BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025084
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 143/268 (53%), Gaps = 11/268 (4%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAP 60
R+Q A R+ +P E F+E+++ + +++W+PP+G + SLY+RP ++ + LG+ P
Sbjct: 105 RLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRP 164
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ EY +L+ SP G YFK GI P+++ + HE RA+PGGTG K GNY
Sbjct: 165 SNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAA 224
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDVA 176
G V++LD + +RY+EE+ N+F V G+ + TP + G++LPGITR S++ +A
Sbjct: 225 EMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLA 284
Query: 177 QSQGFQXXXXX------XXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGA 230
GF + EVF GTA V++PV + + + +G G
Sbjct: 285 TDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPGE 344
Query: 231 VSQQLYSVLTQLQMGLIADKMNWTLELS 258
++ L LT +Q G AD W L+
Sbjct: 345 ITMALRDTLTGIQRGTFADTHGWMARLN 372
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 143/268 (53%), Gaps = 11/268 (4%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAP 60
R+Q A R+ +P E F+E+++ + +++W+PP+G + SLY+RP ++ + LG+ P
Sbjct: 106 RLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRP 165
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ EY +L+ SP G YFK GI P+++ + HE RA+PGGTG K GNY
Sbjct: 166 SNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAA 225
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDVA 176
G V++LD + +RY+EE+ N+F V G+ + TP + G++LPGITR S++ +A
Sbjct: 226 EMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLA 285
Query: 177 QSQGFQXXXXX------XXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGA 230
GF + EVF GTA V++PV + + + +G G
Sbjct: 286 TDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPGE 345
Query: 231 VSQQLYSVLTQLQMGLIADKMNWTLELS 258
++ L LT +Q G AD W L+
Sbjct: 346 ITMALRDTLTGIQRGTFADTHGWMARLN 373
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 141/261 (54%), Gaps = 5/261 (1%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG-SLYIRPLLMGSGAVLGLAP 60
R+Q A+R+ MP ++F++A K V AN+ ++PP G G +LY+RPLL+G G V+G+ P
Sbjct: 85 RLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHP 144
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
A EY F I+ PVGNYFK G+AP N +++ + RA P GTG K GNY
Sbjct: 145 ADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAH 204
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIF-VVKGNVISTPAIKGTILPGITRKSIIDVAQSQ 179
+SDV+YLD +EEV S N F + K N TP + +ILP +T+ S++ +A+ +
Sbjct: 205 ERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITP-LSPSILPSVTKYSLLYLAEHR 263
Query: 180 -GFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGK-RVSYGEGGFGAVSQQLYS 237
G + E GTA V+SP+G + + V Y E G V+ +LY
Sbjct: 264 FGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFHVFYSETEVGPVTHKLYD 323
Query: 238 VLTQLQMGLIADKMNWTLELS 258
LT +Q G + W ++
Sbjct: 324 ELTGIQFGDVKAPEGWIYKVD 344
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 136/267 (50%), Gaps = 11/267 (4%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAP 60
R++ A R+ +P F+E+++ + +K W+P +G + +LY+RP + + LG+ P
Sbjct: 101 RLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFIFATEPGLGVRP 160
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
A +Y +L+ SP G YFK GIAP+++ V E RA PGGTG K GNY
Sbjct: 161 ATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGGNYAASLLAQAEAA 220
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDVA 176
G V++LD V +RY+EE+ NIF V G+ + TP + G++LPGITR S++ +A
Sbjct: 221 ENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLPGITRDSLLQLA 280
Query: 177 QSQGFQXXXXX------XXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGA 230
GF + EVF GTA V++PV + + +G G
Sbjct: 281 IDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRHGASEFRIADGQPGE 340
Query: 231 VSQQLYSVLTQLQMGLIADKMNWTLEL 257
V+ L LT +Q G AD W L
Sbjct: 341 VTMALRDTLTGIQRGTFADTHGWMARL 367
