Query 025083
Match_columns 258
No_of_seqs 236 out of 2120
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 02:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 4.2E-42 9.1E-47 288.3 30.3 251 2-256 3-286 (286)
2 KOG2943 Predicted glyoxalase [ 100.0 3E-38 6.4E-43 243.7 18.8 235 12-256 6-278 (299)
3 TIGR02295 HpaD 3,4-dihydroxyph 100.0 1.2E-28 2.7E-33 207.9 25.5 207 20-249 1-257 (294)
4 TIGR03211 catechol_2_3 catecho 100.0 2E-28 4.3E-33 207.4 25.3 206 21-248 2-265 (303)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 2.8E-27 6.1E-32 198.8 24.8 204 21-248 1-263 (286)
6 PLN02367 lactoylglutathione ly 99.9 4.5E-21 9.8E-26 152.5 15.6 130 118-253 73-227 (233)
7 COG2514 Predicted ring-cleavag 99.9 1.1E-19 2.4E-24 144.9 19.4 167 16-199 3-242 (265)
8 PRK10291 glyoxalase I; Provisi 99.9 2.6E-20 5.7E-25 138.1 14.4 123 125-251 1-123 (129)
9 TIGR00068 glyox_I lactoylgluta 99.8 8.1E-20 1.7E-24 139.0 16.2 132 116-251 13-144 (150)
10 PLN03042 Lactoylglutathione ly 99.8 1.7E-19 3.6E-24 140.8 15.5 129 118-252 25-178 (185)
11 cd08358 Glo_EDI_BRP_like_21 Th 99.8 5.3E-19 1.2E-23 129.5 15.1 114 120-247 2-126 (127)
12 cd07233 Glyoxalase_I Glyoxalas 99.8 1E-18 2.3E-23 127.6 15.5 120 121-246 1-121 (121)
13 PLN02300 lactoylglutathione ly 99.8 1.2E-18 2.5E-23 146.4 16.1 130 117-250 21-150 (286)
14 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 2.1E-18 4.5E-23 129.9 14.9 122 119-248 2-141 (142)
15 cd07257 THT_oxygenase_C The C- 99.8 5.7E-19 1.2E-23 134.7 11.9 122 120-249 1-126 (153)
16 cd07243 2_3_CTD_C C-terminal d 99.8 2.7E-18 5.8E-23 129.5 14.9 121 118-248 4-125 (143)
17 cd08342 HPPD_N_like N-terminal 99.8 2.8E-18 6.1E-23 128.4 14.5 122 121-253 1-128 (136)
18 cd08360 MhqB_like_C C-terminal 99.8 6.3E-18 1.4E-22 126.2 15.2 122 118-250 1-122 (134)
19 TIGR01263 4HPPD 4-hydroxypheny 99.8 4.8E-17 1E-21 140.4 21.6 190 22-222 1-267 (353)
20 PRK11478 putative lyase; Provi 99.8 8.5E-18 1.8E-22 124.4 14.7 121 119-248 5-129 (129)
21 TIGR03645 glyox_marine lactoyl 99.8 7.1E-18 1.5E-22 129.9 14.7 125 119-250 3-153 (162)
22 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 9.5E-18 2E-22 123.1 13.9 119 120-246 1-125 (125)
23 cd07258 PpCmtC_C C-terminal do 99.8 1.4E-17 3.1E-22 125.1 14.1 115 122-249 1-115 (141)
24 cd07237 BphC1-RGP6_C_like C-te 99.8 3.3E-17 7.1E-22 125.2 15.2 125 117-250 6-133 (154)
25 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 4.4E-17 9.6E-22 119.4 15.1 120 119-247 2-125 (125)
26 cd07256 HPCD_C_class_II C-term 99.8 4.5E-17 9.7E-22 125.4 15.3 122 118-249 1-124 (161)
27 cd07265 2_3_CTD_N N-terminal d 99.8 3.5E-17 7.6E-22 120.0 13.6 116 118-249 2-120 (122)
28 cd07247 SgaA_N_like N-terminal 99.7 9.3E-17 2E-21 116.2 14.5 114 121-247 1-114 (114)
29 PRK04101 fosfomycin resistance 99.7 1.2E-16 2.7E-21 119.9 15.2 117 118-249 2-120 (139)
30 TIGR03081 metmalonyl_epim meth 99.7 5.2E-17 1.1E-21 119.8 12.9 119 120-247 1-128 (128)
31 cd08343 ED_TypeI_classII_C C-t 99.7 3E-16 6.6E-21 116.5 14.8 118 122-249 1-118 (131)
32 cd07239 BphC5-RK37_C_like C-te 99.7 2.3E-16 5E-21 119.1 14.3 118 118-250 2-119 (144)
33 cd09014 BphC-JF8_C_like C-term 99.7 3.3E-16 7.2E-21 121.1 15.3 124 118-248 4-127 (166)
34 cd09013 BphC-JF8_N_like N-term 99.7 3.2E-16 7E-21 114.7 14.4 115 118-248 4-118 (121)
35 cd08346 PcpA_N_like N-terminal 99.7 3.6E-16 7.8E-21 114.8 14.6 123 120-246 1-126 (126)
36 cd08363 FosB FosB, a fosfomyci 99.7 2.4E-16 5.2E-21 117.1 13.4 117 121-252 1-119 (131)
37 cd08351 ChaP_like ChaP, an enz 99.7 4E-16 8.6E-21 114.6 13.8 112 118-248 2-121 (123)
38 cd07252 BphC1-RGP6_N_like N-te 99.7 3.5E-16 7.6E-21 114.4 13.3 116 119-249 1-118 (120)
39 PF00903 Glyoxalase: Glyoxalas 99.7 8E-17 1.7E-21 118.3 10.0 121 120-245 1-128 (128)
40 cd08361 PpCmtC_N N-terminal do 99.7 2.2E-16 4.8E-21 116.2 12.2 111 119-249 5-120 (124)
41 cd08347 PcpA_C_like C-terminal 99.7 5.3E-16 1.1E-20 118.7 14.5 117 120-249 1-121 (157)
42 cd08364 FosX FosX, a fosfomyci 99.7 8.7E-16 1.9E-20 114.1 15.0 119 118-249 2-123 (131)
43 cd07266 HPCD_N_class_II N-term 99.7 4.3E-16 9.3E-21 113.9 13.0 114 118-248 2-118 (121)
44 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 7.6E-16 1.6E-20 112.8 14.2 117 119-247 2-124 (125)
45 cd08355 Glo_EDI_BRP_like_14 Th 99.7 1.7E-15 3.7E-20 110.9 16.0 115 124-247 3-121 (122)
46 cd07263 Glo_EDI_BRP_like_16 Th 99.7 7.9E-16 1.7E-20 111.6 14.1 117 123-247 1-119 (119)
47 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 3.3E-16 7.1E-21 112.5 11.9 113 121-245 1-114 (114)
48 cd09011 Glo_EDI_BRP_like_23 Th 99.7 5.2E-16 1.1E-20 113.4 13.0 113 120-248 2-119 (120)
49 PRK06724 hypothetical protein; 99.7 5.7E-16 1.2E-20 114.4 13.2 112 117-248 4-123 (128)
50 cd07249 MMCE Methylmalonyl-CoA 99.7 1E-15 2.3E-20 112.7 14.1 119 121-247 1-128 (128)
51 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 2.1E-15 4.6E-20 111.3 15.2 117 120-248 1-128 (128)
52 cd07255 Glo_EDI_BRP_like_12 Th 99.7 2.2E-15 4.7E-20 110.7 15.0 119 119-249 1-120 (125)
53 cd07240 ED_TypeI_classII_N N-t 99.7 2.6E-15 5.7E-20 108.8 14.7 114 119-248 1-114 (117)
54 cd08358 Glo_EDI_BRP_like_21 Th 99.7 8E-16 1.7E-20 112.7 11.7 92 22-113 1-126 (127)
55 cd08348 BphC2-C3-RGP6_C_like T 99.7 3.3E-15 7.2E-20 111.2 15.4 123 120-251 1-123 (134)
56 cd07264 Glo_EDI_BRP_like_15 Th 99.7 4E-15 8.6E-20 109.3 14.4 115 121-248 1-125 (125)
57 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 7.3E-15 1.6E-19 107.3 15.7 115 124-247 5-121 (122)
58 cd08359 Glo_EDI_BRP_like_22 Th 99.7 4.8E-15 1E-19 108.0 14.2 111 123-247 4-119 (119)
59 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 5.2E-15 1.1E-19 106.7 14.0 109 123-248 3-111 (112)
60 KOG2944 Glyoxalase [Carbohydra 99.7 4.4E-16 9.5E-21 113.8 7.9 120 120-249 22-169 (170)
61 cd08362 BphC5-RrK37_N_like N-t 99.7 3.9E-15 8.5E-20 108.5 13.0 113 119-249 2-118 (120)
62 PF12681 Glyoxalase_2: Glyoxal 99.6 4.2E-15 9.1E-20 106.3 12.7 108 126-246 1-108 (108)
63 PLN02367 lactoylglutathione ly 99.6 2.6E-15 5.7E-20 119.7 12.7 95 22-116 74-224 (233)
64 cd07267 THT_Oxygenase_N N-term 99.6 7.1E-15 1.5E-19 106.3 13.6 109 119-248 2-110 (113)
65 cd07262 Glo_EDI_BRP_like_19 Th 99.6 8.1E-15 1.8E-19 107.4 13.7 118 121-247 1-123 (123)
66 cd08354 Glo_EDI_BRP_like_13 Th 99.6 8E-15 1.7E-19 107.1 13.5 114 121-248 1-122 (122)
67 cd07261 Glo_EDI_BRP_like_11 Th 99.6 7.9E-15 1.7E-19 106.0 13.2 112 124-247 2-114 (114)
68 cd07244 FosA FosA, a Fosfomyci 99.6 7.7E-15 1.7E-19 107.4 13.3 109 120-249 1-111 (121)
69 cd08349 BLMA_like Bleomycin bi 99.6 1.6E-14 3.5E-19 103.8 13.8 109 125-247 3-112 (112)
70 cd08345 Fosfomycin_RP Fosfomyc 99.6 7.7E-15 1.7E-19 105.8 12.1 109 123-248 1-111 (113)
71 cd09012 Glo_EDI_BRP_like_24 Th 99.6 1E-14 2.2E-19 107.2 12.2 113 121-247 1-123 (124)
72 KOG2943 Predicted glyoxalase [ 99.6 3.5E-15 7.7E-20 116.2 9.7 119 117-248 14-143 (299)
73 cd07235 MRD Mitomycin C resist 99.6 1.7E-14 3.7E-19 105.6 12.9 114 121-247 1-122 (122)
74 cd07254 Glo_EDI_BRP_like_20 Th 99.6 3.6E-14 7.8E-19 103.6 14.4 114 122-248 3-117 (120)
75 cd08357 Glo_EDI_BRP_like_18 Th 99.6 1E-14 2.2E-19 107.0 11.6 113 123-247 2-124 (125)
76 PLN02875 4-hydroxyphenylpyruva 99.6 1.3E-13 2.7E-18 118.8 19.3 189 24-222 1-295 (398)
77 cd08350 BLMT_like BLMT, a bleo 99.6 3.7E-14 8E-19 103.6 13.6 108 123-248 5-119 (120)
78 cd06587 Glo_EDI_BRP_like This 99.6 3.1E-14 6.8E-19 101.3 12.9 112 123-245 1-112 (112)
79 TIGR00068 glyox_I lactoylgluta 99.6 3.8E-14 8.2E-19 107.7 13.8 108 10-117 4-144 (150)
80 cd08344 MhqB_like_N N-terminal 99.6 4.1E-14 8.8E-19 102.1 13.1 106 120-248 2-109 (112)
81 PLN03042 Lactoylglutathione ly 99.6 3E-14 6.6E-19 111.2 13.0 95 21-115 25-175 (185)
82 COG3324 Predicted enzyme relat 99.6 8.4E-14 1.8E-18 100.5 13.5 121 117-249 6-126 (127)
83 TIGR03211 catechol_2_3 catecho 99.5 1.2E-13 2.5E-18 117.2 13.4 115 119-250 3-120 (303)
84 TIGR02295 HpaD 3,4-dihydroxyph 99.5 1.8E-13 3.9E-18 115.5 14.2 113 118-250 2-117 (294)
85 PRK10291 glyoxalase I; Provisi 99.5 1.5E-13 3.2E-18 101.7 11.9 91 28-118 1-124 (129)
86 cd08356 Glo_EDI_BRP_like_17 Th 99.5 3E-13 6.5E-18 97.8 12.4 104 124-247 5-113 (113)
87 cd07251 Glo_EDI_BRP_like_10 Th 99.5 4.6E-13 1E-17 97.5 12.5 110 124-247 2-120 (121)
88 PF13669 Glyoxalase_4: Glyoxal 99.5 2.1E-13 4.5E-18 98.0 10.2 95 122-222 1-97 (109)
89 TIGR03213 23dbph12diox 2,3-dih 99.5 4.4E-13 9.6E-18 112.7 12.9 116 119-249 2-119 (286)
90 cd07241 Glo_EDI_BRP_like_3 Thi 99.4 2E-12 4.3E-17 94.6 11.0 77 23-102 1-80 (125)
91 cd08353 Glo_EDI_BRP_like_7 Thi 99.4 2.9E-12 6.2E-17 96.3 11.5 91 21-114 1-141 (142)
92 cd07233 Glyoxalase_I Glyoxalas 99.4 4E-12 8.6E-17 92.6 11.5 79 24-102 1-80 (121)
93 TIGR03645 glyox_marine lactoyl 99.4 5.3E-12 1.1E-16 97.2 11.7 92 22-116 3-153 (162)
94 COG2514 Predicted ring-cleavag 99.4 1.3E-11 2.8E-16 99.0 13.6 120 117-249 7-127 (265)
95 PRK11478 putative lyase; Provi 99.4 7.6E-12 1.7E-16 92.3 11.2 79 20-102 3-85 (129)
96 cd09013 BphC-JF8_N_like N-term 99.4 1.3E-11 2.8E-16 90.2 11.0 82 20-114 3-118 (121)
97 cd07243 2_3_CTD_C C-terminal d 99.3 1.6E-11 3.4E-16 92.6 11.5 73 21-102 4-77 (143)
98 cd07255 Glo_EDI_BRP_like_12 Th 99.3 3.3E-11 7.2E-16 88.3 12.0 86 22-115 1-120 (125)
99 cd08360 MhqB_like_C C-terminal 99.3 2.8E-11 6.1E-16 90.1 11.4 71 22-102 2-72 (134)
100 cd07256 HPCD_C_class_II C-term 99.3 3.5E-11 7.5E-16 92.5 11.9 72 22-102 2-73 (161)
101 PRK04101 fosfomycin resistance 99.3 3E-11 6.5E-16 90.6 11.1 72 20-101 1-72 (139)
102 cd07265 2_3_CTD_N N-terminal d 99.3 2.8E-11 6E-16 88.5 10.5 70 21-102 2-71 (122)
103 cd07257 THT_oxygenase_C The C- 99.3 1.6E-11 3.4E-16 93.7 8.7 73 23-102 1-77 (153)
104 cd08347 PcpA_C_like C-terminal 99.3 8E-11 1.7E-15 90.1 11.7 87 23-115 1-121 (157)
105 cd08342 HPPD_N_like N-terminal 99.3 8.8E-11 1.9E-15 87.7 11.6 87 24-116 1-125 (136)
106 TIGR03081 metmalonyl_epim meth 99.3 4.4E-11 9.6E-16 87.9 9.7 76 23-102 1-82 (128)
107 cd08346 PcpA_N_like N-terminal 99.3 7.9E-11 1.7E-15 86.1 10.9 80 23-102 1-83 (126)
108 cd07250 HPPD_C_like C-terminal 99.2 7.6E-11 1.6E-15 93.1 10.9 99 119-223 2-113 (191)
109 cd08352 Glo_EDI_BRP_like_1 Thi 99.2 1.2E-10 2.7E-15 84.9 11.0 77 22-102 2-82 (125)
110 COG3565 Predicted dioxygenase 99.2 1.7E-10 3.7E-15 80.0 10.7 122 119-252 3-133 (138)
111 cd08348 BphC2-C3-RGP6_C_like T 99.2 2E-10 4.4E-15 85.3 12.0 89 23-116 1-122 (134)
112 cd09014 BphC-JF8_C_like C-term 99.2 1.9E-10 4E-15 88.9 12.1 77 20-102 3-79 (166)
113 cd07237 BphC1-RGP6_C_like C-te 99.2 1.2E-10 2.6E-15 88.9 10.5 74 21-102 7-83 (154)
114 PRK06724 hypothetical protein; 99.2 1.8E-10 3.9E-15 85.0 10.4 33 18-50 2-37 (128)
115 cd07266 HPCD_N_class_II N-term 99.2 2.5E-10 5.3E-15 83.2 10.7 33 20-52 1-33 (121)
116 PF00903 Glyoxalase: Glyoxalas 99.2 2.5E-10 5.4E-15 83.5 10.3 32 23-54 1-32 (128)
117 cd07240 ED_TypeI_classII_N N-t 99.2 2.9E-10 6.4E-15 82.1 10.5 79 22-114 1-114 (117)
118 cd08364 FosX FosX, a fosfomyci 99.2 3.6E-10 7.8E-15 83.8 11.0 33 20-52 1-33 (131)
119 KOG2944 Glyoxalase [Carbohydra 99.2 3.7E-11 7.9E-16 88.2 5.3 94 21-114 20-168 (170)
120 cd07267 THT_Oxygenase_N N-term 99.2 2.9E-10 6.2E-15 82.0 10.0 79 21-114 1-110 (113)
121 cd08363 FosB FosB, a fosfomyci 99.2 1.9E-10 4.1E-15 85.3 9.2 69 24-102 1-69 (131)
122 cd08361 PpCmtC_N N-terminal do 99.2 2.9E-10 6.4E-15 83.4 10.1 33 20-52 3-35 (124)
123 cd07258 PpCmtC_C C-terminal do 99.2 3E-10 6.5E-15 85.3 10.2 66 25-102 1-66 (141)
124 KOG0638 4-hydroxyphenylpyruvat 99.2 7E-11 1.5E-15 96.1 6.4 194 21-224 15-293 (381)
125 cd07242 Glo_EDI_BRP_like_6 Thi 99.1 6.7E-10 1.4E-14 81.7 11.0 72 23-102 1-78 (128)
126 cd06588 PhnB_like Escherichia 99.1 2.1E-09 4.6E-14 79.3 13.3 114 125-246 4-128 (128)
127 cd08351 ChaP_like ChaP, an enz 99.1 7.4E-10 1.6E-14 81.1 10.6 32 20-51 1-32 (123)
128 cd07252 BphC1-RGP6_N_like N-te 99.1 5.8E-10 1.3E-14 81.3 10.0 67 22-102 1-67 (120)
129 cd07249 MMCE Methylmalonyl-CoA 99.1 6.4E-10 1.4E-14 81.5 9.8 75 24-102 1-82 (128)
130 COG3607 Predicted lactoylgluta 99.1 1.5E-09 3.3E-14 76.6 10.5 117 120-247 3-126 (133)
131 cd07253 Glo_EDI_BRP_like_2 Thi 99.1 1.1E-09 2.3E-14 79.9 10.3 74 21-102 1-77 (125)
132 cd08343 ED_TypeI_classII_C C-t 99.1 1.4E-09 3E-14 80.6 10.8 69 25-102 1-69 (131)
133 COG2764 PhnB Uncharacterized p 99.1 6.8E-09 1.5E-13 76.3 14.2 116 125-249 5-132 (136)
134 COG3185 4-hydroxyphenylpyruvat 99.1 7.1E-09 1.5E-13 86.1 15.7 189 21-223 20-275 (363)
135 cd07263 Glo_EDI_BRP_like_16 Th 99.1 9.4E-10 2E-14 79.4 9.4 75 26-102 1-77 (119)
136 cd07245 Glo_EDI_BRP_like_9 Thi 99.1 6.2E-10 1.3E-14 79.5 8.2 73 24-102 1-74 (114)
137 cd07239 BphC5-RK37_C_like C-te 99.1 1.6E-09 3.4E-14 81.7 10.5 67 22-102 3-69 (144)
138 cd08362 BphC5-RrK37_N_like N-t 99.1 1.8E-09 3.8E-14 78.5 10.3 31 22-52 2-32 (120)
139 cd07244 FosA FosA, a Fosfomyci 99.1 2.3E-09 4.9E-14 78.3 10.3 80 23-115 1-111 (121)
140 COG0346 GloA Lactoylglutathion 99.0 1.2E-09 2.5E-14 80.0 8.4 120 120-247 2-138 (138)
141 PF13669 Glyoxalase_4: Glyoxal 99.0 1.4E-09 3E-14 78.0 8.3 96 25-149 1-96 (109)
142 cd08345 Fosfomycin_RP Fosfomyc 99.0 2.8E-09 6E-14 76.6 9.3 28 26-53 1-28 (113)
143 cd07247 SgaA_N_like N-terminal 99.0 3.5E-09 7.5E-14 76.2 9.9 71 24-102 1-71 (114)
144 TIGR01263 4HPPD 4-hydroxypheny 99.0 3.6E-08 7.8E-13 85.3 15.5 121 120-249 2-128 (353)
145 cd09011 Glo_EDI_BRP_like_23 Th 98.9 7.3E-09 1.6E-13 75.4 8.9 30 22-51 1-30 (120)
146 cd07262 Glo_EDI_BRP_like_19 Th 98.9 1.3E-08 2.8E-13 74.3 10.1 71 24-102 1-74 (123)
147 cd07254 Glo_EDI_BRP_like_20 Th 98.9 1.9E-08 4.2E-13 73.0 10.6 28 25-52 3-30 (120)
148 cd08354 Glo_EDI_BRP_like_13 Th 98.9 1.8E-08 3.9E-13 73.2 10.3 70 24-101 1-76 (122)
149 cd06587 Glo_EDI_BRP_like This 98.9 1.5E-08 3.2E-13 71.6 9.5 71 26-102 1-71 (112)
150 cd07264 Glo_EDI_BRP_like_15 Th 98.9 2.1E-08 4.7E-13 73.2 9.8 29 24-52 1-29 (125)
151 cd07250 HPPD_C_like C-terminal 98.9 3.4E-08 7.3E-13 78.0 11.1 79 22-102 2-93 (191)
152 cd08355 Glo_EDI_BRP_like_14 Th 98.8 8.2E-08 1.8E-12 69.9 12.0 72 27-102 3-78 (122)
153 cd07246 Glo_EDI_BRP_like_8 Thi 98.8 7E-08 1.5E-12 70.0 11.4 83 27-113 5-121 (122)
154 cd08357 Glo_EDI_BRP_like_18 Th 98.8 3.1E-08 6.7E-13 72.3 9.0 28 25-52 1-28 (125)
155 cd08359 Glo_EDI_BRP_like_22 Th 98.8 5E-08 1.1E-12 70.6 9.5 28 25-52 3-30 (119)
156 cd08344 MhqB_like_N N-terminal 98.8 6E-08 1.3E-12 69.6 9.5 30 22-52 1-30 (112)
157 PF12681 Glyoxalase_2: Glyoxal 98.8 5.7E-08 1.2E-12 69.0 9.1 66 29-102 1-66 (108)
158 PRK01037 trmD tRNA (guanine-N( 98.7 1.1E-07 2.5E-12 79.7 11.1 109 119-248 246-354 (357)
159 cd07261 Glo_EDI_BRP_like_11 Th 98.7 1.2E-07 2.6E-12 68.1 9.9 67 27-102 2-69 (114)
160 cd09012 Glo_EDI_BRP_like_24 Th 98.7 1.2E-07 2.5E-12 69.4 9.7 27 25-52 2-28 (124)
161 cd08349 BLMA_like Bleomycin bi 98.7 2E-07 4.3E-12 66.5 9.8 66 28-102 3-68 (112)
162 cd07235 MRD Mitomycin C resist 98.7 1.8E-07 3.9E-12 68.1 9.1 28 24-52 1-28 (122)
163 cd07238 Glo_EDI_BRP_like_5 Thi 98.7 2.7E-07 5.8E-12 66.1 9.5 77 26-114 3-111 (112)
164 COG3324 Predicted enzyme relat 98.6 7E-07 1.5E-11 64.7 10.4 38 17-54 3-40 (127)
165 PF14506 CppA_N: CppA N-termin 98.6 2.5E-06 5.5E-11 60.2 12.0 114 122-251 2-117 (125)
166 PF14506 CppA_N: CppA N-termin 98.5 2.1E-06 4.4E-11 60.7 10.1 84 25-114 2-104 (125)
167 cd08350 BLMT_like BLMT, a bleo 98.5 1.7E-06 3.7E-11 62.8 9.7 27 26-53 5-31 (120)
168 PRK10148 hypothetical protein; 98.4 1.6E-05 3.5E-10 59.9 14.4 115 125-248 6-141 (147)
169 KOG0638 4-hydroxyphenylpyruvat 98.4 5.6E-07 1.2E-11 73.7 5.7 128 118-253 15-153 (381)
170 COG0346 GloA Lactoylglutathion 98.4 3.6E-06 7.7E-11 61.2 9.4 33 22-54 1-33 (138)
171 cd07251 Glo_EDI_BRP_like_10 Th 98.4 5E-06 1.1E-10 60.0 9.9 26 27-52 2-27 (121)
172 cd08356 Glo_EDI_BRP_like_17 Th 98.2 6.8E-06 1.5E-10 59.1 8.1 25 27-52 5-29 (113)
173 PLN02875 4-hydroxyphenylpyruva 98.2 9E-05 2E-09 64.5 14.3 122 121-250 1-153 (398)
174 PF13468 Glyoxalase_3: Glyoxal 98.1 4.4E-05 9.5E-10 59.4 10.5 115 24-142 1-175 (175)
175 COG3565 Predicted dioxygenase 98.0 2.4E-05 5.3E-10 54.7 6.2 32 22-53 3-34 (138)
176 PF14696 Glyoxalase_5: Hydroxy 97.9 0.00021 4.5E-09 53.0 10.5 117 119-250 8-128 (139)
177 PF13468 Glyoxalase_3: Glyoxal 97.9 6.5E-05 1.4E-09 58.4 7.9 89 121-217 1-101 (175)
178 cd06588 PhnB_like Escherichia 97.5 0.002 4.4E-08 47.2 10.9 26 28-53 4-30 (128)
179 PRK01037 trmD tRNA (guanine-N( 97.5 0.00056 1.2E-08 57.9 7.8 27 23-49 247-273 (357)
180 COG3607 Predicted lactoylgluta 97.4 0.0013 2.9E-08 46.9 8.2 31 22-53 2-32 (133)
181 COG3185 4-hydroxyphenylpyruvat 97.4 0.00047 1E-08 57.9 6.7 79 21-102 165-255 (363)
182 PF06983 3-dmu-9_3-mt: 3-demet 97.2 0.021 4.6E-07 41.1 12.7 99 129-246 11-116 (116)
183 PF14507 CppA_C: CppA C-termin 96.5 0.012 2.5E-07 40.9 6.0 94 121-245 6-100 (101)
184 PF15067 FAM124: FAM124 family 96.1 0.094 2E-06 41.9 10.1 106 119-245 127-235 (236)
185 COG2764 PhnB Uncharacterized p 96.1 0.17 3.7E-06 37.4 10.8 30 28-57 5-35 (136)
186 PF15067 FAM124: FAM124 family 95.4 0.29 6.4E-06 39.2 10.4 30 23-52 128-159 (236)
187 PF14696 Glyoxalase_5: Hydroxy 95.1 0.14 3.1E-06 38.0 7.2 73 21-102 7-83 (139)
188 PRK10148 hypothetical protein; 94.7 1.4 3E-05 33.1 12.2 25 28-52 6-31 (147)
189 PF06185 YecM: YecM protein; 93.0 1.4 3E-05 34.3 9.2 77 22-102 33-115 (185)
190 PRK11700 hypothetical protein; 92.9 1.6 3.4E-05 34.0 9.4 77 22-102 38-120 (187)
191 cd07268 Glo_EDI_BRP_like_4 Thi 91.7 2.9 6.2E-05 31.2 9.1 24 24-47 2-25 (149)
192 PF14507 CppA_C: CppA C-termin 87.4 0.32 6.9E-06 33.8 1.3 23 23-46 5-27 (101)
193 COG3865 Uncharacterized protei 80.0 22 0.00048 26.5 12.7 101 129-247 14-123 (151)
194 PF06185 YecM: YecM protein; 74.3 40 0.00086 26.4 8.8 28 118-145 32-59 (185)
195 COG0051 RpsJ Ribosomal protein 72.0 9.6 0.00021 26.7 4.4 48 194-242 12-59 (104)
196 PF06983 3-dmu-9_3-mt: 3-demet 69.0 39 0.00085 24.1 9.3 80 32-141 11-92 (116)
197 PTZ00039 40S ribosomal protein 68.3 27 0.00057 25.1 6.1 45 196-241 27-71 (115)
198 COG3102 Uncharacterized protei 63.4 36 0.00077 26.1 6.2 79 22-104 38-122 (185)
199 cd04895 ACT_ACR_1 ACT domain-c 61.2 29 0.00062 22.6 4.8 51 193-243 4-55 (72)
200 PF02208 Sorb: Sorbin homologo 57.7 4.9 0.00011 23.3 0.6 24 119-142 10-33 (47)
201 PF13670 PepSY_2: Peptidase pr 57.7 38 0.00083 22.4 5.2 45 199-249 30-74 (83)
202 cd07268 Glo_EDI_BRP_like_4 Thi 53.2 95 0.0021 23.3 9.3 24 121-144 2-25 (149)
203 cd04883 ACT_AcuB C-terminal AC 52.9 32 0.00069 21.6 4.1 28 190-221 42-71 (72)
204 TIGR01046 S10_Arc_S20_Euk ribo 52.4 33 0.00071 23.8 4.2 44 197-241 12-55 (99)
205 cd04897 ACT_ACR_3 ACT domain-c 49.6 58 0.0013 21.3 4.8 52 193-244 4-56 (75)
206 cd04882 ACT_Bt0572_2 C-termina 48.2 40 0.00086 20.5 3.9 26 189-218 39-64 (65)
207 PRK12271 rps10p 30S ribosomal 46.3 47 0.001 23.2 4.3 43 198-241 14-56 (102)
208 PHA02754 hypothetical protein; 40.9 59 0.0013 20.0 3.5 50 198-249 14-63 (67)
209 CHL00135 rps10 ribosomal prote 39.5 61 0.0013 22.6 3.9 46 195-241 16-61 (101)
210 PF07063 DUF1338: Domain of un 38.2 31 0.00067 29.3 2.8 30 186-219 181-216 (302)
211 PF09162 Tap-RNA_bind: Tap, RN 34.9 94 0.002 21.1 4.2 15 192-207 46-60 (88)
212 COG5397 Uncharacterized conser 34.3 39 0.00085 28.2 2.6 51 193-249 161-212 (349)
213 cd04436 DEP_fRgd2 DEP (Disheve 33.2 16 0.00034 24.5 0.2 38 7-52 29-66 (84)
214 PF14527 LAGLIDADG_WhiA: WhiA 32.3 1.1E+02 0.0024 20.9 4.3 44 191-239 22-65 (93)
215 cd04885 ACT_ThrD-I Tandem C-te 32.0 1.2E+02 0.0025 19.0 4.2 29 189-218 38-66 (68)
216 PRK00596 rpsJ 30S ribosomal pr 31.2 97 0.0021 21.6 3.9 43 198-241 16-58 (102)
217 PF02952 Fucose_iso_C: L-fucos 30.6 69 0.0015 23.5 3.4 27 24-50 113-139 (142)
218 TIGR01049 rpsJ_bact ribosomal 29.1 93 0.002 21.5 3.5 44 197-241 12-55 (99)
219 KOG4657 Uncharacterized conser 28.2 48 0.001 26.7 2.1 21 32-52 145-165 (246)
220 PF07494 Reg_prop: Two compone 25.8 85 0.0018 15.2 2.1 13 231-243 7-19 (24)
221 KOG4657 Uncharacterized conser 25.4 1.9E+02 0.004 23.5 4.9 21 129-149 145-165 (246)
222 PF00583 Acetyltransf_1: Acety 24.7 46 0.001 21.1 1.4 33 13-48 50-83 (83)
223 PF00585 Thr_dehydrat_C: C-ter 23.7 1.4E+02 0.003 20.2 3.6 31 188-219 49-79 (91)
224 PF13176 TPR_7: Tetratricopept 23.5 66 0.0014 17.2 1.6 17 31-47 12-28 (36)
225 PF08445 FR47: FR47-like prote 23.2 1.7E+02 0.0036 19.4 3.9 25 124-149 58-82 (86)
226 PF13225 DUF4033: Domain of un 22.5 1.2E+02 0.0025 20.5 2.9 21 134-154 49-69 (86)
227 cd04906 ACT_ThrD-I_1 First of 22.2 1.8E+02 0.004 19.1 3.9 28 189-220 40-71 (85)
228 PF14133 DUF4300: Domain of un 22.0 2.7E+02 0.0057 23.1 5.4 42 198-244 144-185 (250)
229 TIGR03884 sel_bind_Methan sele 21.8 1.7E+02 0.0036 19.2 3.4 28 193-220 20-47 (74)
230 cd04926 ACT_ACR_4 C-terminal 21.4 2.3E+02 0.0049 17.9 5.4 50 193-242 4-54 (72)
231 cd00034 ChSh Chromo Shadow Dom 21.1 20 0.00043 21.8 -0.9 35 13-47 19-53 (54)
232 PRK10146 aminoalkylphosphonic 20.9 64 0.0014 23.2 1.6 27 23-50 109-136 (144)
233 PRK06704 RNA polymerase factor 20.3 76 0.0016 25.7 2.0 30 214-246 197-226 (228)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=4.2e-42 Score=288.31 Aligned_cols=251 Identities=78% Similarity=1.311 Sum_probs=202.2
Q ss_pred CCCCccccchhhccCcccccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEee
Q 025083 2 AEASPAAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYN 81 (258)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 81 (258)
|.||.||+.++|++|+.+.+.++.||+|.|+|+++|++||+++|||++..+...++..+..+|+..++....+.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 82 (286)
T PLN02300 3 AAASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN 82 (286)
T ss_pred cccccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc
Confidence 56788999999999998999999999999999999999999999999876544444455667777654445567777654
Q ss_pred cCCCcccCCCCeeeEEEEcCC---------------------------------CCCCcEEEEEECCCCCCCceeeeEEe
Q 025083 82 YGVTSYDIGTGFGHLAIATED---------------------------------DPDGYIFELIQRGPTPEPLCQVMLRV 128 (258)
Q Consensus 82 ~~~~~~~~~~~~~hia~~v~d---------------------------------DP~G~~iel~~~~~~~~~i~hv~l~v 128 (258)
.+......+.++.|++|.|+| ||+|+.|||++....+.++.|+.|.|
T Consensus 83 ~~~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~ 162 (286)
T PLN02300 83 YGVDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRV 162 (286)
T ss_pred CCCCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEe
Confidence 333333345688999999998 99999999999988888999999999
Q ss_pred cChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHHHHHHHH
Q 025083 129 GDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 208 (258)
Q Consensus 129 ~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~~~l~ 208 (258)
+|++++.+||+++|||+.......++.++...++..++......+++..+.....+..+++++|++|.|+|+++.++++
T Consensus 163 ~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~- 241 (286)
T PLN02300 163 GDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAI- 241 (286)
T ss_pred CCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHH-
Confidence 9999999999999999987654444445666666543322234566655443333445678999999999999999999
Q ss_pred HHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchhhhHhhh
Q 025083 209 LVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQ 256 (258)
Q Consensus 209 ~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 256 (258)
+++|+++..+|...++.+++.++|+||||+.|+|++..+|+++++
T Consensus 242 ---~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 242 ---KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred ---HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 899999999888777655578999999999999999999999875
No 2
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-38 Score=243.66 Aligned_cols=235 Identities=47% Similarity=0.830 Sum_probs=199.6
Q ss_pred hhccCcccccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCC-----------CCeEEEEeccCCCCceeEEEEEe
Q 025083 12 ELLEWPKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----------EKYSNAFLGFGPEQSYFVVELTY 80 (258)
Q Consensus 12 ~~~~~~~~~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~ 80 (258)
+|+.|+..+..+.-|+.+.|.|.+++++||+++|||++.+.++.+. +.|+..++++|+++.++.+||+.
