Query 025084
Match_columns 258
No_of_seqs 122 out of 1274
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 03:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dth_A Branched-chain amino ac 100.0 6.2E-55 2.1E-59 395.8 32.4 258 1-258 104-372 (372)
2 4dqn_A Putative branched-chain 100.0 1.2E-54 4E-59 391.5 31.3 257 1-258 84-344 (345)
3 3dtg_A Branched-chain amino ac 100.0 3.8E-53 1.3E-57 385.3 31.5 258 1-258 104-372 (372)
4 3u0g_A Putative branched-chain 100.0 7.1E-53 2.4E-57 377.6 30.2 242 1-257 82-328 (328)
5 3uzo_A Branched-chain-amino-ac 100.0 3.8E-53 1.3E-57 383.0 28.6 255 1-257 99-358 (358)
6 2a1h_A Branched chain aminotra 100.0 1.5E-51 5.1E-56 374.2 31.2 253 1-257 98-365 (365)
7 1iye_A Branched-chain amino ac 100.0 2.6E-51 8.8E-56 365.4 30.5 244 1-258 59-308 (309)
8 2coi_A Branched chain aminotra 100.0 3.8E-51 1.3E-55 373.4 30.7 254 1-258 118-386 (386)
9 2eiy_A ILVE, branched-chain am 100.0 5.6E-51 1.9E-55 363.1 30.9 243 1-258 58-306 (308)
10 3daa_A D-amino acid aminotrans 100.0 3.8E-47 1.3E-51 333.6 27.1 221 1-243 49-276 (277)
11 1i2k_A 4-amino-4-deoxychorisma 100.0 2.2E-46 7.6E-51 327.5 26.8 221 1-241 44-267 (269)
12 3lul_A 4-amino-4-deoxychorisma 100.0 1.7E-46 5.9E-51 328.7 25.3 219 1-245 48-269 (272)
13 2xpf_A 4-amino-4-deoxychorisma 100.0 1E-45 3.6E-50 326.8 25.2 222 1-243 66-290 (292)
14 3csw_A BCAT, putative branched 100.0 8E-45 2.7E-49 320.1 24.1 221 1-254 61-283 (285)
15 3sno_A Hypothetical aminotrans 100.0 1.5E-44 5.1E-49 322.0 20.6 221 1-243 68-314 (315)
16 2zgi_A Putative 4-amino-4-deox 100.0 4.6E-39 1.6E-43 277.7 14.7 181 1-214 43-228 (246)
17 3qqm_A MLR3007 protein; struct 100.0 2.5E-38 8.5E-43 269.0 17.1 182 1-213 38-220 (221)
18 3ceb_A D-aminoacid aminotransf 100.0 2E-33 6.9E-38 234.1 14.6 165 1-208 26-194 (194)
19 2kyr_A Fructose-like phosphotr 49.3 22 0.00076 25.8 4.3 44 162-205 17-70 (111)
20 2r48_A Phosphotransferase syst 36.2 37 0.0013 24.4 3.8 44 162-205 14-67 (106)
21 2h8b_A Insulin-like 3; insulin 34.7 3 0.0001 21.8 -1.7 17 160-176 8-24 (26)
22 2r4q_A Phosphotransferase syst 33.1 37 0.0013 24.4 3.3 45 161-205 13-67 (106)
23 2lqo_A Putative glutaredoxin R 32.7 21 0.00071 24.7 1.9 62 172-241 20-81 (92)
24 2m1z_A LMO0427 protein; homolo 31.3 64 0.0022 23.1 4.3 44 162-205 14-67 (106)
25 2lfw_B NEPR anti sigma factor; 31.1 31 0.001 22.3 2.3 24 226-249 23-46 (62)
26 3mcb_B Transcription factor BT 29.2 80 0.0027 20.0 4.0 43 122-168 5-55 (58)
27 3lkx_A Transcription factor BT 25.1 74 0.0025 20.8 3.4 44 123-170 6-57 (66)
28 1e2b_A Enzyme IIB-cellobiose; 23.7 56 0.0019 23.1 2.9 76 161-240 12-101 (106)
29 2fz5_A Flavodoxin; alpha/beta 22.7 1.5E+02 0.005 20.9 5.2 42 165-206 10-57 (137)
30 2bmv_A Flavodoxin; electron tr 21.8 98 0.0034 23.0 4.2 46 165-211 12-62 (164)
No 1
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=6.2e-55 Score=395.76 Aligned_cols=258 Identities=40% Similarity=0.753 Sum_probs=236.4
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCC-CCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS-GKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~-~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (258)
+||.+||++|+||.++.++|.+.+.+++++|+.|+|+. ..+.+|||++++++++.+|+.|+..++++|++.|.++++..
T Consensus 104 ~RL~~Sa~~L~mp~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~p~~~~~~~i~~~p~~~y~~~ 183 (372)
T 3dth_A 104 ARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKG 183 (372)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCSCCSEEEEEEEEEEESCSSSC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcCCCCCeEEEEEEeeCchhhcc
Confidence 59999999999996599999999999999999888865 35679999998887777888887788999999999988877
Q ss_pred CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECC----EEE
Q 025084 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VIS 155 (258)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g----~l~ 155 (258)
|.+++++.+.+++.|..|+.++++|+.+||+++++++++|+++|+||+||+|...+|+|+|++++|||+++++ +|+
T Consensus 184 g~~~v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~~~g~~l~ 263 (372)
T 3dth_A 184 GIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLV 263 (372)
T ss_dssp SSSCEEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCEEE
T ss_pred CCccEEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEEEcCceeEEEEECCCCceEEE
Confidence 8888998887678899998899999966999999999999999999999999533799999999999999998 999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcc------cEEEEecCcceeEEeEEEeECCeEEEcCCCCcc
Q 025084 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFG 229 (258)
Q Consensus 156 TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~a------devfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g 229 (258)
||+++.+|||||||+.||++|+++|++|+|++++++||.+| ||+|+|||+++|+||++|+..++.+.+++|.+|
T Consensus 264 TP~l~~~iL~GITR~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf~tgTa~~i~PV~~Id~~~~~~~i~~g~~G 343 (372)
T 3dth_A 264 TPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPG 343 (372)
T ss_dssp ECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEECTTSSCC
T ss_pred ECCCCCCcCHHHHHHHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEEEecccceEEEEEEEccCCceEECCCCCcC
Confidence 99999999999999999999999999999999999999999 999999999999999999766665556888999
Q ss_pred HHHHHHHHHHHHhHhcCCCCCCCCeeeCC
Q 025084 230 AVSQQLYSVLTQLQMGLIADKMNWTLELS 258 (258)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
|++++|+++|.+++.|+.+|+.+|+.+|.
T Consensus 344 pvt~~L~~~l~~iq~g~~~d~~~W~~~v~ 372 (372)
T 3dth_A 344 EITMALRDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp HHHHHHHHHHHHHHHTSSCCTTCCEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEECC
Confidence 99999999999999999999999999884
No 2
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-54 Score=391.50 Aligned_cols=257 Identities=39% Similarity=0.666 Sum_probs=230.3
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCC-CccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~-~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (258)
+||.+||+.|+||.++.++|.+.+.+++++|+.|+|+.+ ++.+|||++++++++.+|+.|+..++++|++.|++.++..
T Consensus 84 ~RL~~Sa~~L~i~~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~ 163 (345)
T 4dqn_A 84 ERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKG 163 (345)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCCCCeEEEEEEEECcccccc
Confidence 599999999999955999999999999999998887632 3578999998888777888877678999999998887766
Q ss_pred CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEE-ECCEEEccC
Q 025084 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVV-KGNVISTPA 158 (258)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~-~~g~l~TP~ 158 (258)
+.+++++.+.+++.|..|+.++++|+..||+++++|+++|+++|+||+||+|..++|+|+|++++|||++ +||+|+||+
T Consensus 164 ~~~gv~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~g~l~TP~ 243 (345)
T 4dqn_A 164 GLAPTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPL 243 (345)
T ss_dssp SCCCEEEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEEEEEETTCEEEECC
T ss_pred CCCCEEEEEccceEecCCCccccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceEEEEecCCEEEeCC
Confidence 6678888887667899999899999944999999999999999999999999621499999999999998 899999999
Q ss_pred CCCCCCCCchHHHHHHHHHH-CCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCC-CccHHHHHHH
Q 025084 159 IKGTILPGITRKSIIDVAQS-QGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEG-GFGAVSQQLY 236 (258)
Q Consensus 159 ~~~~iL~Gitr~~ll~~~~~-~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g-~~g~~~~~L~ 236 (258)
+.++|+||||+.||++|++ +|++|+|++++++||.+|||+|+|||+++|+||++|+..++.+.+++| ++||++++|+
T Consensus 244 -~~~iL~GitR~~vl~la~~~~g~~v~e~~i~~~el~~adevf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~L~ 322 (345)
T 4dqn_A 244 -SPSILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFHVFYSETEVGPVTHKLY 322 (345)
T ss_dssp -CTTSCCCHHHHHHHHHHHHTTCCEEEECCCBTTCGGGEEEEEEEETTTEEEEEEEEEETTEEEESSCSSSCCHHHHHHH
T ss_pred -CCCccHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHhhhHHhhhcchhHEEEEEEECcccceeeeCCCCCcCHHHHHHH
Confidence 8899999999999999999 999999999999999999999999999999999999755555555665 6999999999
Q ss_pred HHHHHhHhcCCCCCCCCeeeCC
Q 025084 237 SVLTQLQMGLIADKMNWTLELS 258 (258)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
++|.+++.|+.+|+.+|+.+|.
