Query 025084
Match_columns 258
No_of_seqs 122 out of 1274
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:33:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02782 Branched-chain amino 100.0 4.9E-55 1.1E-59 400.6 33.3 258 1-258 146-403 (403)
2 PLN02259 branched-chain-amino- 100.0 5.2E-54 1.1E-58 392.1 32.2 257 1-258 132-388 (388)
3 PLN02883 Branched-chain amino 100.0 1.3E-53 2.7E-58 388.8 31.7 257 1-258 128-384 (384)
4 PLN03117 Branched-chain-amino- 100.0 1.3E-51 2.8E-56 374.0 32.7 255 1-257 96-350 (355)
5 TIGR01123 ilvE_II branched-cha 100.0 1.1E-50 2.3E-55 363.3 32.0 255 1-257 51-313 (313)
6 TIGR01122 ilvE_I branched-chai 100.0 3.9E-50 8.4E-55 357.4 30.5 243 1-257 50-298 (298)
7 PRK13357 branched-chain amino 100.0 1.2E-49 2.6E-54 361.6 31.7 257 1-257 92-355 (356)
8 PRK06606 branched-chain amino 100.0 2.6E-49 5.6E-54 353.3 30.1 243 1-257 59-306 (306)
9 KOG0975 Branched chain aminotr 100.0 5.9E-50 1.3E-54 352.3 24.8 254 1-256 120-379 (379)
10 cd01557 BCAT_beta_family BCAT_ 100.0 2.6E-48 5.6E-53 342.6 30.4 240 1-245 39-279 (279)
11 PRK12479 branched-chain amino 100.0 3.1E-46 6.7E-51 332.5 28.6 228 1-246 52-287 (299)
12 PRK08320 branched-chain amino 100.0 2E-45 4.3E-50 325.7 29.4 227 1-245 51-285 (288)
13 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 3E-45 6.5E-50 319.0 28.3 224 1-239 29-256 (256)
14 PRK13356 aminotransferase; Pro 100.0 4.1E-45 9E-50 323.4 29.4 226 1-245 55-284 (286)
15 PRK07650 4-amino-4-deoxychoris 100.0 6.2E-45 1.3E-49 321.8 29.1 226 1-245 48-277 (283)
16 PRK07544 branched-chain amino 100.0 6E-45 1.3E-49 323.2 27.9 228 1-246 57-289 (292)
17 PRK12400 D-amino acid aminotra 100.0 9.2E-45 2E-49 321.7 28.6 224 1-245 55-284 (290)
18 PLN02845 Branched-chain-amino- 100.0 4.4E-44 9.4E-49 322.8 29.0 228 1-246 89-325 (336)
19 cd01559 ADCL_like ADCL_like: 4 100.0 1.9E-44 4.2E-49 313.1 25.5 218 1-239 29-249 (249)
20 cd01558 D-AAT_like D-Alanine a 100.0 8.4E-44 1.8E-48 312.5 27.8 218 1-239 46-270 (270)
21 PRK06680 D-amino acid aminotra 100.0 1.7E-43 3.7E-48 313.0 29.2 223 1-245 51-283 (286)
22 COG0115 IlvE Branched-chain am 100.0 3.2E-43 6.9E-48 311.0 28.1 230 1-246 50-283 (284)
23 TIGR01121 D_amino_aminoT D-ami 100.0 5.6E-43 1.2E-47 308.3 28.7 220 1-242 48-274 (276)
24 PRK07849 4-amino-4-deoxychoris 100.0 8.1E-43 1.7E-47 309.4 28.6 223 1-243 60-288 (292)
25 PRK06092 4-amino-4-deoxychoris 100.0 6.5E-43 1.4E-47 306.6 26.9 221 1-241 44-267 (268)
26 TIGR03461 pabC_Proteo aminodeo 100.0 1E-42 2.2E-47 304.2 26.0 216 1-236 42-260 (261)
27 PRK09266 hypothetical protein; 100.0 1.3E-41 2.8E-46 298.1 25.4 214 1-241 46-260 (266)
28 PF01063 Aminotran_4: Aminotra 100.0 1.1E-41 2.3E-46 292.0 22.6 219 1-239 8-231 (231)
29 PRK07546 hypothetical protein; 100.0 2.3E-36 5E-41 256.0 21.8 183 1-214 26-209 (209)
30 PRK07101 hypothetical protein; 99.9 1.2E-26 2.5E-31 193.3 18.2 162 1-208 24-187 (187)
31 PF15507 DUF4649: Domain of un 71.1 5.6 0.00012 27.6 3.1 54 184-238 11-66 (72)
32 TIGR00829 FRU PTS system, fruc 53.0 28 0.00061 24.9 4.2 33 173-205 21-62 (85)
33 cd05569 PTS_IIB_fructose PTS_I 50.4 32 0.0007 25.0 4.3 37 170-206 19-64 (96)
34 PRK10474 putative PTS system f 49.4 33 0.00072 24.6 4.1 36 170-205 4-48 (88)
35 KOG3442 Uncharacterized conser 43.6 50 0.0011 25.5 4.3 40 3-46 58-98 (132)
36 cd03079 GST_N_Metaxin2 GST_N f 42.2 74 0.0016 22.1 4.8 58 153-221 2-61 (74)
37 COG1445 FrwB Phosphotransferas 37.6 83 0.0018 24.2 4.8 37 169-205 21-66 (122)
38 PRK10427 putative PTS system f 34.7 72 0.0016 24.2 4.1 34 172-205 25-67 (114)
39 PF02037 SAP: SAP domain; Int 34.2 87 0.0019 18.2 3.6 25 3-27 9-34 (35)
40 PF14894 Lsm_C: Lsm C-terminal 32.1 48 0.001 22.5 2.4 18 228-245 44-61 (64)
41 COG2257 Uncharacterized homolo 26.4 43 0.00094 24.3 1.5 32 165-196 30-61 (92)
42 cd01712 ThiI ThiI is required 25.0 1E+02 0.0022 24.7 3.7 65 114-186 94-161 (177)
43 PRK06683 hypothetical protein; 24.7 1.1E+02 0.0024 21.6 3.4 28 168-196 41-68 (82)
44 PF09778 Guanylate_cyc_2: Guan 24.5 91 0.002 26.5 3.3 28 168-195 91-118 (212)
45 PF13051 DUF3912: Protein of u 23.0 77 0.0017 21.0 2.1 38 143-180 31-68 (68)
46 COG1935 Uncharacterized conser 22.9 94 0.002 23.7 2.8 43 163-206 5-52 (122)
47 PF04322 DUF473: Protein of un 22.8 90 0.0019 24.0 2.7 61 163-223 5-78 (119)
48 cd03057 GST_N_Beta GST_N famil 21.9 82 0.0018 21.1 2.3 64 171-239 13-76 (77)
49 cd03041 GST_N_2GST_N GST_N fam 21.8 1.5E+02 0.0032 20.0 3.6 63 170-238 14-76 (77)
50 PRK13602 putative ribosomal pr 21.4 1.4E+02 0.003 21.1 3.4 29 167-196 40-68 (82)
51 cd03059 GST_N_SspA GST_N famil 20.8 1.3E+02 0.0029 19.6 3.1 60 170-238 13-72 (73)
52 KOG2708 Predicted metalloprote 20.6 52 0.0011 28.5 1.2 38 152-193 30-71 (336)
No 1
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=4.9e-55 Score=400.61 Aligned_cols=258 Identities=90% Similarity=1.386 Sum_probs=238.8
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||.+||++|+||.++.++|.+++.+++++|+.|+|+...+.+|||++++|+++.+|+.+...++++|++.|.+.++..|
T Consensus 146 ~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~~~~g 225 (403)
T PLN02782 146 IRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 225 (403)
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECccccccC
Confidence 59999999999998899999999999999999999876667899999898887778888777789999999988777778
Q ss_pred cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEccCCC
Q 025084 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIK 160 (258)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP~~~ 160 (258)
.+++++.+..++.|..|..++++|+++||+.+++++++|+++|+||+||+|...+|+|+|++++|+|++++++|+||+++
T Consensus 226 ~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~ 305 (403)
T PLN02782 226 VAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIK 305 (403)
T ss_pred CccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEcCCCc
Confidence 77888888666889988889999998899999999999999999999999942279999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHHHH
Q 025084 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLT 240 (258)
Q Consensus 161 ~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~~~ 240 (258)
.+||+||||+.||++|+++|++|+|++++++||.+|||+|+|||+.+|+||++|+++|+.+.+++|.+||++++|++.|.
T Consensus 306 ~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~g~~~~~~~g~~Gpvt~~L~~~l~ 385 (403)
T PLN02782 306 GTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLT 385 (403)
T ss_pred CCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEEEEEEEECCEEEeCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999887788889999999999999
Q ss_pred HhHhcCCCCCCCCeeeCC
Q 025084 241 QLQMGLIADKMNWTLELS 258 (258)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~ 258 (258)
+++.|+.+|..+|+..|+
T Consensus 386 ~iq~G~~~~~~~W~~~v~ 403 (403)
T PLN02782 386 SLQMGLIEDNMNWTVELS 403 (403)
T ss_pred HHhcCCCCCCCCCeEECC
Confidence 999999999999999986
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=5.2e-54 Score=392.11 Aligned_cols=257 Identities=67% Similarity=1.115 Sum_probs=233.9
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||++||++|+||.|+.++|.+.+.+++++|+.|+|+...+.+|||++++|+++.+|+.|...++++|++.|.++++..|
T Consensus 132 ~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g 211 (388)
T PLN02259 132 IRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEG 211 (388)
T ss_pred HHHHHhHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcC
Confidence 59999999999999899999999999999999999876666899999888877678888766789999999988777778
Q ss_pred cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEccCCC
Q 025084 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIK 160 (258)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP~~~ 160 (258)
++++++.+..++.|..|..++++|+++||+++++++++|+++||||+|++|...+|+|+|++++|+|++++++|+||+++
T Consensus 212 ~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~ 291 (388)
T PLN02259 212 MAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATN 291 (388)
T ss_pred cceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEcCCCc
Confidence 77777777666889888888999998899999999999999999999999953379999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHHHH
Q 025084 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLT 240 (258)
Q Consensus 161 ~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~~~ 240 (258)
.+|||||||+.|+++|++.|++|+|++++++||.+|||+|+|||+.+|+||++|+++|+.+.++.+ .|+++++|+++|.
T Consensus 292 ~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~~~~~~~~~~-~g~~t~~L~~~l~ 370 (388)
T PLN02259 292 GTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYKTG-DESVCQKLRSVLV 370 (388)
T ss_pred CCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcceEEEEEEEecCCceEEeCCC-CCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876677555554 5899999999999
Q ss_pred HhHhcCCCCCCCCeeeCC
Q 025084 241 QLQMGLIADKMNWTLELS 258 (258)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~ 258 (258)
+++.|+.+|..+|+.+|.
T Consensus 371 ~iq~G~~~~~~~W~~~~~ 388 (388)
T PLN02259 371 GIQTGLIEDNKGWVTDIN 388 (388)
T ss_pred HHHcCCCCCCCCCeEECC
Confidence 999999999999999873
No 3
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.3e-53 Score=388.77 Aligned_cols=257 Identities=62% Similarity=0.993 Sum_probs=231.6
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||.+||++|+||.++.++|.+++.++++.|+.|+|+.+.+.+|||++++++++.+|+.+...++++|++.|.+.++..|
T Consensus 128 ~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g 207 (384)
T PLN02883 128 MRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEG 207 (384)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccC
Confidence 49999999999999899999999999999999999876666899999999887778888777789999999998877778
Q ss_pred cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEccCCC
Q 025084 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIK 160 (258)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP~~~ 160 (258)
++++++.+...+.|..+..++++|+++||+++++++++|+++||||+||+|.+++|+|+|++++|||++++++|+||+++
T Consensus 208 ~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l~ 287 (384)
T PLN02883 208 TAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATS 287 (384)
T ss_pred cceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCc
Confidence 77888877666678888889999999899999999999999999999999962237999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHHHH
Q 025084 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLT 240 (258)
Q Consensus 161 ~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~~~ 240 (258)
.+|||||||+.|+++|+++|++|+|++++++||.+|||+|+|||+.+|+||++|++.+..+.+.-+ .|+++++|++.|.
