Query 025089
Match_columns 258
No_of_seqs 122 out of 216
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 02:36:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4031 Vesicle coat protein c 100.0 3.6E-34 7.8E-39 253.4 17.3 157 33-216 59-216 (216)
2 PF01086 Clathrin_lg_ch: Clath 100.0 1.8E-35 4E-40 262.6 6.3 122 65-212 96-219 (225)
3 KOG4031 Vesicle coat protein c 93.8 0.97 2.1E-05 41.4 11.2 82 51-133 81-163 (216)
4 PF08079 Ribosomal_L30_N: Ribo 74.6 31 0.00067 26.0 8.1 37 82-118 9-45 (71)
5 PRK13454 F0F1 ATP synthase sub 65.4 62 0.0014 28.1 9.2 12 82-93 56-67 (181)
6 PF01086 Clathrin_lg_ch: Clath 63.9 19 0.00041 32.5 5.9 55 80-134 116-170 (225)
7 CHL00019 atpF ATP synthase CF0 63.8 70 0.0015 27.6 9.2 12 82-93 49-60 (184)
8 CHL00118 atpG ATP synthase CF0 61.2 90 0.002 26.2 9.2 13 82-94 47-59 (156)
9 PRK07352 F0F1 ATP synthase sub 61.1 87 0.0019 26.7 9.2 27 104-130 80-106 (174)
10 COG3461 Uncharacterized conser 60.9 68 0.0015 26.4 7.9 72 91-165 10-86 (103)
11 KOG1029 Endocytic adaptor prot 59.2 1.2E+02 0.0027 33.4 11.5 13 153-165 410-424 (1118)
12 TIGR03321 alt_F1F0_F0_B altern 55.6 1E+02 0.0023 27.8 9.2 53 81-133 65-117 (246)
13 PF13019 Telomere_Sde2: Telome 52.5 18 0.00039 31.9 3.6 36 77-112 126-161 (162)
14 PF04568 IATP: Mitochondrial A 52.4 50 0.0011 27.0 5.9 40 77-116 61-100 (100)
15 PRK06231 F0F1 ATP synthase sub 51.6 1.4E+02 0.003 26.6 9.2 9 85-93 76-84 (205)
16 PRK14474 F0F1 ATP synthase sub 49.0 1.4E+02 0.0029 27.5 8.9 47 81-127 65-111 (250)
17 PRK13460 F0F1 ATP synthase sub 45.8 1.9E+02 0.0041 24.6 9.2 13 82-94 41-53 (173)
18 PF15466 DUF4635: Domain of un 45.2 96 0.0021 26.7 6.7 43 77-119 82-125 (135)
19 PF03179 V-ATPase_G: Vacuolar 44.8 1.5E+02 0.0033 23.2 8.3 48 87-134 13-61 (105)
20 KOG1772 Vacuolar H+-ATPase V1 44.7 1.3E+02 0.0029 25.1 7.3 40 87-126 15-55 (108)
21 PF01346 FKBP_N: Domain amino 43.4 73 0.0016 25.2 5.6 18 127-144 90-107 (124)
22 COG2811 NtpF Archaeal/vacuolar 42.6 2E+02 0.0043 24.0 9.4 51 81-131 22-72 (108)
23 PRK03963 V-type ATP synthase s 41.3 2.3E+02 0.005 24.3 9.8 62 136-212 83-144 (198)
24 PRK13428 F0F1 ATP synthase sub 40.7 2E+02 0.0042 28.7 9.2 37 82-118 62-98 (445)
25 PRK14472 F0F1 ATP synthase sub 37.3 2.6E+02 0.0057 23.8 9.2 14 82-95 43-56 (175)
26 TIGR01310 L7 60S ribosomal pro 36.5 1.9E+02 0.0041 26.9 7.8 42 83-124 11-52 (235)
27 PF11875 DUF3395: Domain of un 34.9 2.1E+02 0.0046 24.4 7.4 38 88-125 6-43 (151)
28 KOG1029 Endocytic adaptor prot 32.6 1.9E+02 0.0042 32.0 8.0 14 128-141 421-434 (1118)
29 PLN03086 PRLI-interacting fact 32.1 1.7E+02 0.0037 30.6 7.4 15 151-165 73-87 (567)
30 COG0488 Uup ATPase components 31.3 1.5E+02 0.0032 30.4 6.8 43 82-125 235-277 (530)
31 PRK07353 F0F1 ATP synthase sub 31.3 2.8E+02 0.0061 22.4 9.2 30 102-131 64-93 (140)
32 PRK15244 virulence protein Spv 30.3 34 0.00075 35.7 2.2 20 211-230 359-378 (591)
33 PF13220 DUF4028: Protein of u 29.3 57 0.0012 24.6 2.6 38 111-148 22-59 (65)
34 PRK13455 F0F1 ATP synthase sub 27.1 4E+02 0.0087 22.8 9.2 15 81-95 51-65 (184)
35 PF00249 Myb_DNA-binding: Myb- 27.0 83 0.0018 21.1 3.0 25 135-164 7-32 (48)
36 TIGR00570 cdk7 CDK-activating 27.0 5.3E+02 0.011 25.1 9.3 21 79-99 119-139 (309)
37 PRK05759 F0F1 ATP synthase sub 25.9 3.7E+02 0.0081 22.0 9.2 10 84-93 31-40 (156)
38 TIGR01147 V_ATP_synt_G vacuola 25.9 3.9E+02 0.0084 22.2 7.6 40 87-126 15-55 (113)
39 PF06936 Selenoprotein_S: Sele 24.4 5.1E+02 0.011 23.3 8.2 61 80-143 56-117 (190)
40 PF07295 DUF1451: Protein of u 24.2 3.2E+02 0.0069 23.5 6.7 48 77-124 11-58 (146)
41 PF10453 NUFIP1: Nuclear fragi 23.9 1.2E+02 0.0026 22.3 3.5 16 77-92 18-33 (56)
42 KOG1664 Vacuolar H+-ATPase V1 23.6 3.9E+02 0.0085 24.9 7.4 51 81-131 16-67 (220)
43 PF07139 DUF1387: Protein of u 22.7 2E+02 0.0044 27.9 5.7 33 81-113 183-218 (302)
