Your job contains 1 sequence.
>025088
MLIKITRSTLSKSLNLQLRCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRA
SPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFD
LEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVS
PGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLLRSKD
EPVCKIAGGRASDQKKSK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025088
(258 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2174979 - symbol:AT5G66860 species:3702 "Arabi... 418 3.7e-39 1
TIGR_CMR|ECH_0142 - symbol:ECH_0142 "ribosomal 5S rRNA E-... 164 3.2e-12 1
TIGR_CMR|SPO_0812 - symbol:SPO_0812 "ribosomal protein L2... 155 3.9e-11 1
TIGR_CMR|APH_1302 - symbol:APH_1302 "ribosomal 5S rRNA E-... 148 2.6e-09 1
TIGR_CMR|CBU_1840 - symbol:CBU_1840 "ribosomal 5S rRNA E-... 148 1.1e-08 1
TIGR_CMR|NSE_0306 - symbol:NSE_0306 "ribosomal 5S rRNA E-... 125 1.5e-08 2
TIGR_CMR|GSU_0662 - symbol:GSU_0662 "ribosoma protein L25... 115 5.6e-05 1
>TAIR|locus:2174979 [details] [associations]
symbol:AT5G66860 species:3702 "Arabidopsis thaliana"
[GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR011035 GO:GO:0005739 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0004812
EMBL:AB010700 KO:K02897 Gene3D:2.170.120.20 Gene3D:2.40.240.10
InterPro:IPR020056 InterPro:IPR020057 SUPFAM:SSF50715 EMBL:AY054545
EMBL:AY064668 IPI:IPI00546047 RefSeq:NP_201487.1 UniGene:At.24321
ProteinModelPortal:Q9FKZ4 SMR:Q9FKZ4 STRING:Q9FKZ4 PaxDb:Q9FKZ4
PRIDE:Q9FKZ4 DNASU:836820 EnsemblPlants:AT5G66860.1 GeneID:836820
KEGG:ath:AT5G66860 TAIR:At5g66860 eggNOG:NOG145694
HOGENOM:HOG000238024 InParanoid:Q9FKZ4 OMA:HIPPKIE PhylomeDB:Q9FKZ4
ProtClustDB:CLSN2686885 Genevestigator:Q9FKZ4 Uniprot:Q9FKZ4
Length = 249
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 93/203 (45%), Positives = 128/203 (63%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQE----DGQHGG--NKRLISVQTNQIRKL 105
+TI AIPR + G VS ++R GR+P++VF Q D G K+L++ QI+ +
Sbjct: 34 QTIQAIPREATGRGVSARDRTIGRIPAVVFPQSLLDTDASKRGVSRKQLLTADKKQIKSI 93
Query: 106 VGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEAL 165
+ +G FF S F L++R+ GS L+E RVLP KVH T LN+ F+ A
Sbjct: 94 IDSVGLPFFCSTTFQLQIRAGQGSSTLVESGRVLPLKVHRDEETGKILNLVFVWADDGEK 153
Query: 166 LKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAG 225
LK+DVP+VF+G D PGL+KGG L TI+ T+K L PA+ +P I+VD+S LD+E K+L
Sbjct: 154 LKVDVPVVFKGLDHCPGLQKGGNLRTIRSTLKLLGPAEHIPSKIEVDVSNLDIEDKVLLQ 213
Query: 226 DLKVHPALKLLRSKDE--PVCKI 246
D+ HP+LKLL SK+E PVCKI
Sbjct: 214 DVVFHPSLKLL-SKNETMPVCKI 235
>TIGR_CMR|ECH_0142 [details] [associations]
symbol:ECH_0142 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000315 "organellar large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897
OMA:ANVHAPR ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:YP_506970.1
ProteinModelPortal:Q2GHW3 STRING:Q2GHW3 GeneID:3926939
KEGG:ech:ECH_0142 PATRIC:20575829
BioCyc:ECHA205920:GJNR-142-MONOMER Uniprot:Q2GHW3
Length = 210
Score = 164 (62.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 52/200 (26%), Positives = 92/200 (46%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRL 118
R + GT S R +G +P++++ G + +S+ + R+ V + + L
Sbjct: 14 RKNVGTGPSRALRLSGEIPAVIY-------GKGRDSLSISLSN-REFVSKYRSAALSTHL 65
Query: 119 FDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDD 178
+LE+ ++ K VL R V H TD +V F +KI+VPL+F +
Sbjct: 66 IELEIDNK--------KEYVLMRDVQKHPVTDRIQHVDFQFIDYGTEIKIEVPLIFTNEQ 117
Query: 179 VSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLLRS 238