T Consensus 288 ~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~I~~~~~~~~~~~~-~G~vt~~L~~~l~ 366 (384)
T PLN02883 288 GTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVG-DGIVTQQLRSILL 366 (384)
T ss_pred CCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheEEEEEEeccCceeecccC-CCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999766554322222 3899999999999
Q ss_pred HhHhcCCCCCCCCeeeCC
Q 025084 241 QLQMGLIADKMNWTLELS 258 (258)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~ 258 (258)
+++.|+.+|..+|+.+|.
T Consensus 367 ~iq~G~~~d~~~W~~~~~ 384 (384)
T PLN02883 367 GIQTGSIQDTKDWVLQIA 384 (384)
T ss_pred HHHcCCCCCCCCCeEeCC
Confidence 999999999999999873
No 4
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=1.3e-51 Score=374.04 Aligned_cols=255 Identities=60% Similarity=1.041 Sum_probs=222.9
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||++||++|+|+.|+.++|++.+.+++++|+.++++.+.+.+|+|++++|+++.+|+.+.+.+.+++++.|.+.++. .
T Consensus 96 ~RL~~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~-~ 174 (355)
T PLN03117 96 LRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHK-A 174 (355)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEecccccc-C
Confidence 599999999999998999999999999999987766555567899998877766677776556788888888764432 1
Q ss_pred cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEccCCC
Q 025084 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIK 160 (258)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP~~~ 160 (258)
.+++++.+.+.+.|..+..++++|+++||+.+++++++|+++|+||+|++|..++|+|+|++++|||+++|++|+||+++
T Consensus 175 ~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~TP~l~ 254 (355)
T PLN03117 175 SSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTS 254 (355)
T ss_pred CCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCc
Confidence 24566666544677777778999996689999999999999999999999962136999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHHHH
Q 025084 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLT 240 (258)
Q Consensus 161 ~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~~~ 240 (258)
.+||+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||..+|+||.+|++.++.+.++++. ||+|++|+++|.
T Consensus 255 ~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~~i~~~~~~~~~~~~~-~~~~~~l~~~~~ 333 (355)
T PLN03117 255 GTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKYRTGE-EALSTKLHLILT 333 (355)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEccCcceEEEEEEEEecCceEEeCCCC-ChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998766666667765 899999999999
Q ss_pred HhHhcCCCCCCCCeeeC
Q 025084 241 QLQMGLIADKMNWTLEL 257 (258)
Q Consensus 241 ~~~~~~~~~~~~~~~~~ 257 (258)
++|+|..+|+.+|+.+|
T Consensus 334 ~~~~g~~~~~~~W~~~v 350 (355)
T PLN03117 334 NIQMGVVEDKKGWMVEI 350 (355)
T ss_pred HHhCCCCCCCCCCEEEc
Confidence 99999999999999987
No 5
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=1.1e-50 Score=363.31 Aligned_cols=255 Identities=45% Similarity=0.811 Sum_probs=220.4
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCC-CCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS-GKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~-~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (258)
+||++||++|+|+.++.++|++.+.+++++|+.+++.. ..+.+|+|++++++++.+|+++.+.+++++++.|++.++..
T Consensus 51 ~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 130 (313)
T TIGR01123 51 ARLRRSARRLLMPELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKG 130 (313)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccc
Confidence 59999999999997799999999999999987543221 13467999988877666787765568888888887655555
Q ss_pred CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCce--EEEcCceeEEEEEC-CEEEc
Q 025084 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRY--LEEVSSCNIFVVKG-NVIST 156 (258)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~--v~E~t~sNvf~~~~-g~l~T 156 (258)
|..++++.+...+.|..+..++++||..||+.+++|++||+++|+||+||+|+ +|+ |+|++++|+|++++ |+|+|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~g~deal~ld~--~g~g~v~E~~~sNlf~v~~~g~l~T 208 (313)
T TIGR01123 131 GLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDP--VEHTYIEEVGAMNFFFITGDGELVT 208 (313)
T ss_pred cccceeEEecccceecCCCCCccceeccccHHHHHHHHHHHHCCCCEEEEEeC--CCCeEEEEcCcEeEEEEEcCCEEEe
Confidence 65555555434567777776899999448999999999999999999999997 655 99999999999985 79999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcc----cEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHH
Q 025084 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDA----DEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVS 232 (258)
Q Consensus 157 P~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~a----devfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~ 232 (258)
||++.++|+||||+.|+++|+++|++|+|++++++||.+| ||+|+|||++||+||++|++|++.+.+++|++||++
T Consensus 209 p~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~devfltnS~~gi~PV~~i~~d~~~~~~~~g~~g~~~ 288 (313)
T TIGR01123 209 PPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVT 288 (313)
T ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEecCHHHHHHHHhcCCEEEEccCceEEEEEEEEEECCeEEEcCCCCCChHH
Confidence 9999999999999999999999999999999999999999 999999999999999999767877556888899999
Q ss_pred HHHHHHHHHhHhcCCCCCCCCeeeC
Q 025084 233 QQLYSVLTQLQMGLIADKMNWTLEL 257 (258)
Q Consensus 233 ~~L~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
++|+++|.++++|+.+++.+|+.+|
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~w~~~~ 313 (313)
T TIGR01123 289 KALYDELTDIQYGDFEDPYGWIVEV 313 (313)
T ss_pred HHHHHHHHHHhcCCCCCCCCCeeeC
Confidence 9999999999999888999999876
No 6
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=3.9e-50 Score=357.43 Aligned_cols=243 Identities=35% Similarity=0.553 Sum_probs=211.7
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (258)
+||.+||+.|+|+.| +.++|.+.+.+++++|+. ...|||++++++.+.+|+.+. ..|++++++.|++.++
T Consensus 50 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~ 122 (298)
T TIGR01122 50 QRLYDSAKIYRMEIPYSKEELMEATRETLRKNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYL 122 (298)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEecccccc
Confidence 599999999999987 899999999999998863 357999988776666777653 2678888888875432
Q ss_pred cCC--cccEEEEeecceeecCCCCC-CCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEE
Q 025084 78 KEG--IAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVI 154 (258)
Q Consensus 78 ~~g--~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l 154 (258)
... .+++++.+. ++.|..+..+ +++||+|||+.++++.++|+++|+||+||+|+ +|+|+|+++||||++++|+|
T Consensus 123 ~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K~~~~yl~~v~a~~~a~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l 199 (298)
T TIGR01122 123 GEEALEKGIDAKVS-SWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSGENIFIVKDGVL 199 (298)
T ss_pred CcccccCCeEEEEE-EEEcCCCCCcCccchhhhhhHHHHHHHHHHHHcCCCEEEEECC--CCCEEECCceEEEEEECCEE
Confidence 110 135666664 3567666654 89999866999999999999999999999997 89999999999999999999
Q ss_pred EccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHH
Q 025084 155 STPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQ 234 (258)
Q Consensus 155 ~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~ 234 (258)
+||+++.++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||++||+||++| |++.+ ++|++||++++
T Consensus 200 ~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~--~~~~~g~~~~~ 275 (298)
T TIGR01122 200 FTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREV--DGRKI--GNGRRGPVTKK 275 (298)
T ss_pred ECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEE--CCEEC--CCCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 67765 88889999999
Q ss_pred HHHHHHHhHhcCCCCCCCCeeeC
Q 025084 235 LYSVLTQLQMGLIADKMNWTLEL 257 (258)
Q Consensus 235 L~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
|+++|.+.++++..|+++|+.+|
T Consensus 276 l~~~~~~~~~~~~~~~~~w~~~~ 298 (298)
T TIGR01122 276 LQEAFFDLVTGGTEDYWGWLTYV 298 (298)
T ss_pred HHHHHHHHHcCCCCCcCCCceeC
Confidence 99999999999888999999765
No 7
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=1.2e-49 Score=361.63 Aligned_cols=257 Identities=45% Similarity=0.800 Sum_probs=219.9
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCC-CCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPP-SGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~-~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (258)
+||.+||+.|+|+.++.++|++.+.+++++|+.+.++ ...+.+|+|++++++.+.+|+++...+++++++.|++.++..
T Consensus 92 ~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~ 171 (356)
T PRK13357 92 KRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKG 171 (356)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEechhhccc
Confidence 5999999999998668999999999999998753311 123468999988776666777655568899998887765544
Q ss_pred CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEccCC
Q 025084 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAI 159 (258)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP~~ 159 (258)
+.+++++.+...+.|..++.++++||..||+.+++|++||+++|+||+||+|+..+|+|+|+++|||||+++++++|||+
T Consensus 172 ~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~l~TPpl 251 (356)
T PRK13357 172 GVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPL 251 (356)
T ss_pred CCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECCEEEECCC
Confidence 55667766654577888887899999448999999999999999999999984126999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHCCCeEEEEecCHHH------HhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHH
Q 025084 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEE------LLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQ 233 (258)
Q Consensus 160 ~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~e------L~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~ 233 (258)
+.+||+||||+.|+++|+++|++++|++++++| |.+|||+|+|||+.||+||++|++++....+++|++||+++
T Consensus 252 ~~giL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~AdevFltnS~~gi~PV~~id~~~~~~~~~~g~~g~~t~ 331 (356)
T PRK13357 252 SGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKEFVIGDGEVGPVTQ 331 (356)
T ss_pred CCCCCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcceEEEEcccccEEEEEEEEEeCCCEEEcCCCCCChHHH
Confidence 999999999999999999999999999999999 89999999999999999999996443333447788999999
Q ss_pred HHHHHHHHhHhcCCCCCCCCeeeC
Q 025084 234 QLYSVLTQLQMGLIADKMNWTLEL 257 (258)
Q Consensus 234 ~L~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
+|+++|.+.++|+.+++.+|+.+|
T Consensus 332 ~L~~~~~~~~~~~~~~~~~w~~~~ 355 (356)
T PRK13357 332 KLYDELTGIQFGDVEDPHGWIVKV 355 (356)
T ss_pred HHHHHHHHHhcCCCCCCCCCcEeC
Confidence 999999999999888989999876
No 8
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=2.6e-49 Score=353.32 Aligned_cols=243 Identities=34% Similarity=0.549 Sum_probs=211.3
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCC-CeEEEEEEEecCcccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAP-EYTFLIYVSPVGNYFK 78 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~-~~~~~i~~~p~~~~~~ 78 (258)
+||++||+.|+|+.| +.++|.+.+.+++++|+. ...|||++++++.+.+|+.+.. .+++++++.|++.++.