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 131/261 (50%), Gaps = 7/261 (2%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG-SLYIRPLLMGSGAVLGLAP 60
RM++ R+ MP S EQF++A V AN+ ++PP G G SLY+RP ++G G +G+
Sbjct: 100 RMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRT 159
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
APE+ F ++ PVG YFK G+ P N + + RA P GTG K GNY
Sbjct: 160 APEFIFSVFCVPVGPYFKGGLTPTNFITS-DYDRAAPHGTGAAKVGGNYAASLLPGYEAK 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVV--KGNVISTPAIKGTILPGITRKSIIDVAQS 178
++DV+YLD +EE + N F + G TP +ILP IT+ S++ +A+
Sbjct: 219 KRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTPQ-SPSILPSITKYSLLWLAEH 277
Query: 179 Q-GFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGK-RVSYGEGGFGAVSQQLY 236
+ G + E GTA V++P+G I + V Y E G V+++LY
Sbjct: 278 RLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDDFHVFYSESEPGPVTRRLY 337
Query: 237 SVLTQLQMGLIADKMNWTLEL 257
L +Q G W +++
Sbjct: 338 DELVGIQYGDKEAPEGWIVKV 358
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 128/271 (47%), Gaps = 17/271 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R +P E+ +E ++ V ++ W+P S SLYIRP +G+ LG+
Sbjct: 99 RMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPAFIGTEPSLGVKKP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + +SPVG YF G P++L + RA GGTG K GNY
Sbjct: 159 TKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEDV 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + EV + N+F+ N ++TP + G ILPG+TR+ I+D+
Sbjct: 219 DNGCQQVLWL-YGRDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDL 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGKRVSYGEGGF 228
A G F+ A E+F +GTA VV PV I Y G+ +
Sbjct: 278 AHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCPVSDILYKGETIHIPTMEN 337
Query: 229 G-AVSQQLYSVLTQLQMGLIADKMNWTLELS 258
G ++ ++ S LT +Q G ++ +WT+ LS
Sbjct: 338 GPKLASRILSKLTDIQYG--REESDWTIVLS 366
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 128/271 (47%), Gaps = 17/271 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R +P E+ +E ++ V ++ W+P S SLYIRP +G+ LG+
Sbjct: 119 RMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKP 178
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + +SPVG YF G P++L + RA GGTG K GNY
Sbjct: 179 TKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAV 238
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + EV + N+F+ N ++TP + G ILPG+TR+ I+D+
Sbjct: 239 DNGCQQVLWL-YGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDL 297
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGKRVSYGEGGF 228
A G F+ A E+F +GTA VV PV I Y G+ +
Sbjct: 298 AHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMEN 357
Query: 229 G-AVSQQLYSVLTQLQMGLIADKMNWTLELS 258
G ++ ++ S LT +Q G ++ +WT+ LS
Sbjct: 358 GPKLASRILSKLTDIQYG--REERDWTIVLS 386
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 14/233 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGKRV 221
AQ+ G F+ A EVF +GTA V+PV I Y + +
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVAPVHRILYKDRNL 330
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 14/233 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGKRV 221
AQ+ G F+ A EVF +GTA V+PV I Y + +
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAPVHRILYKDRNL 330
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 14/233 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGKRV 221
AQ+ G F+ A EVF +GTA V PV I Y + +
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVCPVHRILYKDRNL 330
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 14/233 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGKRV 221
AQ+ G F+ A EVF +GTA V PV I Y + +
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNL 330
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 14/233 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+ +PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGKRV 221
AQ+ G F+ A EVF +GTA V PV I Y + +
