BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025081
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5DJU3|ORC3_SPECI Origin recognition complex subunit 3 OS=Spermophilus citellus
GN=ORC3 PE=2 SV=1
Length = 713
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 68 RPVSRSQLNIEKESRAVNEKAASLIECMVRDYMQPVECSPLHEIVCFKNVETLQLALIGD 127
R S+ Q E + EK + I+C+VR+Y+ P E PLHE+V F TL+ L
Sbjct: 541 RRTSKKQTRFE----VLREKVVNFIDCLVREYLLPPETQPLHEVVYFSAAHTLREHLNAA 596
Query: 128 PRRRIQIDLLESYKILRCSCCSRSGHSLLPSLH-DTSILYNLAQEHGDHINLHDWYQSFK 186
PR + L + Y ++ +S +P++ D I Y L E INL DW ++F
Sbjct: 597 PRIALHTALNDPYFYIKNEAL-KSEEGCIPNIAPDICIAYKLHLECSRLINLVDWSEAFA 655
Query: 187 SKVCSSRSKGKHKSKQSPLPKKRKDMNEPDKPCEASIQARFCKAVTELQITGLIRMPTKR 246
+ V ++ K + S + ++MNE I ARF +AV+EL++ G I+ PTK+
Sbjct: 656 T-VVTAAEKMESNSATT------EEMNE-------IIHARFIRAVSELELLGFIK-PTKQ 700
Query: 247 RPDFVQRVAFG 257
+ D V R+ +G
Sbjct: 701 KTDHVARLTWG 711
>sp|Q9UBD5|ORC3_HUMAN Origin recognition complex subunit 3 OS=Homo sapiens GN=ORC3 PE=1
SV=1
Length = 711
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 83 AVNEKAASLIECMVRDYMQPVECSPLHEIVCFKNVETLQLALIGDPRRRIQIDLLESYKI 142
+ E + I+C+VR+Y+ P E PLHE+V F L+ L PR + L Y
Sbjct: 550 VLRENVVNFIDCLVREYLLPPETQPLHEVVYFSAAHALREHLNAAPRIALHTALNNPYYY 609
Query: 143 LRCSCCSRSGHSLLPSLH-DTSILYNLAQEHGDHINLHDWYQSFKSKVCSSRSKGKHKSK 201
L+ +S +P++ D I Y L E INL DW ++F + V ++ + +
Sbjct: 610 LKNEAL-KSEEGCIPNIAPDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDANSAT 668
Query: 202 QSPLPKKRKDMNEPDKPCEASIQARFCKAVTELQITGLIRMPTKRRPDFVQRVAFG 257
++MNE I ARF +AV+EL++ G I+ PTK++ D V R+ +G
Sbjct: 669 S-------EEMNE-------IIHARFIRAVSELELLGFIK-PTKQKTDHVARLTWG 709
>sp|Q4R180|ORC3_RAT Origin recognition complex subunit 3 OS=Rattus norvegicus GN=Orc3
PE=2 SV=1
Length = 711
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 17/173 (9%)
Query: 86 EKAASLIECMVRDYMQPVECSPLHEIVCFKNVETLQLALIGDPRRRIQIDLLESYKILRC 145
E + I+ +VRDY+ P E PLHE+V F TL+ L PR + L Y L+
Sbjct: 553 ENVINFIDNLVRDYLLPPEGQPLHEVVYFSAANTLREHLNAAPRIALHTALNNPYYYLKN 612
Query: 146 SCCSRSGHSLLPSLH-DTSILYNLAQEHGDHINLHDWYQSFKSKVCSSRSKGKHKSKQSP 204
+S +PS+ D I Y L E INL DW ++F + V ++ + +
Sbjct: 613 EAL-KSEEGCIPSVAPDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDTNSTVS-- 669
Query: 205 LPKKRKDMNEPDKPCEASIQARFCKAVTELQITGLIRMPTKRRPDFVQRVAFG 257
++M+E I ARF +AV+EL++ G I+ PTK++ D V R+ +G
Sbjct: 670 -----EEMSE-------IIHARFIRAVSELELLGFIK-PTKQKTDHVARLTWG 709
>sp|Q32PJ3|ORC3_BOVIN Origin recognition complex subunit 3 OS=Bos taurus GN=ORC3 PE=2
SV=1
Length = 712