T Consensus 59 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~ 131 (306)
T PRK06606 59 KRLFNSAKILRMEIPYSVDELMEAQREVVRKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLG 131 (306)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccC
Confidence 599999999999987 789999999999999863 3579999888766667776543 5678888888654331
Q ss_pred -CCc-ccEEEEeecceeecCCCC-CCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEE
Q 025084 79 -EGI-APINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS 155 (258)
Q Consensus 79 -~g~-~~~~l~~~~~~~r~~~~~-~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~ 155 (258)
.+. +++++.+. ++.|..+.. ++++|++.||+.+++++++|+++|+||+||+|+ +|+|+|++++||||+++|+|+
T Consensus 132 ~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~G~de~l~l~~--~g~v~E~~~sNlf~v~~~~l~ 208 (306)
T PRK06606 132 EEALEKGIRVKVS-SWTRHAPNSIPTRAKASGNYLNSILAKTEARRNGYDEALLLDV--EGYVSEGSGENIFIVRDGVLY 208 (306)
T ss_pred cccccCCeEEEEe-eEecCCCCCcCcchhhhhccHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEE
Confidence 111 35666654 356666655 578997569999999999999999999999998 899999999999999999999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHH
Q 025084 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQL 235 (258)
Q Consensus 156 TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L 235 (258)
||+++.++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||++||+||++| |++.+ ++|++|+++++|
T Consensus 209 TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~i--d~~~~--~~g~~g~~~~~L 284 (306)
T PRK06606 209 TPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREV--DGRQI--GNGKRGPITEKL 284 (306)
T ss_pred CCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEE--CcEEC--CCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 68876 788899999999
Q ss_pred HHHHHHhHhcCCCCCCCCeeeC
Q 025084 236 YSVLTQLQMGLIADKMNWTLEL 257 (258)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
+++|.+.+.++..|+.+|++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
T PRK06606 285 QSAYFDIVRGRTEKYAHWLTPV 306 (306)
T ss_pred HHHHHHHHcCCCCCCCCCcccC
Confidence 9999999999889999999875
No 9
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-50 Score=352.33 Aligned_cols=254 Identities=58% Similarity=0.937 Sum_probs=239.9
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||++||.++.||.|+.+++.++|.+++.+++.|+|+.+.+.+|||+++.|++..+|..+.+.++++++++|...|+..|
T Consensus 120 ~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~g 199 (379)
T KOG0975|consen 120 DRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYFKSG 199 (379)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchhcccc
Confidence 59999999999999999999999999999999999998899999999999999889999988999999999999999999
Q ss_pred cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCE--EEccC
Q 025084 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV--ISTPA 158 (258)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~--l~TP~ 158 (258)
.+++.|.+.+.++|..|...++.|+++||+++++++.||+++||+|+||+|. .+++|+|..+.|||++++++ +.||+
T Consensus 200 ~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~-d~~~ItEv~tmNiF~v~~n~~elvTPp 278 (379)
T KOG0975|consen 200 FKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDG-DGGYITEVGTMNIFMVKKNEDELVTPP 278 (379)
T ss_pred ccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEec-CCCceeeccceeEEEEEcCceeEecCC
Confidence 9999999988899999999999999999999999999999999999999997 23499999999999999998 99999
Q ss_pred CCCCCCCCchHHHHHHHHHHCC-CeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECC---eEEEcCCCCccHHHHH
Q 025084 159 IKGTILPGITRKSIIDVAQSQG-FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLG---KRVSYGEGGFGAVSQQ 234 (258)
Q Consensus 159 ~~~~iL~Gitr~~ll~~~~~~g-~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~---~~i~~~~g~~g~~~~~ 234 (258)
++..|||||||+.++++|+++| +.|+||.++++|+.+|+|+|.|+|...|.||..|.|.| +...+++|+.||++++
T Consensus 279 ~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i~~~~~~i~~~~~~~g~~g~l~~~ 358 (379)
T KOG0975|consen 279 LDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAAVVSPVGSILYKDEKIHIPTIGEGKEGPLAKK 358 (379)
T ss_pred CCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhcccceeeeccccceeecccccceeecCCCCccHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999999988 3334688999999999
Q ss_pred HHHHHHHhHhcCCCCCCCCeee
Q 025084 235 LYSVLTQLQMGLIADKMNWTLE 256 (258)
Q Consensus 235 L~~~~~~~~~~~~~~~~~~~~~ 256 (258)
|++.+.++++|. .+..+|+.+
T Consensus 359 l~~~l~~iq~g~-~~~~~w~~~ 379 (379)
T KOG0975|consen 359 LLSTLTDIQYGR-EPKKGWTVP 379 (379)
T ss_pred HHHHHHHhhcCC-cCCCCcccC
Confidence 999999999999 777999863
No 10
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=2.6e-48 Score=342.62 Aligned_cols=240 Identities=48% Similarity=0.815 Sum_probs=206.1
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||.+||+.|+|+.++.++|.+.+.+++++|+.|+|..+..+.|||++++++.+.+|+.+...|++++++.|+++++...
T Consensus 39 ~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 118 (279)
T cd01557 39 ERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGG 118 (279)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCEEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCC
Confidence 59999999999995499999999999999997765544445689999888776667776555678888888876554322
Q ss_pred cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCC-ceEEEcCceeEEEEECCEEEccCC
Q 025084 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHK-RYLEEVSSCNIFVVKGNVISTPAI 159 (258)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~-g~v~E~t~sNvf~~~~g~l~TP~~ 159 (258)
..++++.+. ++.|..+...+.+|++.||+.+++++++|+++|+||+||+|+ + |+|+|++++||||+++|+|+||++
T Consensus 119 ~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~g~de~l~ld~--~~g~v~E~~~sNlf~v~~~~l~TP~~ 195 (279)
T cd01557 119 EKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDG--AHGYVAEVGTMNIFFVKDGELITPPL 195 (279)
T ss_pred CCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHCCCCEEEEEcC--CCCEEEEeCcEEEEEEECCEEEcCCC
Confidence 245666654 466777755678997559999999999999999999999997 7 999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHHH
Q 025084 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVL 239 (258)
Q Consensus 160 ~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~~ 239 (258)
+.++|+||||+.++++|+++|++|+|++++++||.+|||+|+|||++||+||++| |++.+.++++++||++++|++.|
T Consensus 196 ~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i--~~~~~~~~~~~~gp~~~~l~~~~ 273 (279)
T cd01557 196 DGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEI--DYRGKEPGEGEVGPVTKKLYDLL 273 (279)
T ss_pred cCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEE--ccccccCCCCCCCHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999 57754336678999999999999
Q ss_pred HHhHhc
Q 025084 240 TQLQMG 245 (258)
Q Consensus 240 ~~~~~~ 245 (258)
.+.++|
T Consensus 274 ~~~~~~ 279 (279)
T cd01557 274 TDIQYG 279 (279)
T ss_pred HHHhcC
Confidence 998875
No 11
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=3.1e-46 Score=332.45 Aligned_cols=228 Identities=30% Similarity=0.436 Sum_probs=197.5
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCcc-
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNY- 76 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~- 76 (258)
+||++||+.|+|+.| +.+++.+.+.+++++++. ...|||++++++.+.+|+.+. ..|+++|++.|++.+
T Consensus 52 ~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~ 124 (299)
T PRK12479 52 KRLYESAKSILLTIPLTVDEMEEAVLQTLQKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFP 124 (299)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCC
Confidence 599999999999988 899999999999998763 356888888766666777654 367888888887532
Q ss_pred ---ccCCcccEEEEeecceeecCCCCC-CCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECC
Q 025084 77 ---FKEGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN 152 (258)
Q Consensus 77 ---~~~g~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g 152 (258)
+.+|+ ++.+. .+.|..++.+ +++||. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|
T Consensus 125 ~~~~~~gv---~~~~~-~~~r~~~~~~~~~~K~~-nyl~~vla~~ea~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~ 197 (299)
T PRK12479 125 QEFYDNGL---SVVSV-ASRRNTPDALDPRIKSM-NYLNNVLVKIEAAQAGVLEALMLNQ--QGYVCEGSGDNVFVVKDG 197 (299)
T ss_pred hhHHhCCe---EEEEE-eEeccCCCccCccchhh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECC
Confidence 23443 44443 3566666555 689997 9999999999999999999999997 899999999999999999
Q ss_pred EEEccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHH
Q 025084 153 VISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVS 232 (258)
Q Consensus 153 ~l~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~ 232 (258)
+|+||+++.++|+||||+.|+++++++|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ ++|++|+++
T Consensus 198 ~l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~i--d~~~~--~~~~~g~~~ 273 (299)
T PRK12479 198 KVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKV--DSREI--GDGKPGSVT 273 (299)
T ss_pred EEEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEEE--CCEEc--CCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 68876 788899999
Q ss_pred HHHHHHHHHhHhcC
Q 025084 233 QQLYSVLTQLQMGL 246 (258)
Q Consensus 233 ~~L~~~~~~~~~~~ 246 (258)
++|+++|.+.+++.
T Consensus 274 ~~l~~~~~~~~~~~ 287 (299)
T PRK12479 274 KQLTEEFKKLTRER 287 (299)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999877764
No 12
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2e-45 Score=325.67 Aligned_cols=227 Identities=32% Similarity=0.497 Sum_probs=194.0
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (258)
+||.+||+.|+|++| +.+++.+.+.+++++++. .+.+||++++++.+.+|+.+. ..|.+++++.|.+.+.
T Consensus 51 ~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (288)
T PRK08320 51 DRLYDSAKAIMLEIPLSKEEMTEIVLETLRKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYP 123 (288)
T ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCC
Confidence 599999999999887 899999999999998763 356888888776666777654 3567777777764322
Q ss_pred ----cCCcccEEEEeecceeecCCCCC-CCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECC
Q 025084 78 ----KEGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN 152 (258)
Q Consensus 78 ----~~g~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g 152 (258)
.+|++ +... .+.|..+..+ +++|++ ||+.+++++++|+++|+||+||+|+ +|+|+|+++||||++++|
T Consensus 124 ~~~~~~g~~---~~~~-~~~r~~~~~~~~~~K~~-nyl~~v~a~~~A~~~g~de~L~ld~--~g~v~E~s~sNlf~~~~~ 196 (288)
T PRK08320 124 GELYEKGLK---VITV-STRRNRPDALSPQVKSL-NYLNNILAKIEANLAGVDEAIMLND--EGYVAEGTGDNIFIVKNG 196 (288)
T ss_pred hhHHhcCeE---EEEE-eeeccCCCCcCccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCcEEEEEEECC
Confidence 34543 3333 2456655544 689997 8999999999999999999999998 899999999999999999
Q ss_pred EEEccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHH
Q 025084 153 VISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVS 232 (258)
Q Consensus 153 ~l~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~ 232 (258)
+|+||+++.++|+||||+.++++++++|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ ++|++|+++
T Consensus 197 ~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~gv~pV~~i--~~~~~--~~~~~g~~~ 272 (288)
T PRK08320 197 KLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFLTGTAAEVIPVVKV--DGRVI--GDGKPGPIT 272 (288)
T ss_pred EEECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHhCCEEEEecChhhEEEEEEE--CCEEC--CCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 67765 788899999
Q ss_pred HHHHHHHHHhHhc
Q 025084 233 QQLYSVLTQLQMG 245 (258)
Q Consensus 233 ~~L~~~~~~~~~~ 245 (258)
++|++.|.+.+..
T Consensus 273 ~~l~~~~~~~~~~ 285 (288)
T PRK08320 273 KKLLEEFRELTKK 285 (288)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999876654
No 13
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=3e-45 Score=318.99 Aligned_cols=224 Identities=43% Similarity=0.695 Sum_probs=190.1
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (258)
+||.+||+.|+|+.+ +.+++.+.+.+++++++. +..+||++++++.+.+|+.+. ..|++++++.|++.+.
