Query 025085
Match_columns 258
No_of_seqs 170 out of 249
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 03:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.8 3.7E-21 1.3E-25 146.6 7.8 82 20-105 2-86 (86)
2 3sjm_A Telomeric repeat-bindin 98.0 1.6E-05 5.5E-10 57.5 6.4 53 19-86 8-60 (64)
3 2cu7_A KIAA1915 protein; nucle 97.9 4.6E-05 1.6E-09 55.7 8.0 56 15-88 2-57 (72)
4 2d9a_A B-MYB, MYB-related prot 97.8 4.5E-05 1.6E-09 53.7 6.1 51 17-84 3-53 (60)
5 1x41_A Transcriptional adaptor 97.8 6.6E-05 2.3E-09 53.1 6.5 49 19-84 5-53 (60)
6 2elk_A SPCC24B10.08C protein; 97.7 0.00013 4.6E-09 51.3 7.5 47 22-84 9-55 (58)
7 2yus_A SWI/SNF-related matrix- 97.7 5.8E-05 2E-09 56.8 5.7 50 17-84 13-62 (79)
8 1w0t_A Telomeric repeat bindin 97.7 8.7E-05 3E-09 51.1 5.9 49 23-86 3-51 (53)
9 2dim_A Cell division cycle 5-l 97.7 0.00011 3.6E-09 53.3 6.5 52 15-83 2-53 (70)
10 1guu_A C-MYB, MYB proto-oncoge 97.6 0.00012 4E-09 50.0 5.2 46 22-84 3-48 (52)
11 2yum_A ZZZ3 protein, zinc fing 97.5 0.00022 7.5E-09 52.2 7.0 53 19-83 5-57 (75)
12 1ity_A TRF1; helix-turn-helix, 97.4 0.00038 1.3E-08 50.3 6.6 53 19-86 7-59 (69)
13 2k9n_A MYB24; R2R3 domain, DNA 97.4 0.00045 1.5E-08 53.8 7.4 51 20-88 51-101 (107)
14 2cqr_A RSGI RUH-043, DNAJ homo 97.4 0.00026 8.7E-09 52.7 5.6 54 19-86 15-68 (73)
15 1gvd_A MYB proto-oncogene prot 97.4 0.00022 7.4E-09 48.7 4.8 46 22-84 3-48 (52)
16 3osg_A MYB21; transcription-DN 97.3 0.00025 8.5E-09 56.8 5.4 50 21-88 61-110 (126)
17 2din_A Cell division cycle 5-l 97.3 0.00067 2.3E-08 48.5 6.4 53 19-90 6-58 (66)
18 2ltp_A Nuclear receptor corepr 96.3 4.6E-05 1.6E-09 58.2 0.0 56 16-89 10-65 (89)
19 2llk_A Cyclin-D-binding MYB-li 97.2 0.00028 9.7E-09 52.5 4.2 51 18-87 19-69 (73)
20 2cjj_A Radialis; plant develop 97.2 0.0012 4E-08 51.2 7.5 59 22-94 8-66 (93)
21 1gv2_A C-MYB, MYB proto-oncoge 97.1 0.00037 1.3E-08 53.7 4.1 50 20-87 54-103 (105)
22 2juh_A Telomere binding protei 97.0 0.0045 1.5E-07 50.2 9.6 77 17-108 12-88 (121)
23 2roh_A RTBP1, telomere binding 96.9 0.003 1E-07 51.3 8.1 59 18-89 27-85 (122)
24 2cqq_A RSGI RUH-037, DNAJ homo 96.9 0.0039 1.3E-07 46.0 7.8 55 19-88 5-59 (72)
25 2ckx_A NGTRF1, telomere bindin 96.9 0.0018 6.2E-08 49.2 5.9 53 24-89 2-54 (83)
26 1h8a_C AMV V-MYB, MYB transfor 96.7 0.00065 2.2E-08 54.3 2.4 49 20-86 77-125 (128)
27 2aje_A Telomere repeat-binding 96.6 0.0022 7.4E-08 50.9 5.0 58 17-87 8-65 (105)
28 1wgx_A KIAA1903 protein; MYB D 96.6 0.0044 1.5E-07 46.2 6.2 55 17-85 3-57 (73)
29 3osg_A MYB21; transcription-DN 96.4 0.0049 1.7E-07 49.2 5.5 47 20-84 9-55 (126)
30 1h89_C C-MYB, MYB proto-oncoge 96.3 0.0014 4.9E-08 54.0 2.4 50 19-86 107-156 (159)
31 1h8a_C AMV V-MYB, MYB transfor 96.3 0.0065 2.2E-07 48.4 5.9 48 19-83 24-71 (128)
32 3zqc_A MYB3; transcription-DNA 96.2 0.0023 7.9E-08 51.4 2.8 49 20-86 52-100 (131)
33 2k9n_A MYB24; R2R3 domain, DNA 96.1 0.0078 2.7E-07 46.6 5.4 43 24-83 3-45 (107)