44 COG1422 Predicted membrane pro 22.4 2.3E+02 0.005 26.0 5.7 49 99-147 69-117 (201)
45 COG0336 TrmD tRNA-(guanine-N1) 21.9 1.4E+02 0.0031 28.1 4.3 73 23-95 111-216 (240)
46 PRK00026 trmD tRNA (guanine-N( 21.1 1.7E+02 0.0037 27.6 4.7 74 23-96 113-218 (244)
47 KOG3088 Secretory carrier memb 20.3 8.2E+02 0.018 24.0 9.6 13 153-165 99-111 (313)
48 PF04521 Viral_P18: ssRNA posi 20.0 3.7E+02 0.008 22.9 6.0 31 83-113 67-101 (120)
No 1
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-34 Score=253.42 Aligned_cols=157 Identities=23% Similarity=0.335 Sum_probs=131.6
Q ss_pred CCCCCcCCCCCCCccccCCcccccccCCCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 33 SDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAE 112 (258)
Q Consensus 33 ~~~~~~~~~~~~~d~~~~~~~~~~~~s~~~sd~p~~p~p~~~~~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAe 112 (258)
+-++|..+|.+-|.+-+..-..+-+..||..++++.+.+.....+|||.||+||++|++||+|||..+++++++++++|.
T Consensus 59 p~~~~e~~g~~~d~~~~~~~~~~f~~~nG~~d~~a~is~~~~~~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAk 138 (216)
T KOG4031|consen 59 PQRHFEESGPGIDALNGAVGGDVFQEDNGPADGYAGISQGPRLRDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAK 138 (216)
T ss_pred cCCCccccCCCcchhhccccccccccCCCCcccccccCCCCCcccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45788888866555433333334445677788888888777788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHhhhhhhhcccCChHHHHHhhcCCCchhHHHhhhhhhccCCCcceeecCCC
Q 025089 113 EYKLEFYRKSIVTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPK 192 (258)
Q Consensus 113 e~id~FY~~rn~kkEknk~~NRe~Ek~FLa~re~F~~~a~gt~WERVaeLIDle~p~~Ek~~~kkd~~Kk~~i~vi~gpK 192 (258)
+.|++||.+|++++++++.+||++++.|+...+.| .+||.||||++|||+ +||
T Consensus 139 Kelddwy~~~~ek~~k~~~~nk~eee~~~~e~~~~---~~gTeWErv~kL~D~------------------------n~k 191 (216)
T KOG4031|consen 139 KELDDWYDQQNEKLEKTKANNKAEEEALVKENEEF---SPGTEWERVAKLCDF------------------------NPK 191 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccc---CCCchHHHHHHHHcC------------------------Ccc
Confidence 99999999999999999999988887777665553 467999999999998 466
Q ss_pred CCC-CchhhHHHHHHHHhcCCCCCC
Q 025089 193 PGK-PTNLSRMRQIIIKLKHNTPAH 216 (258)
Q Consensus 193 ~gK-~kDlSRMRqILLkLK~~pp~h 216 (258)
+.+ ++||||||+|||+|||.|.+|
T Consensus 192 ~sk~gkD~SRlrslL~~LK~aP~a~ 216 (216)
T KOG4031|consen 192 SSKQGKDVSRLRSLLISLKQAPGAA 216 (216)
T ss_pred chhccccHHHHHHHHHHhhhCcCCC
Confidence 667 699999999999999988764
No 2
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=100.00 E-value=1.8e-35 Score=262.57 Aligned_cols=122 Identities=39% Similarity=0.604 Sum_probs=56.7
Q ss_pred CCCCCCCCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHh
Q 025089 65 GPILPPPSD-MVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVAS 143 (258)
Q Consensus 65 ~p~~p~p~~-~~~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~Ek~FLa~ 143 (258)
++...++.. +..++|++||+||++|+++|++||+++++++++|+++|+++|++||.+|+.+|+++++.||++|++||++
T Consensus 96 ~~~~~~~~~~~~~E~~e~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~k~~nr~~ee~fl~~ 175 (225)
T PF01086_consen 96 GPSSISPAPPVEEEEPEAIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEKNKKQNREEEEEFLAK 175 (225)
T ss_dssp --------STTTTS-TTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred CccccCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334443333 3333499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCChHHHHHhhcCCCchhHHHhhhhhhccCCCcceeecCCCCCC-CchhhHHHHHHHHhcCC
Q 025089 144 QQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGK-PTNLSRMRQIIIKLKHN 212 (258)
Q Consensus 144 re~F~~~a~gt~WERVaeLIDle~p~~Ek~~~kkd~~Kk~~i~vi~gpK~gK-~kDlSRMRqILLkLK~~ 212 (258)
|+.| ..+||+|+||++||||. ++..+ ++|+||||+|||+||++
T Consensus 176 ~~~~--~~~~t~WerV~~Lid~~------------------------~~~~~~~kD~sRmR~iLl~LK~~ 219 (225)