T Consensus 323 ~~~~~i~~g~~~~~~~W~~~v~ 344 (345)
T 4dqn_A 323 DELTGIQFGDVKAPEGWIYKVD 344 (345)
T ss_dssp HHHHHHHTTSSCCCTTCEEETT
T ss_pred HHHHHHHcCCCCCCCCCceECC
Confidence 9999999999999999999884
No 3
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=3.8e-53 Score=385.29 Aligned_cols=258 Identities=39% Similarity=0.746 Sum_probs=234.4
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCC-CccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~-~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (258)
+||.+||+.|+||.++.+++.+.+.++++.+..|+|..+ ...+|||++++++.+.+|+.|...+.+++++.|...++..
T Consensus 104 ~Rl~~Sa~~l~iP~~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~p~~~~~~~ii~~p~~~~~~~ 183 (372)
T 3dtg_A 104 ARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKG 183 (372)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCSCCSEEEEEEEEEEESCSSTT
T ss_pred HHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcCCCCCceeeeEeccccccccc
Confidence 499999999999988899999999999999988887543 4679999999988888998888888888999998888877
Q ss_pred CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEE----ECCEEE
Q 025084 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVV----KGNVIS 155 (258)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~----~~g~l~ 155 (258)
|..+..+.+...+.|..|......|.++||+++++++++|+++||||+|++|..++|+|+|++++||||| +||+++
T Consensus 184 ~~~~~~~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V~E~~~sNiF~V~~~~kdg~li 263 (372)
T 3dtg_A 184 GIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLV 263 (372)
T ss_dssp SSSCEEEEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCEEE
T ss_pred CcccceeecccceeecCcCCcchHHhcCCcchhhhHHHHHHhcCcchhhhhccccccceeecCceEEEEEEecCCCceEE
Confidence 7777766676677898888888888888999999999999999999999999545789999999999999 577999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcc------cEEEEecCcceeEEeEEEeECCeEEEcCCCCcc
Q 025084 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFG 229 (258)
Q Consensus 156 TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~a------devfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g 229 (258)
|||++.+||+||||+.||++|+++|++|+|++++++||.+| ||+|+|||+.+|+||++|++.+..+.+|+|++|
T Consensus 264 TPpl~~~iL~GITR~sVi~LA~~~Gi~V~Er~it~~El~~A~~~~~~dEvF~tGTaa~I~PV~~Id~~~~~~~ig~G~~G 343 (372)
T 3dtg_A 264 TPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPG 343 (372)
T ss_dssp ECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEECTTSSCC
T ss_pred eCCccccccccHHHHHHHHHHHHCCceEEEEeCCHHHHHHHhhcCCCcEEEECCCcceEEEEEEEecCCceEEcCCCCcC
Confidence 99999999999999999999999999999999999999998 999999999999999999877766666999999
Q ss_pred HHHHHHHHHHHHhHhcCCCCCCCCeeeCC
Q 025084 230 AVSQQLYSVLTQLQMGLIADKMNWTLELS 258 (258)
Q Consensus 230 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
|+|++|+++|.++|+|+.+|+.+|+.+|+
T Consensus 344 pvt~~L~~~~~~iq~G~~~d~~~W~~~v~ 372 (372)
T 3dtg_A 344 EITMALRDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp HHHHHHHHHHHHHHTTSSCCTTCCEEECC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCcEeCC
Confidence 99999999999999999999999999985
No 4
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=7.1e-53 Score=377.63 Aligned_cols=242 Identities=29% Similarity=0.450 Sum_probs=214.4
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCC-CeEEEEEEEecCcccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAP-EYTFLIYVSPVGNYFK 78 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~-~~~~~i~~~p~~~~~~ 78 (258)
+||.+||+.|+|+.| +.++|.+.+.+++++|+. .++|||++++++.+.+|+.|.. .++++|++.|++.++.
T Consensus 82 ~RL~~Sa~~l~i~~p~~~~~l~~~i~~lv~~n~~-------~~~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~ 154 (328)
T 3u0g_A 82 KRLLNSAKIFQMDVPFDQETLEAAQRDVVRENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLG 154 (328)
T ss_dssp HHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-------SSEEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCC
Confidence 599999999999988 999999999999999863 4689999998776677877654 5888899999876542
Q ss_pred CC--cccEEEEeecceeecCCCC-CCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEE
Q 025084 79 EG--IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS 155 (258)
Q Consensus 79 ~g--~~~~~l~~~~~~~r~~~~~-~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~ 155 (258)
.+ ..++++.+. ++.|..++. ++++|++.||+++++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+
T Consensus 155 ~~~~~~gv~l~~~-~~~R~~~~~~~~~~K~t~nyl~~vla~~eA~~~G~~e~l~ld~--~g~v~E~~~sNif~v~~g~l~ 231 (328)
T 3u0g_A 155 EEGLAKGIRVKTS-SFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGENFFLVNRGKLY 231 (328)
T ss_dssp HHHHHHCEEEEEC-SSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSCEEEESSSEEEEEETTEEE
T ss_pred hhhhcCCEEEEEe-eeeecCCCCcccchhhhhhhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceeEEEEECCEEE
Confidence 11 145667665 467888777 799994459999999999999999999999997 899999999999999999999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHH
Q 025084 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQL 235 (258)
Q Consensus 156 TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L 235 (258)
||+++. +|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||++||+||++| |++.+ ++|.+||++++|
T Consensus 232 TP~~~~-iL~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~adevf~tns~~~v~PV~~I--d~~~~--~~g~~g~vt~~L 306 (328)
T 3u0g_A 232 TPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL--DNRTI--GGGARGPITEKL 306 (328)
T ss_dssp ECCSSS-SCCCHHHHHHHHHHHHTTCCEEECCCCHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--TTSSCCHHHHHH
T ss_pred eCCccc-cchHHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEEcchhhEEEEEEE--CCEEC--CCCCCCHHHHHH
Confidence 999987 9999999999999999999999999999999999999999999999999999 78876 888999999999
Q ss_pred HHHHHHhHhcCCCCCCCCeeeC
Q 025084 236 YSVLTQLQMGLIADKMNWTLEL 257 (258)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
+++|.+++.|+.+|+.+||.+|
T Consensus 307 ~~~~~~~~~g~~~~~~~W~~~v 328 (328)
T 3u0g_A 307 QSAFFDVVNGKSAKHADWLTKI 328 (328)
T ss_dssp HHHHHHHHTTCCSTTGGGEEEC
T ss_pred HHHHHHHHcCCCCCCCCCceeC
Confidence 9999999999999999999987
No 5
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=3.8e-53 Score=382.99 Aligned_cols=255 Identities=36% Similarity=0.639 Sum_probs=228.3
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCC-CccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~-~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (258)
+||.+||++|+||.++.++|.+.+.+++++|+.|+|+.+ .+.+|||++++++++.+|+.|...+.++|++.|.++++..