G+++GG LN + RT+ C + I++DLS L I DLK+ P + +
Sbjct: 118 KCIGIKRGGVLNILHRTLSIKCSPKAILQNIEIDLSGLTTGHSIHVSDLKLPPEVNVTMK 177
Query: 239 KDEPVCKIAGGRASDQKKSK 258
+ P + AS +K+++
Sbjct: 178 EHNPAI-VTISSASTEKEAE 196
>TIGR_CMR|SPO_0812 [details] [associations]
symbol:SPO_0812 "ribosomal protein L25" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006950 "response to stress" evidence=ISS] [GO:0008097 "5S rRNA
binding" evidence=ISS] HAMAP:MF_01334 InterPro:IPR001021
InterPro:IPR011035 InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907
KO:K02897 ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:YP_166065.1
ProteinModelPortal:Q5LV90 GeneID:3194994 KEGG:sil:SPO0812
PATRIC:23374901 OMA:RDFTMHV Uniprot:Q5LV90
Length = 207
Score = 155 (59.6 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 54/195 (27%), Positives = 92/195 (47%)
Query: 54 ILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRL-ISVQTNQIRKLVGHLGRS 112
++A+ R G + + R+ G VP IVF G G N+ L I + N++ K++ GR
Sbjct: 8 LVALERTGTGKGAARQARRDGMVPGIVF----G--GDNEPLPIQIPFNRLLKML-KAGR- 59
Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
F S LF+L+V E VRV+ R V D P ++ +R + +K+ + +
Sbjct: 60 -FKSTLFNLKVEGH-------EDVRVICRDVQRDVVKDLPTHLDLMRLRRTSRIKLFIHV 111
Query: 173 VFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPA 232
F +PGL+KGG L ++ V+ A +P I VDL+ L++ + + +
Sbjct: 112 DFVNHAAAPGLKKGGVLTVVRPEVELEVTAGDIPESITVDLTGLNIGDVVTISSVTLPAG 171
Query: 233 LKLLRSKDEPVCKIA 247
K +D + I+
Sbjct: 172 AKPTVERDFVIANIS 186
>TIGR_CMR|APH_1302 [details] [associations]
symbol:APH_1302 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000315 "organellar large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0008097 RefSeq:YP_505816.1 ProteinModelPortal:Q2GII5
STRING:Q2GII5 GeneID:3931047 KEGG:aph:APH_1302 PATRIC:20951400
eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897 OMA:ANVHAPR
ProtClustDB:PRK05618 BioCyc:APHA212042:GHPM-1304-MONOMER
Gene3D:2.170.120.20 Gene3D:2.40.240.10 InterPro:IPR020056
InterPro:IPR020057 SUPFAM:SSF50715 TIGRFAMs:TIGR00731
Uniprot:Q2GII5
Length = 211
Score = 148 (57.2 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 48/200 (24%), Positives = 102/200 (51%)
Query: 63 GTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV-SRLFDL 121
GT + R G +P++++ G N+ I++ +Q+ L R+F + S+L +L
Sbjct: 18 GTGSARALRARGLIPAVIY-------GKNRDPINISLSQVDFL--KKCRTFPIFSKLIEL 68
Query: 122 EVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSP 181
+ G+ +K V+ + + H + A +V F +A +K++VPLVF +
Sbjct: 69 CI------GE--KKEYVITKDIQKHPVSGAIAHVDFQFVDQDAEMKMEVPLVFLNEQKCV 120
Query: 182 GLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLLRSKDE 241
G+++GG +N + R++ C +P ++VDL ++ + + DLK+ + ++ +++
Sbjct: 121 GVKRGGVINILHRSLIIRCSPHHIPKSLEVDLIDVAIGHSLHVSDLKLPSTINVVMKEED 180
Query: 242 PVCK--IA--GGRASDQKKS 257
PV +A GG + D +++
Sbjct: 181 PVIATVVASGGGISEDAEEA 200
>TIGR_CMR|CBU_1840 [details] [associations]
symbol:CBU_1840 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:227377 "Coxiella burnetii RSA 493" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897
OMA:ANVHAPR ProtClustDB:PRK05618 Gene3D:2.170.120.20
Gene3D:2.40.240.10 InterPro:IPR020056 InterPro:IPR020057
SUPFAM:SSF50715 TIGRFAMs:TIGR00731 RefSeq:NP_820819.1
ProteinModelPortal:Q83AP1 PRIDE:Q83AP1 GeneID:1209752
KEGG:cbu:CBU_1840 PATRIC:17932411
BioCyc:CBUR227377:GJ7S-1814-MONOMER Uniprot:Q83AP1
Length = 244
Score = 148 (57.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/128 (32%), Positives = 68/128 (53%)
