Query 025088
Match_columns 258
No_of_seqs 133 out of 1131
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1feu_A 50S ribosomal protein L 100.0 4.9E-54 1.7E-58 377.3 20.5 176 52-251 3-179 (206)
2 2zjr_S 50S ribosomal protein L 100.0 1.9E-52 6.3E-57 373.2 11.0 174 58-252 2-177 (237)
3 1b75_A Protein (50S ribosomal 99.9 4.2E-29 1.4E-33 194.0 3.5 93 52-160 2-94 (94)
4 3lyw_A YBBR family protein; st 95.0 0.15 5.1E-06 38.7 8.7 73 167-246 4-83 (90)
5 2l3u_A YBBR family protein; be 92.4 0.048 1.6E-06 41.4 1.7 79 168-252 5-92 (98)
6 2kq1_A BH0266 protein; solutio 86.8 2.8 9.5E-05 32.4 7.8 80 164-249 8-98 (119)
7 2kps_A Uncharacterized protein 63.1 4 0.00014 30.7 2.4 72 169-248 6-86 (98)
8 2nwf_A Ubiquinol-cytochrome C 43.0 14 0.00048 29.5 2.6 18 208-225 3-20 (141)
9 2lyx_A Uncharacterized protein 30.7 90 0.0031 23.2 5.2 36 117-159 49-84 (87)
10 1q7l_B Aminoacylase-1; catalys 26.8 45 0.0015 23.5 2.9 25 59-84 21-45 (88)
11 2kxy_A Uncharacterized protein 25.5 1.5E+02 0.005 21.6 5.7 74 169-249 10-90 (100)
12 1zps_A PRA-CH, phosphoribosyl- 23.4 1.7E+02 0.0057 23.6 5.9 50 73-126 21-71 (138)
13 1bdf_A RNA polymerase alpha su 20.6 51 0.0017 28.5 2.5 27 221-248 109-135 (235)
No 1
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=100.00 E-value=4.9e-54 Score=377.28 Aligned_cols=176 Identities=26% Similarity=0.436 Sum_probs=167.0
Q ss_pred eeEEEEEcCCCCchHhHHHHHcCCccEEEecCcCCCCCCceeEEEEeHHHHHHHHhhcCcccceeEEEEEEE-CCccCCC
Q 025088 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEV-RSEFGSG 130 (258)
Q Consensus 52 ~~L~a~~R~~~Gk~~arkLRr~G~VPaVIYG~~~g~~G~~~~~I~v~~~el~k~l~~~g~~~f~s~l~~L~v-~g~~~~~ 130 (258)
.+|+|+.|+ |+++|+|||+|+|||||||+ |.+ ++|+++.++|.+++++.+. +++|+|++ +|+
T Consensus 3 ~~l~a~~R~---k~aarrLRr~G~VPaVvYG~-----~~e-~~i~v~~~el~~~l~~~~~----~~vi~L~i~~G~---- 65 (206)
T 1feu_A 3 YRLKAYYRE---GEKPSALRRAGKLPGLMYNR-----HLN-RKVYVDLVEFDKVFRQASI----HHVIVLELPDGQ---- 65 (206)
T ss_dssp EEEECEECS---SSCHHHHHHTTEEEEEEECS-----SCE-EEEEEEHHHHHHHHHHHTT----TSEEEEECTTSC----
T ss_pred eEEEEEEeC---ChHHHHHHHCCCceEEEEcC-----Cce-EEEEEcHHHHHHHHhhcCC----cEEEEEEEcCCC----
Confidence 689999999 78899999999999999997 457 9999999999999987553 78999999 874
Q ss_pred CccceEeEEEeeeeeccCCCCceEEEEEEeCCCCeEEEEEeEEEEecCCCcccccCeEEEEEeeEEEEEeeCCCCCCeEE
Q 025088 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPADIVPPYID 210 (258)