T Consensus 6 d~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTY 85 (299)
T KOG2943|consen 6 DLLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTY 85 (299)
T ss_pred hhhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEe
Confidence 8999999999999999999999999999999999999998877665 67899999999999999999999
Q ss_pred ecCCCcccCCCCeeeEEEEcCC------------------------CCCCcEEEEEECCCCCCCceeeeEEecChhhHHH
Q 025083 81 NYGVTSYDIGTGFGHLAIATED------------------------DPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIK 136 (258)
Q Consensus 81 ~~~~~~~~~~~~~~hia~~v~d------------------------DP~G~~iel~~~~~~~~~i~hv~l~v~d~~~s~~ 136 (258)
+++...+..|+++.||.+.++| ||||+.++|+++.+.+.++..|+|+|.|+++|+.
T Consensus 86 NYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~VgdL~ks~k 165 (299)
T KOG2943|consen 86 NYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGKGSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNVGDLQKSIK 165 (299)
T ss_pred ccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCcccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEehhHHHHHH
Confidence 9999999999999999999987 9999999999988889999999999999999999
Q ss_pred HHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHHHHHHHHHHHHHhCC
Q 025083 137 FYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGG 216 (258)
Q Consensus 137 FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~ 216 (258)
||+++|||++.+.. ..++.+.++++.+ .+.|+|.++.+...+..+.|...|++-.+++..+.+.+ +..+.
T Consensus 166 yw~~~lgM~ileke----ek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~i----K~~n~ 235 (299)
T KOG2943|consen 166 YWEKLLGMKILEKE----EKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI----KSANG 235 (299)
T ss_pred HHHHHhCcchhhhh----hhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHH----HHhcc
Confidence 99999999988752 2356788888875 69999999988765555555555555556776666666 77766
Q ss_pred eeecCCcc--CCCCC-eeEEEEECCCCCEEEEEcchhhhHhhh
Q 025083 217 KITRQPGP--IPGLN-TKITSFVDPDGWKTVLVDNEDFLKELQ 256 (258)
Q Consensus 217 ~i~~~p~~--~~~~~-~~~~~~~DPdG~~iel~~~~~~~~~~~ 256 (258)
+|..+... .|++. .+++.+.|||||.|+|+.+++|++.++
T Consensus 236 ~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 236 TILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred ccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 66554332 23332 367778999999999999999998765
No 3
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.97 E-value=1.2e-28 Score=207.87 Aligned_cols=207 Identities=22% Similarity=0.270 Sum_probs=144.2
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEE
Q 025083 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (258)
Q Consensus 20 ~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~ 99 (258)
+|++++||.|.|+|++++++||+++|||++..+.. . .+|+..........+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~--~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----E--YIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----C--eEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 47899999999999999999999999999876521 1 23333211112223434321 12467899999
Q ss_pred cCC---------------------------------CCCCcEEEEEECCC---------------CCCCceeeeEEecCh
Q 025083 100 TED---------------------------------DPDGYIFELIQRGP---------------TPEPLCQVMLRVGDL 131 (258)
Q Consensus 100 v~d---------------------------------DP~G~~iel~~~~~---------------~~~~i~hv~l~v~d~ 131 (258)
|++ ||+|+.||++.... ...+++||+|.|+|+
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v~dl 147 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFVPDV 147 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEeCCH
Confidence 975 99999999986321 235789999999999
Q ss_pred hhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHHHHHHHHHHH
Q 025083 132 GRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVT 211 (258)
Q Consensus 132 ~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~~~l~~~~ 211 (258)
++|.+||+++|||++......+.+.....++.... .++.+.+.. ..+.+++|++|.|+|.+++ .++.++|
T Consensus 148 ~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v-~~~~~~l 217 (294)
T TIGR02295 148 QRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALTN-------GNGPRLHHIAYWVHDPLNI-IKACDIL 217 (294)
T ss_pred HHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEeec-------CCCCceeeEEEEcCCHHHH-HHHHHHH
Confidence 99999999999999876643333333345554322 233444321 1235899999999996543 3444555
Q ss_pred HHhCCe--eecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 212 QELGGK--ITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 212 ~~~G~~--i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+++|++ +..+|+.+..+...++|++||+|++|||++..
T Consensus 218 ~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 218 ASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 899998 66677665443456899999999999998754
No 4
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.97 E-value=2e-28 Score=207.44 Aligned_cols=206 Identities=21% Similarity=0.246 Sum_probs=140.1
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEc
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v 100 (258)
+++++||+|.|+|++++++||+++|||++..+.. . .+++..........+.+... ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~---~---~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG---Q---RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC---c---eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 6789999999999999999999999999876532 1 22333211112223333211 124678888888
Q ss_pred CC------------------------------------CCCCcEEEEEECCC---------------------CCCCcee
Q 025083 101 ED------------------------------------DPDGYIFELIQRGP---------------------TPEPLCQ 123 (258)
Q Consensus 101 ~d------------------------------------DP~G~~iel~~~~~---------------------~~~~i~h 123 (258)
++ ||+|+.||++.... ...+|+|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 74 99999999997431 1346899
Q ss_pred eeEEecChhhHHHHHHHhcCCeEeeeecCCccce-eEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHH
Q 025083 124 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKC-ALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYK 202 (258)
Q Consensus 124 v~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~ 202 (258)
|+|.|+|++++.+||+++|||+.......+.+.. ...|+..+.. .+.+.+... +...+++|++|.|+|+++
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~g~~~Hiaf~v~~~~~ 220 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVGD------PEPGKLHHVSFFLDSWED 220 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--CcccceecC------CCCCceEEEEEEcCCHHH
Confidence 9999999999999999999999876543332222 2345543221 222322211 112248999999998654
Q ss_pred HHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 203 SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 203 ~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
+. ++.++|+++|+++..+|..+....++++||+|||||+|||+..
T Consensus 221 v~-~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 221 VL-KAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred HH-HHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 33 3334558999999888876543345799999999999999833
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.96 E-value=2.8e-27 Score=198.79 Aligned_cols=204 Identities=18% Similarity=0.231 Sum_probs=139.3
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEc
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v 100 (258)
+.++.||+|.|+|+++|++||+++|||++..+.. .+ ..|+..+. ....+.+.... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~---~~~~~~~~--~~~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND---ALYLRLDS--RAHRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc---eEEEEcCC--CceEEEEEECC-------cCCeeeEeeee
Confidence 4689999999999999999999999998764321 11 22434322 22233332210 12456677766
Q ss_pred CC--------------------------------------CCCCcEEEEEECCC--------C----------CCCceee
Q 025083 101 ED--------------------------------------DPDGYIFELIQRGP--------T----------PEPLCQV 124 (258)
Q Consensus 101 ~d--------------------------------------DP~G~~iel~~~~~--------~----------~~~i~hv 124 (258)
++ ||+||.||++.... . +.+|.||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 65 99999999996331 0 2378999
Q ss_pred eEEecChhhHHHHHHHhcCCeEeeeecCC--cc-ceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChH
Q 025083 125 MLRVGDLGRSIKFYEKALGMKLLRTIDSP--EL-KCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 201 (258)
Q Consensus 125 ~l~v~d~~~s~~FY~~~lG~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~ 201 (258)
.|.|+|+++|.+||+++|||++......+ ++ .+..+++.+++. ++.+.+... +...+++|++|.|+|++
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~------~~~~~~~Hiaf~v~d~~ 218 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAG------PSEKRLNHLMLEVDTLD 218 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecC------CCCCceEEEEEEcCCHH
Confidence 99999999999999999999987653221 11 123556665432 444444311 12357999999999976
Q ss_pred HHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 202 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 202 ~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
++ .++.++|+++|+ +...|++++.+..+++||+||+|++||+...
T Consensus 219 ~v-~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 219 DV-GLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred HH-HHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 53 333345589999 6666766655556889999999999999863
No 6
>PLN02367 lactoylglutathione lyase
Probab=99.87 E-value=4.5e-21 Score=152.53 Aligned_cols=130 Identities=32% Similarity=0.585 Sum_probs=104.9
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCC---------------CceeEEEEEEecCCc
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEE---------------DQTTVLELAYSYGVT 182 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~ 182 (258)
.-.+.|++|+|+|+++|++||+++|||++..+...++.++.++|+++++. .....|+|.++++..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 45789999999999999999999999999998888877888898865331 113578998877643
Q ss_pred c------cccC----CceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchhhh
Q 025083 183 E------YTKG----NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 252 (258)
Q Consensus 183 ~------~~~~----~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 252 (258)
. +..+ .|++||+|.|+|+++++++| +++|+++..+|.... ..+++||+||||++|||++.....
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL----~a~Gv~~v~~P~~g~--~~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF----EELGVEFVKKPNDGK--MKGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHH----HHCCCEEEeCCccCC--ceEEEEEECCCCCEEEEEeccccc
Confidence 1 3333 38999999999999999999 899999998775432 257889999999999999987554
Q ss_pred H
Q 025083 253 K 253 (258)
Q Consensus 253 ~ 253 (258)
+
T Consensus 227 ~ 227 (233)
T PLN02367 227 T 227 (233)
T ss_pred c
Confidence 3
No 7
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=144.89 Aligned_cols=167 Identities=23% Similarity=0.319 Sum_probs=118.5
Q ss_pred CcccccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCC-cccCCCCee
Q 025083 16 WPKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT-SYDIGTGFG 94 (258)
Q Consensus 16 ~~~~~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~ 94 (258)
+..+..+.+.-|.|.|+||+++..||+++||+++..+.. +.+-++.++ . ..+.|....... +.....|+.
T Consensus 3 ~~~~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg--~-~LL~L~q~~~a~~~~~~~aGLy 73 (265)
T COG2514 3 FALTTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG--T-PLLTLEQFPDARRPPPRAAGLY 73 (265)
T ss_pred cccCCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC--E-EEEEEEeCCCCCCCCcccccee
Confidence 345567889999999999999999999999999987643 233345433 2 345555433322 223456999
Q ss_pred eEEEEcCC---------------------------------CCCCcEEEEEECCC-------------------------
Q 025083 95 HLAIATED---------------------------------DPDGYIFELIQRGP------------------------- 116 (258)
Q Consensus 95 hia~~v~d---------------------------------DP~G~~iel~~~~~------------------------- 116 (258)
|+||.+|+ ||+||.||++.+.+
T Consensus 74 H~AfLlP~r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~ 153 (265)
T COG2514 74 HTAFLLPTREDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLE 153 (265)
T ss_pred eeeeecCCHHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhh
Confidence 99999998 99999999997731
Q ss_pred -----------CCCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEE--EEecCCcc
Q 025083 117 -----------TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLEL--AYSYGVTE 183 (258)
Q Consensus 117 -----------~~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l--~~~~~~~~ 183 (258)
....|.||.|.|.|++++.+||+++|||+...+.. ...|+..+++ |+.+.+ ........
T Consensus 154 ~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~Y--HHHia~N~W~s~~~~~ 225 (265)
T COG2514 154 EATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDY--HHHLAANTWNSRGARP 225 (265)
T ss_pred hccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCc--ceeEEEeccccCCCCC
Confidence 13578999999999999999999999999988732 4578887776 444443 22211111
Q ss_pred c-ccCCceeeEEEEECC
Q 025083 184 Y-TKGNAYAQVAISTDD 199 (258)
Q Consensus 184 ~-~~~~g~~hi~~~v~d 199 (258)
. ....|+..+.+.+++
T Consensus 226 ~~~~~~GLa~~~i~~~~ 242 (265)
T COG2514 226 RNANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCCCcceEEEEcCC
Confidence 1 122367777777777
No 8
>PRK10291 glyoxalase I; Provisional
Probab=99.85 E-value=2.6e-20 Score=138.10 Aligned_cols=123 Identities=47% Similarity=0.849 Sum_probs=92.8
Q ss_pred eEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHHHH
Q 025083 125 MLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSA 204 (258)
Q Consensus 125 ~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~ 204 (258)
+|.|+|+++|++||+++|||++......++..+.++++..++......+++..+....++..+.++.|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999987765555555667777655432344566654433223344568999999999999999
Q ss_pred HHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchhh
Q 025083 205 EVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 251 (258)
Q Consensus 205 ~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 251 (258)
++| +++|+++..+|.+.+++..+++||+||||++|||++..+.
T Consensus 81 ~~l----~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~ 123 (129)
T PRK10291 81 EKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDA 123 (129)
T ss_pred HHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccc
Confidence 888 8999999877665555444678899999999999987643
No 9
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=8.1e-20 Score=139.05 Aligned_cols=132 Identities=45% Similarity=0.815 Sum_probs=98.3
Q ss_pred CCCCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEE
Q 025083 116 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAI 195 (258)
Q Consensus 116 ~~~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~ 195 (258)
....++.|+.|.|+|+++|.+||+++|||++..+...+...+...+++.+.......+++.......+...+.+..|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 34678999999999999999999999999987655444333445566544322334555544332222333458899999
Q ss_pred EECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchhh
Q 025083 196 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 251 (258)
Q Consensus 196 ~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 251 (258)
.|+|++++.++| .++|+++..+|.+.+++..+++||+||||++|||++....
T Consensus 93 ~v~dld~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 93 GVDDVYKACERV----RALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred ecCCHHHHHHHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCch
Confidence 999999999999 8999999888766555455788999999999999987643
No 10
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.83 E-value=1.7e-19 Score=140.75 Aligned_cols=129 Identities=31% Similarity=0.594 Sum_probs=99.1
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCC---------------ceeEEEEEEecCCc
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED---------------QTTVLELAYSYGVT 182 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~ 182 (258)
..++.|++|+|.|+++|++||+++|||++..+...++.++.+++++.+... ....|+|..+....
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 467999999999999999999999999998887666666777887643210 13478887654322
Q ss_pred c------cc----cCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchhhh
Q 025083 183 E------YT----KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 252 (258)
Q Consensus 183 ~------~~----~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 252 (258)
. +. .+.|+.||+|.|+|+++++++| +++|+++...|.. +...+++||+||||++|||++.....
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L----~~~Gv~v~~~p~~--~~~~~~~fi~DPdG~~IEl~e~~~~~ 178 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERF----EKLGVEFVKKPDD--GKMKGLAFIKDPDGYWIEIFDLKRIG 178 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHH----HHCCCeEEeCCcc--CCceeEEEEECCCCCEEEEEECCCch
Confidence 1 21 1248999999999999999999 8999999876643 22246788999999999999987544
No 11
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=5.3e-19 Score=129.53 Aligned_cols=114 Identities=31% Similarity=0.548 Sum_probs=85.2
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCc-----------cceeEEEeeecCCCceeEEEEEEecCCcccccCC
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----------LKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGN 188 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 188 (258)
++.|++|+|+|+++|++||+++|||++..+..+++ +.+..+++...++..+..++|..+++..++..|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68899999999999999999999999887665554 3344455654333346789998877655555555
Q ss_pred ceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 189 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 189 g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
+ |++|.|++. ++.++| +++|+++...|. .++|++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l----~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNA----KKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHH----HHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 566666665 455777 899999875432 28899999999999985
No 12
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.82 E-value=1e-18 Score=127.63 Aligned_cols=120 Identities=43% Similarity=0.742 Sum_probs=90.1
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCC-cccccCCceeeEEEEECC
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV-TEYTKGNAYAQVAISTDD 199 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hi~~~v~d 199 (258)
+.|+.|.|+|++++.+||+++|||+.......++.++..+++..+....+..+++...... .+...+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999877644333345556666543112455666544322 122334578999999999
Q ss_pred hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEE
Q 025083 200 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 246 (258)
Q Consensus 200 ~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 246 (258)
++++++++ +++|+++..+|... .+++++||+|||||+|||+
T Consensus 81 id~~~~~l----~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERL----EEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHH----HHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 99999999 89999999887654 3457899999999999985
No 13
>PLN02300 lactoylglutathione lyase
Probab=99.81 E-value=1.2e-18 Score=146.44 Aligned_cols=130 Identities=45% Similarity=0.787 Sum_probs=100.4
Q ss_pred CCCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEE
Q 025083 117 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIS 196 (258)
Q Consensus 117 ~~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~ 196 (258)
...++.|+.|.|+|+++|++||+++|||+...+...+...+...++..++...+..+++...........+.++.|++|.
T Consensus 21 ~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~ 100 (286)
T PLN02300 21 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIA 100 (286)
T ss_pred ccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEE
Confidence 46789999999999999999999999999876654444445566666544333556677544333223345689999999
Q ss_pred ECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchh
Q 025083 197 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 250 (258)
Q Consensus 197 v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 250 (258)
|+|++++++++ +++|+++..+|.+.++++.+++||+|||||.|||++...
T Consensus 101 v~dvd~~~~~l----~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 101 VEDVAKTVELV----KAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred eCCHHHHHHHH----HHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 99999999999 899999998887766555678899999999999998753
No 14
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.80 E-value=2.1e-18 Score=129.90 Aligned_cols=122 Identities=18% Similarity=0.244 Sum_probs=88.7
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCc-----------cceeEEEeeecCCCceeEEEEEEecCCcc----
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----------LKCALAMLGYAEEDQTTVLELAYSYGVTE---- 183 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---- 183 (258)
.+++||+|.|+|+++|++||++ |||++..+....+ .+..++++..+. ....++|.....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCcC
Confidence 4689999999999999999998 9998765432211 123445554322 245677766432211
Q ss_pred ---cccCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 184 ---YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 184 ---~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
...+.|+.||+|.|+|+++++++| +++|+++..+|.... .+.+++||+||||+.|||++.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l----~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARL----RKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHH----HHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 112447899999999999999999 899999987664433 245889999999999999974
No 15
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.80 E-value=5.7e-19 Score=134.73 Aligned_cols=122 Identities=20% Similarity=0.184 Sum_probs=86.9
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCC-ccceeEEEeeecCCC---ceeEEEEEEecCCcccccCCceeeEEE
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSP-ELKCALAMLGYAEED---QTTVLELAYSYGVTEYTKGNAYAQVAI 195 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~g~~hi~~ 195 (258)
+|.||+|.|+|+++|++||+++|||++......+ ..+....++..++.. .++.+.+.. ..+.+++||+|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5889999999999999999999999987654332 122345666653210 011122211 11468999999
Q ss_pred EECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 196 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 196 ~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
.|+|++++. ++.++|+++|+++.++|+++..+...++|++|||||+|||+...
T Consensus 74 ~v~die~~~-~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQG-LGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHH-HHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999998775 22234499999999888877654556789999999999998654
No 16
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.80 E-value=2.7e-18 Score=129.54 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccc-eeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK-CALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIS 196 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~ 196 (258)
..+++|++|.|+|+++|.+||+++|||++..+...+++. ....++..+. .++.+.+... .+.+++|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~--~~h~~~~~~~-------~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN--KPHDIAFVGG-------PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC--CcceEEEecC-------CCCCceEEEEE
Confidence 457999999999999999999999999987664322222 2234554433 2344444211 13579999999
Q ss_pred ECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 197 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 197 v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
|+|++++. ++.++++++|+++..+|.++..+.++++||+|||||+|||+..
T Consensus 75 v~d~~~l~-~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVL-KAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHH-HHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99987653 3335558999999877765543345789999999999999753
No 17
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.80 E-value=2.8e-18 Score=128.38 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=90.9
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc------cccCCceeeEE
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE------YTKGNAYAQVA 194 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~g~~hi~ 194 (258)
++|+.|.|+|+++|.+||+++|||++..+...+ +..+.++..+ ...+.+........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999988764332 1233444422 34455543221111 12345889999
Q ss_pred EEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchhhhH
Q 025083 195 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 253 (258)
Q Consensus 195 ~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 253 (258)
|.|+|+++.++++ +++|+++..+|...+ ++.++++++||||+.|||++....++
T Consensus 75 ~~V~Dvda~~~~l----~~~G~~v~~~p~~~~-~~~~~~~i~dp~G~~ie~~~~~~~~~ 128 (136)
T cd08342 75 FRVDDAAAAYERA----VARGAKPVQEPVEEP-GELKIAAIKGYGDSLHTLVDRKGYKG 128 (136)
T ss_pred EEeCCHHHHHHHH----HHcCCeEccCceecC-CeEEEEEEeccCCcEEEEEecCCCCC
Confidence 9999999999999 899999998887644 35689999999999999999876544
No 18
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.79 E-value=6.3e-18 Score=126.16 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=89.2
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
+.++.|+.|.|+|+++|.+||+++|||++...... ...++..+....++.+.+..... ...++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 35789999999999999999999999998765421 23455543222345565543211 136899999999
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchh
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 250 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 250 (258)
+|++++. ++.++|+++|+++..+|..++.++..++||+||+|++|||+....
T Consensus 71 ~d~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 71 GDIDEVM-LGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CCHHHHH-HHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 9987665 444555999999987776665545577999999999999986543
No 19
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.78 E-value=4.8e-17 Score=140.43 Aligned_cols=190 Identities=22% Similarity=0.337 Sum_probs=126.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc------ccCCCCeee
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS------YDIGTGFGH 95 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h 95 (258)
++++||.+.|+|++++++||++.||+++........+. ....+.. +...++|..+..... ...++++.|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~----G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQ----GQINFVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEe----CCEEEEEecCCCCCchHHHHHHhCCCceEE
Confidence 47899999999999999999999999987653222222 2222332 235677765443221 124678999
Q ss_pred EEEEcCC--------------------CC-------------CCcEEEEEECCC-------------------------C
Q 025083 96 LAIATED--------------------DP-------------DGYIFELIQRGP-------------------------T 117 (258)
Q Consensus 96 ia~~v~d--------------------DP-------------~G~~iel~~~~~-------------------------~ 117 (258)
+||.|+| ++ .|..+-++++.. .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 9999999 33 233344554310 0
Q ss_pred CCCceeeeEEec--ChhhHHHHHHHhcCCeEeeeecCCc--cceeEEEeeecCCCceeEEEEEEecC---Cc------cc
Q 025083 118 PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPE--LKCALAMLGYAEEDQTTVLELAYSYG---VT------EY 184 (258)
Q Consensus 118 ~~~i~hv~l~v~--d~~~s~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~---~~------~~ 184 (258)
..+++||++.|+ |++++..||+++|||+......... .+.....+..+. ....++|..... .. ..
