Query 025085
Match_columns 258
No_of_seqs 170 out of 249
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4282 Transcription factor G 100.0 5.9E-32 1.3E-36 252.2 22.7 216 22-241 54-318 (345)
2 PF13837 Myb_DNA-bind_4: Myb/S 99.8 2E-20 4.3E-25 142.1 7.1 83 23-109 2-90 (90)
3 PF12776 Myb_DNA-bind_3: Myb/S 98.6 2.2E-07 4.7E-12 71.3 7.9 68 24-94 1-71 (96)
4 smart00595 MADF subfamily of S 98.5 8.9E-08 1.9E-12 72.8 4.2 69 33-110 2-85 (89)
5 PF10545 MADF_DNA_bdg: Alcohol 98.3 4.1E-07 8.8E-12 67.3 1.8 70 33-109 1-85 (85)
6 PF13873 Myb_DNA-bind_5: Myb/S 98.2 6.4E-06 1.4E-10 61.5 7.5 70 21-93 1-77 (78)
7 PF00249 Myb_DNA-binding: Myb- 97.9 3.2E-05 6.9E-10 53.1 5.0 47 23-85 2-48 (48)
8 smart00717 SANT SANT SWI3, AD 97.3 0.00037 8.1E-09 45.6 4.4 47 23-86 2-48 (49)
9 PF13921 Myb_DNA-bind_6: Myb-l 97.3 0.00044 9.5E-09 49.1 4.5 43 25-85 1-44 (60)
10 cd00167 SANT 'SWI3, ADA2, N-Co 97.2 0.0008 1.7E-08 43.5 4.6 45 24-85 1-45 (45)
11 PLN03091 hypothetical protein; 95.3 0.048 1E-06 54.1 6.9 54 19-90 64-117 (459)
12 PLN03212 Transcription repress 95.2 0.044 9.6E-07 50.6 6.1 54 19-90 75-128 (249)
13 PF04504 DUF573: Protein of un 95.1 0.11 2.4E-06 41.4 7.4 67 23-94 5-71 (98)
14 PLN03212 Transcription repress 94.2 0.099 2.1E-06 48.4 5.7 50 19-84 22-71 (249)
15 PLN03091 hypothetical protein; 90.6 0.34 7.3E-06 48.3 4.5 49 19-83 11-59 (459)
16 KOG1279 Chromatin remodeling f 90.5 0.33 7.2E-06 49.1 4.4 49 18-84 249-297 (506)
17 KOG0457 Histone acetyltransfer 89.7 6.6 0.00014 39.2 12.4 43 20-79 70-112 (438)
18 COG5259 RSC8 RSC chromatin rem 89.5 0.53 1.1E-05 47.3 4.8 46 21-84 278-323 (531)
19 PRK13923 putative spore coat p 83.9 2.7 5.9E-05 37.0 5.7 58 20-90 3-62 (170)
20 TIGR02894 DNA_bind_RsfA transc 82.7 3.3 7.1E-05 36.2 5.6 60 20-91 2-62 (161)
21 KOG0051 RNA polymerase I termi 82.3 2.3 5E-05 44.0 5.3 68 20-95 434-517 (607)
22 PF03353 Lin-8: Ras-mediated v 80.2 4 8.6E-05 38.2 5.7 78 24-106 19-112 (313)
23 KOG0049 Transcription factor, 69.6 7.6 0.00017 41.0 5.0 57 17-89 248-304 (939)
24 TIGR01557 myb_SHAQKYF myb-like 69.2 16 0.00035 26.4 5.3 48 21-83 2-52 (57)
25 KOG0048 Transcription factor, 67.7 18 0.00038 32.7 6.5 56 19-92 59-115 (238)
26 KOG4348 Adaptor protein CMS/SE 66.4 26 0.00056 35.6 7.8 55 179-241 569-623 (627)
27 PF15444 TMEM247: Transmembran 58.0 14 0.00031 33.2 3.9 14 204-217 101-114 (218)
28 PF13404 HTH_AsnC-type: AsnC-t 44.6 35 0.00077 22.9 3.4 24 53-85 19-42 (42)
29 KOG0049 Transcription factor, 39.0 54 0.0012 34.9 5.2 48 19-83 357-404 (939)
30 PF13767 DUF4168: Domain of un 32.3 2.1E+02 0.0046 21.3 6.8 50 186-241 4-53 (78)
31 COG1422 Predicted membrane pro 31.6 2.2E+02 0.0048 25.9 7.3 51 185-237 61-119 (201)
32 KOG0048 Transcription factor, 31.2 47 0.001 30.0 3.0 45 23-83 10-54 (238)
33 PF07227 DUF1423: Protein of u 30.5 2.3E+02 0.005 28.7 7.9 53 179-234 367-424 (446)
34 PRK13271 treA trehalase; Provi 28.9 46 0.001 34.4 2.8 21 20-40 519-539 (569)
35 PF06576 DUF1133: Protein of u 28.6 1.1E+02 0.0024 27.2 4.7 26 55-84 134-159 (176)
36 KOG0050 mRNA splicing protein 27.9 51 0.0011 34.1 2.8 23 52-82 28-50 (617)
37 PF05278 PEARLI-4: Arabidopsis 27.9 3.1E+02 0.0066 26.0 7.8 18 198-215 191-208 (269)
38 smart00586 ZnF_DBF Zinc finger 27.6 26 0.00056 24.9 0.5 37 75-111 9-45 (49)
39 KOG4661 Hsp27-ERE-TATA-binding 27.0 1.4E+02 0.003 31.7 5.7 22 208-230 664-685 (940)
40 PF04568 IATP: Mitochondrial A 26.9 2.8E+02 0.006 22.4 6.4 40 187-226 46-91 (100)
41 PF09420 Nop16: Ribosome bioge 23.3 1E+02 0.0022 26.3 3.5 16 70-85 148-163 (164)
42 PF12037 DUF3523: Domain of un 23.2 4.2E+02 0.0091 25.2 7.8 50 186-235 133-183 (276)