34 1gv2_A C-MYB, MYB proto-oncoge 96.1 0.0063 2.1E-07 46.7 4.8 45 22-83 4-48 (105)
35 2eqr_A N-COR1, N-COR, nuclear 95.9 0.013 4.3E-07 41.5 5.1 47 18-82 8-54 (61)
36 1x58_A Hypothetical protein 49 95.7 0.026 9E-07 40.9 6.1 55 18-87 4-58 (62)
37 1h89_C C-MYB, MYB proto-oncoge 95.6 0.015 5.1E-07 47.8 5.1 48 20-84 56-103 (159)
38 2iw5_B Protein corest, REST co 95.5 0.021 7.2E-07 51.0 6.1 52 19-88 130-181 (235)
39 1ign_A Protein (RAP1); RAP1,ye 95.3 0.014 5E-07 52.4 4.3 53 20-84 6-58 (246)
40 3zqc_A MYB3; transcription-DNA 94.6 0.012 4.2E-07 47.1 1.8 44 24-84 4-47 (131)
41 1ug2_A 2610100B20RIK gene prod 93.0 0.35 1.2E-05 37.6 7.4 62 19-95 30-91 (95)
42 2xag_B REST corepressor 1; ami 91.5 0.26 8.8E-06 48.2 6.1 44 20-81 378-421 (482)
43 2yqk_A Arginine-glutamic acid 90.1 0.61 2.1E-05 33.0 5.5 47 14-78 1-48 (63)
44 1fex_A TRF2-interacting telome 88.5 0.67 2.3E-05 32.6 4.6 52 22-83 2-55 (59)
45 2lr8_A CAsp8-associated protei 84.9 0.19 6.4E-06 37.2 0.0 58 19-92 11-68 (70)
46 3hm5_A DNA methyltransferase 1 83.8 2.5 8.5E-05 32.6 6.0 60 23-95 31-90 (93)
47 4a69_C Nuclear receptor corepr 69.9 3.8 0.00013 31.2 3.5 40 21-78 42-81 (94)
48 1gmj_A ATPase inhibitor; coile 67.8 19 0.00065 27.3 6.9 53 186-239 13-71 (84)
49 2crg_A Metastasis associated p 67.2 8.5 0.00029 27.6 4.7 45 18-80 4-49 (70)
50 4eef_G F-HB80.4, designed hema 63.3 1.2 4.1E-05 33.2 -0.5 48 19-80 17-64 (74)
51 4iej_A DNA methyltransferase 1 46.8 47 0.0016 25.5 6.0 58 23-93 31-88 (93)
52 3oja_B Anopheles plasmodium-re 37.5 1.6E+02 0.0054 27.7 9.4 31 198-228 531-561 (597)
53 3vem_A Helicase protein MOM1; 27.5 92 0.0031 24.8 5.0 13 199-211 56-68 (115)
54 2hzd_A Transcriptional enhance 23.2 1.6E+02 0.0053 22.1 5.3 66 20-91 4-78 (82)
55 1ign_A Protein (RAP1); RAP1,ye 22.5 2.1E+02 0.007 25.6 6.8 37 47-91 167-203 (246)
56 2v4h_A NF-kappa-B essential mo 21.3 3E+02 0.01 21.6 7.3 33 202-237 43-75 (110)
57 1irz_A ARR10-B; helix-turn-hel 21.2 2.3E+02 0.0077 20.1 7.3 59 18-89 3-61 (64)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.84 E-value=3.7e-21 Score=146.59 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=73.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC---C
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP---P 96 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~~---~ 96 (258)
.|...||++||.+||++|++...++..+..+...|++||+.|.+++ |.+|+.||++||++|++.||++|+++ +
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G----~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG 77 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG----FDRSPDMCTDKWRNLLKEFKKAKHHDRGNG 77 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHCSCSSCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3677999999999999999999999988877789999999999864 68999999999999999999999985 3
Q ss_pred CCCCcchHH
Q 025085 97 PSKWPFYYR 105 (258)
Q Consensus 97 ~s~W~fFd~ 105 (258)
+.+|+||+.
