Query 025081
Match_columns 258
No_of_seqs 138 out of 187
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 03:22:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025081.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025081hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fnna1 a.4.5.11 (A:277-388) C 67.4 2.7 0.0002 30.7 4.1 21 221-241 52-72 (112)
2 d1w5sa1 a.4.5.11 (A:300-409) C 29.7 19 0.0014 26.0 3.2 45 174-242 27-71 (110)
3 d1nvpb_ a.32.1.1 (B:) Large ch 13.9 79 0.0058 19.0 3.1 27 5-31 8-40 (43)
4 d1s28a_ d.198.1.1 (A:) AvrPphF 13.8 1E+02 0.0075 22.5 4.4 34 84-117 3-38 (130)
5 d1nh2b_ a.32.1.1 (B:) Large ch 12.4 89 0.0065 19.0 3.1 27 5-31 10-42 (46)
6 d2g3qa1 a.5.2.1 (A:1339-1381) 11.6 4.4 0.00032 25.1 -3.5 26 229-257 6-31 (43)
7 d1zavu1 a.108.1.1 (U:1-30) Rib 10.2 1.2E+02 0.0089 16.6 2.8 24 7-30 3-26 (30)
8 d1irza_ a.4.1.11 (A:) Arr10-B 9.6 74 0.0054 20.5 2.1 17 218-234 9-25 (64)
9 d1qasa1 a.39.1.7 (A:205-298) P 7.9 1.2E+02 0.009 19.9 2.8 30 158-187 6-35 (94)
10 d3bwga1 a.4.5.6 (A:5-82) Trans 7.9 65 0.0048 20.8 1.2 27 226-253 38-64 (78)
No 1
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=67.40 E-value=2.7 Score=30.66 Aligned_cols=21 Identities=10% Similarity=0.425 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHcCccc
Q 025081 221 ASIQARFCKAVTELQITGLIR 241 (258)
Q Consensus 221 ~~~qArF~rAv~EL~~lGfIK 241 (258)
...+.+|..=+.||+++|+|.
T Consensus 52 pls~rr~~~~l~~Le~lGiI~ 72 (112)
T d1fnna1 52 PRVHSQLWSYLNDLREKGIVE 72 (112)
T ss_dssp CCCHHHHHHHHHHHHHTTSSE
T ss_pred hhhHHHHHHHHHHHHhCCCee
Confidence 356899999999999999996
No 2
>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152, C-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=29.69 E-value=19 Score=26.04 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=32.1
Q ss_pred CcccHHHHHHHHHhhhcCcccccCCCCCCCCCcccccCCCCCCChhhHHHHHHHHHHHHHHHHcCcccC
Q 025081 174 DHINLHDWYQSFKSKVCSSRSKGKHKSKQSPLPKKRKDMNEPDKPCEASIQARFCKAVTELQITGLIRM 242 (258)
Q Consensus 174 ~lINlyDw~~AF~~~l~~~~~~~~~~~k~~~~~kK~k~~~e~~~~~e~~~qArF~rAv~EL~~lGfIK~ 242 (258)
..|+.-|-|..|.+++...-. .+...+-+|..=+.+|+++|+|..
T Consensus 27 ~~~~tGei~~~Y~ev~c~~~~------------------------~~P~~~t~~~~~l~~Le~lGiI~~ 71 (110)
T d1w5sa1 27 EWINAGLLRQRYEDASLTMYN------------------------VKPRGYTQYHIYLKHLTSLGLVDA 71 (110)
T ss_dssp SSBCHHHHHHHHHHHHHHHSC------------------------CCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCchHHHHHHHHHHHHHHhC------------------------CCCccHHHHHHHHHHHHHcCCeEE
Confidence 468877777777765432110 123458999999999999999973
No 3
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.95 E-value=79 Score=19.03 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.8
Q ss_pred hhHHHHHHHhcc------CChhHHHHHHHHHHH
Q 025081 5 RLICQAVQKVRD------LPIAQLYKLLKRWEE 31 (258)
Q Consensus 5 ~~i~~~~~~~r~------l~~~~l~~~l~~w~~ 31 (258)
.+|.+++..+|. .+-..|.+|-+.|+.
T Consensus 8 ~VIedVI~~vR~~F~~~GvDe~vL~eLk~~We~ 40 (43)
T d1nvpb_ 8 SVIEDVINDVRDIFLDDGVDEQVLMELKTLWEN 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 478889999886 688899999999973
No 4
>d1s28a_ d.198.1.1 (A:) AvrPphF ORF1, chaperone of AvrPphF ORF2 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Probab=13.84 E-value=1e+02 Score=22.47 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhC--CCCCCCCcceEEEecCc
Q 025081 84 VNEKAASLIECMVRDYM--QPVECSPLHEIVCFKNV 117 (258)
Q Consensus 84 ~~~~~~~~l~~l~~~~l--~p~~~lpfhEif~~d~~ 117 (258)
...-++.|++.+...|- .||....-+||+||.-.