T Consensus 99 ~RL~~Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~~~~~ 178 (358)
T 3uzo_A 99 ARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKG 178 (358)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCSEEEEEEEEEEECCSSCS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCCCeEEEEEEecChhhhhc
Confidence 599999999999955999999999999999998887643 3578999999988878898877678899999999888877
Q ss_pred CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEE-CCE-EEcc
Q 025084 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK-GNV-ISTP 157 (258)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~-~g~-l~TP 157 (258)
|.+++++.+.+ +.|..|..++++|++.||+.+++++++|+++|+||+||+|...+|+|+|++++|||+++ ||+ |+||
T Consensus 179 g~~~v~l~~~~-~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNif~v~~dg~~l~TP 257 (358)
T 3uzo_A 179 GLTPTNFITSD-YDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTP 257 (358)
T ss_dssp SSCCEEEECCS-CCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEEEEEETTSCEEEEE
T ss_pred CCccEEEEEEe-eeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeEEEEECCCeEEEEC
Confidence 88888888764 78988888899996459999999999999999999999997213999999999999995 788 9999
Q ss_pred CCCCCCCCCchHHHHHHHHHH-CCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCC-CCccHHHHHH
Q 025084 158 AIKGTILPGITRKSIIDVAQS-QGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGE-GGFGAVSQQL 235 (258)
Q Consensus 158 ~~~~~iL~Gitr~~ll~~~~~-~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~-g~~g~~~~~L 235 (258)
+ +.++|+||||+.|+++|++ +|++|+|++++++||.+|||+|+|||+++|+||++|+..++.+.+++ +.+||++++|
T Consensus 258 ~-~~~iL~GItR~~vl~la~~~~g~~v~e~~i~~~eL~~adEvf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~L 336 (358)
T 3uzo_A 258 Q-SPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDDFHVFYSESEPGPVTRRL 336 (358)
T ss_dssp C-CTTSCCCHHHHHHHHHHHHTTCCEEEEECCBTTCGGGEEEEEEECTTTSSEEEEEEEETTEEEESSCSSSCCHHHHHH
T ss_pred C-cCCcccCHHHHHHHHHHHhhcCCeEEEEECCHHHHHhhcceeEEcCcceEEEEEEECcccceeEeCCCCCcCHHHHHH
Confidence 9 8899999999999999999 99999999999999999999999999999999999976555444554 4699999999
Q ss_pred HHHHHHhHhcCCCCCCCCeeeC
Q 025084 236 YSVLTQLQMGLIADKMNWTLEL 257 (258)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
+++|.+++.|+.+|+.+|+.+|
T Consensus 337 ~~~~~~iq~g~~~~~~~W~~~v 358 (358)
T 3uzo_A 337 YDELVGIQYGDKEAPEGWIVKV 358 (358)
T ss_dssp HHHHHHHHTTSSCCCTTCCEEC
T ss_pred HHHHHHHHcCCCCCCCCCceEC
Confidence 9999999999999999999886
No 6
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=1.5e-51 Score=374.23 Aligned_cols=253 Identities=34% Similarity=0.611 Sum_probs=225.4
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||.+||++|+||.++.++|.+.+.++++.|+.|+|......+|||++++++++.+|+.|+..|+++|++.|++.++..|
T Consensus 98 ~RL~~Sa~~l~~~~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~g 177 (365)
T 2a1h_A 98 DRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGG 177 (365)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCcEEEEEEEECccccccc
Confidence 59999999999995589999999999999998777643223689999998877778887777889999999998877667
Q ss_pred -cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEE-ecCCCceEEEcCceeEEEEE---CCE--
Q 025084 81 -IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYL-DCVHKRYLEEVSSCNIFVVK---GNV-- 153 (258)
Q Consensus 81 -~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~l-d~~~~g~v~E~t~sNvf~~~---~g~-- 153 (258)
.+++++.+.+.+.|..++.++++|+..||+.+++++++|+++|+||+||+ |. +|+|+|++++|||+++ ||+
T Consensus 178 ~~~~v~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l~d~--~G~V~E~~~sNif~v~~~~dg~~~ 255 (365)
T 2a1h_A 178 SVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGP--DHQLTEVGTMNIFVYWTHEDGVLE 255 (365)
T ss_dssp SCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETT--TTEEEEETTEEEEEEEECTTSCEE
T ss_pred cccceEEEEccccccCCCCccchhchhhccHHHHHHHHHHHHcCCCeEEEEECC--CCeEEEcCceEEEEEEecCCCcEE
Confidence 67788888766678888888999985599999999999999999999999 76 8999999999999996 675
Q ss_pred EEccCCCCCCCCCchHHHHHHHHHHC-CCeEEEEecCHHHHhcc------cEEEEecCcceeEEeEEEeECCeEEEcC-C
Q 025084 154 ISTPAIKGTILPGITRKSIIDVAQSQ-GFQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKRVSYG-E 225 (258)
Q Consensus 154 l~TP~~~~~iL~Gitr~~ll~~~~~~-g~~v~e~~i~~~eL~~a------devfl~ns~~gi~pV~~I~~~~~~i~~~-~ 225 (258)
|+|||++.++||||||+.||++|+++ |++|+|+.++++||.+| ||+|+|||+++|+||++|+++++.+.++ +
T Consensus 256 l~TP~l~~~iL~GITR~~vl~la~~~~G~~v~Er~i~~~eL~~A~~~g~~dEvf~tnt~~~i~PV~~i~~~~~~~~~~~~ 335 (365)
T 2a1h_A 256 LVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTM 335 (365)
T ss_dssp EEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEEEEETTEEEECTTG
T ss_pred EEeCCCCCCccccHHHHHHHHHHHhcCCCceEEEeCCHHHHHHHHhcCCccEEEEcCCeeEEEEEEEEEeCCeEEeeCCC
Confidence 99999999999999999999999994 99999999999999999 9999999999999999997668887554 5
Q ss_pred CCccHHHHHHHHHHHHhHhcCCCCCCCCeeeC
Q 025084 226 GGFGAVSQQLYSVLTQLQMGLIADKMNWTLEL 257 (258)
Q Consensus 226 g~~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 257 (258)
|.+||++++|+++|.+++.|+.+ .+|+.+|
T Consensus 336 g~~g~vt~~L~~~~~~~~~g~~~--~~W~~~v 365 (365)
T 2a1h_A 336 ENGPELILRFQKELKEIQYGIRA--HEWMFPV 365 (365)
T ss_dssp GGTTHHHHHHHHHHHHHHTTSSC--CTTEEEC
T ss_pred CCcCHHHHHHHHHHHHHHcCCCC--CCCeeeC
Confidence 67899999999999999999887 7999876
No 7
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=2.6e-51 Score=365.42 Aligned_cols=244 Identities=33% Similarity=0.535 Sum_probs=216.4
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (258)
+||.+||+.|+|+.| +.++|.+.+.+++++|+. +..|||++++++.+.+|+.|+ ..++++|.+.|++.++
T Consensus 59 ~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~-------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~ 131 (309)
T 1iye_A 59 QRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYL 131 (309)
T ss_dssp HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccC
Confidence 599999999999977 999999999999998862 467999988776666777654 3678889999887654
Q ss_pred cCC--cccEEEEeecceeecCCCC-CCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEE
Q 025084 78 KEG--IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVI 154 (258)
Q Consensus 78 ~~g--~~~~~l~~~~~~~r~~~~~-~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l 154 (258)
..+ ..++++.+.+ +.|..++. ++++|++.||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|
T Consensus 132 ~~~~~~~gv~l~~~~-~~r~~~~~~~~~~K~~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l 208 (309)
T 1iye_A 132 GAEALEQGIDAMVSS-WNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFEVKDGVL 208 (309)
T ss_dssp CTTHHHHCEEEEECS-SCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSBEEEETTBEEEEEETTEE
T ss_pred CcccccCCeEEEEee-eeccCCCCCCccccchhhhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCceEEEEEECCEE
Confidence 332 2456776654 66777765 489998559999999999999999999999997 89999999999999999999
Q ss_pred EccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHH
Q 025084 155 STPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQ 234 (258)
Q Consensus 155 ~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~ 234 (258)
+||+++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ ++|.+||++++
T Consensus 209 ~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~--~~g~~g~~~~~ 284 (309)
T 1iye_A 209 FTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV--DGIQV--GEGRCGPVTKR 284 (309)
T ss_dssp EECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBTTHHHHCSEEEEEETTTEEEEEEEE--TTEEC--TTSSCCHHHHH
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCcEEEEccCCCEEEEEEEE--CCEEC--CCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 68876 88889999999
Q ss_pred HHHHHHHhHhcCCCCCCCCeeeCC
Q 025084 235 LYSVLTQLQMGLIADKMNWTLELS 258 (258)
Q Consensus 235 L~~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
|+++|.+++.|..+++.+|+.+|.