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~--g~~~i~L~ep~~~~~~s~i~~fl~~ 233 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPD--GKVKIPLNEPASGKDKSQIEEFLEF 233 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCC--CcEEEEEeccCCCCCCCHHHHHHHH
Confidence 124899999999 9999999999999999876543211 122222222211 245667665311 11 12
Q ss_pred ccCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCC
Q 025083 185 TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 222 (258)
Q Consensus 185 ~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p 222 (258)
..|.|++||||.|+|+++.+++| +++|+++...|
T Consensus 234 ~~g~Gv~HiAf~vdDi~~~~~~l----~~~Gv~~l~~P 267 (353)
T TIGR01263 234 YNGAGVQHIALNTDDIVRTVRAL----RARGVEFLDTP 267 (353)
T ss_pred cCCCCccEEEEEcCCHHHHHHHH----HHcCCccCcCC
Confidence 24679999999999999999999 89999988776
No 20
>PRK11478 putative lyase; Provisional
Probab=99.78 E-value=8.5e-18 Score=124.35 Aligned_cols=121 Identities=21% Similarity=0.179 Sum_probs=83.1
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCc-cceeEEEeeecCCCceeEEEEEEecCCcc---cccCCceeeEE
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-LKCALAMLGYAEEDQTTVLELAYSYGVTE---YTKGNAYAQVA 194 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hi~ 194 (258)
.+++||.|.|+|+++|.+||+++|||++......+. ..+.. .+..+. ...+++.....+.. .....|+.|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALNG---QYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecCC---CcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 568999999999999999999999999764321111 11211 122211 34566654322111 12234789999
Q ss_pred EEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 195 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 195 ~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
|.|+|+++++++| +++|+++...+. .+..+.+++||+|||||.|||++.
T Consensus 81 f~v~d~~~~~~~l----~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 81 FSVDDIDAAVAHL----ESHNVKCEAIRV-DPYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEeCCHHHHHHHH----HHcCCeeecccc-CCCCCCEEEEEECCCCCEEEEEeC
Confidence 9999999999988 889999864332 222345889999999999999863
No 21
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.78 E-value=7.1e-18 Score=129.86 Aligned_cols=125 Identities=20% Similarity=0.184 Sum_probs=87.3
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeee----cC--------------CccceeEEEeeecCCCceeEEEEEEecC
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTI----DS--------------PELKCALAMLGYAEEDQTTVLELAYSYG 180 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 180 (258)
.+++||+|.|+|+++|++||+++|||++..+. .. ....+.++++..++ ...++|.....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 56899999999999999999999999875321 10 01124456665433 34577766543
Q ss_pred Ccc-c----ccCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCC-ccC-CCC-CeeEEEEECCCCCEEEEEcchh
Q 025083 181 VTE-Y----TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP-GPI-PGL-NTKITSFVDPDGWKTVLVDNED 250 (258)
Q Consensus 181 ~~~-~----~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p-~~~-~~~-~~~~~~~~DPdG~~iel~~~~~ 250 (258)
+.. . ..+.|..|++|.|+|++++++++ +++|+++..++ ... ++. ..+++||+|||||.|||++...
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERI----VAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHH----HHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 221 1 12358999999999999999999 88998765432 211 111 2378999999999999998763
No 22
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=9.5e-18 Score=123.13 Aligned_cols=119 Identities=19% Similarity=0.248 Sum_probs=81.8
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc---cccCCceeeEEEE
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE---YTKGNAYAQVAIS 196 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hi~~~ 196 (258)
++.|+.|.|+|+++|++||+++|||+...+...+..++...++..++ ...+++.......+ .....|+.|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57899999999999999999999999765433322334445555432 34566654322111 1123478999999
Q ss_pred ECC---hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEE
Q 025083 197 TDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 246 (258)
Q Consensus 197 v~d---~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 246 (258)
|+| +++++++| +++|+++..+|...+. +.+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERL----RADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHH----HHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 976 55555555 8999999876654332 335577999999999983
No 23
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=1.4e-17 Score=125.10 Aligned_cols=115 Identities=13% Similarity=0.186 Sum_probs=85.7
Q ss_pred eeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChH
Q 025083 122 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 201 (258)
Q Consensus 122 ~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~ 201 (258)
.||.|.|+|+++|++||+++|||++..+... ..+++...+...++.+.+.. ....+++|++|.|+|.+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999998776421 34666643322234443321 12358999999999865
Q ss_pred HHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 202 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 202 ~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+ ++++.++++++|+++..+|+.++.++.+++||+||+|+.|||+...
T Consensus 69 ~-v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 69 D-IGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred H-HHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 3 3455566699999999888877655668899999999999998654
No 24
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.76 E-value=3.3e-17 Score=125.15 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=89.3
Q ss_pred CCCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCC---ccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeE
Q 025083 117 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSP---ELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQV 193 (258)
Q Consensus 117 ~~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi 193 (258)
...+|.||.|.|+|++++.+||+++|||++....... +.+...+++..+. .++.+.+... ..+.+++|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEE
Confidence 3578999999999999999999999999986543221 1133456666533 2344444322 123589999
Q ss_pred EEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchh
Q 025083 194 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 250 (258)
Q Consensus 194 ~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 250 (258)
+|.|+|++++ +.+.++|+++|+++..+|..++.++.+++|++||+|++|||+....
T Consensus 78 af~V~d~~~l-~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDV-GRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHH-HHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 9999986543 2333444999999988877665555688999999999999986643
No 25
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=4.4e-17 Score=119.38 Aligned_cols=120 Identities=24% Similarity=0.284 Sum_probs=83.9
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCc-cceeEEEeeecCCCceeEEEEEEecCCcc---cccCCceeeEE
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-LKCALAMLGYAEEDQTTVLELAYSYGVTE---YTKGNAYAQVA 194 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hi~ 194 (258)
.+++|++|.|.|++++.+||+++|||+.......++ ..+.+ .+..++ ...+++........ ...+.|.+|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 478999999999999999999999999876532222 22222 222211 23455543222111 12345889999
Q ss_pred EEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 195 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 195 ~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
|.|+|++++.+++ +++|+++...|... ..+.+++|++||+|++|||++
T Consensus 78 ~~v~d~~~~~~~l----~~~G~~~~~~~~~~-~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHL----KAKGVEVEPIRVDE-FTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHH----HHcCCccccccccC-CCceEEEEEECCCCCEEEecC
Confidence 9999999999888 89999987755332 234578999999999999975
No 26
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.76 E-value=4.5e-17 Score=125.35 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=82.3
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
+.+|.||.|.|+|+++|++||+++|||++......+.+.....++.... ..+.+.+.. ..+.++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 4679999999999999999999999999875543322222344554322 234444321 1235789999999
Q ss_pred CChHHHHHHHHHHHHHhCCe--eecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 198 DDVYKSAEVVNLVTQELGGK--ITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~--i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+|.++ ++++.++|+++|++ +..+|+.+...+.+++||+|||||.|||++..
T Consensus 72 ~~~~~-v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHN-IIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHH-HHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 98443 33344555899986 33445544333456899999999999998654
No 27
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.75 E-value=3.5e-17 Score=119.98 Aligned_cols=116 Identities=22% Similarity=0.171 Sum_probs=79.7
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
..++.|+.|.|+|+++|.+||+++|||++..... ++ .+++.......++.+.+.. ....+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 3578999999999999999999999999876531 11 1233322111234444421 1134788999999
Q ss_pred CC---hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 198 DD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 198 ~d---~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
++ ++++.+++ +++|+++...|.....+.++.+||+|||||+|||+...
T Consensus 70 ~~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARL----QAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHH----HHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 85 44445555 99999988765433333357899999999999998653
No 28
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.74 E-value=9.3e-17 Score=116.16 Aligned_cols=114 Identities=25% Similarity=0.237 Sum_probs=82.7
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECCh
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDV 200 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~ 200 (258)
+.|++|.|+|+++|++||+++||+++..... ... ..+++..++ ...+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 5799999999999999999999999876542 112 233444332 1223333222111 1234677899999999
Q ss_pred HHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 201 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 201 ~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
+++++++ +++|+++..+|...++ .++.++|+|||||.|+|++
T Consensus 73 ~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARV----EAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHH----HHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 9999888 8999999988876553 4589999999999999975
No 29
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.74 E-value=1.2e-16 Score=119.92 Aligned_cols=117 Identities=24% Similarity=0.288 Sum_probs=83.5
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
..++.|+.|.|+|+++|.+||+++|||++..+.. ..+++..+ ...+.+...........+.++.|++|.+
T Consensus 2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v 71 (139)
T PRK04101 2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSI 71 (139)
T ss_pred CCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEe
Confidence 4579999999999999999999999999875421 23344432 2344443221111112234688999999
Q ss_pred C--ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 198 D--DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 198 ~--d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+ |++++++++ +++|+++..+|...+. +++.+||+|||||+|||.+..
T Consensus 72 ~~~dv~~~~~~l----~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 72 EEEDFDHWYQRL----KENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred cHHHHHHHHHHH----HHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 7 777777777 8999998876655433 458999999999999998765
No 30
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.74 E-value=5.2e-17 Score=119.78 Aligned_cols=119 Identities=23% Similarity=0.360 Sum_probs=84.3
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCc-c---c--ccCCceeeE
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-E---Y--TKGNAYAQV 193 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~---~--~~~~g~~hi 193 (258)
++.|+.|.|+|++++.+||+++|||+.......+..++...++..+ ...++|....... . + ..+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 5789999999999999999999999987543333333455555543 2345665432211 1 0 124578899
Q ss_pred EEEECChHHHHHHHHHHHHHhCCeeecC-CccCCCCCeeEEEE--ECCCCCEEEEEc
Q 025083 194 AISTDDVYKSAEVVNLVTQELGGKITRQ-PGPIPGLNTKITSF--VDPDGWKTVLVD 247 (258)
Q Consensus 194 ~~~v~d~~~~~~~l~~~~~~~G~~i~~~-p~~~~~~~~~~~~~--~DPdG~~iel~~ 247 (258)
+|.|+|+++++++| +++|+++..+ |...++ +.+.+|+ +||||+.||+++
T Consensus 77 ~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETL----KEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHH----HHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 99999999999998 8899998764 433222 3456666 799999999975
No 31
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.72 E-value=3e-16 Score=116.53 Aligned_cols=118 Identities=24% Similarity=0.242 Sum_probs=84.0
Q ss_pred eeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChH
Q 025083 122 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 201 (258)
Q Consensus 122 ~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~ 201 (258)
+||.|.|+|++++.+||+++|||++......+ +.....++..+. .++.+.+.... ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 49999999999999999999999987654432 223445555433 23445543211 1458999999999975
Q ss_pred HHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 202 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 202 ~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+ ++.+.++++++|+++..+|...+.+..++++|+||||+.|||++..
T Consensus 72 ~-~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 72 D-ILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred H-HHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 3 2223334489999998877655544457889999999999998765
No 32
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.72 E-value=2.3e-16 Score=119.08 Aligned_cols=118 Identities=19% Similarity=0.299 Sum_probs=85.0
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
+.++.|+.|.|+|++++++||+++|||++..... . ...++..+.. ++.+.+... ...++.|++|.|
T Consensus 2 ~~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~----~-~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v 67 (144)
T cd07239 2 PVKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG----D-QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEM 67 (144)
T ss_pred CceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC----C-eEEEEECCCC--cceEEEccC-------CCCceEEEEEEC
Confidence 3478999999999999999999999999865431 1 2345554432 344544311 134788999999
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchh
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 250 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 250 (258)
+|++++. ++.++++++|+++..+|.....+..+++||+||+||.|||++...
T Consensus 68 ~d~~~l~-~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 68 PSIDEVM-RGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CCHHHHH-HHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 9977654 333455999999987765443334577899999999999987653
No 33
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.72 E-value=3.3e-16 Score=121.07 Aligned_cols=124 Identities=19% Similarity=0.124 Sum_probs=83.9
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
..+|.|+.|.|+|++++.+||+++|||++........+.....++.... ....+.+... . .....+++|++|.|
T Consensus 4 i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~--~--~~~~~~~~hiaf~v 77 (166)
T cd09014 4 VRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRD--P--AGARGRLHHLAYAL 77 (166)
T ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecC--C--CCCCCCceEEEEEC
Confidence 3578999999999999999999999999876543332222334554322 1333433221 1 11224689999999
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
+|.+++ +.+.++++++|+++..+|..+......++||+|||||+|||+..
T Consensus 78 ~~~~~l-~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 78 DTREDV-LRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CCHHHH-HHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 986533 23334448999998877765543334578999999999999877
No 34
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.72 E-value=3.2e-16 Score=114.68 Aligned_cols=115 Identities=20% Similarity=0.160 Sum_probs=79.2
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
..++.|+.|.|+|+++|.+||+++|||++..+.. ..+++...+....+.+.+... ...++.|++|.|
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~v 70 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWRA 70 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEEEc
Confidence 3578999999999999999999999999876532 124444322212444544321 134789999999
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
++. +.++++.++++++|+++...+... + .+..+||+|||||+||++..
T Consensus 71 ~~~-~~v~~~~~~l~~~G~~~~~~~~~~-~-~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 71 SSP-EALERRVAALEASGLGIGWIEGDP-G-HGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred CCH-HHHHHHHHHHHHcCCccccccCCC-C-CcceEEEECCCCCEEEEEEe
Confidence 873 334444455599999875433222 2 24678999999999999864
No 35
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.72 E-value=3.6e-16 Score=114.75 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=80.5
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCcc-ceeEEEeeecCCCceeEEEEEEecCCcc--cccCCceeeEEEE
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPEL-KCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAIS 196 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hi~~~ 196 (258)
++.||+|.|.|++++.+||+++|||+........+. .....++.......+..++|........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998766532221 1122333322111245666654432211 1122368899999
Q ss_pred ECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEE
Q 025083 197 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 246 (258)
Q Consensus 197 v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 246 (258)
|+|. +.++++.++++++|+++..++.. .+.+.+||+||+||+|||+
T Consensus 81 v~~~-~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSE-ASLDAWRERLRAAGVPVSGVVDH---FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCH-HHHHHHHHHHHHcCCcccceEee---cceEEEEEECCCCCEEEeC
Confidence 9963 22344445559999998754332 2458899999999999985
No 36
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.71 E-value=2.4e-16 Score=117.12 Aligned_cols=117 Identities=22% Similarity=0.239 Sum_probs=79.6
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECC-
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD- 199 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d- 199 (258)
|+||.|.|+|++++++||+++|||++..... ...++..+ ...+.+.............++.|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999998765321 11233332 234444332211111123478899999975
Q ss_pred -hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchhhh
Q 025083 200 -VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 252 (258)
Q Consensus 200 -~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 252 (258)
+++++++| +++|+++..+|..... .++.+||+|||||+|||.+.....
T Consensus 71 dld~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~~~~ 119 (131)
T cd08363 71 EFDAFYTRL----KEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGTLAE 119 (131)
T ss_pred HHHHHHHHH----HHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCcHHH
Confidence 66666666 8999998755433322 458899999999999999876443
No 37
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.71 E-value=4e-16 Score=114.58 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=79.6
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
..++.|+.|.|+|+++|++||+++|||+..... +.+ ..+..++ +..+.+... ....+..|++|.|
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~---~~~l~~~~~------~~~~~~~h~a~~v 66 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPF--AVVKLDN---GVSLDFAQP------DGEIPPQHYAFLV 66 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCE--EEEEcCC---CcEEEEecC------CCCCCcceEEEEe
Confidence 457899999999999999999999999886632 112 1222222 334544321 1123567999999
Q ss_pred C--ChHHHHHHHHHHHHHhCCeeecCCccC------CCCCeeEEEEECCCCCEEEEEcc
Q 025083 198 D--DVYKSAEVVNLVTQELGGKITRQPGPI------PGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 198 ~--d~~~~~~~l~~~~~~~G~~i~~~p~~~------~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
+ |+++++++| +++|+++..+|... ...+++.+||+|||||.|||++.
T Consensus 67 ~~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 67 SEEEFDRIFARI----RERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred CHHHHHHHHHHH----HHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 7 477777777 89999997766432 12346899999999999999986
No 38
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.71 E-value=3.5e-16 Score=114.40 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=79.2
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 198 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 198 (258)
.++.||+|.|+|+++|.+||+++|||+...+... ..+++..++ .++.+.+... ...+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-----~~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-----GALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCCC-----CeEEEEccC--CceEEEEEeC-------CCCceeEEEEEEC
Confidence 3689999999999999999999999987654211 134444432 2455555321 1247789999998
Q ss_pred ChHHHHHHHHHHHHHhCCeeecCCccC--CCCCeeEEEEECCCCCEEEEEcch
Q 025083 199 DVYKSAEVVNLVTQELGGKITRQPGPI--PGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 199 d~~~~~~~l~~~~~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+.+ .++.+.++|+++|+++...|.+. ..+.++++||+|||||.|||+...
T Consensus 67 ~~~-dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEA-ALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHH-HHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 732 23333344499999998655321 222347899999999999998643
No 39
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.71 E-value=8e-17 Score=118.35 Aligned_cols=121 Identities=24% Similarity=0.264 Sum_probs=81.3
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeec--CCccceeEEEeeecCCCceeEEEEEEecCCcccccC-----Cceee
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTID--SPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKG-----NAYAQ 192 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~-----~g~~h 192 (258)
+|+||+|.|+|++++++||+++|||++..... .........++..+. .. +.+.....+.....+ .+..|
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~l~~~~~~~~~~~~~~~~~~~~~~ 76 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GH--IELFLNPSPPPRASGHSFPEHGGHH 76 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SC--EEEEEEESSSSSSEEEHHHSHTSEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cc--eeeeeecccccccccccccccccee
Confidence 58999999999999999999999999988765 122223445555433 23 333333222211111 14567
Q ss_pred EEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEE
Q 025083 193 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 245 (258)
Q Consensus 193 i~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 245 (258)
+++.+.+++++. ++.++|++.|+++..+|.....+...++|++||+|+.|||
T Consensus 77 i~~~~~~~~dl~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 77 IAFLAFDVDDLD-AAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEEEESSHHHHH-HHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEEEeccHHHHH-HHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 888887754433 3335669999999988876665555567899999999997
No 40
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=2.2e-16 Score=116.17 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=79.1
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 198 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 198 (258)
.+|.|+.|.|+|+++|.+||+++|||++..+.. ...++..+. .++.+.+.... .+..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~--~~~~i~l~~~~--------~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDA--RDHTLVYIEGD--------PAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCC--ccEEEEEEeCC--------CceEEEEEEEC
Confidence 578999999999999999999999999765421 134555433 24445443211 35678999998
Q ss_pred C---hHHHHHHHHHHHHHhCCeeecCCccCC--CCCeeEEEEECCCCCEEEEEcch
Q 025083 199 D---VYKSAEVVNLVTQELGGKITRQPGPIP--GLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 199 d---~~~~~~~l~~~~~~~G~~i~~~p~~~~--~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
| ++++.+++ +++|+++..++.+.. .+..+++||+|||||+|||+...
T Consensus 69 ~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 69 DDDALESAATEL----EQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 7 55555555 999999877653211 22346789999999999998664
No 41
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.70 E-value=5.3e-16 Score=118.73 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=81.4
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc-cccCCceeeEEEEEC
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAISTD 198 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~~~v~ 198 (258)
+++||.|.|+|+++|.+||+++|||++..+.. . ...+...+. ..++.+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 57899999999999999999999999876543 1 223333221 1256677765422111 122347899999999
Q ss_pred C---hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 199 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 199 d---~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
| +++++++| +++|+++.. +... +..+++||+|||||.|||++..
T Consensus 75 d~~dvd~~~~~L----~~~Gv~~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERL----EALGLPVSG-IVDR--FYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHH----HHCCCCccc-cccc--ccEEEEEEECCCCcEEEEEECC
Confidence 8 56666666 899998643 3222 2357899999999999999765
No 42
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=8.7e-16 Score=114.09 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=78.3
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccce-eEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKC-ALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIS 196 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~ 196 (258)
..++.|+.|.|+|+++|++||+++|||+...+........ ...++..+ ...+.+..... ....++.|++|.
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~----~~~~~~~Hiaf~ 73 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG----GLWIAIMEGDS----LQERTYNHIAFK 73 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC----CeEEEEecCCC----CCCCCceEEEEE
Confidence 4579999999999999999999999998765432110000 01112111 23445532211 122468999999
Q ss_pred EC--ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 197 TD--DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 197 v~--d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
|+ +++++.++| +++|+++..+ .+...+.++.+||+|||||.|||....
T Consensus 74 v~~~~ld~~~~~l----~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 74 ISDSDVDEYTERI----KALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred cCHHHHHHHHHHH----HHCCCEEecC-CccccCCceEEEEECCCCCEEEEecCC
Confidence 98 455555555 9999988643 222333468999999999999999664
No 43
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.70 E-value=4.3e-16 Score=113.92 Aligned_cols=114 Identities=24% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
..++.|+.|.|+|++++.+||+++|||++..... . .+++.......++.+.+... ...+..|++|.|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~v 68 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----D--RIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFRV 68 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----C--eEEEEecCCCceEEEEEeeC-------CCCceeEEEEEC
Confidence 3578999999999999999999999999876532 1 23333211112344444211 124788999999
Q ss_pred CC---hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 198 DD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 198 ~d---~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
.+ ++++++++ +++|+++...|.....+.++++|+.|||||+|||+..
T Consensus 69 ~~~~dv~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 69 RSEEDLDKAEAFF----QELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCHHHHHHHHHHH----HHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 64 55555555 8999998776443333345789999999999999854
No 44
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=7.6e-16 Score=112.78 Aligned_cols=117 Identities=22% Similarity=0.332 Sum_probs=82.8
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCC---cccccCCceeeEEE
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV---TEYTKGNAYAQVAI 195 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~g~~hi~~ 195 (258)
.+++|+.|.|+|++++.+||+++|||+........ .+ ..+..+ ...+.+...... .....+.+..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~--~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GR--KALRFG----SQKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--Cc--eEEEeC----CEEEEEecCCCccCcCccCCCCCCceEEE
Confidence 46899999999999999999999999987654321 12 223322 134555432211 11123457899999
Q ss_pred EECC-hHHHHHHHHHHHHHhCCeeecCCccCCC--CCeeEEEEECCCCCEEEEEc
Q 025083 196 STDD-VYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 196 ~v~d-~~~~~~~l~~~~~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iel~~ 247 (258)
.+++ ++++.+++ +++|+++..+|.+..+ +.++.+||+|||||+||+++
T Consensus 74 ~~~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHL----EAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHH----HHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9985 78777777 8999999887755432 23578999999999999986
No 45
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.70 E-value=1.7e-15 Score=110.91 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=82.1
Q ss_pred eeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCccc----ccCCceeeEEEEECC
Q 025083 124 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEY----TKGNAYAQVAISTDD 199 (258)
Q Consensus 124 v~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~----~~~~g~~hi~~~v~d 199 (258)
..|.|+|++++.+||+++|||+.......+++....+.+..++ ..+.+......... ....+..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD----GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC----EEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 4689999999999999999999887653333333333444332 23334332211111 223467789999999
Q ss_pred hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 200 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 200 ~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
++++++++ +++|+++..+|...++ +.+.++|+|||||+|+|.+
T Consensus 79 ~d~~~~~l----~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERA----RAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHH----HHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEec
Confidence 99999988 8899999988876654 4578899999999999974
No 46
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=7.9e-16 Score=111.62 Aligned_cols=117 Identities=23% Similarity=0.323 Sum_probs=83.2
Q ss_pred eeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc--cccCCceeeEEEEECCh
Q 025083 123 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAISTDDV 200 (258)
Q Consensus 123 hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hi~~~v~d~ 200 (258)
||.|.|+|++++.+||+++|||++........ +...+.+..... ....+.+........ .....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999887653222 233333432211 134455543322211 12345788999999999
Q ss_pred HHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 201 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 201 ~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
+++++++ +++|+++..+|.... .++.+|++||+||+|||++
T Consensus 79 ~~~~~~l----~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEEL----KARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHH----HhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 9999999 889999998774332 3488999999999999975
No 47
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.70 E-value=3.3e-16 Score=112.52 Aligned_cols=113 Identities=25% Similarity=0.187 Sum_probs=81.3
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc-cccCCceeeEEEEECC
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAISTDD 199 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~~~v~d 199 (258)
|+|++|.|+|++++.+||+++|||+...+.... ....++..++ ...+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 579999999999999999999999877553322 1223444332 23455544332211 1234578899999999
Q ss_pred hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEE
Q 025083 200 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 245 (258)
Q Consensus 200 ~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 245 (258)
++++++++ +++|+++..++.. ..+.+.++++||+|++|||
T Consensus 75 ~~~~~~~l----~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARL----KAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHH----HHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 99998888 8999999887654 2245789999999999996
No 48
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=5.2e-16 Score=113.43 Aligned_cols=113 Identities=19% Similarity=0.295 Sum_probs=78.4
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEe----cCCcccccCCceeeEEE
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYS----YGVTEYTKGNAYAQVAI 195 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~----~~~~~~~~~~g~~hi~~ 195 (258)
++.++.|.|+|+++|.+||+++|||++..... . ...+ . . ...+.+... ....+...+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~-~~~~-~--~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----E-NVTF-E--G---GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----c-eEEE-e--c---cceeccchhhhccCCcccccccCCceEEEE
Confidence 57899999999999999999999998764321 1 1111 1 0 111111100 00111122345678999
Q ss_pred EECChHHHHHHHHHHHHHhCC-eeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 196 STDDVYKSAEVVNLVTQELGG-KITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 196 ~v~d~~~~~~~l~~~~~~~G~-~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
.|+|+++.+++| +++|+ ++..+|...++ +.+.++|+|||||.|||.+.
T Consensus 71 ~v~dvd~~~~~l----~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKL----KRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHH----HhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 999999999999 88875 78777776654 46899999999999999864
No 49
>PRK06724 hypothetical protein; Provisional
Probab=99.70 E-value=5.7e-16 Score=114.44 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=74.3
Q ss_pred CCCCceeeeEEecChhhHHHHHHHhc---CCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeE
Q 025083 117 TPEPLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQV 193 (258)
Q Consensus 117 ~~~~i~hv~l~v~d~~~s~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi 193 (258)
+..+++||+|.|+|+++|++||+++| |++...... + . .+ ...+.|.. ... ......|..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~-~--~g--~~~l~l~~-~~~-~~~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------Y-S--TG--ESEIYFKE-VDE-EIVRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------e-e--CC--CeeEEEec-CCc-cccCCCCceeE
Confidence 45679999999999999999999976 555432111 1 1 10 11222211 111 01123478899
Q ss_pred EEEE---CChHHHHHHHHHHHHHhCCeeecCCccCCC--CCeeEEEEECCCCCEEEEEcc
Q 025083 194 AIST---DDVYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 194 ~~~v---~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iel~~~ 248 (258)
+|.| ++++++.+++ +++|+++..+|...+. .+.+.+||+|||||.|||+..
T Consensus 68 af~v~~~~dvd~~~~~l----~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 68 CYQAINRKVVDEVAEFL----SSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred EEecCChHHHHHHHHHH----HHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 9999 4566666555 9999999888765432 334788999999999999866
No 50
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.69 E-value=1e-15 Score=112.66 Aligned_cols=119 Identities=22% Similarity=0.337 Sum_probs=84.8
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCC-ccceeEEEeeecCCCceeEEEEEEecCCcc-c-----ccCCceeeE
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSP-ELKCALAMLGYAEEDQTTVLELAYSYGVTE-Y-----TKGNAYAQV 193 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~-----~~~~g~~hi 193 (258)
+.||+|.|+|++++.+||+++|||+........ ..+...+++..+ ...+++........ . ..+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999987655432 223445566542 45566665432211 1 235689999
Q ss_pred EEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCC--CCEEEEEc
Q 025083 194 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPD--GWKTVLVD 247 (258)
Q Consensus 194 ~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPd--G~~iel~~ 247 (258)
+|.|+|++++++++ +++|+++..+|.....++..++++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l----~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARL----KAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHH----HHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 99999999999988 8999999887764333333444455555 99999975
No 51
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=2.1e-15 Score=111.31 Aligned_cols=117 Identities=24% Similarity=0.265 Sum_probs=81.6
Q ss_pred CceeeeEEecChhhHHHHHHHhc---CCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc---cccCCceeeE
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE---YTKGNAYAQV 193 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hi 193 (258)
+|+||.|.|+|++++.+||+++| ||++...... . ..+... . .+..+.+........ ...+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~---~--~~~~~~-~--~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED---G--RSWRAG-D--GGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc---C--ceEEec-C--CceEEEEEecccCCCcccccCCcCeeEE
Confidence 57899999999999999999999 9998776421 1 122221 1 145566654332211 1234578999
Q ss_pred EEEECC---hHHHHHHHHHHHHHhCCeeecCCccC--CCCCeeEEEEECCCCCEEEEEcc
Q 025083 194 AISTDD---VYKSAEVVNLVTQELGGKITRQPGPI--PGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 194 ~~~v~d---~~~~~~~l~~~~~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
+|.|+| ++++++++ +++|+++...|... ...+.+++||+||||++|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARL----AKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999986 55555555 89999998876542 22346789999999999999853
No 52
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=2.2e-15 Score=110.70 Aligned_cols=119 Identities=23% Similarity=0.278 Sum_probs=80.5
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCc-ccccCCceeeEEEEE
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-EYTKGNAYAQVAIST 197 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~g~~hi~~~v 197 (258)
++++|+.|.|+|++++.+||+++|||++..... ..+++..++ ....+.+....... ......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 368999999999999999999999999887631 124444332 24556665433221 122335789999999
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
++. +.++++.++++++|+++.. +.... ..+.+||+|||||+|||....