T PF01086_consen 176 REEF--LQPGTEWERVAKLIDFN------------------------PKSSKSGKDVSRMREILLKLKGD 219 (225)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccc--CCCCCcHHHHHHHhCCC------------------------CCCCCCCCcHHHHHHHHHHhhhh
Confidence 9997 67899999999999992 22222 69999999999999944
No 3
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=0.97 Score=41.41 Aligned_cols=82 Identities=20% Similarity=0.099 Sum_probs=59.6
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025089 51 QTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEK-KEKEMLNQIIEEAEEYKLEFYRKSIVTRENN 129 (258)
Q Consensus 51 ~~~~~~~~s~~~sd~p~~p~p~~~~~eEpE~IReWREe~a~rIeEKD~-~e~E~keqi~kEAee~id~FY~~rn~kkEkn 129 (258)
.+++.++..+++... .-++...-..|--..-|+=++++-.++-+.++ .++||+++++|++++|.+.|-+++...+..|
T Consensus 81 ~f~~~nG~~d~~a~i-s~~~~~~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~n 159 (216)
T KOG4031|consen 81 VFQEDNGPADGYAGI-SQGPRLRDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANN 159 (216)
T ss_pred ccccCCCCccccccc-CCCCCcccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444433222 22222334456777899999999888888765 5899999999999999999999999999999
Q ss_pred HHhh
Q 025089 130 KASN 133 (258)
Q Consensus 130 k~~N 133 (258)
++.-
T Consensus 160 k~ee 163 (216)
T KOG4031|consen 160 KAEE 163 (216)
T ss_pred HHHH
Confidence 6543
No 4
>PF08079 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; InterPro: IPR012988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This presumed domain is found at the N terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [].; PDB: 3IZR_e 3O5H_G 3O58_G 3IZS_e 4A1A_V 4A17_V 4A1E_V 4A1C_V.
Probab=74.55 E-value=31 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 82 LREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEF 118 (258)
Q Consensus 82 IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~F 118 (258)
-.+|+..+.......-......+..|.+.|++|+-+|
T Consensus 9 ~~~~~~~~~~~~~~~k~~~~~~r~~~~kRAekY~kEY 45 (71)
T PF08079_consen 9 NEKLKAKRAKKAAARKKKRKKKRKEIFKRAEKYVKEY 45 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888999999999999965554
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=65.38 E-value=62 Score=28.10 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 025089 82 LREWRRENAIRL 93 (258)
Q Consensus 82 IReWREe~a~rI 93 (258)
|+.+-++|...|
T Consensus 56 I~~~l~~R~~~I 67 (181)
T PRK13454 56 IGAVLAERQGTI 67 (181)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 6
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=63.94 E-value=19 Score=32.55 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhH
Q 025089 80 FALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNR 134 (258)
Q Consensus 80 E~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NR 134 (258)
+-..+|..+.+.+=++-.++.+++++++++++++|..++-.+.+.++..|++...
T Consensus 116 eWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~k~~nr~~ee 170 (225)
T PF01086_consen 116 EWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEKNKKQNREEEE 170 (225)
T ss_dssp HHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555455556789999999999999999999999999999987755
No 7
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=63.82 E-value=70 Score=27.57 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 025089 82 LREWRRENAIRL 93 (258)
Q Consensus 82 IReWREe~a~rI 93 (258)
|...-++|...|
T Consensus 49 I~~~l~~R~~~I 60 (184)
T CHL00019 49 LSDLLDNRKQTI 60 (184)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 8
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=61.16 E-value=90 Score=26.24 Aligned_cols=13 Identities=15% Similarity=0.005 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 025089 82 LREWRRENAIRLE 94 (258)
Q Consensus 82 IReWREe~a~rIe 94 (258)
|...-++|..+|.