T Consensus 285 l~~~~~~~~~g~~~~~~~w~~~v~ 308 (309)
T 1iye_A 285 IQQAFFGLFTGETEDKWGWLDQVN 308 (309)
T ss_dssp HHHHHHGGGTTSSCCCSCCEEECC
T ss_pred HHHHHHHHHcCCCCccCCCCeECC
Confidence 999999999999999999999874
No 8
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=3.8e-51 Score=373.42 Aligned_cols=254 Identities=36% Similarity=0.603 Sum_probs=223.5
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||.+||++|+||.++.++|.+.+.++++.|+.|+|....+.+|||++++|+++.+|+.|+..++++|++.|.+.++..|
T Consensus 118 ~RL~~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~y~~~~ 197 (386)
T 2coi_A 118 DRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSG 197 (386)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSCCSEEEEEEEEEEECCCC---
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEEECccccccc
Confidence 59999999999995589999999999999998887753345789999998877778888777889999999998887666
Q ss_pred -cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEe-cCCCceEEEcCceeEEEEE---CC--E
Q 025084 81 -IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLD-CVHKRYLEEVSSCNIFVVK---GN--V 153 (258)
Q Consensus 81 -~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld-~~~~g~v~E~t~sNvf~~~---~g--~ 153 (258)
.+++++.+.+.+.|..|..++.+|+..||+.+++++++|+++|+||+||+| . +|+|+|++++|||+++ || +
T Consensus 198 ~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ld~~--~g~V~E~~~sNiF~v~~~~~g~~~ 275 (386)
T 2coi_A 198 TFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGE--DHQITEVGTMNLFLYWINEDGEEE 275 (386)
T ss_dssp --CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEEEETT--TTEEEEETTEEEEEEEECTTSCEE
T ss_pred ccccEEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEEEECC--CCEEEEeCCceEEEEEEcCCCCEE
Confidence 677888887666677777778899855999999999999999999999999 6 8999999999999997 88 9
Q ss_pred EEccCCCCCCCCCchHHHHHHHHHH-CCCeEEEEecCHHHHhcc------cEEEEecCcceeEEeEEEeECCeEEEcC-C
Q 025084 154 ISTPAIKGTILPGITRKSIIDVAQS-QGFQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKRVSYG-E 225 (258)
Q Consensus 154 l~TP~~~~~iL~Gitr~~ll~~~~~-~g~~v~e~~i~~~eL~~a------devfl~ns~~gi~pV~~I~~~~~~i~~~-~ 225 (258)
|+||+++.++||||||+.||++|++ .|++|+|++++++||.+| ||+|+|||+++|+||.+|++.++.+.++ +
T Consensus 276 l~TP~l~~~iL~GITR~~vl~la~~~~G~~V~Er~i~~~eL~~A~~~g~~dEvF~tgTa~~i~PV~~I~~~~~~~~~~~~ 355 (386)
T 2coi_A 276 LATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTM 355 (386)
T ss_dssp EEECCCSSSSCCCHHHHHHHHHHHHHCSSEEEECCCBHHHHHHHHTTTCEEEEEEEETTTEEEEEEEEEESSSEEECGGG
T ss_pred EEECCCCCCccHHHHHHHHHHHHHhccCCcEEEEECCHHHHHHHHhcCCccEEEEecceeEEEEEEEEeeCCeEEecCCC
Confidence 9999999899999999999999999 899999999999999999 9999999999999999997668887543 4
Q ss_pred CCccHHHHHHHHHHHHhHhcCCCCCCCCeeeCC
Q 025084 226 GGFGAVSQQLYSVLTQLQMGLIADKMNWTLELS 258 (258)
Q Consensus 226 g~~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
|.+||++++|+++|.+++.|+.+ .+|+.+|+
T Consensus 356 g~~g~vt~~L~~~l~~iq~g~~~--~~W~~~v~ 386 (386)
T 2coi_A 356 ENGPKLASRILSKLTDIQYGREE--RDWTIVLS 386 (386)
T ss_dssp GGTTHHHHHHHHHHHHHHTTSSC--CTTEEEC-
T ss_pred CCcCHHHHHHHHHHHHHhCCCCC--CCCeEeCC
Confidence 56899999999999999999887 48999986
No 9
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=5.6e-51 Score=363.14 Aligned_cols=243 Identities=32% Similarity=0.403 Sum_probs=212.0
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (258)
+||.+||+.|+|+.| +.++|.+.+.+++++++. +..|||++++++++.+|+.|. ..++++|.+.|++.++
T Consensus 58 ~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~ 130 (308)
T 2eiy_A 58 KRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYL 130 (308)
T ss_dssp HHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC----
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccC
Confidence 599999999999987 999999999999998863 467999988776666777654 4688999999987654
Q ss_pred cCC--cccEEEEeecceeecCCCC-CCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEE
Q 025084 78 KEG--IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVI 154 (258)
Q Consensus 78 ~~g--~~~~~l~~~~~~~r~~~~~-~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l 154 (258)
..+ ..++++.+.+ +.|..++. ++++||++||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|
T Consensus 131 ~~~~~~~gv~l~~~~-~~r~~~~~~~~~~Kt~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l 207 (308)
T 2eiy_A 131 GEEAVRKGARLITSS-WARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSGENLFFVRDGVI 207 (308)
T ss_dssp ----CCSCEEEEECS-SCBCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEEBT--TSSEEEESSCEEEEEETTEE
T ss_pred CcccccCCeEEEEec-ceecCCCCcCcceehhhhHHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCceEEEEEECCEE
Confidence 322 2456777654 56777764 589999866999999999999999999999997 89999999999999999999
Q ss_pred EccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHH
Q 025084 155 STPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQ 234 (258)
Q Consensus 155 ~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~ 234 (258)
+||+++. +|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||++| |++.+ ++|.+||++++
T Consensus 208 ~TP~~~~-iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~pV~~i--d~~~~--~~g~~g~~~~~ 282 (308)
T 2eiy_A 208 YALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMI--DWRPI--GKGTAGPVALR 282 (308)
T ss_dssp EEECCTT-SCCCHHHHHHHHHHHHTTCCEEEECCCHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--TTSSCCHHHHH
T ss_pred EeCCcCC-CCchHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEccCcceEEEEEEE--cCEEC--CCCCCCHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 68876 78889999999
Q ss_pred HHHHHHHhHhcCCCCCCCCeeeCC
Q 025084 235 LYSVLTQLQMGLIADKMNWTLELS 258 (258)
Q Consensus 235 L~~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
|+++|.+++.|+.+++.+|+.+|.
T Consensus 283 l~~~~~~~~~~~~~~~~~w~~~v~ 306 (308)
T 2eiy_A 283 LREVYLEAVTGRRPEYEGWLTYVN 306 (308)
T ss_dssp HHHHHHHHHTTCCGGGGGGEEECC
T ss_pred HHHHHHHHHcCCCCCccCCCeeCC
Confidence 999999999999999999999873
No 10
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=3.8e-47 Score=333.58 Aligned_cols=221 Identities=24% Similarity=0.313 Sum_probs=187.5
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcC-C--CCCeEEEEEEEecCcc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLA-P--APEYTFLIYVSPVGNY 76 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~-~--~~~~~~~i~~~p~~~~ 76 (258)
+||.+||+.|+|+.| +.++|.+.+.+++++|+. .++ +||+.++.+.+.+++. | ...|+++|++.|++.+
T Consensus 49 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~li~~n~~-----~~~--~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~p~~~~ 121 (277)
T 3daa_A 49 DRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL-----NTG--HIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRP 121 (277)
T ss_dssp HHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTC-----CSE--EEEEEEESCBCSCCSSCCSSCCCCEEEEEEEECCCC
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC-----CcE--EEEEEEEecCCCcCCCCCCCCCCcEEEEEEEECCCC
Confidence 599999999999987 999999999999999874 234 5555554333334443 2 3468999999998743
Q ss_pred ---ccCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCE
Q 025084 77 ---FKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV 153 (258)
Q Consensus 77 ---~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~ 153 (258)
+.+| +++.+.++ .| +.++++||+ ||+.+++++++|+++|+||+||+| +|+|+|++++|||+++||+
T Consensus 122 ~~~~~~g---v~~~~~~~-~r---~~~~~~Kt~-nyl~~~la~~eA~~~g~~e~l~l~---~g~v~E~~~sNif~~~~~~ 190 (277)
T 3daa_A 122 LENLEKG---VKATFVED-IR---WLRCDIKSL-NLLGAVLAKQEAHEKGCYEAILHR---NNTVTEGSSSNVFGIKDGI 190 (277)
T ss_dssp HHHHHHC---EEEEEEEC-CC---CSCTTSCBS-CCHHHHHHHHHHHHTTCSEEEEEE---TTEEEEETTBEEEEEETTE
T ss_pred hHHHhCC---eEEEEecC-cc---ccCCCcchh-hhHHHHHHHHHHHHCCCCEEEEEc---CCEEEEcCceEEEEEECCE
Confidence 2334 44544432 22 346899996 999999999999999999999996 7999999999999999999
Q ss_pred EEccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHH
Q 025084 154 ISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQ 233 (258)
Q Consensus 154 l~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~ 233 (258)
|+|||++.++|+||||+.++++|+++|++++|++++++||.+|||+|+|||++||+||++| |++.+ ++|.+||+++
T Consensus 191 l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~e~~i~~~el~~adevf~~ns~~~i~pV~~i--d~~~~--~~g~~g~~t~ 266 (277)
T 3daa_A 191 LYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI--DGKLI--RDGKVGEWTR 266 (277)
T ss_dssp EEECCSSTTSCCCHHHHHHHHHHHHTTCCEECCCCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEES--TTSSCCHHHH
T ss_pred EECCCCcCCCCccHHHHHHHHHHHHcCCeEEEEeCCHHHHHhcCeeeeecChhhEEEEEEE--CCEEC--CCCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 78875 8888999999
Q ss_pred HHHHHHHHhH
Q 025084 234 QLYSVLTQLQ 243 (258)
Q Consensus 234 ~L~~~~~~~~ 243 (258)
+|+++|.+.+
T Consensus 267 ~L~~~~~~~i 276 (277)
T 3daa_A 267 KLQKQFETKI 276 (277)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 11
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=2.2e-46 Score=327.47 Aligned_cols=221 Identities=19% Similarity=0.252 Sum_probs=191.4
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCcccc
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFK 78 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~ 78 (258)
+||.+||+.|+|+.|+.++|.+.+.++++.+. +.|||+.++++.+.+|+.|+ ..|+++|.+.|++.++.