T Consensus 29 ~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (256)
T cd00449 29 DRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYA 101 (256)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEEEEEEecccccCCCCCCCCCcEEEEEEeeccccc
Confidence 599999999999965 899999999999998653 457888888766556666533 4688888888876431
Q ss_pred cCCcccEEEEeecceeec-CCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEc
Q 025084 78 KEGIAPINLVVEHELHRA-TPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156 (258)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~-~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~T 156 (258)
.....++++.+.+. .|. .++.+.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|+||+++|+|+|
T Consensus 102 ~~~~~g~~~~~~~~-~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g~de~llld~--~g~v~E~s~sNlf~~~~~~l~T 177 (256)
T cd00449 102 KGGEKGVRLITSPD-RRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAGADEALLLDD--NGYVTEGSASNVFIVKDGELVT 177 (256)
T ss_pred cccCCCeEEEEeee-EEeCCCCCCccchhh-CCHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCceEEEEEECCEEEe
Confidence 11123455665543 343 45568899997 7899999999999999999999997 8999999999999999999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHH
Q 025084 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLY 236 (258)
Q Consensus 157 P~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~ 236 (258)
|+++.|+|+||||+.++++|+++|++++|+.++++||.+|||+|+|||++||+||++| |++.+ +.+++||++++|+
T Consensus 178 P~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i--~~~~~--~~~~~~~~~~~l~ 253 (256)
T cd00449 178 PPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEI--DGRGI--GDGKPGPVTRKLR 253 (256)
T ss_pred CCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEE--CCeec--CCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 67765 6678999999998
Q ss_pred HHH
Q 025084 237 SVL 239 (258)
Q Consensus 237 ~~~ 239 (258)
++|
T Consensus 254 ~~~ 256 (256)
T cd00449 254 ELL 256 (256)
T ss_pred HhC
Confidence 875
No 14
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=4.1e-45 Score=323.37 Aligned_cols=226 Identities=27% Similarity=0.394 Sum_probs=187.5
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCcc-CcCCC-CCeEEEEEEEecCccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVL-GLAPA-PEYTFLIYVSPVGNYF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~-g~~~~-~~~~~~i~~~p~~~~~ 77 (258)
+||.+||+.|+|+.| +.++|.+.+.+++++++. ..+.|||++++++.+.. |..+. ..+.+++...+.+...
T Consensus 55 ~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (286)
T PRK13356 55 ARVNRSAEALGLKPTVSAEEIEALAREGLKRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPE 128 (286)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCC
Confidence 599999999999876 899999999999998753 23578998886554333 34333 2344555555443222
Q ss_pred cCCcccEEEEeecceeecCCCCC-CCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEc
Q 025084 78 KEGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156 (258)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~T 156 (258)
. .++++.+. ++.|+.+..+ +++|+++||+.+++++++|+++|+||+||+|+ +|+|+|+++|||||+++|+|+|
T Consensus 129 ~---~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~g~deal~ld~--~G~v~E~~~sNlf~v~~~~l~T 202 (286)
T PRK13356 129 P---TGFSLTLS-PFRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDM--LGNVAETATSNVFMVKDGVVFT 202 (286)
T ss_pred C---CcEEEEEe-eeecCCCCCCCccceeccchHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEEc
Confidence 2 34556654 4566655443 67897779999999999999999999999997 8999999999999999999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHH
Q 025084 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLY 236 (258)
Q Consensus 157 P~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~ 236 (258)
|+++.++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||++||+||++| |++.+ + +||++++|+
T Consensus 203 P~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~i--d~~~~--~---~g~~~~~l~ 275 (286)
T PRK13356 203 PVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRF--DDRSL--Q---PGPVTRRAR 275 (286)
T ss_pred CCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEE--CCEEe--c---CChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 68876 3 589999999
Q ss_pred HHHHHhHhc
Q 025084 237 SVLTQLQMG 245 (258)
Q Consensus 237 ~~~~~~~~~ 245 (258)
++|.+.+++
T Consensus 276 ~~~~~~~~~ 284 (286)
T PRK13356 276 ELYWDWAHG 284 (286)
T ss_pred HHHHHHHhc
Confidence 999987765
No 15
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=6.2e-45 Score=321.80 Aligned_cols=226 Identities=25% Similarity=0.361 Sum_probs=193.1
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (258)
+||++||+.|+|+.+ +.+++.+.+.+++++++. .+.+||++++++.+.+++.+. ..|+++++..|+++..
T Consensus 48 ~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~ 120 (283)
T PRK07650 48 DRLNDALDTLQIEWTMTKDEVLLILKNLLEKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPG 120 (283)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCC
Confidence 599999999999987 899999999999988753 457899888766555666543 3678888888875322
Q ss_pred -cCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEc
Q 025084 78 -KEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156 (258)
Q Consensus 78 -~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~T 156 (258)
.....++.+ .+.|..++.++++|++ ||+.+++++++|++.|+||+||+|+ +|+|+|++++|||++++|+|+|
T Consensus 121 ~~~~~~~~~~----~~~~~~~~~~~~~Kt~-~y~~~v~a~~~a~~~g~de~llln~--~G~v~E~s~sNif~v~~g~l~T 193 (283)
T PRK07650 121 LPAEKEGVVL----KQRRNTPEGAFRLKSH-HYLNNILGKREIGNDPNKEGIFLTE--EGYVAEGIVSNLFWVKGDIVYT 193 (283)
T ss_pred hhhcCeEEEE----EEEecCCCCCcchhHH-hHHHHHHHHHHHHHcCCCeEEEECC--CCeEEEcCceEEEEEECCEEEc
Confidence 112222222 2445666668899997 9999999999999999999999997 8999999999999999999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHH
Q 025084 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLY 236 (258)
Q Consensus 157 P~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~ 236 (258)
|+++.|+|+||||+.++++|++.|++|+|+.++++||..|||+|+|||++|++||++| |++.+ + |++||++++|+
T Consensus 194 P~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i--~~~~~--~-g~~g~~~~~l~ 268 (283)
T PRK07650 194 PSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRI--EERDF--P-GKVGMVTKRLQ 268 (283)
T ss_pred CCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEE--CCEEe--C-CCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 68876 3 78999999999
Q ss_pred HHHHHhHhc
Q 025084 237 SVLTQLQMG 245 (258)
Q Consensus 237 ~~~~~~~~~ 245 (258)
++|.+.+..
T Consensus 269 ~~~~~~~~~ 277 (283)
T PRK07650 269 NLYEMQREK 277 (283)
T ss_pred HHHHHHHHh
Confidence 999887665
No 16
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=6e-45 Score=323.22 Aligned_cols=228 Identities=33% Similarity=0.477 Sum_probs=192.1
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCC-CeEEEEEEEecCccc-
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAP-EYTFLIYVSPVGNYF- 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~-~~~~~i~~~p~~~~~- 77 (258)
+||++||+.|+|+.| +.++|.+.+.++++.|+. .+.+||++++++.+.+|+.++. .+.+++...++++++
T Consensus 57 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~ 129 (292)
T PRK07544 57 ERLRRSAELLDFEIPYSVAEIDAAKKETLAANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFD 129 (292)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccC
Confidence 599999999999987 899999999999999863 3568998887766667766443 456666666655333
Q ss_pred -cCCcccEEEEeecceeecCCCCC-CCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEE
Q 025084 78 -KEGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS 155 (258)
Q Consensus 78 -~~g~~~~~l~~~~~~~r~~~~~~-~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~ 155 (258)
..+.+++++.+. .+.|..+..+ ..+|+.+||+.+++++++|+++|+||+||+|+ +|+|+|+++||+||++||+|+
T Consensus 130 ~~~~~~gv~l~~~-~~~r~~~~~~~~~~k~~~~yl~~vla~~~A~~~G~deal~ld~--~g~V~E~~~sNlf~v~~~~l~ 206 (292)
T PRK07544 130 PEAKMKGIRLDIA-KWRRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDY--RGYVAEATGANIFFVKDGVIH 206 (292)
T ss_pred ccccCCCEEEEEe-EEEcCCCCCcCHhhhhhcccHHHHHHHHHHHHcCCCeEEEECC--CCCEEEcCceEEEEEECCEEE
Confidence 222345666665 3566655544 46687778999999999999999999999998 899999999999999999999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHH
Q 025084 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQL 235 (258)
Q Consensus 156 TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L 235 (258)
||+++ ++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||++||+||++| |++.+ + +|+++++|
T Consensus 207 TP~~~-~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~~i--~~~~~--~---~g~~~~~l 278 (292)
T PRK07544 207 TPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEI--GEYRF--T---PGAITRDL 278 (292)
T ss_pred CCCCc-ccccchhHHHHHHHHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEEEE--eeEEe--C---CChHHHHH
Confidence 99985 59999999999999999999999999999999999999999999999999999 57765 3 68999999
Q ss_pred HHHHHHhHhcC
Q 025084 236 YSVLTQLQMGL 246 (258)
Q Consensus 236 ~~~~~~~~~~~ 246 (258)
+++|.+.++++
T Consensus 279 ~~~~~~~~~~~ 289 (292)
T PRK07544 279 MDDYEALVRPR 289 (292)
T ss_pred HHHHHHHHhcc
Confidence 99999888764
No 17
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=9.2e-45 Score=321.70 Aligned_cols=224 Identities=21% Similarity=0.313 Sum_probs=184.7
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCc--
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGN-- 75 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~-- 75 (258)
+||.+||+.|+|+.| +.+++.+.+.+++++|+. ....+||+.++++.+.+++.++ ..|++++++.+.+.
T Consensus 55 ~RL~~Sa~~L~i~~p~~~~~l~~~l~~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (290)
T PRK12400 55 TRLYRSMEEIELTLPFSKAELITLLYKLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPA 128 (290)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCch
Confidence 599999999999988 899999999999998862 1244677666554444555432 35677776655431
Q ss_pred -cccCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEE
Q 025084 76 -YFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVI 154 (258)
Q Consensus 76 -~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l 154 (258)
+...| +++...+ ..++.++++||+ ||+.+++++++|++.|+||+||+| +|+|+|++++|||+++||+|
T Consensus 129 ~~~~~g---~~~~~~~----~~~~~~~~~Kt~-nyl~~vla~~ea~~~g~deaL~l~---~g~v~E~t~sNif~v~~~~l 197 (290)
T PRK12400 129 LWIEYG---VRAISEP----DTRWLRCDIKSL-NLLPNILAATKAERKGCKEALFVR---NGTVTEGSHSNFFLIKNGTL 197 (290)
T ss_pred hHHhcC---cEEEECC----CCCccCCCCccc-ccHHHHHHHHHHHHcCCCEEEEEc---CCEEEEcCceEEEEEECCEE
Confidence 12334 3333321 123335789997 899999999999999999999995 79999999999999999999
Q ss_pred EccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHH
Q 025084 155 STPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQ 234 (258)
Q Consensus 155 ~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~ 234 (258)
+|||++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ ++|++||++++
T Consensus 198 ~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~~i--~~~~~--~~~~~g~~t~~ 273 (290)
T PRK12400 198 YTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMTHL--DGTAI--QDGQVGPITKM 273 (290)
T ss_pred EeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEEEE--CCEEC--CCCCcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 67765 88899999999
Q ss_pred HHHHHHHhHhc
Q 025084 235 LYSVLTQLQMG 245 (258)
Q Consensus 235 L~~~~~~~~~~ 245 (258)
|+++|.+.+..
T Consensus 274 l~~~~~~~~~~ 284 (290)
T PRK12400 274 LQRSFSQSLLQ 284 (290)
T ss_pred HHHHHHHHHHh
Confidence 99999886654
No 18
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=4.4e-44 Score=322.79 Aligned_cols=228 Identities=23% Similarity=0.300 Sum_probs=189.0
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (258)
+||++||+.|+|+.| +.++|.+.+.+++++|+. .+.+||++++.+.+.+++.+. ..|++++++.|.+...
