Query 025089
Match_columns 258
No_of_seqs 122 out of 216
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvg_D LCB, clathrin light cha 99.9 4.9E-24 1.7E-28 184.0 -2.1 105 57-164 62-166 (190)
2 3lvh_D LCB, clathrin light cha 99.8 8.8E-22 3E-26 172.8 3.4 90 57-146 77-166 (205)
3 1xi4_J LCA, clathrin light cha 99.8 1.5E-19 5E-24 136.0 9.5 66 76-141 5-70 (70)
4 1xi4_J LCA, clathrin light cha 80.4 15 0.00051 27.2 8.9 64 70-133 2-66 (70)
5 4efa_E V-type proton ATPase su 60.0 80 0.0027 26.8 10.5 50 82-131 24-74 (233)
6 3lvh_D LCB, clathrin light cha 51.6 22 0.00076 31.3 5.4 63 71-133 94-157 (205)
7 1wgx_A KIAA1903 protein; MYB D 47.4 15 0.00053 27.2 3.2 32 133-165 12-43 (73)
8 3lvg_D LCB, clathrin light cha 45.5 35 0.0012 29.7 5.6 60 73-132 81-141 (190)
9 4a17_V RPL7, 60S ribosomal pro 43.4 1.1E+02 0.0037 27.2 8.6 42 85-126 19-60 (239)
10 4efa_G V-type proton ATPase su 41.3 1.1E+02 0.0036 24.4 7.6 40 87-126 19-59 (119)
11 4f6r_C Stathmin-like domain R1 35.4 99 0.0034 23.8 6.2 28 118-145 57-84 (87)
12 1y66_A Engrailed homeodomain; 31.0 89 0.003 21.6 4.7 19 83-101 2-20 (52)
13 3frt_A Charged multivesicular 28.4 2.2E+02 0.0075 24.7 8.0 58 80-141 10-74 (218)
14 3izc_e 60S ribosomal protein R 27.4 1.2E+02 0.0042 26.9 6.3 41 85-125 22-62 (244)
15 2cjj_A Radialis; plant develop 25.5 55 0.0019 25.0 3.2 32 133-165 12-43 (93)
16 2yus_A SWI/SNF-related matrix- 24.8 49 0.0017 24.2 2.8 27 134-165 23-49 (79)
17 3ky7_A TRNA (guanine-N(1)-)-me 22.9 98 0.0033 28.3 4.9 18 79-96 223-240 (269)
18 2cqq_A RSGI RUH-037, DNAJ homo 22.2 62 0.0021 23.4 2.8 31 133-164 12-42 (72)
19 4eef_G F-HB80.4, designed hema 22.0 15 0.00052 27.6 -0.5 32 133-165 24-55 (74)
20 2wh6_A Early antigen protein R 21.1 1.5E+02 0.0052 25.3 5.4 45 118-165 74-120 (173)
21 4gdk_C APG16-like 1, autophagy 21.1 1.2E+02 0.0043 19.7 3.8 26 84-109 5-30 (36)
22 2cu7_A KIAA1915 protein; nucle 20.0 75 0.0025 22.3 2.8 27 134-165 14-40 (72)
No 1
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=99.86 E-value=4.9e-24 Score=183.99 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=97.4
Q ss_pred ccCCCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH
Q 025089 57 EYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNRER 136 (258)
Q Consensus 57 ~~s~~~sd~p~~p~p~~~~~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~ 136 (258)
+.++|++|+++++++.++..+|||.||+|||+|++||++||+.+++++++++++|++.|++||++||+++++++++||+.
T Consensus 62 qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR~a 141 (190)
T 3lvg_D 62 XXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141 (190)
T ss_dssp CCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred cccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccCChHHHHHhhcC
Q 025089 137 EKLFVASQQKFHDEAYKNYWKAIAELIP 164 (258)
Q Consensus 137 Ek~FLa~re~F~~~a~gt~WERVaeLID 164 (258)
|++||++|+. +..|.+|.--.....
T Consensus 142 EEeFLaqRdd---ttiGyV~~~~~~~~~ 166 (190)
T 3lvg_D 142 DKAFYQQPDA---DIIXXXXXXXXXXXX 166 (190)
T ss_dssp TTTSSHHHHH---HHCCTTTHHHHHHHC
T ss_pred HHHHHhCCcc---chhhhhccccccccc
Confidence 9999999997 778999986544443
No 2
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=99.83 E-value=8.8e-22 Score=172.76 Aligned_cols=90 Identities=28% Similarity=0.368 Sum_probs=74.8
Q ss_pred ccCCCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH
Q 025089 57 EYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNRER 136 (258)
Q Consensus 57 ~~s~~~sd~p~~p~p~~~~~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~ 136 (258)
+.|+|++|+++.+++.+...+|||+||+|||+|++||++||+.+++++++++++|++.|++||.+|+.+++|+|++||..
