RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 025084
(258 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 554 bits (1428), Expect = 0.0
Identities = 231/258 (89%), Positives = 246/258 (95%)
Query: 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
+RM+ GAERMCMP+P+VEQFVEAVK TVLANKRW+PP GKGSLYIRPLLMGSGAVLGLAP
Sbjct: 146 IRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAP 205
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEYTFLIYVSPVGNYFKEG+APINL+VE+E HRATPGGTGGVKTIGNYAAVLKAQS AK
Sbjct: 206 APEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAK 265
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
AKGYSDVLYLDCVHK+YLEEVSSCNIF+VK NVISTPAIKGTILPGITRKSIIDVA+SQG
Sbjct: 266 AKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQG 325
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLT 240
FQVEER VTV+ELL+ADEVFCTGTAVVVSPVGSITY GKRVSYGEGGFG VSQQLY+VLT
Sbjct: 326 FQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLT 385
Query: 241 QLQMGLIADKMNWTLELS 258
LQMGLI D MNWT+ELS
Sbjct: 386 SLQMGLIEDNMNWTVELS 403
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 351 bits (901), Expect = e-121
Identities = 173/258 (67%), Positives = 208/258 (80%), Gaps = 1/258 (0%)
Query: 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
+RM++GAERM MPSPSV+QFV AVK T LANKRW+PP+GKG+LYIRPLLMGSG +LGL P
Sbjct: 132 IRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGP 191
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEYTF++Y SPVGNYFKEG+A +NL VE E RA PGG GGVK+I NYA VLKA S AK
Sbjct: 192 APEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAK 251
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
++G+SDVLYLD V K+YLEE SSCN+FVVKG ISTPA GTIL GITRKS++++A QG
Sbjct: 252 SRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQG 311
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLT 240
+QV E+ V V+E++DADEVFCTGTAVVV+PVG+ITY KRV Y G +V Q+L SVL
Sbjct: 312 YQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYKTGD-ESVCQKLRSVLV 370
Query: 241 QLQMGLIADKMNWTLELS 258
+Q GLI D W +++
Sbjct: 371 GIQTGLIEDNKGWVTDIN 388
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 349 bits (899), Expect = e-121
Identities = 117/263 (44%), Positives = 159/263 (60%), Gaps = 7/263 (2%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG-SLYIRPLLMGSGAVLGLAP 60
R+Q A+R+ MP E F+EAVK V A++ W+PP G+G SLY+RP ++ + LG+ P
Sbjct: 93 RLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKP 152
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
A EY F + SPVG YFK G+ P+++ V E RA PGGTG K GNYAA L AQ+ AK
Sbjct: 153 AEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAK 212
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
KG VLYLD V Y+EEV N F + + TP + G+ILPGITR S++ +A+ G
Sbjct: 213 EKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDSLLQLAEDLG 272
Query: 181 FQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQ 234
VEER V+++E E F GTA V++P+G I Y K G+G G V+Q+
Sbjct: 273 LTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKEFVIGDGEVGPVTQK 332
Query: 235 LYSVLTQLQMGLIADKMNWTLEL 257
LY LT +Q G + D W +++
Sbjct: 333 LYDELTGIQFGDVEDPHGWIVKV 355
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 346 bits (890), Expect = e-120
Identities = 154/257 (59%), Positives = 204/257 (79%), Gaps = 2/257 (0%)
Query: 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
+RMQ GA+R+CM PS+EQFVEAVK TVLANK+W+PP GKG+LYIRPLL+GSGAVLG+AP
Sbjct: 96 LRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAP 155
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEYTFLIY SPVGNY K + +NL V+H+ RA GGTGGVK+ NY+ V+K+ AK
Sbjct: 156 APEYTFLIYASPVGNYHKAS-SGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAK 214
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
+ G+SDVL+LD + +EE+S+CNIF++KGN++STP GTILPG+TRKSI ++A+ G
Sbjct: 215 SSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSGTILPGVTRKSISELARDIG 274
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLT 240
+QVEER V+V+ELL+A+EVFCTGTAVVV V ++T+ K+V Y G A+S +L+ +LT
Sbjct: 275 YQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKY-RTGEEALSTKLHLILT 333
Query: 241 QLQMGLIADKMNWTLEL 257
+QMG++ DK W +E+
Sbjct: 334 NIQMGVVEDKKGWMVEI 350
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 309 bits (794), Expect = e-106
Identities = 117/244 (47%), Positives = 155/244 (63%), Gaps = 4/244 (1%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R+ A R+ +P SVE+F++A+K V + W+P G SLYIRP + G+ LG++PA
Sbjct: 40 RLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPA 99
Query: 62 PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKA 121
EY F ++ SPVG YFK G ++ +V RA PGG G K GNYAA L AQ A
Sbjct: 100 LEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAE 158
Query: 122 KGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGF 181
KGY L+LD H Y+ EV + NIF VK + TP + G+ILPGITR SI+++A+ G
Sbjct: 159 KGYDQALWLDGAHG-YVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGI 217
Query: 182 QVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLTQ 241
+VEER +T +EL +ADEVF TGTA VV+PVG I Y GK GE G V+++LY +LT
Sbjct: 218 KVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEV--GPVTKKLYDLLTD 275
Query: 242 LQMG 245
+Q G
Sbjct: 276 IQYG 279
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 308 bits (790), Expect = e-105
Identities = 159/258 (61%), Positives = 194/258 (75%), Gaps = 1/258 (0%)
Query: 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
MRM++GAERMCM SPSV QF+E VK TVLAN+RW+PP GKGSLY+RPLL GSGA LG+A
Sbjct: 128 MRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAA 187
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEYTFL++ SPV NYFKEG A +NL VE + RA GGTGGVK I NY VL+ AK
Sbjct: 188 APEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAK 247
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
++G+SDVLYLD + +EEVS+ NIF+VKGN+I TPA GTIL GITRKSII++A G
Sbjct: 248 SRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLG 307
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSVLT 240
++VEER V VEEL +A+EVFCTGTA V+ VGSIT+ R Y G G V+QQL S+L
Sbjct: 308 YKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVGD-GIVTQQLRSILL 366
Query: 241 QLQMGLIADKMNWTLELS 258
+Q G I D +W L+++
Sbjct: 367 GIQTGSIQDTKDWVLQIA 384
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 270 bits (692), Expect = 9e-91
Identities = 120/262 (45%), Positives = 165/262 (62%), Gaps = 6/262 (2%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG-SLYIRPLLMGSGAVLGLAP 60
R++ A R+ MP E F+EA++ V ANK W+PP G G SLY+RP ++G+ LG+ P
Sbjct: 52 RLRRSARRLLMPELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRP 111
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEY F ++ SPVG YFK G+AP+++ V E RA PGGTG VK GNYAA L AQ+ A
Sbjct: 112 APEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAA 171
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-ISTPAIKGTILPGITRKSIIDVAQSQ 179
+G V+YLD V Y+EEV + N F + G+ + TP + G+ILPGITR S++ +A+
Sbjct: 172 EQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDL 231
Query: 180 GFQVEERLVTVEELLDADE----VFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQL 235
G +VEER + ++EL E VF GTA V++PVG I + GK V + G G V++ L
Sbjct: 232 GMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKAL 291
Query: 236 YSVLTQLQMGLIADKMNWTLEL 257
Y LT +Q G D W +E+
Sbjct: 292 YDELTDIQYGDFEDPYGWIVEV 313
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 227 bits (581), Expect = 1e-74
Identities = 99/241 (41%), Positives = 136/241 (56%), Gaps = 17/241 (7%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
R+ A+R+ +P P E+ EA+K V AN SLYIRPLL LG+AP
Sbjct: 30 RLNRSAKRLGLPIPYDREELREALKELVAANN-------GASLYIRPLLTRGVGGLGVAP 82
Query: 61 AP--EYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSA 118
P E TF+++ SPVG Y K G + L+ + RA PGGTG KT G + A+