T Consensus 78 ~~~~~yf~e 86 (86)
T 2ebi_A 78 SAKMSYYKE 86 (86)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCc
Confidence 569999973
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.96 E-value=1.6e-05 Score=57.49 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKK 86 (258)
......||.+|...|+++.... |. ..|..||..+-- ..||+.||++|+.+|.|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKY------GE---GNWAAISKNYPF------VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHH------CT---TCHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHcc------CC---CchHHHHhhcCC------CCCCHHHHHHHHHHHhc
Confidence 3455689999999999987543 21 259999987621 24899999999999976
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.90 E-value=4.6e-05 Score=55.75 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025085 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (258)
Q Consensus 15 ~~~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrY 88 (258)
+.++......||.+|-..||+++... |+ .|..||..| +.||+.||++++.++-++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~------G~----~W~~Ia~~~--------~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKF------GR----RWTKISKLI--------GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHH--------SSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHH------Cc----CHHHHHHHc--------CCCCHHHHHHHHHHHHHHH
Confidence 34456677799999999999987642 33 699999988 3489999999999875553
No 4
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.79 E-value=4.5e-05 Score=53.65 Aligned_cols=51 Identities=27% Similarity=0.448 Sum_probs=39.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 17 ~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
++......||.+|...|+++.... | ...|..||..|. .||+.||++++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~------G---~~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQF------G---QQDWKFLASHFP--------NRTDQQCQYRWLRV 53 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHT------C---TTCHHHHHHHCS--------SSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHh------C---CCCHHHHHHHcc--------CCCHHHHHHHHHHH
Confidence 345667799999999999987642 2 136999999983 38999999998764
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.75 E-value=6.6e-05 Score=53.12 Aligned_cols=49 Identities=24% Similarity=0.469 Sum_probs=38.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
.-....||.+|-..||++.... | ...|..||..|. .||+.||++++.+.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~------G---~~~W~~Ia~~~~--------~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDC------G---FGNWQDVANQMC--------TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHT------C---TTCHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------C---cCcHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 4556689999999999986432 2 136999999993 38999999998754
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.71 E-value=0.00013 Score=51.32 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 22 ~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
...||.+|-..||++.... | ...|..||..|.. .||+.||++++.++
T Consensus 9 ~~~WT~eED~~L~~~v~~~------G---~~~W~~IA~~~~~-------~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETL------G---LGNWADIADYVGN-------ARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT------T---TTCHHHHHHHHCS-------SCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHHCC-------CCCHHHHHHHHHHH
Confidence 4479999999999987542 2 1369999999931 48999999998764
No 7
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.69 E-value=5.8e-05 Score=56.78 Aligned_cols=50 Identities=30% Similarity=0.469 Sum_probs=38.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 17 ~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
........||.+|...||++... + | ..|..||..|. .||+.||++++.+|
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~----~--G----~~W~~IA~~v~--------~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEM----Y--K----DDWNKVSEHVG--------SRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHH----S--S----SCHHHHHHHHS--------SCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHH----h--C----CCHHHHHHHcC--------CCCHHHHHHHHHHh
Confidence 34555679999999999998643 1 2 36999999993 38999999987644
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.66 E-value=8.7e-05 Score=51.09 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025085 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (258)
Q Consensus 23 ~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKK 86 (258)
..||.+|...|+++.... |. ..|..||..|.- ..+|+.||++|+.+|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF------NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHH------CT---TCHHHHHHHSCC------SSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH------Cc---CCHHHHHHHcCC------CCCCHHHHHHHHHHHHc
Confidence 479999999999987643 21 269999999831 14899999999999875
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=0.00011 Score=53.35 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 15 ~~~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
+.++......||.+|-..|+++.... |. ..|..||..|. .||+.||++++.+
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKY------GK---NQWSRIASLLH--------RKSAKQCKARWYE 53 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHT------CS---SCHHHHHHHST--------TCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH------Cc---CCHHHHHHHhc--------CCCHHHHHHHHHH
Confidence 44556677799999999999887642 21 36999999984 3899999999865
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.55 E-value=0.00012 Score=50.03 Aligned_cols=46 Identities=26% Similarity=0.596 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 22 ~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
...||.+|-..|+++.... |+ ..|..||..|. .||+.||++++.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN------GT---DDWKVIANYLP--------NRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHTST--------TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CCHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3589999999999988652 32 25999999883 48999999998875
No 11
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=0.00022 Score=52.24 Aligned_cols=53 Identities=11% Similarity=0.327 Sum_probs=38.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
......||.+|-..|+++... ++.+......|..||..|. .||+.||++++.+
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~--------~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG--------NRTAKQVASQVQK 57 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS--------SSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 444568999999999988643 2222111257999999993 3899999999943
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.40 E-value=0.00038 Score=50.29 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKK 86 (258)
......||.+|...|+++.... |. ..|..||..|.- ..||+.||++|+.++.+
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF------NNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------CC---CcHHHHHHHcCc------CCCCHHHHHHHHHHHcC
Confidence 4566789999999999987642 21 269999998831 14899999999998764
No 13
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.40 E-value=0.00045 Score=53.76 Aligned_cols=51 Identities=20% Similarity=0.402 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrY 88 (258)
.....||.+|-..||+++... |+ .|..||..| +.||+.||++++.+|.++-
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEY------GP----KWNKISKFL--------KNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHH--------SSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHh------Cc----CHHHHHHHC--------CCCCHHHHHHHHHHHHhhH
Confidence 345689999999999987653 32 599999988 3489999999999998763
No 14
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.39 E-value=0.00026 Score=52.67 Aligned_cols=54 Identities=26% Similarity=0.471 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKK 86 (258)
......||.+|..+|+.+... +..+ ....|..||..| +.||+.||++++.+|..
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~----~g~~--~~~rW~~IA~~v--------pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQ----YPRG--SSDCWDKIARCV--------PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHH----SCSS--SHHHHHHHGGGC--------SSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence 445568999999999988653 2212 235699999998 34899999999998853
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.38 E-value=0.00022 Score=48.74 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 22 ~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
...||.+|...|+++.... |+ ..|..||..|. .||+.||++++.+.