T Consensus 77 qesngp~d~yaai~qad~leeEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~a 156 (205)
T 3lvh_D 77 QEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156 (205)
T ss_dssp --------------CCSTTTBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhcCCCccchhhhccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 025089 137 EKLFVASQQK 146 (258)
Q Consensus 137 Ek~FLa~re~ 146 (258)
+++||++|+.
T Consensus 157 eeeFlaqrd~ 166 (205)
T 3lvh_D 157 DKAFYQQPDA 166 (205)
T ss_dssp TTTSSHHHHH
T ss_pred HHHHHhCccc
Confidence 9999999986
No 3
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=99.80 E-value=1.5e-19 Score=135.97 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=64.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 025089 76 PEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFV 141 (258)
Q Consensus 76 ~eEpE~IReWREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~Ek~FL 141 (258)
.+||++||+||++|+++|++||+.+++++++++++|+++||+||.+||.++++++++||..+++||
T Consensus 5 ~~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl 70 (70)
T 1xi4_J 5 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY 70 (70)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 479999999999999999999999999999999999999999999999999999999999999986
No 4
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=80.35 E-value=15 Score=27.20 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=52.1
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 025089 70 PPSDMVPEEGFALREWRRENAIRLEEKEK-KEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133 (258)
Q Consensus 70 ~p~~~~~eEpE~IReWREe~a~rIeEKD~-~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~N 133 (258)
+|..+.++--..-|+=+..+-.+..+..+ +..++++++++++++|.+.|-.+-...+..|...-
T Consensus 2 ~~~~~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~ 66 (70)
T 1xi4_J 2 DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVAD 66 (70)
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667788888888888877765 58999999999999999999999999999988653
No 5
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=59.97 E-value=80 Score=26.78 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025089 82 LREWRRENAIRLEEKEKK-EKEMLNQIIEEAEEYKLEFYRKSIVTRENNKA 131 (258)
Q Consensus 82 IReWREe~a~rIeEKD~~-e~E~keqi~kEAee~id~FY~~rn~kkEknk~ 131 (258)
|++=-++.+.+|..+-+. ....+.++..++..-|+..|++...+.+..++
T Consensus 24 I~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~ 74 (233)
T 4efa_E 24 IRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQ 74 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666555433 34466778888888888899887777665443
No 6
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=51.65 E-value=22 Score=31.31 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=50.9
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 025089 71 PSDMVPEEGFALREWRRENAIRLEEKE-KKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133 (258)
Q Consensus 71 p~~~~~eEpE~IReWREe~a~rIeEKD-~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~N 133 (258)
+.+.++|--..-|+=+.++-.++.+.. ++.++|++++++++++|-..+-.+-...+.+|+...
T Consensus 94 ~leeEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~ae 157 (205)
T 3lvh_D 94 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 157 (205)
T ss_dssp TTTBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSST
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334455677788888888777777665 568999999999999999999999999998887653
No 7
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=47.44 E-value=15 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.277 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhhhhhhhcccCChHHHHHhhcCC
Q 025089 133 NREREKLFVASQQKFHDEAYKNYWKAIAELIPN 165 (258)
Q Consensus 133 NRe~Ek~FLa~re~F~~~a~gt~WERVaeLIDl 165 (258)
++++++.|+.....|- ......|++|+..|.-
T Consensus 12 T~eE~k~fe~ALa~~~-~~tp~rWe~IA~~V~g 43 (73)
T 1wgx_A 12 NEKELQKLHCAFASLP-KHKPGFWSEVAAAVGS 43 (73)
T ss_dssp CHHHHHHHHHHHHHSC-SSSSSHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHCC-CCCccHHHHHHHHcCC
Confidence 4577778877776663 2235689999999984
No 8
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=45.54 E-value=35 Score=29.66 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=48.9
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 025089 73 DMVPEEGFALREWRRENAIRLEEKE-KKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKAS 132 (258)
Q Consensus 73 ~~~~eEpE~IReWREe~a~rIeEKD-~~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~ 132 (258)
+.++|--..-||=+.++-+++.+.. ++.+||++++++++++|-..+-.+-+..+.+|++.