43 PF11945 WASH_WAHD: WAHD domai 21.6 7E+02 0.015 23.7 9.0 58 178-243 17-74 (297)
44 PF04231 Endonuclease_1: Endon 21.5 2.2E+02 0.0048 25.8 5.5 51 182-232 157-207 (218)
45 smart00502 BBC B-Box C-termina 20.7 3.6E+02 0.0077 20.4 5.9 38 189-226 46-83 (127)
46 PRK13694 hypothetical protein; 20.5 1.9E+02 0.0042 22.8 4.2 27 183-209 9-35 (83)
No 1
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=100.00 E-value=5.9e-32 Score=252.22 Aligned_cols=216 Identities=34% Similarity=0.453 Sum_probs=150.6
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC----CC
Q 025085 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP----PP 97 (258)
Q Consensus 22 ~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~~----~~ 97 (258)
.++|+.+||++||++|+++|..|+++++++++|++||.++... +++||+.||++||+||+++||++|.+. ..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~----g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~ 129 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAEL----GYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEG 129 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 7999999999999999999999999999999999999988764 488999999999999999999999986 48
Q ss_pred CCCcchHHHHHhhC-CCCCC---------CCCCCcccccc----cCCCCCC-----------CC-CC-----CC---CcC
Q 025085 98 SKWPFYYRLDSLIG-NDAVS---------SKKPANITLRV----KSKPRTS-----------FV-GR-----SV---STE 143 (258)
Q Consensus 98 s~W~fFd~LD~Llg-~~~~~---------~~~P~~~~~~~----~~~p~~~-----------~~-~~-----~~---~~~ 143 (258)
++|+||+.||.++. ..++. ...|.++.... ..+|... .+ .+ .. ...
T Consensus 130 s~~~ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 209 (345)
T KOG4282|consen 130 SSWKFFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEPV 209 (345)
T ss_pred ccchHHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCCC
Confidence 89999999999997 22210 01111110000 0000000 00 00 00 000
Q ss_pred CCCC------CCCCCCCCCCCC-hhhhhhhhcccccccCCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 025085 144 NDNL------SSDGEADDDGDD-DEIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE-SAKQKQMMELEKERLE 215 (258)
Q Consensus 144 ~~~~------~~d~~~~~~~~~-~~~~~~k~~r~~~~~~~~~~~~~eLA~aI~~f~e~yer~E-~~K~~~m~elEk~Rme 215 (258)
.+.+ +++.++..+... ......++.+........+..++++++++.+|+++|+++| ..++++|.++|+.||+
T Consensus 210 ~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~r~~ 289 (345)
T KOG4282|consen 210 AGSLSNDTSSSSSPDDSADSEGGKSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEEKKEQERMSEEEKWRME 289 (345)
T ss_pred CcchhhccccccchhcccccccCCCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhhhhHHHHHHHH
Confidence 0000 111111111110 0111111222222223446789999999999999999999 9999999999999999
Q ss_pred hh---HHHHHHHHHHHHHHHHHHHHhhhc
Q 025085 216 FI---KDVECERMNMFMGAQLEIQKSKRK 241 (258)
Q Consensus 216 f~---kdlE~~R~q~~~~~Q~ei~~~k~~ 241 (258)
|+ +++|++++++++++|++|+.|+..
T Consensus 290 ~~~r~ke~e~~~~~~~~~~~~~i~~i~~~ 318 (345)
T KOG4282|consen 290 EIERNKELELARQERIQETQLEIRSIKAI 318 (345)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999976654
No 2
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.82 E-value=2e-20 Score=142.06 Aligned_cols=83 Identities=35% Similarity=0.719 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHhhHHHh--hhc-CCCChh-hHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC--C
Q 025085 23 DCWSEGATGTLIEAWGDRYVR--LNR-GHLRQK-DWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP--P 96 (258)
Q Consensus 23 ~~WSe~ET~~LIeawger~~~--l~r-g~LR~k-~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~~--~ 96 (258)
..||++||.+||++|++.+.+ +.. ++.+++ .|++||+.|++++ +.+|+.||++||++|+++|++++.+. .