T Consensus 89 ~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~ 161 (336)
T PLN02845 89 DRFLRSAAKAKIPLPFDRATLRRILLQTVAASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQ 161 (336)
T ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccc
Confidence 599999999999987 899999999999999863 345777777654444555433 3678888876654221
Q ss_pred cCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEE-CCEEEc
Q 025084 78 KEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK-GNVIST 156 (258)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~-~g~l~T 156 (258)
. ...++++.+.+ +.+ .+..++++||+ ||+.+++|+++|+++|+||+||+|+ +|+|+|+++|||||++ +|+|+|
T Consensus 162 ~-~~~gv~l~~~~-~~~-~~~~~~~~Kt~-nyl~~vla~~eA~~~G~deaLlln~--~G~V~Egt~sNiF~v~~~~~l~T 235 (336)
T PLN02845 162 D-RPEGVKVVTSS-VPI-KPPQFATVKSV-NYLPNALSQMEAEERGAFAGIWLDE--EGFVAEGPNMNVAFLTNDGELVL 235 (336)
T ss_pred c-ccCCeEEEEee-eee-cCCccccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCcceEEEEEECCEEEe
Confidence 1 11344555543 344 33346789997 8999999999999999999999998 8999999999999884 999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHC---C--CeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHH
Q 025084 157 PAIKGTILPGITRKSIIDVAQSQ---G--FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAV 231 (258)
Q Consensus 157 P~~~~~iL~Gitr~~ll~~~~~~---g--~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~ 231 (258)
|+++ ++|+||||+.|+++|+++ | ++|+|+.++++||.+|||+|+|||++||+||++| |++.+ ++|++||+
T Consensus 236 P~l~-~iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~i--d~~~~--~~g~~gp~ 310 (336)
T PLN02845 236 PPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSW--DGQPI--GDGKVGPI 310 (336)
T ss_pred CCCC-CcCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCEEEEecCcccEEEEEEE--CCEEC--CCCCCCHH
Confidence 9997 599999999999999986 8 8999999999999999999999999999999999 68866 88899999
Q ss_pred HHHHHHHHHHhHhcC
Q 025084 232 SQQLYSVLTQLQMGL 246 (258)
Q Consensus 232 ~~~L~~~~~~~~~~~ 246 (258)
+++|++.|.+.+++.
T Consensus 311 t~~L~~~~~~~~~~~ 325 (336)
T PLN02845 311 TLALHDLLLDDMRSG 325 (336)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887774
No 19
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=1.9e-44 Score=313.11 Aligned_cols=218 Identities=28% Similarity=0.468 Sum_probs=185.2
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCc-cc
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGN-YF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~-~~ 77 (258)
+||++||+.|+|+.++.+++++.+.+++++++. ...+||++++.+++..|+.+. ..|++++++.|.+. .+
T Consensus 29 ~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 101 (249)
T cd01559 29 ARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWR 101 (249)
T ss_pred HHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCHHHH
Confidence 599999999999944899999999999998763 356888888755444565443 36788888887653 22
Q ss_pred cCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEcc
Q 025084 78 KEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (258)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP 157 (258)
.+ ++++.+.+ +.|..++.+.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+||
T Consensus 102 ~~---gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~de~l~l~~--~g~v~E~~~~Nif~~~~~~~~TP 174 (249)
T cd01559 102 QD---GVRLITCP-VRLGEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDT--DGRVIEGTASNLFFVKDGELVTP 174 (249)
T ss_pred hC---CcEEEEcc-cccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCCEEEEEcC--CCCEEEecceEEEEEECCEEECC
Confidence 23 44555543 556566678999996 9999999999999999999999997 89999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHH
Q 025084 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYS 237 (258)
Q Consensus 158 ~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~ 237 (258)
+++.|+||||||+.++++++++|++++|+.++++||.+|||+|+|||++||+||++| |+ +.+++||++++|++
T Consensus 175 ~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~i--d~-----~~~~~~~~~~~l~~ 247 (249)
T cd01559 175 SLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAI--DD-----HDGPPGPLTRALRE 247 (249)
T ss_pred CcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCccceeEEEEE--CC-----cccCccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 44 23568999999998
Q ss_pred HH
Q 025084 238 VL 239 (258)
Q Consensus 238 ~~ 239 (258)
+|
T Consensus 248 ~~ 249 (249)
T cd01559 248 LL 249 (249)
T ss_pred hC
Confidence 76
No 20
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=8.4e-44 Score=312.47 Aligned_cols=218 Identities=33% Similarity=0.492 Sum_probs=182.3
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCcc-
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNY- 76 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~- 76 (258)
+||.+||+.|+|+.| +.+++++.+.+++++|+. .++.+|+++ ++|.+ .+++.+. ..+++++++.|++++
T Consensus 46 ~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~~~~~-t~g~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 118 (270)
T cd01558 46 DRLYRSAKELRIDIPYTREELKELIRELVAKNEG-----GEGDVYIQV-TRGVG-PRGHDFPKCVKPTVVIITQPLPLPP 118 (270)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-----CCceEEEEE-EeCCC-ccCCCCCCCCCCEEEEEEEecCCCC
Confidence 599999999999977 899999999999998753 245667775 34443 4555443 356788888777532
Q ss_pred ---ccCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCE
Q 025084 77 ---FKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV 153 (258)
Q Consensus 77 ---~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~ 153 (258)
++.| +++.+.+ ..|. ..+++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+
T Consensus 119 ~~~~~~g---v~~~~~~-~~~~---~~~~~K~~-ny~~~~~a~~~a~~~g~de~l~ld~--~g~v~E~~~sNif~~~~~~ 188 (270)
T cd01558 119 AELLEKG---VRVITVP-DIRW---LRCDIKSL-NLLNNVLAKQEAKEAGADEAILLDA--DGLVTEGSSSNVFIVKNGV 188 (270)
T ss_pred hhhhhcC---eEEEEec-cccc---CCCCchhh-ccHHHHHHHHHHHHcCCCEEEEEcC--CCEEEEcCcEEEEEEECCE
Confidence 2334 4444432 2332 34689997 8999999999999999999999998 8999999999999999999
Q ss_pred EEccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHH
Q 025084 154 ISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQ 233 (258)
Q Consensus 154 l~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~ 233 (258)
|+||+++.++|+||||+.++++++++|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ +++++|++++
T Consensus 189 l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV~~i--~~~~~--~~~~~~~~~~ 264 (270)
T cd01558 189 LVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEI--DGRPI--GDGKPGPVTK 264 (270)
T ss_pred EECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEEEEE--CCeEC--CCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 57765 7788999999
Q ss_pred HHHHHH
Q 025084 234 QLYSVL 239 (258)
Q Consensus 234 ~L~~~~ 239 (258)
+|++.|
T Consensus 265 ~l~~~~ 270 (270)
T cd01558 265 RLREAY 270 (270)
T ss_pred HHHHhC
Confidence 998865
No 21
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.7e-43 Score=313.05 Aligned_cols=223 Identities=24% Similarity=0.363 Sum_probs=186.5
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcC-C--CCCeEEEEEEEecCcc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLA-P--APEYTFLIYVSPVGNY 76 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~-~--~~~~~~~i~~~p~~~~ 76 (258)
+||++||+.|+|+.| +.++|.+.+.+++++|+. ...++|++++++.+.+++. + ...|+++|++.|++.+
T Consensus 51 ~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~~~~~~-------~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~ 123 (286)
T PRK06680 51 ARLFRSLGEIRIAPPMTRAELVEVLRELIRRNRV-------REGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFA 123 (286)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEecccc
Confidence 599999999999987 899999999999998863 2345555565444345544 3 2367888888887531
Q ss_pred -----ccCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEE-E
Q 025084 77 -----FKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVV-K 150 (258)
Q Consensus 77 -----~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~-~ 150 (258)
+..| +++.+.+. . ++.++++||+ ||+.+++++++|+++|+||+|++| +|+|+|++++|+|++ +
T Consensus 124 ~~~~~~~~g---v~~~~~~~-~---~~~~~~~Ks~-nyl~~vla~~eA~~~g~dd~l~ld---~g~v~E~~~sN~f~~~~ 192 (286)
T PRK06680 124 RPAAAAETG---IKVITVPD-N---RWKRCDIKSV-GLLPNVLAKQAAKEAGAQEAWMVD---DGFVTEGASSNAWIVTK 192 (286)
T ss_pred CChhHHhCC---eEEEEecC-C---CCCCCCcchh-ccHHHHHHHHHHHHCCCCEEEEec---CCEEEEcCcEEEEEEEE
Confidence 2334 44443321 1 2335689997 899999999999999999999998 689999999999999 9
Q ss_pred CCEEEccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccH
Q 025084 151 GNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGA 230 (258)
Q Consensus 151 ~g~l~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~ 230 (258)
+|+|+|||++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ +++++|+
T Consensus 193 ~~~l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~i--d~~~~--~~~~~g~ 268 (286)
T PRK06680 193 DGKLVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQI--DGKQI--GNGKPGP 268 (286)
T ss_pred CCEEEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcccEEEEEEE--CCEEC--CCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 67765 7788999
Q ss_pred HHHHHHHHHHHhHhc
Q 025084 231 VSQQLYSVLTQLQMG 245 (258)
Q Consensus 231 ~~~~L~~~~~~~~~~ 245 (258)
++++|+++|.+.+++
T Consensus 269 ~~~~L~~~~~~~~~~ 283 (286)
T PRK06680 269 IAKRLREAYEEFARL 283 (286)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987765
No 22
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.2e-43 Score=310.97 Aligned_cols=230 Identities=42% Similarity=0.644 Sum_probs=197.1
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccC
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (258)
+||++||+.|+||.| +.+++......+++.++. ...+|+|++++++++.+|+.+...+.+.+++.|+++++..
T Consensus 50 ~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (284)
T COG0115 50 ARLKRSAKRLGLPRPESEEEIELLIQLLLAKNNL------VPGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKG 123 (284)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhCC------CCceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCc
Confidence 599999999999998 888888888888877753 2238999999988877887775578899999999987754
Q ss_pred Cc--ccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEE-CCEEEc
Q 025084 80 GI--APINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK-GNVIST 156 (258)
Q Consensus 80 g~--~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~-~g~l~T 156 (258)
+. .++.+.+.+.+++..+++...+|++ ||+.+++++++|+++|+||+|++|. +|+|+|++++|+|+++ ||+++|
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~k~~-~y~~~~~a~~~A~~~G~~eal~~~~--~G~V~Eg~~sNvf~v~~dg~~~T 200 (284)
T COG0115 124 GRLEKGVVLVISSPVRRAPPGPGAAKKTG-NYLSSVLAKREAKAAGADEALLLDE--DGYVTEGAGSNVFFVKGDGVLVT 200 (284)
T ss_pred ccccCCeEEEEeehhhccCCCcchhhhhc-ccHHHHHHHHHHHHCCCCEEEEecC--CCeEEEcCcceEEEEEECCEEEC
Confidence 42 3433444334444444445568886 9999999999999999999999997 8999999999999998 889999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHH
Q 025084 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLY 236 (258)
Q Consensus 157 P~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~ 236 (258)
|+++.++||||||+.||++|+++|++++|++++.+||.+|||+|+|||+.+|+||.+| +++ . +++||+|++|+
T Consensus 201 P~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~~adevf~t~t~~~v~PV~~i--~~~-~----~~~gpit~~l~ 273 (284)
T COG0115 201 PPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLI--DGR-V----GQPGPVTKKLR 273 (284)
T ss_pred CCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHhhCCEEEEEccceEEEEEEEE--CCc-c----CCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 444 2 56999999999
Q ss_pred HHHHHhHhcC
Q 025084 237 SVLTQLQMGL 246 (258)
Q Consensus 237 ~~~~~~~~~~ 246 (258)
++|.+++.+.