Q Consensus 131 ~~~~~~~vliKeVQ~hpvt~~ilHVDF~~v~~~~~v~v~VPV~~~Ge~~s~Gvk~GG~L~~~~~~V~V~~~p~~IPe~Ie 210 (258)
+++|++||||+||+++.++|||||++++ ++|+++|||+|+|+ |+|+|+||+|++.+++|+|+|+|.+||++|+
T Consensus 66 ----~~~vlikdvQ~hpv~~~i~HvDF~~v~~-~~v~v~VPv~~~G~--~~gvk~GG~l~~~~~~v~V~~~p~~IPe~I~ 138 (206)
T 1feu_A 66 ----SLPTLVRQVNLDKRRRRPEHVDFFVLSD-EPVEMYVPLRFVGT--PAGVRAGGVLQEIHRDILVKVSPRNIPEFIE 138 (206)
T ss_dssp ----EEEEEEEEEEECSSSSCEEEEEEEECCS-SCEEEEEEEEEESC--CHHHHTTCEEEECCSEEEEEECGGGCCSCEE
T ss_pred ----EEEEEEEEeEeCCCCCCeEEEEEEEECC-EEEEEEeeEEEEcC--cccccCceEEEEEEeEEEEEEcHHHCCccEE
Confidence 6799999999999999999999999999 99999999999998 7999999999999999999999999999999
Q ss_pred EEcCCCCCCCeEEEeccCCCCCeEEecCCCccEEEEEcccc
Q 025088 211 VDLSELDVEQKILAGDLKVHPALKLLRSKDEPVCKIAGGRA 251 (258)
Q Consensus 211 VDvS~L~iGd~I~v~DL~lp~gv~ll~d~e~vVvsV~~~r~ 251 (258)
||||+|++||+||++||++|+|+++++|+|++||+|.+|++
T Consensus 139 VDvs~L~iGdsi~v~Dl~lP~gv~~~~d~d~~V~~V~~~~~ 179 (206)
T 1feu_A 139 VDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAVVPPED 179 (206)
T ss_dssp EECTTCCTTEEEEGGGSCCCTTCEESSCTTCEEEEEECSSS
T ss_pred EEcccCCCCCEEEEeeccCCCCcEEcCCCCcEEEEEeCCCc
Confidence 99999999999999999999999999999999999999984
No 2
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ...
Probab=100.00 E-value=1.9e-52 Score=373.21 Aligned_cols=174 Identities=18% Similarity=0.339 Sum_probs=163.8
Q ss_pred EcCCCCchHhHHHHHcCCccEEEecCcCCCCCCceeEEEEeHHHHHHHHhhcCcccceeEEEEEEECC-ccCCCCccceE
Q 025088 58 PRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRS-EFGSGDLIEKV 136 (258)
Q Consensus 58 ~R~~~Gk~~arkLRr~G~VPaVIYG~~~g~~G~~~~~I~v~~~el~k~l~~~g~~~f~s~l~~L~v~g-~~~~~~~~~~~ 136 (258)
+|+.+||+++||| |+|+||||||| + .++++|+++.++|.+++++.+. +++|+|+++| + ++
T Consensus 2 ~R~~~GKgaaRrL-r~G~VPaVvYG-g-----~e~v~i~v~~~el~k~l~~~~~----~~li~L~IdG~~--------~~ 62 (237)
T 2zjr_S 2 ELTAKPRTPKQKL-DESMIAAVAYN-K-----ENNVSFALDRKAFDRAFRQQST----TGLFDITVEGGE--------TF 62 (237)
T ss_dssp CCCBCCSCCHHHH-SSSCCCEEEES-S-----SCCCCCBCCHHHHHHHHHHHTT----SCCCBCCCTTCC--------CC
T ss_pred cccccCcHHHHHH-hCCCCCEEEeC-C-----CCCEEEEECHHHHHHHHHhcCC----cEEEEEEECCce--------eE
Confidence 6999999999999 99999999998 4 4789999999999999987442 7999999998 5 56
Q ss_pred eEEEeeeeeccCCCCceEEEEEEeCCCCeEEEEEeEEEEecCCCcccccCeEEEEEeeEEEEEe-eCCCCCCeEEEEcCC