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G----~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~ 77 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHG----YNRTPEQCRNKWKNLKKKYKKIKDRNKKS 77 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHCSSSSSS--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 579999999999999996544 443 577776 8999999999763 67999999999999999999999986 4
Q ss_pred CCCCcchHHHHHh
Q 025085 97 PSKWPFYYRLDSL 109 (258)
Q Consensus 97 ~s~W~fFd~LD~L 109 (258)
+++|+||+.||.|
T Consensus 78 ~~~w~~f~~md~i 90 (90)
T PF13837_consen 78 GSSWPYFDEMDEI 90 (90)
T ss_dssp --S---TT-----
T ss_pred CCcCcCHHHHhcC
Confidence 6799999999987
No 3
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.59 E-value=2.2e-07 Score=71.27 Aligned_cols=68 Identities=29% Similarity=0.474 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHhhHHHhhh---cCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 025085 24 CWSEGATGTLIEAWGDRYVRLN---RGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (258)
Q Consensus 24 ~WSe~ET~~LIeawger~~~l~---rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~ 94 (258)
.||++.+..||+++-+.-..-+ .+.++...|..|+.+++++.+ ...|..||+||++.||+.|+..+.-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~---~~~t~~qlknk~~~lk~~y~~~~~l 71 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTG---LNYTKKQLKNKWKTLKKDYRIWKEL 71 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhC---CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999988755544 356777899999999999754 5689999999999999999998764
No 4
>smart00595 MADF subfamily of SANT domain.
Probab=98.53 E-value=8.9e-08 Score=72.75 Aligned_cols=69 Identities=30% Similarity=0.534 Sum_probs=53.0
Q ss_pred HHHHHhhHHHh-------hhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC------C--C
Q 025085 33 LIEAWGDRYVR-------LNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP------P--P 97 (258)
Q Consensus 33 LIeawger~~~-------l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~~------~--~ 97 (258)
||++|...-.- ......+...|.+||..|+. |..+|+.||++|+..|+.+..+. + +
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~---------~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~ 72 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL---------SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK 72 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc---------CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 67777764222 23334556689999999953 89999999999999999987542 1 5
Q ss_pred CCCcchHHHHHhh
Q 025085 98 SKWPFYYRLDSLI 110 (258)
Q Consensus 98 s~W~fFd~LD~Ll 110 (258)
+.|+||+.|..|-
T Consensus 73 ~~w~~~~~m~FL~ 85 (89)
T smart00595 73 SKWEYFDRLSFLR 85 (89)
T ss_pred CCchhhHhhhhHH
Confidence 8999999998875
No 5
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=98.25 E-value=4.1e-07 Score=67.30 Aligned_cols=70 Identities=27% Similarity=0.480 Sum_probs=51.8
Q ss_pred HHHHHhhHHHhh-------hcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC--------CC
Q 025085 33 LIEAWGDRYVRL-------NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP--------PP 97 (258)
Q Consensus 33 LIeawger~~~l-------~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~~--------~~ 97 (258)
||++|...-.-. ....++...|++||..++.. .+..+|+.+|.+|+..|+.++.+. ..
T Consensus 1 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aw~~Ia~~l~~~-------~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~ 73 (85)
T PF10545_consen 1 LIELVKKHPCLWDPSHPDYKNRQLREEAWQEIARELGKE-------FSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYV 73 (85)
T ss_pred CHHHHhhCHHhhCCCCcccCCHHHHHHHHHHHHHHHccc-------hhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 566666543322 23335567899999999643 468899999999999999988653 37
Q ss_pred CCCcchHHHHHh
Q 025085 98 SKWPFYYRLDSL 109 (258)
Q Consensus 98 s~W~fFd~LD~L 109 (258)
++|.||+.|.-|
T Consensus 74 ~~~~~~~~l~FL 85 (85)
T PF10545_consen 74 PTWSYYEELSFL 85 (85)
T ss_pred CccHHHHHCcCC
Confidence 899999999754
No 6
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.21 E-value=6.4e-06 Score=61.49 Aligned_cols=70 Identities=29% Similarity=0.298 Sum_probs=55.1
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhc-CC------CChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 025085 21 REDCWSEGATGTLIEAWGDRYVRLNR-GH------LRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKA 93 (258)
Q Consensus 21 r~~~WSe~ET~~LIeawger~~~l~r-g~------LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~ 93 (258)
|...||.+|+.+||+........+.. .+ .+...|++|+..||+..+ ..+|+.||+.++++||..=|+.-.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~---~~Rs~~~lkkkW~nlk~~~Kk~~~ 77 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP---GKRSWKQLKKKWKNLKSKAKKKLA 77 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999998886555432 11 234579999999999643 279999999999999998887644
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.86 E-value=3.2e-05 Score=53.14 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025085 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (258)
Q Consensus 23 ~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LK 85 (258)
..||.+|...|+++....-. ..|..||..|. ..||..||++++.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~---------~~W~~Ia~~~~-------~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGK---------DNWKKIAKRMP-------GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTT---------THHHHHHHHHS-------SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------cHHHHHHHHcC-------CCCCHHHHHHHHHhhC
Confidence 37999999999998764321 17999999995 1489999999998874
No 8
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.34 E-value=0.00037 Score=45.65 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025085 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (258)
Q Consensus 23 ~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKK 86 (258)
..||.+|...|+.+....-. ..|..||..+. .+|+.||++++.++.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~--------~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP--------GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC--------CCCHHHHHHHHHHHcC
Confidence 47999999999988764311 47999999994 4899999999988764
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.28 E-value=0.00044 Score=49.05 Aligned_cols=43 Identities=35% Similarity=0.730 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH-HH
Q 025085 25 WSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LK 85 (258)
Q Consensus 25 WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~-LK 85 (258)
||.+|...|+..+... |+ .|..||..|. .||..||++|+.+ |+
T Consensus 1 WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l~--------~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY------GN----DWKKIAEHLG--------NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHH------TS-----HHHHHHHST--------TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHH------Cc----CHHHHHHHHC--------cCCHHHHHHHHHHHCc
Confidence 9999999999998874 22 6999999984 3899999999988 64
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.18 E-value=0.0008 Score=43.49 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025085 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (258)
Q Consensus 24 ~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LK 85 (258)
.||.+|...|+.+....-. ..|..||..|. .||..||++++.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~--------~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELP--------GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcC--------CCCHHHHHHHHHHhC
Confidence 4999999999988774421 46999999994 289999999988763
No 11
>PLN03091 hypothetical protein; Provisional
Probab=95.28 E-value=0.048 Score=54.11 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~ 90 (258)
......||.+|-..||+.+.. -| ..|..||..| +.||+.||||+|..+-++|.+
T Consensus 64 ~IkKgpWT~EED~lLLeL~k~------~G----nKWskIAk~L--------PGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 64 DLKRGTFSQQEENLIIELHAV------LG----NRWSQIAAQL--------PGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred cccCCCCCHHHHHHHHHHHHH------hC----cchHHHHHhc--------CCCCHHHHHHHHHHHHHHHHH
Confidence 345668999999999988753 13 3699999988 348999999999998777655
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.23 E-value=0.044 Score=50.63 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~ 90 (258)
......||.+|-..||+.+.. -| ..|..||..|. .||+.||||+|.++.++...