T Consensus 73 ~~~-~~v~~~~~~l~~~g~~~~~-~~~~~--~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 73 PSR-ADLAAALRRLIELGIPLVG-ASDHL--VSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CCH-HHHHHHHHHHHHcCCceec-ccccc--ceeEEEEECCCCCEEEEEEec
Confidence 872 2333444445999998754 32222 247899999999999998654
No 53
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.68 E-value=2.6e-15 Score=108.85 Aligned_cols=114 Identities=22% Similarity=0.296 Sum_probs=80.3
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 198 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 198 (258)
.+++|+.|.|+|++++.+||+++|||++..... ..+++..+.. .++.+.+... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSED-DHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCC-CcEEEEEEeC-------CCCCceeEEEEcC
Confidence 368999999999999999999999999886542 1244443311 2444444322 1247889999998
Q ss_pred ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 199 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 199 d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
+.+ .++++.++++++|+++...|...++ .++.+||+||+||+||++..
T Consensus 67 ~~~-~v~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEE-DLEALAAHLEAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHH-HHHHHHHHHHHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEc
Confidence 632 2333334448999999887653333 45889999999999999865
No 54
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=8e-16 Score=112.75 Aligned_cols=92 Identities=47% Similarity=0.937 Sum_probs=70.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCC-----------CCeEEEEeccCCCCceeEEEEEeecCCCcccCC
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----------EKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIG 90 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 90 (258)
.++.|++|+|+|+++|++||+++|||++..+...++ +.+..++++..+......+||+.+.+..+++.|
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 368999999999999999999999999887665554 445556676543445668999987766556666
Q ss_pred CCeeeEEEEcCC-----------------------CCCCcEEEEEE
Q 025083 91 TGFGHLAIATED-----------------------DPDGYIFELIQ 113 (258)
Q Consensus 91 ~~~~hia~~v~d-----------------------DP~G~~iel~~ 113 (258)
.+..|+|+.+.| ||||+.|||+.
T Consensus 81 ~~~~hlav~~~d~~~~l~~~Gv~~~~~~~~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 NDFLGITIHSKQAVSNAKKHNWPVTEVEDGVYEVKAPGGYKFYLID 126 (127)
T ss_pred CCEEEEEEECHHHHHHHHHCCCceecCCCCEEEEECCCCCEEEEec
Confidence 666666666655 99999999974
No 55
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.68 E-value=3.3e-15 Score=111.23 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=83.3
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECC
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD 199 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d 199 (258)
+|.|+.|.|+|++++.+||+++|||++...... ....++..+. .....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765431 1234444331 12345555443222111233578899999998
Q ss_pred hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchhh
Q 025083 200 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 251 (258)
Q Consensus 200 ~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 251 (258)
++++ +.+.+++.++|+++..++.. +.++.+|++||+||+|||+.....
T Consensus 76 ~~~v-~~~~~~l~~~G~~~~~~~~~---~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDL-RDLYERLRAAGITPVWPVDH---GNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHH-HHHHHHHHHCCCCccccCCC---CceeEEEEECCCCCEEEEEEcCCC
Confidence 6543 23334458999998765422 234789999999999999976643
No 56
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=4e-15 Score=109.26 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=78.2
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEec--------C--CcccccCCce
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSY--------G--VTEYTKGNAY 190 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--------~--~~~~~~~~g~ 190 (258)
+.|+.|.|+|++++.+||+++|||+....... ..+.. +..+ ...+.+.... . +.......+.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHES--GDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCC--CcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 46999999999999999999999987643221 11211 1111 1122221110 0 0001112244
Q ss_pred eeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 191 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 191 ~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
.|++|.|+|++++++++ +++|+++..+|...++ +.+.++++|||||.|+|+++
T Consensus 73 ~~~~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARA----VEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHH----HHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 68999999999999999 8999999888766554 45788999999999999864
No 57
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=7.3e-15 Score=107.25 Aligned_cols=115 Identities=21% Similarity=0.232 Sum_probs=82.2
Q ss_pred eeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCc--ccccCCceeeEEEEECChH
Q 025083 124 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT--EYTKGNAYAQVAISTDDVY 201 (258)
Q Consensus 124 v~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~g~~hi~~~v~d~~ 201 (258)
+.|.|+|++++.+||+++||++.......+++.+....+..++ ..+.+....... +...+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 4689999999999999999999887654333333334444332 344444221110 0122346779999999999
Q ss_pred HHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 202 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 202 ~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
++++++ .+.|+++..+|...++ +.+.++++||||++|+|.+
T Consensus 81 ~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARA----VAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHH----HHCCCeEecCcccccc-cceEEEEECCCCCEEEEec
Confidence 999888 8899999988865544 4689999999999999986
No 58
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=4.8e-15 Score=107.96 Aligned_cols=111 Identities=19% Similarity=0.201 Sum_probs=78.2
Q ss_pred eeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCc-c----cccCCceeeEEEEE
Q 025083 123 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-E----YTKGNAYAQVAIST 197 (258)
Q Consensus 123 hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~----~~~~~g~~hi~~~v 197 (258)
+..|.|+|+++|.+||+++|||+...... . ...+..++ ....+.+....... + ...+.+ .|++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~-----~-~~~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD-----W-YVSLRSPD--GGVELAFMLPGHETVPAAQYQFQGQG-LILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC-----c-EEEEecCC--CceEEEEccCCCCCCcchhcccCCce-EEEEEEE
Confidence 57899999999999999999999876421 1 22333222 12444443221110 0 112223 4899999
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
+|++++++++ +++|+++..+|...+. +.+.++|+|||||+|||++
T Consensus 75 ~did~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERL----KAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHH----HhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 9999999999 8899999888766554 4588999999999999985
No 59
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.66 E-value=5.2e-15 Score=106.68 Aligned_cols=109 Identities=21% Similarity=0.224 Sum_probs=78.9
Q ss_pred eeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHH
Q 025083 123 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYK 202 (258)
Q Consensus 123 hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~ 202 (258)
...|.|+|++++.+||+++|||+..... + ...++..+.. .++.+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~-----~-~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDH-----G-WIATFASPQN-MTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcC-----C-ceEEEeecCC-CCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 3578999999999999999999976431 1 2233333221 234455432211 12345699999999999
Q ss_pred HHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 203 SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 203 ~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
++++| +++|+++..+|...++ +.+.+||.||+||+|+|+++
T Consensus 71 ~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARA----VAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHH----HhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 99999 8999999888766554 45788999999999999875
No 60
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.4e-16 Score=113.83 Aligned_cols=120 Identities=30% Similarity=0.430 Sum_probs=80.3
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeE-------------------EEeeecCCCceeEEEEEEecC
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCAL-------------------AMLGYAEEDQTTVLELAYSYG 180 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~l~~~~~ 180 (258)
.+.|.+++++|+.+|+.||++++|+.+.....+.+..++. +++-. ....++|..+++
T Consensus 22 ~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~----~~~~~ELthn~G 97 (170)
T KOG2944|consen 22 LLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFS----RNAKLELTHNWG 97 (170)
T ss_pred hhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEec----ccCceeeecCCC
Confidence 4567777777777777777777776665433322211111 22211 145678888776
Q ss_pred Ccc-----cc----cCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 181 VTE-----YT----KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 181 ~~~-----~~----~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+.. +. .+.|++||||.|+|+++++++| +++|+++...|.. +....++|+.||||+.|||....
T Consensus 98 tes~~~~~~~ngN~~prGfgHIci~V~di~sac~~l----kekGV~f~Kk~~d--Gk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 98 TESPPDQAYLNGNKEPRGFGHICIEVDDINSACERL----KEKGVRFKKKLKD--GKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred CCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHH----HHhCceeeecCCC--ccccceeEEECCCCCeEEEeecC
Confidence 542 21 2238999999999999999999 8999998776532 22236899999999999998653
No 61
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.65 E-value=3.9e-15 Score=108.54 Aligned_cols=113 Identities=26% Similarity=0.305 Sum_probs=78.2
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 198 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 198 (258)
.+|.|+.|.|+|++++++||+++|||+...... ++ +++..++. ..+.+.+... ..++..|++|.|+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GI--VYLRATGS-EHHILRLRRS-------DRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CE--EEEECCCC-ccEEEEeccC-------CCCCCceEEEEeC
Confidence 478999999999999999999999999765432 12 33442221 2333333211 1236789999996
Q ss_pred C---hHHHHHHHHHHHHHhCCeeecCCccC-CCCCeeEEEEECCCCCEEEEEcch
Q 025083 199 D---VYKSAEVVNLVTQELGGKITRQPGPI-PGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 199 d---~~~~~~~l~~~~~~~G~~i~~~p~~~-~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+ ++++.+++ +++|+++..+|... ..++++.++|+||+||+|||+...
T Consensus 68 ~~~~l~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQV----AARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHH----HHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 5 44444444 89999998776433 222457899999999999998653
No 62
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.65 E-value=4.2e-15 Score=106.28 Aligned_cols=108 Identities=23% Similarity=0.294 Sum_probs=74.9
Q ss_pred EEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHHHHH
Q 025083 126 LRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAE 205 (258)
Q Consensus 126 l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~~ 205 (258)
|.|+|++++++||+++|||+...... .+ +.+..+.........+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DY--VDFSLGFRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SE--EEEEETEEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----Ce--EEEEeccchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999888432 12 222221100011222322221 12234578899999999999999
Q ss_pred HHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEE
Q 025083 206 VVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 246 (258)
Q Consensus 206 ~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 246 (258)
++ +++|+++..+|...++ +.+.++|.|||||+|||+
T Consensus 73 ~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RL----KELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HH----HHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HH----HHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 99 8999999888877555 468999999999999986
No 63
>PLN02367 lactoylglutathione lyase
Probab=99.65 E-value=2.6e-15 Score=119.66 Aligned_cols=95 Identities=37% Similarity=0.741 Sum_probs=77.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCC---------------ceeEEEEEeecCCCc
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQ---------------SYFVVELTYNYGVTS 86 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~~ 86 (258)
..++|++|+|+|+++|++||+++|||++..+.+.+++.++.+|+++++.. ....|||+++++...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 58999999999999999999999999999988888888999999753311 134799998876431
Q ss_pred ------ccCC----CCeeeEEEEcCC-------------------------------CCCCcEEEEEECCC
Q 025083 87 ------YDIG----TGFGHLAIATED-------------------------------DPDGYIFELIQRGP 116 (258)
Q Consensus 87 ------~~~~----~~~~hia~~v~d-------------------------------DP~G~~iel~~~~~ 116 (258)
+..+ .|+.||||.|+| ||||+.|||++...
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEeccc
Confidence 3222 489999999998 99999999998764
No 64
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.64 E-value=7.1e-15 Score=106.29 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=76.5
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 198 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 198 (258)
.++.|+.|.|+|+++|.+||++ |||+...+.. ..+++..++. .+..+.+. . ....++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~-~~~~~~~~-~------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGT-DPFVYVAR-K------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCC-ccEEEEcc-c------CCcCcccEEEEEEC
Confidence 4689999999999999999998 9998765531 1234443221 12222211 1 11247889999999
Q ss_pred ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 199 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 199 d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
|.+++.+.+ +++|.++...+. .++ +++++||+|||||.|||+..
T Consensus 67 ~~~~~~~~~----~~~g~~~~~~~~-~~~-~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAA----ALPGASVIDDLE-APG-GGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHH----HcCCCeeecCCC-CCC-CceEEEEECCCCCEEEEEec
Confidence 988777777 778998765432 232 45789999999999999754
No 65
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=8.1e-15 Score=107.43 Aligned_cols=118 Identities=22% Similarity=0.238 Sum_probs=77.0
Q ss_pred ceeeeEEecChhhHHHHHHHh---cCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 121 LCQVMLRVGDLGRSIKFYEKA---LGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
+.|+.|.|+|+++|.+||+++ |||+...+.. + . . +.+..+. ....+.+.......+ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~-~-~-~~~~~~~--~~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P-G-A-VGYGKGG--GGPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C-c-e-eEeccCC--CCceEEEeccccCCC-CCCCCceEEEEEC
Confidence 579999999999999999999 6898765431 1 1 2 2233221 134455543322111 1223457999999
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCC--CCeeEEEEECCCCCEEEEEc
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iel~~ 247 (258)
+|.+ .++++.+++.++|+.+..+|...+. ...+.+||+|||||.|||+.
T Consensus 73 ~~~~-~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 73 PSRE-AVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred CCHH-HHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 9842 3334445558999998877765443 23457899999999999973
No 66
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=8e-15 Score=107.09 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=77.3
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCc------ccccCCceeeEE
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT------EYTKGNAYAQVA 194 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~g~~hi~ 194 (258)
+.++.|.|+|++++.+||+++|||++..+. ++ ..+++..++. ..+.+....... +.....+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~--~~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DR--RLAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CC--ceEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 468999999999999999999999987642 11 2344444432 233333221110 111234788999
Q ss_pred EEEC--ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 195 ISTD--DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 195 ~~v~--d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
|.++ |++++++++ .++|+++...+. . ..+++.+||+||||++|||+++
T Consensus 73 ~~v~~~dl~~~~~~l----~~~g~~~~~~~~-~-~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHL----EAKGVAIESEVQ-W-PRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHH----HhcCCceecccc-C-CCCeeEEEEECCCCCEEEEecC
Confidence 9995 566666666 899999876553 2 3345889999999999999863
No 67
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=7.9e-15 Score=106.02 Aligned_cols=112 Identities=23% Similarity=0.224 Sum_probs=74.9
Q ss_pred eeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc-cccCCceeeEEEEECChHH
Q 025083 124 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAISTDDVYK 202 (258)
Q Consensus 124 v~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~~~v~d~~~ 202 (258)
+.|.|+|+++|.+||+++||++...... .+.. +..++ ...+.+.......+ .....+..|++|.|+|.+
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~--~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~- 71 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TFAL--FVLGS---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGA- 71 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ceEE--EEeCC---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHH-
Confidence 6799999999999999999998765421 2322 22222 23455543332211 112346789999998732
Q ss_pred HHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 203 SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 203 ~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
.++++.+++.++|+++..+|...+. ++.++|+|||||+|||+.
T Consensus 72 ~~~~~~~~~~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 72 AVDALYAEWQAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHHCCCeEecCccccCC--ccEEEEECCCCCEEEeeC
Confidence 2233334448999999988866544 367899999999999974
No 68
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.64 E-value=7.7e-15 Score=107.41 Aligned_cols=109 Identities=29% Similarity=0.344 Sum_probs=75.5
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC-
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD- 198 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~- 198 (258)
++.|+.|.|+|++++.+||+++|||+....... ..++..+. ..+.+...... ...++..|++|.++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~~------~~~~~~~~----~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWDK------GAYLEAGD----LWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecCC------ceEEecCC----EEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 578999999999999999999999998765321 12333221 22233221111 12356889999994
Q ss_pred -ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 199 -DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 199 -d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
|++++++++ +++|+++..++.. .++.+||+|||||+|||+...
T Consensus 68 ~dl~~~~~~l----~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKL----RQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHH----HHcCCcccCCCCC----CccEEEEECCCCCEEEEEeCC
Confidence 566666666 8999998764432 137899999999999999765
No 69
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.63 E-value=1.6e-14 Score=103.79 Aligned_cols=109 Identities=25% Similarity=0.267 Sum_probs=78.0
Q ss_pred eEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHHHH
Q 025083 125 MLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSA 204 (258)
Q Consensus 125 ~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~ 204 (258)
.|.|+|++++.+||+++|||+...... .. ...++..+ ...+.+.......+. ...+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 689999999999999999999876543 11 22334422 345555443322111 2346678999999999999
Q ss_pred HHHHHHHHHhCCe-eecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 205 EVVNLVTQELGGK-ITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 205 ~~l~~~~~~~G~~-i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
+++ +++|++ +..++...++ +.+.++++||+|+.|||++
T Consensus 74 ~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AEL----KAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHH----HHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 998 889999 5655554433 4578999999999999975
No 70
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.63 E-value=7.7e-15 Score=105.83 Aligned_cols=109 Identities=23% Similarity=0.300 Sum_probs=72.7
Q ss_pred eeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC--Ch
Q 025083 123 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD--DV 200 (258)
Q Consensus 123 hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~--d~ 200 (258)
|+.|.|+|++++.+||+++|||+...+... ..++..+ ...+.+...... ...+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~------~~~~~~~----~~~l~~~~~~~~--~~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK------EAYFELA----GLWICLMEEDSL--QGPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc------eeEEEec----CeEEEeccCCCc--CCCCCCccEEEEEcCHHHH
Confidence 799999999999999999999998655321 1223322 233433322111 112346789999995 45
Q ss_pred HHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 201 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 201 ~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
+++++++ +++|+++...+.. ....++.+|++|||||+|||++.
T Consensus 69 ~~~~~~l----~~~G~~~~~~~~~-~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERL----KALGVEMKPERPR-VQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHH----HHcCCccCCCccc-cCCCceEEEEECCCCCEEEEEeC
Confidence 5555555 8999998644322 22235889999999999999853
No 71
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1e-14 Score=107.22 Aligned_cols=113 Identities=24% Similarity=0.234 Sum_probs=73.8
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCC-----ccc--ccCCceeeE
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV-----TEY--TKGNAYAQV 193 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-----~~~--~~~~g~~hi 193 (258)
+.++.|.|+|+++|++||++ |||+.......+. . ..+..++ ...+.+...... .+. ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--A--ACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--e--EEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 36899999999999999976 9998764332221 1 1122221 234444322110 000 123356789
Q ss_pred EEEECC---hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 194 AISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 194 ~~~v~d---~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
+|.|++ ++++++++ +++|+++..+|...++ .+.+||+|||||+|||+.
T Consensus 73 ~f~v~~~~~vd~~~~~l----~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKA----LAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHH----HHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 999986 55555555 9999999887766543 467899999999999974
No 72
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.5e-15 Score=116.17 Aligned_cols=119 Identities=39% Similarity=0.698 Sum_probs=100.6
Q ss_pred CCCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCc-----------cceeEEEeeecCCCceeEEEEEEecCCcccc
Q 025083 117 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----------LKCALAMLGYAEEDQTTVLELAYSYGVTEYT 185 (258)
Q Consensus 117 ~~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 185 (258)
+..+.-|+.+.|.|.+++++||+++|||++.+..++++ +.|+-+++++++++.|++++|+++++...+.
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Ye 93 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYE 93 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcccee
Confidence 45678899999999999999999999999998877765 5688899999999999999999999988899
Q ss_pred cCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 186 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 186 ~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
.|+++.||.+.++|+-..++.+ +..|.+ .++...+++.||||+.|+|++.
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v----~~p~~~---------~~g~~~~~v~dPdGykF~l~~~ 143 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKV----NAPGGK---------GSGCGIAFVKDPDGYKFYLIDR 143 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHh----cCcCCc---------ccceEEEEEECCCCcEEEEecc
Confidence 9999999999999876666666 333331 2234678899999999999974
No 73
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.61 E-value=1.7e-14 Score=105.56 Aligned_cols=114 Identities=19% Similarity=0.181 Sum_probs=73.8
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEec-----CCcccccCCceeeEEE
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSY-----GVTEYTKGNAYAQVAI 195 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-----~~~~~~~~~g~~hi~~ 195 (258)
++||+|.|+|+++|++||++ |||++....... ..+.+..+. ...+.+.... .+.....+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~----~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE----PHVEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC----CcEEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 999875432210 112222221 1223222111 0101112335567888
Q ss_pred EEC---ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 196 STD---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 196 ~v~---d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
.+. |++++++++ +++|+++..+|...+. +.+.++|+|||||.|||+.
T Consensus 73 ~~~~~~dvd~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~~ 122 (122)
T cd07235 73 LCETPAEVDALYAEL----VGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLFA 122 (122)
T ss_pred EcCCHHHHHHHHHHH----HHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEeC
Confidence 876 677777777 8999999888766554 4578899999999999973
No 74
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.61 E-value=3.6e-14 Score=103.56 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=75.3
Q ss_pred eeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChH
Q 025083 122 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 201 (258)
Q Consensus 122 ~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~ 201 (258)
.|+.|.|+|+++|.+||+++||++...... ++ ..+.. +. ....+.+..... ...++..|++|.|+|.+
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~-~~~~~-~~--~~~~~~~~~~~~----~~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DY-AKFLL-ED--PRLNFVLNERPG----APGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----Ce-eEEEe-cC--CceEEEEecCCC----CCCCCeeEEEEEeCCHH
Confidence 599999999999999999999998765432 11 22222 11 133333332211 11157889999999843
Q ss_pred HHHHHHHHHHHHhCCeeecCCccCC-CCCeeEEEEECCCCCEEEEEcc
Q 025083 202 KSAEVVNLVTQELGGKITRQPGPIP-GLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 202 ~~~~~l~~~~~~~G~~i~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~ 248 (258)
+ ++++.+++.++|+++..+|.... .+..+.+|++||+||+|||+..
T Consensus 71 d-l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 71 E-VAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred H-HHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 3 23333444999999887654332 2224789999999999999864
No 75
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.61 E-value=1e-14 Score=106.98 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=71.8
Q ss_pred eeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCC---ccc--ccCCceeeEEE--
Q 025083 123 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV---TEY--TKGNAYAQVAI-- 195 (258)
Q Consensus 123 hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~--~~~~g~~hi~~-- 195 (258)
||.|.|+|+++|++||+++|||++..... .+ +.+...+ ....+.+...... ... ....+..|++|
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--ccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999998764321 11 1222111 1222222211100 000 11124566654
Q ss_pred EECChHHHHHHHHHHHHHhCCeeecCCccCC---CCCeeEEEEECCCCCEEEEEc
Q 025083 196 STDDVYKSAEVVNLVTQELGGKITRQPGPIP---GLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 196 ~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~---~~~~~~~~~~DPdG~~iel~~ 247 (258)
.++|+++++++| +++|+++..+|.... .++.+.+||+|||||+|||.+
T Consensus 74 ~~~dv~~~~~~l----~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERL----EAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHH----HHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 557788888777 899999988775421 223588999999999999975
No 76
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.60 E-value=1.3e-13 Score=118.80 Aligned_cols=189 Identities=17% Similarity=0.267 Sum_probs=124.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCC--CeEEEEeccCCCCceeEEEEEeecCC-----------------
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE--KYSNAFLGFGPEQSYFVVELTYNYGV----------------- 84 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~----------------- 84 (258)
++||.++|+|.+++..+|+..|||+.+.......+ ......+. ++.+.+.++.+...
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r----~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLR----SGDLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEE----eCCEEEEEeCCCCCccccccccccccccccc
Confidence 58999999999999999999999998765432122 12222233 23344555544211
Q ss_pred --Cc------ccCCCCeeeEEEEcCC-----------------------CC--------------CCcEEEEEECCC---
Q 025083 85 --TS------YDIGTGFGHLAIATED-----------------------DP--------------DGYIFELIQRGP--- 116 (258)
Q Consensus 85 --~~------~~~~~~~~hia~~v~d-----------------------DP--------------~G~~iel~~~~~--- 116 (258)
.. ...|.++.-+||+|+| |. .|..+.|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 1245788899999999 21 222333444310
Q ss_pred --------------------CCCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCc-----cceeEEEeeecCCCcee
Q 025083 117 --------------------TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----LKCALAMLGYAEEDQTT 171 (258)
Q Consensus 117 --------------------~~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 171 (258)
...+|+||++.|++++++..||+++|||+.......++ .+.....+..+. ...
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v 234 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMV 234 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcE
Confidence 02368999999999999999999999998876543221 123444455333 245
Q ss_pred EEEEEEecC----Ccc------cccCCceeeEEEEECChHHHHHHHHHHHHHh----CCeeecCC
Q 025083 172 VLELAYSYG----VTE------YTKGNAYAQVAISTDDVYKSAEVVNLVTQEL----GGKITRQP 222 (258)
Q Consensus 172 ~l~l~~~~~----~~~------~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~----G~~i~~~p 222 (258)
.+.|..+.. ..+ ...|.|++||||.|+||.+.+++| +++ |+++...|
T Consensus 235 ~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~L----ra~~~~~Gv~fL~~P 295 (398)
T PLN02875 235 LLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREM----RARSHIGGFEFMPPP 295 (398)
T ss_pred EEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHH----HhccccCCeecCCCC
Confidence 666665421 111 234679999999999999999999 777 99998754
No 77
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.60 E-value=3.7e-14 Score=103.59 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=75.0
Q ss_pred eeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHH
Q 025083 123 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYK 202 (258)
Q Consensus 123 hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~ 202 (258)
...|.|+|+++|++||++ |||+...+... . .+.+..+ ...+.|...... .......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 467899999999999999 99998765421 1 2334432 235555543211 112234579999999999
Q ss_pred HHHHHHHHHHHhCCeee-------cCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 203 SAEVVNLVTQELGGKIT-------RQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 203 ~~~~l~~~~~~~G~~i~-------~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
++++| +++|+++. .+|...+ .+.+.++|+|||||+|+|.+.
T Consensus 72 ~~~~l----~~~G~~~~~~~~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEF----RAAGLPETGSGIPRITPPEDQP-WGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHH----HHhCccccccCCCcccCCcCCC-CceeEEEEECCCCCEEEeecC
Confidence 99999 88999853 2232222 356889999999999999875
No 78
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.60 E-value=3.1e-14 Score=101.27 Aligned_cols=112 Identities=29% Similarity=0.383 Sum_probs=81.9
Q ss_pred eeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHH
Q 025083 123 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYK 202 (258)
Q Consensus 123 hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~ 202 (258)
|+.|.|+|++++.+||+++|||+........ .....++..+ ...+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~--~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNG--GAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccC--CEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 7899999999999999999999988765321 1234445532 355666544332111234578999999999988
Q ss_pred HHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEE
Q 025083 203 SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 245 (258)
Q Consensus 203 ~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 245 (258)
..+++ .++|+.+..++.. ...+.+.+++.||+|+.|+|
T Consensus 75 ~~~~l----~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERL----KAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHH----HHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 88888 8899998877641 23345899999999999986
No 79
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.59 E-value=3.8e-14 Score=107.74 Aligned_cols=108 Identities=58% Similarity=1.023 Sum_probs=79.2
Q ss_pred chhhccCcccccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccC
Q 025083 10 NAELLEWPKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDI 89 (258)
Q Consensus 10 ~~~~~~~~~~~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 89 (258)
.++|+.=+....++++||.|.|+|++++++||+++|||++..+...+...+..++++.+.......+++.......+...
T Consensus 4 ~~~~~~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (150)
T TIGR00068 4 SGDLVADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDL 83 (150)
T ss_pred ccccccCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccC
Confidence 35677667777899999999999999999999999999987654434444456677654333444566654433222333
Q ss_pred CCCeeeEEEEcCC---------------------------------CCCCcEEEEEECCCC
Q 025083 90 GTGFGHLAIATED---------------------------------DPDGYIFELIQRGPT 117 (258)
Q Consensus 90 ~~~~~hia~~v~d---------------------------------DP~G~~iel~~~~~~ 117 (258)
+.++.|++|.|+| ||+|+.|||++....
T Consensus 84 ~~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 84 GNGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred CCceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCch
Confidence 4578999999988 999999999987643
No 80
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.59 E-value=4.1e-14 Score=102.10 Aligned_cols=106 Identities=23% Similarity=0.250 Sum_probs=71.5
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceee--EEEEE
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQ--VAIST 197 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~h--i~~~v 197 (258)
+|.|+.|.|+|+++|.+||+ +|||++..+.. ...+...+. .+..+.+... . ..+..| +.+.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~~~~~~~~~--~~~~~~~~~~--~-----~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD------GLELRTAGN--DHRWARLLEG--A-----RKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------ceEEEecCC--CceEEEeecC--C-----CCceeeEEEEeEh
Confidence 68999999999999999997 69999865421 122222222 2333433211 1 123444 45555
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
+|+++++++| +++|+++..+|.. . ..+.+||+||+||+|||...