T Consensus 3 MKn~FD~lVdgLakdY~mP~~P~Kkhe~EVYcF~f~ 38 (130)
T d1s28a_ 3 MKNSFDRLIDGLAKDYGMPGFPEKKHEHEVYCFEFK 38 (130)
T ss_dssp HHHHHHHHHHHHHHHHCCCBCCCCCSTTCCEEEEEG
T ss_pred hhhHHHHHHHHHHHhcCCCCCCCccccceEEEEEec
Confidence 45578899999998886 46888999999998743
No 5
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.39 E-value=89 Score=19.03 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=23.0
Q ss_pred hhHHHHHHHhcc------CChhHHHHHHHHHHH
Q 025081 5 RLICQAVQKVRD------LPIAQLYKLLKRWEE 31 (258)
Q Consensus 5 ~~i~~~~~~~r~------l~~~~l~~~l~~w~~ 31 (258)
.+|.+|+..+|. .+-..|.+|-..|+.
T Consensus 10 ~VI~dVI~~vR~dF~~~Gvde~vL~eLk~~We~ 42 (46)
T d1nh2b_ 10 IIVESVVNEVREDFENAGIDEQTLQDLKNIWQK 42 (46)
T ss_dssp HHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 578899999886 688899999999973
No 6
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=11.55 E-value=4.4 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=18.7
Q ss_pred HHHHHHHHcCcccCCCCCCcceeeeeccC
Q 025081 229 KAVTELQITGLIRMPTKRRPDFVQRVAFG 257 (258)
Q Consensus 229 rAv~EL~~lGfIK~~skrK~DhV~K~~W~ 257 (258)
.||.||--|||-+ .+.||. ++|+-|.
T Consensus 6 ~ai~eL~~MGF~e-~~A~~A--L~k~~wn 31 (43)
T d2g3qa1 6 LAVEELSGMGFTE-EEAHNA--LEKCNWD 31 (43)
T ss_dssp HHHHHHHTTTSCH-HHHHHH--HHHHTSC
T ss_pred HHHHHHHhcCCCH-HHHHHH--HHHcCCC
Confidence 5899999999988 355554 5565554
No 7
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.24 E-value=1.2e+02 Score=16.56 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=18.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHH
Q 025081 7 ICQAVQKVRDLPIAQLYKLLKRWE 30 (258)
Q Consensus 7 i~~~~~~~r~l~~~~l~~~l~~w~ 30 (258)
|.+|+..+..|.+..|-++.+-++
T Consensus 3 ~eeiv~aiekltvaelaelvk~le 26 (30)
T d1zavu1 3 IDEIIEAIEKLTVSELAELVKKLE 26 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567778888888888877777665
No 8
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.61 E-value=74 Score=20.54 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHH
Q 025081 218 PCEASIQARFCKAVTEL 234 (258)
Q Consensus 218 ~~e~~~qArF~rAv~EL 234 (258)
-|-.+.+.+|+.||..|
T Consensus 9 ~WT~elH~~Fv~Av~~l 25 (64)
T d1irza_ 9 LWTHELHNKFLAAVDHL 25 (64)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 48889999999999877
No 9
>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.91 E-value=1.2e+02 Score=19.92 Aligned_cols=30 Identities=3% Similarity=0.089 Sum_probs=24.3
Q ss_pred CcchHHHHHHHHHHhCCcccHHHHHHHHHh
Q 025081 158 SLHDTSILYNLAQEHGDHINLHDWYQSFKS 187 (258)
Q Consensus 158 s~Pd~silYkLY~EaG~lINlyDw~~AF~~ 187 (258)
.-|++..+|+-|...|..+++.++..=...
T Consensus 6 ~R~ei~~if~~ys~~~~~mt~~~f~~FL~~ 35 (94)
T d1qasa1 6 QRAEIDRAFEEAAGSAETLSVERLVTFLQH 35 (94)
T ss_dssp CCHHHHHHHHHHHTTSSSCBHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence 469999999999988889999887654444
No 10
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=7.86 E-value=65 Score=20.79 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCcccCCCCCCcceeee
Q 025081 226 RFCKAVTELQITGLIRMPTKRRPDFVQR 253 (258)
Q Consensus 226 rF~rAv~EL~~lGfIK~~skrK~DhV~K 253 (258)
---+|+.+|+..|+|. ...++.=+|..
T Consensus 38 tvr~Al~~L~~~Gli~-~~~g~G~~V~~ 64 (78)
T d3bwga1 38 TITKSLELLEQKGAIF-QVRGSGIFVRK 64 (78)
T ss_dssp HHHHHHHHHHHTTSEE-EETTTEEEECC
T ss_pred HHHHHHHHHHHCCcEE-EEcCcEEEEcc
Confidence 3468999999999999 36566656543
Done!