T Consensus 75 ~I~kgpWT~EED~lLlel~~~------~G----nKWs~IAk~Lp--------GRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 75 SVKRGGITSDEEDLILRLHRL------LG----NRWSLIAGRIP--------GRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred hcccCCCChHHHHHHHHHHHh------cc----ccHHHHHhhcC--------CCCHHHHHHHHHHHHhHHHH
Confidence 345679999999999987533 12 25999999883 48999999999976665533
No 13
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=95.14 E-value=0.11 Score=41.37 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 025085 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (258)
Q Consensus 23 ~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~ 94 (258)
-.||++.-.+||+..-+....-+.. ...+|..+.+.|..... ...|..|-..||..||++|.....+
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~--p~~d~~~f~~~vk~~l~---~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKS--PQPDMNAFYDFVKGSLS---FDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCC--CCccHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3699999999999988764444443 33488888888887543 5578999999999999999997766
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.19 E-value=0.099 Score=48.37 Aligned_cols=50 Identities=14% Similarity=0.355 Sum_probs=36.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
+-+...||.+|-..|+.+-... | ...|..||..|. +.||+.|||.||.+.
T Consensus 22 glKRg~WT~EEDe~L~~lV~ky------G---~~nW~~IAk~~g-------~gRT~KQCReRW~N~ 71 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKE------G---EGRWRSLPKRAG-------LLRCGKSCRLRWMNY 71 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh------C---cccHHHHHHhhh-------cCCCcchHHHHHHHh
Confidence 4566789999999888753322 2 235999998873 348999999999743
No 15
>PLN03091 hypothetical protein; Provisional
Probab=90.60 E-value=0.34 Score=48.27 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=36.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
..+...||.+|-..|+.+.... |. ..|..||..+. ..||+.|||.||.+
T Consensus 11 klrKg~WTpEEDe~L~~~V~ky------G~---~nWs~IAk~~g-------~gRT~KQCRERW~N 59 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKY------GH---GCWSSVPKQAG-------LQRCGKSCRLRWIN 59 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh------Cc---CCHHHHhhhhc-------cCcCcchHhHHHHh
Confidence 3456689999999998776421 22 36999997763 34899999999874
No 16
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=90.51 E-value=0.33 Score=49.06 Aligned_cols=49 Identities=33% Similarity=0.491 Sum_probs=38.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 18 g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
+..-+..||++||++||++-.- ...+|..||..|. .||..||--||=.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~----------y~ddW~kVa~hVg--------~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEM----------YGDDWNKVADHVG--------TKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHH----------hcccHHHHHhccC--------CCCHHHHHHHHHhc
Confidence 4566789999999999987432 1347999999995 38999999888655
No 17
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=89.67 E-value=6.6 Score=39.18 Aligned_cols=43 Identities=26% Similarity=0.538 Sum_probs=33.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKN 79 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~ 79 (258)
--.+.||..|-.+||++-. .++-|| |++||+.|- .||..+|+.
T Consensus 70 i~~~~WtadEEilLLea~~----t~G~GN-----W~dIA~hIG--------tKtkeeck~ 112 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAE----TYGFGN-----WQDIADHIG--------TKTKEECKE 112 (438)
T ss_pred CCCCCCChHHHHHHHHHHH----HhCCCc-----HHHHHHHHc--------ccchHHHHH
Confidence 3456899999999999853 345564 999999994 279999973
No 18
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=89.49 E-value=0.53 Score=47.28 Aligned_cols=46 Identities=33% Similarity=0.465 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 21 r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
+...||.+|+++||+.-... ..+|..||..|.. ||..||--||=.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~y----------gDdW~kVA~HVgt--------Kt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMY----------GDDWDKVARHVGT--------KTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHh----------hhhHHHHHHHhCC--------CCHHHHHHHHHcC
Confidence 56699999999998753221 2379999999953 8999999888665
No 19
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=83.91 E-value=2.7 Score=37.00 Aligned_cols=58 Identities=28% Similarity=0.559 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhh-hcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHH-HHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRL-NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRI-DTLKKKYKI 90 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l-~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Ki-d~LKKrYK~ 90 (258)
.+.++||.++-.+|-+++ +.. ..|+.+-..+++|+..++ +|..+|.-+| -.++++|..