Q 025088 137 RVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLC-PADIVPPYIDVDLSE 215 (258)
Q Consensus 137 ~vliKeVQ~hpvt~~ilHVDF~~v~~~~~v~v~VPV~~~Ge~~s~Gvk~GG~L~~~~~~V~V~~-~p~~IPe~IeVDvS~ 215 (258)
+||+|+||+||+|++++|||||+++++++|+++|||+|+|+ |+|+|+||+|++.+++|+|+| +|.+||++|+||||+
T Consensus 63 ~vliKdvQ~hPvk~~ilHVDF~~V~~~ekV~v~VPV~~vGe--~~GvK~GGvL~~~~~eveV~~~lP~~IPe~IeVDVs~ 140 (237)
T 2zjr_S 63 PALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGR--SQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTK 140 (237)
T ss_dssp BCCEEEEEECSSSCCEEEEEEECCCSSCCCEEEEECEEESC--CTTTTTTSEEECSCSEEEEECCCTTCCCSCCEEECTT
T ss_pred EEEEEEEEecCCCCCeEEEEEEEECCCCEEEEEEeEEEecC--CccccCCcEEEEEEeEEEEEEeCHHHCCccEEEEccc
Confidence 89999999999999999999999999999999999999997 799999999999999999999 999999999999999
Q ss_pred CCCCCeEEEeccCCCCCeEEecCCCccEEEEEccccc
Q 025088 216 LDVEQKILAGDLKVHPALKLLRSKDEPVCKIAGGRAS 252 (258)
Q Consensus 216 L~iGd~I~v~DL~lp~gv~ll~d~e~vVvsV~~~r~~ 252 (258)
|++||+||++||++|+|+++++|+|++||+|..|+.+
T Consensus 141 LeiGdsI~v~DL~LPeGv~l~~d~d~vVvsV~~p~~~ 177 (237)
T 2zjr_S 141 MNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPRLT 177 (237)
T ss_dssp CCSSCEEETTTSCCSTTCCCCSCTTCEEEEEECCC--
T ss_pred CCCCCEEEeeeccCCCCcEEcCCCCcEEEEEEcCCCC
Confidence 9999999999999999999999999999999999853
No 3
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=99.95 E-value=4.2e-29 Score=194.03 Aligned_cols=93 Identities=22% Similarity=0.331 Sum_probs=84.2
Q ss_pred eeEEEEEcCCCCchHhHHHHHcCCccEEEecCcCCCCCCceeEEEEeHHHHHHHHhhcCcccceeEEEEEEECCccCCCC
Q 025088 52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGD 131 (258)
Q Consensus 52 ~~L~a~~R~~~Gk~~arkLRr~G~VPaVIYG~~~g~~G~~~~~I~v~~~el~k~l~~~g~~~f~s~l~~L~v~g~~~~~~ 131 (258)
++|+|++|+.+||+++|+||++|+|||||||+ |.++++|+++.++|.+++++.+ |.+++|+|+++|+
T Consensus 2 ~~l~a~~R~~~Gk~~arrLRr~G~vPaVvYG~-----~~e~~~i~v~~~~~~~~l~~~~---~~~~~i~L~i~G~----- 68 (94)
T 1b75_A 2 FTINAEVRKEQGKGASRRLRAANKFPAIIYGG-----KEAPLAIELDHDKVMNMQAKAE---FYSEVLTIVVDGK----- 68 (94)
T ss_dssp CCEEECSSCCSSSSSSSSTTTTTBCCEEEECS-----SSCCEEECCBSHHHHHHHTTTH---HHHTCEEEEESSC-----
T ss_pred eEEEEEEecccCChHHHHHHHCCCceEEEECC-----CCCCEEEEECHHHHHHHHhccC---cceEEEEEEECCE-----
Confidence 57899999999999999999999999999997 4589999999999999997533 5578999999984
Q ss_pred ccceEeEEEeeeeeccCCCCceEEEEEEe
Q 025088 132 LIEKVRVLPRKVHLHSGTDAPLNVTFLRA 160 (258)
