BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025088
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9AAV8|RL25_CAUCR 50S ribosomal protein L25 OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rplY PE=3 SV=1
Length = 197
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 21/204 (10%)
Query: 52 ETILAIP-RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGH 108
E IL + R GT + R+AG+VP +++ GG K I+V+ N+ RK
Sbjct: 3 EIILNVEVRDGAGTGNARATRRAGKVPGVLY-------GGGKAPVNIAVKANEFRK---- 51
Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
S + +L V ++G EK V+ + V H TD P++ R L+KI
Sbjct: 52 ---SLYTGKLLGHLVTLQYGE----EKQSVIAKAVQFHPVTDEPVHFDLYRVDEHQLIKI 104
Query: 169 DVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLK 228
+VP+ F+ + S GL+KGG L I+ TV+ CPAD +P + +DL+ D+ I ++K
Sbjct: 105 EVPVHFKNHETSVGLKKGGTLEVIRHTVELACPADKIPEELVIDLAGHDIGDVIRISEVK 164
Query: 229 VHPALKLLRSKDEPVCKIAGGRAS 252
+ +K +D + + A+
Sbjct: 165 LPEGVKPAMDRDFVIANVKASSAA 188
>sp|B8GZU9|RL25_CAUCN 50S ribosomal protein L25 OS=Caulobacter crescentus (strain NA1000
/ CB15N) GN=rplY PE=3 SV=1
Length = 197
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 21/204 (10%)
Query: 52 ETILAIP-RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGH 108
E IL + R GT + R+AG+VP +++ GG K I+V+ N+ RK
Sbjct: 3 EIILNVEVRDGAGTGNARATRRAGKVPGVLY-------GGGKAPVNIAVKANEFRK---- 51
Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
S + +L V ++G EK V+ + V H TD P++ R L+KI
Sbjct: 52 ---SLYTGKLLGHLVTLQYGE----EKQSVIAKAVQFHPVTDEPVHFDLYRVDEHQLIKI 104
Query: 169 DVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLK 228
+VP+ F+ + S GL+KGG L I+ TV+ CPAD +P + +DL+ D+ I ++K
Sbjct: 105 EVPVHFKNHETSVGLKKGGTLEVIRHTVELACPADKIPEELVIDLAGHDIGDVIRISEVK 164
Query: 229 VHPALKLLRSKDEPVCKIAGGRAS 252
+ +K +D + + A+
Sbjct: 165 LPEGVKPAMDRDFVIANVKASSAA 188
>sp|B2IG64|RL25_BEII9 50S ribosomal protein L25 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplY PE=3
SV=1
Length = 221
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 20/173 (11%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLV--GHL 109
+T+ A R G + R+ GR+P +++ D I++ ++ KL+ GH
Sbjct: 5 KTLAATVRGGTGKGAARSIRREGRIPGVIYGGGDAPEP-----ITLDYRELNKLIYAGH- 58
Query: 110 GRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKID 169
F++ +FD+EV K RV+PR L PL+V FLR P A LK+
Sbjct: 59 ----FLTTIFDIEVEGA--------KQRVVPRDYQLDPVKGQPLHVDFLRLKPGATLKVS 106
Query: 170 VPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 222
VP+ F D+ PGL+KGG LN ++ ++ PAD +P + DL L++ + +
Sbjct: 107 VPIHFINADICPGLKKGGTLNIVRHAIELKVPADAMPDVLTADLHALEIAESM 159
>sp|Q2G6G9|RL25_NOVAD 50S ribosomal protein L25 OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=rplY PE=3 SV=1
Length = 204
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 16/164 (9%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG 130
R+ GR P++++ GGN+ +++ + + LV LG F + + +L V +
Sbjct: 24 RREGRTPAVIY-------GGNEEPVAIHLEE-KALVKALGTGHFFNSVVELTVGGQ---- 71
Query: 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLN 190
VR LP+ V H TD P + FLR ++++ ++VP++F ++ SPGL+KGG LN
Sbjct: 72 ----TVRTLPKDVAFHPVTDRPEHADFLRVSKDSVVHVNVPVIFANEEKSPGLKKGGVLN 127
Query: 191 TIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK 234
++ ++ +C D +P I +D++ +V I +K+ +K
Sbjct: 128 IVRHELELVCAPDAIPDDIVIDVAGYEVGDSIHISAVKLPAGVK 171
>sp|Q1GSP2|RL25_SPHAL 50S ribosomal protein L25 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rplY PE=3 SV=1
Length = 212
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 16/170 (9%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
T+ A R G S + R+ GRVP++V+ GG + + + + + L+ L
Sbjct: 6 TLTAETRERGGKGASRELRRNGRVPAVVY-------GGKEEPLMIHVEE-KLLMKQLMTG 57
Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
F++ + +EV + ++R LP+ V H D P++ FLR +A +++ VP+
Sbjct: 58 HFMNSVVMIEVGGK--------QIRTLPKDVAFHPVKDRPIHADFLRIAKDATVQVAVPV 109
Query: 173 VFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 222
VF+ ++ SPGL++GG LN ++ ++ +C AD +P I +D++ D+ I
Sbjct: 110 VFQNEEKSPGLKRGGVLNIVRHELELVCDADNIPDEIAIDVTGFDIGDSI 159
>sp|A5CF34|RL25_ORITB 50S ribosomal protein L25 OS=Orientia tsutsugamushi (strain
Boryong) GN=rplY PE=3 SV=1
Length = 207
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
T++ R+ GT + R+ G+VP ++++ K + + + K V L R
Sbjct: 6 TLVGQLRSDFGTSSARALRRQGKVPGVIYK---------KGITPIHVCTLEKEVAKLYRK 56
Query: 113 -FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPE-ALLKIDV 170
FF S + L+V + + +VLP+ V LH T+ ++ F+ ++ K+ V
Sbjct: 57 PFFSSTVIQLQVDDQ--------RFKVLPKAVQLHPVTEFMNHIDFILVEQNGSMQKVKV 108
Query: 171 PLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVH 230
P+ F G + S G+++GGYLN +KR V LCP D +P I D++ + V I L++
Sbjct: 109 PISFEGKEKSLGIKRGGYLNIVKRYVDLLCPVDKIPQCIKCDIANVSVGASIKISRLELP 168
Query: 231 PALKLLRSKDEPVCKIAGGRASDQKKSK 258