T Consensus 3 ~rqdawt~e~d~llae~v----l~~i~eg~tql~afe~~g~~L~---------rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVV----LRHIREGGTQLKAFEEVGDALK---------RTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred chhhhhhhHHHHHHHHHH----HHHHhccchHHHHHHHHHHHHh---------hhHHHHHhHHHHHHHHHHHH
Confidence 467899999999985544 433 357766677999999986 6999999999 456777766
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.74 E-value=3.3 Score=36.24 Aligned_cols=60 Identities=25% Similarity=0.463 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH-HHHHHHHh
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LKKKYKIE 91 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~-LKKrYK~e 91 (258)
.|-+.||+++-+.|-++-= ++ +..|+..-.-++||++.+| ||+.=|.-||.. ++|+|..+
T Consensus 2 ~RQDAWT~eeDlLLAEtVL-rh--IReG~TQL~AFeEvg~~L~---------RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVL-RH--IREGSTQLSAFEEVGRALN---------RTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred ccccccccHHHHHHHHHHH-HH--HhcchHHHHHHHHHHHHHc---------ccHHHhcchHHHHHHHHHHHH
Confidence 4678999999998877632 22 3456655567999999996 799999999985 67889885
No 21
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=82.34 E-value=2.3 Score=44.00 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=50.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHH---hhh--------c----CCCChhh-HHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYV---RLN--------R----GHLRQKD-WKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~---~l~--------r----g~LR~k~-W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
-....||-+|+..||.+..+.+. |.. + +.|...+ |-.|++.+- .|+..|||.|+-.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~--------TR~~~qCr~Kw~k 505 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG--------TRSRIQCRYKWYK 505 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc--------CCCcchHHHHHHH
Confidence 45668999999999999987544 331 1 1233333 999999442 3789999999999
Q ss_pred HHHHHHHhhCCC
Q 025085 84 LKKKYKIEKAKP 95 (258)
Q Consensus 84 LKKrYK~eK~~~ 95 (258)
|-..+=.-+.+.
T Consensus 506 l~~~~s~n~~~~ 517 (607)
T KOG0051|consen 506 LTTSPSFNKRQE 517 (607)
T ss_pred HHhhHHhhcccc
Confidence 999887766653
No 22
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=80.19 E-value=4 Score=38.16 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHh---hHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH-----h-hCC
Q 025085 24 CWSEGATGTLIEAWG---DRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI-----E-KAK 94 (258)
Q Consensus 24 ~WSe~ET~~LIeawg---er~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~-----e-K~~ 94 (258)
.|...-..++|..-+ +-|- ..+......|+.||..|-.|-| ...+..+++.=|.+-|...|. + +.+
T Consensus 19 ~~~~~~kk~il~~i~~~p~lw~--~~~~~~~~~~~~v~v~vy~Rtg---~~~~~~~i~~~~~~aK~~Lr~~l~~~I~~~~ 93 (313)
T PF03353_consen 19 KKDVELKKVILSEIEKFPELWK--KKSRVPNEEWEEVAVEVYKRTG---KLVSVKHIRSIFKNAKDSLRRRLRKCIKKKK 93 (313)
T ss_pred hhhHHHHHHHHHHHhcChHhhh--ccCCccHHHHHHHHHHHHHHHh---hhcCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 343334444444444 4444 4445556789999999999864 457888888888777776665 2 222
Q ss_pred CC-------CCCCcchHHH
Q 025085 95 PP-------PSKWPFYYRL 106 (258)
Q Consensus 95 ~~-------~s~W~fFd~L 106 (258)
.+ -..|+||..|
T Consensus 94 l~~~~~E~~L~~W~~Y~~~ 112 (313)
T PF03353_consen 94 LSPEETEEKLWKWELYPFI 112 (313)
T ss_pred CCHHHHHHHHHcCCccchh
Confidence 22 3579988755
No 23
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=69.56 E-value=7.6 Score=40.97 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025085 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (258)
Q Consensus 17 ~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK 89 (258)
.+..+...||.+|...|+.+=.. .+...|+-||..+- .++++-||-.||.+=-+..+
T Consensus 248 ~P~~nk~~WS~EE~E~L~AiA~A---------~~~~~W~~IA~~Lg-------t~RS~yQC~~kF~t~~~~L~ 304 (939)
T KOG0049|consen 248 NPKWNKEHWSNEEVEKLKALAEA---------PKFVSWPMIALNLG-------TNRSSYQCMEKFKTEVSQLS 304 (939)
T ss_pred CCccchhccChHHHHHHHHHHhc---------cccccHHHHHHHhC-------CCcchHHHHHHHHHHHHHHH
Confidence 34678899999999998765322 12346999999983 56899999999987544433
No 24
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=69.23 E-value=16 Score=26.35 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhH---HHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDW---KEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 21 r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W---~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
++..||+++-..+|+++.. ++.| +| ..|++.|.. ...|..||+.-..+
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~----~G~g-----~~a~pk~I~~~~~~------~~lT~~qV~SH~QK 52 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQK----LGGP-----DWATPKRILELMVV------DGLTRDQVASHLQK 52 (57)
T ss_pred CCCCCCHHHHHHHHHHHHH----hCCC-----cccchHHHHHHcCC------CCCCHHHHHHHHHH
Confidence 4678999999999998753 3443 58 889988863 22499999976543
No 25
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=67.65 E-value=18 Score=32.70 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH-HHHHHHHhh
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LKKKYKIEK 92 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~-LKKrYK~eK 92 (258)
.-....||++|..+||.+.... || -|..||..| +.||+--.||=|.+ |||+++...