T Consensus 3 k~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST--------TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------Cc---ChHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3589999999999987642 22 36999999873 38999999998753
No 16
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.33 E-value=0.00025 Score=56.82 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025085 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (258)
Q Consensus 21 r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrY 88 (258)
....||.+|...||+++... | ..|..||..| +.||+.||++++.+|.++.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~------G----~~W~~Ia~~l--------~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEY------G----RQWAIIAKFF--------PGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------C----SCHHHHHTTS--------TTCCHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHH------C----cCHHHHHHHc--------CCCCHHHHHHHHHHHHHhc
Confidence 44589999999999998654 3 2499999866 3489999999999998874
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.00067 Score=48.50 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=40.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~ 90 (258)
......||.+|-..||++... -|+ .|..||. +- .||+.||++++.++-+.-.+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~------~g~----~W~~Ia~-~~--------gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKL------MPT----QWRTIAP-II--------GRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHH------CTT----CHHHHHH-HH--------SSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH------cCC----CHHHHhc-cc--------CcCHHHHHHHHHHHhChHhc
Confidence 345568999999999998432 132 6999999 63 28999999999988665433
No 18
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.32 E-value=4.6e-05 Score=58.24 Aligned_cols=56 Identities=29% Similarity=0.390 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025085 16 TTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (258)
Q Consensus 16 ~~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK 89 (258)
.++......||.+|-..||+++... |+ .|..||..|. .||+.||++++.++.+++.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~------G~----~W~~IA~~l~--------gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEH------GR----NWSAIARMVG--------SKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3445666789999999999988653 32 5999999983 3899999999998887754
No 19
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.22 E-value=0.00028 Score=52.46 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=41.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025085 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (258)
Q Consensus 18 g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKr 87 (258)
+......||.+|-..||+++... |+ .|..||..| . ||+.|||+++..|++.
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~------G~----kW~~IA~~l-g--------Rt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKH------GN----DWATIGAAL-G--------RSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHH------SS----CHHHHHHHH-T--------SCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------CC----CHHHHHHHh-C--------CCHHHHHHHHHHHHHH
Confidence 35566799999999999988542 32 399999999 4 7999999999988653
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.18 E-value=0.0012 Score=51.23 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 025085 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (258)
Q Consensus 22 ~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~ 94 (258)
...||.+|-.+|+.+... +..+ ....|..||..| +.||+.||++++.+|...-+.+...
T Consensus 8 ~~~WT~eEd~~L~~al~~----~~~~--~~~rW~~IA~~v--------pGRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----YDKD--TPDRWANVARAV--------EGRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----SCTT--CTTHHHHHHHHS--------TTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 457999999999887542 2222 124699999999 3489999999999998776655443
No 21
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.12 E-value=0.00037 Score=53.73 Aligned_cols=50 Identities=24% Similarity=0.502 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKr 87 (258)
.....||.+|-..|++++... |+ .|..||..| +.||+.||++++.+|.++
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH------SS----CHHHHHTTC--------TTCCHHHHHHHHHHHTC-
T ss_pred ccccCCCHHHHHHHHHHHHHh------CC----CHHHHHHHc--------CCCCHHHHHHHHHHHHhc
Confidence 445689999999999997653 32 599999766 348999999999988654
No 22
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.01 E-value=0.0045 Score=50.24 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCCC
Q 025085 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPP 96 (258)
Q Consensus 17 ~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~~~ 96 (258)
+.+-....||.+|..+|++..... +.| .|..||....... ..||+.||++|+.||.+.-......
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~----G~G-----~W~~Ia~~~~~~f----~~RT~v~lKdRWrnllk~~~~~p~~-- 76 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHL----GTG-----RWRDVKMRAFDNA----DHRTYVDLKDKWKTLVHTASIAPQQ-- 76 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHH----GGG-----CHHHHHHHHCSCC----SSCCSHHHHHHHHHHHHHHHTCSTT--
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHH----CCC-----CHHHHHHHhcccc----CCCCHHHHHHHHHHHHhhhccCCcc--
Confidence 346667799999999999887643 222 6999999875321 3599999999999999874332221
Q ss_pred CCCCcchHHHHH
Q 025085 97 PSKWPFYYRLDS 108 (258)
Q Consensus 97 ~s~W~fFd~LD~ 108 (258)
...|+|=+.++.
T Consensus 77 krg~~~p~e~~~ 88 (121)
T 2juh_A 77 RRGEPVPQDLLD 88 (121)
T ss_dssp CCCSCCCHHHHH
T ss_pred cCCCCCCHHHHH
Confidence 335677666544
No 23
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.93 E-value=0.003 Score=51.28 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=45.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025085 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (258)
Q Consensus 18 g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK 89 (258)
.+-....||.+|+.+|++..... +.| .|..|+....... ..||++|||+||.||.+.-.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~----G~g-----~W~~I~~~~~~~~----~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHL----GTG-----RWRDVKFRAFENV----HHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH----SSS-----CHHHHHHHHHSSS----CCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CCC-----ChHHHHHHhcccc----CCCCHHHHHHHHHHHHhhcc
Confidence 35667799999999999987643 222 5999999764322 35999999999999987543
No 24
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.90 E-value=0.0039 Score=46.03 Aligned_cols=55 Identities=15% Similarity=0.351 Sum_probs=42.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrY 88 (258)
......||.+|-.+|+.+.. .+..|. ..-|+.||..|. ||..||+++++.|++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~lg---------Rt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHELG---------RSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHHT---------SCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHhC---------CCHHHHHHHHHHHHHhc
Confidence 34455899999999998864 233332 245999999982 79999999999998764
No 25
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.87 E-value=0.0018 Score=49.16 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025085 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (258)
Q Consensus 24 ~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK 89 (258)
.||.+|..+|++..... +.| .|..|+..--... ..||+.|||+|+.||.++-.