Sbjct: 83 PPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAAPGGTGDAKT-GGNLNSVLAKQE 141
Query: 119 AKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQS 178
A G + L LD Y+ E S+ N+F+VK + TP + G ILPGITR S+I++A+
Sbjct: 142 AAEAGADEALLLDD--NGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKE 199
Query: 179 QGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSV 238
G +VEER ++++EL ADEVF TGTA V+PV I G G+G G V+++L +
Sbjct: 200 LGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGI----GDGKPGPVTRKLREL 255
Query: 239 L 239
L
Sbjct: 256 L 256
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 196 bits (501), Expect = 3e-62
Identities = 98/249 (39%), Positives = 139/249 (55%), Gaps = 18/249 (7%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R++ A+R+ +P P E+ +E + +LA +P LYIRPL+ G G LG+ A
Sbjct: 51 RLKRSAKRLGLPRPESEEEIELLIQLLLAKNNLVPG-----LYIRPLVRGGGGGLGVRDA 105
Query: 62 PEYTFLIYVSPVGNYFKEGIA--PINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAA 119
E T ++ SPVG Y K G + LV+ R P G G K GNY + + A+ A
Sbjct: 106 TEPTLIVAASPVGAYLKGGRLEKGVVLVISSP-VRRAPPGPGAAKKTGNYLSSVLAKREA 164
Query: 120 KAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-VISTPAIKGTILPGITRKSIIDVAQS 178
KA G + L LD Y+ E + N+F VKG+ V+ TP + G ILPGITR S++++A+
Sbjct: 165 KAAGADEALLLD--EDGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKE 222
Query: 179 QGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYSV 238
G VEER +T+E+L ADEVF T TA V+PVG I G+ G V+++L +
Sbjct: 223 LGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLI--DGRVGQPGP-----VTKKLREL 275
Query: 239 LTQLQMGLI 247
LT +Q G I
Sbjct: 276 LTDIQYGEI 284
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 140 bits (354), Expect = 6e-41
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 11/214 (5%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R++ A+ + S+E + ++ + AN GS +R L+ GL+P
Sbjct: 9 RLRRSAKALIGLPLSIEDLRKIIQELLEANGP------AGSGRLRILVSRGDGGRGLSPP 62
Query: 62 PEYTFLIYVSPVGNYFK-EGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
+I + + P G KT VL A AA+
Sbjct: 63 EGAIPIIVSLIALASSAPPRLLITVKLRLSS--YPVPRPLAGHKTTNYLDNVLAALRAAE 120
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
G+ D L LD + E S+ NIF+VKG + TP ++ ILPGITR++++D+A+ G
Sbjct: 121 RAGFDDALLLDE--DGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQALLDLAKELG 178
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+VEER +T+ +L +ADE F T + V+PV SI
Sbjct: 179 IEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 131 bits (333), Expect = 7e-37
Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 35/260 (13%)
Query: 7 AERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLL-MGSGAVLGLAPAPEY 64
A+ + M P SV++ +EA + V N S YIRPL+ +G LG+ P
Sbjct: 65 AKILRMEIPYSVDELMEAQREVVRKNNL-------KSAYIRPLVFVGDEG-LGVRP-HGL 115
Query: 65 T--FLIYVSPVGNY-----FKEGIAPINLVV----EHELHRATPGGTGGVKTIGNYAAVL 113
I P G Y ++GI + V H + P K GNY +
Sbjct: 116 PTDVAIAAWPWGAYLGEEALEKGI---RVKVSSWTRHA-PNSIPTR---AKASGNYLNSI 168
Query: 114 KAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSII 173
A++ A+ GY + L LD + Y+ E S NIF+V+ V+ TP + +IL GITR ++I
Sbjct: 169 LAKTEARRNGYDEALLLD--VEGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVI 226
Query: 174 DVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQ 233
+A+ G +V ER +T +EL ADEVF TGTA V+P+ + G G G +++
Sbjct: 227 TLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREV----DGRQIGNGKRGPITE 282
Query: 234 QLYSVLTQLQMGLIADKMNW 253
+L S + G +W
Sbjct: 283 KLQSAYFDIVRGRTEKYAHW 302
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 121 bits (305), Expect = 6e-33
Identities = 86/256 (33%), Positives = 121/256 (47%), Gaps = 26/256 (10%)
Query: 7 AERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYT 65
A+ M P S E+ +EA + T+ N S YIRPL+ LGL P Y
Sbjct: 56 AKIYRMEIPYSKEELMEATRETLRKN-------NLRSAYIRPLVFRGDGDLGLNPRAGYK 108
Query: 66 --FLIYVSPVGNYFKE-----GIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQS 117