T Consensus 47 i~~~l~~R~~~I~ 59 (156)
T CHL00118 47 LLKVLDERKEYIR 59 (156)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 9
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=61.15 E-value=87 Score=26.71 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 025089 104 LNQIIEEAEEYKLEFYRKSIVTRENNK 130 (258)
Q Consensus 104 keqi~kEAee~id~FY~~rn~kkEknk 130 (258)
.+++.+++.+.+++-..+-...++.-+
T Consensus 80 L~~a~~ea~~ii~~a~~~a~~~~~~~~ 106 (174)
T PRK07352 80 LAQAQQEAERIRADAKARAEAIRAEIE 106 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333
No 10
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=60.92 E-value=68 Score=26.41 Aligned_cols=72 Identities=22% Similarity=0.212 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHHhhHHHHHHHHHhhhhhhhcccCChHHHHHhhcCC
Q 025089 91 IRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSI-----VTRENNKASNREREKLFVASQQKFHDEAYKNYWKAIAELIPN 165 (258)
Q Consensus 91 ~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn-----~kkEknk~~NRe~Ek~FLa~re~F~~~a~gt~WERVaeLIDl 165 (258)
.+|.+|.+--...++.+|+|++. --||.+|- ..+..-+..||.+|++..+-.-+|. ....-.|++-..-|=|
T Consensus 10 eeLs~kirdf~Ra~~SLiEEiEA--~~wY~qR~~~tKD~~~r~ImehnrdeE~eHa~mlLEwl-rR~~p~wd~eL~eiLf 86 (103)
T COG3461 10 EELSEKIRDFSRARQSLIEEIEA--MMWYDQRADATKDEDLRAIMEHNRDEEKEHAAMLLEWL-RRHDPAWDAELHEILF 86 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhccccHhHHHHHHHcccHHHHHHHHHHHHH-HHcCchHHHHHHHHHh
Confidence 35666777667777888887776 35999885 4556667899999998776555554 4557789988877766
No 11
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.21 E-value=1.2e+02 Score=33.40 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=8.2
Q ss_pred CChHHH--HHhhcCC
Q 025089 153 KNYWKA--IAELIPN 165 (258)
Q Consensus 153 gt~WER--VaeLIDl 165 (258)
.-.||| |.+|.+-
T Consensus 410 qlewErar~qem~~Q 424 (1118)
T KOG1029|consen 410 QLEWERARRQEMLNQ 424 (1118)
T ss_pred HHHHHHHHHHHHHhh
Confidence 558986 4566653
No 12
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=55.58 E-value=1e+02 Score=27.80 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 025089 81 ALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133 (258)
Q Consensus 81 ~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~N 133 (258)
.+.+|+.+....+++-.......+++++++|++.++....+-...++..++.-
T Consensus 65 ~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a 117 (246)
T TIGR03321 65 KNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAAL 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665544555566666666666666665555555554444333
No 13
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=52.49 E-value=18 Score=31.94 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 77 EEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAE 112 (258)
Q Consensus 77 eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAe 112 (258)
.+-..|.+|.+++..+-+++.++.+++.+++.+.++
T Consensus 126 ~~~k~l~~~~~~~~er~k~~~e~~~~k~~~l~~~~e 161 (162)
T PF13019_consen 126 NEEKKLAEWLEKKPEREKKEKEKRRKKLEKLVEMLE 161 (162)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhc
Confidence 355689999998887776555555666666666554
No 14
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=52.37 E-value=50 Score=26.97 Aligned_cols=40 Identities=30% Similarity=0.271 Sum_probs=26.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 77 EEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKL 116 (258)
Q Consensus 77 eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id 116 (258)
.|-..||++..+|=+.|.++-..+.+..++-++++++.|+
T Consensus 61 ~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 61 QEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556777777777777766666666666666666666553
No 15
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=51.58 E-value=1.4e+02 Score=26.60 Aligned_cols=9 Identities=0% Similarity=0.028 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 025089 85 WRRENAIRL 93 (258)
Q Consensus 85 WREe~a~rI 93 (258)
.-++|...|
T Consensus 76 ~L~~R~~~I 84 (205)
T PRK06231 76 FLNKRKELI 84 (205)
T ss_pred HHHHHHHHH
Confidence 333333333
No 16
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=48.96 E-value=1.4e+02 Score=27.50 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 81 ALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRE 127 (258)
Q Consensus 81 ~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkE 127 (258)
.+.+++.+....|++-.......+++++++|++..+....+-...++
T Consensus 65 ~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie 111 (250)
T PRK14474 65 KQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLE 111 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665555544445555566666666655555444444433
No 17
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=45.76 E-value=1.9e+02 Score=24.65 Aligned_cols=13 Identities=15% Similarity=0.072 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 025089 82 LREWRRENAIRLE 94 (258)
Q Consensus 82 IReWREe~a~rIe 94 (258)
|..+-++|...|.