T Consensus 66 ~d~~~~~~~l----~~~Gi~~~~~~~~--~-~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 66 DDFAAFARHL----EAAGVALAAAPPG--A-DPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhHHHHHHHH----HHcCCceecCCCc--C-CCCEEEEECCCCCEEEEecC
Confidence 7888888888 8999998876522 2 23678999999999999853
No 81
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.59 E-value=3e-14 Score=111.21 Aligned_cols=95 Identities=36% Similarity=0.706 Sum_probs=74.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCC---------------ceeEEEEEeecCCC
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQ---------------SYFVVELTYNYGVT 85 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~ 85 (258)
-.+++|++|+|+|+++|++||+++|||++..+...+++.++.+|++++... ....|||+.+.+..
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 468999999999999999999999999998887666667888888753211 23478998765432
Q ss_pred c------cc----CCCCeeeEEEEcCC-------------------------------CCCCcEEEEEECC
Q 025083 86 S------YD----IGTGFGHLAIATED-------------------------------DPDGYIFELIQRG 115 (258)
Q Consensus 86 ~------~~----~~~~~~hia~~v~d-------------------------------DP~G~~iel~~~~ 115 (258)
. +. .+.|+.|+||.|+| ||||+.|||++..
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 1 21 12489999999998 9999999999865
No 82
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.58 E-value=8.4e-14 Score=100.50 Aligned_cols=121 Identities=26% Similarity=0.336 Sum_probs=87.0
Q ss_pred CCCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEE
Q 025083 117 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIS 196 (258)
Q Consensus 117 ~~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~ 196 (258)
++..+.|..|.|+|++++++||.++|||+........+..+...... +.. ....+ .... ....+.....+.|.
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~-~~~-~gG~l--~~~~---~~~p~~~~~~iy~~ 78 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPAD-GAG-AGGGL--MARP---GSPPGGGGWVIYFA 78 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECC-Ccc-cccee--ccCC---cCCCCCCCEEEEEe
Confidence 45678999999999999999999999999877644322223222222 111 11221 1111 11222456679999
Q ss_pred ECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 197 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 197 v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
|+|+++.++++ .++|.+|+.++.+.++ .++++.+.||.||+|.|.+..
T Consensus 79 v~did~~l~rv----~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERV----VAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHH----HhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 99999999999 8999999999887775 568999999999999998753
No 83
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.54 E-value=1.2e-13 Score=117.16 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=79.0
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 198 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 198 (258)
.++.|+.|.|+|++++.+||+++|||++..+... .+++.......+..+.+.. ....++.|++|.|+
T Consensus 3 ~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~-------~~~~g~~hiaf~v~ 69 (303)
T TIGR03211 3 MRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTE-------ADTAGLDHMAFKVE 69 (303)
T ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeecc-------CCCCceeEEEEEeC
Confidence 5789999999999999999999999998765321 2233321111133343321 11347899999998
Q ss_pred C---hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchh
Q 025083 199 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 250 (258)
Q Consensus 199 d---~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 250 (258)
+ +++++++| +++|+++...|.....+.++.+||+||||+.|||++...
T Consensus 70 ~~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 70 SEADLERLVKRL----EAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred CHHHHHHHHHHH----HHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 5 44445555 899999876654222223478999999999999997554
No 84
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.54 E-value=1.8e-13 Score=115.48 Aligned_cols=113 Identities=24% Similarity=0.259 Sum_probs=78.6
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEE
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 197 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 197 (258)
..++.|+.|.|+|++++++||+++|||++..+.. ..+++........+.+.+... ...+..|++|.|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~v 68 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFRV 68 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcCccEEEEEe
Confidence 3579999999999999999999999999876532 123333211111333444321 124688999999
Q ss_pred CC---hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchh
Q 025083 198 DD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 250 (258)
Q Consensus 198 ~d---~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 250 (258)
++ ++++.++| +++|+++...+.+ + ..+.+||+|||||.|||+....
T Consensus 69 ~~~~dl~~~~~~l----~~~Gv~v~~~~~~--~-~~~~~~~~DPdG~~iEl~~~~~ 117 (294)
T TIGR02295 69 SKEEDLDKAADFF----QKLGHPVRLVRDG--G-QPEALRVEDPFGYPIEFYFEME 117 (294)
T ss_pred CCHHHHHHHHHHH----HhcCCcEEeecCC--C-CceEEEEECCCCCEEEEEEchh
Confidence 85 44445555 8999998765432 2 3489999999999999997543
No 85
>PRK10291 glyoxalase I; Provisional
Probab=99.53 E-value=1.5e-13 Score=101.70 Aligned_cols=91 Identities=52% Similarity=0.999 Sum_probs=68.5
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC-----
Q 025083 28 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED----- 102 (258)
Q Consensus 28 ~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d----- 102 (258)
+|.|+|+++|++||+++|||++..+...++..+..+++..++......+++....+..+...+.++.|+||.|+|
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 478999999999999999999887665555566778877654333445677654443333445688999999998
Q ss_pred ----------------------------CCCCcEEEEEECCCCC
Q 025083 103 ----------------------------DPDGYIFELIQRGPTP 118 (258)
Q Consensus 103 ----------------------------DP~G~~iel~~~~~~~ 118 (258)
||||+.|||++.....
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 9999999999876433
No 86
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=3e-13 Score=97.75 Aligned_cols=104 Identities=21% Similarity=0.219 Sum_probs=71.4
Q ss_pred eeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChHHH
Q 025083 124 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKS 203 (258)
Q Consensus 124 v~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~ 203 (258)
..|.|+|+++|++||++ |||++..... ..+++..+ ...+.+...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~----~~~l~l~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLG----NCAFYLQDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcC----CEEEEeecCCCc----ccccCCEEEEEECCHHHH
Confidence 56889999999999987 9999876531 13445433 233434321111 112345789999999999
Q ss_pred HHHHHHHHHHhCCeee-----cCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 204 AEVVNLVTQELGGKIT-----RQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 204 ~~~l~~~~~~~G~~i~-----~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
+++| +++|+++. .+|...+ .+.+.++|+|||||+|+|.+
T Consensus 70 ~~~l----~~~G~~~~~~~~~~~~~~~~-~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHI----KALGLPKKFPGVKLPPITQP-WWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHH----HHcCCcccccceecCccccC-CCcEEEEEECCCccEEEeeC
Confidence 9999 88998753 2333223 34689999999999999864
No 87
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.51 E-value=4.6e-13 Score=97.52 Aligned_cols=110 Identities=25% Similarity=0.243 Sum_probs=72.9
Q ss_pred eeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCC-----c-ccccCCceeeEEEEE
Q 025083 124 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV-----T-EYTKGNAYAQVAIST 197 (258)
Q Consensus 124 v~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-----~-~~~~~~g~~hi~~~v 197 (258)
|.|.|+|++++.+||+++|||++..+.. . ...++..+ ...+.+...... . ....+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~---~--~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN---D--GVAFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC---C--ceEEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 6899999999999999999999876511 1 22334432 234554432110 0 011222344566666
Q ss_pred C---ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 198 D---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 198 ~---d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
. |++++++++ +++|+++..+|...++ +++.++++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARA----AAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHH----HhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 4 566666666 8999999887765543 4688999999999999975
No 88
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.50 E-value=2.1e-13 Score=97.95 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=74.5
Q ss_pred eeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc--cccCCceeeEEEEECC
Q 025083 122 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAISTDD 199 (258)
Q Consensus 122 ~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hi~~~v~d 199 (258)
+||+|.|+|++++.+||+++||++.......+..+....++..+.+ ...++|.++..... ...+.|++||+|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 5999999999999999999999998776655555566677665542 36788887655432 2356799999999999
Q ss_pred hHHHHHHHHHHHHHhCCeeecCC
Q 025083 200 VYKSAEVVNLVTQELGGKITRQP 222 (258)
Q Consensus 200 ~~~~~~~l~~~~~~~G~~i~~~p 222 (258)
+++..++| +++|+++...+
T Consensus 79 ~d~~~~~l----~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARL----EAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHH----HHTTECEEECE
T ss_pred HHHHHHHH----HHCCCEEcccC
Confidence 99999999 89999987653
No 89
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.49 E-value=4.4e-13 Score=112.68 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=78.4
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 198 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 198 (258)
.++.|++|.|+|+++|++||+++|||++..+.. . ...++..+. .++.+.+.... ..+..|++|.|+
T Consensus 2 ~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~--~~~~~~l~~~~-------~~~~~~~~f~V~ 67 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDS--RAHRIAVHPGE-------SDDLAYAGWEVA 67 (286)
T ss_pred ceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCC--CceEEEEEECC-------cCCeeeEeeeeC
Confidence 468999999999999999999999998765321 1 123444432 13444443211 236789999999
Q ss_pred ChHHHHHHHHHHHHHhCCeeecCCcc--CCCCCeeEEEEECCCCCEEEEEcch
Q 025083 199 DVYKSAEVVNLVTQELGGKITRQPGP--IPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 199 d~~~~~~~l~~~~~~~G~~i~~~p~~--~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
|. +.++++.++|+++|+++...|.. ...+.++.++|+|||||.|||+...
T Consensus 68 ~~-~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 68 DE-AGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred CH-HHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 93 23334444448999998765532 1122357899999999999998643
No 90
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.43 E-value=2e-12 Score=94.60 Aligned_cols=77 Identities=25% Similarity=0.381 Sum_probs=51.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc---ccCCCCeeeEEEE
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS---YDIGTGFGHLAIA 99 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~hia~~ 99 (258)
+++||+|.|+|++++++||+++|||++......+...+..+|+..++ ...+++........ .....|+.|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999765433333334556666532 23566654322111 1223578999999
Q ss_pred cCC
Q 025083 100 TED 102 (258)
Q Consensus 100 v~d 102 (258)
|+|
T Consensus 78 v~~ 80 (125)
T cd07241 78 VGS 80 (125)
T ss_pred CCC
Confidence 975
No 91
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.42 E-value=2.9e-12 Score=96.32 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=63.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCC-----------CCeEEEEeccCCCCceeEEEEEeecCCC----
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----------EKYSNAFLGFGPEQSYFVVELTYNYGVT---- 85 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~---- 85 (258)
+++++||+|.|+|+++|++||++ |||++..+...++ .....+++.. ..+...++|.......
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~g~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRT--PDGHSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeC--CCCCceEEEEEecCCCCcCc
Confidence 47899999999999999999998 9999875532211 1233445542 2234567877643211
Q ss_pred ---cccCCCCeeeEEEEcCC--------------------------------CCCCcEEEEEEC
Q 025083 86 ---SYDIGTGFGHLAIATED--------------------------------DPDGYIFELIQR 114 (258)
Q Consensus 86 ---~~~~~~~~~hia~~v~d--------------------------------DP~G~~iel~~~ 114 (258)
....+.|+.||||.|+| ||||+.|||++.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 11224578999999998 999999999874
No 92
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.41 E-value=4e-12 Score=92.58 Aligned_cols=79 Identities=52% Similarity=0.990 Sum_probs=55.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCC-CcccCCCCeeeEEEEcCC
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV-TSYDIGTGFGHLAIATED 102 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~hia~~v~d 102 (258)
+.||+|.|+|++++++||+++||+++......+++.+..+++..+.......+++...... .+...+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999886654444455667777543113445666554332 222334578899999998
No 93
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.39 E-value=5.3e-12 Score=97.16 Aligned_cols=92 Identities=30% Similarity=0.347 Sum_probs=63.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeee----cc--------------CCCCeEEEEeccCCCCceeEEEEEeecC
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKR----DV--------------PEEKYSNAFLGFGPEQSYFVVELTYNYG 83 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 83 (258)
++++||+|.|+|+++|++||+++|||++..+. .. .......+++..++ ...|+|.....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 67999999999999999999999999875321 10 01124456665432 33477776543
Q ss_pred CCcc-----cCCCCeeeEEEEcCC------------------------------------CCCCcEEEEEECCC
Q 025083 84 VTSY-----DIGTGFGHLAIATED------------------------------------DPDGYIFELIQRGP 116 (258)
Q Consensus 84 ~~~~-----~~~~~~~hia~~v~d------------------------------------DP~G~~iel~~~~~ 116 (258)
.... ..+.|+.|+||.|+| ||||+.|||++...
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 2111 124688999999988 89999999988763
No 94
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.38 E-value=1.3e-11 Score=98.95 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=88.6
Q ss_pred CCCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc-cccCCceeeEEE
Q 025083 117 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAI 195 (258)
Q Consensus 117 ~~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~~ 195 (258)
.+..+..+.|.|+|++++..||+++||+++..+.. ..+.++.++ ...|.|.+.+.... .+...|..|++|
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC---EEEEEEEeCCCCCCCCccccceeeeee
Confidence 46678899999999999999999999999988753 224455443 35666766554432 345569999999
Q ss_pred EECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 196 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 196 ~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
.+++..++...| ..+...|+.+. ++.++. -...+||.||+||-||++...
T Consensus 78 LlP~r~~L~~~l-~hl~~~~~~l~-Ga~DH~--vSEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 78 LLPTREDLARVL-NHLAEEGIPLV-GASDHL--VSEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred ecCCHHHHHHHH-HHHHhcCCccc-ccCcch--hheeeeecCCCCCeEEEEecC
Confidence 999965555444 55678888886 444433 246899999999999999764
No 95
>PRK11478 putative lyase; Provisional
Probab=99.37 E-value=7.6e-12 Score=92.28 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=50.1
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCC-CCeEEEEeccCCCCceeEEEEEeecC-C--CcccCCCCeee
Q 025083 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-EKYSNAFLGFGPEQSYFVVELTYNYG-V--TSYDIGTGFGH 95 (258)
Q Consensus 20 ~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~-~--~~~~~~~~~~h 95 (258)
.+.+++||+|.|+|++++++||+++|||++..+...+. ..+... +..+ ....+++..... . .......|+.|
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~h 78 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LALN---GQYVIELFSFPFPPERPSRPEACGLRH 78 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-EecC---CCcEEEEEEecCCCCCCCCCCCCceeE
Confidence 36789999999999999999999999999864422111 122211 2221 123566654221 1 11122357889
Q ss_pred EEEEcCC
Q 025083 96 LAIATED 102 (258)
Q Consensus 96 ia~~v~d 102 (258)
+||.|+|
T Consensus 79 i~f~v~d 85 (129)
T PRK11478 79 LAFSVDD 85 (129)
T ss_pred EEEEeCC
Confidence 9999998
No 96
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.35 E-value=1.3e-11 Score=90.16 Aligned_cols=82 Identities=21% Similarity=0.346 Sum_probs=58.9
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEE
Q 025083 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (258)
Q Consensus 20 ~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~ 99 (258)
.+++++|++|.|+|+++|++||+++||+++..+.. ..+|+...+......+.+... ...++.|+||.
T Consensus 3 ~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~ 69 (121)
T cd09013 3 DIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWR 69 (121)
T ss_pred CccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEEE
Confidence 47899999999999999999999999999876532 134444322222334444321 13478899999
Q ss_pred cCC----------------------------------CCCCcEEEEEEC
Q 025083 100 TED----------------------------------DPDGYIFELIQR 114 (258)
Q Consensus 100 v~d----------------------------------DP~G~~iel~~~ 114 (258)
|++ ||+|+.||++..
T Consensus 70 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 70 ASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEe
Confidence 976 999999999864
No 97
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.35 E-value=1.6e-11 Score=92.57 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=49.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCC-eEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEE
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEK-YSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~ 99 (258)
+++++||+|.|+|++++++||+++|||++..+...+++. ...+|+..+. ....+.+... .+.++.|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~--~~h~~~~~~~-------~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN--KPHDIAFVGG-------PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC--CcceEEEecC-------CCCCceEEEEE
Confidence 678999999999999999999999999987654322222 2344554332 2223333211 13478899999
Q ss_pred cCC
Q 025083 100 TED 102 (258)
Q Consensus 100 v~d 102 (258)
|+|
T Consensus 75 v~d 77 (143)
T cd07243 75 LES 77 (143)
T ss_pred cCC
Confidence 987
No 98
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.33 E-value=3.3e-11 Score=88.29 Aligned_cols=86 Identities=29% Similarity=0.464 Sum_probs=61.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCC-cccCCCCeeeEEEEc
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT-SYDIGTGFGHLAIAT 100 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~hia~~v 100 (258)
|+++||.|.|+|++++++||+++|||++.... + ..+++..++ ....+.+....... ......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~---~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D---STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C---CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 68999999999999999999999999997652 1 234455332 23455554432221 122345788999999
Q ss_pred CC---------------------------------CCCCcEEEEEECC
Q 025083 101 ED---------------------------------DPDGYIFELIQRG 115 (258)
Q Consensus 101 ~d---------------------------------DP~G~~iel~~~~ 115 (258)
++ ||+|+.||++...
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEec
Confidence 86 9999999998764
No 99
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.32 E-value=2.8e-11 Score=90.12 Aligned_cols=71 Identities=24% Similarity=0.297 Sum_probs=49.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcC
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~ 101 (258)
.+++||+|.|+|+++|++||+++||+++..+.. . ..+|+..++......+.+..... ...++.|+||.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 579999999999999999999999999875532 1 23455543222334455543211 1358899999998
Q ss_pred C
Q 025083 102 D 102 (258)
Q Consensus 102 d 102 (258)
|
T Consensus 72 d 72 (134)
T cd08360 72 D 72 (134)
T ss_pred C
Confidence 8
No 100
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.31 E-value=3.5e-11 Score=92.53 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=46.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcC
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~ 101 (258)
++++||+|.|+|+++|++||+++|||++......+.+.....++..++ ....+.+.. ..+.++.|+||.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEcC
Confidence 789999999999999999999999999865433222322334444322 122333321 12346788888887
Q ss_pred C
Q 025083 102 D 102 (258)
Q Consensus 102 d 102 (258)
+
T Consensus 73 ~ 73 (161)
T cd07256 73 E 73 (161)
T ss_pred C
Confidence 5
No 101
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.31 E-value=3e-11 Score=90.55 Aligned_cols=72 Identities=21% Similarity=0.462 Sum_probs=47.8
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEE
Q 025083 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (258)
Q Consensus 20 ~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~ 99 (258)
|+.+++||.|.|+|++++++||+++|||++..+.. ..+++..++ ..+.+...........+.++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g----~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG----LWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC----eEEEeeccCCCCCccCCCCeeEEEEE
Confidence 67889999999999999999999999999875421 234444321 23444322111111223467899999
Q ss_pred cC
Q 025083 100 TE 101 (258)
Q Consensus 100 v~ 101 (258)
++
T Consensus 71 v~ 72 (139)
T PRK04101 71 IE 72 (139)
T ss_pred ec
Confidence 87
No 102
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.30 E-value=2.8e-11 Score=88.47 Aligned_cols=70 Identities=24% Similarity=0.293 Sum_probs=45.9
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEc
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v 100 (258)
+++++||.|.|+|+++|++||+++|||++..... .+ .+|+..........+.+.. ....++.|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 6899999999999999999999999999875431 11 2333321111223333321 1134678899988
Q ss_pred CC
Q 025083 101 ED 102 (258)
Q Consensus 101 ~d 102 (258)
++
T Consensus 70 ~~ 71 (122)
T cd07265 70 LD 71 (122)
T ss_pred CC
Confidence 74
No 103
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.29 E-value=1.6e-11 Score=93.65 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=48.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccC-CCCeEEEEeccCCCCc---eeEEEEEeecCCCcccCCCCeeeEEE
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVP-EEKYSNAFLGFGPEQS---YFVVELTYNYGVTSYDIGTGFGHLAI 98 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~hia~ 98 (258)
+++||+|.|+|+++|++||+++||+++......+ .+....+|+..++... ...+.+.. ..+.++.||||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987554332 2223566666532110 00111110 11468899999
Q ss_pred EcCC
Q 025083 99 ATED 102 (258)
Q Consensus 99 ~v~d 102 (258)
.|+|
T Consensus 74 ~v~d 77 (153)
T cd07257 74 EVHD 77 (153)
T ss_pred EcCC
Confidence 9987
No 104
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.27 E-value=8e-11 Score=90.08 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=60.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc-ccCCCCeeeEEEEcC
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-YDIGTGFGHLAIATE 101 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~hia~~v~ 101 (258)
+++||+|.|+|+++|++||+++|||++..+.. + ...+...+. ..+..|.+........ .....++.|+||.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 47999999999999999999999999876532 1 233333221 2234566655322111 122347889999998
Q ss_pred C---------------------------------CCCCcEEEEEECC
Q 025083 102 D---------------------------------DPDGYIFELIQRG 115 (258)
Q Consensus 102 d---------------------------------DP~G~~iel~~~~ 115 (258)
| ||+|+.||++...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 7 9999999999764
No 105
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.27 E-value=8.8e-11 Score=87.65 Aligned_cols=87 Identities=16% Similarity=0.237 Sum_probs=61.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc------ccCCCCeeeEE
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS------YDIGTGFGHLA 97 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~hia 97 (258)
++|++|.|+|++++++||+++|||++..+...+ .....++.. +...+.+..+..... ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999987654322 123344432 223455543322111 12346788999
Q ss_pred EEcCC--------------------------------CCCCcEEEEEECCC
Q 025083 98 IATED--------------------------------DPDGYIFELIQRGP 116 (258)
Q Consensus 98 ~~v~d--------------------------------DP~G~~iel~~~~~ 116 (258)
|.|+| ||+|+.|+++++.+
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 99998 99999999999764
No 106
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.26 E-value=4.4e-11 Score=87.88 Aligned_cols=76 Identities=32% Similarity=0.476 Sum_probs=51.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc------ccCCCCeeeE
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS------YDIGTGFGHL 96 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~hi 96 (258)
+++|+.|.|+|++++++||+++|||++......++.....+++..++ ..++|..+..... ...+.++.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 58999999999999999999999999865432233334556665432 3466654322111 0124577899
Q ss_pred EEEcCC
Q 025083 97 AIATED 102 (258)
Q Consensus 97 a~~v~d 102 (258)
||.|+|
T Consensus 77 ~~~v~d 82 (128)
T TIGR03081 77 AIEVDD 82 (128)
T ss_pred EEEcCC
Confidence 999998
No 107
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.26 E-value=7.9e-11 Score=86.11 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=49.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCC-CeEEEEeccCCCCceeEEEEEeecCCCc--ccCCCCeeeEEEE
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE-KYSNAFLGFGPEQSYFVVELTYNYGVTS--YDIGTGFGHLAIA 99 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~hia~~ 99 (258)
+++||+|.|+|++++++||+++|||++..+....+. .....++..........++|........ .....++.|+||.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998766543221 1122333221112233566654322211 1123467899999
Q ss_pred cCC
Q 025083 100 TED 102 (258)
Q Consensus 100 v~d 102 (258)
|++
T Consensus 81 v~~ 83 (126)
T cd08346 81 VPS 83 (126)
T ss_pred cCC
Confidence 985
No 108
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.25 E-value=7.6e-11 Score=93.08 Aligned_cols=99 Identities=19% Similarity=0.323 Sum_probs=72.6
Q ss_pred CCceeeeEEec--ChhhHHHHHHHhcCCeEeeeecCCc--cceeEEEeeecCCCceeEEEEEEecCC-c--------ccc
Q 025083 119 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPE--LKCALAMLGYAEEDQTTVLELAYSYGV-T--------EYT 185 (258)
Q Consensus 119 ~~i~hv~l~v~--d~~~s~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~-~--------~~~ 185 (258)
.+++|+++.|+ |++++.+||+++|||+.......++ .+.....+..+. ....+.|...... . ...
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHh
Confidence 46899999999 9999999999999999877654332 233444454332 2556666643321 1 012
Q ss_pred cCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCc
Q 025083 186 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 223 (258)
Q Consensus 186 ~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~ 223 (258)
.|.|++||||.|+|+++.++++ +++|+++...|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L----~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAAL----RARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHH----HHcCCeeccCch
Confidence 4679999999999999999999 899999987763
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.24 E-value=1.2e-10 Score=84.90 Aligned_cols=77 Identities=26% Similarity=0.378 Sum_probs=49.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCC-CCeEEEEeccCCCCceeEEEEEeecCC--C-cccCCCCeeeEE
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-EKYSNAFLGFGPEQSYFVVELTYNYGV--T-SYDIGTGFGHLA 97 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-~~~~~~~~~hia 97 (258)
.+++||+|.|+|++++++||+++|||++......++ ..+.. .+... ....+++...... . ....+.++.|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~---~~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLN---GGYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecC---CCcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 579999999999999999999999999875532222 22322 22211 1234555432221 1 111245788999
Q ss_pred EEcCC
Q 025083 98 IATED 102 (258)
Q Consensus 98 ~~v~d 102 (258)
|.|+|
T Consensus 78 ~~v~d 82 (125)
T cd08352 78 FSVED 82 (125)
T ss_pred EEeCC
Confidence 99998
No 110
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.24 E-value=1.7e-10 Score=79.99 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=76.0
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc--cccCC--ceee--
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGN--AYAQ-- 192 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~--g~~h-- 192 (258)
..+.|+++.|+|++++++||.++||++..++.+.- ...-|++ ...+.-+......+. ...+. -..|
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~w---vdfDfyG-----HQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfG 74 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTDTW---VDFDFYG-----HQVVAHLTPQPDSQGSGKVDGHGVPPPHFG 74 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccceE---EEeeecc-----cEEEEEecCCcccccCcccCCCCCCCccce
Confidence 34789999999999999999999999876654210 0111111 112222211111100 01111 1223
Q ss_pred EEEEECChHHHHHHHHHHHHHhCCeeecCCccC---CCCCeeEEEEECCCCCEEEEEcchhhh
Q 025083 193 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPI---PGLNTKITSFVDPDGWKTVLVDNEDFL 252 (258)
Q Consensus 193 i~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~---~~~~~~~~~~~DPdG~~iel~~~~~~~ 252 (258)
+.+.++|.-++.++| +++|+....+|... ..+..+.+|+.||.||.+|+-.-.++.
T Consensus 75 vVl~~edW~alaerl----ea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~e 133 (138)
T COG3565 75 VVLPVEDWFALAERL----EAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQE 133 (138)
T ss_pred EEEEHHHHHHHHHHH----HHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccchh
Confidence 557778888888888 89999998887542 122357899999999999997655443
No 111
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.23 E-value=2e-10 Score=85.29 Aligned_cols=89 Identities=24% Similarity=0.428 Sum_probs=61.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d 102 (258)
+++||.|.|+|++++++||+++|||++....+. . ..+|+..+ ......+.+.............++.|++|.|++
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRD-PDEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEec-CCCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765321 1 23455432 122334555443222111234578899999987
Q ss_pred ---------------------------------CCCCcEEEEEECCC
Q 025083 103 ---------------------------------DPDGYIFELIQRGP 116 (258)
Q Consensus 103 ---------------------------------DP~G~~iel~~~~~ 116 (258)
||+|+.||++...+
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcCC
Confidence 99999999997653
No 112
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.23 E-value=1.9e-10 Score=88.91 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=50.3
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEE
Q 025083 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (258)
Q Consensus 20 ~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~ 99 (258)
.+.+++|++|.|+|++++++||+++|||++......+.+.....|+.... ....+.+.... . ....++.|+||.
T Consensus 3 ~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~--~--~~~~~~~hiaf~ 76 (166)
T cd09014 3 GVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRDP--A--GARGRLHHLAYA 76 (166)
T ss_pred CcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecCC--C--CCCCCceEEEEE
Confidence 36899999999999999999999999999876543332222345555322 22233332211 1 112367899999
Q ss_pred cCC
Q 025083 100 TED 102 (258)
Q Consensus 100 v~d 102 (258)
|+|
T Consensus 77 v~~ 79 (166)
T cd09014 77 LDT 79 (166)
T ss_pred CCC
Confidence 986
No 113
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.22 E-value=1.2e-10 Score=88.87 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=49.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccC---CCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEE
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVP---EEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLA 97 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia 97 (258)
.++++||+|.|+|++++++||+++|||++......+ ++....+|+..++ ....+.+... ..+.++.|+|
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hia 78 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHLM 78 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEEE
Confidence 578999999999999999999999999986543221 1123456665432 2223333221 1135789999
Q ss_pred EEcCC
Q 025083 98 IATED 102 (258)
Q Consensus 98 ~~v~d 102 (258)
|.|+|
T Consensus 79 f~V~d 83 (154)
T cd07237 79 LEVTS 83 (154)
T ss_pred EEcCC
Confidence 99976
No 114
>PRK06724 hypothetical protein; Provisional
Probab=99.21 E-value=1.8e-10 Score=85.03 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=28.2
Q ss_pred ccccceeeEEEEEeCCHHHHHHHHHHhc---CCEEe
Q 025083 18 KKDKRRFLHAVYRVGDLDRTIKYYTECF---GMELL 50 (258)
Q Consensus 18 ~~~~~~~~hv~l~v~dl~~s~~FY~~~l---G~~~~ 50 (258)
..|+.+++||+|.|+|+++|++||+++| |++..