L++S + V G++S Q K +
Sbjct: 169 EGCNLVKSTTDYVIASVIGKSSKQDKEE 196
>sp|B0T899|RL25_CAUSK 50S ribosomal protein L25 OS=Caulobacter sp. (strain K31) GN=rplY
PE=3 SV=1
Length = 199
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 21/204 (10%)
Query: 52 ETILAIP-RASPGTRVSVKERKAGRVPSIVFEQEDGQHGG--NKRLISVQTNQIRKLVGH 108
E IL + R GT S + R+ G+VP +++ GG I+V+ N+ RK + H
Sbjct: 3 EIILNVEIRDRAGTGGSRETRRQGKVPGVLY-------GGPLAPVNIAVKGNEFRKAL-H 54
Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
G+ + L L+ GD EK V+ + V H TD PL+ R L+KI
Sbjct: 55 TGK--LLGHLVTLQ------HGD--EKQSVIAKAVQFHPVTDEPLHFDLYRVDEHQLIKI 104
Query: 169 DVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLK 228
++P+ F+ D+S GL+KGG L I+ TV+ CPAD +P + +DL+ D+ I ++K
Sbjct: 105 EIPVHFKNHDISVGLKKGGTLEIIRHTVELACPADKIPEELVIDLASHDIGDTIRISEIK 164
Query: 229 VHPALKLLRSKDEPVCKIAGGRAS 252
+ ++ +D + + AS
Sbjct: 165 LPEGVRPAMERDFVIANLKASAAS 188
>sp|B8EK41|RL25_METSB 50S ribosomal protein L25 OS=Methylocella silvestris (strain BL2 /
DSM 15510 / NCIMB 13906) GN=rplY PE=3 SV=1
Length = 227
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 22/174 (12%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGN-KRLISVQTNQIRKLV--GH 108
+T+ A R G + R+ GR+P +++ GG+ I++ ++ KL+ GH
Sbjct: 5 KTLAAAARHGTGKGAARSVRREGRIPGVIY------GGGDPAEPITLDYRELNKLIYAGH 58
Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
F++ LF+++V K RV+PR L D PL+V FLR P A LK+
Sbjct: 59 -----FLTTLFEIDVAGT--------KQRVIPRDYQLDPIKDLPLHVDFLRLKPGASLKV 105
Query: 169 DVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 222
+VP+ F + PG++KGG +N ++ +++ PAD +P I DL EL++ +
Sbjct: 106 EVPVHFLNQETCPGVKKGGSVNIVRHSIELRVPADDIPEAITADLGELEINDSL 159
>sp|A5FZ47|RL25_ACICJ 50S ribosomal protein L25 OS=Acidiphilium cryptum (strain JF-5)
GN=rplY PE=3 SV=1
Length = 217
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGR 111
ETI A RA G V+ R+AG+VP++++ G K+ ++ R ++ + R
Sbjct: 5 ETIAAEDRARAGKGVARATRRAGKVPAVIY--------GAKQEPTLIALDPRIVLREMKR 56
Query: 112 SFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVP 171
+ SRL+++E S K R L R + LH TD P +V F R +++ V
Sbjct: 57 GGWRSRLYEIETASG--------KARALMRDIQLHPVTDQPEHVDFQRLAAGEPVRVAVN 108
Query: 172 LVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLK 228
+ F + +S G+++GG LN ++ V+ LC D +P + + DL LD+ I DLK
Sbjct: 109 VNFLNELISVGMKRGGVLNVVRHAVEVLCDPDHIPDHFEADLGPLDINDNIRWSDLK 165
>sp|A7HVD8|RL25_PARL1 50S ribosomal protein L25 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rplY PE=3 SV=1
Length = 216
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 23/164 (14%)
Query: 63 GTRVSVKE-RKAGRVPSIVFEQEDGQHGGNKR---LISVQTNQIRKLVGHLGRSFFVSRL 118
G++ +V+ R+AGRVP++++ G+K+ LI+V + L F+S +
Sbjct: 15 GSKGAVRSLRRAGRVPAVIY--------GDKQSPELIAVSYKDVSAL---YQTGTFMSHV 63
Query: 119 FDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDD 178
D+E+ G E RV+PR V D ++V FLR A + +DVP+ F +
Sbjct: 64 LDVEI------GGKTE--RVIPRDVQFEPVRDFIIHVDFLRLGKNATVTVDVPVHFHNHE 115
Query: 179 VSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 222
SPG++ GG LN ++ V+ +CPAD +P +D+DL+ ++ I
Sbjct: 116 ASPGIKAGGVLNIVRHEVELVCPADAIPEQLDIDLTGFEMGSSI 159
>sp|B3CTF9|RL25_ORITI 50S ribosomal protein L25 OS=Orientia tsutsugamushi (strain Ikeda)
GN=rplY PE=3 SV=1
Length = 207
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
T++ R+ GT + R+ G+VP ++++ K + + + K V L R
Sbjct: 6 TLVGQLRSDFGTSSARALRRQGKVPGVIYK---------KGITPIHVCTLEKEVAKLYRK 56
Query: 113 -FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEA-LLKIDV 170
FF S + L+V + + +VLP+ V LH T+ ++ F+ + K+ V
Sbjct: 57 PFFSSTVIQLQVDDQ--------RFKVLPKAVQLHPVTEFINHIDFILVEQNGGIQKVKV 108
Query: 171 PLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVH 230
P+ F G D S G+++GGYLN +KR V LCP D +P I D++ + V I L++
Sbjct: 109 PISFEGKDKSLGIKRGGYLNIVKRYVDLLCPVDKIPQCIKCDIANVPVGASIKVSRLELP 168
Query: 231 PALKLLRSKDEPVCKIAGGRASDQKKSK 258
L++ + V G++S Q K +
Sbjct: 169 EGCNLVKRTTDYVIASVIGKSSKQDKEE 196
>sp|Q2NAN1|RL25_ERYLH 50S ribosomal protein L25 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rplY PE=3 SV=1
Length = 229
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
T+ A R G S R+ GRVP++++ GG + + + + L+ L
Sbjct: 6 TLPAEARERAGKGASRALRREGRVPAVIY-------GGKEEPTMIHVEE-KLLIKQLMTG 57
Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
F++ + ++E+ + VR LP+ V LH +D P + F R +++ VP+
Sbjct: 58 HFMNSIVEIEIGGK--------TVRTLPKDVALHPVSDRPEHADFFRLAKGGKIEVSVPV 109
Query: 173 VFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 222
VF ++ SPGL+KGG LN ++ ++ +C D +P I++D++ +V I
Sbjct: 110 VFMNEEASPGLKKGGVLNVVRHELELVCENDKIPGEIEIDVTGKEVGDSI 159
>sp|B8IFN5|RL25_METNO 50S ribosomal protein L25 OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=rplY PE=3 SV=1
Length = 211
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A+ R G + R+ GRVP++++ G + + IS+ NQ L+ G F+