T Consensus 41 i~~~l~~R~~~I~ 53 (173)
T PRK13460 41 ILKALDERASGVQ 53 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 18
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=45.24 E-value=96 Score=26.67 Aligned_cols=43 Identities=35% Similarity=0.468 Sum_probs=36.7
Q ss_pred ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 77 EEG-FALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFY 119 (258)
Q Consensus 77 eEp-E~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY 119 (258)
+|| ..||.|-.++---+-||=+++-...+|...+++.|+|-+.
T Consensus 82 eEPik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLDalL 125 (135)
T PF15466_consen 82 EEPIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLDALL 125 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 5899999999888888888888889999999999988764
No 19
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=44.81 E-value=1.5e+02 Score=23.19 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhH
Q 025089 87 RENAIRLEEKEK-KEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNR 134 (258)
Q Consensus 87 Ee~a~rIeEKD~-~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NR 134 (258)
|+.+..|-++-+ ....+..+++.+|+..|+.|..+++...........
T Consensus 13 E~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~ 61 (105)
T PF03179_consen 13 EKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAE 61 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555544443 345677788899999888888888777665554443
No 20
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=44.72 E-value=1.3e+02 Score=25.11 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 87 RENAIRLEEKEK-KEKEMLNQIIEEAEEYKLEFYRKSIVTR 126 (258)
Q Consensus 87 Ee~a~rIeEKD~-~e~E~keqi~kEAee~id~FY~~rn~kk 126 (258)
|+++.+|-+.-+ .......+++.||+..|++|-.+|+...
T Consensus 15 EK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~ef 55 (108)
T KOG1772|consen 15 EKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEF 55 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544443 3456677899999999998866665543
No 21
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=43.38 E-value=73 Score=25.23 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=12.5
Q ss_pred HHhHHhhHHHHHHHHHhh
Q 025089 127 ENNKASNREREKLFVASQ 144 (258)
Q Consensus 127 Eknk~~NRe~Ek~FLa~r 144 (258)
.+..+.|++..+.||++.
T Consensus 90 ~~~~~~~~~~~~~fla~n 107 (124)
T PF01346_consen 90 AKAAEKNKAEGEAFLAEN 107 (124)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHH
Confidence 334677888888888743
No 22
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=42.61 E-value=2e+02 Score=23.99 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025089 81 ALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKA 131 (258)
Q Consensus 81 ~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~ 131 (258)
.|.+-++++...|.+-.....+..+++-.+|++-.+++......+.+.-..
T Consensus 22 ~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~ 72 (108)
T COG2811 22 EIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAE 72 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888877777778888888888888777776666665544433
No 23
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=41.30 E-value=2.3e+02 Score=24.30 Aligned_cols=62 Identities=11% Similarity=0.257 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhhhcccCChHHHHHhhcCCCchhHHHhhhhhhccCCCcceeecCCCCCCCchhhHHHHHHHHhcCC
Q 025089 136 REKLFVASQQKFHDEAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKLKHN 212 (258)
Q Consensus 136 ~Ek~FLa~re~F~~~a~gt~WERVaeLIDle~p~~Ek~~~kkd~~Kk~~i~vi~gpK~gK~kDlSRMRqILLkLK~~ 212 (258)
-++.|-.-++.........||+=+..||.- +-..-. .+.++|..+ +.|+.-.+.+|-.|+..
T Consensus 83 ~~~v~~~a~~~l~~~~~~~Y~~~l~~li~~---------a~~~l~-~~~i~i~~~-----~~D~~~~~~~~~~~~~~ 144 (198)
T PRK03963 83 ISEVLEAVRERLAELPEDEYFETLKALTKE---------AVEELG-EDKVVVRSN-----ERTLKLIDSRLEEIRDE 144 (198)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHH---------HHHHhC-CCcEEEEEc-----cccHHHHHHHHHHHHHH
Confidence 344555555444333345677777777762 000000 123445433 47887787877777643
No 24
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.67 E-value=2e+02 Score=28.67 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 82 LREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEF 118 (258)
Q Consensus 82 IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~F 118 (258)
|.+++.+...-|++-.+..++.+++++++|++..+..
T Consensus 62 L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i 98 (445)
T PRK13428 62 VEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERI 98 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333334444444444444443333
No 25
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=37.28 E-value=2.6e+02 Score=23.80 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 025089 82 LREWRRENAIRLEE 95 (258)
Q Consensus 82 IReWREe~a~rIeE 95 (258)
|...-++|...|..