T Consensus 2 ~WT~eEd~~L~~gv~k~----G~g-----~W~~I~~~~~~~~----~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL----GTG-----RWRDVKMRAFDNA----DHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHH----CSS-----CHHHHHHHHCTTC----TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----CCC-----CcHHHHHhhcccc----CCCCHHHHHHHHHHHHHhcc
Confidence 69999999999887642 222 5999998632111 35999999999999987543
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.70 E-value=0.00065 Score=54.26 Aligned_cols=49 Identities=24% Similarity=0.502 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKK 86 (258)
.....||.+|-..|++++... |+ .|..||..| +.||+.||++++.+|.+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------CS----CHHHHGGGS--------TTCCHHHHHHHHHTTTT
T ss_pred cccccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHC--------CCCCHHHHHHHHHHHHh
Confidence 345689999999999998653 32 599999876 34899999999988754
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.64 E-value=0.0022 Score=50.85 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=42.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025085 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (258)
Q Consensus 17 ~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKr 87 (258)
+.+-....||.+|+.+|++..... +.| .|..|+...-... ..||++||++|+.||.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~----G~g-----~W~~I~~~~~~~f----~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKL----GTG-----RWRDVKLCAFEDA----DHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHH----CSS-----SHHHHHSSSSSST----TCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHh----CCC-----ChHHHHHHhcccc----CCCCHHHHHHHHHHHHhh
Confidence 346677799999999999887642 222 5999987542111 359999999999999874
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.61 E-value=0.0044 Score=46.17 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=39.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025085 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (258)
Q Consensus 17 ~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LK 85 (258)
+|-.....||.+|..+|..|.. .+..+ ...-|+.||..|- .||..||+.+++.|.
T Consensus 3 ~~~~~~~~WT~eE~k~fe~ALa----~~~~~--tp~rWe~IA~~V~--------gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 3 SGSSGDKEWNEKELQKLHCAFA----SLPKH--KPGFWSEVAAAVG--------SRSPEECQRKYMENP 57 (73)
T ss_dssp CCCCSSSCCCHHHHHHHHHHHH----HSCSS--SSSHHHHHHHHTT--------TSCHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHH----HCCCC--CccHHHHHHHHcC--------CCCHHHHHHHHHHHH
Confidence 3445567899999999998854 22222 1236999999993 389999998777663
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.36 E-value=0.0049 Score=49.20 Aligned_cols=47 Identities=21% Similarity=0.469 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
.....||.+|...|+++.... |. .|..||..|. .||+.||+.++.+.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~------G~----~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQH------GS----DWKMIAATFP--------NRNARQCRDRWKNY 55 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH------TT----CHHHHHHTCT--------TCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHh------CC----CHHHHHHHcC--------CCCHHHHHHHHhhh
Confidence 445589999999999988653 32 6999998873 48999999998763
No 30
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.34 E-value=0.0014 Score=53.98 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=39.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKK 86 (258)
......||.+|-..||+++... |+ .|..||..| +.||+.||+|++..|.+
T Consensus 107 ~~~~~~WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l--------~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 107 EVKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHH------CS----CHHHHHTTS--------TTCCHHHHHHHHHTTTC
T ss_pred cccccCCChHHHHHHHHHHHHH------CC----CHHHHHHHC--------CCCCHHHHHHHHHHHHh
Confidence 3456789999999999998643 32 599999866 34899999999988754
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.30 E-value=0.0065 Score=48.35 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=37.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
......||.+|...|+++.... |. ..|..||..|. .||+.||++++.+
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKY------GP---KRWSDIAKHLK--------GRIGKQCRERWHN 71 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHT------CS---CCHHHHHHHSS--------SCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------CC---CCHHHHHHHhc--------CCcHHHHHHHHHH
Confidence 3445689999999999987542 21 35999999883 3899999998865
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.19 E-value=0.0023 Score=51.36 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKK 86 (258)
.....||.+|-..||+++... | ..|..||..| +.||+.||++++.++.+
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~------G----~~W~~Ia~~l--------~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKL------G----SKWSVIAKLI--------PGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHS------C----SCHHHHTTTS--------TTCCHHHHHHHHHHTTG
T ss_pred ccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence 344589999999999987532 2 2499999876 34899999999876543
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.13 E-value=0.0078 Score=46.62 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 24 ~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
.||.+|...|+++.... |. ..|..||..|. .||+.||+.++.+
T Consensus 3 ~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRY------GA---KDWIRISQLMI--------TRNPRQCRERWNN 45 (107)
T ss_dssp SSCHHHHHHHHHHHHHH------CS---SCHHHHHHHTT--------TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH------CC---CCHHHHhhhcC--------CCCHHHHHHHHHH
Confidence 69999999999887542 21 36999999883 3899999988765
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.12 E-value=0.0063 Score=46.71 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025085 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 22 ~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
...||.+|...|+.+.... |. ..|..||..|. .||+.||+.++.+
T Consensus 4 k~~WT~eED~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST--------TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CcHHHHhhhhc--------CCCHHHHHHHHHh
Confidence 3479999999999987542 21 35999998873 4899999988765
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.89 E-value=0.013 Score=41.50 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=37.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHH
Q 025085 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRID 82 (258)
Q Consensus 18 g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid 82 (258)
.+.....||++|-..+++++... | +.|..||..| +.||..||....-
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~------g----k~w~~Ia~~l--------~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQH------P----KNFGLIASYL--------ERKSVPDCVLYYY 54 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHS------T----TCHHHHHHHC--------TTSCHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHh------C----CCHHHHHHHc--------CCCCHHHHHHHHH
Confidence 45667899999999999988753 2 4799999777 3489999986543
No 36
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.67 E-value=0.026 Score=40.85 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=42.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025085 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (258)
Q Consensus 18 g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKr 87 (258)
|....-.||++|+.+||+-.... |+ .|..|+..-.- -..||.+.-++|+.+|.|.