T Consensus 44 ~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~~~~---------~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~ 114 (269)
T 1i2k_A 44 QRLQDACQRLMISCDFWPQLEQEMKTLAAEQQ---------NGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYD 114 (269)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHC---------SEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCC---------CeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcch
Confidence 59999999999998889999999999998642 45888888766556777654 47889999999886432
Q ss_pred C-CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEcc
Q 025084 79 E-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (258)
Q Consensus 79 ~-g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP 157 (258)
. ...++++.+.+ .+|..+..+.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 115 ~~~~~g~~l~~~~-~~~~~~~~~~~~Kt~-n~~~~~~a~~~A~~~G~de~l~ld~--~G~v~E~s~sNif~v~~g~l~TP 190 (269)
T 1i2k_A 115 RLRNEGITLALSP-VRLGRNPHLAGIKHL-NRLEQVLIRSHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTP 190 (269)
T ss_dssp HHHHHCEEEEECS-CCBCCCTTTTBCCBS-CCHHHHHHHHHHTTSSCSEEEEEBT--TSBEEECSSSEEEEEETTEEEEE
T ss_pred hhhcCCeEEEEec-eecCCCCcccCcchh-hhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceEEEEEECCEEECC
Confidence 1 12346666653 556555568899996 8999999999999999999999997 89999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHH
Q 025084 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYS 237 (258)
Q Consensus 158 ~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~ 237 (258)
|++.++|+||||+.|+++|+++|++++|++++++||.+|||+|+|||++||+||++| |++.+ ++ ||++++|++
T Consensus 191 ~~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gv~pV~~i--d~~~~--~~---g~~~~~l~~ 263 (269)
T 1i2k_A 191 RLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCAC--GDVSF--SS---ATLYEYLAP 263 (269)
T ss_dssp CCSSSSBCCHHHHHHHHHHHHSSSEEEEECCBHHHHHTCSEEEEECSSSCEEEEEEE--TTEEC--CC---CHHHHHHHH
T ss_pred CCccCccCCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEcCChhheEEEEEE--CCEEe--cC---cHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 68876 53 799999999
Q ss_pred HHHH
Q 025084 238 VLTQ 241 (258)
Q Consensus 238 ~~~~ 241 (258)
+|..
T Consensus 264 ~~~~ 267 (269)
T 1i2k_A 264 LCER 267 (269)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9874
No 12
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=1.7e-46 Score=328.65 Aligned_cols=219 Identities=24% Similarity=0.311 Sum_probs=190.3
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCC--CeEEEEEEEecCccc
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAP--EYTFLIYVSPVGNYF 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~--~~~~~i~~~p~~~~~ 77 (258)
+||.+||+.|+|+.| +.++|.+.+.+++++|+. .+.+||+.++++.+.+|+.++. .|+++++ .|++..
T Consensus 48 ~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~-~p~~~~- 118 (272)
T 3lul_A 48 ERLGNSARQLGIPFEISFDDWFEHLIQKIQKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQT-FNYSIQ- 118 (272)
T ss_dssp HHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEEE-ECCCCC-
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEEE-ECCCCc-
Confidence 599999999999998 999999999999998863 4568888887665567776543 4677766 555421
Q ss_pred cCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEcc
Q 025084 78 KEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (258)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP 157 (258)
..++++.+. ++.|..+++++++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 119 ---~~~v~l~~~-~~~r~~~~~~~~~Kt~-nyl~~~la~~~A~~~G~de~L~ld~--~g~v~E~~~sNif~~~~g~l~TP 191 (272)
T 3lul_A 119 ---KHPVRLISI-NWLRDKANPLYQLKSV-NYLEAIIAQRQAIAVGADDALFFNT--ENHVTETTCANLFLIENNILYTP 191 (272)
T ss_dssp ---CSCEEEEEE-EEEECTTCGGGGSCBS-CCHHHHHHHHHHHHTTCSEEEEEET--TSBEEEESSCEEEEEETTEEEEC
T ss_pred ---cccEEEEEE-eEEecCCCcccchhhh-ccHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCCeEEEEEECCEEECC
Confidence 123666654 5778777778999996 9999999999999999999999997 89999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHH
Q 025084 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYS 237 (258)
Q Consensus 158 ~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~ 237 (258)
|++.++|+||||+.|+++|+++|++++|++++++||.+|||+|+|||++||+||++| |++.+ ++ +++|++
T Consensus 192 ~l~~~iL~GitR~~ll~la~~~g~~v~e~~i~~~el~~adevf~~ns~~~v~PV~~i--d~~~~--~~------t~~l~~ 261 (272)
T 3lul_A 192 RVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSL--DNIIF--EV------NHPIID 261 (272)
T ss_dssp CGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--CC------CCHHHH
T ss_pred CCccCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEEcCchhEEEEEEE--CCEEc--ch------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 78876 43 889999
Q ss_pred HHHHhHhc
Q 025084 238 VLTQLQMG 245 (258)
Q Consensus 238 ~~~~~~~~ 245 (258)
+|.+.++.
T Consensus 262 ~y~~~~~~ 269 (272)
T 3lul_A 262 KLIFLLNQ 269 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987765
No 13
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=1e-45 Score=326.75 Aligned_cols=222 Identities=20% Similarity=0.249 Sum_probs=190.6
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCC--CCeEEEEEEEecCcccc
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFK 78 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~ 78 (258)
+||.+||+.|+|+.| .++|.+.+.++++... +.|||+.++++.+.+|+.|. ..|+++|.+.|++.++.
T Consensus 66 ~RL~~Sa~~l~~~~~-~~~l~~~i~~~v~~~~---------~~~iR~~v~rg~~~~g~~p~~~~~~~~~i~~~p~~~~~~ 135 (292)
T 2xpf_A 66 ARLEEGCRRLAIPLD-TAALRQELLAFCAALG---------DGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPE 135 (292)
T ss_dssp HHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHC---------SEEEEEEEECCBCCSSSSCCTTCCCEEEEEEECCCCCCH
T ss_pred HHHHHHHHhcCCCCC-HHHHHHHHHHHHHhCC---------CcEEEEEEEecCCCCCCCCCCCCCcEEEEEEEECCccch
Confidence 599999999999997 8899999999998732 35888888755446777664 36889999999886541
Q ss_pred C-CcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEcc
Q 025084 79 E-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (258)
Q Consensus 79 ~-g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP 157 (258)
. ...++++.+.+ ..|..+..+.++|++ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 136 ~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~la~~~A~~~G~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TP 211 (292)
T 2xpf_A 136 RHWQQGVRLFACR-TRLAEQPLLAGLKHL-NRLEQVLARAEWSDAGHAEGLMLDV--HERVVEGVFSNLLLVLDGTLVAP 211 (292)
T ss_dssp HHHHTCEEEEECC-CCBCCCTTTTBCCBS-CCHHHHHHHTTCCCTTCSEEEEEBT--TCCEEEESSSEEEEEETTEEEEE
T ss_pred hhccCCeEEEEee-eeccCCCCCCCcchh-hhHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEEeC
Confidence 1 12346666654 345555557899996 8999999999999999999999997 89999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHH
Q 025084 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYS 237 (258)
Q Consensus 158 ~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~ 237 (258)
|++.++|+||||+.|+++|+++|++++|++++++||.+|||+|+|||++||+||++| |++.+ + +||++++|++
T Consensus 212 pl~~~iL~GitR~~vl~~a~~~G~~v~E~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~--~---~g~~t~~l~~ 284 (292)
T 2xpf_A 212 DLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRAL--DEHVW--P---VGELTRKLQD 284 (292)
T ss_dssp CCSSSSBCCHHHHHHHHHHHHTTCCEEEECBCHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--C---CCHHHHHHHH
T ss_pred CCCCccCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCEEEEEcCcccEEEEEEE--CCEEe--C---CCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 68875 4 6899999999
Q ss_pred HHHHhH
Q 025084 238 VLTQLQ 243 (258)
Q Consensus 238 ~~~~~~ 243 (258)
+|.+.+
T Consensus 285 ~~~~~~ 290 (292)
T 2xpf_A 285 QLRDDL 290 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 14
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=100.00 E-value=8e-45 Score=320.08 Aligned_cols=221 Identities=27% Similarity=0.344 Sum_probs=188.4
Q ss_pred ChHHhHHhhCCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccC
Q 025084 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (258)
+||.+||+.|+|+.| +.++|.+.+.++++.++ +..|||+++. .. + .+++|++.|++.++
T Consensus 61 ~RL~~Sa~~l~~~~p~~~~~l~~~i~~~~~~~~--------~~~~iR~~v~-~~---~------~~~~i~~~p~~~~~-- 120 (285)
T 3csw_A 61 TRLKRSADFFNLPLSLSFDEFTKVLKAGADEFK--------QEVRIKVYLF-PD---S------GEVLFVFSPLNIPD-- 120 (285)