Sbjct: 9 AVARDRVGKGAARAVRRQGRVPAVIYGG-----GQSPQSISLDANQTHHLIYGGG---FL 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
+ +F++EV K+R +PR L D PL+V FLR + ++VP+ F
Sbjct: 61 TTVFEIEVGGR--------KIRAIPRDYQLDPVKDLPLHVDFLRVTAGQTVAVEVPVHFV 112
Query: 176 GDDVSPGLR-KGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK 234
D +PGL+ K G LN + TV D +P IDVDL+ D+ I DL +
Sbjct: 113 NQDAAPGLKQKSGMLNVVHHTVALEVSPDAIPDAIDVDLTGKDIGDTIHVSDLALPAGAS 172
Query: 235 LLRSKDEPVCKI 246
L E V +
Sbjct: 173 LALDPSETVATL 184
>sp|Q98HV7|RL25_RHILO 50S ribosomal protein L25 OS=Rhizobium loti (strain MAFF303099)
GN=rplY PE=3 SV=1
Length = 213
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 134 EKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIK 193
+K++VLP+ L D P++V FLR + + +DVP+ F +D SPG+++GG LN ++
Sbjct: 72 KKIQVLPKDFQLDPVKDFPVHVDFLRIGKDTEVNVDVPVHFINEDKSPGIKRGGVLNIVR 131
Query: 194 RTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK-LLRSKDEPVCKIAGGRA 251
V+F CPA+ +P +I +DL+ ++ I +++ +K ++ +D + IAG A
Sbjct: 132 HEVEFHCPANAIPEFITIDLTGTNIGDSIHISAVQLPAGVKPVISDRDFTIATIAGSSA 190
>sp|B4R8Q7|RL25_PHEZH 50S ribosomal protein L25 OS=Phenylobacterium zucineum (strain
HLK1) GN=rplY PE=3 SV=1
Length = 208
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGHLGRSFFVS 116
R GT + R++G VP +++ GG+K I+V+ N+ RK + +
Sbjct: 11 RERTGTGGARDTRRSGMVPGVLY-------GGDKDPVAIAVRANEFRK-------ALYTG 56
Query: 117 RLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRG 176
+L V ++G+ E V+ + V +H TD P + R +KI+VP+ F
Sbjct: 57 KLLGHLVTLKYGN----ETQPVIAKAVDMHPVTDEPQHFDLYRVDEHQQIKIEVPVHFTN 112
Query: 177 DDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV 229
D SPGL++GG LN T+ CPAD +P I DL+ L++ I DLK+
Sbjct: 113 QDDSPGLKRGGTLNVALHTLTVSCPADSIPEEIVFDLTGLEIGATIRVADLKL 165
>sp|Q2RMV5|RL25_RHORT 50S ribosomal protein L25 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplY PE=3 SV=1
Length = 210
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 20/198 (10%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGHLG 110
T+ A R G + R+ G+VP++++ GG + L+S+ I +
Sbjct: 6 TLSAKGRDRAGKGAARATRREGQVPAVIY-------GGRQDPVLLSLAPRLIHT---EMR 55
Query: 111 RSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDV 170
++ F SRLFDL V E RV+ + V H TD P++V FLR + + + +
Sbjct: 56 KAGFSSRLFDLTVEGG-------ETHRVMVQDVQFHPVTDMPIHVDFLRIGKDTEVTVAI 108
Query: 171 PLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVH 230
P+ F + SPGL++GG LN ++ ++ D +P + +VDL+ +V I G +K+
Sbjct: 109 PVHFINETASPGLKRGGVLNVVRHEIEVHGRPDALPDFFEVDLTGAEVGDSIHVGVVKIP 168
Query: 231 PALK-LLRSKDEPVCKIA 247
++ ++ +D +C IA
Sbjct: 169 EGVRPVIAERDFTICTIA 186
>sp|Q4UMK5|RL25_RICFE 50S ribosomal protein L25 OS=Rickettsia felis (strain ATCC VR-1525
/ URRWXCal2) GN=rplY PE=3 SV=1
Length = 203
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 17/197 (8%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT S R+ GRVP+I++ G K +S+ + +++ + + F+
Sbjct: 9 AKSRTEFGTGASRALRREGRVPAIIY-------GAGKTPVSISLEE-KEITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
S+L +L + + K +VLP+ V LH TD +V F+ E K++VP+V+
Sbjct: 61 SQLINLTIDKK--------KYKVLPKAVELHPVTDIVRHVDFVFLE-EKTQKMEVPVVYE 111
Query: 176 GDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKL 235
G + + G+++GGY N +KR V LC + +P + +D++ + + + + +++
Sbjct: 112 GKERALGVKRGGYFNIVKRRVTLLCDVNNIPRNVTIDVTNMPIATSLKSSKIELPKGCSF 171
Query: 236 LRSKDEPVCKIAGGRAS 252
K+ + I G R +
Sbjct: 172 TTKKEFVLATIIGRRGA 188
>sp|A8GP85|RL25_RICAH 50S ribosomal protein L25 OS=Rickettsia akari (strain Hartford)
GN=rplY PE=3 SV=1
Length = 199
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 100/199 (50%), Gaps = 21/199 (10%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A PR GT + R+ GRVP+I++ G K +S+ + + + + + F+
Sbjct: 9 AKPRTEFGTGAARALRREGRVPAIIY-------GAGKTPVSISLEE-KAITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNV--TFLRAPPEALLKIDVPLV 173
S+L ++ + + + +VLP+ V LH TD +V FL A + K++VP+V
Sbjct: 61 SQLINVTIDQK--------QYKVLPKAVELHPVTDMVRHVDFVFLEAKTQ---KMEVPIV 109
Query: 174 FRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPAL 233
+ G + + G+++GGY N +KR V LC + +P + +D++ + + + + +++
Sbjct: 110 YEGKERALGVKRGGYFNIVKRRVTLLCDVNNIPRNVTIDVTNMPIATSLKSSKIELPKGC 169
Query: 234 KLLRSKDEPVCKIAGGRAS 252
+ K+ + I G R +
Sbjct: 170 SFVTKKEFVLATIIGRRGA 188
>sp|Q4FPH0|RL25_PELUB 50S ribosomal protein L25 OS=Pelagibacter ubique (strain HTCC1062)
GN=rplY PE=3 SV=1
Length = 228
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 16/163 (9%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG 130
R AG +P I++ D + ++V ++ L+ + F+S + L + +
Sbjct: 21 RSAGNIPGIIYGGPD-----QNQKVTVLKKTLKSLID---KGSFLSNIITLNLDGK---- 68
Query: 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLN 190
VLPR++ + +D P ++ FLR P ++I+VP+VF + SPGL++GG LN