T Consensus 4 ~~~~r~~WT~EE~~~L~~gV~k~------G~----~W~~I~~~y~f-----~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 4 GSSGRKDFTKEEVNYLFHGVKTM------GN----HWNSILWSFPF-----QKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHH------CS----CHHHHHHHSCC-----CTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------hH----hHHHHHHhCCC-----ccCcccchHHHHHHHHHhc
Confidence 34567799999999999987654 32 69999975432 1359999999999999863
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.56 E-value=0.015 Score=47.81 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
.....||.+|...|++++... |. ..|..||..|. .||+.||++++.+.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHNH 103 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------CS---CCHHHHHHTST--------TCCHHHHHHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHh------Cc---ccHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 345689999999999987542 22 35999998873 48999999988653
No 38
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.47 E-value=0.021 Score=51.01 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrY 88 (258)
......||++|...++++.... | ++|..||..|- .||..||++-+-+-|++|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kY------G----KDW~~IAk~Vg--------TKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKY------G----RDFQAISDVIG--------NKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHH------S----SCHHHHHHHHS--------SCCHHHHHHHHHHTTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHcC--------CCCHHHHHHHHHHHHHHh
Confidence 3456699999999999876542 2 36999999983 489999999876555543
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.27 E-value=0.014 Score=52.41 Aligned_cols=53 Identities=9% Similarity=0.211 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
-....||.+|-..||++....-. ....++.|.+||..| +.+|+.|||++|.++
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn----~r~ghk~W~~IAk~L--------pGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPT----RRTTHTLYDEISHYV--------PNHTGNSIRHRFRVY 58 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGG----GTTCSHHHHHHTTTS--------TTSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCc----CccccccHHHHHHHc--------CCCCHHHHHHHHHHH
Confidence 44568999999999999876211 111235699999866 458999999999983
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.58 E-value=0.012 Score=47.10 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025085 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (258)
Q Consensus 24 ~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~L 84 (258)
.||.+|...|+++.... |. ..|..||..| +.||+.||+.++.+.
T Consensus 4 ~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~~--------~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKEN------GP---QNWPRITSFL--------PNRSPKQCRERWFNH 47 (131)
T ss_dssp SCCHHHHHHHHHHHHHH------CS---CCGGGGTTSC--------TTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------Cc---CCHHHHHHHH--------CCCCHHHHHHHHhhc
Confidence 69999999999876543 21 2699999877 348999999987653
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.04 E-value=0.35 Score=37.58 Aligned_cols=62 Identities=13% Similarity=0.344 Sum_probs=50.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~~ 95 (258)
+..-..||.++-..+|.++..+ |. ..+.|..||..+.. ||..|.++||..|-+-|.+.....
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~------G~-s~~tFa~iA~~L~N--------ks~nqV~~RFq~Lm~Lf~~~~~~~ 91 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQ------GA-QPHTFSVISQQLGN--------KTPVEVSHRFRELMQLFHTACESG 91 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHT------TS-CTTTHHHHHHHHSS--------CCHHHHHHHHHHHHHHHHHCSSSC
T ss_pred CCEEEEeccccCHHHHHHHHhc------CC-ChhHHHHHHHHHcc--------CCHHHHHHHHHHHHHHHHHHhccC
Confidence 6677899999999999988753 32 24579999999953 799999999999999999876543
No 42
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=91.51 E-value=0.26 Score=48.17 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=35.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRI 81 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Ki 81 (258)
.....||++|..++++++... | ++|..||+.|. .||..||++=+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~y------G----kdw~~IA~~Vg--------TKT~~Qvk~fy 421 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKY------G----RDFQAISDVIG--------NKSVVQVKNFF 421 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------T----TCHHHHHHHHS--------SCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHhC--------CCCHHHHHHHH
Confidence 456799999999999886632 2 37999999993 38999999854
No 43
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.08 E-value=0.61 Score=33.00 Aligned_cols=47 Identities=17% Similarity=0.445 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHH-HHcccCCCCCCCChHHHH
Q 025085 14 AATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAES-VNSRENGVKPKKTDIQCK 78 (258)
Q Consensus 14 ~~~~g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~-V~~r~~~~k~~kT~~QCr 78 (258)
|+.+++.....||++|...+.+++.. . .++|..|+.. | ..||..||.