T ss_dssp HHHHHHHHTTTCCCSSCHHHHHHHHHHHHTTCS--------SCEEEEEEEC-TT---T------CCEEEEEEECCCCC--
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhC--------CCeEEEEEEE-cC---C------CEEEEEEEeCCCcc--
Confidence 599999999999987 99999999999998653 3469998772 11 1 15778889887654
Q ss_pred CcccEEEEeecceeecCCCC-CCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEccC
Q 025084 80 GIAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPA 158 (258)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~-~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~TP~ 158 (258)
...++++.+.+ +++..... +.++|++ ||+.+++++++|++ +||+||+|+ +|+|+|++++|||+++||+|+||+
T Consensus 121 ~~~~~~l~~~~-~~~~~~~~~~~~~Kt~-~~l~~~la~~~A~~--~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TP~ 194 (285)
T 3csw_A 121 LETGVEVKISN-VRRIPDLSTPPALKIT-GRTDIVLARREIVD--CYDVILLGL--NGQVCEGSFSNVFLVKEGKLITPS 194 (285)
T ss_dssp CTTCEEEEECS-SCCCCTTTSCTTCCBT-TCHHHHHHHTTCSS--SSEEEEECT--TSBEEEESSSEEEEEETTEEEEEC
T ss_pred ccCCeEEEEEe-EEecCCCCCCCccchh-ccHHHHHHHHHHHh--CCeEEEECC--CCcEEEcCceEEEEEECCEEEeCC
Confidence 12345666643 44433332 4699998 69999999988876 999999997 899999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHH
Q 025084 159 IKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSV 238 (258)
Q Consensus 159 ~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~ 238 (258)
++.++|+||||+.|+++++++|++++|++++++||.+|||+|+|||++||+||++| |++.+ ++|.+||++++|+++
T Consensus 195 l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~PV~~i--d~~~~--~~g~~g~~t~~L~~~ 270 (285)
T 3csw_A 195 LDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAGVVPVRRL--NEHSF--FEEEPGPVTATLMEN 270 (285)
T ss_dssp GGGTCCCCHHHHHHHHHHHHTTCCEEEECCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEES--CSSSCCHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEecCcceEEEEEEE--CCEEC--CCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 78876 788899999999999
Q ss_pred HHHhHhcCCCCCCCCe
Q 025084 239 LTQLQMGLIADKMNWT 254 (258)
Q Consensus 239 ~~~~~~~~~~~~~~~~ 254 (258)
|.+++.|.. .+|+
T Consensus 271 ~~~~~~~~~---~~w~ 283 (285)
T 3csw_A 271 FEPFVLNLE---ENWV 283 (285)
T ss_dssp HHHHHHTCG---GGTT
T ss_pred HHHHHhCcC---CCCC
Confidence 999999976 5675
No 15
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.5e-44 Score=322.01 Aligned_cols=221 Identities=23% Similarity=0.360 Sum_probs=154.3
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccc---
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYF--- 77 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~--- 77 (258)
+||.+||+.|+|+.|+.++|.+.+.++++++.. ..+.++.|||++++++.+.+| .|++++++.|++.++
T Consensus 68 ~RL~~Sa~~L~i~~p~~~~l~~~i~~~v~~~~~---~n~~~~~~iRl~vtrG~~~~g-----~p~~~v~~~p~~~~~~~~ 139 (315)
T 3sno_A 68 ERFKASAALLGLPEPILEDWEKATQMGIESWYS---HPNAGEASCTWTLSRGRSSTG-----LASGWLTITPVSSDKLAQ 139 (315)
T ss_dssp HHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT---C--CCCEEEEEEEECCBTTTC-----CCEEEEEEEECCHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhcc---cCCCCCEEEEEEEEeCCCCCC-----CCEEEEEEEECCCcchhh
Confidence 599999999999998899999999999997321 001246799988876544343 368888899887543
Q ss_pred -cCCcccEEEEeecc-e---------------------eecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCC
Q 025084 78 -KEGIAPINLVVEHE-L---------------------HRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVH 134 (258)
Q Consensus 78 -~~g~~~~~l~~~~~-~---------------------~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~ 134 (258)
.+|+ ++.+.+. + .+..|+.++++||+ ||+.+++++++|+++|+||+||+|+
T Consensus 140 ~~~gv---~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~~~~~p~~l~~~Kt~-nyl~~vla~~~A~~~G~de~l~l~~-- 213 (315)
T 3sno_A 140 REHGV---SVMTSSRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTDG-- 213 (315)
T ss_dssp HHHCE---EEEEEEC------------------------------------------------------CEEEEEEET--
T ss_pred hcCCE---EEEEeccccccccccccccccccccccccccccCcccccCcchh-ccHHHHHHHHHHHHcCCCEEEEEeC--
Confidence 3444 3333321 0 01234457899997 9999999999999999999999997
Q ss_pred CceEEEcCceeEEEEECCEEEccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEE
Q 025084 135 KRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214 (258)
Q Consensus 135 ~g~v~E~t~sNvf~~~~g~l~TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I 214 (258)
+| |+|++++|||+++||+|+|||++.++|+||||+.|+++++++|++++|+.++++||.+|||+|+|||++||+||++|
T Consensus 214 ~G-v~E~s~sN~f~~~~g~l~TPp~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfl~ns~~gv~pV~~i 292 (315)
T 3sno_A 214 DR-VLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRL 292 (315)
T ss_dssp TE-EEEESSSEEEEEETTEEEEECCC------HHHHHHHHHHHHTTCEEEEECCBHHHHHHSSEEEEEETTTEEEEEEEE
T ss_pred CC-cEEcCCeeEEEEECCEEEcCCCCCCcChhHHHHHHHHHHHHcCCEEEEEECCHHHHHhCCeeEEEcCcccEEEEEEE
Confidence 89 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eECCeEEEcCCCCccHHHHHHHHHHHHhH
Q 025084 215 TYLGKRVSYGEGGFGAVSQQLYSVLTQLQ 243 (258)
Q Consensus 215 ~~~~~~i~~~~g~~g~~~~~L~~~~~~~~ 243 (258)
|++.+ + .++++++|+++|.+.+
T Consensus 293 --d~~~~--~---~~~~~~~l~~~~~~~~ 314 (315)
T 3sno_A 293 --DGHKL--R---KPDNEKEIKALITKAL 314 (315)
T ss_dssp --SSSCC--C---CCTTHHHHHHHHHHHT
T ss_pred --CCEEC--C---CChHHHHHHHHHHHhh
Confidence 68876 4 5789999999998754
No 16
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=100.00 E-value=4.6e-39 Score=277.71 Aligned_cols=181 Identities=24% Similarity=0.289 Sum_probs=153.6
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHc-cCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecC----c
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLAN-KRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVG----N 75 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~----~ 75 (258)
+||.+||+.|+|+.|..++|.+.+.++++.| + .+..|||++++++++.+++ .|.+ .
T Consensus 43 ~RL~~Sa~~l~~~~p~~~~l~~~i~~~~~~~~~-------~~~~~vR~~v~~g~~~~~~------------~p~~~~~~~ 103 (246)
T 2zgi_A 43 ARLRRHALALGLSYPGDEAFLEDLEALLRAFPK-------APCLRLRFTVGEGVRLSEA------------RPYAPLPLS 103 (246)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHTTSCTT-------CSEEEEEEEEETTEEEEEE------------EECCCCCTH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCC-------CCCEEEEEEEECCCCccCc------------CcCCCCchh
Confidence 5999999999999873388999999998876 3 2568999988755433332 2322 1
Q ss_pred cccCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEE
Q 025084 76 YFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS 155 (258)
Q Consensus 76 ~~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~ 155 (258)
++..| +++.+.+ . |..|+ +.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+
T Consensus 104 ~~~~g---~~l~~~~-~-r~~~~-~~~~Kt~-n~~~~~~a~~~A~~~g~de~l~ld~--~G~v~Egs~sNif~v~~g~l~ 174 (246)
T 2zgi_A 104 LYREG---VRVRLTG-Y-RVHPD-LARYKTG-NYLPYRLALEEARKEGAFEGLLLDA--FGHVVDGSRTSPLLFREGTLY 174 (246)
T ss_dssp HHHHC---BCEEEEE-E-ECCTT-TTTSCBS-CCHHHHHHHHHHHTTTCSEEEEECT--TSCEEEESSSEEEEEETTEEE
T ss_pred HhhcC---eEEEEec-c-cCCCC-Cccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEE
Confidence 22334 4455544 4 77777 7899997 8999999999999999999999997 899999999999999999999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEE
Q 025084 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214 (258)
Q Consensus 156 TP~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I 214 (258)
|| .++|+||||+.|+++|+++|++++|++++++||.+ |+|+|||++||+||++|
T Consensus 175 TP---~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~--evfltns~~gi~pV~~i 228 (246)
T 2zgi_A 175 LL---EGGLEGITREKVAEAARGLGLRVERGLFRPEGLRG--HLLLAGSGVGLLPVRPP 228 (246)
T ss_dssp EE---CSSCCCHHHHHHHHHHHHTTCEEEEECCCGGGCCS--EEEEEETTTEEEEBSSC
T ss_pred CC---CCccCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHh--hHeeecChhheEEEEEE
Confidence 99 68999999999999999999999999999999998 99999999999999998
No 17
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=100.00 E-value=2.5e-38 Score=268.96 Aligned_cols=182 Identities=18% Similarity=0.213 Sum_probs=156.9
Q ss_pred ChHHhHHhhCCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCccccCC
Q 025084 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (258)
Q Consensus 1 ~RL~~Sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (258)
+||.+||+.|+|++ +.+++.+.+.++++ ++ .+.+|||+++.+++ .+.|.+.|++.++..