Q Consensus 132 ~~~~~~vliKeVQ~hpvt~~ilHVDF~~v 160 (258)
+++|++||||+||++++++||||++|
T Consensus 69 ---~~~vlikdvQ~hp~~~~i~HvDF~~v 94 (94)
T 1b75_A 69 ---EIKVKAQDVQRHPYKPKLQHIDFVRA 94 (94)
T ss_dssp ---EEEECCSEEECCSSSCCCCEEEEEBC
T ss_pred ---EEEEEEEEEEeCCCCCCeEEEEEEEC
Confidence 67899999999999999999999985
No 4
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=94.98 E-value=0.15 Score=38.70 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=49.0
Q ss_pred EEEEeEEEEecCCCcccccCeEEEEEeeEEEEEeeC-CCCCC----eEEEEcCCCCCCCe-EEEeccCCCCCeEEec-CC
Q 025088 167 KIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPA-DIVPP----YIDVDLSELDVEQK-ILAGDLKVHPALKLLR-SK 239 (258)
Q Consensus 167 ~v~VPV~~~Ge~~s~Gvk~GG~L~~~~~~V~V~~~p-~~IPe----~IeVDvS~L~iGd~-I~v~DL~lp~gv~ll~-d~ 239 (258)
+.+|||.+.|.+ .|-.+.....+|+|+... ..... +..||+|++..|+. +.|+ +.+|.|+++.. +|
T Consensus 4 tytVPv~~~Nlp------~~~~v~~~~~tV~V~v~G~r~~~~~~di~A~VDLsg~~~G~~~~~V~-v~~P~G~~lv~vsP 76 (90)
T 3lyw_A 4 TLTLSLIAKNTP------ANSMIMTKLPSVRVKTEGYNPSINVNELFAYVDLSGSEPGEHDYEVK-VEPIPNIKIVEISP 76 (90)
T ss_dssp EEEEEEEEESCC------TTEEECSCCCEEEEEEEECCTTCCSTTCEEEEECTTCCSEEEEEECE-ECCCTTEEEEEEES
T ss_pred eEEeeEEEeeCC------CCcEEecCCCEEEEEEEecCcCCChHHEEEEEECcCCCCCcEeEEEE-EECCCCCEEEEEcc
Confidence 579999999974 233333333566665542 11111 46899999999984 4455 89999999987 77
Q ss_pred CccEEEE
Q 025088 240 DEPVCKI 246 (258)
Q Consensus 240 e~vVvsV 246 (258)
+.+-...
T Consensus 77 ~~V~~~~ 83 (90)
T 3lyw_A 77 RVVTLQL 83 (90)
T ss_dssp SEEEEEE
T ss_pred ceEEEEe
Confidence 7766554
No 5
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=92.42 E-value=0.048 Score=41.42 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=50.6
Q ss_pred EEEeEEEEecCCCcccccCeEEEEEeeEEEEEee--CC---CC-CC--eEEEEcCCCCCCCeEEEeccCCCCCeEEec-C
Q 025088 168 IDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCP--AD---IV-PP--YIDVDLSELDVEQKILAGDLKVHPALKLLR-S 238 (258)
Q Consensus 168 v~VPV~~~Ge~~s~Gvk~GG~L~~~~~~V~V~~~--p~---~I-Pe--~IeVDvS~L~iGd~I~v~DL~lp~gv~ll~-d 238 (258)
.+|||.+.|.+ .++ .+...-.+|+|.+. .. .+ ++ .+.+|+|++..|..-.-=.+.+|+|+++.. +
T Consensus 5 ~~VPV~v~n~~--~~~----~v~~~p~~V~V~v~G~~~~l~~l~~~di~~~vDls~l~~G~~~v~v~v~~P~~~~~v~i~ 78 (98)
T 2l3u_A 5 YDLPIVLRNLP--EDL----VLEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSIP 78 (98)