T Consensus 1 ~~~~p~~~~~~WT~eE~~~Fe~~l~~----y------GKdf~~I~~~~v--------~~Kt~~~~v 48 (63)
T 2yqk_A 1 GSSGSSGIEKCWTEDEVKRFVKGLRQ----Y------GKNFFRIRKELL--------PNKETGELI 48 (63)
T ss_dssp CCCCCCCCCCSCCHHHHHHHHHHHHH----T------CSCHHHHHHHSC--------TTSCHHHHH
T ss_pred CCCCCCcCCCCcCHHHHHHHHHHHHH----h------CccHHHHHHHHc--------CCCcHHHHH
Confidence 35566777889999999888776542 1 2369899885 5 348999995
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=88.46 E-value=0.67 Score=32.61 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCC-ChhhHHHHHH-HHHcccCCCCCCCChHHHHHHHHH
Q 025085 22 EDCWSEGATGTLIEAWGDRYVRLNRGHL-RQKDWKEVAE-SVNSRENGVKPKKTDIQCKNRIDT 83 (258)
Q Consensus 22 ~~~WSe~ET~~LIeawger~~~l~rg~L-R~k~W~eVA~-~V~~r~~~~k~~kT~~QCr~Kid~ 83 (258)
...+|.++-..|++--.+ +.... +.+ .+++|+++|+ .+ +..|+.+||+++.+
T Consensus 2 R~~FT~edD~~L~~~v~~-~~~~~-~~~~Gn~iwk~la~~~~--------~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKE-NARSP-SSVTGNALWKAMEKSSL--------TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-TCCST-TTTTSSHHHHHHHHSCS--------SSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-hcccc-CCCccHHHHHHHHHhHC--------CCCCHHHHHHHHHH
Confidence 357899999888874432 22111 233 3589999999 44 45799999998753
No 45
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=84.94 E-value=0.19 Score=37.18 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEK 92 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK 92 (258)
|..-..||.++-..+|..+.++ |. ..+.|..||..++ ||+.|..+||..|-+-|.+-|
T Consensus 11 ge~vvlWTReeDR~IL~~cq~~------G~-s~~tfa~iA~~Ln---------ks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQKR------GP-SSKTFAYLAAKLD---------KNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 4556789999999999887654 32 2357989998883 689999999999999998755
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=83.76 E-value=2.5 Score=32.61 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC
Q 025085 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (258)
Q Consensus 23 ~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~~~ 95 (258)
..||.+||..|++....-.+ .|--|++...-.. ...||..+-|+|+-.+-++..+.+..+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----------RW~vI~DRy~~~~---~~~Rt~EdLK~RyY~v~~~l~~~r~~~ 90 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQQ---FKKRSVEDLKERYYHICAKLANVRAVP 90 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHSCTTT---SCCCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CeeeehhhhccCC---CCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 69999999999998765332 3777888875211 135999999999999999888877543
No 47
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=69.89 E-value=3.8 Score=31.18 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHH
Q 025085 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCK 78 (258)
Q Consensus 21 r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr 78 (258)
..+.||++|...+.+++... .++|..||..| +.||..||-
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l--------~~Kt~~~cV 81 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQH----------PKNFGLIASFL--------ERKTVAECV 81 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTC--------TTCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHc--------CCCCHHHHH
Confidence 35689999988888777532 35788898766 358999996
No 48
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=67.81 E-value=19 Score=27.29 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Q 025085 186 RAILKFGEIYERIESA------KQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSK 239 (258)
Q Consensus 186 ~aI~~f~e~yer~E~~------K~~~m~elEk~Rmef~kdlE~~R~q~~~~~Q~ei~~~k 239 (258)
.+|+.-|.+|-+.|.| ++++...|.+.|.....+|+.+.-+ |.+-|-+|.+.+
T Consensus 13 gsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~e-i~~le~~i~rhk 71 (84)
T 1gmj_A 13 GAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKE-IERLQKEIERHK 71 (84)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4566666666666666 5566777777786666666665544 455555555443
No 49
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=67.21 E-value=8.5 Score=27.60 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=32.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHH-HHcccCCCCCCCChHHHHHH
Q 025085 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAES-VNSRENGVKPKKTDIQCKNR 80 (258)
Q Consensus 18 g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~-V~~r~~~~k~~kT~~QCr~K 80 (258)
.+.....||++|...+.+++... .++|..|+.. | +.||..||..=
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v--------~~Kt~~~~v~f 49 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKY----------GKDFNDIRQDFL--------PWKSLTSIIEY 49 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHT----------CSCHHHHHHTTC--------SSSCHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHh----------CccHHHHHHHHc--------CCCCHHHHHHH
Confidence 45777899999998887765421 2368889873 5 34899999743
No 50
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=63.26 E-value=1.2 Score=33.21 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=30.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHH
Q 025085 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNR 80 (258)
Q Consensus 19 ~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~K 80 (258)
.+....||.++-.+|-.|-.-. ..+. ..-|+.||..| +.||..+|+..