T Consensus 2 ~~~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 2 NTLRAGIHHIEFWVANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred CccCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEe
Confidence 4577889999999999999999999966 66653
No 115
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.20 E-value=2.5e-10 Score=83.22 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=30.3
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 20 ~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
+++++.|+.|.|+|++++++||+++|||++...
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 468999999999999999999999999998754
No 116
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.18 E-value=2.5e-10 Score=83.48 Aligned_cols=32 Identities=34% Similarity=0.713 Sum_probs=29.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeeec
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRD 54 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~ 54 (258)
|++||+|.|+|++++++||+++|||++.....
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeec
Confidence 68999999999999999999999999987765
No 117
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.18 E-value=2.9e-10 Score=82.11 Aligned_cols=79 Identities=28% Similarity=0.505 Sum_probs=57.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcC
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~ 101 (258)
|+++|+.|.|+|++++++||+++|||++..... ..+++..+. ...+.+.+... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 689999999999999999999999999886532 124444331 23334444322 1246789999998
Q ss_pred C-----------------------------------CCCCcEEEEEEC
Q 025083 102 D-----------------------------------DPDGYIFELIQR 114 (258)
Q Consensus 102 d-----------------------------------DP~G~~iel~~~ 114 (258)
+ ||+|+.+|++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 5 999999999865
No 118
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.18 E-value=3.6e-10 Score=83.78 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=30.2
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 20 ~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
|+.+++||+|.|+|+++|++||+++||+++..+
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEe
Confidence 577899999999999999999999999987655
No 119
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=3.7e-11 Score=88.23 Aligned_cols=94 Identities=37% Similarity=0.562 Sum_probs=67.1
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCC---------------CceeEEEEEeecCCC
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPE---------------QSYFVVELTYNYGVT 85 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~ 85 (258)
...++|.+++|.|+.+|+.||++++|+.+..........+..+|++.... .....+||+++++..
T Consensus 20 t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gte 99 (170)
T KOG2944|consen 20 TYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTE 99 (170)
T ss_pred hhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCC
Confidence 45679999999999999999999999998765433332333344433100 123368888887753
Q ss_pred cc---------cCCCCeeeEEEEcCC-------------------------------CCCCcEEEEEEC
Q 025083 86 SY---------DIGTGFGHLAIATED-------------------------------DPDGYIFELIQR 114 (258)
Q Consensus 86 ~~---------~~~~~~~hia~~v~d-------------------------------DP~G~~iel~~~ 114 (258)
.. ..++|++||||.|+| ||||+.||+...
T Consensus 100 s~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 100 SPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 21 233699999999999 999999999864
No 120
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.18 E-value=2.9e-10 Score=82.02 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=53.6
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEc
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v 100 (258)
+++++||.|.|+|+++|++||++ |||++..+. ++ .+|+..++ .....+.+.. ....++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~---~~---~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAART---DD---ELYYRGYG-TDPFVYVARK-------GEKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEec---CC---eEEEecCC-CccEEEEccc-------CCcCcccEEEEEE
Confidence 47899999999999999999999 999986542 11 23443221 1222221111 0124677888888
Q ss_pred CC-------------------------------CCCCcEEEEEEC
Q 025083 101 ED-------------------------------DPDGYIFELIQR 114 (258)
Q Consensus 101 ~d-------------------------------DP~G~~iel~~~ 114 (258)
+| ||+|+.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEec
Confidence 87 999999999865
No 121
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.17 E-value=1.9e-10 Score=85.29 Aligned_cols=69 Identities=25% Similarity=0.469 Sum_probs=44.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d 102 (258)
|+||+|.|+|++++++||+++|||++....+ ..+++..++ ..+.+.............++.|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~hiaf~v~~ 69 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGG----TWLALNEEPDIPRNEIRQSYTHIAFTIED 69 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCc----eEEEEEccCCCCcCCcCccceEEEEEecH
Confidence 6899999999999999999999999865321 122334322 23444332221111123467899999874
No 122
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.17 E-value=2.9e-10 Score=83.43 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=30.1
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 20 ~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
++.++.||.|.|+|+++|++||+++|||++..+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAER 35 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccC
Confidence 478999999999999999999999999998644
No 123
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.17 E-value=3e-10 Score=85.30 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=45.7
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC
Q 025083 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (258)
Q Consensus 25 ~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d 102 (258)
.||.|.|+|++++++||+++|||++..+.. . ..+|+...+......+.+.. ....++.|+||.|++
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~---~--~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~ 66 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE---D--RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTD 66 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC---C--EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCC
Confidence 499999999999999999999999876532 1 35666643322223332211 123589999999987
No 124
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.15 E-value=7e-11 Score=96.08 Aligned_cols=194 Identities=21% Similarity=0.391 Sum_probs=119.9
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc-------ccCCCCe
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-------YDIGTGF 93 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-------~~~~~~~ 93 (258)
..+++||.+.|.|...+..||+..|||+.......+.+....+-.... ++.+...+..+..+.. .+.|.|+
T Consensus 15 ~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr--~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 15 FLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALR--QGKIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred eeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhh--cCCEEEEEecCCCCCchhhhhhhhhcccch
Confidence 468999999999999999999999999987533222211111111111 1222333333322211 2346778
Q ss_pred eeEEEEcCC-----------------------CCCCcE-EEEE-----------ECC-------------C---------
Q 025083 94 GHLAIATED-----------------------DPDGYI-FELI-----------QRG-------------P--------- 116 (258)
Q Consensus 94 ~hia~~v~d-----------------------DP~G~~-iel~-----------~~~-------------~--------- 116 (258)
..+||.|+| |-+|.. +..+ ++. +
T Consensus 93 kdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l~ 172 (381)
T KOG0638|consen 93 KDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKLP 172 (381)
T ss_pred hceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCCC
Confidence 899999998 555642 2222 111 0
Q ss_pred --CCCCceeeeEEec--ChhhHHHHHHHhcCCeEeeeecCCcc-----ceeEEEeeecCCCceeEEEEEEecCCc-----
Q 025083 117 --TPEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPEL-----KCALAMLGYAEEDQTTVLELAYSYGVT----- 182 (258)
Q Consensus 117 --~~~~i~hv~l~v~--d~~~s~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~l~~~~~~~----- 182 (258)
...+++|++..++ .++.+.+||.+.|||......+++.- ..+.+.+. +. ..++.+.-+....
T Consensus 173 ~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~--~esi~mpinEp~~G~k~k 248 (381)
T KOG0638|consen 173 KGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NY--EESIKMPINEPAPGKKKK 248 (381)
T ss_pred ccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cC--CccEEEeccCCCCCCccH
Confidence 1247889999999 68999999999999987766553321 01111122 11 1222222221110
Q ss_pred -------ccccCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCcc
Q 025083 183 -------EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGP 224 (258)
Q Consensus 183 -------~~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~ 224 (258)
.+..|.|++||++.++||-.+.+.+ ++.|+++..+|..
T Consensus 249 sQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~l----r~rG~eFLs~Ps~ 293 (381)
T KOG0638|consen 249 SQIQEYVEYHGGAGVQHIALNTEDIIEAIRGL----RARGGEFLSPPST 293 (381)
T ss_pred HHHHHHHHhcCCCceeeeeecchHHHHHHHHH----HhcCCccccCCHH
Confidence 1456779999999999999999999 7889999887743
No 125
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.15 E-value=6.7e-10 Score=81.70 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=48.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhc---CCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc---ccCCCCeeeE
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECF---GMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS---YDIGTGFGHL 96 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~hi 96 (258)
+++||.|.|+|++++.+||+++| ||++..... ++ ..|... .....+.+........ ...+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG---DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec---CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 57999999999999999999999 999876532 11 122221 1234566654432211 1234578899
Q ss_pred EEEcCC
Q 025083 97 AIATED 102 (258)
Q Consensus 97 a~~v~d 102 (258)
||.|++
T Consensus 73 a~~v~~ 78 (128)
T cd07242 73 AFRAPS 78 (128)
T ss_pred EEEcCC
Confidence 999975
No 126
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.13 E-value=2.1e-09 Score=79.30 Aligned_cols=114 Identities=14% Similarity=0.061 Sum_probs=70.1
Q ss_pred eEEe-cChhhHHHHHHHhcCCeEeeeecCC----------ccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeE
Q 025083 125 MLRV-GDLGRSIKFYEKALGMKLLRTIDSP----------ELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQV 193 (258)
Q Consensus 125 ~l~v-~d~~~s~~FY~~~lG~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi 193 (258)
-|.+ .|.+++++||+++||+++......+ .+.+..+.+..++ ..+.+......... .+..-.++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g----~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGG----QRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECC----EEEEEEcCCCCCCC-CCCCCEEE
Confidence 4566 8999999999999999988765321 1222233344332 23433322211111 12234469
Q ss_pred EEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEE
Q 025083 194 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 246 (258)
Q Consensus 194 ~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 246 (258)
++.|+|++++ +++.+++.+ |.++..+|...++ +.+.++|+||+|+.|+|.
T Consensus 79 ~i~~~~~e~v-~~~~~~l~~-~g~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEEA-DRLFEALSE-GGTVLMPLQKTFW-SPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHHH-HHHHHHHhc-CCeEeccchhcCc-ccccEEEECCCCCEEEeC
Confidence 9999985433 333334455 5588888776654 468899999999999873
No 127
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.13 E-value=7.4e-10 Score=81.07 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=29.6
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEee
Q 025083 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLR 51 (258)
Q Consensus 20 ~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~ 51 (258)
|.++++|+.|.|+|+++|++||+++|||++..
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~ 32 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAK 32 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeee
Confidence 45789999999999999999999999999875
No 128
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.13 E-value=5.8e-10 Score=81.31 Aligned_cols=67 Identities=10% Similarity=0.185 Sum_probs=44.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcC
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~ 101 (258)
.++.||+|.|+|+++|++||+++|||++..+.. . ..+++..++ .++.+.+... ...++.|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---D--GALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC---C--CeEEEEccC--CceEEEEEeC-------CCCceeEEEEEEC
Confidence 368999999999999999999999999865421 1 123444322 2344444321 1235678888876
Q ss_pred C
Q 025083 102 D 102 (258)
Q Consensus 102 d 102 (258)
+
T Consensus 67 ~ 67 (120)
T cd07252 67 D 67 (120)
T ss_pred C
Confidence 5
No 129
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.12 E-value=6.4e-10 Score=81.54 Aligned_cols=75 Identities=31% Similarity=0.511 Sum_probs=52.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccC-CCCeEEEEeccCCCCceeEEEEEeecCCC-c-----ccCCCCeeeE
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVP-EEKYSNAFLGFGPEQSYFVVELTYNYGVT-S-----YDIGTGFGHL 96 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~-----~~~~~~~~hi 96 (258)
++||+|.|+|++++++||+++|||+........ ++....+++..+ ...+++..+.... . ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999987654322 233445666542 3456666543321 1 1235788999
Q ss_pred EEEcCC
Q 025083 97 AIATED 102 (258)
Q Consensus 97 a~~v~d 102 (258)
+|.|+|
T Consensus 77 ~f~v~d 82 (128)
T cd07249 77 AFEVDD 82 (128)
T ss_pred EEEeCC
Confidence 999998
No 130
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.10 E-value=1.5e-09 Score=76.64 Aligned_cols=117 Identities=24% Similarity=0.223 Sum_probs=70.8
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecC-------CcccccCCceee
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYG-------VTEYTKGNAYAQ 192 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-------~~~~~~~~g~~h 192 (258)
....|.|+|+|+++|.+||+ .|||+......+.. ...++- +. ...+.|..... +..-.....-.-
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~-alGfk~Npq~sde~---a~~mi~-~~---ni~vMLL~~~~fq~F~~~~i~dt~~s~evl 74 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYT-ALGFKFNPQFSDED---AACMII-SD---NIFVMLLEEARFQTFTKRQIADTTKSREVL 74 (133)
T ss_pred eEEEEecchhhHHHHHHHHH-HhCcccCCCccccc---ceeEEE-ec---cEEEEEeccHHhhhhcccccccccCCceEE
Confidence 45689999999999999997 49999877654432 111111 11 22222322111 011122234556
Q ss_pred EEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 193 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 193 i~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
|++.+.+- +.++.+-++..++|++...+|..+ +.....-|.|||||.||++-
T Consensus 75 i~ls~~s~-eevd~~v~ka~eaGGk~~~~~~d~--gfMYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 75 ISLSAGSR-EEVDELVDKALEAGGKPANEPQDE--GFMYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred EEeccCcH-HHHHHHHHHHHHcCCCCCCCcccc--ccccceeeeCCCCCeEEEEE
Confidence 99999872 333333344489999987665543 22344559999999999974
No 131
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.10 E-value=1.1e-09 Score=79.87 Aligned_cols=74 Identities=30% Similarity=0.428 Sum_probs=47.4
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCC---CcccCCCCeeeEE
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV---TSYDIGTGFGHLA 97 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~hia 97 (258)
+++++|+.|.|+|++++++||+++|||++...... ..+ +.+..++ ..+++...... .....+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~--~~~--~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE--VGR--KALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeeccccc--CCc--eEEEeCC----EEEEEecCCCccCcCccCCCCCCceEE
Confidence 46899999999999999999999999998765321 112 2233222 23444432211 1112345778999
Q ss_pred EEcCC
Q 025083 98 IATED 102 (258)
Q Consensus 98 ~~v~d 102 (258)
|.+++
T Consensus 73 ~~~~~ 77 (125)
T cd07253 73 LITEP 77 (125)
T ss_pred EEecc
Confidence 99864
No 132
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.10 E-value=1.4e-09 Score=80.60 Aligned_cols=69 Identities=26% Similarity=0.333 Sum_probs=47.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC
Q 025083 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (258)
Q Consensus 25 ~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d 102 (258)
+||.|.|+|++++++||+++||+++......+ +....+|+..++ ....+.+.... ...++.|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCC
Confidence 59999999999999999999999987654432 223456666432 22344443211 13578899999886
No 133
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.10 E-value=6.8e-09 Score=76.34 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=79.4
Q ss_pred eEEec-ChhhHHHHHHHhcCCeEeeeecCCc----------cceeEEEeeecCCCceeEEEEEEecCCcccccCCc-eee
Q 025083 125 MLRVG-DLGRSIKFYEKALGMKLLRTIDSPE----------LKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNA-YAQ 192 (258)
Q Consensus 125 ~l~v~-d~~~s~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g-~~h 192 (258)
-|..+ |.+++++||+++||.++..+....+ +....+-+..+ ...|.+...........+++ -.-
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 46677 9999999999999999988776554 23333444443 22333332222111222222 234
Q ss_pred EEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 193 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 193 i~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
|.+.++|+++.++++ .+.|+++..++....+ +.++..++||.|+.|-|.+..
T Consensus 81 l~~~~~d~da~f~~a----~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 81 LDLYVEDVDAVFERA----AAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEehHHHHHHHHH----HhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCc
Confidence 777778888888888 8999999988877665 568999999999999997654
No 134
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.09 E-value=7.1e-09 Score=86.12 Aligned_cols=189 Identities=16% Similarity=0.200 Sum_probs=120.5
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCC--Cc--ccCCCCeeeE
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV--TS--YDIGTGFGHL 96 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~--~~~~~~~~hi 96 (258)
.+++.+|.+.|+|.+.+..=|-..||++...+.... . ..+|.. +.+.+.+...... .. ...|++...+
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk--~-v~l~rQ-----Gdinlvvn~~~~s~a~~f~~~Hgps~~a~ 91 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK--A-VTLYRQ-----GDINLVVNAEPDSFAAEFLDKHGPSACAM 91 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHHHHhCcccccccccc--c-eeEEEe-----CCEEEEEcCCCcchhhHHHHhcCCchhee
Confidence 789999999999996666666678999887553211 1 233322 2234444322221 01 1356788889
Q ss_pred EEEcCC-------------------------------CCCCcEEEEEECCC---------------------CCCCceee
Q 025083 97 AIATED-------------------------------DPDGYIFELIQRGP---------------------TPEPLCQV 124 (258)
Q Consensus 97 a~~v~d-------------------------------DP~G~~iel~~~~~---------------------~~~~i~hv 124 (258)
+|+|+| -++|..+-++...+ ....|+|+
T Consensus 92 a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDHl 171 (363)
T COG3185 92 AFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDHL 171 (363)
T ss_pred EEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeechh
Confidence 999999 44444444443320 12488999
Q ss_pred eEEec--ChhhHHHHHHHhcCCeEeeeecCCc--cceeEEEeeecCCCceeEEEEEEecCCcc-------cccCCceeeE
Q 025083 125 MLRVG--DLGRSIKFYEKALGMKLLRTIDSPE--LKCALAMLGYAEEDQTTVLELAYSYGVTE-------YTKGNAYAQV 193 (258)
Q Consensus 125 ~l~v~--d~~~s~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-------~~~~~g~~hi 193 (258)
++.|+ .++....||+++|||+.....+.++ +....--+..+. ....|-|....+... ...|.|++||
T Consensus 172 ~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~--G~vrlplN~s~~~~sqi~efl~~y~G~GIQHI 249 (363)
T COG3185 172 THNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPC--GKVRLPLNESADDKSQIGEFLREYRGEGIQHI 249 (363)
T ss_pred hhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCC--CcEEeecccCCCchhHHHHHHHHhCCCcceEE
Confidence 98886 8999999999999999887654432 222221122122 133343433222211 2356799999
Q ss_pred EEEECChHHHHHHHHHHHHHhCCeeecCCc
Q 025083 194 AISTDDVYKSAEVVNLVTQELGGKITRQPG 223 (258)
Q Consensus 194 ~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~ 223 (258)
+|.++||-+.++++ ++.|+++...|.
T Consensus 250 A~~T~dI~~tv~~l----r~rG~~fl~ip~ 275 (363)
T COG3185 250 AFGTDDIYATVAAL----RERGVKFLPIPE 275 (363)
T ss_pred EecccHHHHHHHHH----HHcCCccCCCch
Confidence 99999999999999 889999886653
No 135
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.09 E-value=9.4e-10 Score=79.37 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=47.4
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCC--cccCCCCeeeEEEEcCC
Q 025083 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT--SYDIGTGFGHLAIATED 102 (258)
Q Consensus 26 hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~hia~~v~d 102 (258)
||+|.|+|++++++||+++|||++..+....+ ....+++.... .....+.+....... ..+...+..|++|.|+|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 77 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPG-SPETSLVLAPPANPAAMSGLQPGGTPGLVLATDD 77 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCC-CCeeEEEEeCCCCccccccccCCCceEEEEEehH
Confidence 89999999999999999999999886643222 22333343221 113445554332221 11223567899999988
No 136
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.08 E-value=6.2e-10 Score=79.50 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=47.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc-ccCCCCeeeEEEEcCC
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-YDIGTGFGHLAIATED 102 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~hia~~v~d 102 (258)
++|++|.|+|++++++||+++|||++..+...+ ...+++..++. ..+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 589999999999999999999999987543222 12234443321 2455544322211 1223467899999998
No 137
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.07 E-value=1.6e-09 Score=81.72 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=46.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcC
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~ 101 (258)
.+++||.|.|+|++++++||+++|||++..... . ...|+..+.. ...+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCCC--cceEEEccC-------CCCceEEEEEECC
Confidence 479999999999999999999999999864421 1 2345554432 223444211 1246789999998
Q ss_pred C
Q 025083 102 D 102 (258)
Q Consensus 102 d 102 (258)
|
T Consensus 69 d 69 (144)
T cd07239 69 S 69 (144)
T ss_pred C
Confidence 7
No 138
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.07 E-value=1.8e-09 Score=78.45 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=28.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
.+++|+.|.|+|++++++||+++|||++...
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 5899999999999999999999999998754
No 139
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.05 E-value=2.3e-09 Score=78.25 Aligned_cols=80 Identities=28% Similarity=0.482 Sum_probs=54.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d 102 (258)
+++||.|.|+|++++++||+++|||++....+ + ..++..+. . .+.+...... ....+..|++|.+++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~--~--~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD--L--WLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC--E--EEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 47999999999999999999999999875432 1 12333321 2 2222211111 123467899998853
Q ss_pred -------------------------------CCCCcEEEEEECC
Q 025083 103 -------------------------------DPDGYIFELIQRG 115 (258)
Q Consensus 103 -------------------------------DP~G~~iel~~~~ 115 (258)
||||+.||++...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeCC
Confidence 9999999999764
No 140
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.04 E-value=1.2e-09 Score=80.04 Aligned_cols=120 Identities=24% Similarity=0.292 Sum_probs=70.6
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccc---eeEEEeeecCCCceeEEEEE-------Eec-CCcc--ccc
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK---CALAMLGYAEEDQTTVLELA-------YSY-GVTE--YTK 186 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~l~-------~~~-~~~~--~~~ 186 (258)
++.|+.|.|+|+++|++||+++||++........... ....+...... ........ ... .... ...
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGG-PGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCC-cccceeecccccccccccccceEEeecC
Confidence 6899999999999999999999999998765432211 11111111100 00000000 000 0000 111
Q ss_pred C-CceeeEEEEECC---hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 187 G-NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 187 ~-~g~~hi~~~v~d---~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
+ .+..|+++.+++ ....+... ...|..+...+. ... +..+||+||||+.||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFL----DPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEee----CCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 1 247899999998 44444444 567887765433 222 238999999999999974
No 141
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.03 E-value=1.4e-09 Score=77.98 Aligned_cols=96 Identities=23% Similarity=0.293 Sum_probs=63.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCCCC
Q 025083 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDDP 104 (258)
Q Consensus 25 ~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~dDP 104 (258)
+||++.|+|++++++||+++||++.......+....+..++..++ ....+||..+.....
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~--~~~~iELi~p~~~~~------------------ 60 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGD--GPVQIELIQPLDGDS------------------ 60 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETT--ETEEEEEEEESSTTC------------------
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCC--CcEEEEEEEeCCCCc------------------
Confidence 699999999999999999999998765544334444444444322 113455544322110
Q ss_pred CCcEEEEEECCCCCCCceeeeEEecChhhHHHHHHHhcCCeEeee
Q 025083 105 DGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRT 149 (258)
Q Consensus 105 ~G~~iel~~~~~~~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 149 (258)
.+. ....++.|+++.|.|++++.+-+.+ .|+++...
T Consensus 61 ------~~~--~~~~gi~Hia~~v~D~d~~~~~l~~-~G~~~~~~ 96 (109)
T PF13669_consen 61 ------PLD--RGGGGIHHIAFEVDDLDAAIARLEA-QGFRVLDE 96 (109)
T ss_dssp ------HHH--HTSSEEEEEEEEESHHHHHHHHHHH-TTECEEEC
T ss_pred ------ccc--cCCCCEEEEEEEeCCHHHHHHHHHH-CCCEEccc
Confidence 000 1346788999999999999999875 79887654
No 142
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.02 E-value=2.8e-09 Score=76.55 Aligned_cols=28 Identities=32% Similarity=0.649 Sum_probs=25.7
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeee
Q 025083 26 HAVYRVGDLDRTIKYYTECFGMELLRKR 53 (258)
Q Consensus 26 hv~l~v~dl~~s~~FY~~~lG~~~~~~~ 53 (258)
||.|.|+|++++++||+++||+++..+.
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~ 28 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSS 28 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeecc
Confidence 8999999999999999999999987653
No 143
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.02 E-value=3.5e-09 Score=76.21 Aligned_cols=71 Identities=17% Similarity=0.051 Sum_probs=43.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d 102 (258)
+.|++|.|+|++++++||+++||+++..... +... .+++..++ ...+.+....... .......|++|.|+|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~--~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~d 71 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGD--YAVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDD 71 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCc--eEEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCC
Confidence 4799999999999999999999999875532 1222 23333322 1122332221111 122355788998888
No 144
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.95 E-value=3.6e-08 Score=85.33 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=82.3
Q ss_pred CceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCc-c-----cccCCceeeE
Q 025083 120 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-E-----YTKGNAYAQV 193 (258)
Q Consensus 120 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~-----~~~~~g~~hi 193 (258)
++.|+.|.|+|++++.+||++.|||+........... ....++.+ ...+.|....... + ...+.|+.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~i 76 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKDV 76 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEEE
Confidence 6899999999999999999999999988762222222 22223322 3556665432221 1 1246789999
Q ss_pred EEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 194 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 194 ~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+|.|+|++++++++ .++|++++.+|.....+.-+..-++-+.|..+.|+++.
T Consensus 77 af~V~Dv~~a~~~l----~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~ 128 (353)
T TIGR01263 77 AFRVDDAAAAFEAA----VERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRG 128 (353)
T ss_pred EEEECCHHHHHHHH----HHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCC
Confidence 99999999999999 89999998877543111223344566777777777653
No 145
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.93 E-value=7.3e-09 Score=75.37 Aligned_cols=30 Identities=20% Similarity=0.595 Sum_probs=27.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEee
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLR 51 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~ 51 (258)
|++.|+.|.|+|+++|++||+++||+++..
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEee
Confidence 578999999999999999999999999864
No 146
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.93 E-value=1.3e-08 Score=74.30 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=43.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHh---cCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEc
Q 025083 24 FLHAVYRVGDLDRTIKYYTEC---FGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v 100 (258)
+.||.|.|+|+++|++||+++ ||++...+. .+. ...|.. .. ....+.+.......+. ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~~-~~~~~~-~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GPG-AVGYGK-GG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CCc-eeEecc-CC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999999 699886543 111 222322 21 2234444433211111 122457999999
Q ss_pred CC
Q 025083 101 ED 102 (258)
Q Consensus 101 ~d 102 (258)
++
T Consensus 73 ~~ 74 (123)
T cd07262 73 PS 74 (123)
T ss_pred CC
Confidence 86
No 147
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.91 E-value=1.9e-08 Score=73.04 Aligned_cols=28 Identities=32% Similarity=0.693 Sum_probs=25.8
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 25 LHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 25 ~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
-|+.|.|+|++++.+||+++||++....
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKV 30 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecc
Confidence 5999999999999999999999987654
No 148
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.91 E-value=1.8e-08 Score=73.21 Aligned_cols=70 Identities=27% Similarity=0.408 Sum_probs=43.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCC------cccCCCCeeeEE
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT------SYDIGTGFGHLA 97 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~~~~hia 97 (258)
+-||.|.|+|++++++||+++|||++..+. ++. .+++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~--~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DRR--LAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CCc--eEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 468999999999999999999999987641 222 244444332 223333221110 111234778999
Q ss_pred EEcC
Q 025083 98 IATE 101 (258)
Q Consensus 98 ~~v~ 101 (258)
|.++
T Consensus 73 ~~v~ 76 (122)
T cd08354 73 FAIP 76 (122)
T ss_pred EEcC
Confidence 9986
No 149
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=98.90 E-value=1.5e-08 Score=71.61 Aligned_cols=71 Identities=30% Similarity=0.381 Sum_probs=49.0
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC
Q 025083 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (258)
Q Consensus 26 hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d 102 (258)
|+.+.|+|++++.+||+++||++....... ......++..+ ...+.+...........+.+..|++|.|+|
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~ 71 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDD 71 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCC
Confidence 899999999999999999999998876432 11244555432 245666654332211234577899999998
No 150
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.88 E-value=2.1e-08 Score=73.18 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=26.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
+.|+.|.|+|++++.+||+++|||++...
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~ 29 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFL 29 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEee
Confidence 47999999999999999999999998654
No 151
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=98.86 E-value=3.4e-08 Score=78.00 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=55.5
Q ss_pred ceeeEEEEEeC--CHHHHHHHHHHhcCCEEeeeeccCC--CCeEEEEeccCCCCceeEEEEEeecCC--C-------ccc
Q 025083 22 RRFLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPE--EKYSNAFLGFGPEQSYFVVELTYNYGV--T-------SYD 88 (258)
Q Consensus 22 ~~~~hv~l~v~--dl~~s~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-------~~~ 88 (258)
.+++||++.|+ |++++++||+++|||+.......++ .......+.. ......++|..+... . ...
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~--~~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLAS--PDGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEEC--CCCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 57999999999 9999999999999999876654332 2233344443 234566777654431 1 112
Q ss_pred CCCCeeeEEEEcCC
Q 025083 89 IGTGFGHLAIATED 102 (258)
Q Consensus 89 ~~~~~~hia~~v~d 102 (258)
.|.|+.||||.|+|
T Consensus 80 ~G~Gv~HIAf~vdD 93 (191)
T cd07250 80 GGAGVQHIALATDD 93 (191)
T ss_pred CCCceeEEEEECCC
Confidence 46799999999998
No 152
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.85 E-value=8.2e-08 Score=69.91 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=43.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc----ccCCCCeeeEEEEcCC
Q 025083 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS----YDIGTGFGHLAIATED 102 (258)
Q Consensus 27 v~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~hia~~v~d 102 (258)
-.|.|+|++++++||+++||+++......+++....+.+..++ . .+.+........ .....+..+++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--G--GVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--E--EEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 4689999999999999999999987653333333333444331 2 233332221111 1123455789999988
No 153
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.84 E-value=7e-08 Score=70.01 Aligned_cols=83 Identities=24% Similarity=0.278 Sum_probs=54.5
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCC-C-cccCCCCeeeEEEEcCC--
Q 025083 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV-T-SYDIGTGFGHLAIATED-- 102 (258)
Q Consensus 27 v~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~-~~~~~~~~~hia~~v~d-- 102 (258)
+.|.|+|++++.+||+++||+++......+++....+.+..++ ..+.+...... . ....+.+..|++|.|+|
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 4589999999999999999999887654344443444444332 23444332111 0 11223456799999998
Q ss_pred ------------------------------CCCCcEEEEEE
Q 025083 103 ------------------------------DPDGYIFELIQ 113 (258)
Q Consensus 103 ------------------------------DP~G~~iel~~ 113 (258)
||+|+.|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 99999998875
No 154
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.82 E-value=3.1e-08 Score=72.27 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=25.6
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 25 LHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 25 ~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
-||+|.|+|+++|++||+++||+++...