T Consensus 43 i~~~l~~R~~~I~~ 56 (175)
T PRK14472 43 ILSALEEREKGIQS 56 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555554443
No 26
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=36.53 E-value=1.9e+02 Score=26.95 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 83 REWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIV 124 (258)
Q Consensus 83 ReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~ 124 (258)
..|+.+++++..++.+.....+..+.+.|+.|+.+|.....+
T Consensus 11 ~~~~~~~~~~~~~~k~~~~~~k~~~fkr~e~~~~~y~~~e~d 52 (235)
T TIGR01310 11 QELAVVRAKQAKAKKKRNKKKKKHYFKRAESFVHEYRKAERE 52 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345555555555555556677888899999976666544333
No 27
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=34.91 E-value=2.1e+02 Score=24.43 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 88 ENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVT 125 (258)
Q Consensus 88 e~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~k 125 (258)
+++.+++++.++-++...+.+.+|.+.+......++.+
T Consensus 6 ~~~~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~ 43 (151)
T PF11875_consen 6 RKKREIEEQREKNKEEIAEKRAEAESAIELMKETAERK 43 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666667777655554444333
No 28
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.59 E-value=1.9e+02 Score=32.00 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=8.5
Q ss_pred HhHHhhHHHHHHHH
Q 025089 128 NNKASNREREKLFV 141 (258)
Q Consensus 128 knk~~NRe~Ek~FL 141 (258)
-+-..||+.|..|.
T Consensus 421 m~~Qk~reqe~iv~ 434 (1118)
T KOG1029|consen 421 MLNQKNREQEWIVY 434 (1118)
T ss_pred HHhhhhHHHHHHHH
Confidence 34455677776666
No 29
>PLN03086 PRLI-interacting factor K; Provisional
Probab=32.09 E-value=1.7e+02 Score=30.60 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=12.7
Q ss_pred ccCChHHHHHhhcCC
Q 025089 151 AYKNYWKAIAELIPN 165 (258)
Q Consensus 151 a~gt~WERVaeLIDl 165 (258)
..|-.|.+|.+-+.+
T Consensus 73 ~~g~~~~~~~~~~~~ 87 (567)
T PLN03086 73 GRGIVFSRIFEAVSF 87 (567)
T ss_pred CCCeEEEEEeecccc
Confidence 468899999888887
No 30
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=31.28 E-value=1.5e+02 Score=30.43 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 82 LREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVT 125 (258)
Q Consensus 82 IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~k 125 (258)
--.|.+++++++ +++++..+++++.+++.++||..|...+...
T Consensus 235 y~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~ 277 (530)
T COG0488 235 YSSYLEQKAERL-RQEAAAYEKQQKELAKEQEWIRRGKAAASKA 277 (530)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 445666666665 5566666778888899999999998887774
No 31
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=31.26 E-value=2.8e+02 Score=22.37 Aligned_cols=30 Identities=13% Similarity=-0.022 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025089 102 EMLNQIIEEAEEYKLEFYRKSIVTRENNKA 131 (258)
Q Consensus 102 E~keqi~kEAee~id~FY~~rn~kkEknk~ 131 (258)
+..+++..++.+.+++...+-+...+.-+.
T Consensus 64 ~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~ 93 (140)
T PRK07353 64 QQLASARKQAQAVIAEAEAEADKLAAEALA 93 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333333
No 32
>PRK15244 virulence protein SpvB; Provisional
Probab=30.35 E-value=34 Score=35.73 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025089 211 HNTPAHLKPSPPPASAPATD 230 (258)
Q Consensus 211 ~~pp~h~~~~~~~~~~~~~~ 230 (258)
+.|...|+||||||+...+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~ 378 (591)
T PRK15244 359 RAPVNNMMPPPPPPPMMGGN 378 (591)
T ss_pred cccCCCCCCCcccCcccCCc
Confidence 35666788866666654443
No 33
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=29.25 E-value=57 Score=24.60 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHhhhhhh
Q 025089 111 AEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKFH 148 (258)
Q Consensus 111 Aee~id~FY~~rn~kkEknk~~NRe~Ek~FLa~re~F~ 148 (258)
.++|+..||.+.+.+.|-..-.=++-|+.+.++|+.|.
T Consensus 22 g~~yvkkwf~khen~eelgrptfkevekdwkenresf~ 59 (65)
T PF13220_consen 22 GDQYVKKWFSKHENNEELGRPTFKEVEKDWKENRESFM 59 (65)
T ss_pred HhHHHHHHHHhccchhhhCCCcHHHHHHHHHHhhhhhc
Confidence 46777788888887777777777788888888888874
No 34
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=27.14 E-value=4e+02 Score=22.84 Aligned_cols=15 Identities=7% Similarity=0.012 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 025089 81 ALREWRRENAIRLEE 95 (258)
Q Consensus 81 ~IReWREe~a~rIeE 95 (258)
.|+.+-++|..+|..
T Consensus 51 ~v~~~L~~R~~~I~~ 65 (184)
T PRK13455 51 MIGGMLDKRAEGIRS 65 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666666654
No 35
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=27.02 E-value=83 Score=21.14 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhhhhcccCCh-HHHHHhhcC
Q 025089 135 EREKLFVASQQKFHDEAYKNY-WKAIAELIP 164 (258)
Q Consensus 135 e~Ek~FLa~re~F~~~a~gt~-WERVaeLID 164 (258)
++++.|+..-.. .|+. |..|++++.