+I P G Y E GI R P K GNY L A+S
Sbjct: 109 PDVIIAAWPWGAYLGEEALEKGIDAKVSSW----RRNAPNTIPTAAKAGGNYLNSLLAKS 164
Query: 118 AAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQ 177
A+ GY + + LD + Y+ E S NIF+VK V+ TP + +ILPGITR ++I +A+
Sbjct: 165 EARRHGYDEAILLD--VEGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAK 222
Query: 178 SQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYS 237
G +V E+ ++ EEL ADE F TGTA ++P+ + G+++ G G G V+++L
Sbjct: 223 ELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVD--GRKI--GNGRRGPVTKKLQE 278
Query: 238 VLTQLQMGLIADKMNW 253
L G D W
Sbjct: 279 AFFDLVTGGTEDYWGW 294
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 106 bits (268), Expect = 8e-28
Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 26/241 (10%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
R+ A+ + + P + E+ E ++ V N+ G+G +YI+ + G G P
Sbjct: 47 RLYRSAKELRIDIPYTREELKELIRELVAKNE-----GGEGDVYIQ-VTRGVGPRGHDFP 100
Query: 61 APEYTFLIYVS-----PVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKA 115
++ ++ P ++G+ I + L +K++ VL
Sbjct: 101 KCVKPTVVIITQPLPLPPAELLEKGVRVITVPDIRWLRCD-------IKSLNLLNNVLAK 153
Query: 116 QSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDV 175
Q AK G + + LD + E SS N+F+VK V+ TP + ILPGITR ++I++
Sbjct: 154 Q-EAKEAGADEAILLD--ADGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIEL 210
Query: 176 AQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQL 235
A+ G VEER ++EEL ADEVF T T V PV I G+ + G+G G V+++L
Sbjct: 211 AKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEID--GRPI--GDGKPGPVTKRL 266
Query: 236 Y 236
Sbjct: 267 R 267
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 94.3 bits (235), Expect = 6e-23
Identities = 45/97 (46%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 118 AAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQ 177
AA+AKGY+D L LD ++ Y+ E + NIF VK VI TP L GITR+++I++A+
Sbjct: 171 AAEAKGYADALMLD--YRGYVAEATGANIFFVKDGVIHTP-TPDCFLDGITRQTVIELAK 227
Query: 178 SQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+G +V ER + EEL E F TGTA V+PV I
Sbjct: 228 RRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEI 264
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 88.5 bits (220), Expect = 4e-21
Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 17/216 (7%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R++ A R+ +P P + + A+++ + AN G IR +L G AP+
Sbjct: 30 RLERSARRLGIPEPDLPRLRAALESLLAAND---IDEG----RIRLILSRGPGGRGYAPS 82
Query: 62 --PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYA-AVLKAQSA 118
P + V P ++ + G+K + NY VL A+
Sbjct: 83 VCPGPALYVSVIP---LPPAWRQDGVRLITCPVRLGEQPLLAGLKHL-NYLENVL-AKRE 137
Query: 119 AKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQS 178
A+ +G + L+LD + E ++ N+F VK + TP++ L GITR+ +I++A +
Sbjct: 138 ARDRGADEALFLDT--DGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAA 195
Query: 179 QGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+G+ V+ER + +E+LL ADE F T + + V+PV +I
Sbjct: 196 KGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAI 231
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 89.2 bits (222), Expect = 4e-21
Identities = 64/204 (31%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 16 SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP--APEYTFLIYVSPV 73
S E+ E V T+ N YIR ++ LGL P P+ T + P+
Sbjct: 67 SKEEMTEIVLETLRKN-------NLRDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPI 119
Query: 74 GNYFKE----GIAPINLVVEHELHRATPGGT--GGVKTIGNYAAVLKAQSAAKAKGYSDV 127
G Y E G+ I + R VK++ NY + A+ A G +
Sbjct: 120 GLYPGELYEKGLKVITVST-----RRNRPDALSPQVKSL-NYLNNILAKIEANLAGVDEA 173
Query: 128 LYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERL 187
+ L+ + Y+ E + NIF+VK + TP L GITR ++I++A+ G V E L
Sbjct: 174 IMLN--DEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREEL 231
Query: 188 VTVEELLDADEVFCTGTAVVVSPV 211
