BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025089
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04209|CLC2_ARATH Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1
Length = 258
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/266 (53%), Positives = 187/266 (70%), Gaps = 34/266 (12%)
Query: 5 DSVDSVPVAEYTHSFD--DTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG- 61
D+ +SVPV + SFD D+ + ++ + D S DD FA+ +S YG Y++G
Sbjct: 15 DASESVPV---SGSFDATDSFSAFDGSLQVED--------SVDDVFAAPSSDYGAYSNGD 63
Query: 62 ---GS----DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
GS DGPILPPPS+M +EGFALREWRR+NAI+LEEKEK+EKE+L QIIEEA++Y
Sbjct: 64 GIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQY 123
Query: 115 KLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKK 174
K EF++K VT ENNKA+NRE+EKL++ +Q+KF+ E+ KNYWKAIAEL+P EVP IEK++
Sbjct: 124 KEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKRR 183
Query: 175 AKRDQE--KKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASAPATDTK 232
K++Q+ KKP++ VIQGPKPGKPT+L+RMRQI++KLKHN P+HLK + P S A
Sbjct: 184 GKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPPSEEA---- 239
Query: 233 TSDAAAKAGPSQPAAAATPTEVVVAA 258
A P + PTE V AA
Sbjct: 240 -------AAPPKNVPETKPTEAVTAA 258
>sp|F4J5M9|CLC3_ARATH Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2
SV=1
Length = 258
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/160 (66%), Positives = 123/160 (76%), Gaps = 3/160 (1%)
Query: 67 ILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTR 126
ILPPPS M EEGFALREWRR NA+RLEEKEK+EKEM+ QI+E AE+YK EFY K VT
Sbjct: 85 ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTI 144
Query: 127 ENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIV 186
ENNK NRE+EK F+ +Q+KF+ EA KN WKAIAELIP EVP IE + K+ K +I
Sbjct: 145 ENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKK---KTATIT 201
Query: 187 VIQGPKPGKPTNLSRMRQIIIKLKHNTPAHLKPSPPPASA 226
VIQGPKPGKPT+LSRMRQ++ KLKHN P H+KP P S
Sbjct: 202 VIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPKLPSPSG 241
>sp|Q9SKU1|CLC1_ARATH Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2
SV=1
Length = 338
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 118/150 (78%), Gaps = 1/150 (0%)
Query: 63 SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122
SDGPILP P++M EEGF REWRR N I LEEKEKKEKEM NQII EAE++K FY K
Sbjct: 93 SDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKR 151
Query: 123 IVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKK 182
T E NK NRE+EKL+ A+Q+KFH E K+YWKAIAELIP EVP IEKK+ K+D +KK
Sbjct: 152 DKTIETNKTDNREKEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKK 211
Query: 183 PSIVVIQGPKPGKPTNLSRMRQIIIKLKHN 212
PS+ VIQGPKPGKPT+L RMRQI +KLK N
Sbjct: 212 PSVNVIQGPKPGKPTDLGRMRQIFLKLKTN 241
>sp|Q7XKE9|CLC1_ORYSJ Clathrin light chain 1 OS=Oryza sativa subsp. japonica
GN=Os04g0679100 PE=2 SV=1
Length = 301
Score = 184 bits (466), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 121/150 (80%), Gaps = 1/150 (0%)
Query: 62 GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
G DGPILPPP+ M EEG LREWRR+NAI LEEKE+KEKE+ QI+ EAEE+K FY K
Sbjct: 92 GGDGPILPPPAQMGAEEGILLREWRRQNAIVLEEKERKEKELRAQILAEAEEFKKAFYEK 151
Query: 122 SIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEK 181
I E NK NREREK+FVA Q+KFH EA K YWK+I+ELIP+E+ IE K+ K+D++K
Sbjct: 152 RIQNCETNKVHNREREKIFVAGQEKFHAEADKQYWKSISELIPHEIATIE-KRGKKDKDK 210
Query: 182 KPSIVVIQGPKPGKPTNLSRMRQIIIKLKH 211
KPSI VIQGPKPGKPT+LSRMRQI++KLKH
Sbjct: 211 KPSITVIQGPKPGKPTDLSRMRQILVKLKH 240
>sp|Q5Z402|CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica
GN=Os06g0731800 PE=2 SV=1
Length = 291
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/150 (64%), Positives = 121/150 (80%), Gaps = 2/150 (1%)
Query: 64 DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSI 123
+GP+LPPP+ M +EGF LREWRR+NAI LEEKEKKEKEM NQII +A+E+K F K
Sbjct: 76 NGPVLPPPNQMGADEGFLLREWRRQNAILLEEKEKKEKEMRNQIILDAKEFKKAFVEKRK 135
Query: 124 VTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKA--KRDQEK 181
+ E +K NREREKL++A+Q+KFH A K YWKAI+ELIP+E+ IEK+ A +D+EK
Sbjct: 136 LNVETSKDQNREREKLYLANQEKFHAGADKQYWKAISELIPHEIANIEKRGAKKDKDKEK 195
Query: 182 KPSIVVIQGPKPGKPTNLSRMRQIIIKLKH 211
KP IVVIQGPKPGKPT++SRMRQI++KLKH
Sbjct: 196 KPGIVVIQGPKPGKPTDMSRMRQILLKLKH 225
>sp|Q6Z3A8|CLC3_ORYSJ Clathrin light chain 3 OS=Oryza sativa subsp. japonica
GN=Os07g0461500 PE=3 SV=1
Length = 363
Score = 170 bits (431), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 117/158 (74%), Gaps = 9/158 (5%)
Query: 62 GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
G DGP+LPPP M EEG REWRR+NA+ LEEKE+KE+E +II EA+E+K F K
Sbjct: 133 GDDGPVLPPPEAM-KEEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFKRSFAEK 191
Query: 122 SIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQE- 180
+ + N+A NR+REKLF+A Q+KFH EA K YWKAIAE++P+E+P +EK+ +R+++
Sbjct: 192 RKLNGDTNRAQNRDREKLFLAKQEKFHGEAEKQYWKAIAEMVPHEIPGLEKRGKRREKQS 251
Query: 181 -------KKPSIVVIQGPKPGKPTNLSRMRQIIIKLKH 211
K+P +VV+QG KPGKPT+LSRMRQ+++KLK
Sbjct: 252 AEANAKAKQPGVVVVQGTKPGKPTDLSRMRQVLMKLKQ 289
>sp|P04975|CLCB_BOVIN Clathrin light chain B OS=Bos taurus GN=CLTB PE=1 SV=1
Length = 228
Score = 37.4 bits (85), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 33/168 (19%)
Query: 59 ADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEF 118
A+G +DG +D + +E ++R+WR E RL+E + K M + E+A++ E+
Sbjct: 79 ANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 138
Query: 119 YRKSIVTRENNKASNREREKLF-----------VASQQKFHDEAYKNYWKAIAELIPNEV 167
++ E NK +NR +K F VAS++ F E+ + E
Sbjct: 139 NQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKE------------ET 186
Query: 168 PAIEKKKAKRDQEKKPSIVVIQGPKPGKPT-NLSRMRQIIIKLKHNTP 214
P E +K + + PK K ++SR+R +++ LK TP
Sbjct: 187 PGTEWEKVAQ--------LCDFNPKSSKQCKDVSRLRSVLMSLKQ-TP 225
>sp|Q6IRU5|CLCB_MOUSE Clathrin light chain B OS=Mus musculus GN=Cltb PE=2 SV=1
Length = 229
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 36/178 (20%)
Query: 52 TSVYGEY---ADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQII 108
T+V G+ A+G +DG +D + +E ++R+WR E RL+E + K +
Sbjct: 70 TTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWR 129
Query: 109 EEAEEYKLEFYRKSIVTRENNKASNREREKLF-----------VASQQKFHDEAYKNYWK 157
E+A++ E+ ++ E NK +NR +K F VAS++ F E+
Sbjct: 130 EKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEAFVKES------ 183
Query: 158 AIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPT-NLSRMRQIIIKLKHNTP 214
E P E +K + + PK K ++SR+R +++ LK TP
Sbjct: 184 ------KEETPGTEWEKVAQ--------LCDFNPKSSKQCKDVSRLRSVLMSLKQ-TP 226
>sp|P08082|CLCB_RAT Clathrin light chain B OS=Rattus norvegicus GN=Cltb PE=1 SV=1
Length = 229
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 36/178 (20%)
Query: 52 TSVYGEY---ADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQII 108
T+V G+ A+G +DG +D + +E ++R+WR E RL+E + K +
Sbjct: 70 TTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWR 129
Query: 109 EEAEEYKLEFYRKSIVTRENNKASNREREKLF-----------VASQQKFHDEAYKNYWK 157
E+A++ E+ ++ E NK +NR +K F VAS++ F E+
Sbjct: 130 EKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEAFVKES------ 183