T Consensus 81 eEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR~a 141 (190)
T 3lvg_D 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141 (190)
T ss_dssp TTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445666778887777777776665 56899999999999999999999999999888865
No 9
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=43.42 E-value=1.1e+02 Score=27.25 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 85 WRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTR 126 (258)
Q Consensus 85 WREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~kk 126 (258)
|+..++.+..+.....+..+..+.+.|+.|+.+|...+...+
T Consensus 19 ~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~i 60 (239)
T 4a17_V 19 LRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIV 60 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333333344567777888999997666655555444
No 10
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=41.34 E-value=1.1e+02 Score=24.43 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 87 RENAIRLEEKEKK-EKEMLNQIIEEAEEYKLEFYRKSIVTR 126 (258)
Q Consensus 87 Ee~a~rIeEKD~~-e~E~keqi~kEAee~id~FY~~rn~kk 126 (258)
|+++..|-...+. ...+..+++.+|+..|+.|-.+|+...
T Consensus 19 Ek~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eF 59 (119)
T 4efa_G 19 EKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKEL 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433332 345667888999999888877666554
No 11
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=35.35 E-value=99 Score=23.82 Aligned_cols=28 Identities=0% Similarity=-0.046 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHhhh
Q 025089 118 FYRKSIVTRENNKASNREREKLFVASQQ 145 (258)
Q Consensus 118 FY~~rn~kkEknk~~NRe~Ek~FLa~re 145 (258)
.+.-++.++-+.++.+|+++++-+.+.+
T Consensus 57 RRks~EA~~L~~Laekreh~~EV~k~~~ 84 (87)
T 4f6r_C 57 RRKAHFAAMLERLQEKDKHAEEVRKNKE 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5666677777788888888888777654
No 12
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=31.03 E-value=89 Score=21.57 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025089 83 REWRRENAIRLEEKEKKEK 101 (258)
Q Consensus 83 ReWREe~a~rIeEKD~~e~ 101 (258)
+.|-|+-...|.|--+.-+
T Consensus 2 kqwseeverklkefvrrhq 20 (52)
T 1y66_A 2 KQWSEEVERKLKEFVRRHQ 20 (52)
T ss_dssp -CCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 5677776666665444333
No 13
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=28.39 E-value=2.2e+02 Score=24.71 Aligned_cols=58 Identities=9% Similarity=0.156 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 025089 80 FALREWRRENAIRLEEKEK-------KEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKLFV 141 (258)
Q Consensus 80 E~IReWREe~a~rIeEKD~-------~e~E~keqi~kEAee~id~FY~~rn~kkEknk~~NRe~Ek~FL 141 (258)
|.+|+|.+.-...+.+-|+ .++..+.+|++.|.+ -..+--.-+.++....|..-..|+
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakk----g~~~~arilAkelVR~Rk~~~rl~ 74 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKK----GQKDVCIVLAKEMIRSRKAVSKLY 74 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999877766666553 345555666666655 122222333444555555555555
No 14
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=27.39 E-value=1.2e+02 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 85 WRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVT 125 (258)
Q Consensus 85 WREe~a~rIeEKD~~e~E~keqi~kEAee~id~FY~~rn~k 125 (258)
|+.++.++..++....+..+..+.+.|+.|+.+|...+...
T Consensus 22 ~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r~~ 62 (244)
T 3izc_e 22 TAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNI 62 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444556777788889999766665444443
No 15
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=25.47 E-value=55 Score=24.96 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhhhhhhhcccCChHHHHHhhcCC
Q 025089 133 NREREKLFVASQQKFHDEAYKNYWKAIAELIPN 165 (258)
Q Consensus 133 NRe~Ek~FLa~re~F~~~a~gt~WERVaeLIDl 165 (258)
++++++.|+.....|- ...++-|+.||++|+-
T Consensus 12 T~eEd~~L~~al~~~~-~~~~~rW~~IA~~vpG 43 (93)
T 2cjj_A 12 SAKENKAFERALAVYD-KDTPDRWANVARAVEG 43 (93)
T ss_dssp CHHHHHHHHHHHHHSC-TTCTTHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcC-CCCCchHHHHHHHcCC
Confidence 3567777776666552 2236789999999973
No 16
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=24.83 E-value=49 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.476 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhhhhcccCChHHHHHhhcCC
Q 025089 134 REREKLFVASQQKFHDEAYKNYWKAIAELIPN 165 (258)
Q Consensus 134 Re~Ek~FLa~re~F~~~a~gt~WERVaeLIDl 165 (258)
.++++.|+...+.| |.-|..|+++|.-
T Consensus 23 ~eEd~~Ll~~v~~~-----G~~W~~IA~~v~~ 49 (79)
T 2yus_A 23 EQETLLLLEALEMY-----KDDWNKVSEHVGS 49 (79)
T ss_dssp HHHHHHHHHHHHHS-----SSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHh-----CCCHHHHHHHcCC
Confidence 46777777766553 5889999999874
No 17
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0
Probab=22.93 E-value=98 Score=28.26 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 025089 79 GFALREWRRENAIRLEEK 96 (258)
Q Consensus 79 pE~IReWREe~a~rIeEK 96 (258)
=..|++||++|+.+.-.+
T Consensus 223 H~~I~~WR~~qsl~rT~~ 240 (269)
T 3ky7_A 223 HANIDAWRHEQKLIRTYN 240 (269)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 348999999999876543
No 18
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.16 E-value=62 Score=23.44 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhhhhhhhcccCChHHHHHhhcC
Q 025089 133 NREREKLFVASQQKFHDEAYKNYWKAIAELIP 164 (258)
Q Consensus 133 NRe~Ek~FLa~re~F~~~a~gt~WERVaeLID 164 (258)
++++.+.|......|- ....+-|+.|++.+.