T+ +L ADEVF TGTA V PV
Sbjct: 232 FTLHDLYTADEVFLTGTAAEVIPV 255
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 86.5 bits (215), Expect = 4e-20
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 24/213 (11%)
Query: 7 AERMCM-PSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMG-SGAVLGLAPAPEY 64
AE + + P+ S E+ + + KR+ +LYIRP+ G G+AP PE
Sbjct: 61 AEALGLKPTVSAEEIEALAREGL---KRF---DPDTALYIRPMYWAEDGFASGVAPDPES 114
Query: 65 T---FLIYVSPVGNY--FKEGIAPINLVVEHELHRATPG-GTGGVKTIGNYAAVLKAQSA 118
T + +P+ F ++P R T K Y +A
Sbjct: 115 TRFALCLEEAPMPEPTGFSLTLSP--------FRRPTLEMAPTDAKAGCLYPNNARALRE 166
Query: 119 AKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQS 178
A+++G+ + L LD + + E ++ N+F+VK V+ TP GT L GITR+ +I + +
Sbjct: 167 ARSRGFDNALVLDMLGN--VAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLRE 224
Query: 179 QGFQVEERLVTVEELLDADEVFCTGTAVVVSPV 211
G V E +T E+ L+ADEVF TG V PV
Sbjct: 225 DGVTVVETTLTYEDFLEADEVFSTGNYSKVVPV 257
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 84.2 bits (209), Expect = 3e-19
Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 11/135 (8%)
Query: 103 VKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK--GNVISTPAIK 160
+K++G VL A+ AAK G + +D ++ E +S N ++V G +++ PA
Sbjct: 148 IKSVGLLPNVL-AKQAAKEAGAQEAWMVD---DGFVTEGASSNAWIVTKDGKLVTRPADN 203
Query: 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKR 220
ILPGITR ++ID+A+ G +VEER T++E A E F T + V PV I GK+
Sbjct: 204 F-ILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQID--GKQ 260
Query: 221 VSYGEGGFGAVSQQL 235
+ G G G ++++L
Sbjct: 261 I--GNGKPGPIAKRL 273
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 80.6 bits (199), Expect = 6e-18
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 103 VKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGT 162
+K++ VL Q A + Y +L+ + E SS N++ +K V+ T
Sbjct: 143 IKSLNLLGNVLAKQEAHEKGAYEAILHRGGT----VTEGSSSNVYGIKDGVLYTHPANNL 198
Query: 163 ILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVS 222
IL GITR I+ A+ G V+E T EELL+ADEVF + T ++PV I G+++
Sbjct: 199 ILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEID--GQQI- 255
Query: 223 YGEGGFGAVSQQL 235
G+G G ++QL
Sbjct: 256 -GDGKPGPWTRQL 267
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 78.5 bits (194), Expect = 4e-17
Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 25/222 (11%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSL---YIRPLLMGSGAVLGL 58
R+ A + +P P ++++ AV+ + + W P + +L Y R G
Sbjct: 61 RLARSAALLDLPEPDLDRWRRAVELAI---EEWRAPEDEAALRLVYSR----------GR 107
Query: 59 APAPEYTFLIYVSPVGNYFK----EGIAPINLV--VEHELHRATPGGTGGVKTIGNYAAV 112
T + VSPV EG++ I L + P G KT+ +YA
Sbjct: 108 ESGGAPTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAKTL-SYAVN 166
Query: 113 LKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSI 172
+ A A +G DV++ LE +S + + + + TP ILPG T+ ++
Sbjct: 167 MAALRYAARRGADDVIFTS-TDGYVLEGPTS-TVVIATDDRLLTPPPWYGILPGTTQAAL 224
Query: 173 IDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+VA+ +G+ E R + +L AD V+ + + + V ++
Sbjct: 225 FEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTL 266
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 72.7 bits (179), Expect = 4e-15
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 145 NIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGT 204
N+F VKG+++ TP+++ IL GITR +I V + G +V+E T EELL ADEVF T +
Sbjct: 182 NLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS 241
Query: 205 A---VVVSPVGSITYLGKR 220
V ++ + + GK
Sbjct: 242 IQEIVPLTRIEERDFPGKV 260
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 66.5 bits (163), Expect = 5e-13
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 123 GYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 182
+ L LD + E ++ NIF KGN + TP + + G+ R+ ++ + + G++
Sbjct: 156 EADEALVLDTDGN--VVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYE 213