T Consensus 274 ~~~~~~~~~~ 283 (284)
T COG0115 274 ELLTDIQYGE 283 (284)
T ss_pred HHHHHHhccC
Confidence 9999988874
No 23
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=5.6e-43 Score=308.27 Aligned_cols=220 Identities=26% Similarity=0.338 Sum_probs=179.9
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcC-CC--CCeEEEEEEEecCcc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLA-PA--PEYTFLIYVSPVGNY 76 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~-~~--~~~~~~i~~~p~~~~ 76 (258)
+||++||+.|+|+.| +.+++.+.+.+++++|+. ...+||+.+.++.+.+++. +. ..+.++++..|++..
T Consensus 48 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~~~~~~-------~~~~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (276)
T TIGR01121 48 DRLYASAAKIRIDIPYTKEELHQLLHELVEKNNL-------NTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRP 120 (276)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CceEEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCC
Confidence 599999999999987 899999999999999864 2345665554433334443 22 246677777765422
Q ss_pred ---ccCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCE
Q 025084 77 ---FKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV 153 (258)
Q Consensus 77 ---~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~ 153 (258)
+..|+ ++.+... .| ....++|+. ||+.+++++++|+++|+||+||++ +|+|+|++++|||++++|+
T Consensus 121 ~~~~~~gv---~~~~~~~-~~---~~~~~~K~~-nyl~~vla~~eA~~~g~de~l~~~---~g~v~E~~~sNif~v~~~~ 189 (276)
T TIGR01121 121 EENLEKGV---KAITVED-IR---WLRCDIKSL-NLLGNVLAKQEAHEKGAYEAILHR---GGTVTEGSSSNVYGIKDGV 189 (276)
T ss_pred hhHHhcCe---EEEEecC-CC---ccCCCcchh-hhHHHHHHHHHHHHcCCCEEEEec---CCeEEecCceeEEEEECCE
Confidence 23443 3333221 12 234689996 899999999999999999999995 7899999999999999999
Q ss_pred EEccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHH
Q 025084 154 ISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQ 233 (258)
Q Consensus 154 l~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~ 233 (258)
|+|||++.++|+||||+.++++|+++|++++|++++++||.+|||+|+|||++||+||++| |++.+ ++|.+||+++
T Consensus 190 ~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~i--d~~~~--~~~~~g~~~~ 265 (276)
T TIGR01121 190 LYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEI--DGQQI--GDGKPGPWTR 265 (276)
T ss_pred EEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEEE--CCEEC--CCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 57755 7888999999
Q ss_pred HHHHHHHHh
Q 025084 234 QLYSVLTQL 242 (258)
Q Consensus 234 ~L~~~~~~~ 242 (258)
+|+++|.+.
T Consensus 266 ~L~~~~~~~ 274 (276)
T TIGR01121 266 QLQKAFEEK 274 (276)
T ss_pred HHHHHHHHh
Confidence 999999764
No 24
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=8.1e-43 Score=309.43 Aligned_cols=223 Identities=20% Similarity=0.304 Sum_probs=182.2
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccc-cC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYF-KE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~-~~ 79 (258)
+||++||+.|+|+.|+.++|.+++.++++++.. ...+.+||+++..+.+.. ..|++++++.|++... ..
T Consensus 60 ~RL~~Sa~~l~i~~~~~~~l~~~i~~~v~~~~~-----~~~~~~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~ 129 (292)
T PRK07849 60 ERLARSAALLDLPEPDLDRWRRAVELAIEEWRA-----PEDEAALRLVYSRGRESG-----GAPTAWVTVSPVPERVARA 129 (292)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcC-----CCCCeEEEEEEeCCCCCC-----CCCeEEEEEeecCccchhh
Confidence 599999999999998888999999999988731 023568887775433222 2467888888875321 11
Q ss_pred CcccEEEEeecc-----eeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEE
Q 025084 80 GIAPINLVVEHE-----LHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVI 154 (258)
Q Consensus 80 g~~~~~l~~~~~-----~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l 154 (258)
...++++.+.+. +.+..|..++++||+ ||+.++++.++|+++|+||+||+|+ +|+|+|++++||||++||+|
T Consensus 130 ~~~gv~l~~~~~~~~~~~~~~~p~~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~--~G~v~E~s~~Nif~~~~g~l 206 (292)
T PRK07849 130 RREGVSVITLDRGYPSDAAERAPWLLAGAKTL-SYAVNMAALRYAARRGADDVIFTST--DGYVLEGPTSTVVIATDDRL 206 (292)
T ss_pred ccCCeEEEEEeccccCcccccCcccccccchh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEE
Confidence 112344444321 112234456889997 9999999999999999999999998 89999999999999999999
Q ss_pred EccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHH
Q 025084 155 STPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQ 234 (258)
Q Consensus 155 ~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~ 234 (258)
+||+++.|+|+||||+.|+++++++|++|+|+.++++||.+|||+|+|||++||+||++| |++++ + .|+++++
T Consensus 207 ~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~~eL~~Adevfltns~~gi~pV~~i--d~~~~--~---~~~~~~~ 279 (292)
T PRK07849 207 LTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTL--DGRPL--P---RDPLADE 279 (292)
T ss_pred ECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCHHHHhhCCEEEEecCcceEEEEEEE--CCEEC--C---CChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 68876 5 4699999
Q ss_pred HHHHHHHhH
Q 025084 235 LYSVLTQLQ 243 (258)
Q Consensus 235 L~~~~~~~~ 243 (258)
|+++|....
T Consensus 280 l~~~~~~~~ 288 (292)
T PRK07849 280 LTELVDAAI 288 (292)
T ss_pred HHHHHHHHh
Confidence 999997654
No 25
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=6.5e-43 Score=306.60 Aligned_cols=221 Identities=23% Similarity=0.320 Sum_probs=179.7
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCcccc
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFK 78 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~ 78 (258)
+||++||+.|+|+.|..+++.+.+.+++... .+.++|+.++.+.+.+|+.+. ..|.+++++.|++.+..
T Consensus 44 ~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~~~---------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 114 (268)
T PRK06092 44 QRLQDACERLAIPLDDWAQLEQEMKQLAAEL---------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYS 114 (268)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhhC---------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccCh
Confidence 5999999999999987777888887776321 234666666554445566543 35678888887754321
Q ss_pred C-CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEcc
Q 025084 79 E-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (258)
Q Consensus 79 ~-g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP 157 (258)
. ...++++.+.+ ..+..++.+.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|+++||||+++||+|+||
T Consensus 115 ~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~~a~~~A~~~g~de~l~l~~--~g~v~E~s~sNif~v~~~~~~TP 190 (268)
T PRK06092 115 RWREQGITLALCP-TRLGRNPLLAGIKHL-NRLEQVLIRAELEQTEADEALVLDS--EGWVIECCAANLFWRKGGVVYTP 190 (268)
T ss_pred hHhhCCEEEEEec-cccCCCCCccCcchh-hhHHHHHHHHHHHhcCCCEEEEECC--CCCEEEccceEEEEEECCEEECC
Confidence 1 01345555543 333333346789996 8999999999999999999999997 89999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHH
Q 025084 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYS 237 (258)
Q Consensus 158 ~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~ 237 (258)
+++.++||||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ + +||++++|++
T Consensus 191 ~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~i--d~~~~--~---~g~~~~~l~~ 263 (268)
T PRK06092 191 DLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAI--GETSY--S---SGTLTRYLQP 263 (268)
T ss_pred CccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEE--CCEEc--c---chHHHHHHHH
Confidence 998889999999999999999999999999999999999999999999999999999 67765 4 4799999999
Q ss_pred HHHH
Q 025084 238 VLTQ 241 (258)
Q Consensus 238 ~~~~ 241 (258)
+|..
T Consensus 264 ~~~~ 267 (268)
T PRK06092 264 LCER 267 (268)
T ss_pred HHhc
Confidence 8864
No 26
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=1e-42 Score=304.21 Aligned_cols=216 Identities=24% Similarity=0.316 Sum_probs=177.8
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCcccc
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFK 78 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~ 78 (258)
+||++||+.|+|+.|+.+++.+.+.++++.+. +.++|+.++.+.+.+|+.+. ..+.+++++.|++.+..
T Consensus 42 ~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 112 (261)
T TIGR03461 42 ERLQDAAARLGIPLPDWDALREEMAQLAAGYS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYS 112 (261)
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccCh
Confidence 59999999999999889999999999998652 34666666544334455433 35678888887764332
Q ss_pred CC-cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEcc
Q 025084 79 EG-IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (258)
Q Consensus 79 ~g-~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP 157 (258)
.. ..++++.+.+ ..+..+..+.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 113 ~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~-~y~~~~~a~~~A~~~g~de~llln~--~g~v~E~s~sNif~~~~~~l~TP 188 (261)
T TIGR03461 113 AWQQQGIRLGVSP-VRLGRNPLLAGIKHL-NRLEQVLIKAELENSEADEALVLDT--DGNVVECTAANIFWRKGNQVFTP 188 (261)
T ss_pred hHhcCCEEEEEec-cccCCCCCCcCcccc-ccHHHHHHHHHhhhcCCCEEEEECC--CCCEEEeccEEEEEEECCEEECC
Confidence 11 1345555543 333334456889997 8999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHH
Q 025084 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLY 236 (258)
Q Consensus 158 ~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~ 236 (258)
+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ + +||++++|+
T Consensus 189 ~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~~i--d~~~~--~---~~~~~~~l~ 260 (261)
T TIGR03461 189 DLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI--GETSY--P---SRTLTRLLQ 260 (261)
T ss_pred CccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEeCCccceEEEEEE--CCEEe--c---chHHHHHhh
Confidence 998899999999999999999999999999999999999999999999999999999 68876 4 478998874
No 27
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=298.12 Aligned_cols=214 Identities=16% Similarity=0.169 Sum_probs=176.5
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC-CCeEEEEEEEecCccccC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA-PEYTFLIYVSPVGNYFKE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~~~ 79 (258)
+||.+||+.|++..++.+++.+.+.++++. + .+..+||++++++.+.+|+++. ..|++++++.|.+.....
T Consensus 46 ~RL~~sa~~l~~~~~~~~~l~~~l~~~~~~-~-------~~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (266)
T PRK09266 46 QRLRRASRELFGAALDDDRVRAQLRAALAA-G-------PADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGPAG 117 (266)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-------CCcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCCCC
Confidence 599999998866444789999999999843 3 1357899887755555665433 367788887776543333
Q ss_pred CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEccCC
Q 025084 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAI 159 (258)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP~~ 159 (258)
| +++.+.+ +.|. +.++||. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+||+.
T Consensus 118 ~---v~l~~~~-~~r~----~~~~K~~-~~l~~vla~~~a~~~g~de~l~ln~--~g~v~E~~~sNlf~v~~~~l~TP~~ 186 (266)
T PRK09266 118 P---LRLQSVP-YERE----LPHIKHV-GTFGQLHLRRLAQRAGFDDALFVDP--DGRVSEGATWNLGFWDGGAVVWPQA 186 (266)
T ss_pred C---eEEEEEE-eccc----CCCCCCC-CcHHHHHHHHHHHHcCCCeEEEEcC--CCcEEEcCceEEEEEECCEEECCCC
Confidence 4 4444432 3443 4579997 7888999999999999999999997 8999999999999999999999994
Q ss_pred CCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHHH
Q 025084 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVL 239 (258)
Q Consensus 160 ~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~~ 239 (258)
++||||||+.|+++++++|++++|+.++++||.+|||+|+|||++||+||++| |++++ ++| ++++++|+++|
T Consensus 187 --~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i--~~~~~--~~~--~~~~~~l~~~~ 258 (266)
T PRK09266 187 --PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI--DDVAL--PDS--HALLELLRRAY 258 (266)
T ss_pred --CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEE--CCEEC--CCC--chHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999 68865 543 79999999999
Q ss_pred HH
Q 025084 240 TQ 241 (258)
Q Consensus 240 ~~ 241 (258)
.+
T Consensus 259 ~~ 260 (266)
T PRK09266 259 EA 260 (266)
T ss_pred Hh
Confidence 65
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=1.1e-41 Score=292.00 Aligned_cols=219 Identities=31% Similarity=0.414 Sum_probs=166.7
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCcccc-
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFK- 78 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~- 78 (258)
+||.+||+.+ +.++ +.+++.+.+.+++++++. .+..+||++++++++..+..+...+..............