T Consensus 59 ~ikrg~fT~eEe~~Ii~lH~~~------GN----rWs~IA~~L--------PGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 59 DLKRGNFSDEEEDLIIKLHALL------GN----RWSLIAGRL--------PGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CccCCCCCHHHHHHHHHHHHHH------Cc----HHHHHHhhC--------CCcCHHHHHHHHHHHHHHHHHHcC
Confidence 3456689999999999886542 22 299999999 56899888888865 588888765
No 26
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=66.44 E-value=26 Score=35.63 Aligned_cols=55 Identities=31% Similarity=0.358 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 025085 179 AACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRK 241 (258)
Q Consensus 179 ~~~~eLA~aI~~f~e~yer~E~~K~~~m~elEk~Rmef~kdlE~~R~q~~~~~Q~ei~~~k~~ 241 (258)
+++.||-..|+-+-- =||..|-+|-+|||+.|.| ||-.. .|-.+-||||.+||.+
T Consensus 569 ~s~delr~qi~el~~---ive~lk~~~~kel~kl~~d----leeek-~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 569 NSLDELRAQIIELLC---IVEALKKDHGKELEKLRKD----LEEEK-TMRSNLEMEIEKLKKA 623 (627)
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHH-HHHhhhHhhHHHHHHH
Confidence 366677666665444 4789999999999999988 55443 2456889999999876
No 27
>PF15444 TMEM247: Transmembrane protein 247
Probab=58.03 E-value=14 Score=33.22 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhh
Q 025085 204 KQMMELEKERLEFI 217 (258)
Q Consensus 204 ~~m~elEk~Rmef~ 217 (258)
...+||||.||||.
T Consensus 101 ~~emELEKvRMEFE 114 (218)
T PF15444_consen 101 NTEMELEKVRMEFE 114 (218)
T ss_pred chhhHHHHHHHHHH
Confidence 34578999999985
No 28
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=44.57 E-value=35 Score=22.91 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.3
Q ss_pred hHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025085 53 DWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (258)
Q Consensus 53 ~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LK 85 (258)
-|.+||+.|. -|...|..+|..|+
T Consensus 19 s~~~la~~lg---------lS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 19 SYAELAEELG---------LSESTVRRRIRRLE 42 (42)
T ss_dssp -HHHHHHHHT---------S-HHHHHHHHHHHH
T ss_pred cHHHHHHHHC---------cCHHHHHHHHHHhC
Confidence 4889999994 58899999999885
No 29
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=39.03 E-value=54 Score=34.94 Aligned_cols=48 Identities=27% Similarity=0.567 Sum_probs=37.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
+..-..|+++|-..|+.|-.+. ..++|..|-..| +++++.|||.+.-+
T Consensus 357 sikhg~wt~~ED~~L~~AV~~Y---------g~kdw~k~R~~v--------PnRSdsQcR~RY~n 404 (939)
T KOG0049|consen 357 SVKHGRWTDQEDVLLVCAVSRY---------GAKDWAKVRQAV--------PNRSDSQCRERYTN 404 (939)
T ss_pred cccCCCCCCHHHHHHHHHHHHh---------CccchhhHHHhc--------CCccHHHHHHHHHH
Confidence 4445589999999999875432 246898888888 67999999998655
No 30
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=32.31 E-value=2.1e+02 Score=21.26 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 025085 186 RAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRK 241 (258)
Q Consensus 186 ~aI~~f~e~yer~E~~K~~~m~elEk~Rmef~kdlE~~R~q~~~~~Q~ei~~~k~~ 241 (258)
.-|..|+.+|..||.-+.+...+|.. . +-.-+..+|-.++|.+.+++...