Sbjct: 69 ----PQNVLPREITYNVISDEPTHIDFLRVVPGVKIRIEVPVVFINHETSPGLKRGGVLN 124
Query: 191 TIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPAL 233
++R ++ CP++ +P I +DL +D+ + +K+ +
Sbjct: 125 IVRRKIELKCPSEKIPSAITIDLDGVDIGESFKISSVKLEEGV 167
>sp|Q3SPM6|RL25_NITWN 50S ribosomal protein L25 OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=rplY PE=3 SV=1
Length = 228
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 22/168 (13%)
Query: 76 VPSIVFEQEDGQHGGNKRL---ISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDL 132
VP++++ GNK+ ISV+ ++R+ + GR F++ +FD+ + +
Sbjct: 29 VPAVIY--------GNKQPPQPISVEEPELRQRI-LAGR--FLTTIFDINLDGK------ 71
Query: 133 IEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTI 192
K RV+PR HL D P++V F+R A +++ VPL DV+PG+++GG +N +
Sbjct: 72 --KHRVIPRDFHLDPVKDFPIHVDFMRLGEGATIRVSVPLRLLKADVAPGVKRGGTVNLV 129
Query: 193 KRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLLRSKD 240
+ C A+ +P +I+ D+ L++ + DL++ P +K L +D
Sbjct: 130 THAIDVECAAESIPQFIEADVGALEISHSLHLSDLQLPPGVKPLARED 177
>sp|Q219F9|RL25_RHOPB 50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplY PE=3 SV=1
Length = 240
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 88 HGGNK--RLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHL 145
+G NK ISV ++R + GR F++ +FD+E+ + K RV+PR HL
Sbjct: 34 YGDNKPPVTISVDDTELRARI-LAGR--FLTTIFDVELDGQ--------KHRVIPRDFHL 82
Query: 146 HSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIV 205
D P++V FLR AL+++ VPL + + +PG+++GG +N + TV+ A+ +
Sbjct: 83 DPVRDFPIHVDFLRLGEGALIRVSVPLHLKNAEGAPGVKRGGTVNIVTHTVELEAEAESI 142
Query: 206 PPYIDVDLSELDVEQKILAGDLKVHPALKLLRSKDEPVCKI 246
P +I+ D+S+LD+ + D+ + +K L +D + I
Sbjct: 143 PQFIEADVSQLDIGSSLHLSDVVLPKGVKTLSREDLTLVTI 183
>sp|Q89DJ8|RL25_BRAJA 50S ribosomal protein L25 OS=Bradyrhizobium japonicum (strain USDA
110) GN=rplY PE=3 SV=1
Length = 238
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 24/185 (12%)
Query: 76 VPSIVFEQEDGQHGGNKR---LISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDL 132
VP +++ GN + IS++ ++R+ + GR F++ L D+++ +
Sbjct: 30 VPGVIY--------GNNQPPVTISIEDRELRQRI-LAGR--FLTTLVDIDLEGK------ 72
Query: 133 IEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTI 192
K RV+PR HL D P++V F+R A ++I VPL + SPG+++GG +N +
Sbjct: 73 --KHRVIPRDYHLDPVKDFPIHVDFMRLGEGATIRISVPLHVVKSEASPGVKRGGTVNIV 130
Query: 193 KRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLLRSKDEPVCKIA--GGR 250
++ C + +P YI+ D+ L++ + D+K+ +K L +D + I G
Sbjct: 131 AHAIELECGVESIPQYIEADVGSLEIGHSLHLSDVKLPAGVKALTREDATLVTIVPPSGY 190
Query: 251 ASDQK 255
A +QK
Sbjct: 191 AEEQK 195
>sp|Q2VZ23|RL25_MAGSA 50S ribosomal protein L25 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplY PE=3 SV=1
Length = 202
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 15/177 (8%)
Query: 53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
I A R G + R+AG+VP +++ G K I +Q + R + + ++
Sbjct: 6 AIAAELRDGSGKGAARATRRAGKVPGVIY-------GDKKAAICIQMDP-RVVWAQISKT 57
Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
F ++LF++++ + K L R V +H TD P++V F+R + + + VP+
Sbjct: 58 GFFTQLFNVDLGKD-------GKHLCLARDVQMHPVTDQPIHVDFMRVSADHAIHVKVPV 110
Query: 173 VFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV 229
F + SPG++KGG LN ++ C + +P I +DL L++ I DLK+
Sbjct: 111 HFTNELKSPGIKKGGVLNVELHEIEITCSPNDIPHEILIDLDGLEIGASIHLSDLKL 167
>sp|Q2ISF7|RL25_RHOP2 50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain
HaA2) GN=rplY PE=3 SV=1
Length = 240
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 11/153 (7%)
Query: 95 ISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLN 154
ISV+ +R + GR F++ +FD+ + + K RV+PR HL D P++
Sbjct: 43 ISVEDKDLRLRI-QAGR--FLTTIFDVVLDGQ--------KHRVIPRDYHLDPVKDFPVH 91
Query: 155 VTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLS 214
V FLR A ++I VPL +G + +PG+++GG N + TV PAD +P +I+ D+S
Sbjct: 92 VDFLRLGEGATIRISVPLHLKGLESAPGVKRGGTFNIVTHTVDLEAPADAIPQFIEADVS 151
Query: 215 ELDVEQKILAGDLKVHPALKLLRSKDEPVCKIA 247
LD+ + D+ + +K + +D + I
Sbjct: 152 TLDIGVSLHLSDIALPKGVKSVSREDVTLVTIV 184
>sp|Q68WD3|RL25_RICTY 50S ribosomal protein L25 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rplY PE=3 SV=1
Length = 203
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 21/195 (10%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT + R+ GRVP+I++ G K IS+ + +++ + R F+
Sbjct: 9 AKSRTEFGTGAARALRREGRVPAIIY-------GAGKIPISISLEE-KEITKYYRRPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNV--TFLRAPPEALLKIDVPLV 173
S+L +L + + + +VLP+ V LH TD +V FL A + K++VP+V
Sbjct: 61 SQLINLTIDKK--------QYKVLPKAVELHPVTDIVRHVDFVFLEAKTQ---KMEVPVV 109
Query: 174 FRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPAL 233
+ G + + G+++GGY N IKR V LC + +P + +D++ + + + + ++K+
Sbjct: 110 YEGKERALGVKRGGYFNIIKRRVILLCDINNIPRNVTIDVTNMPIGTSLKSSEVKLPIGC 169