T Consensus 38 ~RL~~Sa~~l~~~~-~~~~l~~~i~~~~~-~~-------~~~~~iR~~~~~~g-----------~~~i~~~p~~~~~~~- 96 (221)
T 3qqm_A 38 ARLYGSAAELGFAC-DPQRIAEVLSDALD-GA-------RTAMRTRLALARNG-----------DATASAQPYEPLAAD- 96 (221)
T ss_dssp HHHHHHHHHHTCCC-CHHHHHHHHHHHHT-TC-------CSCEEEEEEEETTS-----------CEEEEEEECCCCCTT-
T ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cC-------CCCEEEEEEEEcCC-----------CEEEEEEcCCCCCCC-
Confidence 59999999999997 68899999999986 43 35689998876432 366788888765421
Q ss_pred cccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEEC-CEEEccCC
Q 025084 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKG-NVISTPAI 159 (258)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~-g~l~TP~~ 159 (258)
.++++.+.+ .++..++.+.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++ |+|+|||+
T Consensus 97 -~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~~e~l~l~~--~g~v~E~s~sNif~~~~~~~l~TP~~ 171 (221)
T 3qqm_A 97 -KVWILRLAR-TRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQADEVLLANE--RGEICEGTITNVFADFGDGVLATPRL 171 (221)
T ss_dssp -CCEEEEECS-CCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTCSEEEEEBT--TSCEEEESSCEEEEECSSSCEEEECG
T ss_pred -CCEEEEEee-eEecCCCcchhchhc-chHHHHHHHHHHHhcCCcEEEEECC--CCeEEEcCceeEEEEeCCCEEECCCC
Confidence 345666654 456666778999996 9999999999999999999999997 89999999999999998 99999999
Q ss_pred CCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEE
Q 025084 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGS 213 (258)
Q Consensus 160 ~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~ 213 (258)
+.++|+||||+.+++.+ +++|++++++||.+|||+|+|||++||+||+-
T Consensus 172 ~~~~L~GitR~~ll~~~-----~v~e~~i~~~~L~~adevf~~ns~~gi~pV~l 220 (221)
T 3qqm_A 172 DCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLIPAKL 220 (221)
T ss_dssp GGTCCCCHHHHHHHHTT-----SEEEECCCHHHHTTCSEEEEEETTTEEEEEEE
T ss_pred ccCcchHHHHHHHHhhC-----cEEEEeCCHHHHHhCCEEEEEecceeEEEEEE
Confidence 99999999999999864 79999999999999999999999999999975
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=100.00 E-value=2e-33 Score=234.11 Aligned_cols=165 Identities=12% Similarity=0.145 Sum_probs=132.6
Q ss_pred ChHHhHH-hhCCCC--CC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEeecCCccCcCCCCCeEEEEEEEecCcc
Q 025084 1 MRMQVGA-ERMCMP--SP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNY 76 (258)
Q Consensus 1 ~RL~~Sa-~~l~i~--~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~ 76 (258)
+||.+|| +.|+|+ .| +.++|.+.+. ++++++ .+.+|||+++..+. ..+...|+++
T Consensus 26 ~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~~iR~~~~~g~------------~~~~~~p~~~- 84 (194)
T 3ceb_A 26 QRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHR-------EGLIRCRIDYNHHD------------YVLQCFPYQQ- 84 (194)
T ss_dssp HHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCS-------SSEEEEEEEECSSC------------EEEEEEEECC-
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCC-------CCCEEEEEEEeCCc------------cEEEEecCCC-
Confidence 5999999 999999 66 8999999888 877664 35789998775431 1123334322
Q ss_pred ccCCcccEEEEeecceeecCCCCCCCCccccchHhHHHHHHHHHHCCCCeEEEEecCCCceEEEcCceeEEEEECCEEEc
Q 025084 77 FKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156 (258)
Q Consensus 77 ~~~g~~~~~l~~~~~~~r~~~~~~~~~Kt~~~y~~~~~a~~ea~~~g~dd~l~ld~~~~g~v~E~t~sNvf~~~~g~l~T 156 (258)
.++.... ....++.+.++||+ ||+ ++++.+|+++|+||+||+ + +|+|+|++++|||+++||+|+|
T Consensus 85 --~~~~~~~-------~~~~~~~~~~~Kt~-n~~--~~~~~~A~~~g~de~l~l-~--~G~v~E~s~sNif~~~~g~l~T 149 (194)
T 3ceb_A 85 --KVYRTFK-------PVFCDHIDYSLKFS-DRT--LLNNLLKQKEECDEIMII-R--QGKVTDCSIGNLIFRQNNQWIT 149 (194)
T ss_dssp --CCCCCEE-------EEECSSCCCSSCBS-CCH--HHHHHHGGGTTSSEEEEE-E--TTEECCCSSSEEEEEETTEEEE
T ss_pred --CcEEEEE-------EecCCCcchhhccc-CHH--HHHHHHHhhCCCCEEEEE-e--CCEEEEeccEEEEEEECCEEEC
Confidence 1221111 11234457899996 788 668889999999999999 7 8999999999999999999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHCCCeEEEEecCHHHHhcccEEEEecCccee
Q 025084 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVV 208 (258)
Q Consensus 157 P~~~~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi 208 (258)
|+ .++|+||||+.|++ +++++|++++++||.+|||+|+|||++|+
T Consensus 150 P~--~~~L~GitR~~ll~-----~~~v~e~~i~~~eL~~adevfl~ns~~gi 194 (194)
T 3ceb_A 150 PD--KPLLEGTQRAKLLE-----QKKIIAREIFFEDLAQYEEIRLINAMNGL 194 (194)
T ss_dssp ES--SCSSCCHHHHHHHH-----TTSSEEECCBGGGGGGCSCEEEEBTTBCC
T ss_pred CC--CCCcChHHHHHHHc-----CCCEEEecCCHHHHhhccEEEEEecccCC
Confidence 99 68999999999998 57999999999999999999999999986
No 19
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=49.26 E-value=22 Score=25.84 Aligned_cols=44 Identities=11% Similarity=0.247 Sum_probs=32.1
Q ss_pred CCCCCch-HHHHHHHHHHCCCeEEE---------EecCHHHHhcccEEEEecCc
Q 025084 162 TILPGIT-RKSIIDVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 205 (258)
Q Consensus 162 ~iL~Git-r~~ll~~~~~~g~~v~e---------~~i~~~eL~~adevfl~ns~ 205 (258)
|+-...+ .+.|.+.|+++|+.+.. ..++.+|+..||-+++.+..
T Consensus 17 GiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 17 GLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 3333333 34444678899997764 37999999999999999885
No 20
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=36.21 E-value=37 Score=24.40 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCCCCchHHHHH-HHHHHCCCeEEE---------EecCHHHHhcccEEEEecCc
Q 025084 162 TILPGITRKSII-DVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 205 (258)
Q Consensus 162 ~iL~Gitr~~ll-~~~~~~g~~v~e---------~~i~~~eL~~adevfl~ns~ 205 (258)
|+-...+-...| +.++++|+.+.. ..++.+|+.+||-+++.+..
T Consensus 14 GiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r48_A 14 GIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADR 67 (106)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 444444544444 568889987654 36999999999999999885
No 21
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=34.72 E-value=3 Score=21.84 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=13.3
Q ss_pred CCCCCCCchHHHHHHHH
Q 025084 160 KGTILPGITRKSIIDVA 176 (258)
Q Consensus 160 ~~~iL~Gitr~~ll~~~ 176 (258)
...+|.|.|||-++.++
T Consensus 8 ~~CClsGCt~QDLL~lC 24 (26)
T 2h8b_A 8 RYCCLSGCTQQDLLTLC 24 (26)
T ss_dssp HHHHHTCBCHHHHHTTC
T ss_pred HHHHhcCCcHHHHHhhC
Confidence 34578999999988754
No 22
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=33.10 E-value=37 Score=24.41 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCCCCCchHHHHH-HHHHHCCCeEEE---------EecCHHHHhcccEEEEecCc
Q 025084 161 GTILPGITRKSII-DVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 205 (258)
Q Consensus 161 ~~iL~Gitr~~ll-~~~~~~g~~v~e---------~~i~~~eL~~adevfl~ns~ 205 (258)
.|+-...+-...| +.++++|+.+.. ..++.+|+.+||-+++.+..