T Consensus 4 ~el~~fA~A~~~ie~ir~~~~~~l~~-----~-~~~~~~~~l~~~a~~~~~~~I~~ 53 (78)
T PF13767_consen 4 AELDQFARAVLEIEPIRQEYQQELQA-----A-EDPEEIQELQEEAQEEMVEAIEE 53 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----c-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999998888877 1 12456677778888888877743
No 31
>COG1422 Predicted membrane protein [Function unknown]
Probab=31.62 E-value=2.2e+02 Score=25.87 Aligned_cols=51 Identities=27% Similarity=0.280 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHH
Q 025085 185 ARAILKFGEIYERIESAKQKQMMELEKERLEFI--------KDVECERMNMFMGAQLEIQK 237 (258)
Q Consensus 185 A~aI~~f~e~yer~E~~K~~~m~elEk~Rmef~--------kdlE~~R~q~~~~~Q~ei~~ 237 (258)
..-+++|-=-+||++.-| ++|.|+.+...|+. +.|+-++++|. +-|.|+.+
T Consensus 61 ~~i~~~~liD~ekm~~~q-k~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~-~~Q~elmk 119 (201)
T COG1422 61 ITILQKLLIDQEKMKELQ-KMMKEFQKEFREAQESGDMKKLKKLQEKQMEMM-DDQRELMK 119 (201)
T ss_pred HHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 334455555567776553 56677766666655 45666666654 55666655
No 32
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=31.21 E-value=47 Score=29.97 Aligned_cols=45 Identities=11% Similarity=0.241 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 23 ~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
..||.+|-..|++.-.. .+-| -|--||...- ..|++++||-||-|
T Consensus 10 GpWt~EED~~L~~~V~~----~G~~-----~W~~i~k~~g-------l~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKS----FGKH-----NGTALPKLAG-------LRRCGKSCRLRWTN 54 (238)
T ss_pred CCCChHHHHHHHHHHHH----hCCC-----CcchhhhhcC-------CCccchHHHHHhhc
Confidence 58999999988763221 1112 5888888773 24888999999865
No 33
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=30.47 E-value=2.3e+02 Score=28.68 Aligned_cols=53 Identities=26% Similarity=0.213 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 025085 179 AACRELARAILKFGEIYERIESAKQKQMME-----LEKERLEFIKDVECERMNMFMGAQLE 234 (258)
Q Consensus 179 ~~~~eLA~aI~~f~e~yer~E~~K~~~m~e-----lEk~Rmef~kdlE~~R~q~~~~~Q~e 234 (258)
.=|-.-|+..|+=||.|-||-.+|-+++.| +=|.|+. |.|-+|.+.|++.|+.
T Consensus 367 ~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~l~---eaee~r~~~~eelk~~ 424 (446)
T PF07227_consen 367 KMFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKLRLN---EAEEERKKKFEELKVL 424 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHH
Confidence 345578999999999999999999988875 4455555 7888999999887764
No 34
>PRK13271 treA trehalase; Provisional
Probab=28.95 E-value=46 Score=34.39 Aligned_cols=21 Identities=14% Similarity=0.291 Sum_probs=18.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhH
Q 025085 20 GREDCWSEGATGTLIEAWGDR 40 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger 40 (258)
..++.||.+-++.||+.|+.+
T Consensus 519 q~GFGWTNgV~L~lL~~~~~~ 539 (569)
T PRK13271 519 QDGFGWTNGVTLKMLDLICPK 539 (569)
T ss_pred CCCcCcHHHHHHHHHHhcCcc
Confidence 458999999999999988765
No 35
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=28.56 E-value=1.1e+02 Score=27.23 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=21.3
Q ss_pred HHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 55 KEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 55 ~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
..+|+.++..+ +.-+-.||++||+.=
T Consensus 134 ~~MA~eL~~~h----Pew~~~TC~~RI~~w 159 (176)
T PF06576_consen 134 RKMAEELNEKH----PEWCLRTCRRRIDWW 159 (176)
T ss_pred HHHHHHHhccC----CcccHHHHHHHHHHH
Confidence 35899998754 788999999999864
No 36
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=27.89 E-value=51 Score=34.07 Aligned_cols=23 Identities=39% Similarity=0.741 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHcccCCCCCCCChHHHHHHHH
Q 025085 52 KDWKEVAESVNSRENGVKPKKTDIQCKNRID 82 (258)
Q Consensus 52 k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid 82 (258)
..|.+||.-++. +|..||+++|.
T Consensus 28 nqws~i~sll~~--------kt~rqC~~rw~ 50 (617)
T KOG0050|consen 28 NQWSRIASLLNR--------KTARQCKARWE 50 (617)
T ss_pred HHHHHHHHHHhh--------cchhHHHHHHH
No 37
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.87 E-value=3.1e+02 Score=26.02 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025085 198 IESAKQKQMMELEKERLE 215 (258)
Q Consensus 198 ~E~~K~~~m~elEk~Rme 215 (258)
.|..|......|+..+.|
T Consensus 191 ~e~eke~~~r~l~~~~~E 208 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEE 208 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 38
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=27.61 E-value=26 Score=24.92 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCcchHHHHHhhC
Q 025085 75 IQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIG 111 (258)
Q Consensus 75 ~QCr~Kid~LKKrYK~eK~~~~~s~W~fFd~LD~Llg 111 (258)
.-|+.|+++|..--..++-+.-...=..|..||.||.
T Consensus 9 E~Cr~kfd~l~~Hi~s~~Hr~FA~~~~Nf~~lD~Li~ 45 (49)
T smart00586 9 ENCREKYDDLETHLLSEKHRRFAENNDNFQALDDLIS 45 (49)
T ss_pred ccHhHHHhhHHHHhccHHHHHHHcCchhHHHHHHHHH
Confidence 5699999999986666665432223356888888875
No 39
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=27.00 E-value=1.4e+02 Score=31.66 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=13.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 025085 208 ELEKERLEFIKDVECERMNMFMG 230 (258)
Q Consensus 208 elEk~Rmef~kdlE~~R~q~~~~ 230 (258)
.||+.|||.. -||++||.+...