T Consensus 12 T~eE~k~fe~al~~~p-~~t~~RW~~IA~~lg 42 (72)
T 2cqq_A 12 TEEDLSQLTRSMVKFP-GGTPGRWEKIAHELG 42 (72)
T ss_dssp CHHHHHHHHHHHHHSC-TTCTTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC-CCCCcHHHHHHHHhC
Confidence 4677777777766663 222468999999864
No 19
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=21.96 E-value=15 Score=27.59 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhhhhhhhcccCChHHHHHhhcCC
Q 025089 133 NREREKLFVASQQKFHDEAYKNYWKAIAELIPN 165 (258)
Q Consensus 133 NRe~Ek~FLa~re~F~~~a~gt~WERVaeLIDl 165 (258)
++++.+.|....-.|- .....-|++|+..|.-
T Consensus 24 T~eE~K~FE~ALa~yp-~~tpdRWekIA~~VpG 55 (74)
T 4eef_G 24 KFSENIAFEIALSFTN-KDTPDRWKKVAQYVKG 55 (74)
T ss_dssp CTTHHHHHHHHTSSSC-SSCCSSSTTTGGGSCS
T ss_pred CHHHHHHHHHHHHHCC-CCCCcHHHHHHHHcCC
Confidence 4567888888777764 3336789999999973
No 20
>2wh6_A Early antigen protein R; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Human herpesvirus 4} PDB: 2v6q_A 2xpx_A 1q59_A
Probab=21.13 E-value=1.5e+02 Score=25.31 Aligned_cols=45 Identities=9% Similarity=-0.079 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHH-hhhhhhhcccCC-hHHHHHhhcCC
Q 025089 118 FYRKSIVTRENNKASNREREKLFVA-SQQKFHDEAYKN-YWKAIAELIPN 165 (258)
Q Consensus 118 FY~~rn~kkEknk~~NRe~Ek~FLa-~re~F~~~a~gt-~WERVaeLIDl 165 (258)
+|..-...|.+-..+--.....|.. ..|-|. +|. .|-||+.|.-|
T Consensus 74 ~~~~F~~ml~rl~~s~~ta~~~F~~VA~ELF~---dG~INWGRIVALfaF 120 (173)
T 2wh6_A 74 NSETFTETWNRFITHTEHVDLDFNSVFLEIFH---RGDPSLGRALAWMAW 120 (173)
T ss_dssp THHHHHHHHHHHHHHCSSHHHHHHHHHHHHHS---SSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHh---CCCCCcceehhhhhh
Confidence 3444455666655555556666766 556653 786 99999999865
No 21
>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C
Probab=21.05 E-value=1.2e+02 Score=19.69 Aligned_cols=26 Identities=19% Similarity=0.584 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025089 84 EWRRENAIRLEEKEKKEKEMLNQIIE 109 (258)
Q Consensus 84 eWREe~a~rIeEKD~~e~E~keqi~k 109 (258)
.||+.-..+|.++|+.+...-+.|+.
T Consensus 5 ~Wrr~I~~~Lr~RdR~q~~~F~diI~ 30 (36)
T 4gdk_C 5 RWKRHISEQLRRRDRLQRQAFEEIIL 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 59999999999999999888877764
No 22
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=20.02 E-value=75 Score=22.33 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhhhhcccCChHHHHHhhcCC
Q 025089 134 REREKLFVASQQKFHDEAYKNYWKAIAELIPN 165 (258)
Q Consensus 134 Re~Ek~FLa~re~F~~~a~gt~WERVaeLIDl 165 (258)
.++++.|+..... -|+-|..|+++|.-
T Consensus 14 ~eEd~~l~~~~~~-----~G~~W~~Ia~~~~~ 40 (72)
T 2cu7_A 14 IEEKELFEQGLAK-----FGRRWTKISKLIGS 40 (72)
T ss_dssp HHHHHHHHHHHHH-----TCSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHH-----HCcCHHHHHHHcCC
Confidence 3556666654444 37799999999874
Done!