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r4q_A 13 TGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK 67 (106)
T ss_dssp CC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 4566666655555 568889987654 36999999999999999885
No 23
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=32.69 E-value=21 Score=24.74 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=33.3
Q ss_pred HHHHHHHCCCeEEEEecCHHHHhcccEEEEecCcceeEEeEEEeECCeEEEcCCCCccHHHHHHHHHHHH
Q 025084 172 IIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQ 241 (258)
Q Consensus 172 ll~~~~~~g~~v~e~~i~~~eL~~adevfl~ns~~gi~pV~~I~~~~~~i~~~~g~~g~~~~~L~~~~~~ 241 (258)
..+++++.|++.++..+.-+.- ..+++.-.+.-..-+|+.-|. ||+.+ .|+-...|.+++.+
T Consensus 20 aK~~L~~~gi~y~~idi~~d~~-~~~~~~~~~~G~~tVP~I~i~-Dg~~l------~~~~~~el~~~L~e 81 (92)
T 2lqo_A 20 LKTALTANRIAYDEVDIEHNRA-AAEFVGSVNGGNRTVPTVKFA-DGSTL------TNPSADEVKAKLVK 81 (92)
T ss_dssp HHHHHHHTTCCCEEEETTTCHH-HHHHHHHHSSSSSCSCEEEET-TSCEE------ESCCHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEcCCCHH-HHHHHHHHcCCCCEeCEEEEe-CCEEE------eCCCHHHHHHHHHH
Confidence 3455677899999999974322 122322222223346887663 55654 12323455555555
No 24
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=31.35 E-value=64 Score=23.13 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=32.2
Q ss_pred CCCCCch-HHHHHHHHHHCCCeEEE---------EecCHHHHhcccEEEEecCc
Q 025084 162 TILPGIT-RKSIIDVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 205 (258)
Q Consensus 162 ~iL~Git-r~~ll~~~~~~g~~v~e---------~~i~~~eL~~adevfl~ns~ 205 (258)
|+=...+ -+.|.+.|+++|+++.- ..++.+++.+||-+++....
T Consensus 14 GiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~ 67 (106)
T 2m1z_A 14 GVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDT 67 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccc
Confidence 4444444 45566788899987653 35788999999999999875
No 25
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.11 E-value=31 Score=22.31 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=20.8
Q ss_pred CCccHHHHHHHHHHHHhHhcCCCC
Q 025084 226 GGFGAVSQQLYSVLTQLQMGLIAD 249 (258)
Q Consensus 226 g~~g~~~~~L~~~~~~~~~~~~~~ 249 (258)
+..+.|..+|+.+|.+++...++|
T Consensus 23 ~~~~~Ig~~LR~~Yd~vv~E~VPD 46 (62)
T 2lfw_B 23 SKDRDMGAALRSAYQKTIEEQVPD 46 (62)
T ss_dssp SSSTTHHHHHHHHHHTTTSSCCCC
T ss_pred ChHHHHHHHHHHHHHHHhccCCCH
Confidence 335679999999999999998887
No 26
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=29.19 E-value=80 Score=20.04 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=26.6
Q ss_pred CCCCeEEEEecCCCceEEEc--------CceeEEEEECCEEEccCCCCCCCCCch
Q 025084 122 KGYSDVLYLDCVHKRYLEEV--------SSCNIFVVKGNVISTPAIKGTILPGIT 168 (258)
Q Consensus 122 ~g~dd~l~ld~~~~g~v~E~--------t~sNvf~~~~g~l~TP~~~~~iL~Git 168 (258)
.|.+|+-|+-. ||.|... ..+|-|.+.|.- -|-++ ..+||||-
T Consensus 5 ~gIeEVnmfk~--dg~vihF~nPkVqaS~~aNTfvv~G~~-e~K~l-~e~lP~Il 55 (58)
T 3mcb_B 5 SGIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHA-ETKQL-TEMLPSIL 55 (58)
T ss_dssp CCCCEEEEEET--TSEEEEEESCEEEEETTTTEEEEESCE-EEEEG-GGGTTGGG
T ss_pred CCeeEEEEEec--CCEEEEecCcceEEeeccceEEEecCC-eeeEH-HHHChhhh
Confidence 35667666654 6666554 568999997752 22233 34788874
No 27
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=25.11 E-value=74 Score=20.76 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=25.8
Q ss_pred CCCeEEEEecCCCceEEEc--------CceeEEEEECCEEEccCCCCCCCCCchHH
Q 025084 123 GYSDVLYLDCVHKRYLEEV--------SSCNIFVVKGNVISTPAIKGTILPGITRK 170 (258)
Q Consensus 123 g~dd~l~ld~~~~g~v~E~--------t~sNvf~~~~g~l~TP~~~~~iL~Gitr~ 170 (258)
|.+|+-|+-. ||.|... ..+|-|++.|.- -|-++ ..+||||--+
T Consensus 6 gIeEVnmfk~--dg~vihF~nPkVqaS~~aNT~vv~G~~-e~K~l-~ellP~Il~q 57 (66)
T 3lkx_A 6 GIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHA-ETKQL-TEMLPSILNQ 57 (66)
T ss_dssp CEEEEEEEET--TSEEEEEESCEEEEECC-CEEEEESCE-EEEEG-GGGTTGGGGG
T ss_pred CeeEEEEEec--CCEEEEecCcceEEeeccCeeEecCCC-EEeEH-HHHChhhhhc
Confidence 4556555544 5665554 569999998752 22244 3578888644
No 28
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=23.74 E-value=56 Score=23.14 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=47.7
Q ss_pred CCCCCCchHHHHHHHHHHCCCeEEEEecCHHHH----hcccEEEEecCcc-------e---eEEeEEEeECCeEEEcCCC
Q 025084 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEEL----LDADEVFCTGTAV-------V---VSPVGSITYLGKRVSYGEG 226 (258)
Q Consensus 161 ~~iL~Gitr~~ll~~~~~~g~~v~e~~i~~~eL----~~adevfl~ns~~-------g---i~pV~~I~~~~~~i~~~~g 226 (258)
.|+=-++.-+.+-+.+++.|++++-...+..++ ..+|=++++.-+. . =.||.-| +... |+.-
T Consensus 12 ~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv~~~~~~~~~~~~~~~v~vI--~~~~--yg~~ 87 (106)
T 1e2b_A 12 AGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVI--DSLL--YGKV 87 (106)
T ss_dssp SSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSSSSCCCBC--CHHH--HTTT
T ss_pred CchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccchhhhHHHHHHHhcCCCceEE--CHHH--ccCC
Confidence 455555666777788999999988887777765 4577555555444 1 1377777 4443 4543
Q ss_pred CccHHHHHHHHHHH
Q 025084 227 GFGAVSQQLYSVLT 240 (258)
Q Consensus 227 ~~g~~~~~L~~~~~ 240 (258)
+...+..++.+++.
T Consensus 88 ~g~~vl~~~~~~l~ 101 (106)
T 1e2b_A 88 DGLGVLKAAVAAIK 101 (106)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 34556666666654
No 29
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.68 E-value=1.5e+02 Score=20.89 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=30.9
Q ss_pred CCchHHHHHHHHH---HCCCeEEEEecC---HHHHhcccEEEEecCcc
Q 025084 165 PGITRKSIIDVAQ---SQGFQVEERLVT---VEELLDADEVFCTGTAV 206 (258)
Q Consensus 165 ~Gitr~~ll~~~~---~~g~~v~e~~i~---~~eL~~adevfl~ns~~ 206 (258)
-|-|++..-.+++ +.|.+++.-.+. .+++.++|.+++..++.
T Consensus 10 tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y 57 (137)
T 2fz5_A 10 TGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAM 57 (137)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCB
T ss_pred CChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEcccc
Confidence 4888877665544 457877766654 67889999999988874
No 30
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=21.78 E-value=98 Score=23.04 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=35.5
Q ss_pred CCchHHHHHHHHHHCCCeEEEEec---CHHHHhcccEEEEecCcc--eeEEe
Q 025084 165 PGITRKSIIDVAQSQGFQVEERLV---TVEELLDADEVFCTGTAV--VVSPV 211 (258)
Q Consensus 165 ~Gitr~~ll~~~~~~g~~v~e~~i---~~~eL~~adevfl~ns~~--gi~pV 211 (258)
-|.|++..-.+++.+|. ++..++ ..+++.++|-+++..++. |..|-
T Consensus 12 tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p~ 62 (164)
T 2bmv_A 12 SGNAEAIAEKISKAIGN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQT 62 (164)
T ss_dssp SSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEECH
T ss_pred CchHHHHHHHHHHHcCC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCcH
Confidence 49999999889988887 665555 466888899998887775 56663
Done!