T Consensus 664 rLERErmErE-RLEreRM~ve~e 685 (940)
T KOG4661|consen 664 RLERERMERE-RLERERMKVEEE 685 (940)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHh
Confidence 3555555533 377888776654
No 40
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=26.90 E-value=2.8e+02 Score=22.42 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHH
Q 025085 187 AILKFGEIYERIESA------KQKQMMELEKERLEFIKDVECERMN 226 (258)
Q Consensus 187 aI~~f~e~yer~E~~------K~~~m~elEk~Rmef~kdlE~~R~q 226 (258)
+|+.-|.+|-+.|.| +.++...|++.|.....|.+.++.+
T Consensus 46 sir~ag~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~ 91 (100)
T PF04568_consen 46 SIRAAGGAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKE 91 (100)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCCccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 4556666777777766666656655
No 41
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=23.31 E-value=1e+02 Score=26.30 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHHHHH
Q 025085 70 PKKTDIQCKNRIDTLK 85 (258)
Q Consensus 70 ~~kT~~QCr~Kid~LK 85 (258)
+.-|+.||+.||...+
T Consensus 148 ~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 148 MQHTPGQLRRKIRKYK 163 (164)
T ss_pred ccCCHHHHHHHHHHhc
Confidence 5679999999988755
No 42
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=23.24 E-value=4.2e+02 Score=25.18 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHH
Q 025085 186 RAILKFGEIYERIESAKQKQMMELEKERLEFI-KDVECERMNMFMGAQLEI 235 (258)
Q Consensus 186 ~aI~~f~e~yer~E~~K~~~m~elEk~Rmef~-kdlE~~R~q~~~~~Q~ei 235 (258)
+.++.=-|.+.|.|+.+.+.-.+|..+|+.-. .++|++|-.+..++..|.
T Consensus 133 e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~k~~AEa 183 (276)
T PF12037_consen 133 ELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERAKAEAEA 183 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666678999999999999888887776644 778888888887777773
No 43
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=21.56 E-value=7e+02 Score=23.74 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025085 178 GAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQR 243 (258)
Q Consensus 178 ~~~~~eLA~aI~~f~e~yer~E~~K~~~m~elEk~Rmef~kdlE~~R~q~~~~~Q~ei~~~k~~~~ 243 (258)
...+..+++|+..|-.+...|= .+..+-++.++.|++ .++.+ |..+|..|.+|+..|+
T Consensus 17 eEti~qi~~aL~~L~~v~~diF-~rI~~Rv~~~~~~l~-----~i~~R--i~~~qaKi~~l~gs~k 74 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSNDIF-SRISARVERNRERLQ-----AIQQR--IEVAQAKIEKLQGSKK 74 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----HHHHH--HHHHHHHHHHHhCCCc
Confidence 3566777888776655444432 233455777888888 34333 6688999999988753
No 44
>PF04231 Endonuclease_1: Endonuclease I; InterPro: IPR007346 Bacterial periplasmic or secreted (3.1.21.1 from EC) Escherichia coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown []. Other family members are known to be extracellular []. This family also includes a non-specific, Mg2+-activated ribonuclease precursor (Q03091 from SWISSPROT) [].; GO: 0004518 nuclease activity; PDB: 1OUO_A 1OUP_B 2IVK_C 2VND_A 2PU3_A 2G7F_A 2G7E_A.
Probab=21.54 E-value=2.2e+02 Score=25.76 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 025085 182 RELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQ 232 (258)
Q Consensus 182 ~eLA~aI~~f~e~yer~E~~K~~~m~elEk~Rmef~kdlE~~R~q~~~~~Q 232 (258)
..+|+|+-=|+..|+.+.-.+.+..+=++--+.+=.-+.|++|-+.|...|
T Consensus 157 GdIARa~fYm~~rY~~~~~~~~~~~~l~~W~~~DPVd~~E~~RN~~I~~~Q 207 (218)
T PF04231_consen 157 GDIARAYFYMATRYEGLPLSDQQRQLLLAWHKEDPVDEWERERNNRIYKIQ 207 (218)
T ss_dssp HHHHHHHHHHHHHC-T----HHHHHHHHHHHHHS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCchhHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 489999999999998888888777777777888777889999999888766
No 45
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.68 E-value=3.6e+02 Score=20.44 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025085 189 LKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMN 226 (258)
Q Consensus 189 ~~f~e~yer~E~~K~~~m~elEk~Rmef~kdlE~~R~q 226 (258)
..|...+.-++..+...+.+|++.+.+-.+.|+.+.-+
T Consensus 46 ~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~ 83 (127)
T smart00502 46 AAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLES 83 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788899999999999999998876666665544
No 46
>PRK13694 hypothetical protein; Provisional
Probab=20.50 E-value=1.9e+02 Score=22.81 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025085 183 ELARAILKFGEIYERIESAKQKQMMEL 209 (258)
Q Consensus 183 eLA~aI~~f~e~yer~E~~K~~~m~el 209 (258)
.-++.++.|-|.+||+|.-|....-++
T Consensus 9 va~~~Lr~fIERIERLEeEkk~i~~di 35 (83)
T PRK13694 9 VAKEQLRAFIERIERLEEEKKTISDDI 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999987665443
Done!