T Consensus 7 eE~~~l~~~v~~-----~g~~~W~~Ia~~~~ 32 (48)
T PF00249_consen 7 EEDEKLLEAVKK-----YGKDNWKKIAKRMP 32 (48)
T ss_dssp HHHHHHHHHHHH-----STTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-----hCCcHHHHHHHHcC
Confidence 455666654443 3555 999999998
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.98 E-value=5.3e+02 Score=25.08 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 025089 79 GFALREWRRENAIRLEEKEKK 99 (258)
Q Consensus 79 pE~IReWREe~a~rIeEKD~~ 99 (258)
-..|++|+++++..|.+...+
T Consensus 119 e~~l~~y~~~n~~~I~~n~~~ 139 (309)
T TIGR00570 119 KKKIETYQKENKDVIQKNKEK 139 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 358999999999999976443
No 37
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=25.89 E-value=3.7e+02 Score=22.02 Aligned_cols=10 Identities=10% Similarity=0.099 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 025089 84 EWRRENAIRL 93 (258)
Q Consensus 84 eWREe~a~rI 93 (258)
.+-++|...|
T Consensus 31 ~~l~~R~~~I 40 (156)
T PRK05759 31 KALEERQKKI 40 (156)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 38
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=25.86 E-value=3.9e+02 Score=22.23 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 87 RENAIRLEEKEKK-EKEMLNQIIEEAEEYKLEFYRKSIVTR 126 (258)
Q Consensus 87 Ee~a~rIeEKD~~-e~E~keqi~kEAee~id~FY~~rn~kk 126 (258)
|+.+..|-.+.+. ...++.+++.+|+..|+.|-.+++...
T Consensus 15 E~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef 55 (113)
T TIGR01147 15 EKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEF 55 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544442 355666888889998888865555544
No 39
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=24.38 E-value=5.1e+02 Score=23.30 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHh
Q 025089 80 FALREWRRENA-IRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVAS 143 (258)
Q Consensus 80 E~IReWREe~a-~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~Ek~FLa~ 143 (258)
..++.|++.+. .....+|......+++++..|..- +.++|+.+.+..+..-++.|++-...
T Consensus 56 ~~~r~~r~~~~~~~~~~~dpd~v~~rqEa~eaAR~R---mQEE~dakA~~~kEKq~q~EEEKRrq 117 (190)
T PF06936_consen 56 PSFRSLRERRQLDAAAKKDPDVVVRRQEAMEAARRR---MQEELDAKAEEYKEKQKQEEEEKRRQ 117 (190)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhcChhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
No 40
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.15 E-value=3.2e+02 Score=23.53 Aligned_cols=48 Identities=17% Similarity=-0.013 Sum_probs=40.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 77 EEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIV 124 (258)
Q Consensus 77 eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~ 124 (258)
..+..|.+|-+.-.+.+.+.....++..+.+..-++..|.+|...++.
T Consensus 11 ~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 11 HSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888888888888888888889888777
No 41
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=23.86 E-value=1.2e+02 Score=22.28 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHHHH
Q 025089 77 EEGFALREWRRENAIR 92 (258)
Q Consensus 77 eEpE~IReWREe~a~r 92 (258)
.-++-|.+|++++.+.
T Consensus 18 ~t~eeI~~W~eERrk~ 33 (56)
T PF10453_consen 18 QTPEEIAKWIEERRKN 33 (56)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 4577899999999864
No 42
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=23.60 E-value=3.9e+02 Score=24.90 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025089 81 ALREWRRENAIRLEEKEKKE-KEMLNQIIEEAEEYKLEFYRKSIVTRENNKA 131 (258)
Q Consensus 81 ~IReWREe~a~rIeEKD~~e-~E~keqi~kEAee~id~FY~~rn~kkEknk~ 131 (258)
.||.=-++-+++|.-+.+.| .-.|.+++++-..-|+++|.....+.+..++
T Consensus 16 FI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kk 67 (220)
T KOG1664|consen 16 FIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKK 67 (220)
T ss_pred HHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666665443 4567788888888999999998888776654
No 43
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=22.67 E-value=2e+02 Score=27.86 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=16.4
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 025089 81 ALREWRRENAI---RLEEKEKKEKEMLNQIIEEAEE 113 (258)
Q Consensus 81 ~IReWREe~a~---rIeEKD~~e~E~keqi~kEAee 113 (258)
+|++-+.-++. -|.+|+..--....+.++||-+
T Consensus 183 S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAme 218 (302)