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNL 330
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 111/233 (47%), Gaps = 14/233 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+ +PS + +E ++ + +K W+P + SL +RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGKRV 221
AQ+ G F+ A EVF +GTA V PV I Y + +
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNL 330
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 109/257 (42%), Gaps = 18/257 (7%)
Query: 2 RMQVGAERMCMP-SPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
R+ A+ P S S+++ +EA + + N S YIRPL+ +G+ P
Sbjct: 60 RLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNP 112
Query: 61 APEYT--FLIYVSPVGNYF-KEGIAPINLVVEHELHRATPGGT-GGVKTIGNYXXXXXXX 116
Y+ +I P G Y E + + +RA P K GNY
Sbjct: 113 PAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVG 172
Query: 117 XXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVA 176
GY + + LD Y+ E + N+F VK V+ TP + LPGITR +II +A
Sbjct: 173 SEARRHGYQEGIALDV--NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLA 230
Query: 177 QSQGFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLY 236
+ G + ADEVF +GTA ++PV S+ + GEG G V++++
Sbjct: 231 KELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV----DGIQVGEGRCGPVTKRIQ 286
Query: 237 SVLTQLQMGLIADKMNW 253
L G DK W
Sbjct: 287 QAFFGLFTGETEDKWGW 303
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 109/257 (42%), Gaps = 18/257 (7%)
Query: 2 RMQVGAERMCMP-SPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
R+ A+ P S S+++ +EA + + N S YIRPL+ +G+ P
Sbjct: 59 RLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNP 111
Query: 61 APEYT--FLIYVSPVGNYF-KEGIAPINLVVEHELHRATPGGT-GGVKTIGNYXXXXXXX 116
Y+ +I P G Y E + + +RA P K GNY
Sbjct: 112 PAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVG 171
Query: 117 XXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVA 176
GY + + LD Y+ E + N+F VK V+ TP + LPGITR +II +A
Sbjct: 172 SEARRHGYQEGIALDV--NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLA 229
Query: 177 QSQGFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLY 236
+ G + ADEVF +GTA ++PV S+ + GEG G V++++
Sbjct: 230 KELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV----DGIQVGEGRCGPVTKRIQ 285
Query: 237 SVLTQLQMGLIADKMNW 253
L G DK W
Sbjct: 286 QAFFGLFTGETEDKWGW 302
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 106/251 (42%), Gaps = 23/251 (9%)
Query: 9 RMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLI 68
RM +P + E+ EA+K V N G S YIRPL LG+ P P +
Sbjct: 68 RMEIPF-APEELEEAIKEVVRRN-------GYRSCYIRPLAWMGAKALGVNPLPNNPAEV 119
Query: 69 YVSPV--GNYF-KEGIAPINLVVEHELHRATPGGT--GGVKTIGNYXXXXXXXXXXXXXG 123
V+ G Y +E + ++ R P G K GNY G
Sbjct: 120 MVAAWEWGAYLGEEAVRKGARLITSSWAR-FPANVMPGKAKVGGNYVNSALAKMEAVAAG 178
Query: 124 YSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTI-LPGITRKSIIDVAQSQGFQ 182
+ L LD + Y+ E S N+F V+ VI A++ ++ L GITR S+I +A+ G++
Sbjct: 179 ADEALLLD--EEGYVAEGSGENLFFVRDGVIY--ALEHSVNLEGITRDSVIRIAKDLGYE 234
Query: 183 XXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQL 242
ADEVF TGTA V+PV I + G+G G V+ +L V +
Sbjct: 235 VQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWR----PIGKGTAGPVALRLREVYLEA 290
Query: 243 QMGLIADKMNW 253
G + W
Sbjct: 291 VTGRRPEYEGW 301
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 101/255 (39%), Gaps = 16/255 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGL-AP 60
R+ A+ M P ++ +EA + V+ + S Y+RP++ LG+ A
Sbjct: 83 RLLNSAKIFQMDVPFDQETLEAAQRDVVRENK------LESCYLRPIIWIGSEKLGVSAK 136
Query: 61 APEYTFLIYVSPVGNYF-KEGIAP-INLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXX 118
I P G Y +EG+A I + K G Y
Sbjct: 137 GNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQE 196
Query: 119 XXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQS 178
GY + L LD Y+ E S N F+V + TP + + L GITR ++I +A+
Sbjct: 197 ATADGYDEALLLDV--DGYVSEGSGENFFLVNRGKLYTPDL-ASCLDGITRDTVITLAKE 253