Query: 183 VEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+EE +EELL ADEVF T + + V PV +I
Sbjct: 214 IEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 66.1 bits (161), Expect = 9e-13
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANK------RWIPPSGKGSLYIRPLLMGSGA 54
R+ A+ + + P +V++ EAV T+ N+ R I GKG L + P +
Sbjct: 53 RLYESAKSILLTIPLTVDEMEEAVLQTLQKNEYADAYIRLIVSRGKGDLGLDPRSCVKPS 112
Query: 55 VLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTG-GVKTIGNYAAVL 113
V+ +A + + P ++ G++ VV R TP +K++ VL
Sbjct: 113 VIIIAEQ------LKLFP-QEFYDNGLS----VVSVASRRNTPDALDPRIKSMNYLNNVL 161
Query: 114 KAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK-GNVISTPAIKGTILPGITRKSI 172
AA+A G + L L+ + Y+ E S N+FVVK G V++ P+ G L GITR S+
Sbjct: 162 VKIEAAQA-GVLEALMLN--QQGYVCEGSGDNVFVVKDGKVLTPPSYLGA-LEGITRNSV 217
Query: 173 IDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVS 232
I++ + EER T ++ ADEVF TGTA + PV + + + G+G G+V+
Sbjct: 218 IELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKVD--SREI--GDGKPGSVT 273
Query: 233 QQL 235
+QL
Sbjct: 274 KQL 276
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 63.3 bits (155), Expect = 7e-12
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 123 GYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 182
+ L LD +E ++ N+F KG V+ TP + + G+ R+ I+++ G+
Sbjct: 158 EADEALVLD-SEGWVIECCAA-NLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYP 215
Query: 183 VEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
V E ++EELL ADEVF + + V PV +I
Sbjct: 216 VVEVDASLEELLQADEVFICNSLMPVWPVRAI 247
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 50.8 bits (121), Expect = 2e-07
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 115 AQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIID 174
A + A+ KG + L+ V + E S N F++K + T IL GI R+ ++
Sbjct: 161 AATKAERKGCKEALF---VRNGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLS 217
Query: 175 VAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQ 234
+A++ V+E L +V ++ ADE F TGT + + P +T+L + +G G +++
Sbjct: 218 LAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILP---MTHLDG-TAIQDGQVGPITKM 273
Query: 235 LYSVLTQ 241
L +Q
Sbjct: 274 LQRSFSQ 280
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 37.3 bits (87), Expect = 0.005
Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 96 TPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNI-FVVKGNVI 154
P VK++ NY +Q A+ +G ++LD + ++ E + N+ F+ +
Sbjct: 177 KPPQFATVKSV-NYLPNALSQMEAEERGAFAGIWLD--EEGFVAEGPNMNVAFLTNDGEL 233
Query: 155 STPAIKGTILPGITRKSIIDVAQ---SQGF--QVEERLVTVEELLDADEVFCTGTAVVVS 209
P IL G T + ++++A S G V++R ++VEE ADE+ G+ V V
Sbjct: 234 VLPPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVL 292
Query: 210 PVGSITYLGKRVSYGEGGFGAVSQQLYSVL 239
P+ +++ G+ + G+G G ++ L+ +L
Sbjct: 293 PI--VSWDGQPI--GDGKVGPITLALHDLL 318
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 33.4 bits (77), Expect = 0.076
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 140 EVSSCNIFV-VKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADE 198
E + N+F+ G +++TP + +LPG+ R ++D G + E ++TV++L A
Sbjct: 139 EGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLD----AG-RAREAVLTVDDLKSARA 193
Query: 199 VFC 201
++
Sbjct: 194 IWV 196
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 29.1 bits (65), Expect = 2.9
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 131 DCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITR-----KSIIDVAQSQGFQVEE 185
D V K+ +E ++ + +KG PAI +L GITR SII A FQ
Sbjct: 2788 DLVSKKLFKEENA-RVIALKGE----PAIAEPVLLGITRAAIGSDSIISAAS---FQETT 2839
Query: 186 RLVT-------VEELLDADEVFCTGTAVVVSPVGSITYLGKRVSY 223
+++T + L D E G + PVG+ Y K++
Sbjct: 2840 KVLTEASIAMKKDFLEDLKENVVLGRMI---PVGTGMYKNKKIVL 2881
>gnl|CDD|205395 pfam13214, DUF4022, Protein of unknown function (DUF4022). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 73 and 85 amino
acids in length.