T Consensus 8 ~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
T PF01063_consen 8 ERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIAPPRRPPP 80 (231)
T ss_dssp HHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEETCHHHHE
T ss_pred HHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCccccccccccccccccCCc
Confidence 5999999999 5554 789999999999998862 245599998887766665554432222122222221110
Q ss_pred --CCcccEEEEeecceeecCCCCCCCCccccchHhHHH-HHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEE
Q 025084 79 --EGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLK-AQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS 155 (258)
Q Consensus 79 --~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~-a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~ 155 (258)
.....+. +... ....+++++++||+ ||+.+++ +.++|+++|+||+|++|+ +|+|+|++++|||+++||+|+
T Consensus 81 ~~~~~~~~~--~~~~-~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~--~G~v~E~~~sNif~~~~~~~~ 154 (231)
T PF01063_consen 81 PLVGSVGVR--RASP-PLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDE--DGNVTEGSTSNIFFVKDGTLY 154 (231)
T ss_dssp EEEEECSEE--CETT-TSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEET--TSBEEEESSSEEEEEETTEEE
T ss_pred ceeeeeeEE--eccc-cccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecC--CCCcCCCCCcccccccCCEEE
Confidence 0111111 1111 11112247899997 7777777 777787999999999998 999999999999999999999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHH
Q 025084 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQL 235 (258)
Q Consensus 156 TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L 235 (258)
||+.+.|+|+||||+.++++++++|++++|++++++||.+|||+|+|||++||+||++| |++.+ + .||++++|
T Consensus 155 TP~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i--~~~~~--~---~~p~~~~L 227 (231)
T PF01063_consen 155 TPPLDSGILPGITRQLLLELAKELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSI--DGRSF--G---PGPITRRL 227 (231)
T ss_dssp EESGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEE--TTEES--T---THHHHHHH
T ss_pred cCChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEE--CCEEC--C---CCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 78875 4 89999999
Q ss_pred HHHH
Q 025084 236 YSVL 239 (258)
Q Consensus 236 ~~~~ 239 (258)
+++|
T Consensus 228 ~~~~ 231 (231)
T PF01063_consen 228 QEAY 231 (231)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9987
No 29
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=255.98 Aligned_cols=183 Identities=19% Similarity=0.262 Sum_probs=150.3
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||++||+.|+++.+ .+++.+.+.++++++. +..++|+++..++ .+++.+.|++.....
T Consensus 26 ~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g-----------~~~i~~~p~~~~~~~- 84 (209)
T PRK07546 26 ARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG-----------RLTVETAPLPPLPPD- 84 (209)
T ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcCCC-----------CEEEEEecCCCCCCC-
Confidence 599999999999986 6788999999887632 4568887664322 356677776532211
Q ss_pred cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEE-ccCC
Q 025084 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS-TPAI 159 (258)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~-TP~~ 159 (258)
.+.++.+.. ..+..++++.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+||+++||||+++|+|+ ||++
T Consensus 85 -~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~--~G~v~E~s~~Ni~~~~~~~~~~TP~~ 159 (209)
T PRK07546 85 -TVWRVAIAR-TRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNE--RGEVCEGTITNVFLDRGGGMLTTPPL 159 (209)
T ss_pred -CcEEEEEcC-cccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECC--CCcEEEcCceeEEEEECCEEEECCCC
Confidence 123343332 334455567789997 8999999999999999999999997 999999999999999999999 9999
Q ss_pred CCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEE
Q 025084 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214 (258)
Q Consensus 160 ~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I 214 (258)
+.|+|+||||+.+++. .+++|+.++++||.+|||+|+|||++||+||..|
T Consensus 160 ~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 160 SCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred cCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 9999999999999985 5899999999999999999999999999999865
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.95 E-value=1.2e-26 Score=193.25 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=118.4
Q ss_pred ChHHhHHhhCCCCC-C-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCcccc
Q 025084 1 MRMQVGAERMCMPS-P-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFK 78 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~-~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~ 78 (258)
+||.+||+.+++.. | +.+++.+.+.++. ++..|+|++. +.+ . +-+...|+++...
T Consensus 24 ~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~r~rl~~-~~g-~----------~~~~~~~~~~~~~ 80 (187)
T PRK07101 24 QRYERTLAEFYGKEAPFDLAEIIQPPTELQ-----------EGLVRCRIDY-NAE-I----------YQVQYFPYQRRPI 80 (187)
T ss_pred HHHHHHHHHHcccCCcccHHHHhhchhhhc-----------CCCEEEEEEe-cCC-c----------EEEEEEcCCCCCc
Confidence 59999999998854 4 7777777775541 2457888654 433 1 2223344432222
Q ss_pred CCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEccC
Q 025084 79 EGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPA 158 (258)
Q Consensus 79 ~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP~ 158 (258)
. ++++... ++...++||+ ++. .+....|++.|+||+||+| +|+|+||+++|||+++||+|+|||
T Consensus 81 ~---~~~~~~~-------~~~~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~---~G~v~E~~~sNi~~~~~~~~~TP~ 144 (187)
T PRK07101 81 R---SFQPVYC-------DDIDYSLKYT-DRS--ALNELFAQKGECDEIIIIK---NGLVTDTSIGNLAFFDGKQWFTPK 144 (187)
T ss_pred C---ceEEEec-------CCcccccccC-CHH--HHHHHHHHhCCCCEEEEEc---CCEEEEccceEEEEEECCEEEcCC
Confidence 2 2333222 2223478997 432 2334445678999999997 799999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCccee
Q 025084 159 IKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVV 208 (258)
Q Consensus 159 ~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi 208 (258)
.++|+||||+.+++. | +++|+.++++||.+|||+|+|||++|.
T Consensus 145 --~~~L~Gi~R~~ll~~----~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 145 --KPLLKGTQRARLLDE----G-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred --CCCccHHHHHHHHcc----C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 489999999999973 5 799999999999999999999999884
No 31
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=71.11 E-value=5.6 Score=27.65 Aligned_cols=54 Identities=28% Similarity=0.320 Sum_probs=36.8
Q ss_pred EEEecCHHHHhcccEEE-Ee-cCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHH
Q 025084 184 EERLVTVEELLDADEVF-CT-GTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSV 238 (258)
Q Consensus 184 ~e~~i~~~eL~~adevf-l~-ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~ 238 (258)
+||.++.++..++.-.+ -| .++.--.||+++.++|+.+.| .|..|.+.+.|.+.
T Consensus 11 ~Er~~~fe~~~ef~~s~~~C~vtipD~~~V~svt~~G~~ldy-~G~~GdLY~~L~k~ 66 (72)
T PF15507_consen 11 QERTQTFEDYNEFMRSQSGCIVTIPDYYPVTSVTYNGQDLDY-QGTYGDLYFFLMKQ 66 (72)
T ss_pred eEEEEEeCCHHHHHHHhccCcccCCCceEEEEEEECCEEecc-ccchhHHHHHHHHh
Confidence 35666555444432222 23 466677999999999999866 67889988887654
No 32
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=52.96 E-value=28 Score=24.88 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=27.6
Q ss_pred HHHHHHCCCeEE---------EEecCHHHHhcccEEEEecCc
Q 025084 173 IDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 205 (258)
Q Consensus 173 l~~~~~~g~~v~---------e~~i~~~eL~~adevfl~ns~ 205 (258)
-+.++++|+.+. +..++.+++..||-+++.+..
T Consensus 21 ~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 21 EKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 356778998877 557888999999999999886
No 33
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=50.40 E-value=32 Score=25.03 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCeEE---------EEecCHHHHhcccEEEEecCcc
Q 025084 170 KSIIDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTAV 206 (258)
Q Consensus 170 ~~ll~~~~~~g~~v~---------e~~i~~~eL~~adevfl~ns~~ 206 (258)
+.+-+.++++|+.+. +..++.+++..||-+++++...
T Consensus 19 ~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 19 EALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred HHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 344467889999877 5567779999999999999863
No 34
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=49.38 E-value=33 Score=24.62 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCeEE---------EEecCHHHHhcccEEEEecCc
Q 025084 170 KSIIDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 205 (258)
Q Consensus 170 ~~ll~~~~~~g~~v~---------e~~i~~~eL~~adevfl~ns~ 205 (258)
+.|-+.+++.|+.+. +..++.+++..||-+++.+..
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 456678889998776 446888999999999999886
No 35
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.61 E-value=50 Score=25.52 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=32.5
Q ss_pred HHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEE
Q 025084 3 MQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIR 46 (258)
Q Consensus 3 L~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir 46 (258)
|++++..|++..| +.+++...-.++.+-|.+. ..|..||+
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdks----kGGSFYLQ 98 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKS----KGGSFYLQ 98 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcc----cCcceeeh
Confidence 6889999999988 9999999999999888641 24567776
No 36
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=42.18 E-value=74 Score=22.09 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=33.8
Q ss_pred EEEccCCCCCCC-CCchHH-HHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEE
Q 025084 153 VISTPAIKGTIL-PGITRK-SIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRV 221 (258)
Q Consensus 153 ~l~TP~~~~~iL-~Gitr~-~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i 221 (258)
++|+|+.++-+| ++-++. .+.-++++.|++.+...+.. . -+ .+-.|-+|+-.+ ||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~kv~~~L~elglpye~~~~~~-----~--~~--~~P~GkVP~L~~--dg~vI 61 (74)
T cd03079 2 ALYQPYEEEQILLPDNASCLAVQTFLKMCNLPFNVRCRAN-----A--EF--MSPSGKVPFIRV--GNQIV 61 (74)
T ss_pred ccccCCccCeeecCCCCCHHHHHHHHHHcCCCcEEEecCC-----c--cc--cCCCCcccEEEE--CCEEE
Confidence 467887764443 355553 44456788999887653321 1 11 112389999655 78876
No 37
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=37.62 E-value=83 Score=24.25 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCCeEE---------EEecCHHHHhcccEEEEecCc
Q 025084 169 RKSIIDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 205 (258)
Q Consensus 169 r~~ll~~~~~~g~~v~---------e~~i~~~eL~~adevfl~ns~ 205 (258)
.+.|-..|+++|+.|. +-.++.+|+..||-+++..-.
T Consensus 21 AeaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 21 AEALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAADI 66 (122)
T ss_pred HHHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEecc
Confidence 3456667888998765 447999999999999988764
No 38
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=34.74 E-value=72 Score=24.17 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=27.5
Q ss_pred HHHHHHHCCCeEE---------EEecCHHHHhcccEEEEecCc
Q 025084 172 IIDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 205 (258)
Q Consensus 172 ll~~~~~~g~~v~---------e~~i~~~eL~~adevfl~ns~ 205 (258)
|.+.+++.|+.+. +..++.+++..||-+++.+..