Query: 234 KLLRSKDEPVCKIAG 248
+ K+ + I G
Sbjct: 170 SFVTKKEFVLATIIG 184
>sp|Q9ZCV3|RL25_RICPR 50S ribosomal protein L25 OS=Rickettsia prowazekii (strain Madrid
E) GN=rplY PE=3 SV=1
Length = 203
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT + R+ GRVP+I++ G K IS+ + +++ + + F+
Sbjct: 9 AKSRTEFGTGAARALRREGRVPAIIY-------GAGKTPISISLKE-KEITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNV--TFLRAPPEALLKIDVPLV 173
S+L +L + + + +VLP+ V LH TD +V FL A + K++VP+V
Sbjct: 61 SQLINLTIDKK--------QYKVLPKAVELHPVTDIVRHVDFVFLEAKTQ---KMEVPIV 109
Query: 174 FRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPAL 233
+ G + + G+++GGY N IKR V LC + +P + +D++ + + + + +++
Sbjct: 110 YEGKERALGVKRGGYFNIIKRRVILLCDVNNIPRNVTIDVTNMPIGTSLKSSQVELPKGC 169
Query: 234 KLLRSKDEPVCKIAGGRA 251
+ K+ + I G R
Sbjct: 170 SFITKKEFVLATIIGRRG 187
>sp|Q1RI71|RL25_RICBR 50S ribosomal protein L25 OS=Rickettsia bellii (strain RML369-C)
GN=rplY PE=3 SV=1
Length = 202
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 97/197 (49%), Gaps = 17/197 (8%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT + R+ GRVP+I++ G K +S+ + +++ + + F+
Sbjct: 9 AKSRNEFGTGAARALRREGRVPAIIY-------GAKKTPVSISLEE-KEITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
S+L +L + + +VLP+ V LH TD +V F+ + K++VP+V+
Sbjct: 61 SQLINLTIEGT--------QYKVLPKAVELHPVTDIVRHVDFVFLE-DKTQKMEVPVVYE 111
Query: 176 GDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKL 235
G + + G+++GGY N +KR V LC + +P + +D++ + + + + +K+
Sbjct: 112 GKERALGVKRGGYFNIVKRRVTLLCDVNNIPRNVTIDVTNMPIATSLKSSKVKLPEGCSF 171
Query: 236 LRSKDEPVCKIAGGRAS 252
K+ + I G R +
Sbjct: 172 TTKKEFVLATIIGRRGA 188
>sp|A8GVL5|RL25_RICB8 50S ribosomal protein L25 OS=Rickettsia bellii (strain OSU 85-389)
GN=rplY PE=3 SV=1
Length = 202
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 97/197 (49%), Gaps = 17/197 (8%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT + R+ GRVP+I++ G K +S+ + +++ + + F+
Sbjct: 9 AKSRNEFGTGAARALRREGRVPAIIY-------GAKKTPVSISLEE-KEITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
S+L +L + + +VLP+ V LH TD +V F+ + K++VP+V+
Sbjct: 61 SQLINLTIEGT--------QYKVLPKAVELHPVTDIVRHVDFVFLE-DKTQKMEVPVVYE 111
Query: 176 GDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKL 235
G + + G+++GGY N +KR V LC + +P + +D++ + + + + +K+
Sbjct: 112 GKERALGVKRGGYFNIVKRRVTLLCDVNNIPRNVTIDVTNMPIATSLKSSKVKLPEGCSF 171
Query: 236 LRSKDEPVCKIAGGRAS 252
K+ + I G R +
Sbjct: 172 TTKKEFVLATIIGRRGA 188
>sp|A8HS67|RL25_AZOC5 50S ribosomal protein L25 OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=rplY PE=3 SV=1
Length = 207
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 20/165 (12%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLV--GHLGRSF 113
A+ RA G + ER+AGRVP++++ ++ IS+ +I +++ GH
Sbjct: 9 AVARARGGKGAARAERRAGRVPAVIYGEKQ-----EPVTISLGHKEITRIIYAGH----- 58
Query: 114 FVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLV 173
F++ LF+++V K RV+PR L D PL+V FLR A + ++VP+
Sbjct: 59 FLTTLFEIDVDGV--------KHRVIPRDYQLDPVKDLPLHVDFLRVSQGASVTVEVPVH 110
Query: 174 FRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDV 218
F D +PGL+ GG LN + V CPA+ +P ++ DL+ L++
Sbjct: 111 FENQDKAPGLKSGGTLNVVAHAVALECPAEAIPDHVVADLTGLEI 155
>sp|B3Q7X4|RL25_RHOPT 50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rplY PE=3 SV=1
Length = 230
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 11/153 (7%)
Query: 95 ISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLN 154
ISV+ ++R + GR F++ +FD+ + + K RV+PR HL D P++
Sbjct: 43 ISVEEKELRLRI-LAGR--FLTTVFDVVLDGK--------KHRVIPRDYHLDPVRDFPIH 91
Query: 155 VTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLS 214
V FLR A +++ VPL +G +V+PG+++GG N + TV+ PA+ +P +I+ D+S
Sbjct: 92 VDFLRLGAGATIRVSVPLHLKGLEVAPGVKRGGTFNIVTHTVELEAPAENIPQFIEADVS 151
Query: 215 ELDVEQKILAGDLKVHPALKLLRSKDEPVCKIA 247
LD+ + D+ + +K + D + I
Sbjct: 152 TLDIGVSLHLSDIALPTGVKSVSRDDVTLVTIV 184
>sp|Q6N1P8|RL25_RHOPA 50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain
ATCC BAA-98 / CGA009) GN=rplY PE=1 SV=3
Length = 230
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 11/153 (7%)
Query: 95 ISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLN 154
ISV+ ++R + GR F++ +FD+ + + K RV+PR HL D P++
Sbjct: 43 ISVEEKELRLRI-LAGR--FLTTVFDVVLDGK--------KHRVIPRDYHLDPVRDFPIH 91
Query: 155 VTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLS 214
V FLR A +++ VPL +G +V+PG+++GG N + TV+ PA+ +P +I+ D+S
Sbjct: 92 VDFLRLGAGATIRVSVPLHLKGLEVAPGVKRGGTFNIVTHTVELEAPAENIPQFIEADVS 151
Query: 215 ELDVEQKILAGDLKVHPALKLLRSKDEPVCKIA 247
LD+ + D+ + +K + D + I
Sbjct: 152 TLDIGVSLHLSDIALPTGVKSVSRDDVTLVTIV 184
>sp|B0UGY1|RL25_METS4 50S ribosomal protein L25 OS=Methylobacterium sp. (strain 4-46)
GN=rplY PE=3 SV=1
Length = 217
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A+ R G + R+ GRVP++++ G + + IS+ NQ L+ G F+