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 21/191 (10%)
Query: 68 RPVSRSQLNIEKESRAVNEKAASLIECMVRDYMQPVECSPLHEIVCFKNVETLQLALIGD 127
R S+ Q E + E+ S ++ +VR+Y+ P + PLHE + F + TL+ L
Sbjct: 540 RSTSKRQTKFE----VLREQVVSFVDSLVREYLLPPDTQPLHETLYFSSAHTLRQHLNAA 595
Query: 128 PRRRIQIDLLESYKILRCSCCSRSGHSLLPSLH-DTSILYNLAQEHGDHINLHDWYQSFK 186
PR + L Y L+ RS +P++ D I Y L E INL DW ++F
Sbjct: 596 PRIALHTALNNPYYYLKNEAL-RSEEGCIPNVAPDICIAYKLHLECSRLINLVDWSEAFA 654
Query: 187 SKVCSSRSKGKHKSKQSPLPKKRKDMNEPDKPCEASIQARFCKAVTELQITGLIRMPTKR 246
+ V ++ + S +R ++ I ARF +AV+EL++ G I+ PTK+
Sbjct: 655 TVVTAAEKMDAN----SVTSGERNEI----------IHARFIRAVSELELLGFIK-PTKQ 699
Query: 247 RPDFVQRVAFG 257
+ D V R+ +G
Sbjct: 700 KTDHVARLTWG 710
>sp|Q9JK30|ORC3_MOUSE Origin recognition complex subunit 3 OS=Mus musculus GN=Orc3 PE=1
SV=1
Length = 715
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 86 EKAASLIECMVRDYMQPVECSPLHEIVCFKNVETLQLALIGDPRRRIQIDLLESYKILRC 145
E + I+ +VRDY+ P E PLHE+V F TL+ L PR + L Y L+
Sbjct: 560 ENVMNFIDNLVRDYLLPPESQPLHEVVYFSAANTLREHLNAAPRIALHTALNNPYYYLK- 618
Query: 146 SCCSRSGHSLLPSLH-DTSILYNLAQEHGDHINLHDWYQSFKSKVCSSRSKGKHKSKQSP 204
+ +P+ D I Y L E INL DW ++F + V ++ + +
Sbjct: 619 ---NEELEGCIPNTAPDICIAYKLHLECSLLINLVDWAEAFATVVTAAEKMDANSTVS-- 673
Query: 205 LPKKRKDMNEPDKPCEASIQARFCKAVTELQITGLIRMPTKRRPDFVQRVAFG 257
++M+E I ARF +AV+EL++ G I+ PTK++ D V R+ +G
Sbjct: 674 -----EEMSE-------VIHARFIRAVSELELLGFIK-PTKQKTDHVARLTWG 713
>sp|Q10067|ORC3_SCHPO Origin recognition complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=orc3 PE=1 SV=2
Length = 690
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 146 SCCSRSGHSLLPSLHDTSILYNLAQEHGDHINLHDWYQSFKSKVCSSRSKGKHKS---KQ 202
S + G L+ L D SILY L E G +NL+DWY +F + + + K ++
Sbjct: 572 SNAEKDGKDLISWLPDLSILYKLYSESGALLNLYDWYIAFSEHLQAGKENLKEDDNHPRE 631
Query: 203 SPLPKKRKDMNEPD----KPCEASIQARFCKAVTELQITGLIRMPTKRRPDFVQRVAF 256
SP ++++NE D K EA +Q+RF + EL+ GLI+ PT R+ D V + +
Sbjct: 632 SPQGNLQRELNELDEDKRKLEEAKLQSRFLFGLEELRFLGLIK-PTARKTDHVMKTIY 688
>sp|Q55BR6|ORC3_DICDI Origin recognition complex subunit 3 OS=Dictyostelium discoideum
GN=orcC PE=3 SV=2
Length = 1080
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 30/168 (17%)
Query: 91 LIECMVRDYMQPVECS-PLHEIVCF-KNVETLQLALIGDPRRRIQIDLLESYKILRCSCC 148
++ ++ DY+ P S PL EI F + V Q I +L+ S + L+C CC
Sbjct: 937 IVSVIIEDYLYPPLVSVPLSEIFDFTQTVFITQSRFNFHTAEGINDNLIHSVRKLKCECC 996
Query: 149 SRSGHSLLPSLHDTSILYNLAQEHGDHINLHDWYQSFKSKVCSSRSKGKHKSKQSPLPKK 208
SL ++ D SI + L G +IN DW SF S + +P P
Sbjct: 997 I---DSLCGTMDDFSISFILLLRSGRYINYFDWLTSFCSII---------NGDNNPTP-- 1042