Query: 158 AIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPT-NLSRMRQIIIKLKHNTP 214
E P E +K + + PK K ++SR+R +++ LK TP
Sbjct: 184 ------KEETPGTEWEKVAQ--------LCDFNPKSSKQCKDVSRLRSVLMSLKQ-TP 226
>sp|O08585|CLCA_MOUSE Clathrin light chain A OS=Mus musculus GN=Clta PE=1 SV=2
Length = 235
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 56 GEY---ADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLE----EKEKKEKEMLNQII 108
GEY ++G +D D + E ++R+WR E RLE K+E E + I
Sbjct: 80 GEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI 139
Query: 109 EEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDE-AYKNYWKAIAELIPNEV 167
+E EE+ Y + + KA+NR ++ F +Q F D Y +A I
Sbjct: 140 KELEEW----YARQDEQLQKTKANNRVADEAFY--KQPFADLIGYVAAEEAFVNDIDESS 193
Query: 168 PAIEKKKAKRDQEKKPSIVVIQGPKPGKPT-NLSRMRQIIIKLKHNTPAH 216
P E ++ R + PK K ++SRMR ++I LK H
Sbjct: 194 PGTEWERVAR--------LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 235
>sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense
GN=gltB PE=1 SV=1
Length = 1515
Score = 35.8 bits (81), Expect = 0.29, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 178 DQEKKPSIVVIQGPKPGKPTNLS--RMRQIIIKLKHNTPAHLKPSPPP 223
+Q ++ I V QG KPG+ L ++ ++I +L+H+TP + SPPP
Sbjct: 959 NQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPP 1006
>sp|P09497|CLCB_HUMAN Clathrin light chain B OS=Homo sapiens GN=CLTB PE=1 SV=1
Length = 229
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 36/178 (20%)
Query: 52 TSVYGEY---ADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQII 108
T+V G+ A+G +DG +D + +E ++R+WR E RL+E + K +
Sbjct: 70 TTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEWR 129
Query: 109 EEAEEYKLEFYRKSIVTRENNKASNREREKLF-----------VASQQKFHDEAYKNYWK 157
E+A++ E+ ++ E NK +NR +K F VAS++ F E+ +
Sbjct: 130 EKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKE---- 185
Query: 158 AIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPT-NLSRMRQIIIKLKHNTP 214
E P E +K + + PK K ++SR+R +++ LK TP
Sbjct: 186 --------ETPGTEWEKVAQ--------LCDFNPKSSKQCKDVSRLRSVLMSLKQ-TP 226
>sp|Q8TCG1|CIP2A_HUMAN Protein CIP2A OS=Homo sapiens GN=KIAA1524 PE=1 SV=2
Length = 905
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 81 ALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKL-EFYRKSIVTRENNKASNRERE 137
+L+E ++ +L EKE++ KE+ NQ+++ E+KL ++K+ V E K +ERE
Sbjct: 768 SLKEQNEKSIAQLIEKEEQRKEVQNQLVD--REHKLANLHQKTKVQEEKIKTLQKERE 823
>sp|P08081|CLCA_RAT Clathrin light chain A OS=Rattus norvegicus GN=Clta PE=1 SV=1
Length = 248
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 35/182 (19%)
Query: 56 GEY---ADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLE----EKEKKEKEMLNQII 108
GEY ++G +D D + E ++R+WR E RLE K+E E + +
Sbjct: 81 GEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAV 140
Query: 109 EEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHD---------EAYKNYWKAI 159
+E EE+ Y + + KASNR ++ F +Q F D + +A
Sbjct: 141 KELEEW----YARQDEQLQKTKASNRVADEAFY--KQPFADVIGYVTNINHPCYSLEQAA 194
Query: 160 AELIPNEV----PAIEKKKAKRDQEKKPSIVVIQGPKPGKPT-NLSRMRQIIIKLKHNTP 214
E N++ P E ++ R + PK K ++SRMR ++I LK
Sbjct: 195 EEAFVNDIDESSPGTEWERVAR--------LCDFNPKSSKQAKDVSRMRSVLISLKQAPL 246
Query: 215 AH 216
H
Sbjct: 247 VH 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,732,856
Number of Sequences: 539616
Number of extensions: 4681330
Number of successful extensions: 29126
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 510
Number of HSP's that attempted gapping in prelim test: 27419
Number of HSP's gapped (non-prelim): 1767
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)