Length = 83
Score = 26.0 bits (57), Expect = 6.2
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 34 WIPPSG-KGSLYIRPLLMGSGAVLGLAPAPEYTFL 67
W +G K S + LL+G+ ++LGL AP Y F+
Sbjct: 44 WKKSNGIKYSCLLLSLLLGTASILGLLAAPAYFFI 78
>gnl|CDD|234493 TIGR04189, surface_SprA, cell surface protein SprA. SprA is a cell
surface protein widely distributed in the Bacteroidetes
lineage. In Flavobacterium johnsoniae, a species that
shows gliding motility, mutation disrupts gliding.
Length = 2315
Score = 28.1 bits (63), Expect = 6.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 220 RVSYGEGGFGAVSQQL----------YSVLTQLQMG-LIADKMNWTLELS 258
GFGA+ Q+ Y V T L +G L+ +K+ ++
Sbjct: 1458 SGRMSTAGFGALDQKPNERAREDTLQYDVATNLNLGKLLPEKLGISIPFY 1507
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 27.6 bits (61), Expect = 6.6
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 176 AQSQGFQVEERLVTVEELLDADEVFCTGTAV-VVSPVGSITYLGKRVSYGEGG 227
AQ+QG+ + R + +E + A F TG + +V+ GS LG +V GE G
Sbjct: 364 AQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAG 416
>gnl|CDD|179012 PRK00414, gmhA, phosphoheptose isomerase; Reviewed.
Length = 192
Score = 27.0 bits (60), Expect = 7.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 102 GVKTIGNYAAVLKAQSAAKAKG 123
G+ T GN ++KA AA+AKG
Sbjct: 117 GISTSGNSGNIIKAIEAARAKG 138
>gnl|CDD|183086 PRK11320, prpB, 2-methylisocitrate lyase; Provisional.
Length = 292
Score = 27.2 bits (61), Expect = 7.8
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 19 QFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
+F +AVK +LAN I G L+ L +G + L P
Sbjct: 196 RFADAVKVPILAN---ITEFGATPLFTTEELASAGVAMVLYP 234
>gnl|CDD|147018 pfam04656, Pox_E6, Pox virus E6 protein. Family of pox virus E6
proteins.
Length = 566
Score = 27.3 bits (61), Expect = 9.2
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 134 HKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ--VEERLVTVE 191
H + +E+V++ F N P+I TIL II FQ + E L VE
Sbjct: 487 HLKCVEDVTTFVRFATCKNSSILPSIIRTILANFNVSIII------LFQKFLRENLYYVE 540
Query: 192 ELLD 195
E LD
Sbjct: 541 EFLD 544
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
Length = 478
Score = 27.1 bits (60), Expect = 9.8
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 115 AQSAAKAKGYSDV----LYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPG---- 166
A +AAKA GY++ LD ++ Y E+++ I V G T I G L
Sbjct: 259 AVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNT-RIQVEHG---VTEEITGIDLIVRQIR 314
Query: 167 ITRKSIIDVAQS----QGFQVEERL 187
I I+D+ QS +GF +E R+
Sbjct: 315 IAAGEILDLEQSDIKPRGFAIEARI 339
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,245,449
Number of extensions: 1288320
Number of successful extensions: 1147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1114
Number of HSP's successfully gapped: 45
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)