BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025083
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 4/130 (3%)
Query: 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYG 180
L MLRVGDL RSI FY K LGMKLLRT ++PE K +LA +GY E + V+EL Y++G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 181 VTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDG 240
V +Y G AY +A+S D+ ++ E + ++ GG +TR+ GP+ G T I DPDG
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDG 118
Query: 241 WKTVLVDNED 250
+K L++ +D
Sbjct: 119 YKIELIEEKD 128
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 33/124 (26%)
Query: 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNY 82
R LH + RVGDL R+I +YT+ GM+LLR + PE KYS AF+G+GPE V+ELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 83 GVTSYDIGTGFGHLAIATED---------------------------------DPDGYIF 109
GV Y++GT +GH+A++ ++ DPDGY
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKI 121
Query: 110 ELIQ 113
ELI+
Sbjct: 122 ELIE 125
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 71/120 (59%), Gaps = 28/120 (23%)
Query: 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYN 81
RR LH + RVGDLDR+IK+YTE GM++LRK DVPE+KY+ FLG+GPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 82 YGVTSYDIGTGFGHLAIATED----------------------------DPDGYIFELIQ 113
YGVTSY +GH+AI ED DPDGY EL+
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDESGFMAFVVDPDGYYIELLN 126
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 13/140 (9%)
Query: 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYG 180
+ M+RVGDL RSIKFY + LGMK+LR D PE K L LGY E +TVLEL Y+YG
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 181 VTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTK--ITSFVDP 238
VT Y AY +AI +DV +EL + + PI + + VDP
Sbjct: 69 VTSYKHDEAYGHIAIGVEDV-----------KELVADMRKHDVPIDYEDESGFMAFVVDP 117
Query: 239 DGWKTVLVDNEDFLKELQSE 258
DG+ L++ + +++ +++
Sbjct: 118 DGYYIELLNEKTMMEKAEAD 137
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 123/276 (44%), Gaps = 64/276 (23%)
Query: 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE-----------KYSNAFLGFGPE 70
RR LH V++VG+ +T ++Y + GM++LR + E K+S +GFGPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 71 QSYFVVELTYNYGVTSYDIGTGFGHLAIATE-----------------------DDPDGY 107
+FV ELTYNYGV Y +G F + +A+ + P GY
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDFMGITLASSQAVSNARKLEWPLTEVAEGVFETEAPGGY 145
Query: 108 IFELIQRG-PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAE 166
F L R P +P+ +V L V DL +S+ ++ LGMK+ + + A+LGYA
Sbjct: 146 KFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYENDEEKQ----RALLGYA- 200
Query: 167 EDQTTVLELAYSYGVTEYTKGNAYAQVAIST--------DDVYKSAE---VVNLVTQELG 215
D LEL G ++ A+ ++A S +D+ K + LV+ +
Sbjct: 201 -DNQCKLELQGVKGGVDHAA--AFGRIAFSCPQKELPDLEDLMKRENQKILTPLVSLDTP 257
Query: 216 GKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 251
GK T Q + DPDG + V +E F
Sbjct: 258 GKATVQ----------VVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 37/157 (23%)
Query: 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 168
L Q MLR+ D +S+ FY + LG+ LL+ +D P +K +L L Y +++
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 169 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 216
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 147
Query: 217 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 249
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 148 KFVKKPDDGKMKGL-----AFIQDPDGYWIEILNPNK 179
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 26/112 (23%)
Query: 17 PKKDKRRFL--HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGF------- 67
P + FL + R+ D +++ +YT G+ LL+K D P K+S FL +
Sbjct: 23 PDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIP 82
Query: 68 --GPEQSYF------VVELTYNYG-----VTSYDIGT----GFGHLAIATED 102
E++ + +ELT+N+G SY G GFGH+ IA D
Sbjct: 83 KDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPD 134
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 168
L Q MLRV D +S+ FY + LGM L++ D P +K +L L Y +++
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 94
Query: 169 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 216
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 95 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 150
Query: 217 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 249
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 151 KFVKKPDDGKMKGL-----AFIQDPDGYWIEILNPNK 182