Query: 121 LEVRSEFGS------GDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVF 174
LE S F S GD +K +V+ + + H +++ F R L ++VPL F
Sbjct: 56 LESESTFSSILTLKVGD--KKQKVILKALQRHHTKPKIVHIDFQRIKASEKLIMNVPLHF 113
Query: 175 RGDDVSPGLRKGGYLNTIKRTVKFLC-PADIVPPYIDVDLSELDVEQKILAGDLKVHPAL 233
G+D PG+ GG ++ ++ V+ C PAD+ P YI+VDLS L +++ + +LK+ +
Sbjct: 114 LGEDDCPGVEAGGVVSHLQSEVEIRCLPADL-PEYIEVDLSHLQLDESVHLSNLKLPAGV 172
Query: 234 KLLRSKDE 241
L + DE
Sbjct: 173 GLTSAVDE 180
>TIGR_CMR|NSE_0306 [details] [associations]
symbol:NSE_0306 "ribosomal 5S rRNA E-loop binding protein
Ctc/L25/TL5" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000315 "organellar large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0006950 "response to
stress" evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0008097 eggNOG:COG1825 HOGENOM:HOG000214907 KO:K02897
Gene3D:2.170.120.20 Gene3D:2.40.240.10 InterPro:IPR020056
InterPro:IPR020057 SUPFAM:SSF50715 TIGRFAMs:TIGR00731
RefSeq:YP_506196.1 ProteinModelPortal:Q2GEA0 STRING:Q2GEA0
GeneID:3932101 KEGG:nse:NSE_0306 PATRIC:22680703 OMA:YGKEREN
ProtClustDB:CLSK2527976 BioCyc:NSEN222891:GHFU-332-MONOMER
Uniprot:Q2GEA0
Length = 194
Score = 125 (49.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 38/114 (33%), Positives = 52/114 (45%)
Query: 137 RVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTV 196
+V+P+ LH + L++ F+ A A K VPL F S +R G LN +KRTV
Sbjct: 71 KVVPKAYELHPVSSVVLHLDFVFAGEHAS-KFQVPLNFVNSGKSEAIRLGAMLNIVKRTV 129
Query: 197 KFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHP--ALKLLRSKDEPVCKIAG 248
C A +P I VD+ V I DL V P + L R + V + G
Sbjct: 130 LVRCTAANLPKSIPVDIENAKVGDSIKFSDL-VFPDGVVPLARDANSVVATVVG 182
Score = 50 (22.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQE 84
+I IPR S G + R++G VP++++ +E
Sbjct: 4 SIECIPRTSFGRNSANVLRRSGFVPAVIYGKE 35
>TIGR_CMR|GSU_0662 [details] [associations]
symbol:GSU_0662 "ribosoma protein L25" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006950 "response to stress" evidence=ISS] [GO:0008097 "5S rRNA
binding" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] HAMAP:MF_01334 InterPro:IPR001021 InterPro:IPR011035
InterPro:IPR020055 Pfam:PF01386 ProDom:PD012503 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
GO:GO:0008097 eggNOG:COG1825 KO:K02897 OMA:ANVHAPR
ProtClustDB:PRK05618 Gene3D:2.170.120.20 Gene3D:2.40.240.10
InterPro:IPR020056 InterPro:IPR020057 SUPFAM:SSF50715
TIGRFAMs:TIGR00731 HOGENOM:HOG000214906 RefSeq:NP_951719.1
ProteinModelPortal:Q74FE7 DNASU:2685482 GeneID:2685482
KEGG:gsu:GSU0662 PATRIC:22024083 BioCyc:GSUL243231:GH27-681-MONOMER
Uniprot:Q74FE7
Length = 194
Score = 115 (45.5 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 28/102 (27%), Positives = 54/102 (52%)
Query: 153 LNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVD 212
L+V F R + +K+ VPLV G + G+++GG L+ + ++ C +P I+VD
Sbjct: 91 LHVDFHRISLDEKVKVHVPLVMVG--TAAGVKEGGMLDVVTYSLDVECLPTAIPEAINVD 148
Query: 213 LSELDVEQKILAGDLKVHPALKLLRSKDEPVCKIAGGRASDQ 254
++ L + I +L + +K+L + P+ I G +A ++
Sbjct: 149 VTNLAIGHSIHVSELVLPAGIKVLNDPETPIVSIHG-KAKEE 189
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.139 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 258 258 0.00087 114 3 11 22 0.47 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 563 (60 KB)
Total size of DFA: 156 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.09u 0.09s 22.18t Elapsed: 00:00:01
Total cpu time: 22.09u 0.09s 22.18t Elapsed: 00:00:01
Start: Thu May 9 15:10:13 2013 End: Thu May 9 15:10:14 2013