Sbjct: 9 AVARDRVGKGAARAVRRQGRVPAVIYGG-----GQSPQSISLDANQTHHLIYGGG---FL 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
S +F++ V +R +PR L D PL+V FLR ++++VP+ F
Sbjct: 61 STVFEIAVDGR--------TIRAIPRDYQLDPVKDTPLHVDFLRVVSGQTIEVEVPVHFV 112
Query: 176 GDDVSPGLR-KGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK 234
D +PGL+ K G LN + T+ D +P ++VDL+ D+ + DL +
Sbjct: 113 NQDAAPGLKQKSGTLNVVLHTITLAVSPDAIPDAVNVDLTGKDIGDTVHVSDLVLPTGAS 172
Query: 235 LLRSKDEPVCKI 246
L + E V +
Sbjct: 173 LALAPSETVATL 184
>sp|Q1QIV7|RL25_NITHX 50S ribosomal protein L25 OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=rplY PE=3 SV=1
Length = 233
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 88 HGGNK--RLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHL 145
+G N+ + ISV+ ++R+ + GR F++ +FD+ + + K RV+PR HL
Sbjct: 34 YGNNQPPQPISVEEPELRQRI-LAGR--FLTTVFDISLEGK--------KHRVIPRDFHL 82
Query: 146 HSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIV 205
D P++V FLR A +++ +P+ DV+PG+++GG +N + + C AD +
Sbjct: 83 DPVKDFPIHVDFLRLGEGATIRVSIPIRLLKADVAPGVKRGGTVNLVIHAIDVECAADDI 142
Query: 206 PPYIDVDLSELDVEQKILAGDLKVHPALKLLRSKDEPVCKI 246
P +I+ D+ L++ + D+++ P +K L +D + I
Sbjct: 143 PQFIEADVGGLEMSHSLHLSDVELPPGVKPLAREDMTLVTI 183
>sp|B6JIP4|RL25_OLICO 50S ribosomal protein L25 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplY PE=3 SV=1
Length = 240
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 76 VPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEK 135
VP++++ G NK +++ + + L + F++ LF++++ + K
Sbjct: 29 VPAVIY-------GDNKPPVTISLDD-KALRQSIFAGHFLTTLFNIDLDGQ--------K 72
Query: 136 VRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRT 195
RV+PR L D PL+V FLR A +++ VPL +G ++SPG+++GG +N + T
Sbjct: 73 YRVIPRDYALDPVKDFPLHVDFLRLGEGATIRVSVPLHVKGAELSPGVKRGGTVNIVNHT 132
Query: 196 VKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK 234
V+ D +P +I+VD+S+L++ + D+ + +K
Sbjct: 133 VELEAEVDHIPQFIEVDVSKLEINNSVHLNDVALPKGVK 171
>sp|A9HC01|RL25_GLUDA 50S ribosomal protein L25 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplY PE=3 SV=1
Length = 206
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 20/169 (11%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG 130
R+ G+VP++++ G K+ ++ R +V + R + SR++D+ V
Sbjct: 24 RRDGQVPAVIY--------GAKQEPTLVALDPRLVVREMQRGGWRSRVYDVTVDGASSPA 75
Query: 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLN 190
L R++ LH +D P++V F R + ++V +VF G+D SPG+++GG LN
Sbjct: 76 --------LMREIQLHPVSDKPIHVDFQRLAAGERVHVEVRIVFTGEDKSPGIKRGGVLN 127
Query: 191 TIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLK----VHPALKL 235
++ TV+ +P VDLS+LD+ + DL+ V P L++
Sbjct: 128 IVRHTVEVSADPANIPESFTVDLSQLDIHDNVRWDDLQGTGSVTPTLQI 176
>sp|Q5FRT8|RL25_GLUOX 50S ribosomal protein L25 OS=Gluconobacter oxydans (strain 621H)
GN=rplY PE=3 SV=1
Length = 218
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 17/159 (10%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG 130
R+ G VP++++ G K+ S+ R ++ L R + SR+++L
Sbjct: 24 RREGLVPAVIY--------GGKQEPSIIALDPRVIMKELHRGGWSSRVYNLAAEGA---- 71
Query: 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLN 190
E V L R V LH TDAP++V F R + ++V + F G++ SPG+++GG LN
Sbjct: 72 ---EPVAALIRDVQLHPVTDAPIHVDFQRVAAGTKVHVEVSIAFVGEEKSPGIKRGGVLN 128
Query: 191 TIKRTVKFLC-PADIVPPYIDVDLSELDVEQKILAGDLK 228
++ V PA+I P + +LS LD+ + DLK
Sbjct: 129 VVRHYVDVQADPANI-PEHFTAELSGLDIHDNVRWTDLK 166
>sp|A8EY64|RL25_RICCK 50S ribosomal protein L25 OS=Rickettsia canadensis (strain McKiel)
GN=rplY PE=3 SV=1
Length = 204
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 86/163 (52%), Gaps = 17/163 (10%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT + R+ GRVP+I++ G K +S+ + +++ + + F+
Sbjct: 9 AQSRTEFGTGAARALRREGRVPAIIY-------GAGKTPVSISLEE-KEITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
S+L +L + + + +VLP+ V LH TD +V F+ E K++VP+V+
Sbjct: 61 SQLINLTIDKK--------QYKVLPKAVELHPVTDIVRHVDFVFLE-EKKQKMEVPVVYE 111
Query: 176 GDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDV 218
G + + G+++GGY N +KR V LC + +P + +D++ + +
Sbjct: 112 GKERALGVKRGGYFNIVKRRVTLLCDVNNIPRNVTIDVTNMPI 154
>sp|Q131L9|RL25_RHOPS 50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain
BisB5) GN=rplY PE=3 SV=1
Length = 234
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
Query: 95 ISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLN 154
ISV+ ++R + GR F++ +FD+ + + K RV+PR HL D P++
Sbjct: 43 ISVEDKELRLRI-LAGR--FLTTVFDVVLDGK--------KHRVIPRDYHLDPVKDFPIH 91
Query: 155 VTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLS 214
V FLR A +++ VPL +G + +PG+++GG N + TV PA+ +P +I+ D+S
Sbjct: 92 VDFLRLGAGATIRVSVPLHLKGLESAPGVKRGGTFNIVTHTVDLEAPAESIPQFIEADVS 151
Query: 215 ELDVEQKILAGDLKVHPALKLLRSKDEPVCKIA 247
LD+ + D+ + +K + +D + I