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY------------ 73
+ RV D +++ +YT GM L++K D P K+S FL + +
Sbjct: 37 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 96
Query: 74 ---FVVELTYNYG-----VTSYDIGT----GFGHLAIATED 102
+ELT+N+G SY G GFGH+ IA D
Sbjct: 97 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPD 137
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 168
L Q MLRV D +S+ FY + LGM L++ D P +K +L L Y +++
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 169 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 216
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 146
Query: 217 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 249
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 147 KFVKKPDDGKMKGL-----AFIQDPDGYWIEILNPNK 178
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY------------ 73
+ RV D +++ +YT GM L++K D P K+S FL + +
Sbjct: 33 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 92
Query: 74 ---FVVELTYNYG-----VTSYDIGT----GFGHLAIATED 102
+ELT+N+G SY G GFGH+ IA D
Sbjct: 93 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPD 133
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 168
L + MLRV D +S+ FY + LGM L++ D P +K +L L Y +++
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 169 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 216
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 146
Query: 217 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 249
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 147 KFVKKPDDGKMKGL-----AFIQDPDGYWIQILNPNK 178
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 24/99 (24%)
Query: 28 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY-------------- 73
+ RV D +++ +YT GM L++K D P K+S FL + +
Sbjct: 35 MLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSR 94
Query: 74 -FVVELTYNYG-----VTSYDIGT----GFGHLAIATED 102
+ELT+N+G SY G GFGH+ IA D
Sbjct: 95 KATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPD 133
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE 58
H Y D D KYY E FG L + + PE+
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQ 44
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE 58
H Y D D KYY E FG L + + PE+
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQ 44
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT 85
H + T +Y E G E+LR+ PE+ L G ++ + +
Sbjct: 8 HVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP-ARP 66
Query: 86 SYDIGTGFGHLAIATEDDPDGYIFELIQRGPTPEPLCQVMLRVGDL-GRSIKFYEKALGM 144
SY G HLA E + F L ++G EP LRV D G+ F+ G+
Sbjct: 67 SYPEALGLRHLAFKVEHIEEVIAF-LNEQGIETEP-----LRVDDFTGKKXTFFFDPDGL 120
Query: 145 KL 146
L
Sbjct: 121 PL 122
>pdb|2R5V|A Chain A, Hydroxymandelate Synthase Crystal Structure
pdb|2R5V|B Chain B, Hydroxymandelate Synthase Crystal Structure
Length = 357
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 124 VMLRVGDLGRSIKFYEKALGMKLL 147
+ L GDLG ++++YE+ALG + +
Sbjct: 164 ICLNAGDLGPTVEYYERALGFRQI 187
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 129 GDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLG------YAEED-QTTVLEL 175
G +G + KALG KL+ T+ SPE LG Y+ ED VLEL
Sbjct: 151 GGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLEL 204
>pdb|2QNT|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Agrobacterium Tumefaciens Str. C58
Length = 141
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 25/121 (20%)
Query: 128 VGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAY--------SY 179
V D+ RS FY LG+K+L S L G+A + ++ E + +Y
Sbjct: 16 VRDINRSKSFYRDRLGLKILEDFGS----FVLFETGFAIHEGRSLEETIWRTSSDAQEAY 71
Query: 180 GVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPD 239
G +A V + D+ E+++ + ++ G+ ++ F DPD
Sbjct: 72 GRRNXLLYFEHADVDAAFQDIAPHVELIHPLERQAWGQ-------------RVFRFYDPD 118
Query: 240 G 240
G
Sbjct: 119 G 119
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 59 KYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAI--------ATEDDPDGYIFE 110
KYS FL + + +L T Y+IGTG GHL T + D ++F
Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFN 65
Query: 111 L 111
L
Sbjct: 66 L 66
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 60 YSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHL 96
+S A GFG E + +V+L V SY+ TG H+
Sbjct: 70 HSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,795,254
Number of Sequences: 62578
Number of extensions: 337655
Number of successful extensions: 920
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 31
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)