T PF07139_consen 183 SIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAME 218 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443 3444444434444455555555
No 44
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.39 E-value=2.3e+02 Score=26.03 Aligned_cols=49 Identities=12% Similarity=0.223 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHhhhhh
Q 025089 99 KEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFVASQQKF 147 (258)
Q Consensus 99 ~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~Ek~FLa~re~F 147 (258)
...|+.++.++.++++.++|-+-|+.+-.+..+.-++++.++...|-++
T Consensus 69 iD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~el 117 (201)
T COG1422 69 IDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQREL 117 (201)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777888887777766666555555666566666666555444
No 45
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.90 E-value=1.4e+02 Score=28.08 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=43.1
Q ss_pred CccccccCCCCCCCCcCCCCCCCccccC---------------Ccccccc--------cCC-CCCCCCCCCC--------
Q 025089 23 AEQLNSAVDLSDDNNNSSFQSGDDAFAS---------------QTSVYGE--------YAD-GGSDGPILPP-------- 70 (258)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------~~~~~~~--------~s~-~~sd~p~~p~-------- 70 (258)
|-|-|+|-|.-.-.-|.-++-||=|.++ -|.|.|+ |++ |.=+.|.---
T Consensus 111 GrYEGiDeRvi~~~vdeEiSIGDyVLtGGEl~AmvliDav~RlipGVlg~~~S~e~dSF~~~gLLe~P~YTRP~~~~g~~ 190 (240)
T COG0336 111 GRYEGIDERVIELYVDEEISIGDYVLTGGELAAMVLIDAVVRLIPGVLGNEESLEEDSFENNGLLEYPHYTRPREFEGMK 190 (240)
T ss_pred ccccchhHHHHhhccceEEeeccEEecCccHHHHHHHHHHHHhcccccCCcccccccccccCCccCCCCcCChhhcCCCc
Confidence 4577888877766666677777776555 2566665 332 3333322111
Q ss_pred -CCCCCccccHHHHHHHHHHHHHHHH
Q 025089 71 -PSDMVPEEGFALREWRRENAIRLEE 95 (258)
Q Consensus 71 -p~~~~~eEpE~IReWREe~a~rIeE 95 (258)
|......-=..|++||.+|..+.-.
T Consensus 191 VP~VLlSGnH~~I~~WR~~qsl~rT~ 216 (240)
T COG0336 191 VPEVLLSGNHAKIAQWRLEQSLERTK 216 (240)
T ss_pred CChhhhcCcHHHHHHHHHHHHHHHHH
Confidence 1112234456899999999877643
No 46
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=21.09 E-value=1.7e+02 Score=27.58 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=39.4
Q ss_pred CccccccCCCCCCCCcCCCCCCCccccC---------------CcccccccCCC----CCCCCCCCCC------------
Q 025089 23 AEQLNSAVDLSDDNNNSSFQSGDDAFAS---------------QTSVYGEYADG----GSDGPILPPP------------ 71 (258)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------~~~~~~~~s~~----~sd~p~~p~p------------ 71 (258)
|-|-|.|-|+-...-|.-++-||=|.++ -|.+.|+..+. -++|-.-.|+
T Consensus 113 GrYEGiDeRv~~~~vdeeiSiGDyVLtGGElaAmv~iDav~RllPGVlg~~~S~~~eSF~~gLLeyPqYTRP~~~~g~~V 192 (244)
T PRK00026 113 GRYEGIDERVIEHYVDEEISIGDYVLTGGELAAMVLIDAVVRLLPGVLGNEESAEEDSFSDGLLEYPHYTRPAEFRGMKV 192 (244)
T ss_pred ccccChHHHHHhhhCcEEEeeccEEecCchHHHHHHHHHHHHcCCCccCCccccccccccCCCCCCCCCCChHhhCCCCC
Confidence 4466777777555556666667666554 25666532110 0122111111
Q ss_pred -CCCCccccHHHHHHHHHHHHHHHHH
Q 025089 72 -SDMVPEEGFALREWRRENAIRLEEK 96 (258)
Q Consensus 72 -~~~~~eEpE~IReWREe~a~rIeEK 96 (258)
......-=..|++||++++.+.-.+
T Consensus 193 P~VLlSGnH~~I~~WR~~~sl~~T~~ 218 (244)
T PRK00026 193 PEVLLSGNHAKIARWRRKQSLERTKL 218 (244)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHH
Confidence 1112234458999999998876543
No 47
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.33 E-value=8.2e+02 Score=23.98 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=8.5
Q ss_pred CChHHHHHhhcCC
Q 025089 153 KNYWKAIAELIPN 165 (258)
Q Consensus 153 gt~WERVaeLIDl 165 (258)
.|-|--.-..|++
T Consensus 99 ~nNWPPLP~~~pv 111 (313)
T KOG3088|consen 99 ENNWPPLPSFIPV 111 (313)
T ss_pred ccCCCCCCCCCCc
Confidence 5677766666665
No 48
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=20.01 E-value=3.7e+02 Score=22.92 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=25.6
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 83 REWR----RENAIRLEEKEKKEKEMLNQIIEEAEE 113 (258)
Q Consensus 83 ReWR----Ee~a~rIeEKD~~e~E~keqi~kEAee 113 (258)
-.|| ....++|+..+++++.+|.+|+.-...
T Consensus 67 la~r~~~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~ 101 (120)
T PF04521_consen 67 LAWRHAQLSDLNLELEKLERREEQLKTQIQVLTAA 101 (120)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4698 778889999999999999988876555
Done!