IKQYGVSAEEVVTVFTE 194 (258)
Q Consensus 172 n~V~~y-m~e~g~s~eeA~~~i~~ 194 (258)
..|.+| |+..|+|.++|++.++.
T Consensus 97 ~~v~ayLm~~~~~~~~~A~~~v~~ 120 (145)
T 2nt2_A 97 STVIAYAMKEYGWNLDRAYDYVKE 120 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444444 55569999999988776
No 89
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1
Probab=23.08 E-value=22 Score=27.77 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=15.5
Q ss_pred hheeccccCCCCCHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKL 26 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~ 26 (258)
+.++||+.|.++|+.++..
T Consensus 98 VllVDDvi~TG~Tl~~a~~ 116 (183)
T 1hgx_A 98 VLVVEDIIDTGLTMYQLLN 116 (183)
T ss_dssp EEEEEEEESSSHHHHHHHH
T ss_pred EEEECCccCCHHHHHHHHH
Confidence 4579999999999887644
No 90
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=23.02 E-value=37 Score=27.37 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=18.2
Q ss_pred hheeccccCCCCCHHHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLAEA 30 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~~a 30 (258)
+.++||+.+.++|+.++......
T Consensus 120 VliVDDvitTG~Tl~~a~~~l~~ 142 (213)
T 1lh0_A 120 VMLVDDVITAGTAIRESMEIIQA 142 (213)
T ss_dssp EEEECSCCSSSCHHHHHHHHHHH
T ss_pred EEEEEecccchHHHHHHHHHHHH
Confidence 56899999999999887655443
No 91
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Probab=22.17 E-value=52 Score=25.61 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=21.0
Q ss_pred CCcchhHHHHHhhCCCCHHHHHHHHHH
Q 025080 168 GHIASGVECYIKQYGVSAEEVVTVFTE 194 (258)
Q Consensus 168 g~~~n~V~~ym~e~g~s~eeA~~~i~~ 194 (258)
|-.+..|.+|+...|++.++|++.++.
T Consensus 129 gRSg~~va~~L~~~g~~~~~a~~~vr~ 155 (189)
T 3rz2_A 129 GRAPVLVALALIEGGMKYEDAVQFIRQ 155 (189)
T ss_dssp TTHHHHHHHHHHTTTCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334577889988889999999877654
No 92
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Probab=22.15 E-value=24 Score=28.25 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.5
Q ss_pred hheeccccCCCCCHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKL 26 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~ 26 (258)
+.++||++|.++|+.++..
T Consensus 121 VllVDDvi~TG~Tl~~a~~ 139 (205)
T 1yfz_A 121 VLIVEDIIDSGLTLAYLRE 139 (205)
T ss_dssp EEEEEEEESSCHHHHHHHH
T ss_pred EEEECCccCcHHHHHHHHH
Confidence 4679999999999887644
No 93
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=21.95 E-value=1.3e+02 Score=21.49 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=26.4
Q ss_pred HHHHhcCccchHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 025080 151 ICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENA 199 (258)
Q Consensus 151 i~rL~NDi~S~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~ 199 (258)
-++|+-||.- .+...|-++.|+|.++|++.+.+..+..
T Consensus 49 WG~lLaDlar-----------HaA~a~a~~~~~s~~eal~rI~egF~~E 86 (101)
T 3ic3_A 49 WGLLLVDIAR-----------HAARSYARESEYTEDEALERIVEMFEAE 86 (101)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3666666653 2334577888999999999888765543
No 94
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=21.30 E-value=78 Score=23.87 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=15.3
Q ss_pred HHHHhhCCCCHHHHHHHHHH
Q 025080 175 ECYIKQYGVSAEEVVTVFTE 194 (258)
Q Consensus 175 ~~ym~e~g~s~eeA~~~i~~ 194 (258)
..+|+..|+|.++|++.+++
T Consensus 103 ayLm~~~~~~~~~A~~~v~~ 122 (165)
T 1wrm_A 103 AYIMTVTDFGWEDALHTVRA 122 (165)
T ss_dssp HHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 34455669999999988765
No 95
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=20.92 E-value=2.3e+02 Score=24.04 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHHHHHhhCCCCCChhhh
Q 025080 48 VLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEY 105 (258)
Q Consensus 48 ~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~w~~~~~~Ps~eEY 105 (258)
..+..+-..+.+++.++....-.....++...+++|+.+. .-..|...+.+||.+|-
T Consensus 92 ~~L~~i~~~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~-sf~~yL~~~~Lit~eev 148 (290)
T 3qb5_K 92 IKLDGVRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAV-SFQHFIKTRSLISMDEI 148 (290)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHH-HHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCHHHH
Confidence 3344445556666655543222123456677888998875 34678889999999984
No 96
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*
Probab=20.80 E-value=67 Score=24.58 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=17.8
Q ss_pred chhHHHH-HhhCCCCHHHHHHHHHH
Q 025080 171 ASGVECY-IKQYGVSAEEVVTVFTE 194 (258)
Q Consensus 171 ~n~V~~y-m~e~g~s~eeA~~~i~~ 194 (258)
+.+|.+| |+..|+|.++|++.++.
T Consensus 130 g~~v~ayLm~~~~~~~~~A~~~v~~ 154 (183)
T 3f81_A 130 PTLVIAYLMMRQKMDVKSALSIVRQ 154 (183)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3545555 45679999999998875
No 97
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Probab=20.13 E-value=29 Score=28.53 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=16.6
Q ss_pred hheeccccCCCCCHHHHHHHH
Q 025080 8 ASIIDDTFDAYGFFEELKLLA 28 (258)
Q Consensus 8 ~~~~DD~~D~~gt~eel~~~~ 28 (258)
+.++||+++.++|+.++....
T Consensus 141 VLIVDDvitTG~Tl~~a~~~L 161 (236)
T 1qb7_A 141 VVLIDDVLATGGTALSGLQLV 161 (236)
T ss_dssp EEEEEEEESSCHHHHHHHHHH
T ss_pred EEEEecccccHHHHHHHHHHH
Confidence 467999999999988865443
Done!