Sbjct: 152 TLDIGVSLHLSDIALPNGVKSVSREDVTLVTIV 184
>sp|B1Z970|RL25_METPB 50S ribosomal protein L25 OS=Methylobacterium populi (strain ATCC
BAA-705 / NCIMB 13946 / BJ001) GN=rplY PE=3 SV=1
Length = 228
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 21/181 (11%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNK--RLISVQTNQIRKLVGHL 109
+T+ A+ R G + R+ G++P++++ GGN+ I+V + R L+
Sbjct: 5 KTLEAVARDRVGKGAARAVRRQGQIPAVIY-------GGNQAPEAIAVDLIRTRTLIYAG 57
Query: 110 GRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKID 169
G F + LFD+ V + K R +PR L + PL+V FLR + +D
Sbjct: 58 G---FKTTLFDITVGGK--------KTRAIPRDYQLDPVSGVPLHVDFLRVVSGQTVTVD 106
Query: 170 VPLVFRGDDVSPGLR-KGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLK 228
VP+ F D+ +PG++ KGG LN TV D +P I+VDL+ ++ I A DL+
Sbjct: 107 VPVHFVNDEKAPGIKQKGGTLNVALHTVSLDVAPDQIPDAIEVDLTGREIGDVIHASDLR 166
Query: 229 V 229
+
Sbjct: 167 L 167
>sp|A7IIK6|RL25_XANP2 50S ribosomal protein L25 OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=rplY PE=3 SV=1
Length = 203
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 20/161 (12%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLV--GHLGRSF 113
A+ R G + ER+AGRVP++++ ++ IS+ +I K + GH
Sbjct: 9 AVARPRAGKGAARAERRAGRVPAVIYGEKQ-----EPVTISLNFREINKTIYAGH----- 58
Query: 114 FVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLV 173
F++ LF+++V K RV+PR L D PL+V FLR A + ++VP+
Sbjct: 59 FLTTLFEIDVDGT--------KHRVIPRDYQLDVVKDFPLHVDFLRVSQGATVTVEVPVH 110
Query: 174 FRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLS 214
F + SP L+ GG LN + V+ CPA+ +P ++VDL+
Sbjct: 111 FLNQEASPALKAGGTLNVVAHAVELECPAESIPASVEVDLT 151
>sp|Q6G0F8|RL25_BARQU 50S ribosomal protein L25 OS=Bartonella quintana (strain Toulouse)
GN=rplY PE=3 SV=1
Length = 208
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 56/89 (62%)
Query: 134 EKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIK 193
+K+ VLP+ L D P++V FLR ++++++ +P+ F +D +PGL+KGG LN ++
Sbjct: 71 QKIMVLPKDYQLDPVRDFPIHVDFLRVSAQSVVEVSIPVHFFNEDTAPGLKKGGVLNIVR 130
Query: 194 RTVKFLCPADIVPPYIDVDLSELDVEQKI 222
++ + PA+ +P I++DLS + I
Sbjct: 131 HEIECIAPANAIPEAIEIDLSNYSIGDSI 159
>sp|A5V625|RL25_SPHWW 50S ribosomal protein L25 OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=rplY PE=3 SV=1
Length = 207
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R G S R+ GRVP++++ ++ I V+ + KL+ H G F
Sbjct: 9 AEARERAGKGASRAIRREGRVPAVIYGEKQ-----EPASIHVEEKVLMKLL-HTGHFFNS 62
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
+ D+ + KVR LP+ V H TD PL+V FLR + ++VP+ F+
Sbjct: 63 VVMLDVGGK----------KVRTLPKDVQFHPVTDRPLHVDFLRIGEHTKVNVNVPVHFK 112
Query: 176 GDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 222
+++SPGL++GG LN + + A +P I + L L+V + I
Sbjct: 113 DEELSPGLKRGGVLNVVIHDLGLSVDAAEIPEEIVISLKGLEVGESI 159
>sp|A9IR85|RL25_BART1 50S ribosomal protein L25 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplY PE=3 SV=1
Length = 209
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 56/89 (62%)
Query: 134 EKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIK 193
+K+ VLP+ L D PL+V FLR ++++++++P+ F +D +PGL+KGG LN ++
Sbjct: 71 QKIMVLPKDYQLDPVRDFPLHVDFLRISAKSVVEVNIPVHFLNEDTAPGLKKGGVLNIVR 130
Query: 194 RTVKFLCPADIVPPYIDVDLSELDVEQKI 222
++ PA+ +P I++DLS + I
Sbjct: 131 HEIECTAPANAIPEAIEIDLSSYSIGDSI 159
>sp|A9M6K0|RL25_BRUC2 50S ribosomal protein L25 OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=rplY PE=3 SV=1
Length = 207
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 97/181 (53%), Gaps = 23/181 (12%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKR---LISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEF 127
R+ G++P++++ G+K+ I+V +I + G F + + +EV +
Sbjct: 24 RRNGQIPAVIY--------GDKQEPLAIAVSYKEIFYKIHGGG---FKTTVATIEVDGK- 71
Query: 128 GSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGG 187
K++VLP+ L D P +V FLR ++++ ++VP+ F+ ++ +PG+++GG
Sbjct: 72 -------KIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFKNEEAAPGIKRGG 124
Query: 188 YLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV-HPALKLLRSKDEPVCKI 246
LN ++ V+ + PA+ +P +++DLS L++ + +K+ A ++ +D + I
Sbjct: 125 VLNVVRHDVELIVPANAIPEALEIDLSGLEIGDSVHISAVKLPKGATPAIQDRDFTIATI 184
Query: 247 A 247
A
Sbjct: 185 A 185
>sp|B1LZ78|RL25_METRJ 50S ribosomal protein L25 OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=rplY PE=3 SV=1
Length = 227
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNK--RLISVQTNQIRKLVGHL 109
+T+ A+ R G + R+ G++P++++ GG + + I+V + R L+
Sbjct: 5 KTLEAVARDRVGKGAARAVRRQGQIPAVIY-------GGGQPPQSIAVDLIRTRTLIYAG 57
Query: 110 GRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKID 169
G F + LF++ + KVR +PR L T PL+V FLR + ++
Sbjct: 58 G---FKTTLFEINAGGK--------KVRAIPRDFQLDPVTGVPLHVDFLRVVSGQTVTVE 106
Query: 170 VPLVFRGDDVSPGLRK-GGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLK 228