T ss_dssp CCCSCEEESCC--TTE----EESSCCCCCCCEEECCHHHHTTCCGGGCBCEEECSSCCSBCCEECCCCBCSSSCEEEECC
T ss_pred EecCEEEEeCC--Cce----EEEcCCCEEEEEEEECHHHhhhCChhhEEEEEEecCCcCceEEEeEEEECCCCcEEEEeC
Confidence 36899999963 333 33333344444443 21 11 11 567899999999744333578999999875 8
Q ss_pred CCccEEEEEccccc
Q 025088 239 KDEPVCKIAGGRAS 252 (258)
Q Consensus 239 ~e~vVvsV~~~r~~ 252 (258)
|..+-++|..-..|
T Consensus 79 P~~V~V~i~e~~~E 92 (98)
T 2l3u_A 79 DVTYTLKAKEDPLE 92 (98)
T ss_dssp CEECCEEECCCSSC
T ss_pred CCEEEEEEeccccc
Confidence 88888888655443
No 6
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=86.76 E-value=2.8 Score=32.44 Aligned_cols=80 Identities=14% Similarity=0.046 Sum_probs=53.0
Q ss_pred CeEEEEEeEEEEecCCCcccccCeEEEEEeeEEEEEeeCC-----CC---CC--eEEEEcCCCCCCC-eEEEeccCCCCC
Q 025088 164 ALLKIDVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPAD-----IV---PP--YIDVDLSELDVEQ-KILAGDLKVHPA 232 (258)
Q Consensus 164 ~~v~v~VPV~~~Ge~~s~Gvk~GG~L~~~~~~V~V~~~p~-----~I---Pe--~IeVDvS~L~iGd-~I~v~DL~lp~g 232 (258)
...-.+|||.+.+.+ .|-.+.-.-.+|+|..... .+ ++ ...+|+|+|..|. .+.+.=-.+|+|
T Consensus 8 ~~~~~~VPV~v~~~~------~~~~v~~~p~~V~V~l~G~~~~l~~~~~~~~~i~~~vDLs~l~~G~~~vpv~v~~lp~~ 81 (119)
T 2kq1_A 8 NLSLGELELTVLYDE------ERYDIVEQTETVQVDLEGPRGVLTVFRFARPSYEVFVDLTEAGEGSHTVDVEHRGFPGD 81 (119)
T ss_dssp EEEEEEEEEEEECCT------TTCEEEECCCEEEEEEEECHHHHHHHTTSCCCCEEEEECTTCCBEEEEEECEEESSCTT
T ss_pred eEEEEEeeEEEEECC------CCEEEECCCCEEEEEEEECHHHhhhccccccCEEEEEECccCCCCeEEEEEEEecCCCC
Confidence 455678999999853 3445554455666665532 11 23 5689999999997 333332248999
Q ss_pred eEEecCCCccEEEEEcc
Q 025088 233 LKLLRSKDEPVCKIAGG 249 (258)
Q Consensus 233 v~ll~d~e~vVvsV~~~ 249 (258)
+++-.+|+.+-++|...
T Consensus 82 v~v~v~P~~V~V~i~~~ 98 (119)
T 2kq1_A 82 LAVTVEPRMARVQLEER 98 (119)
T ss_dssp SEEEESCCEEEEEEESC
T ss_pred eEEEEcCCEEEEEEEEE
Confidence 99666999988888543
No 7
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=63.15 E-value=4 Score=30.70 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=44.9
Q ss_pred EEeEEEEecCCCcccccCeEEEEEeeEEEEEeeCC--CC----CCe--EEEEcCCCCCCC-eEEEeccCCCCCeEEecCC
Q 025088 169 DVPLVFRGDDVSPGLRKGGYLNTIKRTVKFLCPAD--IV----PPY--IDVDLSELDVEQ-KILAGDLKVHPALKLLRSK 239 (258)
Q Consensus 169 ~VPV~~~Ge~~s~Gvk~GG~L~~~~~~V~V~~~p~--~I----Pe~--IeVDvS~L~iGd-~I~v~DL~lp~gv~ll~d~ 239 (258)
+|||.+.|.+ .+ ..+.....+|.|+.... .| ++. ..+|+|+|..|. .+-+ .+.+|+|+++...
