RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025084
         (258 letters)



>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
           aminotransferase {Human (Homo sapiens), mitochondrial
           [TaxId: 9606]}
          Length = 363

 Score =  145 bits (367), Expect = 3e-42
 Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 15/269 (5%)

Query: 1   MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
            RM   A R+C+PS    + +E ++  +  +K W+P +   SLY+RP+L+G+   LG++ 
Sbjct: 96  DRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQ 155

Query: 61  APEYTFLIYVSPVGNYFK-EGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAA 119
                  + + PVG YF    + P++L+ +    RA  GG G  K  GNY   +  Q  A
Sbjct: 156 PRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEA 215

Query: 120 KAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDV 175
             +G   VL+L     +  E  +               + TP + G ILPG+ R+S++D+
Sbjct: 216 LKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 275

Query: 176 AQSQG-FQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKRVSYGEGGF 228
           AQ+ G F+V ER +T+++LL A       EVF +GTA  V PV  I Y  + +       
Sbjct: 276 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMEN 335

Query: 229 G-AVSQQLYSVLTQLQMGLIADKMNWTLE 256
           G  +  +    L ++Q G+ A    W   
Sbjct: 336 GPELILRFQKELKEIQYGIRAH--EWMFP 362


>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
           {Escherichia coli [TaxId: 562]}
          Length = 304

 Score =  141 bits (356), Expect = 3e-41
 Identities = 75/261 (28%), Positives = 117/261 (44%), Gaps = 16/261 (6%)

Query: 2   RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
           R+   A+    P       +        A +  I  +   S YIRPL+      +G+ P 
Sbjct: 56  RLHDSAKIYRFPVSQSIDELME------ACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPP 109

Query: 62  PEYTF--LIYVSPVGNYFKEGIAPINL-VVEHELHRATPGGTGGVK-TIGNYAAVLKAQS 117
             Y+   +I   P G Y         +  +    +RA P          GNY + L   S
Sbjct: 110 AGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGS 169

Query: 118 AAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQ 177
            A+  GY + + LD     Y+ E +  N+F VK  V+ TP    + LPGITR +II +A+
Sbjct: 170 EARRHGYQEGIALDVNG--YISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAK 227

Query: 178 SQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLYS 237
             G +V E++++ E L  ADEVF +GTA  ++PV S+      +  GEG  G V++++  
Sbjct: 228 ELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV----DGIQVGEGRCGPVTKRIQQ 283

Query: 238 VLTQLQMGLIADKMNWTLELS 258
               L  G   DK  W  +++
Sbjct: 284 AFFGLFTGETEDKWGWLDQVN 304


>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
           strain YM-1 [TaxId: 1409]}
          Length = 277

 Score = 88.9 bits (219), Expect = 1e-21
 Identities = 49/236 (20%), Positives = 80/236 (33%), Gaps = 17/236 (7%)

Query: 2   RMQVGAERMCMPSPSVEQFVEA-VKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
           R+   AE++ +  P  +      +   V  N+        G +Y +     S        
Sbjct: 50  RLYASAEKIRITIPYTKDKFHQLLHELVEKNELNT-----GHIYFQVTRGTSPRAHQFPE 104

Query: 61  APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
                 +I  +       E +         E  R        +    N    + A+  A 
Sbjct: 105 NTVKPVIIGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSL----NLLGAVLAKQEAH 160

Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
            KG  + +         + E SS N+F +K  ++ T      IL GITR  +I  A    
Sbjct: 161 EKGCYEAILHRN---NTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEIN 217

Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLY 236
             V+E   T  E L  DE+F T T   ++PV  I          +G  G  +++L 
Sbjct: 218 MPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI----DGKLIRDGKVGEWTRKLQ 269


>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
           [TaxId: 562]}
          Length = 269

 Score = 77.4 bits (189), Expect = 2e-17
 Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 14/235 (5%)

Query: 2   RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
           R+Q   +R+ +      Q  +         K        G L +       G       +
Sbjct: 45  RLQDACQRLMISCDFWPQLEQE-------MKTLAAEQQNGVLKVVISRGSGGRGYSTLNS 97

Query: 62  PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKA 121
              T ++ V+    ++         +    +         G+K +     VL      + 
Sbjct: 98  GPATRILSVTAYPAHYDRLRNEGITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQT 157

Query: 122 KGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGF 181
                   L    + ++ E  + N+F  KGNV+ TP +    + GI R+  I +     +
Sbjct: 158 NADE---ALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSY 214

Query: 182 QVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKRVSYGEGGFGAVSQQLY 236
           Q+ E   ++EE L ADE+      + V PV +       VS+           L 
Sbjct: 215 QLVEVQASLEESLQADEMVICNALMPVMPVCAC----GDVSFSSATLYEYLAPLC 265


>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase
           BA0424 {Bacillus anthracis [TaxId: 1392]}
          Length = 235

 Score = 29.8 bits (66), Expect = 0.28
 Identities = 5/26 (19%), Positives = 15/26 (57%), Gaps = 4/26 (15%)

Query: 172 IIDVAQSQGFQVEERLVTVEELLDAD 197
           IID  + +G+       ++++L+ ++
Sbjct: 214 IIDDLREKGY----HFKSLDDLVKSN 235


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 938,854
Number of extensions: 42773
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 5
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)