VP+ F +D +PG++K GG LN + T+ D +P I+VDL+ + I D+K
Sbjct: 107 VPVHFVNEDAAPGIKKLGGTLNIVAHTLSLEVAPDQIPDAIEVDLTGRAIGDVIHVSDIK 166
Query: 229 VHPALKLLRSKDEPVCKI 246
+ PA +PV I
Sbjct: 167 I-PAGTYTGEATDPVANI 183
>sp|Q92H40|RL25_RICCN 50S ribosomal protein L25 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rplY PE=3 SV=1
Length = 203
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 101/197 (51%), Gaps = 17/197 (8%)
Query: 56 AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
A R GT + R+AGRVP+I++ G K +S+ + +++ + + F+
Sbjct: 9 AESRTEFGTGAARALRRAGRVPAIIY-------GAGKTPVSISLEE-KEITKYYRKPAFI 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
S+L +L + + K +VLP+ V LH TD +V F+ E K++VP+V+
Sbjct: 61 SQLINLTIDKK--------KYKVLPKAVELHPVTDIVRHVDFVFLE-EKTQKMEVPVVYE 111
Query: 176 GDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKL 235
G + + G+++GGY N +KR V LC + +P + +D++ + + + + +++
Sbjct: 112 GKERALGVKRGGYFNIVKRRVTLLCDVNNIPRNVTIDVTNMPMATSLKSSKIELPKGCSF 171
Query: 236 LRSKDEPVCKIAGGRAS 252
+ +K+ + I G R +
Sbjct: 172 VTNKEFVLATIIGRRGA 188
>sp|Q2K5U4|RL25_RHIEC 50S ribosomal protein L25 OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=rplY PE=3 SV=2
Length = 204
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 22/147 (14%)
Query: 71 RKAGRVPSIVFEQEDGQHGGNKRL---ISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEF 127
R+ G +P++++ G+K+ I++ TN++ K + H G F++ + +EV +
Sbjct: 25 RRNGLIPAVIY--------GDKQAPIAIAINTNEVTKRI-HAGG--FMTTVATIEVDGK- 72
Query: 128 GSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGG 187
K +VLP+ L D L+V FLR + +++P+ F + SPGL+ GG
Sbjct: 73 -------KHKVLPKDYQLDPVRDFTLHVDFLRVSGNTQVTVEIPVHFINEAKSPGLKVGG 125
Query: 188 YLNTIKRTVKFLCPADIVPPYIDVDLS 214
LN ++ V+ CPAD +P + ++DLS
Sbjct: 126 VLNIVRHEVEVHCPADAIPEFFNIDLS 152
>sp|Q8FZE8|RL25_BRUSU 50S ribosomal protein L25 OS=Brucella suis biovar 1 (strain 1330)
GN=rplY PE=3 SV=1
Length = 207
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 101/194 (52%), Gaps = 23/194 (11%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR---LISVQTNQIRKLVGHLGRSFFV 115
R G S + R+ G++P++++ G+K+ I+V +I + G F
Sbjct: 12 RTRVGKGSSRELRRNGQIPAVIY--------GDKQEPLAIAVSYKEIFYKIHGGG---FK 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
+ + +EV + K++VLP+ L D P +V FLR ++++ ++VP+ F+
Sbjct: 61 TTVATIEVDGK--------KIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFK 112
Query: 176 GDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV-HPALK 234
++ +PG+++GG LN ++ V+ + PA+ +P +++DLS L++ + +K+ A
Sbjct: 113 NEEAAPGIKRGGVLNVVRHDVELIVPANAIPEALEIDLSGLEIGDSVHISAVKLPKGATP 172
Query: 235 LLRSKDEPVCKIAG 248
++ +D + IA
Sbjct: 173 AIQDRDFTIATIAA 186
>sp|B0CHX4|RL25_BRUSI 50S ribosomal protein L25 OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=rplY PE=3 SV=1
Length = 207
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 101/194 (52%), Gaps = 23/194 (11%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR---LISVQTNQIRKLVGHLGRSFFV 115
R G S + R+ G++P++++ G+K+ I+V +I + G F
Sbjct: 12 RTRVGKGSSRELRRNGQIPAVIY--------GDKQEPLAIAVSYKEIFYKIHGGG---FK 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
+ + +EV + K++VLP+ L D P +V FLR ++++ ++VP+ F+
Sbjct: 61 TTVATIEVDGK--------KIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFK 112
Query: 176 GDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV-HPALK 234
++ +PG+++GG LN ++ V+ + PA+ +P +++DLS L++ + +K+ A
Sbjct: 113 NEEAAPGIKRGGVLNVVRHDVELIVPANAIPEALEIDLSGLEIGDSVHISAVKLPKGATP 172
Query: 235 LLRSKDEPVCKIAG 248
++ +D + IA
Sbjct: 173 AIQDRDFTIATIAA 186
>sp|Q8YIG3|RL25_BRUME 50S ribosomal protein L25 OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rplY PE=3 SV=2
Length = 207
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 101/194 (52%), Gaps = 23/194 (11%)
Query: 59 RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR---LISVQTNQIRKLVGHLGRSFFV 115
R G S + R+ G++P++++ G+K+ I+V +I + G F
Sbjct: 12 RTRVGKGSSRELRRNGQIPAVIY--------GDKQEPLAIAVSYKEIFYKIHGGG---FK 60
Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
+ + +EV + K++VLP+ L D P +V FLR ++++ ++VP+ F+
Sbjct: 61 TTVATIEVDGK--------KIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFK 112
Query: 176 GDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV-HPALK 234
++ +PG+++GG LN ++ V+ + PA+ +P +++DLS L++ + +K+ A
Sbjct: 113 NEEAAPGIKRGGVLNVVRHDVELIVPANAIPEALEIDLSGLEIGDSVHISAVKLPKGATP 172
Query: 235 LLRSKDEPVCKIAG 248
++ +D + IA
Sbjct: 173 AIQDRDFTIATIAA 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,951,833
Number of Sequences: 539616
Number of extensions: 4426445
Number of successful extensions: 9889
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 9485
Number of HSP's gapped (non-prelim): 384
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)