Query: 209 RKDMNEPDKPCEASIQARFCKAVTELQITGLIRMPTKRRPDFVQRVAF 256
+++ARF K+V LI+ T++R D +++AF
Sbjct: 1043 -------------NLKARFIKSVDTFVSLELIK-KTRKRKDHFEKIAF 1076
>sp|P57397|SERC_BUCAI Phosphoserine aminotransferase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=serC PE=3 SV=1
Length = 361
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 118 ETLQLALIGDPRRRIQIDLLESYKILRCSCCSRSGHSLLPSLHDTSILYNLAQEHGDHIN 177
E +Q+AL + R + + +S+K+L C +R S +P ++L NL + D+IN
Sbjct: 45 EFIQMALEAEKDLRDLLKIPDSFKVLFCQGGARGQFSAIP----MNLLNNL--QTADYIN 98
Query: 178 LHDWYQSF---KSKVCSSRS---KGKHKSKQSPLPKKRKDMNE 214
W S K C+ RS + + K+S LP + ++NE
Sbjct: 99 SGYWSNSAFMEAKKYCTPRSIFIRETNGVKESLLPMHKWNINE 141
>sp|B8D9A2|SERC_BUCA5 Phosphoserine aminotransferase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=serC PE=3 SV=1
Length = 361
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 118 ETLQLALIGDPRRRIQIDLLESYKILRCSCCSRSGHSLLPSLHDTSILYNLAQEHGDHIN 177
E +Q+AL + R + + +S+K+L C +R S +P ++L NL + D+IN
Sbjct: 45 EFIQMALEAEKDLRDLLKIPDSFKVLFCQGGARGQFSAIP----MNLLNNL--QTADYIN 98
Query: 178 LHDWYQSF---KSKVCSSRS---KGKHKSKQSPLPKKRKDMNE 214
W S K C+ RS + + K+S LP + ++NE
Sbjct: 99 SGYWSNSAFMEAKKYCTPRSIFIRETNGVKESLLPMHKWNINE 141
>sp|B8D7K4|SERC_BUCAT Phosphoserine aminotransferase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=serC PE=3 SV=1
Length = 361
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 118 ETLQLALIGDPRRRIQIDLLESYKILRCSCCSRSGHSLLPSLHDTSILYNLAQEHGDHIN 177
E +Q+AL + R + + +S+K+L C +R S +P ++L NL + D+IN
Sbjct: 45 EFIQMALEAEKDLRDLLKIPDSFKVLFCQGGARGQFSAIP----MNLLNNL--QTADYIN 98
Query: 178 LHDWYQSF---KSKVCSSRS---KGKHKSKQSPLPKKRKDMNE 214
W S K C+ RS + + K+S LP + ++NE
Sbjct: 99 SGYWSNSAFMEAKKYCTPRSIFIRETNGVKESLLPMHKWNINE 141
>sp|Q70LE9|Y190_AFV1Y Uncharacterized protein ORF190 OS=Acidianus filamentous virus 1
(isolate United States/Yellowstone) GN=ORF190 PE=4 SV=1
Length = 190
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 99 YMQPVECSPLHEIVCFKNVETLQLALIGDPRRRIQIDLLESYKILRCSCCSRSGHSLLPS 158
YMQ E P+ + V + +E L++ RI IDL + ++I S G L
Sbjct: 96 YMQIDELKPVTQEVMLRAIEALRIPFSKREGLRIDIDLTQYHEI---EYTSEDGLQLRYG 152
Query: 159 LHDTSILYNLAQEHGDHINL--HDWYQSFKSKVCS 191
+ D I + +G I++ +DW+ SF+ V S
Sbjct: 153 VDDIQIKDDKLVMNGLAIDILNNDWFISFEKNVMS 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,970,100
Number of Sequences: 539616
Number of extensions: 3382655
Number of successful extensions: 10625
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 10600
Number of HSP's gapped (non-prelim): 35
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)