T Consensus 1 ~Hi~l~v~Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 1 FHLAIPVRDLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCEEeec
Confidence 3999999999999999999999998654
No 155
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.80 E-value=5e-08 Score=70.65 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=25.1
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 25 LHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 25 ~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
-++.|.|+|+++|++||+++|||++...
T Consensus 3 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 3 LYPVIVTDDLAETADFYVRHFGFTVVFD 30 (119)
T ss_pred ceeEEEECCHHHHHHHHHHhhCcEEEec
Confidence 3678999999999999999999998754
No 156
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.79 E-value=6e-08 Score=69.64 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=26.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
+++.||.|.|+|+++|++||+ +|||++..+
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~ 30 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREE 30 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEee
Confidence 468999999999999999997 799998654
No 157
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=98.78 E-value=5.7e-08 Score=69.00 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=39.2
Q ss_pred EEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC
Q 025083 29 YRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (258)
Q Consensus 29 l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d 102 (258)
|.|+|++++++||+++|||++....+ .+ +.+..+.........+..... ......+..|++|.|+|
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~d 66 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DY--VDFSLGFRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVED 66 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SE--EEEEETEEEEEEEEEEEEEES--SSSSSSSEEEEEEEESH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----Ce--EEEEeccchhhhhHHHccCCc--cccCCCceeEEEEEEcC
Confidence 68999999999999999999987432 22 222222110011122222211 12234577899999987
No 158
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.75 E-value=1.1e-07 Score=79.67 Aligned_cols=109 Identities=21% Similarity=0.199 Sum_probs=68.8
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 198 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 198 (258)
.+..||.|.|+|+++|++||+++|++.. .. ++ . . +++ +. ...+.+....+ .....-.-+++.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs--de--~-a-~cm--~d---tI~vMllt~~D----~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD--GD--K-L-FLL--GK---TSLYLQQTKAE----KKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC--CC--c-c-ccc--cC---cEEEEEecCCC----CCCcceEEEEeccC
Confidence 4567999999999999999999988874 21 11 1 1 223 11 22222221111 11234455899999
Q ss_pred ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 199 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 199 d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
+ .+.++.+-++..++|++...+|..+.. .--|.|||||.||++-.
T Consensus 310 S-re~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 C-EHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred C-HHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEEE
Confidence 8 444555555558999977666555432 22589999999999843
No 159
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.74 E-value=1.2e-07 Score=68.12 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=40.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCC-cccCCCCeeeEEEEcCC
Q 025083 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT-SYDIGTGFGHLAIATED 102 (258)
Q Consensus 27 v~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~hia~~v~d 102 (258)
|.|.|+|+++|++||+++||+++.... ..+.. +..++ ...+.+....... ......+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~--~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 69 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFAL--FVLGS---GVKLGLWSRHTVEPASDATGGGSELAFMVDD 69 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEE--EEeCC---CcEEEEeeccccCCCCCCCCCceEEEEEcCC
Confidence 679999999999999999999976531 22322 22211 1234443322211 11123466899999985
No 160
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.73 E-value=1.2e-07 Score=69.41 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=24.0
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 25 LHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 25 ~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
++|.|.|+|+++|++||++ |||++...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~ 28 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQ 28 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccc
Confidence 6899999999999999976 99998643
No 161
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=98.70 E-value=2e-07 Score=66.51 Aligned_cols=66 Identities=27% Similarity=0.360 Sum_probs=41.0
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC
Q 025083 28 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (258)
Q Consensus 28 ~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d 102 (258)
.|.|+|++++++||+++|||++..... .. ..+++..+ ...+.+......... ...+..|++|.++|
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 68 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVED 68 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCC
Confidence 589999999999999999999876532 12 23444422 234445433221111 22345688898887
No 162
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=98.68 E-value=1.8e-07 Score=68.07 Aligned_cols=28 Identities=14% Similarity=0.444 Sum_probs=24.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
++||+|.|+|+++|++||+. |||++...
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~ 28 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEE 28 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCC
Confidence 57999999999999999975 99997643
No 163
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=98.66 E-value=2.7e-07 Score=66.11 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=49.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC---
Q 025083 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED--- 102 (258)
Q Consensus 26 hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d--- 102 (258)
+..|.|+|++++++||+++|||++... .+ + ..++..+. .....+.+..... .+....|++|.|+|
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~-~-~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG-W-IATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC-c-eEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 356899999999999999999998642 11 2 23333221 1233444432211 11234688888887
Q ss_pred -----------------------------CCCCcEEEEEEC
Q 025083 103 -----------------------------DPDGYIFELIQR 114 (258)
Q Consensus 103 -----------------------------DP~G~~iel~~~ 114 (258)
||+|+.|++.++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 999999998864
No 164
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=98.61 E-value=7e-07 Score=64.71 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=32.2
Q ss_pred cccccceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeec
Q 025083 17 PKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRD 54 (258)
Q Consensus 17 ~~~~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~ 54 (258)
.+.+...+.|..|.|+|++++++||+++|||++.....
T Consensus 3 ~~~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~ 40 (127)
T COG3324 3 GAGEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFD 40 (127)
T ss_pred ccccCCccEEEeeecCCHHHHHHHHHHhhCceeccccc
Confidence 34456678999999999999999999999999976543
No 165
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.58 E-value=2.5e-06 Score=60.19 Aligned_cols=114 Identities=27% Similarity=0.353 Sum_probs=64.1
Q ss_pred eeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc--cccCCceeeEEEEECC
Q 025083 122 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAISTDD 199 (258)
Q Consensus 122 ~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hi~~~v~d 199 (258)
.+-+|+|.|-+..++||+++|||++..... .++.++.. .....+.|-.++.... ....-.++++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~--~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQ--QKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-T--T--EEEEEEE--TTT-B--SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCC--CCceEEEEecCCccccccccCcceeeEEEEEcCC
Confidence 456899999999999999999999887653 35556642 2344455555544432 2222268999999999
Q ss_pred hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchhh
Q 025083 200 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 251 (258)
Q Consensus 200 ~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 251 (258)
.. ..+.| .+.|.++.. ...+.++.-+-..+|.|.+|.+....+.
T Consensus 74 ~~-EIe~L----Lar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 74 PK-EIEAL----LARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp HH-HHHHH----HHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--S-G
T ss_pred HH-HHHHH----Hhcccccce---eEEcCCceEEEEECCCCCEEEEEEcCCH
Confidence 54 45555 456665432 1223334555578999999999877654
No 166
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.51 E-value=2.1e-06 Score=60.65 Aligned_cols=84 Identities=23% Similarity=0.415 Sum_probs=51.8
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCC--
Q 025083 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED-- 102 (258)
Q Consensus 25 ~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~d-- 102 (258)
.+-.|+|.|-+..++||+++|||++..++. ..+.++.......+.||-.+............++++.++|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 467899999999999999999999988743 356666433334444444333322333444678999999987
Q ss_pred -----------------CCCCcEEEEEEC
Q 025083 103 -----------------DPDGYIFELIQR 114 (258)
Q Consensus 103 -----------------DP~G~~iel~~~ 114 (258)
..+|+.+|++.+
T Consensus 76 EIe~LLar~~~~~~l~kg~~gyAfe~vSP 104 (125)
T PF14506_consen 76 EIEALLARGAQYDRLYKGKNGYAFEAVSP 104 (125)
T ss_dssp HHHHHHHC-S--SEEEE-SSSEEEEEE-T
T ss_pred HHHHHHhcccccceeEEcCCceEEEEECC
Confidence 667777777744
No 167
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=98.48 E-value=1.7e-06 Score=62.79 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeee
Q 025083 26 HAVYRVGDLDRTIKYYTECFGMELLRKR 53 (258)
Q Consensus 26 hv~l~v~dl~~s~~FY~~~lG~~~~~~~ 53 (258)
...|.|+|+++|++||++ |||++..+.
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~ 31 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQ 31 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecC
Confidence 467999999999999999 999987653
No 168
>PRK10148 hypothetical protein; Provisional
Probab=98.44 E-value=1.6e-05 Score=59.92 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=71.0
Q ss_pred eEEec-ChhhHHHHHHHhcCCeEeeeec---C-----------------CccceeEEEeeecCCCceeEEEEEEecCCcc
Q 025083 125 MLRVG-DLGRSIKFYEKALGMKLLRTID---S-----------------PELKCALAMLGYAEEDQTTVLELAYSYGVTE 183 (258)
Q Consensus 125 ~l~v~-d~~~s~~FY~~~lG~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 183 (258)
-|..+ |.+++++||+++||.++..... . +++....+.+..++ ..+.+...... .
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g----~~lm~sD~~~~-~ 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAG----SDIMMSDAIPS-G 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECC----EEEEEECCCCC-c
Confidence 45554 8999999999999998765431 0 11222234444332 23333221111 1
Q ss_pred cccCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcc
Q 025083 184 YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 248 (258)
Q Consensus 184 ~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 248 (258)
...+ .-.++++.++|.+++ +++.+.| +.|+++..++...++ +.++..++||.|+.|.|...
T Consensus 81 ~~~~-~~~~l~l~~~d~ee~-~~~~~aL-a~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 KAHY-SGFTLVLDTQDVEEG-KRWFDNL-AANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred CCCC-CeEEEEEECCCHHHH-HHHHHHh-hCCCEEEecchhcch-hhccEEEECCCCCEEEEEec
Confidence 1111 234578888897653 3444443 589999988877765 45889999999999999765
No 169
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.39 E-value=5.6e-07 Score=73.72 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=82.8
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCcc--ceeEEEeeecCCCceeEEEEEEecCCc-------ccccCC
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPEL--KCALAMLGYAEEDQTTVLELAYSYGVT-------EYTKGN 188 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~-------~~~~~~ 188 (258)
..+++||.+.|.|...+..||+..|||+.....+-..+ .+....++.+ .....+.....+. -...|.
T Consensus 15 ~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g----~~vFv~~s~~~p~~~~~G~~l~~Hgd 90 (381)
T KOG0638|consen 15 FLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG----KIVFVFNSAYNPDNSEYGDHLVKHGD 90 (381)
T ss_pred eeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC----CEEEEEecCCCCCchhhhhhhhhccc
Confidence 36899999999999999999999999998764321111 1111112211 1111111111111 023456
Q ss_pred ceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCC--eeEEEEECCCCCEEEEEcchhhhH
Q 025083 189 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLN--TKITSFVDPDGWKTVLVDNEDFLK 253 (258)
Q Consensus 189 g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~--~~~~~~~DPdG~~iel~~~~~~~~ 253 (258)
|+--+||+|+|.+++.+.+ .++|+++..+|.+..... -+++.++.+......+++.....+
T Consensus 91 gvkdvafeVeD~da~~~~~----va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g 153 (381)
T KOG0638|consen 91 GVKDVAFEVEDADAIFQEA----VANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKG 153 (381)
T ss_pred chhceEEEecchHHHHHHH----HHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccc
Confidence 7878999999999999999 899999999987754432 467778877666666666554433
No 170
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.38 E-value=3.6e-06 Score=61.19 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=30.2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeec
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRD 54 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~ 54 (258)
++++||+|.|+|+++|++||+++||++++....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecc
Confidence 578999999999999999999999999987654
No 171
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.37 E-value=5e-06 Score=60.01 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=24.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 27 AVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 27 v~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
|.|.|+|++++.+||+++|||++..+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~ 27 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD 27 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc
Confidence 78999999999999999999998755
No 172
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.25 E-value=6.8e-06 Score=59.07 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 27 AVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 27 v~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
..|.|+|+++|++||++ |||++...
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~ 29 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWE 29 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEec
Confidence 45789999999999987 99998765
No 173
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.15 E-value=9e-05 Score=64.51 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=82.5
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCcc--ceeEEEeeecCCCceeEEEEEEecCC-----------------
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPEL--KCALAMLGYAEEDQTTVLELAYSYGV----------------- 181 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~----------------- 181 (258)
++||.+.|.|..++..||+..|||+.........+ ......++.+ ...+.+.....+
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 58999999999999999999999998775442111 1223334422 233333322111
Q ss_pred --cc------cccCCceeeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCC----CCeeEEEEECCCCCEEEEEcch
Q 025083 182 --TE------YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPG----LNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 182 --~~------~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~----~~~~~~~~~DPdG~~iel~~~~ 249 (258)
.. ...|.|+.-++|.|+|++++++++ .++|.+...+|..... +.-.+.-++-++|..+.|+++.
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A----~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~ 152 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTS----VAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYK 152 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHH----HHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccC
Confidence 00 124568888999999999999999 8999998887754322 1124555888999999999865
Q ss_pred h
Q 025083 250 D 250 (258)
Q Consensus 250 ~ 250 (258)
.
T Consensus 153 ~ 153 (398)
T PLN02875 153 G 153 (398)
T ss_pred C
Confidence 3
No 174
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.10 E-value=4.4e-05 Score=59.39 Aligned_cols=115 Identities=26% Similarity=0.335 Sum_probs=63.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCC--C---c-------ccCCC
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV--T---S-------YDIGT 91 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~---~-------~~~~~ 91 (258)
|+|+.+.|+||+++.++|++.||+++.....-+..+.....+.+++ . .|||....+. . . ...+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 6899999999999999998899999887654444233344444432 2 5788764221 1 0 01357
Q ss_pred CeeeEEEEcCC-------------------CCCCcEE-------------------EEEE-CCC---------CCCCcee
Q 025083 92 GFGHLAIATED-------------------DPDGYIF-------------------ELIQ-RGP---------TPEPLCQ 123 (258)
Q Consensus 92 ~~~hia~~v~d-------------------DP~G~~i-------------------el~~-~~~---------~~~~i~h 123 (258)
|+..+|+.++| +|+|..+ .+++ ..+ ...+|.+
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~~ 156 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGITR 156 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEEE
Confidence 88999999988 2333332 2221 111 1247889
Q ss_pred eeEEecChhhHHHHHHHhc
Q 025083 124 VMLRVGDLGRSIKFYEKAL 142 (258)
Q Consensus 124 v~l~v~d~~~s~~FY~~~l 142 (258)
|.+.++|.+++.++|.++|
T Consensus 157 v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 157 VVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEETTHHHHHHHHHHH-
T ss_pred EEEEeCCHHHHHHHHHhhC
Confidence 9999999999999999875
No 175
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=97.99 E-value=2.4e-05 Score=54.65 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=27.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeee
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKR 53 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~ 53 (258)
+-+=|+++-|+||+++++||.++||++.-+.+
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRst 34 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRST 34 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhccccccccc
Confidence 44679999999999999999999999876553
No 176
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.92 E-value=0.00021 Score=53.02 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=74.8
Q ss_pred CCceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc----cccCCceeeEE
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE----YTKGNAYAQVA 194 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~g~~hi~ 194 (258)
.++.+|.+.+++.++...++ +.|||+...+.... .+..++.+ ...+.|...+.... ...|.++.-++
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrsk----~v~l~rQG----~I~~vln~ep~s~a~~~~~~HG~sv~aia 78 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLF-TALGFQPVARHRSK----DVTLYRQG----DINFVLNSEPDSFAAEFAAQHGPSVCAIA 78 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHH-CCCCEEEECCECCC----SEEEEEET----TEEEEEEEESTSCHHHHHHHHSSEEEEEE
T ss_pred CCeEEEEEecCCHHHHHHHH-HHhCcceEEecCCc----ceEEEEeC----CEEEEEeCCCcchHHHHHHhcCCEEEEEE
Confidence 57889999999988888877 56999988765432 23444432 33343433322111 23477899999
Q ss_pred EEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcchh
Q 025083 195 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 250 (258)
Q Consensus 195 ~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 250 (258)
|.|+|..+++++. .+.|.+...+|.. .+.-.+--|+.+.|.++.|+++.+
T Consensus 79 frV~Da~~A~~rA----~~~GA~~~~~~~~--~~e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 79 FRVDDAAAAYERA----VALGAEPVQEPTG--PGELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp EEES-HHHHHHHH----HHTT--EEEEEEE--TT-BEEEEEE-CCC-EEEEEE--S
T ss_pred EEeCCHHHHHHHH----HHcCCcCcccCCC--CCcEeeeeEEccCCCEEEEEecCC
Confidence 9999999999999 8999987766522 222356679999999999998753
No 177
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.89 E-value=6.5e-05 Score=58.43 Aligned_cols=89 Identities=22% Similarity=0.288 Sum_probs=49.5
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCccc------------ccCC
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEY------------TKGN 188 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~------------~~~~ 188 (258)
|+|+.+.|+|++++.++|++.|||++......+..+-.-.++..++ . .|||.......+. ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 6899999999999999998889999887655443222222222222 3 7887764222111 1356
Q ss_pred ceeeEEEEECChHHHHHHHHHHHHHhCCe
Q 025083 189 AYAQVAISTDDVYKSAEVVNLVTQELGGK 217 (258)
Q Consensus 189 g~~hi~~~v~d~~~~~~~l~~~~~~~G~~ 217 (258)
|+.++++.++|+++..+++ ++.|+.
T Consensus 77 g~~~~~l~t~d~~~~~~~l----~~~G~~ 101 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARL----RAAGLD 101 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHH----HTTT-E
T ss_pred CeEEEEEecCCHHHHHHHH----HhcCCC
Confidence 8999999999999999999 788975
No 178
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=97.53 E-value=0.002 Score=47.18 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.6
Q ss_pred EEEe-CCHHHHHHHHHHhcCCEEeeee
Q 025083 28 VYRV-GDLDRTIKYYTECFGMELLRKR 53 (258)
Q Consensus 28 ~l~v-~dl~~s~~FY~~~lG~~~~~~~ 53 (258)
-|.+ .|.+++++||+++||.++....
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~ 30 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLT 30 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEE
Confidence 4667 8999999999999999988654
No 179
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=97.47 E-value=0.00056 Score=57.89 Aligned_cols=27 Identities=37% Similarity=0.699 Sum_probs=24.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEE
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFGMEL 49 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG~~~ 49 (258)
+.-||.|.|+|+++|++||+++|++..
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~ 273 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC 273 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC
Confidence 445999999999999999999988864
No 180
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=97.43 E-value=0.0013 Score=46.91 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=25.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeee
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKR 53 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~ 53 (258)
++.-.|.|-|+||++|++||+. ||+++-...
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~ 32 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQF 32 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCc
Confidence 3456789999999999999975 999987654
No 181
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.42 E-value=0.00047 Score=57.93 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=52.9
Q ss_pred cceeeEEEEEeC--CHHHHHHHHHHhcCCEEeeeeccCCC---CeEEEEeccCCCCceeEEEEEeecCCCc-------cc
Q 025083 21 KRRFLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPEE---KYSNAFLGFGPEQSYFVVELTYNYGVTS-------YD 88 (258)
Q Consensus 21 ~~~~~hv~l~v~--dl~~s~~FY~~~lG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~l~~~~~~~~-------~~ 88 (258)
+..|+|++..|+ .++.+..||+++|||+.....+.++. -++-++.+ ..+.+.|.|..+.+..+ ..
T Consensus 165 ~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~S---p~G~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 165 LTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVS---PCGKVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred ceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEec---CCCcEEeecccCCCchhHHHHHHHHh
Confidence 358999998887 99999999999999998876554432 12223222 23445555543332221 13
Q ss_pred CCCCeeeEEEEcCC
Q 025083 89 IGTGFGHLAIATED 102 (258)
Q Consensus 89 ~~~~~~hia~~v~d 102 (258)
.|.|+.||||..+|
T Consensus 242 ~G~GIQHIA~~T~d 255 (363)
T COG3185 242 RGEGIQHIAFGTDD 255 (363)
T ss_pred CCCcceEEEecccH
Confidence 47899999999998
No 182
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.21 E-value=0.021 Score=41.14 Aligned_cols=99 Identities=21% Similarity=0.202 Sum_probs=53.5
Q ss_pred cChhhHHHHHHHhcCCeEeee-ecCCc------cceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEECChH
Q 025083 129 GDLGRSIKFYEKALGMKLLRT-IDSPE------LKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 201 (258)
Q Consensus 129 ~d~~~s~~FY~~~lG~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~ 201 (258)
.+.++|.+||+++||-..... ...++ +..-.+.+..+ ...+...... .....+++ ..+++.++|.
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~~~-~sl~i~~~~~- 82 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFGNN-ISLCIECDDE- 82 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS----TT-EEEEEEESSH-
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCCCc-EEEEEEcCCH-
Confidence 689999999999999533322 22111 12222333332 2223322222 12233344 4488999994
Q ss_pred HHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEE
Q 025083 202 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 246 (258)
Q Consensus 202 ~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 246 (258)
+..+++.++|.+.| + +. . ++..++|..|..|.|+
T Consensus 83 ee~~~~f~~Ls~gG-~--------~~-~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 83 EEIDRIFDKLSEGG-Q--------WF-S-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHTTT-E--------TC-C-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHcCC-C--------cc-c-eeEEEEeCCCCEEEeC
Confidence 55667766666544 3 12 2 7889999999999885
No 183
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.47 E-value=0.012 Score=40.87 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=39.7
Q ss_pred ceeeeEEecChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcccccCCceeeEEEEEC-C
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD-D 199 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~-d 199 (258)
+..+.|+|+| +++..||.++||-... ..+.|....+ ..|. .+....-++..+-|.|+ |
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~G----~DL~-------~~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQG----PDLT-------IENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE-------CCGS-------S-TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeeccC----Cccc-------cCCCcEEeeEEEEEEecCc
Confidence 5678999999 8899999998872211 1122221100 0000 00111235667889998 5
Q ss_pred hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEE
Q 025083 200 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 245 (258)
Q Consensus 200 ~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 245 (258)
.+ +..|+.++.+ ..+.. +...+++.+.||+|..|.|
T Consensus 65 ~D--l~~L~~~le~--~~~fi------dKk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FD--LAALKSHLEE--QEFFI------DKKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp ----HHHHHHHTTT--S-EE--------TT-SEEEEE-TTS-EEEE
T ss_pred cc--HHHHHHHhcc--cceEe------cCCceEEEEECCcceEEEe
Confidence 33 4445433354 33332 2345889999999988876
No 184
>PF15067 FAM124: FAM124 family
Probab=96.13 E-value=0.094 Score=41.93 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=59.2
Q ss_pred CCceeeeEEec--ChhhHHHHHHHhcCCeEeeeecCCccceeEEEeeecCCCceeEEEEEEecCCcc-cccCCceeeEEE
Q 025083 119 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAI 195 (258)
Q Consensus 119 ~~i~hv~l~v~--d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~~ 195 (258)
.-+-.++|.|+ |.+.+++||+-+|+=+...+.. ++- .|.-+... ...+.|.-...+.. .+....-.-+.|
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~FC-~F~lys~~--~~~iQlsLK~lp~~~~p~p~esavLqF 199 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DFC-FFTLYSQP--GLDIQLSLKQLPPGMSPEPTESAVLQF 199 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----CcE-EEEEecCC--CeEEEEEeccCCCCCCcccccceEEEE
Confidence 35678899999 9999999999999977654432 111 22112222 34444433221111 111112334889
Q ss_pred EECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEE
Q 025083 196 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 245 (258)
Q Consensus 196 ~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 245 (258)
.|.|+.+++.-| .-++ . +-+.++ --..|||||.|-|
T Consensus 200 ~V~~igqLvpLL-------Pnpc-~-----PIS~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 200 RVEDIGQLVPLL-------PNPC-S-----PISETR-WQTEDYDGNKILL 235 (236)
T ss_pred EecchhhhcccC-------CCCc-c-----cccCCc-ceeeCCCCCEecc
Confidence 999987666444 1111 1 111112 3489999999854
No 185
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.17 Score=37.41 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=25.1
Q ss_pred EEEeC-CHHHHHHHHHHhcCCEEeeeeccCC
Q 025083 28 VYRVG-DLDRTIKYYTECFGMELLRKRDVPE 57 (258)
Q Consensus 28 ~l~v~-dl~~s~~FY~~~lG~~~~~~~~~~~ 57 (258)
-|.+. |-+++++||+++||.++..+...++
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d 35 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGD 35 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCc
Confidence 46778 9999999999999999887765544
No 186
>PF15067 FAM124: FAM124 family
Probab=95.43 E-value=0.29 Score=39.17 Aligned_cols=30 Identities=10% Similarity=0.260 Sum_probs=25.6
Q ss_pred eeeEEEEEeC--CHHHHHHHHHHhcCCEEeee
Q 025083 23 RFLHAVYRVG--DLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 23 ~~~hv~l~v~--dl~~s~~FY~~~lG~~~~~~ 52 (258)
.+--+.|+|+ |.+.+++||+-+|+-+....
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~ 159 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQ 159 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCccee
Confidence 5566889999 99999999999999877554
No 187
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=95.07 E-value=0.14 Score=38.01 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=46.6
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCc----ccCCCCeeeE
Q 025083 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS----YDIGTGFGHL 96 (258)
Q Consensus 21 ~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~hi 96 (258)
+.++.||.+.+++.++...+++ .|||+.+.+... .. ...| . ++.+.+.|........ ...|+++.-+
T Consensus 7 ~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrs--k~-v~l~-r----QG~I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 7 LDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRS--KD-VTLY-R----QGDINFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECC--CS-EEEE-E----ETTEEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCC--cc-eEEE-E----eCCEEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 5799999999999877777775 699998866421 11 2333 2 2335555554332211 1347899999
Q ss_pred EEEcCC
Q 025083 97 AIATED 102 (258)
Q Consensus 97 a~~v~d 102 (258)
+|+|+|
T Consensus 78 afrV~D 83 (139)
T PF14696_consen 78 AFRVDD 83 (139)
T ss_dssp EEEES-
T ss_pred EEEeCC
Confidence 999999
No 188
>PRK10148 hypothetical protein; Provisional
Probab=94.67 E-value=1.4 Score=33.14 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEeC-CHHHHHHHHHHhcCCEEeee
Q 025083 28 VYRVG-DLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 28 ~l~v~-dl~~s~~FY~~~lG~~~~~~ 52 (258)
-|... |.+++++||+++||.++...
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~ 31 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYK 31 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEE
Confidence 45554 89999999999999887644
No 189
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=92.96 E-value=1.4 Score=34.27 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=37.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCC-EEeeeeccCCCCeEEEEeccCC-----CCceeEEEEEeecCCCcccCCCCeee
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGM-ELLRKRDVPEEKYSNAFLGFGP-----EQSYFVVELTYNYGVTSYDIGTGFGH 95 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~l~~~~~~~~~~~~~~~~h 95 (258)
..++||+++|++.+.+.++-+..+.. ++....... | ..++.+.+.. ...--.+||.++.+ ..|+ ..|+.|
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~IN-G-RPI~l~~L~qPL~~~~~~I~~vELP~P~~-K~Yp-~eGWEH 108 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMIN-G-RPICLFKLNQPLQFGGWSIDCVELPYPKD-KRYP-QEGWEH 108 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEET-T-EEEEEEEEEEEEEETTEEEEEEEEE---S-S--S-S-EEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeC-C-eeEEEEEcCCchhcCCeeEEEEEeCCCCC-CCCC-CCCceE
Confidence 46899999999999999999998866 444432221 2 1222222110 01111355555433 2222 247777
Q ss_pred EEEEcCC
Q 025083 96 LAIATED 102 (258)
Q Consensus 96 ia~~v~d 102 (258)
|-|.+|.
T Consensus 109 IE~Vip~ 115 (185)
T PF06185_consen 109 IEFVIPS 115 (185)
T ss_dssp EEEE--S
T ss_pred EEEEecC
Confidence 7777765
No 190
>PRK11700 hypothetical protein; Provisional
Probab=92.94 E-value=1.6 Score=33.96 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=43.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCC-EEeeeeccCCCCeEEEEeccCCC-----CceeEEEEEeecCCCcccCCCCeee
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGM-ELLRKRDVPEEKYSNAFLGFGPE-----QSYFVVELTYNYGVTSYDIGTGFGH 95 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~~~h 95 (258)
..++||+++|.+.+.+.++.+..+-. ++...... .| ..++.+.+..+ ..--.+||.++.. ..|+ ..|+.|
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~I-NG-RPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Yp-~eGWEH 113 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENII-NG-RPICLFELDQPLQVGHWSIDCVELPYPGE-KRYP-HEGWEH 113 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhcccc-CC-eeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCC-CCCceE
Confidence 46899999999999999999887754 33332221 12 12333232111 1112455554432 2233 247778
Q ss_pred EEEEcCC
Q 025083 96 LAIATED 102 (258)
Q Consensus 96 ia~~v~d 102 (258)
|-+.+|.