T Consensus 6 ~VpI~v~nl~--~~----~~v~~~~~~V~V~v~G~~~~l~~l~~~di~a~vDLs~l~~G~~~vpv-~v~lP~gv~vv~~- 77 (98)
T 2kps_A 6 DLPIVLRNLP--ED----LVLEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKI-YWQLPAGIEMVSI- 77 (98)
T ss_dssp GSCCEECSCC--TT----EEESCCCCCCCCCCCCCHHHHHTCCTTTSBCEECCTTCCSSCEEEEC-CCBCSSCCCCCCC-
T ss_pred ecCEEEEeCC--CC----eEEECCCCEEEEEEEECHHHHhhCChhhEEEEEECCCCCCCeEEEeE-EEECCCCEEEEec-
Confidence 5789998863 23 33333335555555422 11 333 589999999998 4555 6889999998873
Q ss_pred CccEEEEEc
Q 025088 240 DEPVCKIAG 248 (258)
Q Consensus 240 e~vVvsV~~ 248 (258)
..+-++|..
T Consensus 78 ~~v~vtl~~ 86 (98)
T 2kps_A 78 PDVTYTLKA 86 (98)
T ss_dssp CEEEECEEE
T ss_pred CcEEEEEEE
Confidence 334444433
No 8
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=43.05 E-value=14 Score=29.51 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=16.4
Q ss_pred eEEEEcCCCCCCCeEEEe
Q 025088 208 YIDVDLSELDVEQKILAG 225 (258)
Q Consensus 208 ~IeVDvS~L~iGd~I~v~ 225 (258)
.++||+|.|+.|+.+++.
T Consensus 3 ~~~vd~s~l~~g~~~~v~ 20 (141)
T 2nwf_A 3 SIFVDVSSVEPGVQLTVK 20 (141)
T ss_dssp CEEEECTTCCTTEEEEEE
T ss_pred CEEEecccCCCCCEEEEE
Confidence 689999999999998876
No 9
>2lyx_A Uncharacterized protein YQZG; PF13028, DUF3889, structural genomics, unknown function; NMR {Bacillus subtilis subsp}
Probab=30.71 E-value=90 Score=23.20 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=27.3
Q ss_pred EEEEEEECCccCCCCccceEeEEEeeeeeccCCCCceEEEEEE
Q 025088 117 RLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLR 159 (258)
Q Consensus 117 ~l~~L~v~g~~~~~~~~~~~~vliKeVQ~hpvt~~ilHVDF~~ 159 (258)
-.|.|-|..++ +.-.+.=.|-+||.|++++-++|.+
T Consensus 49 E~Fklwl~e~~-------kefgV~V~I~f~p~T~kv~sI~~~E 84 (87)
T 2lyx_A 49 KQYHLTLREGS-------KEFGVFVTISFDPYSQKVNKIAILE 84 (87)
T ss_dssp EEEEEEEEETT-------EEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEEEEeCC-------EEEEEEEEEEEECCCCeEEEEEEEE
Confidence 34777776431 4556667899999999999999976
No 10
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=26.77 E-value=45 Score=23.50 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.3
Q ss_pred cCCCCchHhHHHHHcCCccEEEecCc
Q 025088 59 RASPGTRVSVKERKAGRVPSIVFEQE 84 (258)
Q Consensus 59 R~~~Gk~~arkLRr~G~VPaVIYG~~ 84 (258)
-...|...+|.+++.| +|++.||..
T Consensus 21 ~~~~g~TDar~~~~~g-ip~v~fGPg 45 (88)
T 1q7l_B 21 EIMPAAGDNRYIRAVG-VPALGFSPM 45 (88)
T ss_dssp EECCSCSHHHHHHHTT-CCEEEECCC
T ss_pred eeeceeCcHHHHHHcC-CCEEEECCC
Confidence 3356777899999886 899999985
No 11
>2kxy_A Uncharacterized protein; beta strand protein, structural genomics, PSI-2, protein STR initiative; NMR {Streptococcus thermophilus}
Probab=25.54 E-value=1.5e+02 Score=21.59 Aligned_cols=74 Identities=11% Similarity=0.146 Sum_probs=43.0
Q ss_pred EEeEEEEecCC-CcccccCeEEEEEeeEEEEEeeCC------CCCCeEEEEcCCCCCCCeEEEeccCCCCCeEEecCCCc
Q 025088 169 DVPLVFRGDDV-SPGLRKGGYLNTIKRTVKFLCPAD------IVPPYIDVDLSELDVEQKILAGDLKVHPALKLLRSKDE 241 (258)
Q Consensus 169 ~VPV~~~Ge~~-s~Gvk~GG~L~~~~~~V~V~~~p~------~IPe~IeVDvS~L~iGd~I~v~DL~lp~gv~ll~d~e~ 241 (258)
+|||.+..... +.|..-+ -+...-.+|+|.+..+ .|. ..+|++++.-.-+ .--+|.+ +|+++ +|+.