Query: 179 QGFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSV 238
G + ADE F TGTA V+P I L R + G G G ++++L S
Sbjct: 254 AGIEVIEKRITRDEVYTADEAFFTGTAAEVTP---IRELDNR-TIGGGARGPITEKLQSA 309
Query: 239 LTQLQMGLIADKMNW 253
+ G A +W
Sbjct: 310 FFDVVNGKSAKHADW 324
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 40 KGSLY---IRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRAT 96
K +LY I+ +L G A GLA + + LI+ + NY + P+ L+ + L R
Sbjct: 78 KDNLYHGGIKAILSGGPASRGLAERGQVSQLIFQT--FNYSIQK-HPVRLISINWL-RDK 133
Query: 97 PGGTGGVKTIGNYXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156
+ ++ NY G D L+ + + ++ E + N+F+++ N++ T
Sbjct: 134 ANPLYQLXSV-NYLEAIIAQRQAIAVGADDALFFNT--ENHVTETTCANLFLIENNILYT 190
Query: 157 PAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFCTGT 204
P ++ ILPGITR +I Q DAD VF T +
Sbjct: 191 PRVEDGILPGITRARLISHCQQHKXSVQEISLTKKRIEDADAVFLTNS 238
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E S N+F+VK + TP++ IL GITR+++I +A+S +ADE
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 200 FCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQLQMGLIADKMNW 253
F T T+ V PV + S+ E G V+ L + L + NW
Sbjct: 236 FLTHTSAGVVPVRRLN----EHSFFEEEPGPVTATLXENFEPFVLNL---EENW 282
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 123 GYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 182
G+ DV++ D R LE +S + KG+ I TP+ G ILPG T+ ++ A +G++
Sbjct: 204 GFDDVIFTDG--DRVLEGATST-VVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWR 260
Query: 183 XXXXXXXXXXXXDADEVF 200
AD V+
Sbjct: 261 CKEKDLSIDDLFGADSVW 278
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E SS N+F +K ++ T IL GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 200 FCTGTAVVVSPVGSITYLGKRVSYGEGG 227
F T T ++PV I GK + G+ G
Sbjct: 237 FVTSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E SS N+F +K ++ T IL GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 200 FCTGTAVVVSPVGSITYLGKRVSYGEGG 227
F T T ++PV I GK + G+ G
Sbjct: 237 FVTSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E SS N+F +K ++ T IL GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 200 FCTGTAVVVSPVGSITYLGKRVSYGEGG 227
F T T ++PV I GK + G+ G
Sbjct: 237 FVTSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 142 SSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFC 201
SS N+F +K ++ T IL GITR +I A DE+F
Sbjct: 179 SSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFV 238
Query: 202 TGTAVVVSPVGSITYLGKRVSYGEGG 227
T T ++PV I GK + G+ G
Sbjct: 239 TSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 142 SSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFC 201
SS N+F +K ++ T IL GITR +I A DE+F
Sbjct: 179 SSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFV 238
Query: 202 TGTAVVVSPVGSITYLGKRVSYGEGG 227
T T ++PV I GK + G+ G
Sbjct: 239 TSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 137 YLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDA 196
++ E + N+F KGNV+ TP + + GI R+ I + +Q A
Sbjct: 170 WVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQA 229
Query: 197 DEVFCTGTAVVVSPV 211
DE+ + V PV
Sbjct: 230 DEMVICNALMPVMPV 244
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E SS N+F +K ++ T I GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 200 FCTGTAVVVSPVGSITYLGKRVSYGEGG 227
F T T ++PV I GK + G+ G
Sbjct: 237 FVTSTTSEITPVIEID--GKLIRDGKVG 262
>pdb|1P8A|A Chain A, Solution Structure Of The Low Molecular Weight Protein
Tyrosine Phosphatase From Tritrichomonas Foetus
Length = 146
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 146 IFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 182
+FV GN+ +PA +G + K IID A + GF
Sbjct: 8 LFVCLGNICRSPACEGICRDMVGDKLIIDSAATSGFH 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,132,337
Number of Sequences: 62578
Number of extensions: 278130
Number of successful extensions: 565
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 34
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)