T Consensus 25 L~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 25 LEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDI 67 (114)
T ss_pred HHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 3356778998877 456888999999999999886
No 39
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=34.20 E-value=87 Score=18.19 Aligned_cols=25 Identities=8% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHhHHhhCCCCCC-CHHHHHHHHHHH
Q 025084 3 MQVGAERMCMPSP-SVEQFVEAVKAT 27 (258)
Q Consensus 3 L~~Sa~~l~i~~~-~~~~l~~~i~~l 27 (258)
|++-|+.+|++.. +.+++.+.+.+.
T Consensus 9 Lk~~l~~~gL~~~G~K~~Li~Rl~~~ 34 (35)
T PF02037_consen 9 LKEELKERGLSTSGKKAELIERLKEH 34 (35)
T ss_dssp HHHHHHHTTS-STSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHh
Confidence 6778889999987 888887777654
No 40
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=32.06 E-value=48 Score=22.49 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHHHhHhc
Q 025084 228 FGAVSQQLYSVLTQLQMG 245 (258)
Q Consensus 228 ~g~~~~~L~~~~~~~~~~ 245 (258)
.||+++++.+.|.+++..
T Consensus 44 sGPlAerv~~ly~eyi~~ 61 (64)
T PF14894_consen 44 SGPLAERVYDLYNEYIEK 61 (64)
T ss_dssp -SHHHHHHHHHHHHHHH-
T ss_pred CChHHHHHHHHHHHHHHh
Confidence 699999999999998875
No 41
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=26.42 E-value=43 Score=24.34 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=26.9
Q ss_pred CCchHHHHHHHHHHCCCeEEEEecCHHHHhcc
Q 025084 165 PGITRKSIIDVAQSQGFQVEERLVTVEELLDA 196 (258)
Q Consensus 165 ~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~a 196 (258)
.|=.-+.+++.|++.|++++|.+.-.+.|..-
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~l 61 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPLLVELLLKL 61 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHhc
Confidence 56678999999999999999998877777653
No 42
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=25.03 E-value=1e+02 Score=24.72 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEE---ECCEEEccCCCCCCCCCchHHHHHHHHHHCCCeEEEE
Q 025084 114 KAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVV---KGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEER 186 (258)
Q Consensus 114 ~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~---~~g~l~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~ 186 (258)
.+...|++.|++-++.=.. .+...+....|+.-. .+-.+++|-. +++++-+.++++++|++.--.
T Consensus 94 ~~~~~A~~~g~~~I~~G~~--~~D~~~~~~~~l~~~~~~~~~~i~rPl~------~~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 94 IAEKLAEELGADAIVTGES--LGQVASQTLENLLVISSGTDLPILRPLI------GFDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred HHHHHHHHcCCCEEEEccC--cccchHHHHHhhhhcccCCCCeEECCCC------CCCHHHHHHHHHHcCCcceec
Confidence 3455688889885443221 234556666666532 4567888853 899999999999999865433
No 43
>PRK06683 hypothetical protein; Provisional
Probab=24.74 E-value=1.1e+02 Score=21.63 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHCCCeEEEEecCHHHHhcc
Q 025084 168 TRKSIIDVAQSQGFQVEERLVTVEELLDA 196 (258)
Q Consensus 168 tr~~ll~~~~~~g~~v~e~~i~~~eL~~a 196 (258)
+++.+.++|+..++|+..-. +..||..|
T Consensus 41 ~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A 68 (82)
T PRK06683 41 LTHVIIRTALQHNIPITKVE-SVRKLGKV 68 (82)
T ss_pred HHHHHHHHHHhcCCCEEEEC-CHHHHHHH
Confidence 88999999999999998777 99999887
No 44
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=24.45 E-value=91 Score=26.48 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHCCCeEEEEecCHHHHhc
Q 025084 168 TRKSIIDVAQSQGFQVEERLVTVEELLD 195 (258)
Q Consensus 168 tr~~ll~~~~~~g~~v~e~~i~~~eL~~ 195 (258)
--..+++.|++.|+.|+.+.++.+||..
T Consensus 91 RV~~lF~~A~~~gi~V~~rsvs~~ei~~ 118 (212)
T PF09778_consen 91 RVNRLFQKAKAAGINVEKRSVSIQEIIE 118 (212)
T ss_pred HHHHHHHHHHHcCCceEEeeccHHHHHH
Confidence 3456777888899999999999999865
No 45
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=23.01 E-value=77 Score=20.96 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=26.4
Q ss_pred ceeEEEEECCEEEccCCCCCCCCCchHHHHHHHHHHCC
Q 025084 143 SCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180 (258)
Q Consensus 143 ~sNvf~~~~g~l~TP~~~~~iL~Gitr~~ll~~~~~~g 180 (258)
-++++++.+++.+--.+..-.|-|+--...-++|+..|
T Consensus 31 ~~~f~ivi~~q~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 31 ESHFAIVIGEQSIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred CCcEEEEECCeEEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 46677777777776666666777877777777776554
No 46
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=94 Score=23.71 Aligned_cols=43 Identities=35% Similarity=0.484 Sum_probs=29.3
Q ss_pred CCCCchHHHHHHHHHHCCC-eEEEEe----cCHHHHhcccEEEEecCcc
Q 025084 163 ILPGITRKSIIDVAQSQGF-QVEERL----VTVEELLDADEVFCTGTAV 206 (258)
Q Consensus 163 iL~Gitr~~ll~~~~~~g~-~v~e~~----i~~~eL~~adevfl~ns~~ 206 (258)
.|-||+|..+-++.+. ++ .++-+. .++.-|..-|-+|+|++..
T Consensus 5 ~LtGIs~~vie~l~~~-~~rTieiRsa~N~~tv~rl~~GDlVFlT~~~~ 52 (122)
T COG1935 5 ALTGISRRVIESLLRN-PIRTIEIRSARNLLTVLRLHEGDLVFLTSTSL 52 (122)
T ss_pred EEechhHHHHHHHHhC-CceEEEEEcccchHHhhcCCCCCEEEEehhHh
Confidence 5789999988777655 34 333332 4555667779999998753
No 47
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=22.81 E-value=90 Score=23.98 Aligned_cols=61 Identities=26% Similarity=0.385 Sum_probs=39.6
Q ss_pred CCCCchHHHHHHHHHHCCCeEEEEe----cCHHHHhcccEEEEecCcc--------e-eEEeEEEeECCeEEEc
Q 025084 163 ILPGITRKSIIDVAQSQGFQVEERL----VTVEELLDADEVFCTGTAV--------V-VSPVGSITYLGKRVSY 223 (258)
Q Consensus 163 iL~Gitr~~ll~~~~~~g~~v~e~~----i~~~eL~~adevfl~ns~~--------g-i~pV~~I~~~~~~i~~ 223 (258)
.|-||.+..+-++.+..=-.++-+. +++..+..-|-+|+|++.. | |.-|.+++.-.+.+.+
T Consensus 5 aLTGIs~~vi~eL~~~~~RTiEirSa~N~~~~~~~~~Gd~VFlT~~~~~Dl~~Gt~GiIa~V~~~~i~~qri~~ 78 (119)
T PF04322_consen 5 ALTGISRRVIDELKKNHIRTIEIRSAHNVIALESLDPGDRVFLTSVSLEDLTPGTEGIIAEVKKIEISMQRIVW 78 (119)
T ss_pred EEeccCHHHHHHHHhCCceEEEEEcchheeeeecCCCCCEEEEecCCHHHCCCCCCeEEEEEEEEEEEEEEEee
Confidence 5789999988887665422344343 5666777779999998754 2 4566666444444433
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=21.88 E-value=82 Score=21.12 Aligned_cols=64 Identities=13% Similarity=0.006 Sum_probs=36.6
Q ss_pred HHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHHH
Q 025084 171 SIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVL 239 (258)
Q Consensus 171 ~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~~ 239 (258)
.+.-++.+.|++.+...+...+-....+-|.--+-.|-+|+-..+ +|..+ . ....+.+-|.+.|
T Consensus 13 ~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l--~--eS~aI~~yL~~~~ 76 (77)
T cd03057 13 APHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVL--T--ESAAILQYLADLH 76 (77)
T ss_pred HHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEE--E--cHHHHHHHHHHhC
Confidence 355567778998887777654322222223333446888987662 25655 2 2566776665543
No 49
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.84 E-value=1.5e+02 Score=20.02 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHH
Q 025084 170 KSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSV 238 (258)
Q Consensus 170 ~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~ 238 (258)
..+...+.+.|++.++..+...+-. .++..-.| -.|-+|+-..+.+|..+ + ..+.+.+.|.+.
T Consensus 14 ~kv~~~L~~~gi~y~~~~v~~~~~~-~~~~~~~~-p~~~vP~l~~~~~~~~l-~---es~~I~~yL~~~ 76 (77)
T cd03041 14 RLVREVLTELELDVILYPCPKGSPK-RDKFLEKG-GKVQVPYLVDPNTGVQM-F---ESADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHHcCCcEEEEECCCChHH-HHHHHHhC-CCCcccEEEeCCCCeEE-E---cHHHHHHHHHHh
Confidence 3455567888999998888644322 23333334 45889987542123444 2 256666666554
No 50
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.44 E-value=1.4e+02 Score=21.07 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHCCCeEEEEecCHHHHhcc
Q 025084 167 ITRKSIIDVAQSQGFQVEERLVTVEELLDA 196 (258)
Q Consensus 167 itr~~ll~~~~~~g~~v~e~~i~~~eL~~a 196 (258)
-+++.+.++|++.++|+..-. +-.||..|
T Consensus 40 ~~~~~i~~~c~~~~Vp~~~~~-s~~eLG~a 68 (82)
T PRK13602 40 RLTEKVEALANEKGVPVSKVD-SMKKLGKA 68 (82)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CHHHHHHH
Confidence 489999999999999998777 88999877
No 51
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=20.78 E-value=1.3e+02 Score=19.61 Aligned_cols=60 Identities=12% Similarity=-0.041 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHH
Q 025084 170 KSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSV 238 (258)
Q Consensus 170 ~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~ 238 (258)
+.+.-++++.|++.++..+.... ...+..-.| ..|-+|+-.. +|..+ . ....+.+.|.+.
T Consensus 13 ~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~-p~~~vP~l~~--~~~~l--~--es~aI~~yL~~~ 72 (73)
T cd03059 13 HRVRIVLAEKGVSVEIIDVDPDN--PPEDLAELN-PYGTVPTLVD--RDLVL--Y--ESRIIMEYLDER 72 (73)
T ss_pred HHHHHHHHHcCCccEEEEcCCCC--CCHHHHhhC-CCCCCCEEEE--CCEEE--E--cHHHHHHHHHhh
Confidence 44455677889999988877542 222222234 4588887654 56655 2 255666666543
No 52
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=20.56 E-value=52 Score=28.50 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=24.2
Q ss_pred CEEEccCCCCCCCCCch----HHHHHHHHHHCCCeEEEEecCHHHH
Q 025084 152 NVISTPAIKGTILPGIT----RKSIIDVAQSQGFQVEERLVTVEEL 193 (258)
Q Consensus 152 g~l~TP~~~~~iL~Git----r~~ll~~~~~~g~~v~e~~i~~~eL 193 (258)
.+.+||| .+|.||+=| |.+++.+.++. ..|..++.+|+
T Consensus 30 ~TYitPP-G~GFlP~~TA~HHr~~il~Lv~~a---l~ea~v~~~di 71 (336)
T KOG2708|consen 30 HTYITPP-GEGFLPRDTARHHRAWILGLVKQA---LEEAGVTSDDI 71 (336)
T ss_pred ccccCCC-CCCCCcchhHHHHHHHHHHHHHHH---HHHcCCChhhC
Confidence 3567888 689999988 45566654442 34555555554
Done!