T Consensus 10 ~VpV~~~~~G~~~~gy~v~-~~~~~P~~VtV~G~~~~L~~I~~v~--~~vdls~~~~~~~-~~v~L~~-~gV~~--~p~~ 82 (100)
T 2kxy_A 10 SVPVKLELTGDKASNVSSI-SYSFDRGHVTIVGSQEAMDKIDSIT--VPVDISQVTEDTS-KTLELKA-EGVTV--QPST 82 (100)
T ss_dssp ECCEEEEEESCCCTTEEEE-EEEESCCCCEEEECHHHHHHCSCEE--EEEECTTCCSCEE-EEEECCC-TTEEE--ESCE
T ss_pred EEEEEEEEecccCCCeEEE-eEEEccCEEEEEECHHHhccccEEE--EeEecccCcCCEE-EEEEEEe-CCeEE--ecCE
Confidence 56666544321 2333322 2234446788888654 444 5799999985444 3356777 99976 4666
Q ss_pred cEEEEEcc
Q 025088 242 PVCKIAGG 249 (258)
Q Consensus 242 vVvsV~~~ 249 (258)
+=++|...
T Consensus 83 V~V~v~v~ 90 (100)
T 2kxy_A 83 VKVNLKVT 90 (100)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 65555443
No 12
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=23.41 E-value=1.7e+02 Score=23.60 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=31.3
Q ss_pred cCCccEEEecCcCCCCCCceeEEEEeHHHHHHHHhhcCcccceeE-EEEEEECCc
Q 025088 73 AGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSR-LFDLEVRSE 126 (258)
Q Consensus 73 ~G~VPaVIYG~~~g~~G~~~~~I~v~~~el~k~l~~~g~~~f~s~-l~~L~v~g~ 126 (258)
.|+||+|+-.... |.--..-.+++..|.+.+.. |...|.|+ -=.|=..|+
T Consensus 21 ~GLipaIvQd~~t---g~VLMlayMN~EAl~~Tl~t-g~~~y~SRSR~~LW~KGe 71 (138)
T 1zps_A 21 EDLIIAVAQDHET---GEVLMVAYMNREALRRTLET-GTAHYWSTSRGKLWLKGE 71 (138)
T ss_dssp CCCEEEEEEETTT---CCEEEEEEECHHHHHHHHHH-SBCEEEETTTTEEEETTT
T ss_pred CCcEEEEEEECCC---CCEEEEEecCHHHHHHHHhc-CcEEEEcCCCCccccCcc
Confidence 6999999987532 33234567899999999986 43333332 223445554
No 13
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=20.60 E-value=51 Score=28.50 Aligned_cols=27 Identities=11% Similarity=0.415 Sum_probs=23.9
Q ss_pred eEEEeccCCCCCeEEecCCCccEEEEEc
Q 025088 221 KILAGDLKVHPALKLLRSKDEPVCKIAG 248 (258)
Q Consensus 221 ~I~v~DL~lp~gv~ll~d~e~vVvsV~~ 248 (258)
.++.+||..|++++++ ++|..+|++..
T Consensus 109 ~VtA~Di~~~~~v~iv-npd~~IatL~~ 135 (235)
T 1bdf_A 109 PVTAADITHDGDVEIV-KPQHVICHLTD 135 (235)
T ss_dssp EEEGGGBCCCSSCEES-CTTCEEEEECS
T ss_pred EEEhHhCCCCCCCEEc-CCCeEEEEECC
Confidence 6999999999999998 57899999976
Done!