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~y----p~~t--pdRWekIA~~V--------pGKT~eEVk~h 64 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFT----NKDT--PDRWKKVAQYV--------KGRTPEEVKKH 64 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSS----CSSC--CSSSTTTGGGS--------CSSCHHHHHGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHC----CCCC--CcHHHHHHHHc--------CCCCHHHHHHH
Confidence 3445689999999988775321 2221 23499999998 34899999754
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=46.78 E-value=47 Score=25.50 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 025085 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKA 93 (258)
Q Consensus 23 ~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~eK~ 93 (258)
+.||.+||..|.+.-.+-. | -|--|++...-.. ...||..+-|.++=.+-++.-+.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fd-------l---Rw~vI~DRy~~~~---~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-------L---RFVVIHDRYDHQQ---FKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-------T---CHHHHHHHCCTTT---SCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcC-------C---CeEEEeeccccCC---CCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 5899999999998866532 2 3767777764311 1357877777776666665555543
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.49 E-value=1.6e+02 Score=27.74 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 025085 198 IESAKQKQMMELEKERLEFIKDVECERMNMF 228 (258)
Q Consensus 198 ~E~~K~~~m~elEk~Rmef~kdlE~~R~q~~ 228 (258)
-.+.++++...+|+.+.+..+.++.++.+++
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 3345566666666888887788888877766
No 53
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=27.51 E-value=92 Score=24.82 Aligned_cols=13 Identities=38% Similarity=0.383 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 025085 199 ESAKQKQMMELEK 211 (258)
Q Consensus 199 E~~K~~~m~elEk 211 (258)
|..|++--.|.|+
T Consensus 56 E~kklqLkse~e~ 68 (115)
T 3vem_A 56 EEKKSILKAELER 68 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445554444333
No 54
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=23.23 E-value=1.6e+02 Score=22.07 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHHhh------HHHhh-hcCCC--ChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025085 20 GREDCWSEGATGTLIEAWGD------RYVRL-NRGHL--RQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (258)
Q Consensus 20 ~r~~~WSe~ET~~LIeawge------r~~~l-~rg~L--R~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~ 90 (258)
..+.-|++.--.+++++-.- +.+.+ ..|.+ ||. -||+-+..+++ ..+|.+||-..|..||+..+.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNe---lIs~yI~~~tG---k~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNE---LIARYIKLRTG---KTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHH---HHHHHHHHHHS---CCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhH---HHHHHHHHHHc---ccCCccchhHHHHHHHHHHhh
Confidence 34568998888888886643 12222 23433 333 38888887764 469999999999999998765
Q ss_pred h
Q 025085 91 E 91 (258)
Q Consensus 91 e 91 (258)
+
T Consensus 78 ~ 78 (82)
T 2hzd_A 78 D 78 (82)
T ss_dssp C
T ss_pred h
Confidence 4
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=22.52 E-value=2.1e+02 Score=25.55 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 025085 47 GHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIE 91 (258)
Q Consensus 47 g~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK~e 91 (258)
|++.-..|++||+.. +..|+..-|+|+.++-+.|-..
T Consensus 167 gp~~~~~fk~ia~~~--------P~HT~~SWRdRyrKfl~~~gi~ 203 (246)
T 1ign_A 167 GPIAREFFKHFAEEH--------AAHTENAWRDRFRKFLLAYGID 203 (246)
T ss_dssp CCCCTTHHHHHHHHT--------TTSCHHHHHHHHHHTHHHHCHH
T ss_pred CcchHHHHHHHHHHC--------CCCChhhHHHHHHHHHhhcChH
Confidence 445555899999987 4579999999999998888444
No 56
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.25 E-value=3e+02 Score=21.61 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 025085 202 KQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQK 237 (258)
Q Consensus 202 K~~~m~elEk~Rmef~kdlE~~R~q~~~~~Q~ei~~ 237 (258)
||.+..+|...-.. ++-++.++++| ++|++|=+
T Consensus 43 Kq~~idelk~ei~q--~~~~lE~I~vL-kaQv~IY~ 75 (110)
T 2v4h_A 43 KQELIDKLKEEAEQ--HKIVMETVPVL-KAQADIYK 75 (110)
T ss_dssp HHHHHHHHHHHHHH--HHHHHTHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHH
Confidence 44444444432222 34455667755 77877744
No 57
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=21.18 E-value=2.3e+02 Score=20.09 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=42.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025085 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (258)
Q Consensus 18 g~~r~~~WSe~ET~~LIeawger~~~l~rg~LR~k~W~eVA~~V~~r~~~~k~~kT~~QCr~Kid~LKKrYK 89 (258)
...+...||++.-..+++|.. +++ .....|..|.+.|+.. ..|-.|++..+.+-+-..+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~----~LG---~~~AtPk~Il~~M~v~------gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVD----HLG---VERAVPKKILDLMNVD------KLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHH----HHC---TTTCCHHHHHHHHCCT------TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHH----HhC---CCCCCcHHHHHHcCCC------CCCHHHHHHHHHHHHHHHH
Confidence 356788999999988888876 333 2234588899999752 3799999988876554443
Done!