T Consensus 114 IElVlp~ 120 (187)
T PRK11700 114 IELVLPG 120 (187)
T ss_pred EEEEecC
Confidence 8777775
No 191
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=91.74 E-value=2.9 Score=31.21 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=21.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCC
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGM 47 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~ 47 (258)
++||+|+|.+.+.+.++.+..+..
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~ 25 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQC 25 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHh
Confidence 689999999999999999888754
No 192
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=87.37 E-value=0.32 Score=33.83 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=10.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcC
Q 025083 23 RFLHAVYRVGDLDRTIKYYTECFG 46 (258)
Q Consensus 23 ~~~hv~l~v~dl~~s~~FY~~~lG 46 (258)
.+.-|.|+|+| +++..||+++||
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---
T ss_pred EEEEEEEeCCC-hhHHHHHHhccc
Confidence 46789999999 889999999886
No 193
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.99 E-value=22 Score=26.46 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=54.6
Q ss_pred cChhhHHHHHHHhcCCeEee---eec--CC---ccceeEEEeeecCCCceeEEEEEEecCCc-ccccCCceeeEEEEECC
Q 025083 129 GDLGRSIKFYEKALGMKLLR---TID--SP---ELKCALAMLGYAEEDQTTVLELAYSYGVT-EYTKGNAYAQVAISTDD 199 (258)
Q Consensus 129 ~d~~~s~~FY~~~lG~~~~~---~~~--~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~g~~hi~~~v~d 199 (258)
.+.+++.+||..+|-=.... +.. .+ .+.+..+.+..++ ...+.+. .++. .+....++. +.+.++|
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g---~~f~~ld--~g~~~~f~fneA~S-~~v~~~~ 87 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNG---QSFMALD--GGPNTSFKFNEAFS-FQVACDD 87 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECC---eEEEEEc--CCCCcCCCcCccEE-EEEEcCC
Confidence 79999999999998533221 111 11 2233333344322 1111111 1111 112222222 5566667
Q ss_pred hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEc
Q 025083 200 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 247 (258)
Q Consensus 200 ~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 247 (258)
.+..+++...+...|.+ ...+.+++|-.|.-|.|+-
T Consensus 88 -q~E~Drlwnal~~~g~e-----------~~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 88 -QEEIDRLWNALSDNGGE-----------AEACGWLKDKFGVSWQIVP 123 (151)
T ss_pred -HHHHHHHHHHHhccCcc-----------hhcceeEecccCcEEEEcH
Confidence 66777886666666652 1267799999999999973
No 194
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=74.28 E-value=40 Score=26.37 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=20.7
Q ss_pred CCCceeeeEEecChhhHHHHHHHhcCCe
Q 025083 118 PEPLCQVMLRVGDLGRSIKFYEKALGMK 145 (258)
Q Consensus 118 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~ 145 (258)
...++|++++|++.+.+.++-+..+-.-
T Consensus 32 ~~~~DHialRvn~~~~A~~~~~~l~~~G 59 (185)
T PF06185_consen 32 QYEIDHIALRVNSNETAERWKQALLQCG 59 (185)
T ss_dssp T-EEEEEEEE-S-HHHHHHHHHHHTTTE
T ss_pred ccCCcEEEEecCCHHHHHHHHHHHHHhC
Confidence 3468999999999999999988776543
No 195
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=71.99 E-value=9.6 Score=26.70 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=35.9
Q ss_pred EEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCE
Q 025083 194 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWK 242 (258)
Q Consensus 194 ~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~ 242 (258)
+|....+|..++.+.+..+..|+.+. +|.+.|..-.++-.++.|+|+.
T Consensus 12 s~d~~~LD~~~~~Ive~akrtg~~v~-GPiPLPTk~~~~tvlrsP~~~k 59 (104)
T COG0051 12 SFDHRLLDQVCREIVETAKRTGADVK-GPIPLPTKRERVTVLRSPHGEK 59 (104)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCeee-CCccCCCceEEEEEEeCCCCCC
Confidence 45556678888888777788999885 6677776555667789999863
No 196
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=68.98 E-value=39 Score=24.08 Aligned_cols=80 Identities=14% Similarity=0.273 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHhcCCEEeeeeccCCCCeEEEEeccCCCCceeEEEEEeecCCCcccCCCCeeeEEEEcCCCCCCcEEEE
Q 025083 32 GDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDDPDGYIFEL 111 (258)
Q Consensus 32 ~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hia~~v~dDP~G~~iel 111 (258)
.+.++|.+||+++||-..+.... ..+... + .....+-|..|.+. |..|-+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~-----------~~~~~~-------------~--~~~~~v~ha~l~i~----g~~lm~ 60 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFG-----------DYPDDE-------------P--EWKDKVMHAELTIG----GQKLMA 60 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEE-----------E-TTTC-------------T--THTTSEEEEEEEET----TEEEEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEEe-----------ECCCCC-------------C--CCCCcEEEEEEEEC----CeEEEE
Confidence 68999999999999853322210 000000 0 01224455555553 444433
Q ss_pred EECCC--CCCCceeeeEEecChhhHHHHHHHh
Q 025083 112 IQRGP--TPEPLCQVMLRVGDLGRSIKFYEKA 141 (258)
Q Consensus 112 ~~~~~--~~~~i~hv~l~v~d~~~s~~FY~~~ 141 (258)
....+ ....-..+.|.+.|.++..+.|.++
T Consensus 61 ~D~~~~~~~~~~~sl~i~~~~~ee~~~~f~~L 92 (116)
T PF06983_consen 61 SDGGPDFPFGNNISLCIECDDEEEIDRIFDKL 92 (116)
T ss_dssp EEESTS----TTEEEEEEESSHHHHHHHHHHH
T ss_pred ECCCCCCCCCCcEEEEEEcCCHHHHHHHHHHH
Confidence 33221 1123356777888888888888653
No 197
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=68.28 E-value=27 Score=25.06 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=31.6
Q ss_pred EECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCC
Q 025083 196 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 241 (258)
Q Consensus 196 ~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 241 (258)
....++..++.+.+..++.|+.+. +|.+.|....++...+.|.|+
T Consensus 27 d~~~Ld~~~~~Ii~~ak~~g~~v~-GPipLPtK~~~~tvlrSPhg~ 71 (115)
T PTZ00039 27 NLKSIEKVCADIITGAKEKNLKVT-GPVRMPVKTLRITTRKSPCGE 71 (115)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEeE-CCccCCceeEEEEeeeCCCCC
Confidence 334467777777777788888886 566676654456668999975
No 198
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.43 E-value=36 Score=26.11 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=40.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCC-EEeeeeccCCCCeEEEEeccCCC--Cce---eEEEEEeecCCCcccCCCCeee
Q 025083 22 RRFLHAVYRVGDLDRTIKYYTECFGM-ELLRKRDVPEEKYSNAFLGFGPE--QSY---FVVELTYNYGVTSYDIGTGFGH 95 (258)
Q Consensus 22 ~~~~hv~l~v~dl~~s~~FY~~~lG~-~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~l~~~~~~~~~~~~~~~~h 95 (258)
..++|++|+|.+-+-+..+-+..+-. ++....-. .| ..++.+....+ -.+ -.+||.++.. ..|+. .|+.|
T Consensus 38 ~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~i-NG-RpI~li~l~~Pl~v~~w~id~iELP~P~~-K~YP~-egWEH 113 (185)
T COG3102 38 YTADHIALRVHQEQTAKRWRRGLLQCGELLSENLI-NG-RPICLIKLHQPLQVAHWQIDIIELPYPKN-KRYPH-EGWEH 113 (185)
T ss_pred cccceeEEEeCcHHHHHHHHHHHHHHHHHhhhhhc-CC-ceEEEEEcCCcceecceEEEEEEccCCcC-CCCCC-cCcee
Confidence 46899999999987776665544432 22221111 11 12333332111 011 1355554433 33433 48888
Q ss_pred EEEEcCCCC
Q 025083 96 LAIATEDDP 104 (258)
Q Consensus 96 ia~~v~dDP 104 (258)
|-+..|.||
T Consensus 114 IEiVlP~~p 122 (185)
T COG3102 114 IEIVLPGDP 122 (185)
T ss_pred EEEEcCCCh
Confidence 888888644
No 199
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.23 E-value=29 Score=22.55 Aligned_cols=51 Identities=18% Similarity=-0.021 Sum_probs=31.7
Q ss_pred EEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCC-CeeEEEEECCCCCEE
Q 025083 193 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGL-NTKITSFVDPDGWKT 243 (258)
Q Consensus 193 i~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~-~~~~~~~~DPdG~~i 243 (258)
+.+...|--.++.++...+.+.|+.|..--..+.+. ..-+||++|++|+.+
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 344455544555555556689999886532222221 235799999999987
No 200
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=57.73 E-value=4.9 Score=23.29 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=19.2
Q ss_pred CCceeeeEEecChhhHHHHHHHhc
Q 025083 119 EPLCQVMLRVGDLGRSIKFYEKAL 142 (258)
Q Consensus 119 ~~i~hv~l~v~d~~~s~~FY~~~l 142 (258)
.+++-..+.+++++++.+||+..|
T Consensus 10 gp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CccccCCCccccccchhHHHHHHH
Confidence 345566777799999999999866
No 201
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=57.72 E-value=38 Score=22.36 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 199 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 199 d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
+.+++.+.+ ++.|++|..- .....+..-+...|.||+.+++.-..
T Consensus 30 ~~~~~~~~l----~~~G~~v~~v--e~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKL----EAQGYQVREV--EFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHH----HhcCCceEEE--EEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 556677777 7899866431 12122345677899999999997544
No 202
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=53.20 E-value=95 Score=23.32 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.5
Q ss_pred ceeeeEEecChhhHHHHHHHhcCC
Q 025083 121 LCQVMLRVGDLGRSIKFYEKALGM 144 (258)
Q Consensus 121 i~hv~l~v~d~~~s~~FY~~~lG~ 144 (258)
++|++++|.+.+.+.+|-+..+-.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~ 25 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQC 25 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHh
Confidence 689999999999999998776643
No 203
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.93 E-value=32 Score=21.60 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=18.7
Q ss_pred eeeEEEEEC--ChHHHHHHHHHHHHHhCCeeecC
Q 025083 190 YAQVAISTD--DVYKSAEVVNLVTQELGGKITRQ 221 (258)
Q Consensus 190 ~~hi~~~v~--d~~~~~~~l~~~~~~~G~~i~~~ 221 (258)
...+.|.++ +.+.+.+.| +++|+++.++
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L----~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDL----RRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHH----HHCCCeeeCC
Confidence 334555554 666666666 8999999874
No 204
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=52.43 E-value=33 Score=23.84 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=31.1
Q ss_pred ECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCC
Q 025083 197 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 241 (258)
Q Consensus 197 v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 241 (258)
...++..++.+.+..++.|+.+. +|.+.|....++...+.|.|+
T Consensus 12 ~~~Ld~~~~~I~~~ak~~g~~~~-GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 12 VRSLEKVCAQIKRIAEKTGVRMS-GPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEE-CCccCCcceEEEEeeeCCCCC
Confidence 34467777777766788898875 666777655566678999864
No 205
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.58 E-value=58 Score=21.32 Aligned_cols=52 Identities=13% Similarity=-0.025 Sum_probs=32.7
Q ss_pred EEEEECChHHHHHHHHHHHHHhCCeeecCCccCCC-CCeeEEEEECCCCCEEE
Q 025083 193 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPG-LNTKITSFVDPDGWKTV 244 (258)
Q Consensus 193 i~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~-~~~~~~~~~DPdG~~ie 244 (258)
+.+...|--.++-.+-..+...|+.|..--..+.+ ....++|++|.+|..+.
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 34555665555556656668899988653222211 12357999999999874
No 206
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.20 E-value=40 Score=20.47 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=20.1
Q ss_pred ceeeEEEEECChHHHHHHHHHHHHHhCCee
Q 025083 189 AYAQVAISTDDVYKSAEVVNLVTQELGGKI 218 (258)
Q Consensus 189 g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i 218 (258)
+...+.|.+++.+.+.+.| +++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L----~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVL----QERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHH----HHCCceE
Confidence 4566889999877777776 8899876
No 207
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=46.25 E-value=47 Score=23.21 Aligned_cols=43 Identities=19% Similarity=0.401 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCC
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 241 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 241 (258)
..++..+..+.+.+++.|+.+. +|.+.|....++...+.|-|+
T Consensus 14 ~~Ld~~~~~I~~~~k~~g~~~~-GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 14 EDLDEVCDQIKEIAEKTGVDMS-GPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred HHHHHHHHHHHHHHHHcCCeEE-CCCcCCceeEEEEeeeCCCCC
Confidence 4467777777777788999886 566676654566678999865
No 208
>PHA02754 hypothetical protein; Provisional
Probab=40.92 E-value=59 Score=20.01 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
.|+.+++.++++.|.++|+=+.+--..... + .-+.+.-.||..+++.+.+
T Consensus 14 K~Fke~MRelkD~LSe~GiYi~RIkai~~S-G-dkIVVi~aD~I~i~ls~Te 63 (67)
T PHA02754 14 KDFKEAMRELKDILSEAGIYIDRIKAITTS-G-DKIVVITADAIKIELSETE 63 (67)
T ss_pred hHHHHHHHHHHHHHhhCceEEEEEEEEEec-C-CEEEEEEcceEEEEEEeee
Confidence 467788889999999999865432111111 1 2334556678888886543
No 209
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=39.50 E-value=61 Score=22.63 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=31.1
Q ss_pred EEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCC
Q 025083 195 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 241 (258)
Q Consensus 195 ~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 241 (258)
|....++..++.+.+.++..|+.+. +|.+.|..-.++..++.|.++
T Consensus 16 ~d~~~L~~~~~~I~~~~k~~~~~~~-GpipLPtk~~~~TvlrSPhv~ 61 (101)
T CHL00135 16 FNHELLNSSCKKIIDTASRTNATAV-GPIPLPTKRRIYCVLRSPHVD 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEe-CCcCCCcEEEEEEEecCCCCC
Confidence 4445567777777666677888876 555666544456678999774
No 210
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=38.19 E-value=31 Score=29.30 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=21.8
Q ss_pred cCCceeeEEEEE------CChHHHHHHHHHHHHHhCCeee
Q 025083 186 KGNAYAQVAIST------DDVYKSAEVVNLVTQELGGKIT 219 (258)
Q Consensus 186 ~~~g~~hi~~~v------~d~~~~~~~l~~~~~~~G~~i~ 219 (258)
.|..++|+...| .||+++.+.+ +++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l----~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFL----KERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHH----HHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHH----HHcCCCcc
Confidence 567899999999 9999888888 88888776
No 211
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=34.93 E-value=94 Score=21.10 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=11.8
Q ss_pred eEEEEECChHHHHHHH
Q 025083 192 QVAISTDDVYKSAEVV 207 (258)
Q Consensus 192 hi~~~v~d~~~~~~~l 207 (258)
+..|.|+| .+...+|
T Consensus 46 ~a~FfV~D-~~tA~aL 60 (88)
T PF09162_consen 46 RAQFFVED-ASTASAL 60 (88)
T ss_dssp EEEEEESS-HHHHHHH
T ss_pred EEEEEeCC-HHHHHHH
Confidence 57899999 4566778
No 212
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=34.30 E-value=39 Score=28.17 Aligned_cols=51 Identities=16% Similarity=0.358 Sum_probs=32.2
Q ss_pred EEEEECC-hHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEEEEcch
Q 025083 193 VAISTDD-VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 249 (258)
Q Consensus 193 i~~~v~d-~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 249 (258)
|+.+|+| +..+++-| ++....+ .|.++.-+.+++.-|+.++|+++||.+..
T Consensus 161 iS~evdDsl~~il~lL----r~~D~sF--rpvPh~~d~ak~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 161 ISREVDDSLPPILDLL----RSVDPSF--RPVPHRSDPAKSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred hhHHhcccccHHHHHH----hccCccc--ccCCccCCCccceeeecCCCeEEEEeccC
Confidence 5666765 44445444 5544444 44444333456666799999999999754
No 213
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=33.16 E-value=16 Score=24.55 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=31.6
Q ss_pred cccchhhccCcccccceeeEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 025083 7 AAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~hv~l~v~dl~~s~~FY~~~lG~~~~~~ 52 (258)
..|++++.+|..+.+.. +|++++.+|=++++...+++.
T Consensus 29 t~sG~~Iv~~L~~n~~~--------~s~~~aE~fGQdLv~~gfir~ 66 (84)
T cd04436 29 TSSGSEIVSWLQENMPE--------KDLDAAEAFGQDLLNQGFLRL 66 (84)
T ss_pred cccHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhCchHHH
Confidence 35788999999997543 999999999999988877754
No 214
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=32.34 E-value=1.1e+02 Score=20.86 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=24.8
Q ss_pred eeEEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCC
Q 025083 191 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPD 239 (258)
Q Consensus 191 ~hi~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPd 239 (258)
.|+-|.+++ ++..+.+.+.|.+.|++...- .-.+...+|++|.+
T Consensus 22 YhLEi~~~~-~e~a~~l~~lL~~~~i~~k~~----~r~~~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFND-EEFAEQLKELLNKFGINAKII----KRKNKYVVYLKDSE 65 (93)
T ss_dssp --EEEEES--HHHHHHHHHHHHHH----EEE----EESSEEEEEE--HH
T ss_pred eEEEEecCC-HHHHHHHHHHHHHcCCCceee----eecCceEEEEcCHH
Confidence 789999998 678888888888888865431 11234678888764
No 215
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.03 E-value=1.2e+02 Score=18.96 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=19.7
Q ss_pred ceeeEEEEECChHHHHHHHHHHHHHhCCee
Q 025083 189 AYAQVAISTDDVYKSAEVVNLVTQELGGKI 218 (258)
Q Consensus 189 g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i 218 (258)
+..++.+++.+- +..+.+.+.|+++|+++
T Consensus 38 ~~v~v~ie~~~~-~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDR-EDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCH-HHHHHHHHHHHHcCCCc
Confidence 455688888873 44455555668999875
No 216
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=31.25 E-value=97 Score=21.58 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCC
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 241 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 241 (258)
..++..++.+....+..|+++. +|.+.|....++..++.|.++
T Consensus 16 ~~L~~~~~~i~~~a~~~~i~v~-GpipLPtk~~r~tvlrSPhv~ 58 (102)
T PRK00596 16 RLLDQSAKKIVETAKRTGAQVR-GPIPLPTKKERFTVLRSPHVN 58 (102)
T ss_pred HHHHHHHHHHHHHHHHcCCeEE-CCcCCCcEEEEEEEeeCCCCC
Confidence 3456666666655677888875 555666544466678999886
No 217
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=30.58 E-value=69 Score=23.55 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=21.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEe
Q 025083 24 FLHAVYRVGDLDRTIKYYTECFGMELL 50 (258)
Q Consensus 24 ~~hv~l~v~dl~~s~~FY~~~lG~~~~ 50 (258)
-||+++...|..+.++-..+.||++++
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 699999999999999999999999875
No 218
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=29.09 E-value=93 Score=21.51 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=30.0
Q ss_pred ECChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCC
Q 025083 197 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 241 (258)
Q Consensus 197 v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~ 241 (258)
...++...+.+...+...|+.+. +|.+.|....++..++.|.++
T Consensus 12 ~~~L~~~~~~i~~~a~~~gi~~~-gpi~LPtk~~~~tvlrSPhv~ 55 (99)
T TIGR01049 12 HRLLDQSTKKIVETAKRTGAQVK-GPIPLPTKKERYTVLRSPHVN 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCcee-cccCCCCEEEEEEEeeCCCCC
Confidence 34466666777666677898885 566666544456678999886
No 219
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.19 E-value=48 Score=26.69 Aligned_cols=21 Identities=19% Similarity=0.582 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHhcCCEEeee
Q 025083 32 GDLDRTIKYYTECFGMELLRK 52 (258)
Q Consensus 32 ~dl~~s~~FY~~~lG~~~~~~ 52 (258)
.|+.+++.||.+.||+++..-
T Consensus 145 a~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hccHHHHHHHHHhcCceeeec
Confidence 477888999999999998653
No 220
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=25.75 E-value=85 Score=15.21 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=9.0
Q ss_pred eEEEEECCCCCEE
Q 025083 231 KITSFVDPDGWKT 243 (258)
Q Consensus 231 ~~~~~~DPdG~~i 243 (258)
-...+.|++|+.|
T Consensus 7 I~~i~~D~~G~lW 19 (24)
T PF07494_consen 7 IYSIYEDSDGNLW 19 (24)
T ss_dssp EEEEEE-TTSCEE
T ss_pred EEEEEEcCCcCEE
Confidence 3456899999887
No 221
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.35 E-value=1.9e+02 Score=23.46 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=17.8
Q ss_pred cChhhHHHHHHHhcCCeEeee
Q 025083 129 GDLGRSIKFYEKALGMKLLRT 149 (258)
Q Consensus 129 ~d~~~s~~FY~~~lG~~~~~~ 149 (258)
.|++++..||.+.||++...-
T Consensus 145 a~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hccHHHHHHHHHhcCceeeec
Confidence 478888999999999987654
No 222
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=24.68 E-value=46 Score=21.14 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=19.9
Q ss_pred hccCcccccceeeEEEEEeC-CHHHHHHHHHHhcCCE
Q 025083 13 LLEWPKKDKRRFLHAVYRVG-DLDRTIKYYTECFGME 48 (258)
Q Consensus 13 ~~~~~~~~~~~~~hv~l~v~-dl~~s~~FY~~~lG~~ 48 (258)
+.++..+ .++.++.+.|. +=..+.+||++ +||+
T Consensus 50 ~~~~~~~--~g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 50 AEEWARK--RGIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp HHHHHHH--TTESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred hhhhHHh--cCccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 4445555 34566666555 44448999975 7764
No 223
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=23.73 E-value=1.4e+02 Score=20.18 Aligned_cols=31 Identities=23% Similarity=0.068 Sum_probs=21.3
Q ss_pred CceeeEEEEECChHHHHHHHHHHHHHhCCeee
Q 025083 188 NAYAQVAISTDDVYKSAEVVNLVTQELGGKIT 219 (258)
Q Consensus 188 ~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~i~ 219 (258)
.+...++|.|++-++ .+.+.++|++.|+++.
T Consensus 49 ~a~vlvgi~v~~~~~-~~~l~~~L~~~gy~~~ 79 (91)
T PF00585_consen 49 FARVLVGIEVPDAED-LEELIERLKALGYPYE 79 (91)
T ss_dssp CSEEEEEEE-SSTHH-HHHHHHHHTSSS-EEE
T ss_pred eeeEEEEEEeCCHHH-HHHHHHHHHHcCCCeE
Confidence 366778999987443 6677777799999875
No 224
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=23.54 E-value=66 Score=17.16 Aligned_cols=17 Identities=29% Similarity=0.862 Sum_probs=13.2
Q ss_pred eCCHHHHHHHHHHhcCC
Q 025083 31 VGDLDRTIKYYTECFGM 47 (258)
Q Consensus 31 v~dl~~s~~FY~~~lG~ 47 (258)
..|.++++.+|++.|.+
T Consensus 12 ~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 46889999999997754
No 225
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=23.18 E-value=1.7e+02 Score=19.38 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=16.8
Q ss_pred eeEEecChhhHHHHHHHhcCCeEeee
Q 025083 124 VMLRVGDLGRSIKFYEKALGMKLLRT 149 (258)
Q Consensus 124 v~l~v~d~~~s~~FY~~~lG~~~~~~ 149 (258)
+.....+=..|..+|++ |||+....
T Consensus 58 ~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 58 FLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 34444577789999975 99997754
No 226
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=22.52 E-value=1.2e+02 Score=20.51 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCeEeeeecCCc
Q 025083 134 SIKFYEKALGMKLLRTIDSPE 154 (258)
Q Consensus 134 s~~FY~~~lG~~~~~~~~~~~ 154 (258)
+.+|+++-||+.+...-.+.+
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed 69 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFED 69 (86)
T ss_pred hHHHHHhccCCceEecCCCcC
Confidence 459999999999887655444
No 227
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.19 E-value=1.8e+02 Score=19.10 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=19.4
Q ss_pred ceeeEEEEECC----hHHHHHHHHHHHHHhCCeeec
Q 025083 189 AYAQVAISTDD----VYKSAEVVNLVTQELGGKITR 220 (258)
Q Consensus 189 g~~hi~~~v~d----~~~~~~~l~~~~~~~G~~i~~ 220 (258)
+...+.++++| ++.+.+.| +++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L----~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDL----KSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHH----HHCCCCeEE
Confidence 34457788888 55555555 899998764
No 228
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=21.96 E-value=2.7e+02 Score=23.06 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHHhCCeeecCCccCCCCCeeEEEEECCCCCEEE
Q 025083 198 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTV 244 (258)
Q Consensus 198 ~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~ie 244 (258)
.|+..-.+.+.+.+++.|+++. +.. ..--++|+.||+++.+=
T Consensus 144 ~D~~~h~~~i~k~wk~rgi~F~--~~k---~slISV~~h~~d~~~lF 185 (250)
T PF14133_consen 144 KDIKVHAEKIQKYWKERGIKFN--NDK---ASLISVFLHDPDDNSLF 185 (250)
T ss_pred CCHHHHHHHHHHHHHHcCceeC--CCc---eEEEEEEEEcCCCCeEE
Confidence 4677778888888899999982 111 11245777888876554
No 229
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=21.84 E-value=1.7e+02 Score=19.16 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=21.8
Q ss_pred EEEEECChHHHHHHHHHHHHHhCCeeec
Q 025083 193 VAISTDDVYKSAEVVNLVTQELGGKITR 220 (258)
Q Consensus 193 i~~~v~d~~~~~~~l~~~~~~~G~~i~~ 220 (258)
++-..+|++++++++.++.+++|..-+.
T Consensus 20 v~~~~~d~d~Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 20 VSTESDNVDEIVENLREKVKAKGGMGLI 47 (74)
T ss_pred EEEecCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3445579999999999988888886443
No 230
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.44 E-value=2.3e+02 Score=17.90 Aligned_cols=50 Identities=22% Similarity=0.188 Sum_probs=32.0
Q ss_pred EEEEECChHHHHHHHHHHHHHhCCeeecCCccCCCC-CeeEEEEECCCCCE
Q 025083 193 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGL-NTKITSFVDPDGWK 242 (258)
Q Consensus 193 i~~~v~d~~~~~~~l~~~~~~~G~~i~~~p~~~~~~-~~~~~~~~DPdG~~ 242 (258)
+.+.++|-..++.++-..+.++|+.|..--....+. .--.+++.|++|..
T Consensus 4 i~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~ 54 (72)
T cd04926 4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP 54 (72)
T ss_pred EEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCc
Confidence 567777766777777777799999886431111111 12356789999885
No 231
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=21.07 E-value=20 Score=21.80 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=22.6
Q ss_pred hccCcccccceeeEEEEEeCCHHHHHHHHHHhcCC
Q 025083 13 LLEWPKKDKRRFLHAVYRVGDLDRTIKYYTECFGM 47 (258)
Q Consensus 13 ~~~~~~~~~~~~~hv~l~v~dl~~s~~FY~~~lG~ 47 (258)
+.-|.+.....+..-.++.+.+...++||++.|-|
T Consensus 19 l~kwk~~~~~lVp~~~~~~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 19 LAKWKDGQASLVPNKELNVKCPLLVISFYEEHLTY 53 (54)
T ss_pred EEEEeCCeEEEEEHHHHHhhCcHHHHHHHHHhccc
Confidence 34455533333333346677999999999998755
No 232
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=20.94 E-value=64 Score=23.16 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=19.0
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhcCCEEe
Q 025083 23 RFLHAVYRVG-DLDRTIKYYTECFGMELL 50 (258)
Q Consensus 23 ~~~hv~l~v~-dl~~s~~FY~~~lG~~~~ 50 (258)
++..+.|.+. +-..+..||++ +||+..
T Consensus 109 ~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~ 136 (144)
T PRK10146 109 GAEMTELSTNVKRHDAHRFYLR-EGYEQS 136 (144)
T ss_pred CCcEEEEecCCCchHHHHHHHH-cCCchh
Confidence 5566666654 44589999976 898754
No 233
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=20.32 E-value=76 Score=25.73 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=18.6
Q ss_pred hCCeeecCCccCCCCCeeEEEEECCCCCEEEEE
Q 025083 214 LGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 246 (258)
Q Consensus 214 ~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 246 (258)
.|+.+...|.. +..-.++++||||+-.-++
T Consensus 197 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 197 PTIDFTKLPSK---QPVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred ccceeeecccc---cceEEEEeeCCCccchhhc
Confidence 56666654322 1235677899999876443
Done!